Citrus Sinensis ID: 042603

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870----
Protein Sequence
LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLTLRRFYRGWM
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHHcccccccEEEcccccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccEEccccccccccccEEEEEccccEEEcccccccccccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEccccccEEccccccccccccEEEccccEEEEcccHHHHccccccEEEcccccccccccHHHcccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEcccEEEEccHHHcccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEHHHHHEEHHHHccccHHHHHHHHHHHHccEEEEEEEEEEEEHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccccccccccHHHcccccccEEEcccccccccccHHHHHHHHcccHEEHHcccccccccccccHHccccccEEEEEccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEEccccccccccccccccccEEEEccccccccccHHHcccccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHcHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHccccccEEEEcccccccccccHHccccccEEEEEccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHccHHHHHHHHHccccccccccccccccccHHHccccccEEEEEccccccccccHHHHHHccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHEEEEEHHccccHHHcccc
Coil and Loop (DISEMBL)
LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCvlkgalhgqdfhefknLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLqelyirdnDLRDSLLWCLANMTSLQVLNVAsnqltgnfppgFCELVLLRELYidnndlrgslplcLANLTSLRVLDVSYNQltenisssplmhlTSIEELIlsnnhfqipisleplfnlsklktfngeiyaeteshynsltpkfqltsislsgygdggtfpkflyhqhdlnnadlshlnlsgefpnwlpenntDLKTLLLANnslfgsfrmpihclqklatldvsnnfflghipveigtylpglmhlnlsrnafngsipssfADMKMLKSLDISYNqltgaipermamGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLlgglylsdnhlsgkiprWLGSLLALQDiimpnnnlegpipnefcqldclkvldlsnnsifgtlpsclslgsieQVHLSKNKIEGQLESIIHYYPYLVTLDLSynrlhgsipnwidklpQLSYILLANNYIEGEIPVQLCQLKEVRLIdlshnnlsghippclvntalsegyydavaptwdhasapalsyfppngspmgkeetVQFTTKNMSYYYRGRIltsmsgidlscnkltgeiptqiGYLTRIRALNlshnnltgtipttfsnlkQIESLDLSYnllhgkippqliVLNTLAVFRVAYNnlsgkipdrvaqfstfeedsyegnpflcglplskscddnglttvtteayteneegdslidmDSFLITFTVSYGIVIIGIIGVlyinpywrRRWFYLVEVCMTSCYYFVADNLTLRRFYRGWM
Flexible Loop (DISEMBL)
LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAyteneegdsliDMDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLTLRRFYRGWM
Low Complexity Region (SEG)
LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMAslrilslsysrlNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYgiviigiigvLYINPYWRRRWFYLVEVCMTSCYYFVADNLTLRRFYRGWM
Disordered region (IsUnstruct)
****TNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYF************VQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLTLRRFYRGW*
Disordered Region (DISOPRED)
LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYY***APTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP****************************DMDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLTLRRFYRGWM
Disordered Region (DISEMBL)
LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLTLRRFYRGWM
Disordered Region (DISPRO)
*HNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLTLRRFYRGWM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLTLRRFYRGWM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	874	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.778	0.543	0.313	3e-76
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.875	0.612	0.312	1e-75
Q9C9H7	847	Receptor-like protein 12	no	no	0.719	0.742	0.306	2e-66
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.742	0.544	0.309	3e-64
Q9LHP4	1141	Receptor-like protein kin	no	no	0.684	0.524	0.310	1e-60
Q9FL28	1173	LRR receptor-like serine/	no	no	0.775	0.578	0.289	8e-60
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.762	0.551	0.303	1e-59
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.763	0.552	0.299	3e-59
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.719	0.571	0.295	5e-58
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.737	0.553	0.292	3e-57

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  286 bits (733), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 230/733 (31%), Positives = 356/733 (48%), Gaps = 53/733 (7%)

Query: 104 LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI 163
           L  LV+L+ L + DN+L  ++     N+ +LQ+L +AS +LTG  P  F  LV L+ L +
Sbjct: 140 LGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLIL 199

Query: 164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF--QIPI 221
            +N+L G +P  + N TSL +   ++N+L  ++ +  L  L +++ L L +N F  +IP 
Sbjct: 200 QDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGDNSFSGEIPS 258

Query: 222 SLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLN 281
            L  L ++  L     ++          LT    L ++ LS     G   +  +  + L 
Sbjct: 259 QLGDLVSIQYLNLIGNQLQGLIPKR---LTELANLQTLDLSSNNLTGVIHEEFWRMNQLE 315

Query: 282 NADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLG 341
              L+   LSG  P  +  NNT LK L L+   L G     I   Q L  LD+SNN   G
Sbjct: 316 FLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTG 375

Query: 342 HIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAM--- 398
            IP  +   L  L +L L+ N+  G++ SS +++  L+   + +N L G +P+ +     
Sbjct: 376 QIPDSL-FQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGK 434

Query: 399 --------------------GCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFI 438
                                C  L+ +    N L G I S    L +L RL L  N+ +
Sbjct: 435 LEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELV 494

Query: 439 GEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC 498
           G IP SL  C+ +  + L+DN LSG IP   G L AL+  ++ NN+L+G +P+    L  
Sbjct: 495 GNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKN 554

Query: 499 LKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG 558
           L  ++ S+N   G++       S     +++N  EG +   +     L  L L  N+  G
Sbjct: 555 LTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTG 614

Query: 559 SIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP------PCL 612
            IP    K+ +LS + ++ N + G IPV+L   K++  IDL++N LSG IP      P L
Sbjct: 615 RIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLL 674

Query: 613 VNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGK--EETVQFTTKNMSYYYRGRI-- 668
               LS   +    PT   +    L+ F    S  G   +E       N       ++  
Sbjct: 675 GELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSG 734

Query: 669 --------LTSMSGIDLSCNKLTGEIPTQIGYLTRIR-ALNLSHNNLTGTIPTTFSNLKQ 719
                   L+ +  + LS N LTGEIP +IG L  ++ AL+LS+NN TG IP+T S L +
Sbjct: 735 PLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPK 794

Query: 720 IESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL 779
           +ESLDLS+N L G++P Q+  + +L    ++YNNL GK+     QFS ++ D++ GN  L
Sbjct: 795 LESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLK---KQFSRWQADAFVGNAGL 851

Query: 780 CGLPLSKSCDDNG 792
           CG PLS  C+  G
Sbjct: 852 CGSPLSH-CNRAG 863

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  285 bits (728), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 275/879 (31%), Positives = 422/879 (48%), Gaps = 114/879 (12%)

Query: 72  SFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANM 131
           S+  +  ++    R+++L+ + L     +        +L  L +  N+L   +   L+N+
Sbjct: 59  SWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNL 118

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
           TSL+ L + SNQLTG  P     LV +R L I +N+L G +P  L NL +L++L ++  +
Sbjct: 119 TSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCR 178

Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF-------NGEIYAETE 244
           LT  I S  L  L  ++ LIL +N+ + PI  E L N S L  F       NG I AE  
Sbjct: 179 LTGPIPSQ-LGRLVRVQSLILQDNYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELG 236

Query: 245 S---------HYNSLTPKF--------QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSH 287
                       NSLT +         QL  +SL      G  PK L    +L   DLS 
Sbjct: 237 RLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSA 296

Query: 288 LNLSGEFPN--W------------------LPE----NNTDLKTLLLANNSLFGSFRMPI 323
            NL+GE P   W                  LP+    NNT+L+ L+L+   L G   + +
Sbjct: 297 NNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVEL 356

Query: 324 HCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDI 383
              Q L  LD+SNN   G IP E    L  L  L L  N   G++  S +++  L+ L +
Sbjct: 357 SKCQSLKQLDLSNNSLAGSIP-EALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVL 415

Query: 384 SYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE 443
            +N L G +P+ ++     LE+L L  N   G I  E  N T+LK + + GN F GEIP 
Sbjct: 416 YHNNLEGKLPKEIS-ALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPP 474

Query: 444 SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLD 503
           S+ +   L  L+L  N L G +P  LG+   L  + + +N L G IP+ F  L  L+ L 
Sbjct: 475 SIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLM 534

Query: 504 LSNNSIFGTLP-SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYL---VT----------- 548
           L NNS+ G LP S +SL ++ +++LS N++ G +  +     YL   VT           
Sbjct: 535 LYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLE 594

Query: 549 ---------LDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL 599
                    L L  N+L G IP  + K+ +LS + +++N + G IP+QL   K++  IDL
Sbjct: 595 LGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDL 654

Query: 600 SHNNLSGHIPPCLVNTA------LSEGYYDAVAPTWDHASAPALSYFPPNGSPMGK---E 650
           ++N LSG IPP L   +      LS   +    PT +  +   L     +G+ +     +
Sbjct: 655 NNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPT-ELFNCTKLLVLSLDGNSLNGSIPQ 713

Query: 651 ETVQFTTKNM----SYYYRGRILTSMSGID------LSCNKLTGEIPTQIGYLTRIR-AL 699
           E       N+       + G +  +M  +       LS N LTGEIP +IG L  ++ AL
Sbjct: 714 EIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSAL 773

Query: 700 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759
           +LS+NN TG IP+T   L ++E+LDLS+N L G++P  +  + +L    V++NNL GK+ 
Sbjct: 774 DLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLK 833

Query: 760 DRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLIT 819
               QFS +  DS+ GN  LCG PLS+ C+            + N++    +   S +I 
Sbjct: 834 ---KQFSRWPADSFLGNTGLCGSPLSR-CN---------RVRSNNKQQG--LSARSVVII 878

Query: 820 FTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYY 858
             +S  +  IG++ +L I  ++++R  +  +V   S  Y
Sbjct: 879 SAIS-ALTAIGLM-ILVIALFFKQRHDFFKKVGHGSTAY 915

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  254 bits (650), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 218/711 (30%), Positives = 335/711 (47%), Gaps = 82/711 (11%)

Query: 154 ELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILS 213
           +L  LR L + N +L G +P  L NL+ L ++++ +N+    I +S + +L  +  LIL+
Sbjct: 108 KLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPAS-IGNLNQLRHLILA 166

Query: 214 NNHF--QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFP 271
           NN    +IP SL  L  L  L+ F+  +  +       L    QL ++SL+     G  P
Sbjct: 167 NNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLK---QLRNLSLASNNLIGEIP 223

Query: 272 KFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLAT 331
             L +  +L +  L+H  L GE P  +  N  +L+ +   NNSL G+  +    L KL+ 
Sbjct: 224 SSLGNLSNLVHLVLTHNQLVGEVPASI-GNLIELRVMSFENNSLSGNIPISFANLTKLSI 282

Query: 332 LDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGA 391
             +S+N F    P ++  +   L + ++S N+F+G  P S   +  L+S+ +  NQ TG 
Sbjct: 283 FVLSSNNFTSTFPFDMSIF-HNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGP 341

Query: 392 IPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLL 451
           I          L+ L L  N L G I      L NL+ L +  N F G IP ++SK   L
Sbjct: 342 IEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNL 401

Query: 452 GGLYLSDNHLSGKIPRWLGSL--------------------LALQDIIMPNNNLEGPIPN 491
             L LS N+L G++P  L  L                      ++++ + +N+ +GPIP 
Sbjct: 402 LHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPY 461

Query: 492 EFCQLDCLKVLDLSNNSIFGTLPSCLS--LGSIEQVHLSKNKIEGQLESIIHYYPYLVTL 549
             C+L  L  LDLSNN   G++PSC+    GSI++++L  N   G L  I      LV+L
Sbjct: 462 MICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSL 521

Query: 550 DLSYNRLHGSIP------------------------NWIDKLPQLSYILLANNYIEGEIP 585
           D+S+N+L G  P                        +W++ LP L  + L +N   G + 
Sbjct: 522 DVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLY 581

Query: 586 VQLCQL--KEVRLIDLSHNNLSGHIPPCLVN-----TALSEGYYDAVAPTWDHASAPALS 638
            +   +  + +R+ID+SHNN SG +PP   +     T L+E     +   W +A     S
Sbjct: 582 HRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYAD----S 637

Query: 639 YFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 698
           Y+            ++   K +   +  RI      ID S NK+ G IP  +GYL  +R 
Sbjct: 638 YY----------HEMEMVNKGVDMSFE-RIRRDFRAIDFSGNKINGNIPESLGYLKELRV 686

Query: 699 LNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKI 758
           LNLS N  T  IP   +NL ++E+LD+S N L G+IP  L  L+ L+    ++N L G +
Sbjct: 687 LNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPV 746

Query: 759 PDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTT---EAYTENEE 806
           P R  QF   +  S+  NP L G  L   C D G    T+   E  +E EE
Sbjct: 747 P-RGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEE 794

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  247 bits (630), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 233/753 (30%), Positives = 352/753 (46%), Gaps = 104/753 (13%)

Query: 128 LANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDV 187
           ++++ +L+ L +A NQ +G  PP    L  L+ L +  N L G LP  L+ L  L  LD+
Sbjct: 85  ISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDL 144

Query: 188 SYNQLTENISSSPLMHLTSIEELILSNNHF--QIPISLEPLFNLSKL----KTFNGEI-- 239
           S N  + ++  S  + L ++  L +SNN    +IP  +  L NLS L     +F+G+I  
Sbjct: 145 SDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPS 204

Query: 240 ----------YAETESHYNSLTPK-----FQLTSISLSGYGDGGTFPKFLYHQHDLNNAD 284
                     +A     +N   PK       L  + LS      + PK     H+L+  +
Sbjct: 205 EIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILN 264

Query: 285 LSHLNLSGEFPNWLPE--NNTDLKTLLLANNSLFGSFRMPIH------------------ 324
           L    L G  P   PE  N   LK+L+L+ NSL G   + +                   
Sbjct: 265 LVSAELIGLIP---PELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSL 321

Query: 325 --CLQKLATLD---VSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLK 379
              + K   LD   ++NN F G IP EI    P L HL+L+ N  +GSIP        L+
Sbjct: 322 PSWMGKWKVLDSLLLANNRFSGEIPHEI-EDCPMLKHLSLASNLLSGSIPRELCGSGSLE 380

Query: 380 SLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIG 439
           ++D+S N L+G I E +  GC SL  L L+NN + G I  + + L  L  L LD N F G
Sbjct: 381 AIDLSGNLLSGTI-EEVFDGCSSLGELLLTNNQINGSIPEDLWKLP-LMALDLDSNNFTG 438

Query: 440 EIPESLSKC---------------YL---------LGGLYLSDNHLSGKIPRWLGSLLAL 475
           EIP+SL K                YL         L  L LSDN L+G+IPR +G L +L
Sbjct: 439 EIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSL 498

Query: 476 QDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEG 534
             + +  N  +G IP E      L  LDL +N++ G +P  + +L  ++ + LS N + G
Sbjct: 499 SVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSG 558

Query: 535 QLESIIHYYPYLVTL------------DLSYNRLHGSIPNWIDKLPQLSYILLANNYIEG 582
            + S    Y + + +            DLSYNRL G IP  + +   L  I L+NN++ G
Sbjct: 559 SIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSG 618

Query: 583 EIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPP 642
           EIP  L +L  + ++DLS N L+G IP  + N+   +G         + A+     + P 
Sbjct: 619 EIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGL--------NLANNQLNGHIPE 670

Query: 643 NGSPMGKEETVQFTTKNMSYYYRGRI--LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALN 700
           +   +G    +  T   +       +  L  ++ +DLS N L+GE+ +++  + ++  L 
Sbjct: 671 SFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLY 730

Query: 701 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP- 759
           +  N  TG IP+   NL Q+E LD+S NLL G+IP ++  L  L    +A NNL G++P 
Sbjct: 731 IEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPS 790

Query: 760 DRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNG 792
           D V Q  +  +    GN  LCG  +   C   G
Sbjct: 791 DGVCQDPS--KALLSGNKELCGRVVGSDCKIEG 821

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  235 bits (600), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 204/656 (31%), Positives = 324/656 (49%), Gaps = 58/656 (8%)

Query: 137 LNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENI 196
           +++ S  L  + P        L++L I   +L G+LP  L +   L+VLD+S N L  +I
Sbjct: 86  IDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDI 145

Query: 197 SSSPLMHLTSIEELILSNNHF--QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKF 254
             S L  L ++E LIL++N    +IP  +     L  L  F+  +     +    L+   
Sbjct: 146 PWS-LSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLS--- 201

Query: 255 QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNS 314
            L  I + G                       +  +SG+ P+ + +  ++L  L LA  S
Sbjct: 202 GLEVIRIGG-----------------------NKEISGQIPSEIGDC-SNLTVLGLAETS 237

Query: 315 LFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFAD 374
           + G+    +  L+KL TL +      G IP ++G     L+ L L  N+ +GSIP     
Sbjct: 238 VSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGN-CSELVDLFLYENSLSGSIPREIGQ 296

Query: 375 MKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDG 434
           +  L+ L +  N L G IPE +   C +L+++ LS N L G I S    L+ L+   +  
Sbjct: 297 LTKLEQLFLWQNSLVGGIPEEIG-NCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISD 355

Query: 435 NKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFC 494
           NKF G IP ++S C  L  L L  N +SG IP  LG+L  L      +N LEG IP    
Sbjct: 356 NKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLA 415

Query: 495 QLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553
               L+ LDLS NS+ GT+PS L  L ++ ++ L  N + G +   I     LV L L +
Sbjct: 416 DCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGF 475

Query: 554 NRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLV 613
           NR+ G IP+ I  L +++++  ++N + G++P ++    E+++IDLS+N+L G +P  + 
Sbjct: 476 NRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPV- 534

Query: 614 NTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQ--FTTKNMSYYYRGRILTS 671
            ++LS      V+        PA          +G+  ++     +KN+   + G I TS
Sbjct: 535 -SSLSGLQVLDVSANQFSGKIPA---------SLGRLVSLNKLILSKNL---FSGSIPTS 581

Query: 672 M---SGI---DLSCNKLTGEIPTQIGYLTRIR-ALNLSHNNLTGTIPTTFSNLKQIESLD 724
           +   SG+   DL  N+L+GEIP+++G +  +  ALNLS N LTG IP+  ++L ++  LD
Sbjct: 582 LGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILD 641

Query: 725 LSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 780
           LS+N+L G + P L  +  L    ++YN+ SG +PD    F        EGN  LC
Sbjct: 642 LSHNMLEGDLAP-LANIENLVSLNISYNSFSGYLPDN-KLFRQLSPQDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  232 bits (592), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 211/729 (28%), Positives = 329/729 (45%), Gaps = 51/729 (6%)

Query: 86  ILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLT 145
           ++S+S        +L   +  L +LQ L +  N     +   +  +T L  L +  N  +
Sbjct: 74  VVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFS 133

Query: 146 GNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLT 205
           G+ P G  EL  +  L + NN L G +P  +   +SL ++   YN LT  I    L  L 
Sbjct: 134 GSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPEC-LGDLV 192

Query: 206 SIEELILSNNHF--QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSG 263
            ++  + + NH    IP+S+  L NL+ L     ++  +    + +L     L S+ L+ 
Sbjct: 193 HLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNL---LNLQSLVLTE 249

Query: 264 YGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPI 323
               G  P  + +   L   +L    L+G+ P  L  N   L+ L +  N L  S    +
Sbjct: 250 NLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELG-NLVQLQALRIYKNKLTSSIPSSL 308

Query: 324 HCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDI 383
             L +L  L +S N  +G I  EIG +L  L  L L  N F G  P S  +++ L  L +
Sbjct: 309 FRLTQLTHLGLSENHLVGPISEEIG-FLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTV 367

Query: 384 SYNQLTGAIPERMAM-----------------------GCFSLEILALSNNTLQGHIFSE 420
            +N ++G +P  + +                        C  L++L LS+N + G I   
Sbjct: 368 GFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEI-PR 426

Query: 421 KFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIM 480
            F   NL  + +  N F GEIP+ +  C  L  L ++DN+L+G +   +G L  L+ + +
Sbjct: 427 GFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQV 486

Query: 481 PNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESI 539
             N+L GPIP E   L  L +L L +N   G +P  +S L  ++ + +  N +EG +   
Sbjct: 487 SYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEE 546

Query: 540 IHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL 599
           +     L  LDLS N+  G IP    KL  L+Y+ L  N   G IP  L  L  +   D+
Sbjct: 547 MFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDI 606

Query: 600 SHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKN 659
           S N L+G IP  L+ +  +   Y   +      + P           +GK E VQ    +
Sbjct: 607 SDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPK---------ELGKLEMVQEIDLS 657

Query: 660 MSYYYRGRILTSMSG------IDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPT 712
            +  + G I  S+        +D S N L+G IP ++   +  I +LNLS N+ +G IP 
Sbjct: 658 -NNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQ 716

Query: 713 TFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDS 772
           +F N+  + SLDLS N L G+IP  L  L+TL   ++A NNL G +P+    F       
Sbjct: 717 SFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPES-GVFKNINASD 775

Query: 773 YEGNPFLCG 781
             GN  LCG
Sbjct: 776 LMGNTDLCG 784

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  232 bits (591), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 225/742 (30%), Positives = 357/742 (48%), Gaps = 76/742 (10%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTS------IEELI 211
           L  L + N +L GSL     +   + +  +    L EN  S P+  ++S      ++ L 
Sbjct: 110 LESLVLKNANLSGSLTSAAKSQCGVTLDSI---DLAENTISGPISDISSFGVCSNLKSLN 166

Query: 212 LSNNHFQIPISLEPL----FNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDG 267
           LS N F  P   E L    F+L  L      I       + S     +L   S+ G    
Sbjct: 167 LSKN-FLDPPGKEMLKGATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSIKGNKLA 225

Query: 268 GTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQ 327
           G+ P+  +   +L+  DLS  N S  FP++  ++ ++L+ L L++N  +G     +    
Sbjct: 226 GSIPELDFK--NLSYLDLSANNFSTVFPSF--KDCSNLQHLDLSSNKFYGDIGSSLSSCG 281

Query: 328 KLATLDVSNNFFLGHIPVEIGTYLPG--LMHLNLSRNAFNGSIPSSFADM-KMLKSLDIS 384
           KL+ L+++NN F+G +P      LP   L +L L  N F G  P+  AD+ K +  LD+S
Sbjct: 282 KLSFLNLTNNQFVGLVP-----KLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLS 336

Query: 385 YNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPE 443
           YN  +G +PE +   C SLE++ +SNN   G +  +    L+N+K + L  NKF+G +P+
Sbjct: 337 YNNFSGMVPESLGE-CSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPD 395

Query: 444 SLSKCYLLGGLYLSDNHLSGKIPRWL--GSLLALQDIIMPNNNLEGPIPNEFCQLDCLKV 501
           S S    L  L +S N+L+G IP  +    +  L+ + + NN  +GPIP+       L  
Sbjct: 396 SFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVS 455

Query: 502 LDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI 560
           LDLS N + G++PS L SL  ++ + L  N++ G++   + Y   L  L L +N L G I
Sbjct: 456 LDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPI 515

Query: 561 PNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTA---- 616
           P  +    +L++I L+NN + GEIP  L +L  + ++ L +N++SG+IP  L N      
Sbjct: 516 PASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIW 575

Query: 617 --LSEGYYDAVAPT--WDHASAPALS--------YFPPNGSP-------------MGKEE 651
             L+  + +   P   +  +   A++        Y   +GS              + +E+
Sbjct: 576 LDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQ 635

Query: 652 TVQFTTK---NMSYYYRGRIL------TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLS 702
             + +T+   N +  YRG          SM  +DLS NKL G IP ++G +  +  LNL 
Sbjct: 636 LDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLG 695

Query: 703 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRV 762
           HN+L+G IP     LK +  LDLSYN  +G IP  L  L  L    ++ NNLSG IP+  
Sbjct: 696 HNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPES- 754

Query: 763 AQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTV 822
           A F TF +  +  N  LCG PL   C  +G  +   +    +    SL    +  + F++
Sbjct: 755 APFDTFPDYRFANNS-LCGYPLPLPC-SSGPKSDANQHQKSHRRQASLAGSVAMGLLFSL 812

Query: 823 SYGIVIIGIIGVLYINPYWRRR 844
                I G+I ++ I    RRR
Sbjct: 813 ---FCIFGLI-IVAIETKKRRR 830

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  231 bits (588), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 222/741 (29%), Positives = 355/741 (47%), Gaps = 74/741 (9%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTS------IEELI 211
           L  L + N +L GSL     +   + +  +    L EN  S P+  ++S      ++ L 
Sbjct: 110 LESLVLKNANLSGSLTSAAKSQCGVTLDSI---DLAENTISGPISDISSFGVCSNLKSLN 166

Query: 212 LSNNHFQIP---ISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGG 268
           LS N    P   +     F+L  L      I       + S     +L   SL G    G
Sbjct: 167 LSKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGNKLAG 226

Query: 269 TFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQK 328
           + P+  +   +L+  DLS  N S  FP++  ++ ++L+ L L++N  +G     +    K
Sbjct: 227 SIPELDFK--NLSYLDLSANNFSTVFPSF--KDCSNLQHLDLSSNKFYGDIGSSLSSCGK 282

Query: 329 LATLDVSNNFFLGHIPVEIGTYLPG--LMHLNLSRNAFNGSIPSSFADM-KMLKSLDISY 385
           L+ L+++NN F+G +P      LP   L +L L  N F G  P+  AD+ K +  LD+SY
Sbjct: 283 LSFLNLTNNQFVGLVP-----KLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSY 337

Query: 386 NQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFN-LTNLKRLQLDGNKFIGEIPES 444
           N  +G +PE +   C SLE++ +S N   G +  +  + L+N+K + L  NKF+G +P+S
Sbjct: 338 NNFSGMVPESLGE-CSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDS 396

Query: 445 LSKCYLLGGLYLSDNHLSGKIPRWL--GSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL 502
            S    L  L +S N+L+G IP  +    +  L+ + + NN  +GPIP+       L  L
Sbjct: 397 FSNLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSL 456

Query: 503 DLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP 561
           DLS N + G++PS L SL  ++ + L  N++ G++   + Y   L  L L +N L G IP
Sbjct: 457 DLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIP 516

Query: 562 NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTA----- 616
             +    +L++I L+NN + GEIP  L +L  + ++ L +N++SG+IP  L N       
Sbjct: 517 ASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWL 576

Query: 617 -LSEGYYDAVAPT--WDHASAPALS--------YFPPNGSP-------------MGKEET 652
            L+  + +   P   +  +   A++        Y   +GS              + +E+ 
Sbjct: 577 DLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQL 636

Query: 653 VQFTTK---NMSYYYRGRIL------TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 703
            + +T+   N +  YRG          SM  +DLS NKL G IP ++G +  +  LNL H
Sbjct: 637 DRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGH 696

Query: 704 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVA 763
           N+L+G IP     LK +  LDLSYN  +G IP  L  L  L    ++ NNLSG IP+  A
Sbjct: 697 NDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPES-A 755

Query: 764 QFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVS 823
            F TF +  +  N  LCG PL   C  +G  +   +    +    SL    +  + F++ 
Sbjct: 756 PFDTFPDYRFANNS-LCGYPLPIPC-SSGPKSDANQHQKSHRRQASLAGSVAMGLLFSL- 812

Query: 824 YGIVIIGIIGVLYINPYWRRR 844
               I G+I ++ I    RRR
Sbjct: 813 --FCIFGLI-IVAIETKKRRR 830

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  226 bits (577), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 208/703 (29%), Positives = 319/703 (45%), Gaps = 74/703 (10%)

Query: 86  ILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLT 145
           + S+  + +N +  L   +C+L  L++L +  N +   +   L+   SL+VL++ +N+  
Sbjct: 69  VTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFH 128

Query: 146 GNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLT 205
           G  P     ++ L++LY+  N L GS+P  + NL+SL+ L +  N LT  I  S      
Sbjct: 129 GVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPS------ 182

Query: 206 SIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYG 265
                                  ++KL+                     QL  I     G
Sbjct: 183 -----------------------MAKLR---------------------QLRIIRAGRNG 198

Query: 266 DGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHC 325
             G  P  +     L    L+   L G  P  L E   +L  L+L  N L G     +  
Sbjct: 199 FSGVIPSEISGCESLKVLGLAENLLEGSLPKQL-EKLQNLTDLILWQNRLSGEIPPSVGN 257

Query: 326 LQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISY 385
           + +L  L +  N+F G IP EIG  L  +  L L  N   G IP    ++     +D S 
Sbjct: 258 ISRLEVLALHENYFTGSIPREIGK-LTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSE 316

Query: 386 NQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL 445
           NQLTG IP+       +L++L L  N L G I  E   LT L++L L  N+  G IP+ L
Sbjct: 317 NQLTGFIPKEFGH-ILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQEL 375

Query: 446 SKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLS 505
                L  L L DN L GKIP  +G       + M  N+L GPIP  FC+   L +L L 
Sbjct: 376 QFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLG 435

Query: 506 NNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI 564
           +N + G +P  L +  S+ ++ L  N++ G L   +     L  L+L  N L G+I   +
Sbjct: 436 SNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADL 495

Query: 565 DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDA 624
            KL  L  + LANN   GEIP ++  L ++   ++S N L+GHIP  L +    +     
Sbjct: 496 GKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQ----- 550

Query: 625 VAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRI------LTSMSGIDLS 678
                D +      Y       +   E ++ +   ++    G I      LT +  + L 
Sbjct: 551 ---RLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLT----GEIPHSFGDLTRLMELQLG 603

Query: 679 CNKLTGEIPTQIGYLTRIR-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 737
            N L+  IP ++G LT ++ +LN+SHNNL+GTIP +  NL+ +E L L+ N L G+IP  
Sbjct: 604 GNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPAS 663

Query: 738 LIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 780
           +  L +L +  ++ NNL G +PD  A F   +  ++ GN  LC
Sbjct: 664 IGNLMSLLICNISNNNLVGTVPD-TAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  224 bits (570), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 214/732 (29%), Positives = 334/732 (45%), Gaps = 87/732 (11%)

Query: 104 LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLT--GNFPPGFCELVLLREL 161
           L  L +LQ LY++ N           +   LQVL+++SN ++        F +   L  +
Sbjct: 98  LTALPNLQNLYLQGNYFSSGGD-SSGSDCYLQVLDLSSNSISDYSMVDYVFSKCSNLVSV 156

Query: 162 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHL-TSIEELILSNNHFQIP 220
            I NN L G L    ++L SL  +D+SYN L++ I  S +     S++ L L++N+    
Sbjct: 157 NISNNKLVGKLGFAPSSLQSLTTVDLSYNILSDKIPESFISDFPASLKYLDLTHNNLSGD 216

Query: 221 ISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDL 280
            S +  F +    TF                  F L+  +LSG      FP  L +   L
Sbjct: 217 FS-DLSFGICGNLTF------------------FSLSQNNLSG----DKFPITLPNCKFL 253

Query: 281 NNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFL 340
              ++S  NL+G+ PN                   +GSF       Q L  L +++N   
Sbjct: 254 ETLNISRNNLAGKIPN----------------GEYWGSF-------QNLKQLSLAHNRLS 290

Query: 341 GHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGC 400
           G IP E+      L+ L+LS N F+G +PS F     L++L++  N L+G     +    
Sbjct: 291 GEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKI 350

Query: 401 FSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE---SLSKCYLLGGLYLS 457
             +  L ++ N + G +     N +NL+ L L  N F G +P    SL    +L  + ++
Sbjct: 351 TGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIA 410

Query: 458 DNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPS-- 515
           +N+LSG +P  LG   +L+ I +  N L GPIP E   L  L  L +  N++ GT+P   
Sbjct: 411 NNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGV 470

Query: 516 CLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL 575
           C+  G++E + L+ N + G +   I     ++ + LS NRL G IP+ I  L +L+ + L
Sbjct: 471 CVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQL 530

Query: 576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAP 635
            NN + G +P QL   K +  +DL+ NNL+G +P  L + A        V P     S  
Sbjct: 531 GNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQA------GLVMP--GSVSGK 582

Query: 636 ALSYFPPNGSP--MGKEETVQFT--------------TKNMSYYYRGRILTSMSG----- 674
             ++    G     G    V+F               +   +  Y G  + + S      
Sbjct: 583 QFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMI 642

Query: 675 -IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 733
             D+S N ++G IP   G +  ++ LNL HN +TGTIP +F  LK I  LDLS+N L G 
Sbjct: 643 YFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGY 702

Query: 734 IPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGL 793
           +P  L  L+ L+   V+ NNL+G IP    Q +TF    Y  N  LCG+PL + C     
Sbjct: 703 LPGSLGSLSFLSDLDVSNNNLTGPIPFG-GQLTTFPVSRYANNSGLCGVPL-RPCGSAPR 760

Query: 794 TTVTTEAYTENE 805
             +T+  + + +
Sbjct: 761 RPITSRIHAKKQ 772

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	874
255581263	912	serine-threonine protein kinase, plant-t	0.922	0.883	0.496	0.0
224142481	781	predicted protein [Populus trichocarpa]	0.830	0.929	0.482	0.0
224134891	953	predicted protein [Populus trichocarpa]	0.943	0.865	0.421	1e-168
224073436	1014	predicted protein [Populus trichocarpa]	0.979	0.844	0.414	1e-164
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.921	0.549	0.430	1e-164
224073382	1309	predicted protein [Populus trichocarpa]	0.818	0.546	0.444	1e-161
224123984	1016	predicted protein [Populus trichocarpa]	0.882	0.758	0.429	1e-159
224073422	969	predicted protein [Populus trichocarpa]	0.868	0.783	0.429	1e-159
224124490	981	predicted protein [Populus trichocarpa]	0.973	0.867	0.409	1e-154
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.958	0.816	0.403	1e-154

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/854 (49%), Positives = 546/854 (63%), Gaps = 48/854 (5%)

Query: 30  SSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSL 89
           ++  Y S R   L  +L    F E K+L  L  + ++  V+    + +S  ++SL +L L
Sbjct: 78  TTRAYQSSRNWYLNASLF-LPFEELKSLS-LKGNSIVDCVENEGFERLSTRLSSLEVLDL 135

Query: 90  SYSRLNKNT-----------------------ILDQGLCELVHLQELYIRDNDLRDSLLW 126
           SY+  N++                        I  Q L    +L+ELY+   +L +S L 
Sbjct: 136 SYNSFNESILSSLSEFSSLKSLNLGFNPFEVPIQAQDLPNFENLEELYLDKIELENSFLQ 195

Query: 127 CLANMTSLQVLNVASNQLTGNFP--PGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRV 184
            +  MTSL+VL+++   LTG  P   G CEL+ LR L + +N+  G LP CL+NLTSL++
Sbjct: 196 TVGVMTSLKVLSLSGCGLTGALPNVQGLCELIHLRVLDVSSNEFHGILPWCLSNLTSLQL 255

Query: 185 LDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE---IYA 241
           LD+S NQ   +IS+SPL  L S+ +L +SNNHFQ+P SL P FN S LK   G+   IY 
Sbjct: 256 LDLSSNQFVGDISNSPLKILKSLVDLDVSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYL 315

Query: 242 ETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPEN 301
           E E H     P+FQL SI  SGYG  GTFP FLYHQ++L   DLSHL+L GEFPNWL  N
Sbjct: 316 EAELHS---APRFQLISIIFSGYGICGTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTN 372

Query: 302 NTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSR 361
           NT L+ L L NNSL G  ++P+H    L  LD+SNN    HIP+EIGT+LP L  LN+S 
Sbjct: 373 NTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGTFLPKLELLNMSS 432

Query: 362 NAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK 421
           N F+GSIPSSF +M  L+ LD+S NQL+G+IPE +A GCFSL  L LSNN+LQG +FS++
Sbjct: 433 NGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQ 492

Query: 422 FNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMP 481
           FNLTNL  L+LD N F G IP+SLSK   L  + LSDNHLSG IP W+G+L  LQ++I+ 
Sbjct: 493 FNLTNLWWLELDKNHFSGRIPKSLSKSA-LSIMDLSDNHLSGMIPGWIGNLSYLQNLILS 551

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH 541
           NN L+GPIP EFCQL  L+VLDL+NNS+ G LPSCLS  SI  VHLS+N IEG   +   
Sbjct: 552 NNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQNMIEGPWTNAFS 611

Query: 542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSH 601
              +LVTLDLS NR+ G IP  I  +  L  + L +N  +GEIP Q+C L ++ LI L+ 
Sbjct: 612 GSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQICGLYQLSLIVLAD 671

Query: 602 NNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMS 661
           NNLSG IP CL    L +   D++AP       P   Y+ P   PM       FTTK  S
Sbjct: 672 NNLSGSIPSCL---QLDQS--DSLAPDVPPVPNPLNPYYLP-VRPM------YFTTKRRS 719

Query: 662 YYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE 721
           Y Y+G+IL+ +SGID SCNKLTGEIP ++G  + I +LNLS+N  TG IP+TFSNLKQIE
Sbjct: 720 YSYQGKILSYISGIDFSCNKLTGEIPPEMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIE 779

Query: 722 SLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 781
           SLDLSYN L+G IP QL+ L  L+ F VA+NNL GK P R  QF+TFE  SYEGNP LCG
Sbjct: 780 SLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCG 839

Query: 782 LPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVLYINPYW 841
           LPL KSC +   ++    +  + E   + +DM++F  +F VSY  VIIG+  VLYINP W
Sbjct: 840 LPLPKSCTEREASSAPRASAMDEES--NFLDMNTFYGSFIVSYTFVIIGMFLVLYINPQW 897

Query: 842 RRRWFYLVEVCMTS 855
           RR WF  V++C++S
Sbjct: 898 RRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/791 (48%), Positives = 503/791 (63%), Gaps = 65/791 (8%)

Query: 106 ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFP-PGFCELVLLRELYID 164
            L  L+ L +  N + DS L  L  ++SL+ LN+ +NQL G+    G CEL  L+EL I 
Sbjct: 26  RLNKLEILELSFNKINDSTLSFLEGLSSLKHLNLDNNQLKGSIDMKGLCELKQLQELDIS 85

Query: 165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLE 224
            NDL G LP CL NL +L+VLD+S+N  + NIS S +  LTSI +L LS+NHFQIPISL 
Sbjct: 86  YNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRIGSLTSIRDLKLSDNHFQIPISLG 144

Query: 225 PLFNLSKLKTFNG---EIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLN 281
           P FNLS LK  NG   EIY  TE  +N L P+FQL  +SL+ +G GGTFPKFLY+QHDL 
Sbjct: 145 PFFNLSNLKNLNGDHNEIYESTELVHN-LIPRFQLQRLSLACHGFGGTFPKFLYYQHDLQ 203

Query: 282 NADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLG 341
             DLSH+ + GEFP+WL +NNT L+ L L N+SL GS ++P      L+ LD+S N    
Sbjct: 204 FVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQN 263

Query: 342 HIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF 401
            IP +IG Y P L  LNLSRN F+GSIPSS ++M  L  LD+S N L+G IPE++  GC 
Sbjct: 264 QIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCL 323

Query: 402 SLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 461
           SL  L LSNN L+G  F   FNL  L  L L GN+  G +P SLS    L  L +S N+L
Sbjct: 324 SLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNL 383

Query: 462 SGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLG 520
           SGKIPRW+G + +LQ                         LDLS N+++G+LPS   S  
Sbjct: 384 SGKIPRWIGYMSSLQ------------------------YLDLSENNLYGSLPSSFCSSR 419

Query: 521 SIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI 580
           ++ +V+LSKNK+EG L   +     L  LDLS+N   G IP  I  L +LS++LL  N +
Sbjct: 420 TMTEVYLSKNKLEGSLIGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNL 479

Query: 581 EGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYF 640
           EG+IP QLC+L+++ LIDLSHN+L GHI PCL  T+            W      +L+  
Sbjct: 480 EGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTS-----------KWQRERETSLN-- 526

Query: 641 PPNGSPMGKE-------------------ETVQFTTKNMSYYYRGRILTSMSGIDLSCNK 681
            P+G+ +G+E                   ++V+FTTK++SY ++G IL  +SGIDLSCN 
Sbjct: 527 -PSGNSLGRENRGPQIVFPVPAVEDPSMNKSVEFTTKSISYSFKGIILKYISGIDLSCNN 585

Query: 682 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL 741
           LTGEIP ++G L+ I+ LNLSHN+LTG IP TFSNLK+IESLDLSYN L+G+IP QL+ L
Sbjct: 586 LTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDL 645

Query: 742 NTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAY 801
           N L+ F VA+NNLSGK P+ VAQFSTF +  YEGNP LCG PL+++C      +    + 
Sbjct: 646 NFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPSPLPRSQ 705

Query: 802 TENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVA 861
           T  +E + +IDM++F++TF+V+Y +V++ I  VLYINP WRR WFY +   + +CYYF+ 
Sbjct: 706 THKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGESINNCYYFLV 765

Query: 862 DNLTL-RRFYR 871
           DNL +  RF R
Sbjct: 766 DNLPVPARFRR 776

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 366/869 (42%), Positives = 506/869 (58%), Gaps = 44/869 (5%)

Query: 29  FSSLKYLSMRGCVLKGALHGQDFHEFKN-LEHLVMDRMLVEVDTSFLQIVSESMASLRIL 87
           F  L+ L +    L G L  + F    + L +L +       D S L   + ++++L+ L
Sbjct: 96  FKELQSLDLGMTSLVGCLENEGFEVLSSKLRNLDLSANGFNNDKSILSCFNGNLSTLKSL 155

Query: 88  SLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGN 147
            LS + L   T           L+ELY+ +  LR + L  +  + +L+VL+VA   L G 
Sbjct: 156 DLSANGL---TAGSGTFFNSSTLEELYLDNTSLRINFLQNIGALPALKVLSVAECDLHGT 212

Query: 148 FPP-GFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTS 206
            P  G+CEL  L++L +  N+  GSLP CL NL+SL++LDVS NQ T N +S PL +L S
Sbjct: 213 LPAQGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQLLDVSENQFTGNFTSGPLTNLIS 272

Query: 207 IEELILSNNHFQIPISLEPLFNLSKLKTFNGE--IYAETESHYNSLTPKFQLTSISLSGY 264
           +E L+LSNN F++PIS++P  N S LK F+ E          +++L PKFQL    LS  
Sbjct: 273 LEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLVTEPVAFDNLIPKFQLVFFRLSSS 332

Query: 265 GDG---GTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRM 321
                    P FLY+Q DL   DLSH N++G FP+WL +NNT L+ L L+ N   G+ ++
Sbjct: 333 PTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSANFFVGTLQL 392

Query: 322 PIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSL 381
             H    +  LD+SNN   G I  +I    P L  L +++N F G IPS   ++  L  L
Sbjct: 393 QDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLRMAKNGFTGCIPSCLGNISSLLFL 452

Query: 382 DISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEI 441
           D+S NQL+    E++     ++ +L LSNN+L G I +  FN +  + L L+GN F G+I
Sbjct: 453 DLSNNQLSTVQLEQL-----TIPVLKLSNNSLGGQIPTSVFNSSTSQFLYLNGNNFSGQI 507

Query: 442 PE-SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLK 500
            +  L     L  L LS+N  SG +PR   +   L+ + +  N+ +GPIP +FC+L  L+
Sbjct: 508 SDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRVLDLSKNHYKGPIPKDFCKLGRLQ 567

Query: 501 VLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI 560
            LDLS N++ G +PSC S   +  VHLSKN++ G L        YLVT+DL  N L GSI
Sbjct: 568 YLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLTYGFFNSSYLVTMDLRDNSLTGSI 627

Query: 561 PNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEG 620
           PNWI     LS +LL  N+ +GE+PVQLC L+++ ++D+S N LSG +P CL N    E 
Sbjct: 628 PNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKES 687

Query: 621 YYDAVAPTWDHASAPAL-----SYFPPNGSPM-------GK-------EETVQFTTKNMS 661
              A     D  ++  L     +Y+   G P+       GK       EE ++F TKNM 
Sbjct: 688 SQKARM---DLGASIVLESMEKAYYKTMGPPLVDSVYLLGKDFRLNFTEEVIEFRTKNMY 744

Query: 662 YYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE 721
           Y Y+G IL+ MSGIDLS N   G IP + G L+ IR+LNLSHNN T +IP TFSNLKQIE
Sbjct: 745 YGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLNLSHNNPTESIPATFSNLKQIE 804

Query: 722 SLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 781
           SLDLSYN L+G IPPQL  + TL VF VA+NNLSG  P+R  QF TF+E  YEGNPFLCG
Sbjct: 805 SLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPERKYQFGTFDESCYEGNPFLCG 864

Query: 782 LPLSKSCDDNGLTTVTTEAYTENEEGD-SLIDMDSFLITFTVSYGIVIIGIIGVLYINPY 840
            PL  +C    +  V+++   ++E+GD   IDM+ F I+F V Y +V++ I  VLYINPY
Sbjct: 865 PPLRNNC---SVEPVSSQPVPDDEQGDVGFIDMEFFYISFGVCYTVVVMTIAAVLYINPY 921

Query: 841 WRRRWFYLVEVCMTSCYYFVADNLTLRRF 869
           WRRRW Y +E C+ +CYYF+    + R+F
Sbjct: 922 WRRRWLYFIEDCIDTCYYFMV--ASFRKF 948

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  587 bits (1512), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 371/896 (41%), Positives = 526/896 (58%), Gaps = 40/896 (4%)

Query: 5    TNLEELILVESDLHVSQ-LLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMD 63
            +NL  L L ++  +  + +L  +   S+LK L + G  L G+         + L++L + 
Sbjct: 123  SNLRNLDLSDNRFNNDKSILSCMTGLSTLKSLDLSGNGLTGSGFEIISSHLEKLDNLDLS 182

Query: 64   RMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDS 123
              +   + S L  +   ++ L+ L+LS + L  +T ++        L+ELY+    L  +
Sbjct: 183  YNIF--NDSILSHL-RGLSYLKSLNLSGNMLLGSTTVNGTFFNSSTLEELYLDRTSLPIN 239

Query: 124  LLWCLANMTSLQVLNVASNQLTGNFPP-GFCELVLLRELYIDNNDLRGSLPLCLANLTSL 182
             L  +  +  L+VL+VA   L G  P  G+CEL  LR+L +  N+L GSLP CL NL+SL
Sbjct: 240  FLQNIGALPDLKVLSVAECDLHGTLPAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSSL 299

Query: 183  RVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE--IY 240
            ++LDVS NQ T NI+S PL +LTS+E L LSNN F++PIS++P  N S LK F+ E    
Sbjct: 300  QLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKL 359

Query: 241  AETESHYNSLTPKFQLTSISLSGYGDG--GTFPKFLYHQHDLNNADLSHLNLSGEFPNWL 298
                + +++L PKFQL    LS   +      P FLY+Q+D+   DLSH N++  FP+WL
Sbjct: 360  VTEPAAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWL 419

Query: 299  PENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLN 358
             +NNT L+ L L+NNS  G+ ++  H    +  LD+SNN   G IP +I    P +  L 
Sbjct: 420  LKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLR 479

Query: 359  LSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF 418
            ++ N F G IPS   ++  LK LD+S NQL+    E++     ++  L LSNN L G + 
Sbjct: 480  MANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLT----TIWFLKLSNNNLGGQLP 535

Query: 419  SEKFNLTNLKRLQLDGNKFIGEIPESLSKCY-LLGGLYLSDNHLSGKIPRWLGSLLALQD 477
            +  FN + L+ L L GN F G+I + L   + +   L LSDN  SG +PRWL +   L  
Sbjct: 536  TSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIA 595

Query: 478  IIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLE 537
            I +  N  +GPI  +FC+L+ L+ LDLS N++ G +PSC S   I  VHLS+N++ G L 
Sbjct: 596  IDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLT 655

Query: 538  SIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLI 597
               +    LVT+DL  N   GS PNWI  L  LS +LL  N+ +GE+PVQLC L+++ ++
Sbjct: 656  YGFYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSIL 715

Query: 598  DLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPAL--SYFPPNGSPMGK------ 649
            D+S N LSG +P CL N    E     +A       + ++  +Y+   G P+ +      
Sbjct: 716  DVSQNQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLR 775

Query: 650  --------EETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL 701
                    EE ++FTTKNM Y Y+G+ L+ MSGIDLS N   G IP + G L++I +LNL
Sbjct: 776  KGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNL 835

Query: 702  SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDR 761
            SHNNLTG+IP TFSNLKQIESLDLSYN L+G IPPQL  + TL VF VA+NNLSG  P+R
Sbjct: 836  SHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPER 895

Query: 762  VAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTT-------VTTEAYTENEEG-DSLIDM 813
              QF TF+E  YEGNPFLCG PL  +C +  + +       V ++    +E+G D  IDM
Sbjct: 896  KYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDM 955

Query: 814  DSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLTLRRF 869
            + F I F V Y +V++ I+ VLYI+PYWRRRW Y +E C+ +CYYFV    + R+F
Sbjct: 956  EFFYINFGVCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVV--ASFRKF 1009

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 372/865 (43%), Positives = 502/865 (58%), Gaps = 60/865 (6%)

Query: 41   VLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVS-ESMASLRILSLSYSRLNKNTI 99
            +L+G++  Q+     NLE L + +  +E   SF+     +S+  LR+L L  +  N +T+
Sbjct: 606  ILEGSI--QELAALHNLEELDLSKNDLE---SFITTTGLKSLRKLRVLHLETNDFNISTL 660

Query: 100  LDQGLCELVHLQELYIRDNDLR-------------------------DSLLWCLANMTSL 134
              + L  L  L+ELY+  N L                           S+L  +  MTSL
Sbjct: 661  --KSLGRLSLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNISSSILQIVEVMTSL 718

Query: 135  QVLNVASNQLTGNFPP--GFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQL 192
            + L++ SN + G+     G C+L  L+EL + +N   GS+  CL NLTSLR LD+S N+ 
Sbjct: 719  KALSLRSNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRF 778

Query: 193  TENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN---GEIYAETESHYNS 249
            + N+ SS    L  +E L LS+N FQ    +      SKL+  +   G      ES   +
Sbjct: 779  SGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLESEDQT 838

Query: 250  LTPKFQLTSISLSG-YGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTL 308
              P FQL    LS      G+ P FL++QHDL   DLS+ +L  +FP WL +NNT L+ L
Sbjct: 839  WVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEEL 898

Query: 309  LLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSI 368
             L NNSL G F +P       + +D+SNN   G +P  I   LP LM LN+SRN+F GSI
Sbjct: 899  NLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSI 958

Query: 369  PSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLK 428
            PS F  M+ L  LD+S N  TG IPE +AMGC SLE L LS N L G +F    NL +L+
Sbjct: 959  PS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLR 1017

Query: 429  RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGP 488
             L+LD N F G+IP+ LS    L  LY+S N +SGK+P W+G++  L  ++MPNN+LEGP
Sbjct: 1018 HLELDDNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGP 1076

Query: 489  IPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVT 548
            IP EFC LD L++LDLSNN++ G+LPSC S   +  VHL +N + G L         L T
Sbjct: 1077 IPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLAT 1136

Query: 549  LDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI 608
            LD+  N L G IP+WI     LS +LL  N+ +G+IP QLCQL ++ ++DLS+N+LSGHI
Sbjct: 1137 LDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHI 1196

Query: 609  PPCL----VNTALSEGYYDAV----APTWD----HASAPALSYFPPNGSPMGKEETV-QF 655
            P CL      T    G +  +    +P +     H+    LS    N  P+  ++ + +F
Sbjct: 1197 PSCLNKIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEF 1256

Query: 656  TTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFS 715
            TTKN + +Y+G  L SM+GIDLS NKLTG IP +IG L+++ ALNLSHN LTG IP  FS
Sbjct: 1257 TTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFS 1316

Query: 716  NLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEG 775
             LK IESLDLSYN L G IP +L  L  LAVF VAYNNLSGKIP+  AQF TF E+SY G
Sbjct: 1317 GLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVG 1376

Query: 776  NPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVL 835
            NP+LCG  L K+C      +   E     E    L D D F ++F  SY +V++G+  VL
Sbjct: 1377 NPYLCGSLLRKNC------SRAEEEAEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVL 1430

Query: 836  YINPYWRRRWFYLVEVCMTSCYYFV 860
            YIN  WR++WF++++V +T C  FV
Sbjct: 1431 YINGGWRKKWFHVIDVLITCCCNFV 1455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 337/759 (44%), Positives = 460/759 (60%), Gaps = 44/759 (5%)

Query: 141  SNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSP 200
            +N  TG+   G+CE+  L++L +  N+  GSLP CL NL+SL++LD+S NQ T NI+ SP
Sbjct: 560  NNMFTGS---GWCEMKNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSP 616

Query: 201  LMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF---NGEIYAETESHYNSLTPKFQLT 257
            L +L S+E L LSNN F++P S++P  N S LK F   N  +  E  + ++ L PKFQL 
Sbjct: 617  LTNLISLEFLSLSNNLFEVPTSMKPFMNHSSLKFFCNENNRLVIEPAA-FDHLIPKFQLV 675

Query: 258  SISLSGYGDG--GTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL 315
              SLS   +      P FLY+Q+ L   DLSH N++G FP+WL +NNT L+ L L+ NS+
Sbjct: 676  FFSLSKTTEALNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSI 735

Query: 316  FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADM 375
             G+ ++  H   K+  LD+SNN   G IP +I    P L  L +++N F G IPS   +M
Sbjct: 736  VGTLQLQDHPYPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNM 795

Query: 376  KMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGN 435
              L  LD+S NQL+    E +     ++  L LSNN L G I +  FN +  + L L  N
Sbjct: 796  SSLGVLDLSNNQLSTVKLELLT----TIWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDN 851

Query: 436  KFIGEIPES-LSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEF- 493
             F G+I +S L+       L LS+N  SG +PRW  +   L  I +  N+ EGPI   F 
Sbjct: 852  NFWGQISDSPLNGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFF 911

Query: 494  CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553
            C+LD L+ LDLS N++FG +PSC +   I  VHLSKN++ G L+   +    LVT+DL  
Sbjct: 912  CKLDQLEYLDLSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKYEFYNSSSLVTMDLRD 971

Query: 554  NRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLV 613
            N   GSIPNW+  L  LS +LL  N+++GE+PVQLC L+++ ++D+S N LSG +P CL 
Sbjct: 972  NSFTGSIPNWVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLE 1031

Query: 614  NTALSE--------------------GYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV 653
            N    E                     Y + + P   ++    L  + PN +    EE +
Sbjct: 1032 NLTFKESSQKALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFT----EEVI 1087

Query: 654  QFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT 713
            +FTTKNM Y Y+G+IL+ MSGIDLS N   G IP + G L+ I +LNLSHNNLTG+IP T
Sbjct: 1088 EFTTKNMYYGYKGKILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPAT 1147

Query: 714  FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSY 773
            FSNLK+IESLDLSYN  +G IPPQL  + TL VF VA+NNLSGK P+R  QF TF+E  Y
Sbjct: 1148 FSNLKRIESLDLSYNNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCY 1207

Query: 774  EGNPFLCGLPLSKSCDDNGLTT---VTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIG 830
            EGNPFLCG PL  +C +  + +   ++     + +E D  IDM+ F I+F+V Y +V++ 
Sbjct: 1208 EGNPFLCGPPLRNNCSEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMT 1267

Query: 831  IIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLTLRRF 869
            I  VLYINPYWRRRW Y +E C+ +CYYFV    + R+F
Sbjct: 1268 IAAVLYINPYWRRRWLYFIEDCIDTCYYFVV--ASFRKF 1304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 344/801 (42%), Positives = 470/801 (58%), Gaps = 30/801 (3%)

Query: 81   MASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVA 140
             +SL+ L LSY+ L  +T ++        L+ELY+  + L  + L  +  + +L+VL+  
Sbjct: 213  FSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGSSLPLNFLHNIGVLPALKVLSAG 272

Query: 141  SNQLTGNFPP-GFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSS 199
               L G  P  G C L  L +L++  N+L GSLP C  NL+SL++LDVS NQ   NI+SS
Sbjct: 273  ECDLNGTLPAQGLCGLKNLEQLFLSENNLEGSLPDCFKNLSSLQLLDVSRNQFIGNIASS 332

Query: 200  PLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF---NGEIYAETESHYNSLTPKFQL 256
            PL +L S+E + LSNNHFQ+PIS++P  N S L+ F   N  +  E  S ++ L PKFQL
Sbjct: 333  PLTNLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFSSDNNRLVTEPMS-FHDLIPKFQL 391

Query: 257  TSISLSGYGDGG---TFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANN 313
               SLS           P FLY+QHDL   DLS  +  G FP+WL +NNT L+ L L  N
Sbjct: 392  VFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNEN 451

Query: 314  SLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA 373
            S FG+ ++  H    +  +D+SNN   G IP  I      L  L +++N   G IPS   
Sbjct: 452  SFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKNGLTGCIPSCLG 511

Query: 374  DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLD 433
            +   L  LD+S NQL+    E+      +L  L LSNN L G + +   N + L  L L 
Sbjct: 512  NSSSLGVLDLSNNQLSMVELEQF----ITLTFLKLSNNNLGGQLPASMVNSSRLNYLYLS 567

Query: 434  GNKFIGEI---PESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP 490
             N F G+I   P  +   + +  L LS+N  SG +PRW  +L  +  I +  N+  GPIP
Sbjct: 568  DNNFWGQISDFPSPIKTIWPV--LDLSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNGPIP 625

Query: 491  NEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLD 550
             EFC+LD LK LDLS+N++F ++PSC +   I  VHLSKN++ G L    +    LVTLD
Sbjct: 626  VEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPLTYGFYNSSSLVTLD 685

Query: 551  LSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP 610
            L  N   GSI NWI  L  LS +LL  N  +GE  VQLC L+++ ++D+S N LSG +P 
Sbjct: 686  LRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQNQLSGPLPS 745

Query: 611  CLVNTALSEGYYDAVAPTWDHASAPAL--SYFPPNGS---------PMGKEETVQFTTKN 659
            CL N +  E Y  A      H  +  +  +Y+  N +         P+  EE ++FT K+
Sbjct: 746  CLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIPITTEEVIEFTAKS 805

Query: 660  MSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQ 719
            M Y Y+G+IL+ MSGIDLS NK +G IP ++G L+ + ALNLSHNNLTG+IP TFSNLKQ
Sbjct: 806  MYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNLTGSIPATFSNLKQ 865

Query: 720  IESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL 779
            IES DLSYN L G IP +L  + TL VF VA+NNLSG+ P+R  QF TF+E SYEGNPFL
Sbjct: 866  IESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSGETPERKYQFGTFDESSYEGNPFL 925

Query: 780  CGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVLYINP 839
            CG PL  +C +    + +     + +E D  IDM+ F I+  V Y +V++GI  VLYINP
Sbjct: 926  CGPPLQNNCSEE--ESPSLPMPNDKQEDDGFIDMNFFYISLGVGYIVVVMGIAAVLYINP 983

Query: 840  YWRRRWFYLVEVCMTSCYYFV 860
            YWR  WF  ++ C+ +C+ F+
Sbjct: 984  YWRCGWFNFIDYCIDTCFNFL 1004

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 345/804 (42%), Positives = 478/804 (59%), Gaps = 45/804 (5%)

Query: 79  ESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLN 138
           +S+ SL+ LSL  + L++ T  +    E +HL    +  N L+++       + +L+VL+
Sbjct: 175 QSLRSLKTLSLKDTNLSQGTFFNSSTLEELHLDNTSLPINFLQNT-----RALPALKVLS 229

Query: 139 VASNQLTGNFPP-GFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENIS 197
           V    L G  P  G+CEL  L++L +  N+  G+LP CL NL+SL +LDVS NQ T NI 
Sbjct: 230 VGECDLHGTLPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSLTLLDVSENQFTGNIV 289

Query: 198 SSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE--IYAETESHYNSLTPKFQ 255
           S PL +L S+E L LSNN F++P S++P  N S LK F+ E        + +++L PKFQ
Sbjct: 290 SGPLTNLVSLEFLSLSNNLFEVPTSMKPFMNHSSLKFFSSENNRLVTEPAAFDNLIPKFQ 349

Query: 256 LTSISLSGYGDGGT--FPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANN 313
           L  +SL    +      P FLY+Q+DL   DLSH N++G FP+WL +NNT ++ L L++N
Sbjct: 350 LVFLSLLKTTEALNVHIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDN 409

Query: 314 SLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA 373
           S  G+ ++P H    +  LD+SNN     IP +I   LP L  L + +N F G IPS   
Sbjct: 410 SFVGTLQLPDHPYPNMTKLDISNNNMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCLG 469

Query: 374 DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLD 433
           ++  L  LD+S NQL+    E +     +L  L LSNN L G I    FN + L+ L L+
Sbjct: 470 NISSLSVLDLSNNQLSTVKLELLT----TLMFLKLSNNNLGGQIPISVFNSSTLEFLYLN 525

Query: 434 GNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNE 492
           GN F G+I   SL +  +   L LS+N  SG +PRW  +   L+ I +  N+ +GPIP +
Sbjct: 526 GNNFCGQILYLSLYEQKMWFVLDLSNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRD 585

Query: 493 F-CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDL 551
           F C+ D L+ LDLS N++ G +PSC S   I  +HLSKN++ G L    +    LVT+DL
Sbjct: 586 FFCKFDHLEYLDLSENNLSGYIPSCFSPPQITHLHLSKNRLSGPLTYGFYNSSSLVTMDL 645

Query: 552 SYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPC 611
             N    SIPNWI  L  LS +LL  N+ +          +++ ++D+S N LSG +P C
Sbjct: 646 QDNSFTDSIPNWIGNLSSLSVLLLRANHFD----------EQLSILDVSQNQLSGPLPSC 695

Query: 612 LVNTALSEGYYDAVAP--TWDHASAPALSYFPPNGSPM------GK-------EETVQFT 656
           L N    E    A+     +D + +   +Y+   G P+      GK       EE ++FT
Sbjct: 696 LGNLTFKESSQKAILDFVIFDISRSIEKTYYETMGPPLVDSVYLGKGFGLNLIEEVIEFT 755

Query: 657 TKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSN 716
           TK MSY Y+G++L  MSGIDLS N   G IP + G L+ I +LNLSHNNLTG+IP TFSN
Sbjct: 756 TKKMSYGYKGKVLNYMSGIDLSNNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSN 815

Query: 717 LKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGN 776
           LKQIESLDLSYN L+G IPPQL  + TL VF VA+NNLSGK P+R  QF TF+E  YEGN
Sbjct: 816 LKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGN 875

Query: 777 PFLCGLPLSKSCDDNGLTTVTTEAYTENEEG-DSLIDMDSFLITFTVSYGIVIIGIIGVL 835
           PFLCG PL  +C +     V+++    +E+G D  +DM+ F I+F V Y +V++ I  VL
Sbjct: 876 PFLCGPPLRNNCSEEA---VSSQPVPNDEQGDDGFVDMEFFYISFGVCYTVVVMTIAAVL 932

Query: 836 YINPYWRRRWFYLVEVCMTSCYYF 859
           YINPYWRRRW + +E C+ +CYYF
Sbjct: 933 YINPYWRRRWLFFIEDCIDTCYYF 956

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124490|ref|XP_002330036.1| predicted protein [Populus trichocarpa] gi|222871461|gb|EEF08592.1| predicted protein [Populus trichocarpa]

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 370/903 (40%), Positives = 505/903 (55%), Gaps = 52/903 (5%)

Query: 6   NLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFH----EFKNLEHLV 61
           NL+EL L ++  + S +L S++ FS+LK L +        +  + F       +NLE L 
Sbjct: 94  NLKELYLNDNKFNDS-ILTSLSGFSTLKSLYLSNNRFTVTIDLKGFQVLASGLRNLEQL- 151

Query: 62  MDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLR 121
            D    +++ S L  +S   ++L+ L LS +R   +T    GL  L  L+ LY+   D +
Sbjct: 152 -DLSYNKLNDSVLSSLS-GFSTLKFLDLSNNRFTGST----GLNGLRKLETLYLDSTDFK 205

Query: 122 DSLLW-CLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
           +S+L   L  + SL+ L+   ++ T +F  G+CEL  L  L++  N+L+G LP C  NL+
Sbjct: 206 ESILIESLGALPSLKTLHARYSRFT-HFGKGWCELKNLEHLFLSGNNLKGVLPPCFGNLS 264

Query: 181 SLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF---NG 237
           SL++LD+SYNQL  NI+ S + HLT +E L +SNN+FQ+PIS     N S LK F   N 
Sbjct: 265 SLQILDLSYNQLEGNIAFSHISHLTQLEYLSVSNNYFQVPISFGSFMNHSNLKFFECDNN 324

Query: 238 EIYAETESHYNSLTPKFQLTSISLSGYGDG---GTFPKFLYHQHDLNNADLSHLNLSGE- 293
           E+ A     +  L PKF+L   S S          FP FL  Q+DL   DLSH    GE 
Sbjct: 325 ELIAAPS--FQPLVPKFRLRVFSASNCTPKPLEAGFPNFLQSQYDLVFVDLSHNKFVGES 382

Query: 294 FPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPG 353
           FP+WL ENNT L  L L + S  G  ++P H    L T+D+S N   G I   I +  P 
Sbjct: 383 FPSWLFENNTKLNRLYLRDTSFIGPLQLPQHPTPNLQTVDMSGNSIHGQIARNICSIFPR 442

Query: 354 LMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPER-MAMGCFSLEILALSNNT 412
           L +  ++ N+  G IP  F +M  L+ LD+S N ++  + E  +     SL  L LSNN 
Sbjct: 443 LKNFMMANNSLTGCIPPCFGNMSSLEYLDLSNNHMSCELLEHNLPTVGSSLWSLKLSNNN 502

Query: 413 LQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLG-- 470
            +G +    FN+T+L+ L LDGNKF G++  + S         +S+N LSG +PR +G  
Sbjct: 503 FKGRLPLSVFNMTSLEYLFLDGNKFAGQVSGTFSLASSFSWFDISNNLLSGMLPRGIGNS 562

Query: 471 SLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKN 530
           S+   Q I +  N+ EG IP E+     L+ LDLS N++ G+LP       +  VHL  N
Sbjct: 563 SIYRFQAIDLSRNHFEGTIPKEYFNSYWLEFLDLSENNLSGSLPLGFLAPHLRHVHLYGN 622

Query: 531 KIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ 590
           ++ G L +  +    LVTLDL YN L G IPNWI  L +LS +LL +N   GE+PVQLC 
Sbjct: 623 RLTGPLPNAFYNISSLVTLDLGYNNLTGPIPNWIASLSELSILLLKSNQFNGELPVQLCL 682

Query: 591 LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPT----WDHASAPALSYFPPNGSP 646
           L+++ ++DLS NN SG +P CL N   +E Y   +  T     D  S   + +    G  
Sbjct: 683 LRKLSILDLSENNFSGLLPSCLSNLDFTESYEKTLVHTSTESRDDGSRKEI-FASIGGRE 741

Query: 647 MGKEE----------------TVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI 690
           +G E                 +V+ T+K   Y Y G IL  MS +DLSCN+ TGEIPT+ 
Sbjct: 742 LGNEGFYLFDKILWPEISVKISVELTSKKNFYTYEGDILRYMSVMDLSCNRFTGEIPTEW 801

Query: 691 GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750
           G L+ I ALNLS NN  G IP +FSNLKQIESLDLS+N L+G+IP QL+ L  LAVF V+
Sbjct: 802 GNLSGIYALNLSQNNFNGLIPPSFSNLKQIESLDLSHNNLNGRIPAQLVELTFLAVFNVS 861

Query: 751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGD-S 809
           YN LSG+ P+   QF+TF+E SY+GNP LCG PL  SCD    T   +     +  GD  
Sbjct: 862 YNKLSGRTPEMKNQFATFDESSYKGNPLLCGPPLQNSCDK---TESPSARVPNDSNGDGG 918

Query: 810 LIDMDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNL-TLRR 868
            IDM SF  +F V Y IV++ I  VL INP WRRRWFY +E CM +CY F+A N   L R
Sbjct: 919 FIDMYSFYASFGVCYIIVVLTIAAVLCINPDWRRRWFYFIEECMDTCYCFLAINFPKLSR 978

Query: 869 FYR 871
           F R
Sbjct: 979 FRR 981

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 348/862 (40%), Positives = 506/862 (58%), Gaps = 24/862 (2%)

Query: 23   LQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMA 82
            L+S+ + +SLK L++    L G+   ++    +NLE  V+D    ++++  L     S++
Sbjct: 162  LKSLGTITSLKTLAICSMGLNGSFSIRELASLRNLE--VLDLSYNDLESFQLLQDFASLS 219

Query: 83   SLRILSLSYSRLNKNTILDQGLCELVH-LQELYIRDNDLRDSLLWCLANMTSLQVLNVAS 141
            +L +L LSY+  + +      L   ++ L+ L +  N     +   +  ++SL+ L++A 
Sbjct: 220  NLELLDLSYNLFSGSIPSSIRLMSSINNLEVLDLSGNSFSGIVPSSIRLLSSLKSLSLAG 279

Query: 142  NQLTGNFP-PGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSP 200
            N L G+    GFC+L  L+EL +  N  +G LP CL NLTSLR+LD+S N  + N+SS  
Sbjct: 280  NHLNGSLANQGFCQLNKLQELDLSYNLFQGILPPCLNNLTSLRLLDLSVNLFSGNLSSPL 339

Query: 201  LMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF-----NGEIYAETESHYNSLTPKFQ 255
            L +LTS+E + LS N F+   S     N SKL+       N +   ETE +     P FQ
Sbjct: 340  LPNLTSLEYIDLSYNQFEGSFSFSSFANHSKLQMVKLGMNNNKFEVETE-YPIGWVPLFQ 398

Query: 256  LTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL 315
            L ++SL      G  P FL +Q  L   DLSH NL+G FPNWL ENNT LK+L+L NNSL
Sbjct: 399  LKALSLDSCKLTGDLPSFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLKSLVLRNNSL 458

Query: 316  FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADM 375
             G   +P+    ++ +LD+S+N   G +   +   +P + +LNLS N F G +PSS  ++
Sbjct: 459  MGQL-LPLERNTRIHSLDISHNQLDGQLQENVAHMIPNMKYLNLSDNGFEGILPSSIVEL 517

Query: 376  KMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGN 435
            + L  LD+S N  +G +P+++ +    L +L LSNN   G IFS  FNL  L+ L L  N
Sbjct: 518  RALWYLDLSTNNFSGEVPKQL-LAAKDLGVLKLSNNKFHGEIFSRDFNLIRLEVLYLGNN 576

Query: 436  KFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQ 495
            +  G +   +SK   LG L +S+N++SG+IP  +G++  L  +++ NN+ +G +P E  Q
Sbjct: 577  QLTGTLSNVISKSSWLGVLDVSNNYMSGEIPSQIGNMTYLTTLVLGNNSFKGKLPPEISQ 636

Query: 496  LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNR 555
            L  L+ LD+S N++ G+LP   ++ S++ +HL  N   G +        +L+TLD+  NR
Sbjct: 637  LWGLEFLDVSQNALSGSLPCLKTMESLKHLHLQGNMFTGLIPRDFLNSSHLLTLDMRDNR 696

Query: 556  LHGSIPNWIDKL-PQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
            L GSIPN I  L  QL   LL  N + G IP  LC L E+ L+DLS+N+ SG IP C  +
Sbjct: 697  LFGSIPNSISALLKQLRIFLLGGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPKCFGH 756

Query: 615  TALSE--------GYYDAVAPTWDHASAPA---LSYFPPNGSPMGKEETVQFTTKNMSYY 663
                E        G +  +    D     A   + Y+    S    ++ V+F TKN   +
Sbjct: 757  IRFGEMKKEDNVFGQFIEIRYGMDSHLVYAGYLVKYWEDLSSVYKGKDEVEFVTKNRRDF 816

Query: 664  YRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESL 723
            YRG IL  MSG+DLSCN LTGEIP ++G L+ IRALNLSHN L G+IP +FS+L QIESL
Sbjct: 817  YRGGILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSDLSQIESL 876

Query: 724  DLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783
            DLSYN L G+IP +L+ LN LAVF VAYNN+SG++P+  AQF+TF+E SYEGNPFLCG  
Sbjct: 877  DLSYNKLGGEIPLELVELNFLAVFSVAYNNISGRVPNAKAQFATFDESSYEGNPFLCGEL 936

Query: 784  LSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVLYINPYWRR 843
            L + C+ +  +        E+E     I+   F  +FT SY ++++G + +LYINPYWR 
Sbjct: 937  LKRKCNTSIESPCAPSQSFESETKWYDINHVVFFASFTTSYIMILLGFVTILYINPYWRH 996

Query: 844  RWFYLVEVCMTSCYYFVADNLT 865
            RWF  +E C+ SCYYFV D+L+
Sbjct: 997  RWFNFIEECVYSCYYFVFDSLS 1018

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	874
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.815	0.658	0.417	2.8e-128
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.950	0.831	0.370	2.1e-125
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.914	0.896	0.368	1.2e-120
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.842	0.754	0.4	3.2e-120
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.914	0.879	0.352	1.5e-106
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.848	0.793	0.358	9.8e-103
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.832	0.754	0.324	3.1e-90
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.824	0.575	0.304	1.6e-76
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.735	0.566	0.297	6e-66
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.765	0.535	0.301	2.1e-64

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
 Identities = 312/748 (41%), Positives = 409/748 (54%)

Query:   132 TSLQVLNVASNQL--TGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSY 189
             TSLQVL+   NQL  T     G C L+ LREL + +N L  SLP CL NLT LR LD+S 
Sbjct:   332 TSLQVLDFKRNQLSLTHEGYLGICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSN 390

Query:   190 NQLTENISSSPLMHLTSI-EELILSNNHFQIPISLEPLFNLSKLKTFN-----GEIYAET 243
             NQL  N+SS  +  L S+ E L L +N+F        L N ++L  F      G I  +T
Sbjct:   391 NQLNGNLSSF-VSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQT 449

Query:   244 ESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNT 303
             ES   S  P FQL  + LS    G T   FL HQ DL   DLSH  L+G FP WL +NNT
Sbjct:   450 ES---SWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNT 506

Query:   304 DLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNA 363
              L+T+LL+ NSL    ++PI  +  L  LD+S+N     I  +IG   P L  +N S N 
Sbjct:   507 RLQTILLSGNSLT-KLQLPI-LVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNH 564

Query:   364 FNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFN 423
             F G+IPSS  +MK L+ LD+S N L G +P     GC+SL +L LSNN LQG IFS+  N
Sbjct:   565 FQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHAN 624

Query:   424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNN 483
             LT L  L LDGN F G + E L K   L  L +SDN  SG +P W+G +  L  + M  N
Sbjct:   625 LTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGN 684

Query:   484 NLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYY 543
              L+GP P    Q   ++V+D+S+NS  G++P  ++  S+ ++ L  N+  G +   +   
Sbjct:   685 QLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKA 743

Query:   544 PYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNN 603
               L  LDL  N   G I N ID+  +L  +LL NN  +  IP ++CQL EV L+DLSHN 
Sbjct:   744 AGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQ 803

Query:   604 LSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFP--PNGSPMGKEE---------- 651
               G IP C    +      D             +++ P    GS +  ++          
Sbjct:   804 FRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKP 863

Query:   652 --TVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT 709
                V F TK+    Y+G IL  M G+DLS N+L+GEIP +IG L  IR+LNLS N LTG+
Sbjct:   864 ATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGS 923

Query:   710 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFE 769
             IP + S LK +ESLDLS N L G IPP L  LN+L    ++YNNLSG+IP +     TF+
Sbjct:   924 IPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFK-GHLVTFD 982

Query:   770 EDSYEGNPFLCGLPLSKSCDDNGLT---TVTTEAYTE-NEEGDSLIDMDSFLITFTVSYX 825
             E SY GN  LCGLP +K+C    +    +V+T A  E NEE  ++IDM  F  T    Y 
Sbjct:   983 ERSYIGNAHLCGLPTNKNCISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYI 1042

Query:   826 XXXXXXXXXLYINPYWRRRWFYLVEVCM 853
                      LYI+  W R WFY V++C+
Sbjct:  1043 STSLALFAFLYIDSRWSREWFYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
 Identities = 327/882 (37%), Positives = 474/882 (53%)

Query:     1 LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
             L+  T+L  L L  +++H   L++     ++L++L +RG    G++  QD++  +    L
Sbjct:    92 LNAATSLTTLFLTYNNMHSPFLVKEFKDLTNLEHLDLRGNRFNGSIPTQDYNSLRRFRKL 151

Query:    61 VMDRMLVEVDTSFLQIVSESMAXXXXXXXXXXXXNK--NTILDQGLCELVHLQELYIRDN 118
                 +L   D  F   +   +             N        + L +L +++ L +  N
Sbjct:   152 ---EILDLSDNLFNSRIFPFLNSATSLKSLSLWGNNMGGPFPAKELRDLTNVELLDLSRN 208

Query:   119 DLRDSL-LWCLANMTSLQVLNVASNQ------LTGNFP---P--GFCELVLLRELYIDNN 166
                 S+ +  L  +  L+ L+++ N+      L G F    P  G C    + EL + NN
Sbjct:   209 RFNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNN 268

Query:   167 DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPL 226
              L G  PLCL +LT LRVLD+S NQLT N+ S+ L +L S+E L L  N+F+   SL  L
Sbjct:   269 KLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LANLESLEYLSLFGNNFEGFFSLGLL 327

Query:   227 FNLSKLKTFNGEIYAET-ESHYN-SLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNAD 284
              NLSKLK    +  + + E  +  S  PKFQL  I+L    +    P FL HQ DL++ D
Sbjct:   328 ANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSC-NLEKVPHFLLHQKDLHHVD 386

Query:   285 LSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIP 344
             LS   + G FP+WL ENNT L+ LLL NNS F SF++P      L  L+VS N F  H+ 
Sbjct:   387 LSDNQIHGNFPSWLLENNTKLEVLLLQNNS-FTSFQLP-KSAHNLLFLNVSVNKF-NHLF 443

Query:   345 VE-IGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL 403
             ++  G  LP L+ +NL+ N F G++PSS  +MK ++ LD+S+N+  G +P R   GC++L
Sbjct:   444 LQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNL 503

Query:   404 EILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 463
              IL LS+N L G +F E  N T L  + +D N F G I +       L  L +S+N L+G
Sbjct:   504 TILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTG 563

Query:   464 KIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLP---SCLSLG 520
              IP W+G    L  + + NN LEG IP     +  L++LDLS+N + G +P   S +  G
Sbjct:   564 VIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHG 623

Query:   521 SIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI 580
             ++  + L  N + G +   +     ++ LDL  NRL G++P +I+    +S +LL  N  
Sbjct:   624 AV--LLLQNNNLSGVIPDTLLLN--VIVLDLRNNRLSGNLPEFINT-QNISILLLRGNNF 678

Query:   581 EGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTA--LSEG---Y-YDAVAPTWDHASA 634
              G+IP Q C L  ++L+DLS+N  +G IP CL NT+  L +G   Y YD V   +  A  
Sbjct:   679 TGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYD-VPSRFGTAKD 737

Query:   635 PAL--SYFPPNGSPMGKE---ET-VQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPT 688
             P    S    +   M  E   +T ++F TK+    Y G  L  + G+DLS N+L+GEIP 
Sbjct:   738 PVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPV 797

Query:   689 QIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFR 748
             ++G L  + ALNLSHNNL+G I  +FS LK +ESLDLS+N L G IP QL  + +LAVF 
Sbjct:   798 ELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFN 857

Query:   749 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGD 808
             V+YNNLSG +P    QF+TFE  SY GNP LCG  +  SC  N      T+   E +E  
Sbjct:   858 VSYNNLSGIVPQG-RQFNTFETQSYFGNPLLCGKSIDISCASNNFHP--TDNGVEADE-- 912

Query:   809 SLIDMDSFLITFTVSYXXXXXXXXXXLYINPYWRRRWFYLVE 850
             S +DM+SF  +F  +Y          L  +  W R WFY+V+
Sbjct:   913 STVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
 Identities = 314/853 (36%), Positives = 457/853 (53%)

Query:    29 FSSLKYLSMRGCVLKGALH----GQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMAXX 84
             F  L+ L++     KG       G+     +NLE L  D  +   DTS L  ++E+++  
Sbjct:    49 FEELQSLNLSSGYFKGWFDERKGGKGLGSLRNLETL--DLGVNFYDTSVLPYLNEAVSLK 106

Query:    85 XXXXXXXXXXNKNTILDQGLCELVHLQELYIRDNDLRDSL-LWCLANMTSLQVLNVASNQ 143
                        K     Q L  L  L+ L ++ N     L    L N+ +L+ L++++N+
Sbjct:   107 TLILHDNLF--KGGFPVQELINLTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNK 164

Query:   144 LTGNFPP-GFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLM 202
              +G+    G C L  L+EL +  N   G +PLC +  + LRVLD+S N L+  I    + 
Sbjct:   165 FSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF-IS 223

Query:   203 HLTSIEELILSNNHFQIPISLEPLFNLSKLKTF-----NGEIYAETESHYNSLTPKFQLT 257
                S+E L L +N F+   SL  +  L++LK F     +G +     +    L  + QL+
Sbjct:   224 DFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGL--QSQLS 281

Query:   258 SISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFG 317
             SI LS + + G  P FL++Q +L   DLS+  LSG FP WL ENNT+L+ LLL NNS F 
Sbjct:   282 SIMLS-HCNLGKIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNS-FK 339

Query:   318 SFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKM 377
             +  +P   +++L  LD+S N F   +P ++G  L  L HLNLS N F G++PSS A M+ 
Sbjct:   340 TLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMEN 398

Query:   378 LKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKF 437
             ++ +D+SYN  +G +P  +  GC+SL  L LS+N   G I  +  + T+L  L +D N F
Sbjct:   399 IEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMF 458

Query:   438 IGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLD 497
              G+IP +L    +L  + LS+N L+G IPRWLG+   L+ + + NN L+G IP     + 
Sbjct:   459 TGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIP 517

Query:   498 CLKVLDLSNNSIFGTLP--SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNR 555
              L +LDLS N + G+LP  S    G I  +H   N + G +   + Y   L  LDL  N+
Sbjct:   518 YLWLLDLSGNFLSGSLPLRSSSDYGYILDLH--NNNLTGSIPDTLWYG--LRLLDLRNNK 573

Query:   556 LHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNT 615
             L G+IP +    P +S +LL  N + G+IPV+LC L  VR++D +HN L+  IP C+ N 
Sbjct:   574 LSGNIPLF-RSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNL 632

Query:   616 ALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEET-----------------VQFTTK 658
             +   G +      W  AS   LS F    + +  E                   V+F  K
Sbjct:   633 SFGSGGHSNADSDWYPASL--LSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVK 690

Query:   659 NM-SYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNL 717
                  Y RG  L  M G+DLS N+L+G IP ++G L R+R+LNLS N+L+G+IP +FSNL
Sbjct:   691 QRYDLYMRGT-LNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNL 749

Query:   718 KQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNP 777
             + IESLDLS+N LHG IP QL +L +L VF V+YNNLSG IP    QF+TF E SY GN 
Sbjct:   750 RSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQG-KQFNTFGEKSYLGNF 808

Query:   778 FLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYXXXXXXXXXXLYI 837
              LCG P  +SC   G TT+++    E+++   L+D+     +   +Y          L  
Sbjct:   809 LLCGSPTKRSC---GGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCF 865

Query:   838 NPYWRRRWFYLVE 850
             +  WRR WF LV+
Sbjct:   866 DSPWRRAWFCLVD 878

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 312/780 (40%), Positives = 423/780 (54%)

Query:   106 ELVHLQELYIRDNDLRD--SL--LWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRE 160
             E  HL++L   D    D  SL  L  L  +T+L+VL +A N L G  P   FCE+  LR+
Sbjct:   205 EFTHLEKLKALDLSANDFSSLVELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQ 264

Query:   161 LYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIP 220
             L +  N   G LP+CL NL  LRVLD+S NQL+ N+ +S    L S+E L LS+N+F+  
Sbjct:   265 LDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGF 323

Query:   221 ISLEPLFNLSKLKTFN----GE-IYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLY 275
              SL PL NL+KLK F      E +  ETES++    PKFQLT  +L  +   G  P FL 
Sbjct:   324 FSLNPLANLTKLKVFRLSSTSEMLQVETESNW---LPKFQLTVAALP-FCSLGKIPNFLV 379

Query:   276 HQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVS 335
             +Q +L   DLS   LSG+ P WL ENN +LK L L NNS F  F++P   + KL  LD S
Sbjct:   380 YQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNS-FTIFQIPT-IVHKLQVLDFS 437

Query:   336 NNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPER 395
              N   G +P  IG  LP L+H+N S N F G++PSS  +M  +  LD+SYN  +G +P  
Sbjct:   438 ANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRS 497

Query:   396 MAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLY 455
             +  GCFSL  L LS+N+  G I   +  LT+L  L++  N F GEI   L     L    
Sbjct:   498 LLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFD 557

Query:   456 LSDNHLSGKIPRWL---GSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT 512
              S+N L+G I   +    S L +  +++ NN LEG +P     +  L  LDLS N + G 
Sbjct:   558 ASNNRLTGLISSSIPPDSSHLIM--LLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGD 615

Query:   513 LPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQL 570
             LPS +  S+  I+ + L  N   G L   +    Y+  LDL  N+L GSIP +++    +
Sbjct:   616 LPSSVVNSMYGIK-IFLHNNSFTGPLPVTLLENAYI--LDLRNNKLSGSIPQFVNTGKMI 672

Query:   571 SYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCL--VNTALSEGY----YDA 624
             + +L  NN + G IP +LC L  +RL+DLS N L+G IPPCL  ++T L EG     +  
Sbjct:   673 TLLLRGNN-LTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQ 731

Query:   625 VAPTWDHASAPAL-SYFPPNGSPMGKEET-----VQFTTKNMSYYYRGRILTSMSGIDLS 678
                  D        S F  +   +  + T     ++F  K     + G  L  M G+DLS
Sbjct:   732 EISFGDSLQMEFYRSTFLVDEFMLYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLS 791

Query:   679 CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL 738
              N+L+G IP ++G L+++RALNLS N L+ +IP  FS LK IESLDLSYN+L G IP QL
Sbjct:   792 SNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQL 851

Query:   739 IVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTT 798
               L +LAVF V++NNLSG IP    QF+TF ++SY GNP LCG P  +SC+    T    
Sbjct:   852 TNLTSLAVFNVSFNNLSGIIPQG-GQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEAD 910

Query:   799 EAYTENEEGD---SLIDMDSFLITFTVSYXXXXXXXXXXLYINPYWRRRWFYLVEVCMTS 855
                 E EE D   + IDM     T   +Y          +  +  WRR W  +V+  + S
Sbjct:   911 NGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
 Identities = 305/865 (35%), Positives = 431/865 (49%)

Query:    17 LHVSQL-LQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQ 75
             L +S L L  +  F  ++ L +    L G +   D   +K+L  L   ++L      F  
Sbjct:    78 LEISLLNLSLLHPFEEVRSLDLSNSRLNGLV--DDVEGYKSLRRLRNLQILNFSSNEFNN 135

Query:    76 IVSESMAXXXXXXXXXXXXNK--NTILDQGLCELVHLQELYIRDNDLRDSL-LWCLANMT 132
              +   +             N     I  + L  L +L+ L +  N +  S+ +     + 
Sbjct:   136 SIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELLDLSGNRIDGSMPVREFPYLK 195

Query:   133 SLQVLNVASNQLTGNFP-PGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
              L+ L+++SN +  +     FCE+  L+EL +   +  G LPLC  NL  LR LD+S NQ
Sbjct:   196 KLKALDLSSNGIYSSMEWQVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQ 255

Query:   192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHY---- 247
             LT NI  S    L S+E L LS+N F+   SL PL NL+KLK F   I++  +       
Sbjct:   256 LTGNIPPS-FSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVF---IFSSKDDMVQVKI 311

Query:   248 -NSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLK 306
              ++  P FQL+ + L         P FL +Q +L+  DLS   +SG  P WL ENN +L+
Sbjct:   312 ESTWQPLFQLSVLVLR-LCSLEKIPNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELE 370

Query:   307 TLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG 366
              L L NNS F  F+MP   +  L  LD S N   G  P   G  LP L+H+N S N F G
Sbjct:   371 VLQLKNNS-FTIFQMPTS-VHNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQG 428

Query:   367 SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTN 426
             + PSS  +M  +  LD+SYN L+G +P+     CFSL IL LS+N   GH    + N T+
Sbjct:   429 NFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTS 488

Query:   427 LKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE 486
             L  L+++ N F G+I         +G L L D              L + D  M NN LE
Sbjct:   489 LIVLRINNNLFTGKIG--------VGLLTLVD--------------LCILD--MSNNFLE 524

Query:   487 GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYL 546
             G +P      + L  LDLS N + G LPS +SL ++  +H   N   G +     +   +
Sbjct:   525 GELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNVLFLH--NNNFTGPIPDT--FLGSI 580

Query:   547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606
               LDL  N+L G+IP ++D    +S++LL  N + G IP  LC+  ++RL+DLS N L+G
Sbjct:   581 QILDLRNNKLSGNIPQFVDT-QDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNG 639

Query:   607 HIPPCLVNTALS-------EGYYDAVAPTWDHASAPALSYFPPN---GSPMGKEETVQFT 656
              IP C  N +           YY AVA    +      ++   N         E  V+F 
Sbjct:   640 FIPSCFNNLSFGLARKEEITNYYVAVALESFYLGFYKSTFVVENFRLDYSNYFEIDVKFA 699

Query:   657 TKNMSYYYRGRI------LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI 710
             TK     Y G        L SM G+DLS N+L+G IP ++G L ++RALNLSHN L+  I
Sbjct:   700 TKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHI 759

Query:   711 PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEE 770
             P +FS L+ IESLDLSYN+L G IP QL  L +LA+F V+YNNLSG IP    QF+TF+E
Sbjct:   760 PDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQG-KQFNTFDE 818

Query:   771 DSYEGNPFLCGLPLSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYXXXXXX 830
             +SY GNP LCG P   SC+    +        E+++ +  IDM  F  +   +Y      
Sbjct:   819 NSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDK-EVAIDMLVFYWSTAGTYVTALIG 877

Query:   831 XXXXLYINPYWRRRWFYLVEVCMTS 855
                 + ++  WRR W  LV+  + S
Sbjct:   878 ILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
 Identities = 278/775 (35%), Positives = 391/775 (50%)

Query:   102 QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFP-PGFCELVLLRE 160
             +GL +L +L+ L +R N L  S+   L ++  L+ L+++SN+ + +        L+ L  
Sbjct:   167 KGLKDLTNLELLDLRANKLNGSMQE-LIHLKKLKALDLSSNKFSSSMELQELQNLINLEV 225

Query:   161 LYIDNNDLRGSLPL-CLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ- 218
             L +  N + G +P+     L +LR LD+  N     I    L  L  +  L LS+N    
Sbjct:   226 LGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLC-LGSLKKLRVLDLSSNQLSG 284

Query:   219 -IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ 277
              +P S   L +L  L   +     +     N LT    L  + +  +      P FL +Q
Sbjct:   285 DLPSSFSSLESLEYLSLSDNNF--DGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQ 342

Query:   278 HDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNN 337
               L   DLS  NLSG  P WL  NN +L+ L L NNS F  F +P   +  L   D S N
Sbjct:   343 KKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNS-FTIFPIPT-MVHNLQIFDFSAN 400

Query:   338 FFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMA 397
               +G  P ++   LP L+ LN S N F G  P+S  +MK +  LD+SYN  +G +P    
Sbjct:   401 N-IGKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFV 459

Query:   398 MGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLS 457
              GC S+  L LS+N   G     + N  +L  L++D N F G I   LS   +L  L +S
Sbjct:   460 TGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMS 519

Query:   458 DNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL 517
             +N LSG IPRWL     L  +++ NN LEG IP     +  L  LDLS N   G LPS +
Sbjct:   520 NNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHV 579

Query:   518 SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN 577
                    + L  N   G +   +     +  LDL  N+L GSIP + D    ++ +LL  
Sbjct:   580 DSELGIYMFLHNNNFTGPIPDTL--LKSVQILDLRNNKLSGSIPQF-DDTQSINILLLKG 636

Query:   578 NYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVA----PTWDHAS 633
             N + G IP +LC L  VRL+DLS N L+G IP CL N +      DA+A    P++   S
Sbjct:   637 NNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALNIPPSFLQTS 696

Query:   634 APALSY---FPPNGSPMGK---EET-VQFTTKNMSYYYRGR------ILTSMSGIDLSCN 680
                  Y   F  +   + +   +ET ++F  K     Y GR      IL  M G+DLS N
Sbjct:   697 LEMELYKSTFLVDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNN 756

Query:   681 KLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV 740
             +L+G IPT++G L ++R LNLSHN+L G+IP++FS L  +ESLDLS+N+L G IP  L  
Sbjct:   757 ELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSS 816

Query:   741 LNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTVTTEA 800
             L +LAVF V+ NNLSG IP    QF+TFEE+SY GNP LCG P S+SC+ N  +    + 
Sbjct:   817 LTSLAVFDVSSNNLSGIIPQG-RQFNTFEEESYLGNPLLCGPPTSRSCETNK-SPEEADN 874

Query:   801 YTENEEGDSLIDMDSFLITFTVSYXXXXXXXXXXLYINPYWRRRWFYLVEVCMTS 855
               E E+  + IDM  F  +    Y          +  +  WRR W  +V+  + S
Sbjct:   875 GQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 251/774 (32%), Positives = 390/774 (50%)

Query:    23 LQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMA 82
             L  +  F  ++ L++      G     D   +K+L  L    +L      F   +   ++
Sbjct:    96 LSLLHPFEDVRSLNLSSSRCSGLF--DDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLS 153

Query:    83 XXXXXXXXXXXXNK--NTILDQGLCELVHLQELYIRDNDLRDSL-LWCLANMTSLQVLNV 139
                         N    +   + L +L +L+ L +  N    S+ +  L+++  L+ L++
Sbjct:   154 AATSLTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRNRFNGSIPIQELSSLRKLKALDL 213

Query:   140 ASNQLTGNFP--------------PGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVL 185
             + N+ +G+                 G CEL  ++EL +  N L G LP CL +LT LRVL
Sbjct:   214 SGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVL 273

Query:   186 DVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETES 245
             D+S N+LT  + SS L  L S+E L L +N F+   S   L NLS L     ++ +++ S
Sbjct:   274 DLSSNKLTGTVPSS-LGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVL--KLCSKSSS 330

Query:   246 ----HYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPEN 301
                   +S  PKFQL+ I+L    +    P FL HQ DL + DLS  N+SG+ P+WL  N
Sbjct:   331 LQVLSESSWKPKFQLSVIALRSC-NMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLAN 389

Query:   302 NTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSR 361
             NT LK LLL NN LF SF++P      L  LDVS N F    P  IG   P L +LN S+
Sbjct:   390 NTKLKVLLLQNN-LFTSFQIP-KSAHNLLFLDVSANDFNHLFPENIGWIFPHLRYLNTSK 447

Query:   362 NAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK 421
             N F  ++PSS  +M  ++ +D+S N   G +P     GC+S+ IL LS+N L G IF E 
Sbjct:   448 NNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPES 507

Query:   422 FNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMP 481
              N TN+  L +D N F G+I + L     L  L +S+N+L+G IP W+G L +L  +++ 
Sbjct:   508 TNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLIS 567

Query:   482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH 541
             +N L+G IP        L++LDLS NS+ G +P      +   + L  NK+ G +   + 
Sbjct:   568 DNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTL- 626

Query:   542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSH 601
                 +  LDL  NR  G IP +I+ +  +S +LL  N   G+IP QLC L  ++L+DLS+
Sbjct:   627 -LANVEILDLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSN 684

Query:   602 NNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMS 661
             N L+G IP CL NT+   G  +  +  +D   +     F  NG  + ++ +   + KN  
Sbjct:   685 NRLNGTIPSCLSNTSFGFGK-ECTSYDYDFGISFPSDVF--NGFSLHQDFS---SNKNGG 738

Query:   662 YYYRGRILTSMSGIDLSCNKLTG-EIPTQIGY-------LTRIRALNLSHNNLTGTIPTT 713
              Y++  +      +D      T  E  T+  Y       L  +  ++LS N L+G IP  
Sbjct:   739 IYFKSLLTLDPLSMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVE 798

Query:   714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFST 767
             F  L ++ +L+LS+N L G IP  +  +  +  F +++N L G+IP ++ + ++
Sbjct:   799 FGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTS 852

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 778 (278.9 bits), Expect = 1.6e-76, P = 1.6e-76
 Identities = 232/763 (30%), Positives = 367/763 (48%)

Query:    35 LSMRGCVLKGALHGQDFHEFKNLEHLVM--DRMLVEVDTSFLQIVSESMAXXXXXXXXXX 92
             L++ G  L G++       F NL H+ +  +R++  + T+ L  +S S+           
Sbjct:    76 LNLSGLGLTGSI-SPSIGRFNNLIHIDLSSNRLVGPIPTT-LSNLSSSLESLHLFSNLLS 133

Query:    93 XXNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGF 152
                   I  Q L  LV+L+ L + DN+L  ++     N+ +LQ+L +AS +LTG  P  F
Sbjct:   134 ----GDIPSQ-LGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRF 188

Query:   153 CELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELIL 212
               LV L+ L + +N+L G +P  + N TSL +   ++N+L  ++ +  L  L +++ L L
Sbjct:   189 GRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNL 247

Query:   213 SNNHF--QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTF 270
              +N F  +IP  L  L ++  L     ++          LT    L ++ LS     G  
Sbjct:   248 GDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKR---LTELANLQTLDLSSNNLTGVI 304

Query:   271 PKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLA 330
              +  +  + L    L+   LSG  P  +  NNT LK L L+   L G     I   Q L 
Sbjct:   305 HEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLK 364

Query:   331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 390
              LD+SNN   G IP  +   L  L +L L+ N+  G++ SS +++  L+   + +N L G
Sbjct:   365 LLDLSNNTLTGQIPDSL-FQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEG 423

Query:   391 AIPERMA-MGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCY 449
              +P+ +  +G   LEI+ L  N   G +  E  N T L+ +   GN+  GEIP S+ +  
Sbjct:   424 KVPKEIGFLG--KLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLK 481

Query:   450 LLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI 509
              L  L+L +N L G IP  LG+   +  I + +N L G IP+ F  L  L++  + NNS+
Sbjct:   482 DLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSL 541

Query:   510 FGTLP-SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLP 568
              G LP S ++L ++ +++ S NK  G +  +     YL + D++ N   G IP  + K  
Sbjct:   542 QGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYL-SFDVTENGFEGDIPLELGKST 600

Query:   569 QLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP----C--LVNTALSEGYY 622
              L  + L  N   G IP    ++ E+ L+D+S N+LSG IP     C  L +  L+  Y 
Sbjct:   601 NLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYL 660

Query:   623 DAVAPTWDHASAPALSYFPPNGSP-MGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNK 681
               V PTW     P L     + +  +G   T  F+  N        ILT    + L  N 
Sbjct:   661 SGVIPTW-LGKLPLLGELKLSSNKFVGSLPTEIFSLTN--------ILT----LFLDGNS 707

Query:   682 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL 741
             L G IP +IG L  + ALNL  N L+G +P+T   L ++  L LS N L G+IP ++  L
Sbjct:   708 LNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQL 767

Query:   742 NTL-AVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783
               L +   ++YNN +G+IP  ++     E      N  +  +P
Sbjct:   768 QDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVP 810

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 6.0e-66, Sum P(2) = 6.0e-66
 Identities = 201/675 (29%), Positives = 315/675 (46%)

Query:   128 LANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDV 187
             ++ +  L+ L++ SN   G  P        L  +++  N L G LP  + NLTSL V +V
Sbjct:    88 ISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNV 147

Query:   188 SYNQLTENISSSPLMHLTSIEELILSNNHF--QIPISLEPLFNLSKLKTFNGEIYAETES 245
             + N+L+  I   P+   +S++ L +S+N F  QIP  L  L  L  L     ++  E  +
Sbjct:   148 AGNRLSGEI---PVGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPA 204

Query:   246 HYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFP---NWLPENN 302
                +L    Q   +  +     GT P  + +   L +   S   + G  P     LP+  
Sbjct:   205 SLGNLQ-SLQYLWLDFNLLQ--GTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPK-- 259

Query:   303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHI-PVEIGTYLPGLMHLNLSR 361
               L+ L L+NN+  G+    + C   L  + +  N F   + P        GL  L+L  
Sbjct:   260 --LEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQE 317

Query:   362 NAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK 421
             N  +G  P    ++  LK+LD+S N  +G IP  +      LE L L+NN+L G I  E 
Sbjct:   318 NRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIG-NLKRLEELKLANNSLTGEIPVEI 376

Query:   422 FNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMP 481
                 +L  L  +GN   G+IPE L     L  L L  N  SG +P  + +L  L+ + + 
Sbjct:   377 KQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLG 436

Query:   482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESII 540
              NNL G  P E   L  L  LDLS N   G +P  +S L ++  ++LS N   G++ + +
Sbjct:   437 ENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASV 496

Query:   541 HYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLS 600
                  L  LDLS   + G +P  +  LP +  I L  N   G +P     L  +R ++LS
Sbjct:   497 GNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLS 556

Query:   601 HNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNM 660
              N+ SG IP       L      +++ + +H S       PP        E ++  +  +
Sbjct:   557 SNSFSGEIPQTFGFLRLLV----SLSLSDNHISGS----IPPEIGNCSALEVLELRSNRL 608

Query:   661 SYYYRGRI--LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLK 718
               +    +  L  +  +DL  N L+GEIP +I   + + +L+L HN+L+G IP +FS L 
Sbjct:   609 MGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLS 668

Query:   719 QIESLDLSYNLLHGKIPPQLIVLNT-LAVFRVAYNNLSGKIPDRVAQFSTFEEDS-YEGN 776
              +  +DLS N L G+IP  L ++++ L  F V+ NNL G+IP  +   S     S + GN
Sbjct:   669 NLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLG--SRINNTSEFSGN 726

Query:   777 PFLCGLPLSKSCDDN 791
               LCG PL++ C+ +
Sbjct:   727 TELCGKPLNRRCESS 741

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 651 (234.2 bits), Expect = 2.1e-64, Sum P(2) = 2.1e-64
 Identities = 218/722 (30%), Positives = 343/722 (47%)

Query:   100 LDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLR 159
             + + L  LV+LQ L +    L   +   L  +  +Q L +  N L G  P        L 
Sbjct:   159 IPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLT 218

Query:   160 ELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ- 218
                   N L G++P  L  L +L +L+++ N LT  I S  L  ++ ++ L L  N  Q 
Sbjct:   219 VFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQ-LGEMSQLQYLSLMANQLQG 277

Query:   219 -IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ 277
              IP SL  L NL  L      +  E    + +++   QL  + L+     G+ PK +   
Sbjct:   278 LIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMS---QLLDLVLANNHLSGSLPKSICSN 334

Query:   278 H-DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSN 336
             + +L    LS   LSGE P  L +  + LK L L+NNSL GS    +  L +L  L + N
Sbjct:   335 NTNLEQLVLSGTQLSGEIPVELSKCQS-LKQLDLSNNSLAGSIPEALFELVELTDLYLHN 393

Query:   337 NFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERM 396
             N   G +   I   L  L  L L  N   G +P   + ++ L+ L +  N+ +G IP+ +
Sbjct:   394 NTLEGTLSPSISN-LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEI 452

Query:   397 AMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYL 456
                C SL+++ +  N  +G I      L  L  L L  N+ +G +P SL  C+ L  L L
Sbjct:   453 G-NCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDL 511

Query:   457 SDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL-PS 515
             +DN LSG IP   G L  L+ +++ NN+L+G +P+    L  L  ++LS+N + GT+ P 
Sbjct:   512 ADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPL 571

Query:   516 CLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL 575
             C S  S     ++ N  E ++   +     L  L L  N+L G IP  + K+ +LS + +
Sbjct:   572 CGS-SSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDM 630

Query:   576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTA------LSEGYYDAVAPTW 629
             ++N + G IP+QL   K++  IDL++N LSG IPP L   +      LS   +    PT 
Sbjct:   631 SSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPT- 689

Query:   630 DHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQ 689
             +  +   L     +G+ +      +           G  L +++ ++L  N+ +G +P  
Sbjct:   690 ELFNCTKLLVLSLDGNSLNGSIPQEI----------GN-LGALNVLNLDKNQFSGSLPQA 738

Query:   690 IGYLTRIRALNLSHNNLTGTIPTTFSNLKQIES-LDLSYNLLHGKIPPQLIVLNTLAVFR 748
             +G L+++  L LS N+LTG IP     L+ ++S LDLSYN   G IP  +  L+ L    
Sbjct:   739 MGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLD 798

Query:   749 VAYNNLSGKIPDRVA---------------------QFSTFEEDSYEGNPFLCGLPLSKS 787
             +++N L+G++P  V                      QFS +  DS+ GN  LCG PLS+ 
Sbjct:   799 LSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQFSRWPADSFLGNTGLCGSPLSR- 857

Query:   788 CD 789
             C+
Sbjct:   858 CN 859

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	874
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-58
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-58
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-32
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  220 bits (562), Expect = 7e-60
 Identities = 160/506 (31%), Positives = 246/506 (48%), Gaps = 32/506 (6%)

Query: 285 LSHLNLSGEFPNW---LPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLG 341
           LS+ N S +   W      N++ + ++ L+  ++ G     I  L  + T+++SNN   G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 342 HIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF 401
            IP +I T    L +LNLS N F GSIP        L++LD+S N L+G IP  +  G F
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDI--GSF 163

Query: 402 S-LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 460
           S L++L L  N L G I +   NLT+L+ L L  N+ +G+IP  L +   L  +YL  N+
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 461 LSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLP-SCLSL 519
           LSG+IP  +G L +L  + +  NNL GPIP+    L  L+ L L  N + G +P S  SL
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNY 579
             +  + LS N + G++  ++     L  L L  N   G IP  +  LP+L  + L +N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 580 IEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTA-------LSEGYYDAVAPTWDHA 632
             GEIP  L +   + ++DLS NNL+G IP  L ++         S      +  +    
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 633 SAPALSYFPPNGSPMGKEETVQFTTKNMSYY-------YRGRI------LTSMSGIDLSC 679
            +        N      E   +FT   + Y+        +GRI      + S+  + L+ 
Sbjct: 404 RSLRRVRLQDNS--FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 680 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI 739
           NK  G +P   G   R+  L+LS N  +G +P    +L ++  L LS N L G+IP +L 
Sbjct: 462 NKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Query: 740 VLNTLAVFRVAYNNLSGKIPDRVAQF 765
               L    +++N LSG+IP   ++ 
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEM 546

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  217 bits (553), Expect = 1e-58
 Identities = 179/611 (29%), Positives = 280/611 (45%), Gaps = 75/611 (12%)

Query: 178 NLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNG 237
           N + +  +D+S   ++  ISS+ +  L  I+ + LSNN    PI  +     S L+  N 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN- 124

Query: 238 EIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNW 297
                             L++ + +G    G+ P       +L   DLS+  LSGE PN 
Sbjct: 125 ------------------LSNNNFTGSIPRGSIP-------NLETLDLSNNMLSGEIPND 159

Query: 298 LPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHL 357
           +  + + LK L L  N L G     +  L  L  L +++N  +G IP E+G  +  L  +
Sbjct: 160 I-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWI 217

Query: 358 NLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS-LEILALSNNTLQGH 416
            L  N  +G IP     +  L  LD+ YN LTG IP   ++G    L+ L L  N L G 
Sbjct: 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS--SLGNLKNLQYLFLYQNKLSGP 275

Query: 417 IFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQ 476
           I    F+L  L  L L  N   GEIPE + +   L  L+L  N+ +GKIP  L SL  LQ
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 477 DIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQ 535
            + + +N   G IP    + + L VLDLS N++ G +P  L S G++ ++ L  N +EG+
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395

Query: 536 LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVR 595
           +   +     L  + L  N   G +P+   KLP + ++ ++NN ++G I  +   +  ++
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 596 LIDLSHNNLSGHIPPC-----LVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKE 650
           ++ L+ N   G +P       L N  LS   +    P                       
Sbjct: 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR---------------------- 493

Query: 651 ETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI 710
                         +   L+ +  + LS NKL+GEIP ++    ++ +L+LSHN L+G I
Sbjct: 494 --------------KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539

Query: 711 PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEE 770
           P +FS +  +  LDLS N L G+IP  L  + +L    +++N+L G +P   A F     
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA-FLAINA 598

Query: 771 DSYEGNPFLCG 781
            +  GN  LCG
Sbjct: 599 SAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  215 bits (549), Expect = 3e-58
 Identities = 162/485 (33%), Positives = 242/485 (49%), Gaps = 35/485 (7%)

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
           +SL+ LN+++N  TG+ P G   +  L  L + NN L G +P  + + +SL+VLD+  N 
Sbjct: 118 SSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175

Query: 192 LTENISSSPLMHLTSIEELILSNNHF--QIPISLEPLFNLSKLKTFNGEIYAETESHYNS 249
           L   I +S L +LTS+E L L++N    QIP  L  + +L         IY      YN+
Sbjct: 176 LVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLK-------WIYL----GYNN 223

Query: 250 LTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLL 309
           L+                G  P  +     LN+ DL + NL+G  P+ L  N  +L+ L 
Sbjct: 224 LS----------------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLF 266

Query: 310 LANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIP 369
           L  N L G     I  LQKL +LD+S+N   G IP E+   L  L  L+L  N F G IP
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIP 325

Query: 370 SSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKR 429
            +   +  L+ L +  N+ +G IP+ +     +L +L LS N L G I     +  NL +
Sbjct: 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFK 384

Query: 430 LQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPI 489
           L L  N   GEIP+SL  C  L  + L DN  SG++P     L  +  + + NNNL+G I
Sbjct: 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Query: 490 PNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTL 549
            +    +  L++L L+ N  FG LP       +E + LS+N+  G +   +     L+ L
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504

Query: 550 DLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609
            LS N+L G IP+ +    +L  + L++N + G+IP    ++  +  +DLS N LSG IP
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Query: 610 PCLVN 614
             L N
Sbjct: 565 KNLGN 569

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  194 bits (495), Expect = 2e-51
 Identities = 162/488 (33%), Positives = 235/488 (48%), Gaps = 87/488 (17%)

Query: 128 LANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDV 187
           L N+TSL+ L +ASNQL G  P    ++  L+ +Y+  N+L G +P  +  LTSL  LD+
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 188 SYNQLTENISSSPLMHLTSIEELILSNNHF--QIPISLEPLFNLSKLKTFNGEIYAETES 245
            YN LT  I SS L +L +++ L L  N     IP S   +F+L KL             
Sbjct: 244 VYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPS---IFSLQKL------------- 286

Query: 246 HYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDL 305
                        ISL                      DLS  +LSGE P  + +     
Sbjct: 287 -------------ISL----------------------DLSDNSLSGEIPELVIQ----- 306

Query: 306 KTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFN 365
                               LQ L  L + +N F G IPV + T LP L  L L  N F+
Sbjct: 307 --------------------LQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFS 345

Query: 366 GSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS--LEILALSNNTLQGHIFSEKFN 423
           G IP +      L  LD+S N LTG IPE +   C S  L  L L +N+L+G I      
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL---CSSGNLFKLILFSNSLEGEIPKSLGA 402

Query: 424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNN 483
             +L+R++L  N F GE+P   +K  L+  L +S+N+L G+I      + +LQ + +  N
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 484 NLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHY 542
              G +P+ F     L+ LDLS N   G +P  L SL  + Q+ LS+NK+ G++   +  
Sbjct: 463 KFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521

Query: 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN 602
              LV+LDLS+N+L G IP    ++P LS + L+ N + GEIP  L  ++ +  +++SHN
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Query: 603 NLSGHIPP 610
           +L G +P 
Sbjct: 582 HLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  184 bits (469), Expect = 5e-48
 Identities = 152/471 (32%), Positives = 223/471 (47%), Gaps = 38/471 (8%)

Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPL 226
           ++ G +   +  L  ++ +++S NQL+  I        +S+  L LSNN+F   I    +
Sbjct: 80  NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI 139

Query: 227 FNLSKL----KTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNN 282
            NL  L       +GEI  +  S  +       L  + L G    G  P  L +   L  
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSS-------LKVLDLGGNVLVGKIPNSLTNLTSLEF 192

Query: 283 ADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGH 342
             L+   L G+ P  L +  + LK + L  N+L G     I  L  L  LD+  N   G 
Sbjct: 193 LTLASNQLVGQIPRELGQMKS-LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251

Query: 343 IPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS 402
           IP  +G  L  L +L L +N  +G IP S   ++ L SLD+S N L+G IPE +     +
Sbjct: 252 IPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQN 309

Query: 403 LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462
           LEIL L +N   G I     +L  L+ LQL  NKF GEIP++L K   L  L LS N+L+
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Query: 463 GKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGS 521
           G+IP  L S   L  +I+ +N+LEG IP        L+ + L +NS  G LPS  + L  
Sbjct: 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429

Query: 522 IEQVHLSKNKIEGQLESIIHYYPYLVTLD-----------------------LSYNRLHG 558
           +  + +S N ++G++ S     P L  L                        LS N+  G
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG 489

Query: 559 SIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609
           ++P  +  L +L  + L+ N + GEIP +L   K++  +DLSHN LSG IP
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (406), Expect = 2e-40
 Identities = 156/512 (30%), Positives = 240/512 (46%), Gaps = 65/512 (12%)

Query: 6   NLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRM 65
           NLE L L  +++   ++   I SFSSLK L + G VL G +         NL        
Sbjct: 141 NLETLDL-SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS----LTNL-------- 187

Query: 66  LVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLL 125
                            SL  L+L+ ++L      + G  ++  L+ +Y+  N+L   + 
Sbjct: 188 ----------------TSLEFLTLASNQLVGQIPRELG--QMKSLKWIYLGYNNLSGEIP 229

Query: 126 WCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVL 185
           + +  +TSL  L++  N LTG  P     L  L+ L++  N L G +P  + +L  L  L
Sbjct: 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289

Query: 186 DVSYNQLTENISSSPLMHLTSIEELILSNNHF--QIPISLEPLFNLSKLKTFNGEIYAET 243
           D+S N L+  I    ++ L ++E L L +N+F  +IP++L  L  L  L           
Sbjct: 290 DLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL----------- 337

Query: 244 ESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNT 303
                      QL S   S     G  PK L   ++L   DLS  NL+GE P  L  ++ 
Sbjct: 338 -----------QLWSNKFS-----GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSG 380

Query: 304 DLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNA 363
           +L  L+L +NSL G     +   + L  + + +N F G +P E  T LP +  L++S N 
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNN 439

Query: 364 FNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFN 423
             G I S   DM  L+ L ++ N+  G +P+  + G   LE L LS N   G +  +  +
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGS 497

Query: 424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNN 483
           L+ L +L+L  NK  GEIP+ LS C  L  L LS N LSG+IP     +  L  + +  N
Sbjct: 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557

Query: 484 NLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPS 515
            L G IP     ++ L  +++S+N + G+LPS
Sbjct: 558 QLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  135 bits (341), Expect = 2e-32
 Identities = 116/386 (30%), Positives = 171/386 (44%), Gaps = 46/386 (11%)

Query: 406 LALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSK-CYLLGGLYLSDNHLSGK 464
           + LS   + G I S  F L  ++ + L  N+  G IP+ +      L  L LS+N+ +G 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 465 IPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIE 523
           IPR  GS+  L+ + + NN L G IPN+      LKVLDL  N + G +P+ L+ L S+E
Sbjct: 134 IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191

Query: 524 QVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGE 583
            + L+ N++ GQ+   +     L  + L YN L G IP  I  L  L+++ L  N + G 
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251

Query: 584 IPVQLCQLKEVRLIDLSHNNLSGHIPPC------LVNTALSEGYYDAVAPTWDHASAPAL 637
           IP  L  LK ++ + L  N LSG IPP       L++  LS+       P          
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP---------- 301

Query: 638 SYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIR 697
                       E  +Q              L ++  + L  N  TG+IP  +  L R++
Sbjct: 302 ------------ELVIQ--------------LQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 698 ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGK 757
            L L  N  +G IP        +  LDLS N L G+IP  L     L    +  N+L G+
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395

Query: 758 IPDRVAQFSTFEEDSYEGNPFLCGLP 783
           IP  +    +      + N F   LP
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 5e-15
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 29/177 (16%)

Query: 672 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731
           + G+ L    L G IP  I  L  ++++NLS N++ G IP +  ++  +E LDLSYN  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 732 GKIPPQLIVLNTLAVFRVAYNNLSGKIP----DRVAQFSTFEEDSYEGNPFLCGLPLSKS 787
           G IP  L  L +L +  +  N+LSG++P     R+   ++F   ++  N  LCG+P  ++
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF---NFTDNAGLCGIPGLRA 536

Query: 788 CDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVLYINPYWRRR 844
           C                  G  L       I F VS   + + I  +     +W+RR
Sbjct: 537 C------------------GPHLSVGAKIGIAFGVSVAFLFLVICAMC----WWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 6e-12
 Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 28/131 (21%)

Query: 458 DNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL 517
           D        +W    L L      N  L G IPN+  +L  L+ ++LS NSI G +P   
Sbjct: 408 DCQFDSTKGKWFIDGLGLD-----NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP--P 460

Query: 518 SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN 577
           SLGSI                       L  LDLSYN  +GSIP  + +L  L  + L  
Sbjct: 461 SLGSI---------------------TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

Query: 578 NYIEGEIPVQL 588
           N + G +P  L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 5e-11
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 308 LLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGS 367
           L L N  L G     I  L+ L ++++S N   G+IP  +G+ +  L  L+LS N+FNGS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGS 481

Query: 368 IPSSFADMKMLKSLDISYNQLTGAIP 393
           IP S   +  L+ L+++ N L+G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 4e-10
 Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 26/114 (22%)

Query: 332 LDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGA 391
           L + N    G IP +I + L  L  +NLS N+  G+IP S   +  L+ LD+SYN   G+
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 392 IPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL 445
           IPE +                           LT+L+ L L+GN   G +P +L
Sbjct: 482 IPESLG-------------------------QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 3e-09
 Identities = 33/88 (37%), Positives = 49/88 (55%)

Query: 430 LQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPI 489
           L LD     G IP  +SK   L  + LS N + G IP  LGS+ +L+ + +  N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 490 PNEFCQLDCLKVLDLSNNSIFGTLPSCL 517
           P    QL  L++L+L+ NS+ G +P+ L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 25/117 (21%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGH 416
           L L      G IP+  + ++ L+S+++S N + G IP  +                    
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG------------------- 463

Query: 417 IFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLL 473
                 ++T+L+ L L  N F G IPESL +   L  L L+ N LSG++P  LG  L
Sbjct: 464 ------SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 6e-08
 Identities = 27/64 (42%), Positives = 35/64 (54%)

Query: 549 LDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI 608
           L L    L G IPN I KL  L  I L+ N I G IP  L  +  + ++DLS+N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 609 PPCL 612
           P  L
Sbjct: 483 PESL 486

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 443 ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL 502
           +S    + + GL L +  L G IP  +  L  LQ I +  N++ G IP     +  L+VL
Sbjct: 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471

Query: 503 DLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP 561
           DLS NS  G++P  L  L S+  ++L+ N + G++ + +               LH +  
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL-----------LHRASF 520

Query: 562 NWID 565
           N+ D
Sbjct: 521 NFTD 524

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 10/187 (5%)

Query: 49  QDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMA--SLRILSLSYSRLNKNTILDQGLCE 106
                 +NL +L+    L          +SE +   +L  L L  + +     L   L  
Sbjct: 81  SSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKS 140

Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
             +L+EL + DN +   L   L N+ +L+ L+++ N L+ + P     L  L  L +  N
Sbjct: 141 --NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGN 196

Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF-QIPISLEP 225
            +   LP  +  L++L  LD+S N + E +SS  L +L ++  L LSNN    +P S+  
Sbjct: 197 KIS-DLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDLPESIGN 253

Query: 226 LFNLSKL 232
           L NL  L
Sbjct: 254 LSNLETL 260

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 3e-07
 Identities = 28/91 (30%), Positives = 50/91 (54%)

Query: 522 IEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE 581
           I+ + L    + G + + I    +L +++LS N + G+IP  +  +  L  + L+ N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 582 GEIPVQLCQLKEVRLIDLSHNNLSGHIPPCL 612
           G IP  L QL  +R+++L+ N+LSG +P  L
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 32/85 (37%), Positives = 45/85 (52%)

Query: 406 LALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKI 465
           L L N  L+G I ++   L +L+ + L GN   G IP SL     L  L LS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 466 PRWLGSLLALQDIIMPNNNLEGPIP 490
           P  LG L +L+ + +  N+L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.9 bits (124), Expect = 8e-07
 Identities = 74/264 (28%), Positives = 111/264 (42%), Gaps = 38/264 (14%)

Query: 277 QHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSN 336
              L+ + +S L+ S          N      L  N +   S    +  L  L +LD+ N
Sbjct: 72  LDLLSPSGISSLDGSENL------LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDN 125

Query: 337 NFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERM 396
           N     IP  IG     L  L+LS N    S+PS   ++  LK+LD+S+N L+       
Sbjct: 126 NNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS------- 176

Query: 397 AMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYL 456
                               +     NL+NL  L L GNK I ++P  +     L  L L
Sbjct: 177 -------------------DLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDL 216

Query: 457 SDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSC 516
           S+N +  ++   L +L  L  + + NN LE  +P     L  L+ LDLSNN I  ++ S 
Sbjct: 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSL 273

Query: 517 LSLGSIEQVHLSKNKIEGQLESII 540
            SL ++ ++ LS N +   L  I 
Sbjct: 274 GSLTNLRELDLSGNSLSNALPLIA 297

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 137 LNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENI 196
           L + +  L G  P    +L  L+ + +  N +RG++P  L ++TSL VLD+SYN    +I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 197 SSSPLMHLTSIEELILSNNHF--QIPISL 223
             S L  LTS+  L L+ N    ++P +L
Sbjct: 483 PES-LGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
           L HLQ + +  N +R ++   L ++TSL+VL+++ N   G+ P    +L  LR L ++ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 167 DLRGSLP 173
            L G +P
Sbjct: 501 SLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 31/56 (55%)

Query: 675 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 730
           +DLS N+LT         L  ++ L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 328 KLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ 387
            L +LD+SNN  L  IP      LP L  L+LS N      P +F+ +  L+SLD+S N 
Sbjct: 1   NLKSLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 388 L 388
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
           L+ L + NN L          L +L+VLD+S N LT  IS      L S+  L LS N+ 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 3e-05
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 5/183 (2%)

Query: 423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482
           NL  L  L L+ N+    I E L    L   L L +N+++  IP  +G L +    +  +
Sbjct: 91  NLLPLPSLDLNLNRLRSNISELLELTNLTS-LDLDNNNIT-DIPPLIGLLKSNLKELDLS 148

Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHY 542
           +N    +P+    L  LK LDLS N +        +L ++  + LS NKI   L   I  
Sbjct: 149 DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL 207

Query: 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN 602
              L  LDLS N +   + + +  L  LS + L+NN +E ++P  +  L  +  +DLS+N
Sbjct: 208 LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265

Query: 603 NLS 605
            +S
Sbjct: 266 QIS 268

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP 711
           +TS+  +DLS N   G IP  +G LT +R LNL+ N+L+G +P
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 134 LQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 193
           LQ +N++ N + GN PP    +  L  L +  N   GS+P  L  LTSLR+L+++ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 194 ENISSS 199
             + ++
Sbjct: 504 GRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHI 343
            L +  L G  PN + +    L+++ L+ NS+ G+    +  +  L  LD+S N F G I
Sbjct: 424 GLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 344 PVEIGTYLPGLMHLNLSRNAFNGSIPSS 371
           P  +G  L  L  LNL+ N+ +G +P++
Sbjct: 483 PESLGQ-LTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 75/274 (27%), Positives = 115/274 (41%), Gaps = 36/274 (13%)

Query: 155 LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSN 214
           L+ L  L ++ N LR ++   L  LT+L  LD+  N +T+      L+   +++EL LS+
Sbjct: 92  LLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKS-NLKELDLSD 149

Query: 215 NHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFL 274
           N  +I     PL NL  LK          +  +N L+                   PK L
Sbjct: 150 N--KIESLPSPLRNLPNLK--------NLDLSFNDLS-----------------DLPKLL 182

Query: 275 YHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDV 334
            +  +LNN DLS   +S + P    E  + L+ L L+NNS+       +  L+ L+ L++
Sbjct: 183 SNLSNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239

Query: 335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE 394
           SNN        E    L  L  L+LS N    S  SS   +  L+ LD+S N L+ A+P 
Sbjct: 240 SNNKLED--LPESIGNLSNLETLDLSNN--QISSISSLGSLTNLRELDLSGNSLSNALPL 295

Query: 395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLK 428
              +      +L L        +      L N  
Sbjct: 296 IALLLLLLELLLNLLLTLKALELKLNSILLNNNI 329

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 69/310 (22%), Positives = 93/310 (30%), Gaps = 73/310 (23%)

Query: 278 HDLNNADLSHLNLSGEFPNWLPEN---NTDLKTLLLANNSLFGSFRMPIHCLQ------K 328
             L    L    L  E    L         LK L L+ N      R     LQ       
Sbjct: 23  LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82

Query: 329 LATLDVSNNFFLGHIP--VEIGTYLPGLMHLNLSRNAFNGS----IPSSFADMKM-LKSL 381
           L  LD+S+N         +E       L  L L+ N         +     D+   L+ L
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 382 DISYNQLTGAIPERMAMGCF----SLEILALSNNTLQG----HIFSEKFNLTNLKRLQLD 433
            +  N+L GA  E +A         L+ L L+NN +       +        NL+ L L+
Sbjct: 143 VLGRNRLEGASCEALA-KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 434 GN-------KFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE 486
            N         + E   SL     L  L L DN+L+           AL   ++  N   
Sbjct: 202 NNGLTDEGASALAETLASLKS---LEVLNLGDNNLTDAG------AAALASALLSPN--- 249

Query: 487 GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYL 546
                       L  L LS N I  T      L             E   E        L
Sbjct: 250 ----------ISLLTLSLSCNDI--TDDGAKDL------------AEVLAEK-----ESL 280

Query: 547 VTLDLSYNRL 556
           + LDL  N+ 
Sbjct: 281 LELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 22/59 (37%), Positives = 28/59 (47%)

Query: 546 LVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL 604
           L +LDLS NRL          LP L  + L+ N +    P     L  +R +DLS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN 411
            L  L+LS N        +F  +  LK LD+S N LT  I      G  SL  L LS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 525 VHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI 580
           + LS N++    +      P L  LDLS N L    P     LP L  + L+ N +
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 109 HLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDL 168
           +L+ L + +N L          + +L+VL+++ N LT   P  F  L  LR L +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 18/60 (30%), Positives = 26/60 (43%)

Query: 426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL 485
           NLK L L  N+       +      L  L LS N+L+   P     L +L+ + +  NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 19/56 (33%), Positives = 27/56 (48%)

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI 509
           L LS+N L+         L  L+ + +  NNL    P  F  L  L+ LDLS N++
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 19/153 (12%)

Query: 83  SLRILSLSYSRLNKN--TILDQGLCELVH-LQELYIRDNDLRDSLLWCLAN----MTSLQ 135
           SL+ L L+ + L      +L +GL +L   L++L +  N L  +    LA        L+
Sbjct: 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168

Query: 136 VLNVASNQLTGN----FPPGFCELVLLRELYIDNNDLR----GSLPLCLANLTSLRVLDV 187
            LN+A+N +          G      L  L ++NN L      +L   LA+L SL VL++
Sbjct: 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228

Query: 188 SYNQLTE----NISSSPLMHLTSIEELILSNNH 216
             N LT+     ++S+ L    S+  L LS N 
Sbjct: 229 GDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	874
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.6
PLN03150	623	hypothetical protein; Provisional	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.74
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.66
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.03
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.02
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.76
KOG4341	483	consensus F-box protein containing LRR [General fu	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.69
KOG4341	483	consensus F-box protein containing LRR [General fu	97.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.61
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.46
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.44
PRK15386	426	type III secretion protein GogB; Provisional	97.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.55
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.17
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.57
KOG4308	478	consensus LRR-containing protein [Function unknown	94.88
KOG4308	478	consensus LRR-containing protein [Function unknown	91.73
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.15
smart00370	26	LRR Leucine-rich repeats, outliers.	91.15
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.85
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.99
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.31
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.27
smart00370	26	LRR Leucine-rich repeats, outliers.	89.27
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.09
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.3
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.31

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-62  Score=603.50  Aligned_cols=541  Identities=34%  Similarity=0.503  Sum_probs=474.0

Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccc-CCCCCCEEEcccccccccCCccccCCCCCCCEE
Q 042603          132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLA-NLTSLRVLDVSYNQLTENISSSPLMHLTSIEEL  210 (874)
Q Consensus       132 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  210 (874)
                      .+++.|++++|.+++..+..|..+++|++|++++|++.+.+|..+. .+++|++|+|++|++++.+|.   ..+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence            4688888888888877777888888888888888888766665543 778888888888887775554   345666666


Q ss_pred             EccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCC
Q 042603          211 ILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNL  290 (874)
Q Consensus       211 ~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l  290 (874)
                      ++++|.+.                                                 +.+|..++.+++|++|++++|.+
T Consensus       146 ~Ls~n~~~-------------------------------------------------~~~p~~~~~l~~L~~L~L~~n~l  176 (968)
T PLN00113        146 DLSNNMLS-------------------------------------------------GEIPNDIGSFSSLKVLDLGGNVL  176 (968)
T ss_pred             ECcCCccc-------------------------------------------------ccCChHHhcCCCCCEEECccCcc
Confidence            66666543                                                 44566677777888888888888


Q ss_pred             cccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccch
Q 042603          291 SGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPS  370 (874)
Q Consensus       291 ~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~  370 (874)
                      .+.+|..+ .++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++..|.
T Consensus       177 ~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~  254 (968)
T PLN00113        177 VGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPS  254 (968)
T ss_pred             cccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccCh
Confidence            77777765 57888888888888888888888888889999999999888888877655 78999999999999888898


Q ss_pred             hccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCC
Q 042603          371 SFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL  450 (874)
Q Consensus       371 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  450 (874)
                      .+.++++|++|++++|.+++.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++
T Consensus       255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  333 (968)
T PLN00113        255 SLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR  333 (968)
T ss_pred             hHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence            999999999999999999888887765 4889999999999998888888888999999999999999888988999999


Q ss_pred             CCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeC
Q 042603          451 LGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSK  529 (874)
Q Consensus       451 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~  529 (874)
                      |+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..++.+++|+.|++++|++.+.+|..+. +++|+.|++++
T Consensus       334 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~  413 (968)
T PLN00113        334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD  413 (968)
T ss_pred             CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence            99999999999999999999999999999999999999999999999999999999999988887654 88999999999


Q ss_pred             cccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCC
Q 042603          530 NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP  609 (874)
Q Consensus       530 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  609 (874)
                      |++++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|
T Consensus       414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~  492 (968)
T PLN00113        414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVP  492 (968)
T ss_pred             CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccC
Confidence            99999999999999999999999999999999999999999999999999998888765 46899999999999999888


Q ss_pred             chhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCcc
Q 042603          610 PCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQ  689 (874)
Q Consensus       610 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~  689 (874)
                      ..+.++                                                      ++|+.|++++|.+++.+|..
T Consensus       493 ~~~~~l------------------------------------------------------~~L~~L~Ls~N~l~~~~p~~  518 (968)
T PLN00113        493 RKLGSL------------------------------------------------------SELMQLKLSENKLSGEIPDE  518 (968)
T ss_pred             hhhhhh------------------------------------------------------hccCEEECcCCcceeeCChH
Confidence            776553                                                      48899999999999999999


Q ss_pred             ccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCC
Q 042603          690 IGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFE  769 (874)
Q Consensus       690 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~  769 (874)
                      ++.+++|++|+|++|.+++.+|..|+++++|+.|||++|++++.+|..+..+++|+.+++++|+++|.+|.. +++.++.
T Consensus       519 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~  597 (968)
T PLN00113        519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAIN  597 (968)
T ss_pred             HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999985 7889999


Q ss_pred             cccccCCCCCCCCC
Q 042603          770 EDSYEGNPFLCGLP  783 (874)
Q Consensus       770 ~~~~~gNp~~C~~~  783 (874)
                      ..++.|||.+||.+
T Consensus       598 ~~~~~~n~~lc~~~  611 (968)
T PLN00113        598 ASAVAGNIDLCGGD  611 (968)
T ss_pred             hhhhcCCccccCCc
Confidence            99999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.9e-57  Score=556.97  Aligned_cols=519  Identities=31%  Similarity=0.486  Sum_probs=482.3

Q ss_pred             CCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCcee
Q 042603          156 VLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF  235 (874)
Q Consensus       156 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l  235 (874)
                      ..++.|++++|.+.+..+..|..+++|++|+|++|++++.+|...+..+++|++|++++|.+.+.++.            
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------------  136 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------------  136 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc------------
Confidence            47899999999999999999999999999999999999888886677899999999999987643321            


Q ss_pred             ccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcc
Q 042603          236 NGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL  315 (874)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l  315 (874)
                                                             +.+++|++|++++|.+.+.+|..+ +.+++|++|++++|.+
T Consensus       137 ---------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l  176 (968)
T PLN00113        137 ---------------------------------------GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVL  176 (968)
T ss_pred             ---------------------------------------cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcc
Confidence                                                   235678999999999998889876 7899999999999999


Q ss_pred             cccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhH
Q 042603          316 FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPER  395 (874)
Q Consensus       316 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  395 (874)
                      .+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..
T Consensus       177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  255 (968)
T PLN00113        177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS  255 (968)
T ss_pred             cccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence            9999999999999999999999999888887765 789999999999999999999999999999999999999888887


Q ss_pred             HHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccC
Q 042603          396 MAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLAL  475 (874)
Q Consensus       396 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  475 (874)
                      +. .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus       256 l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  334 (968)
T PLN00113        256 LG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL  334 (968)
T ss_pred             Hh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence            65 59999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCc
Q 042603          476 QDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN  554 (874)
Q Consensus       476 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n  554 (874)
                      +.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+. +++|+.|++++|++++..|..+..+++|+.|++++|
T Consensus       335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n  414 (968)
T PLN00113        335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN  414 (968)
T ss_pred             CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence            9999999999999999999999999999999999998887664 789999999999999999999999999999999999


Q ss_pred             cCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCC
Q 042603          555 RLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASA  634 (874)
Q Consensus       555 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~  634 (874)
                      ++++..|..+..++.|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.                     
T Consensus       415 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~---------------------  473 (968)
T PLN00113        415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG---------------------  473 (968)
T ss_pred             EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc---------------------
Confidence            99999999999999999999999999999999999999999999999999887775431                     


Q ss_pred             CCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhc
Q 042603          635 PALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTF  714 (874)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  714 (874)
                                                        .++|+.||+++|++++.+|..+..+++|+.|+|++|++++.+|+.+
T Consensus       474 ----------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  519 (968)
T PLN00113        474 ----------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL  519 (968)
T ss_pred             ----------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH
Confidence                                              2378899999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          715 SNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       715 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      +++++|++|+|++|.+++.+|..+..+++|+.|++++|+++|.+|..+..+..+..+++.+|++.+..|
T Consensus       520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            999999999999999999999999999999999999999999999999999999999999999988555

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-40  Score=341.29  Aligned_cols=377  Identities=22%  Similarity=0.234  Sum_probs=306.2

Q ss_pred             CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603          353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL  432 (874)
Q Consensus       353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  432 (874)
                      .-+.|++++|.+....+..|.++++|+.+++.+|.++ .+|.... ...+++.|+|.+|.|+.+....+..++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            4566777777777777777777777777777777777 6666443 2445777777777777777777777777888888


Q ss_pred             cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 042603          433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT  512 (874)
Q Consensus       433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  512 (874)
                      +.|.++...-..|..-.++++|+|++|.++......|..+.+|..|.|++|+++...+..|.++++|+.|+|..|+|...
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            88877755555666666788888888888777777788888888888888888877777788888888888888887533


Q ss_pred             -CCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCC
Q 042603          513 -LPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQL  591 (874)
Q Consensus       513 -~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  591 (874)
                       .-.+.++++|+.|.+..|+|.....++|..+.++++|+|+.|++...-..|+-++++|+.|+++.|.|..+.+++....
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence             2233448888888888888888888899999999999999999998888899999999999999999998888888899


Q ss_pred             CCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccC
Q 042603          592 KEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTS  671 (874)
Q Consensus       592 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (874)
                      ++|+.|||++|+++.--+..+.-                                                      +..
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~------------------------------------------------------L~~  342 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRV------------------------------------------------------LSQ  342 (873)
T ss_pred             ccceeEeccccccccCChhHHHH------------------------------------------------------HHH
Confidence            99999999999998433333332                                                      347


Q ss_pred             cceEEcCCCcccccCCccccccccCCeEecCCcccccchh---hhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEE
Q 042603          672 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFR  748 (874)
Q Consensus       672 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~  748 (874)
                      |++|+|++|.++.....+|..+++|+.|||++|.++..+-   ..|.+|++|+.|+|.+|+|..+...+|+.+..|+.||
T Consensus       343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence            8899999999998888889999999999999999998765   4588899999999999999988888999999999999


Q ss_pred             ccCCCCcccCCCccccCCCCCcccccCCCCCCCCCCCC
Q 042603          749 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSK  786 (874)
Q Consensus       749 ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l~~  786 (874)
                      +.+|.|...-|.+|.++ .++.+.+..-.++|+|++.|
T Consensus       423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W  459 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW  459 (873)
T ss_pred             CCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence            99999998889988888 88888888888999887754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2e-39  Score=333.59  Aligned_cols=275  Identities=24%  Similarity=0.270  Sum_probs=243.1

Q ss_pred             CCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEE
Q 042603          303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD  382 (874)
Q Consensus       303 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  382 (874)
                      .++++|+|++|+|+......|.++.+|..|.|++|+++ .+|...|+.+|+|+.|+|..|.|.-.-.-.|.++++|+.|.
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk  251 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK  251 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence            45677777777777766677788888889999999988 89999998899999999999998855567899999999999


Q ss_pred             cccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCC
Q 042603          383 ISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS  462 (874)
Q Consensus       383 l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  462 (874)
                      +..|.|. .+.++.|.++.++++|+|+.|+++..-...+.+++.|+.|+++.|.|...-+++...+++|++|+|++|+++
T Consensus       252 lqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  252 LQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence            9999998 888888888999999999999999888888999999999999999999888888899999999999999999


Q ss_pred             CCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCC----CCCcccEEEeeCcccCccchh
Q 042603          463 GKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL----SLGSIEQVHLSKNKIEGQLES  538 (874)
Q Consensus       463 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~  538 (874)
                      ...+..|..+..|++|.|++|.+...-...|.++++|++|||++|.++..+.+..    .+++|+.|.+.+|++..+...
T Consensus       331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr  410 (873)
T KOG4194|consen  331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR  410 (873)
T ss_pred             cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence            8888999999999999999999988778889999999999999999988776532    288999999999999999999


Q ss_pred             hhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccC
Q 042603          539 IIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI  580 (874)
Q Consensus       539 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~  580 (874)
                      +|.++++|+.|||.+|.|..+-|.+|..+ .|++|.+..-.+
T Consensus       411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  411 AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             hhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            99999999999999999998889999988 888888765443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-41  Score=332.65  Aligned_cols=513  Identities=27%  Similarity=0.360  Sum_probs=333.5

Q ss_pred             CCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEE
Q 042603          107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLD  186 (874)
Q Consensus       107 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  186 (874)
                      -..|+.+.+++|.++.. ...+.++..|++|++++|+++ ..|++++.+..++.++.++|.++ .+|+.+..+.+|+.++
T Consensus        44 qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             hcchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            35677888888887743 345777888888888888887 66777888888888888888887 6777788888888888


Q ss_pred             cccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCC
Q 042603          187 VSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD  266 (874)
Q Consensus       187 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  266 (874)
                      .++|.+.. ++. .++.+..|+.++..+|+++                                                
T Consensus       121 ~s~n~~~e-l~~-~i~~~~~l~dl~~~~N~i~------------------------------------------------  150 (565)
T KOG0472|consen  121 CSSNELKE-LPD-SIGRLLDLEDLDATNNQIS------------------------------------------------  150 (565)
T ss_pred             ccccceee-cCc-hHHHHhhhhhhhccccccc------------------------------------------------
Confidence            88888775 555 5677777777777666554                                                


Q ss_pred             CCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChh
Q 042603          267 GGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVE  346 (874)
Q Consensus       267 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~  346 (874)
                        ..|..+..+.++..+++.+|.+.                         ...+..+. ++.|+++|...|.+. .+|.+
T Consensus       151 --slp~~~~~~~~l~~l~~~~n~l~-------------------------~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~  201 (565)
T KOG0472|consen  151 --SLPEDMVNLSKLSKLDLEGNKLK-------------------------ALPENHIA-MKRLKHLDCNSNLLE-TLPPE  201 (565)
T ss_pred             --cCchHHHHHHHHHHhhccccchh-------------------------hCCHHHHH-HHHHHhcccchhhhh-cCChh
Confidence              12333444444444555555544                         33333232 555666666666554 66666


Q ss_pred             hhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCC
Q 042603          347 IGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTN  426 (874)
Q Consensus       347 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  426 (874)
                      ++. +.+|+.|++.+|+|. ..| .|.+|..|+++.++.|+|. .+|....++++++..||+..|+++ ..|+.+.-+++
T Consensus       202 lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs  276 (565)
T KOG0472|consen  202 LGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS  276 (565)
T ss_pred             hcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence            654 566666666677666 445 5666666777777776666 666666666666666666666666 34455555566


Q ss_pred             CCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhcccc---CCeeecCCCcccccCCccccCCCCCCEEE
Q 042603          427 LKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA---LQDIIMPNNNLEGPIPNEFCQLDCLKVLD  503 (874)
Q Consensus       427 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  503 (874)
                      |.+||+++|.++ ..|..++++ .|+.|-+.+|.+.. +.+.+-+...   |++|.=   .+.   .+.++.-..=+.= 
T Consensus       277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs---~~~---~dglS~se~~~e~-  346 (565)
T KOG0472|consen  277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS---KIK---DDGLSQSEGGTET-  346 (565)
T ss_pred             hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH---hhc---cCCCCCCcccccc-
Confidence            666666666665 445556666 56666666666542 2222211111   111110   000   0000000000000 


Q ss_pred             CcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCC--CCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc
Q 042603          504 LSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYP--YLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE  581 (874)
Q Consensus       504 L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  581 (874)
                       ......+..|......+.+.|++++-+++.++.+.|..-.  -....+++.|++. ++|..+..++.+.+.-+..|+..
T Consensus       347 -~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  347 -AMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI  424 (565)
T ss_pred             -cCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence             0001122334444466778888888888888877776543  3678899999988 67877776666655444444444


Q ss_pred             ccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcc
Q 042603          582 GEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMS  661 (874)
Q Consensus       582 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (874)
                      +.+|..++.+++|..|+|++|.+. .+|..++.+.                                             
T Consensus       425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv---------------------------------------------  458 (565)
T KOG0472|consen  425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV---------------------------------------------  458 (565)
T ss_pred             ccchHHHHhhhcceeeecccchhh-hcchhhhhhh---------------------------------------------
Confidence            588888899999999999988875 6777665532                                             


Q ss_pred             cccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC
Q 042603          662 YYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL  741 (874)
Q Consensus       662 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l  741 (874)
                               .|+.||+|.|+|. .+|+.+-.+..++.+-.++|++..+.|+.+.++.+|.+|||.+|.+. .+|+.++++
T Consensus       459 ---------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm  527 (565)
T KOG0472|consen  459 ---------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM  527 (565)
T ss_pred             ---------hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence                     6888999999988 88988888888888888889999888888999999999999999998 788889999


Q ss_pred             CCCCeEEccCCCCcccCCCccccCCCCCcccccCC
Q 042603          742 NTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGN  776 (874)
Q Consensus       742 ~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gN  776 (874)
                      ++|+.|++++|+++ .++..+--..+...++|.++
T Consensus       528 tnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrd  561 (565)
T KOG0472|consen  528 TNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRD  561 (565)
T ss_pred             cceeEEEecCCccC-CCHHHHhccChHHHHHHhcc
Confidence            99999999999998 33332222233334444444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.9e-39  Score=314.84  Aligned_cols=480  Identities=25%  Similarity=0.334  Sum_probs=331.0

Q ss_pred             CCcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCC
Q 042603           56 NLEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSL  134 (874)
Q Consensus        56 ~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  134 (874)
                      -|..+++++|.+. ....     +.++..|.+|++.+|++..   +|.+++.+..++.++.++|+++ .+|..++.+.+|
T Consensus        46 ~l~~lils~N~l~~l~~d-----l~nL~~l~vl~~~~n~l~~---lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l  116 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRED-----LKNLACLTVLNVHDNKLSQ---LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISL  116 (565)
T ss_pred             chhhhhhccCchhhccHh-----hhcccceeEEEeccchhhh---CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhh
Confidence            3455555555544 2222     4555666666666665554   4455566666666666666654 445555556666


Q ss_pred             CEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccc
Q 042603          135 QVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSN  214 (874)
Q Consensus       135 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  214 (874)
                      +.++.++|.+. ..|++++.+..|+.++..+|+++ ..|+++..+.+|..+++.+|++.. .|...+ +++.|++|+...
T Consensus       117 ~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i-~m~~L~~ld~~~  192 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHI-AMKRLKHLDCNS  192 (565)
T ss_pred             hhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHH-HHHHHHhcccch
Confidence            66666666655 44555666666666666666655 345555566666666666666554 343222 255555555544


Q ss_pred             cccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccC
Q 042603          215 NHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEF  294 (874)
Q Consensus       215 n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~  294 (874)
                      |.+                                                  +.+|..++.+.+|..+++.+|.+. .+
T Consensus       193 N~L--------------------------------------------------~tlP~~lg~l~~L~~LyL~~Nki~-~l  221 (565)
T KOG0472|consen  193 NLL--------------------------------------------------ETLPPELGGLESLELLYLRRNKIR-FL  221 (565)
T ss_pred             hhh--------------------------------------------------hcCChhhcchhhhHHHHhhhcccc-cC
Confidence            432                                                  246777888888888899999887 67


Q ss_pred             CcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccC
Q 042603          295 PNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFAD  374 (874)
Q Consensus       295 p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~  374 (874)
                      |++  ..|+.|+++.++.|.+..........++++..||+.+|+++ ++|.++.- +.+|++||+++|.|+ ..|.++++
T Consensus       222 Pef--~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgn  296 (565)
T KOG0472|consen  222 PEF--PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGN  296 (565)
T ss_pred             CCC--CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCccccc
Confidence            753  68888999999999887666666668889999999999987 88888765 778999999999998 66778888


Q ss_pred             CCCcCEEEcccCcCCCCchhHHHhcCC--CCCEEE-------cccCcc--------cccCCccccCCCCCCeEEccCCcC
Q 042603          375 MKMLKSLDISYNQLTGAIPERMAMGCF--SLEILA-------LSNNTL--------QGHIFSEKFNLTNLKRLQLDGNKF  437 (874)
Q Consensus       375 l~~L~~L~l~~n~i~~~~~~~~~~~~~--~L~~L~-------L~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l  437 (874)
                      + .|+.|-+.+|.+. ++-..+..+-+  -|++|.       ++.-.-        ............+.++|++++-++
T Consensus       297 l-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql  374 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL  374 (565)
T ss_pred             c-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence            8 8999999999876 44433322100  011111       111100        001111222456788899998888


Q ss_pred             cccCCccccccCC---CCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCC
Q 042603          438 IGEIPESLSKCYL---LGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLP  514 (874)
Q Consensus       438 ~~~~~~~~~~~~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  514 (874)
                      + .+|..+.....   ....+++.|++. .+|..+..+..+.+.-+..|+..+.+|..++.+++|..|++++|-+.....
T Consensus       375 t-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~  452 (565)
T KOG0472|consen  375 T-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE  452 (565)
T ss_pred             c-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch
Confidence            7 55655443333   788999999998 788888777776554444444445788889999999999999998875444


Q ss_pred             CCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCC
Q 042603          515 SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEV  594 (874)
Q Consensus       515 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  594 (874)
                      +.+.+..|+.|+++.|++... |........++.+-.++|++....|+.+.++.+|.+|++.+|.+. .+|..++++++|
T Consensus       453 e~~~lv~Lq~LnlS~NrFr~l-P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL  530 (565)
T KOG0472|consen  453 EMGSLVRLQTLNLSFNRFRML-PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL  530 (565)
T ss_pred             hhhhhhhhheecccccccccc-hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccce
Confidence            556688899999999988754 556666677888888889999877888999999999999999998 788899999999


Q ss_pred             CEEEccCCcCCCCCCchh
Q 042603          595 RLIDLSHNNLSGHIPPCL  612 (874)
Q Consensus       595 ~~L~Ls~N~l~~~~p~~l  612 (874)
                      ++|++++|++.  .|+..
T Consensus       531 ~hLeL~gNpfr--~Pr~~  546 (565)
T KOG0472|consen  531 RHLELDGNPFR--QPRHQ  546 (565)
T ss_pred             eEEEecCCccC--CCHHH
Confidence            99999999996  56543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=320.61  Aligned_cols=506  Identities=24%  Similarity=0.299  Sum_probs=278.9

Q ss_pred             EEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCC
Q 042603           87 LSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN  166 (874)
Q Consensus        87 L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  166 (874)
                      +|.+++++..   +|.-+-.-..++.|+++.|.+...+.+.+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|
T Consensus         3 vd~s~~~l~~---ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen    3 VDASDEQLEL---IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN   78 (1081)
T ss_pred             cccccccCcc---cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh
Confidence            4555555543   3344444444777777777665544444555555777777777766 56767777777777777777


Q ss_pred             cCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccc
Q 042603          167 DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESH  246 (874)
Q Consensus       167 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~  246 (874)
                      .|. ..|....++.+|+++.|.+|.+.. .|. .+..+.+|++|+++.|.+.                            
T Consensus        79 ~i~-~vp~s~~~~~~l~~lnL~~n~l~~-lP~-~~~~lknl~~LdlS~N~f~----------------------------  127 (1081)
T KOG0618|consen   79 YIR-SVPSSCSNMRNLQYLNLKNNRLQS-LPA-SISELKNLQYLDLSFNHFG----------------------------  127 (1081)
T ss_pred             hHh-hCchhhhhhhcchhheeccchhhc-Cch-hHHhhhcccccccchhccC----------------------------
Confidence            776 456667777777777777776653 555 5667777777777776653                            


Q ss_pred             cCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCC
Q 042603          247 YNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCL  326 (874)
Q Consensus       247 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l  326 (874)
                                            .+|..+..+..++.+..++|.....++.                             .
T Consensus       128 ----------------------~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----------------------------~  156 (1081)
T KOG0618|consen  128 ----------------------PIPLVIEVLTAEEELAASNNEKIQRLGQ-----------------------------T  156 (1081)
T ss_pred             ----------------------CCchhHHhhhHHHHHhhhcchhhhhhcc-----------------------------c
Confidence                                  1233333333444444444411111111                             1


Q ss_pred             CcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEE
Q 042603          327 QKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEIL  406 (874)
Q Consensus       327 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L  406 (874)
                       .++.+++..|.+.+.++.++.. +..  .|++.+|.+.   -..+..+++|+.+....|++. .+..    .-++++.|
T Consensus       157 -~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L  224 (1081)
T KOG0618|consen  157 -SIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTAL  224 (1081)
T ss_pred             -cchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEEe----cCcchhee
Confidence             1444445555444444444332 111  3555555554   112444555555555555554 2111    13455555


Q ss_pred             EcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccc
Q 042603          407 ALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE  486 (874)
Q Consensus       407 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  486 (874)
                      +.++|.++.....  ..-.+|++++++.|+++ .+|+++..|.+|+.+...+|.++ .+|..+...++|+.|.+..|.+.
T Consensus       225 ~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~  300 (1081)
T KOG0618|consen  225 YADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE  300 (1081)
T ss_pred             eeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh
Confidence            6666655522221  12245666666666665 33466666666666666666664 45555555666666666666665


Q ss_pred             ccCCccccCCCCCCEEECcCCcCcccCCCCCC--CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhh
Q 042603          487 GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS--LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI  564 (874)
Q Consensus       487 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  564 (874)
                      . +|....+.+.|++|||..|++....+..+.  ...++.|+.+.|+++......-...+.|+.|.+.+|.+++..-..+
T Consensus       301 y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l  379 (1081)
T KOG0618|consen  301 Y-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL  379 (1081)
T ss_pred             h-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence            3 344455566666666666666422222222  2235555555555554432222334456666666666665554455


Q ss_pred             cCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCC
Q 042603          565 DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNG  644 (874)
Q Consensus       565 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (874)
                      .+.+.|++|+|++|++.......+.++..|+.|+||+|+++ .+|.++.+.                             
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~-----------------------------  429 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANL-----------------------------  429 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh-----------------------------
Confidence            66666666666666666444445566666666666666665 455554442                             


Q ss_pred             CCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEE
Q 042603          645 SPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLD  724 (874)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ld  724 (874)
                                               ..|++|...+|.+. ..| .+..+++|+.+|+|.|+++...-..-..-++|++||
T Consensus       430 -------------------------~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd  482 (1081)
T KOG0618|consen  430 -------------------------GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD  482 (1081)
T ss_pred             -------------------------hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence                                     25556666666666 555 666677777777777777643322222226777777


Q ss_pred             CCCCcCcccCChhhhcCCCCCeEEccCC
Q 042603          725 LSYNLLHGKIPPQLIVLNTLAVFRVAYN  752 (874)
Q Consensus       725 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  752 (874)
                      |++|.-.......|..+.++...++.-|
T Consensus       483 lSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  483 LSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccCCcccccchhhhHHhhhhhheecccC
Confidence            7777643333445555555555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=4.2e-35  Score=318.31  Aligned_cols=483  Identities=23%  Similarity=0.270  Sum_probs=215.4

Q ss_pred             EecCCCCCCCCchhhhccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCcccc-ccchhHHHHHhcCCCCCEEE
Q 042603           10 LILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVE-VDTSFLQIVSESMASLRILS   88 (874)
Q Consensus        10 L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~   88 (874)
                      +|.|++++  ..+|..+-.-..++.|+++.|.+... |.+...+.-+|+.|++++|.+. .|..     +..+.+|+.|+
T Consensus         3 vd~s~~~l--~~ip~~i~~~~~~~~ln~~~N~~l~~-pl~~~~~~v~L~~l~lsnn~~~~fp~~-----it~l~~L~~ln   74 (1081)
T KOG0618|consen    3 VDASDEQL--ELIPEQILNNEALQILNLRRNSLLSR-PLEFVEKRVKLKSLDLSNNQISSFPIQ-----ITLLSHLRQLN   74 (1081)
T ss_pred             cccccccC--cccchhhccHHHHHhhhccccccccC-chHHhhheeeeEEeeccccccccCCch-----hhhHHHHhhcc
Confidence            34444443  33444444444455555555544321 1222333333555555555544 3333     44555555555


Q ss_pred             ccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcC
Q 042603           89 LSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDL  168 (874)
Q Consensus        89 Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  168 (874)
                      ++.|.+..   .|.+..++.+|++++|.+|.+. ..|..+..+++|++||+|.|.+. .+|..+..+..++.+..++|..
T Consensus        75 ~s~n~i~~---vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~  149 (1081)
T KOG0618|consen   75 LSRNYIRS---VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEK  149 (1081)
T ss_pred             cchhhHhh---Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchh
Confidence            55555544   2345555555555555555543 44555555555555555555555 4455555555555555555511


Q ss_pred             CCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccC
Q 042603          169 RGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYN  248 (874)
Q Consensus       169 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~  248 (874)
                      ...    ++... .+.+++..|.+.+.++. .+..++.  .|+|..|.+. ..   .+.++.+|+.+.....        
T Consensus       150 ~~~----lg~~~-ik~~~l~~n~l~~~~~~-~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn--------  209 (1081)
T KOG0618|consen  150 IQR----LGQTS-IKKLDLRLNVLGGSFLI-DIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERN--------  209 (1081)
T ss_pred             hhh----hcccc-chhhhhhhhhcccchhc-chhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhc--------
Confidence            111    11111 44555555554443333 2333333  3555555443 11   1222222222222110        


Q ss_pred             CCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCc
Q 042603          249 SLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQK  328 (874)
Q Consensus       249 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  328 (874)
                            .+..+.++              -++++.++.++|.+....+..   ...+|+++++++|++.+.. ..+..+.+
T Consensus       210 ------~ls~l~~~--------------g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~lp-~wi~~~~n  265 (1081)
T KOG0618|consen  210 ------QLSELEIS--------------GPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSNLP-EWIGACAN  265 (1081)
T ss_pred             ------ccceEEec--------------CcchheeeeccCcceeecccc---ccccceeeecchhhhhcch-HHHHhccc
Confidence                  11111111              123344444444443222221   1133444555555444433 44444555


Q ss_pred             ccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCC-CCEEE
Q 042603          329 LATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS-LEILA  407 (874)
Q Consensus       329 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~-L~~L~  407 (874)
                      |+.++..+|+++ .+|..++. ..+|+.|.+..|.+. .+|....+.++|++|+|..|++. .+|+.++..... |..|+
T Consensus       266 le~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln  341 (1081)
T KOG0618|consen  266 LEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLN  341 (1081)
T ss_pred             ceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHh
Confidence            555555555553 44544443 345555555555554 33434444555555555555554 444443332222 44444


Q ss_pred             cccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccc
Q 042603          408 LSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEG  487 (874)
Q Consensus       408 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  487 (874)
                      .+.|++.......-...+.|+.|++.+|.++......+.+.+.|+.|+|++|++.......+.++..|++|++++|+++ 
T Consensus       342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-  420 (1081)
T KOG0618|consen  342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-  420 (1081)
T ss_pred             hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence            4444444332222223344555555555555444444444555555555555554333334444555555555555554 


Q ss_pred             cCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCcc
Q 042603          488 PIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNR  555 (874)
Q Consensus       488 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~  555 (874)
                      .+|+.+..+..|++|...+|++. ..|....++.|+.+|++.|+++...-..-...++|++||+++|.
T Consensus       421 ~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  421 TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            23444555555555555555544 34444444555555555554443321111112455555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.2e-33  Score=288.71  Aligned_cols=369  Identities=25%  Similarity=0.360  Sum_probs=291.9

Q ss_pred             CCcccEEEccCCcCC-ccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCC
Q 042603          326 LQKLATLDVSNNFFL-GHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLE  404 (874)
Q Consensus       326 l~~L~~L~Ls~n~l~-~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~  404 (874)
                      ++-.+-+|+++|.++ +.+|..+-+ +.+++.|.|....+. .+|+.++.+.+|+.|.+++|++. .+...+. .++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhH
Confidence            556778899999988 567777665 778999999988887 78899999999999999999887 4444433 488889


Q ss_pred             EEEcccCcccc-cCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCC
Q 042603          405 ILALSNNTLQG-HIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNN  483 (874)
Q Consensus       405 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  483 (874)
                      .+.+..|++.. -+|..+..+..|+.|||++|+++ +.|..+...+++-.|+||+|+|..+....|.+++.|-.|+|++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            99999988752 35666778889999999999987 77888888888899999999998555566778888889999999


Q ss_pred             cccccCCccccCCCCCCEEECcCCcCcc-cCCCCCCCCcccEEEeeCcccC-ccchhhhhcCCCCcEEEccCccCCCCCc
Q 042603          484 NLEGPIPNEFCQLDCLKVLDLSNNSIFG-TLPSCLSLGSIEQVHLSKNKIE-GQLESIIHYYPYLVTLDLSYNRLHGSIP  561 (874)
Q Consensus       484 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  561 (874)
                      ++. ..|.....+..|++|+|++|.+.. .+-...++++|+.|++++.+-+ .-+|..+..+.+|..+|+|.|.+. ..|
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP  238 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP  238 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence            987 566678888889999999988742 2223334677888888877544 235677788888888888888888 788


Q ss_pred             hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCC
Q 042603          562 NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFP  641 (874)
Q Consensus       562 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (874)
                      +.+-++.+|+.|+|++|+|+ ..........+|++|++|.|+++ .+|.++..+                          
T Consensus       239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL--------------------------  290 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL--------------------------  290 (1255)
T ss_pred             HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh--------------------------
Confidence            88888888888888888887 44445566778888888888887 677776654                          


Q ss_pred             CCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccc-cCCccccccccCCeEecCCcccccchhhhccCCCCC
Q 042603          642 PNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQI  720 (874)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  720 (874)
                                                  +.|+.|++.+|+++- -||..+|.+.+|+++..++|++. ..|+.+..+..|
T Consensus       291 ----------------------------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL  341 (1255)
T KOG0444|consen  291 ----------------------------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL  341 (1255)
T ss_pred             ----------------------------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence                                        377788888888763 37888888888888888888888 788888888888


Q ss_pred             CEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCC
Q 042603          721 ESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP  759 (874)
Q Consensus       721 ~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  759 (874)
                      +.|.|++|++- ..|+++.-|+-|+.||++.|+=-..+|
T Consensus       342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             HHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            88888888887 678888888888888888886433444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.7e-32  Score=282.76  Aligned_cols=385  Identities=23%  Similarity=0.284  Sum_probs=307.7

Q ss_pred             CCCCCCEEEccCCccc-ccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcC
Q 042603          301 NNTDLKTLLLANNSLF-GSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLK  379 (874)
Q Consensus       301 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~  379 (874)
                      -+|-.+-.++++|.+. +.+|.....+++++.|.|...++. .+|.++.. +.+|++|.+++|++. .+-..+..++.|+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            4566778899999998 557888888999999999998886 89988876 789999999999987 4445688889999


Q ss_pred             EEEcccCcCCC-CchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccC
Q 042603          380 SLDISYNQLTG-AIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD  458 (874)
Q Consensus       380 ~L~l~~n~i~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  458 (874)
                      .+++..|++.. -+|..+|. +..|..|+|++|++. ..|..+..-+++-.|+|++|+|..+....|.+++.|-.||||+
T Consensus        82 sv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHhhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            99999998753 46777774 888999999999998 4567777778889999999999855556677888999999999


Q ss_pred             CcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcc-cCCCCC-CCCcccEEEeeCcccCccc
Q 042603          459 NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFG-TLPSCL-SLGSIEQVHLSKNKIEGQL  536 (874)
Q Consensus       459 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~-~~~~L~~L~l~~n~i~~~~  536 (874)
                      |++. .+|..+..+..|++|+|++|.+...--..+..+++|++|.+++.+-+- .+|..+ .+.+|..++++.|++. ..
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            9998 677778889999999999998765444455667788888888876432 345444 4889999999999987 45


Q ss_pred             hhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCC-CCCCchhhcc
Q 042603          537 ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS-GHIPPCLVNT  615 (874)
Q Consensus       537 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~  615 (874)
                      |..+-.+++|+.|+||+|+|+ .+.-..+...+|++|+++.|+++ ..|.++++++.|+.|.+.+|+++ ..||..++.+
T Consensus       238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence            677778899999999999998 44455666788999999999998 88999999999999999999987 3566666553


Q ss_pred             ccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCcccccccc
Q 042603          616 ALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTR  695 (874)
Q Consensus       616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~  695 (874)
                                                                            ..|+.+..++|.+. .+|+.+..+..
T Consensus       316 ------------------------------------------------------~~Levf~aanN~LE-lVPEglcRC~k  340 (1255)
T KOG0444|consen  316 ------------------------------------------------------IQLEVFHAANNKLE-LVPEGLCRCVK  340 (1255)
T ss_pred             ------------------------------------------------------hhhHHHHhhccccc-cCchhhhhhHH
Confidence                                                                  37778888899888 89999999999


Q ss_pred             CCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          696 IRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       696 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      |+.|.|++|++. ..|+++.-|+.|+.|||..|+=--..|.--..-++|+.-++.
T Consensus       341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             HHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            999999999998 789999999999999999997653333211122455555444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.94  E-value=1.2e-28  Score=243.40  Aligned_cols=248  Identities=24%  Similarity=0.238  Sum_probs=124.4

Q ss_pred             EEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEccc-CcCCCCchhHHHhcCCCCCEEEcc
Q 042603          331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISY-NQLTGAIPERMAMGCFSLEILALS  409 (874)
Q Consensus       331 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~L~~L~L~  409 (874)
                      .++|..|+|+ .||...|+.+++|+.|||++|.|+.+.|++|.++++|..|-+.+ |+|+ .+|...|.++.+++.|.+.
T Consensus        71 eirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   71 EIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             EEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcC
Confidence            3444444444 44444444444555555555555444455555544444443333 4444 4444444445555555555


Q ss_pred             cCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCc-----------------------------
Q 042603          410 NNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH-----------------------------  460 (874)
Q Consensus       410 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-----------------------------  460 (874)
                      -|++.....+.|..++++..|.+.+|.+.......|..+.+++.+.+..|.                             
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p  228 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP  228 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence            555544444444455555555555554443322344444444444444443                             


Q ss_pred             -------CCCCCchhhhc-cccCCeeecCCCcccccCC-ccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCc
Q 042603          461 -------LSGKIPRWLGS-LLALQDIIMPNNNLEGPIP-NEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKN  530 (874)
Q Consensus       461 -------l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n  530 (874)
                             +...-+..|.. ...+..-..+.+...++.| ..|..+++|++|+|++|+++++-+.+|. ...+++|.|..|
T Consensus       229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N  308 (498)
T KOG4237|consen  229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN  308 (498)
T ss_pred             HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence                   21111111111 0111111112222222222 2466666666666666666665555554 566666666666


Q ss_pred             ccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccC
Q 042603          531 KIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI  580 (874)
Q Consensus       531 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~  580 (874)
                      ++..+...+|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|.+
T Consensus       309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            66666666666666666666666666666666666666666666666655

>PLN03210 Resistant to P

Probab=99.91  E-value=7.6e-23  Score=251.47  Aligned_cols=339  Identities=22%  Similarity=0.255  Sum_probs=234.0

Q ss_pred             CCccCCCcccEEEccCCc------CCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchh
Q 042603          321 MPIHCLQKLATLDVSNNF------FLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE  394 (874)
Q Consensus       321 ~~~~~l~~L~~L~Ls~n~------l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  394 (874)
                      .+|.++++|+.|.+..+.      +...+|..+....++|+.|.+.++.+. .+|..| ...+|+.|++++|++. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            356667777777775542      222345544433346778888777776 556555 4577788888877776 5555


Q ss_pred             HHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhcccc
Q 042603          395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA  474 (874)
Q Consensus       395 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  474 (874)
                      .+ ..+++|+.|+++++...+.+| .+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++
T Consensus       629 ~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        629 GV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             cc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            44 347777888887765444444 35667778888888776666777777778888888888776555666544 6777


Q ss_pred             CCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccC-------ccchhhhhcCCCCc
Q 042603          475 LQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIE-------GQLESIIHYYPYLV  547 (874)
Q Consensus       475 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~-------~~~~~~~~~l~~L~  547 (874)
                      |+.|++++|...+.+|..   ..+|+.|++++|.+. .+|....+++|++|.+.++...       ...+..+...++|+
T Consensus       706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~  781 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT  781 (1153)
T ss_pred             CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccch
Confidence            888888887655455532   356778888888875 5666666777777777664321       12222334457888


Q ss_pred             EEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCC
Q 042603          548 TLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAP  627 (874)
Q Consensus       548 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~  627 (874)
                      .|++++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..                
T Consensus       782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------------  844 (1153)
T PLN03210        782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------------  844 (1153)
T ss_pred             heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----------------
Confidence            88888888777788888888888888888876555677665 6888888888887543333211                


Q ss_pred             CccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCC-ccc
Q 042603          628 TWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH-NNL  706 (874)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l  706 (874)
                                                               .++++.|+|++|.++ .+|..+..+++|+.|+|++ |++
T Consensus       845 -----------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        845 -----------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             -----------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence                                                     236778888888888 6788888888888998887 455


Q ss_pred             ccchhhhccCCCCCCEEECCCCc
Q 042603          707 TGTIPTTFSNLKQIESLDLSYNL  729 (874)
Q Consensus       707 ~~~~p~~~~~l~~L~~LdLs~N~  729 (874)
                      + .+|..+..+++|+.+++++|.
T Consensus       883 ~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        883 Q-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             C-ccCcccccccCCCeeecCCCc
Confidence            5 567777888888888888874

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=3.8e-22  Score=245.28  Aligned_cols=342  Identities=22%  Similarity=0.255  Sum_probs=270.2

Q ss_pred             CChhhhcCCCCCcEEEccCCc------CCcccchhccCCC-CcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccc
Q 042603          343 IPVEIGTYLPGLMHLNLSRNA------FNGSIPSSFADMK-MLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQG  415 (874)
Q Consensus       343 i~~~~~~~l~~L~~L~l~~n~------i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~  415 (874)
                      +....|..+++|+.|.+..+.      +...+|..|..++ +|+.|.+.++.+. .+|..+  ...+|+.|++.+|.+..
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence            455667778999999997653      2334667777664 6999999999887 788766  36899999999999874


Q ss_pred             cCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccC
Q 042603          416 HIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQ  495 (874)
Q Consensus       416 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  495 (874)
                       ++..+..+++|+.|+++++...+.+|. +..+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+ +
T Consensus       626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence             566677899999999998876556664 7788999999999998777889999999999999999987655677665 7


Q ss_pred             CCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCC-------CCCchhhcCCC
Q 042603          496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH-------GSIPNWIDKLP  568 (874)
Q Consensus       496 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~  568 (874)
                      +++|+.|++++|...+.+|..  ..+|+.|++++|.++.++.. + .+++|+.|++.++...       ...+......+
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccccccc-c-cccccccccccccchhhccccccccchhhhhccc
Confidence            899999999999876666654  46899999999998765432 2 5788888888874422       12222333467


Q ss_pred             CCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCC
Q 042603          569 QLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMG  648 (874)
Q Consensus       569 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (874)
                      +|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... +                                  
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~----------------------------------  823 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N----------------------------------  823 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C----------------------------------
Confidence            89999999998888899999999999999999886554555432 1                                  


Q ss_pred             ccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCC
Q 042603          649 KEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN  728 (874)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  728 (874)
                                          +++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus       824 --------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        824 --------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             --------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence                                458899999998765566653   368999999999999 67889999999999999995


Q ss_pred             cCcccCChhhhcCCCCCeEEccCCC
Q 042603          729 LLHGKIPPQLIVLNTLAVFRVAYNN  753 (874)
Q Consensus       729 ~l~~~~p~~l~~l~~L~~l~ls~N~  753 (874)
                      +--..+|.....+++|+.++++++.
T Consensus       880 ~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        880 NNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCcCccCcccccccCCCeeecCCCc
Confidence            4444578888999999999999884

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=3.8e-25  Score=218.86  Aligned_cols=385  Identities=22%  Similarity=0.278  Sum_probs=259.2

Q ss_pred             EEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEccc-
Q 042603          332 LDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN-  410 (874)
Q Consensus       332 L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~-  410 (874)
                      .|-++-.++ ++|..+   .+.-..++|..|.|+.+.|.+|+.+++|+.|||++|.|+ .|....|.+++++..|-+.+ 
T Consensus        51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence            344444555 788775   358899999999999999999999999999999999999 66666777899988877666 


Q ss_pred             CcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccc----
Q 042603          411 NTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE----  486 (874)
Q Consensus       411 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----  486 (874)
                      |+|+......|.++..|+.|.+.-|++.-...+.|..++++..|.+.+|.+....-..|..+.+++.+.+..|.+.    
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence            9999998999999999999999999999888899999999999999999998554458888999999988887731    


Q ss_pred             --------ccCCccccCCCCCCEEECcCCcC-------------------------cccCCC-CC-CCCcccEEEeeCcc
Q 042603          487 --------GPIPNEFCQLDCLKVLDLSNNSI-------------------------FGTLPS-CL-SLGSIEQVHLSKNK  531 (874)
Q Consensus       487 --------~~~~~~~~~l~~L~~L~L~~n~l-------------------------~~~~~~-~~-~~~~L~~L~l~~n~  531 (874)
                              ...|..+++.....-..+.+.++                         .+.-|. ++ .+++|+.|++++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                    12222233222221111111111                         111121 12 27788888888888


Q ss_pred             cCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCC---
Q 042603          532 IEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI---  608 (874)
Q Consensus       532 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---  608 (874)
                      |+++.+.+|.+...+++|.|..|++...-...|.++..|++|+|.+|+|+...|.+|..+.+|..|.|-.|.+...-   
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA  365 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence            88888888888888888888888888666677888888888888888888888888888888888888888775321   


Q ss_pred             --------------Cch-----hhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccc
Q 042603          609 --------------PPC-----LVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRIL  669 (874)
Q Consensus       609 --------------p~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (874)
                                    |+|     +....++...+....+....    .....+...+|                    +.+
T Consensus       366 wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~e----e~~~~~s~~cP--------------------~~c  421 (498)
T KOG4237|consen  366 WLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPE----ELGCLTSSPCP--------------------PPC  421 (498)
T ss_pred             HHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCcc----ccCCCCCCCCC--------------------CCc
Confidence                          111     11111111111100000000    00000000000                    011


Q ss_pred             cCcc-eEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEE
Q 042603          670 TSMS-GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFR  748 (874)
Q Consensus       670 ~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~  748 (874)
                      +-+. ....|++.+. .+|..+.  .....|++.+|.++ .+|..  .+.+| .+|+|+|+++...-..|.+++.|.+|-
T Consensus       422 ~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tli  494 (498)
T KOG4237|consen  422 TCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLI  494 (498)
T ss_pred             chhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeE
Confidence            1121 1234444444 5555544  45566777777777 44544  45566 677777777766666777777777777


Q ss_pred             ccCC
Q 042603          749 VAYN  752 (874)
Q Consensus       749 ls~N  752 (874)
                      ++||
T Consensus       495 lsyn  498 (498)
T KOG4237|consen  495 LSYN  498 (498)
T ss_pred             EecC
Confidence            7776

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.3e-21  Score=218.67  Aligned_cols=267  Identities=22%  Similarity=0.302  Sum_probs=152.6

Q ss_pred             CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603          353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL  432 (874)
Q Consensus       353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  432 (874)
                      .-..|+++.+.++ .+|..+.  ++|+.|++++|+++ .+|..    +++|++|++++|+++.. |.   ..++|     
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~LtsL-P~---lp~sL-----  264 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTSL-PV---LPPGL-----  264 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCcc-cC---ccccc-----
Confidence            4556677777766 4555543  35666777766666 44431    34555555555555532 21   12344     


Q ss_pred             cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 042603          433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT  512 (874)
Q Consensus       433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  512 (874)
                                         +.|++++|.++ .+|..   ..+|+.|++++|+++. +|.   ..++|+.|++++|++++ 
T Consensus       265 -------------------~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-  316 (788)
T PRK15387        265 -------------------LELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-  316 (788)
T ss_pred             -------------------ceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-
Confidence                               44444444443 22221   1234455555555542 232   12456666666666653 


Q ss_pred             CCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCC
Q 042603          513 LPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK  592 (874)
Q Consensus       513 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  592 (874)
                      +|..  ...|+.|++++|++++++.    ...+|+.|++++|++++ +|..   .++|+.|++++|++.+ +|..   ..
T Consensus       317 Lp~l--p~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~  382 (788)
T PRK15387        317 LPAL--PSELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PS  382 (788)
T ss_pred             CCCC--cccccccccccCccccccc----cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cc
Confidence            2322  2346666666666665432    11467777777777773 4432   2456667777777763 4432   24


Q ss_pred             CCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCc
Q 042603          593 EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSM  672 (874)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  672 (874)
                      +|+.|++++|++++ +|..                                                         .++|
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---------------------------------------------------------~s~L  404 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---------------------------------------------------------PSEL  404 (788)
T ss_pred             ccceEEecCCcccC-CCCc---------------------------------------------------------ccCC
Confidence            67777777777762 3321                                                         1256


Q ss_pred             ceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC
Q 042603          673 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL  741 (874)
Q Consensus       673 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l  741 (874)
                      +.|++++|+++ .+|..+   .+|+.|+|++|+|+ .+|..+.++++|+.|+|++|++++.+|..+..+
T Consensus       405 ~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        405 KELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             CEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            67788888877 356432   45677788888887 567777778888888888888887777766444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.2e-20  Score=214.07  Aligned_cols=268  Identities=25%  Similarity=0.314  Sum_probs=181.4

Q ss_pred             CcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEE
Q 042603          327 QKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEIL  406 (874)
Q Consensus       327 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L  406 (874)
                      ..-..|+++++.++ .+|..+.   ++|+.|++.+|+++. +|.   ..++|++|++++|+++ .+|..    .++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----cccccee
Confidence            34668999999998 8998764   489999999999984 554   2588999999999999 67752    4689999


Q ss_pred             EcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccc
Q 042603          407 ALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE  486 (874)
Q Consensus       407 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  486 (874)
                      ++++|.++... ..   .++|+.|++++|+++. +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|.++
T Consensus       268 ~Ls~N~L~~Lp-~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        268 SIFSNPLTHLP-AL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT  335 (788)
T ss_pred             eccCCchhhhh-hc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence            99999988533 22   3568888888888873 4432   3567888888887774 3331   124555666666665


Q ss_pred             ccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcC
Q 042603          487 GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDK  566 (874)
Q Consensus       487 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  566 (874)
                      + +|..   ..+|+.|++++|++++ +|..                          .++|+.|++++|++++ +|..   
T Consensus       336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l--------------------------p~~L~~L~Ls~N~L~~-LP~l---  380 (788)
T PRK15387        336 S-LPTL---PSGLQELSVSDNQLAS-LPTL--------------------------PSELYKLWAYNNRLTS-LPAL---  380 (788)
T ss_pred             c-cccc---ccccceEecCCCccCC-CCCC--------------------------Ccccceehhhcccccc-Cccc---
Confidence            3 3321   1245555555555542 2221                          1344555555555552 3332   


Q ss_pred             CCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCC
Q 042603          567 LPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSP  646 (874)
Q Consensus       567 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (874)
                      ..+|+.|++++|++++ +|..   .++|+.|++++|+++ .+|..                                   
T Consensus       381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l-----------------------------------  420 (788)
T PRK15387        381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML-----------------------------------  420 (788)
T ss_pred             ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc-----------------------------------
Confidence            2356666777776663 3432   256778888888876 34431                                   


Q ss_pred             CCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCC
Q 042603          647 MGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNL  717 (874)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  717 (874)
                                            +.+|+.|++++|+|+ .+|..++.+++|+.|+|++|.+++..|..+..+
T Consensus       421 ----------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        421 ----------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             ----------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence                                  125667889999988 788889999999999999999999888877443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=6e-19  Score=202.04  Aligned_cols=58  Identities=24%  Similarity=0.389  Sum_probs=33.7

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccc---hhhhccCCCCCCEEECCCCcCc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT---IPTTFSNLKQIESLDLSYNLLH  731 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~LdLs~N~l~  731 (874)
                      .|+.|++++|+++ .+|..+.  ..|+.|++++|++++.   +|..++.++.+..|++.+|+++
T Consensus       368 ~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        368 TITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            5556666666666 3454443  3566666777766632   2223334466677777777775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.3e-18  Score=197.27  Aligned_cols=246  Identities=23%  Similarity=0.359  Sum_probs=118.4

Q ss_pred             CCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEc
Q 042603          280 LNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNL  359 (874)
Q Consensus       280 L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l  359 (874)
                      .+.++++++.++ .+|..++   +.|+.|++++|++...... +  ..+|++|++++|.++ .+|..+.   ++|+.|++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~LtsLP~~-l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L  248 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP---EQITTLILDNNELKSLPEN-L--QGNIKTLYANSNQLT-SIPATLP---DTIQEMEL  248 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCcCChh-h--ccCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence            455666665555 4554432   3466666666665543221 1  235666666666655 4554432   35666666


Q ss_pred             cCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcc
Q 042603          360 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIG  439 (874)
Q Consensus       360 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  439 (874)
                      ++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.   ++|+.|++++|.+++. |..+.  ++|+.|++++|+++.
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc
Confidence            666665 3444432  35666666666665 4554332   3556666666655532 22211  345555555555552


Q ss_pred             cCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCC
Q 042603          440 EIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSL  519 (874)
Q Consensus       440 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  519 (874)
                       +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|++. .+|..+  .++|+.|++++|+++. +|..+. 
T Consensus       319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~-  387 (754)
T PRK15370        319 -LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENLP-  387 (754)
T ss_pred             -CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhHH-
Confidence             23222  1345555555555553 343332  35555555555554 233333  1345555555555542 222211 


Q ss_pred             CcccEEEeeCcccCccc---hhhhhcCCCCcEEEccCccCC
Q 042603          520 GSIEQVHLSKNKIEGQL---ESIIHYYPYLVTLDLSYNRLH  557 (874)
Q Consensus       520 ~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~Ls~n~l~  557 (874)
                      ..|+.|++++|+++.++   +..+..++.+..+++.+|.++
T Consensus       388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            23555555555554332   112223344555555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1e-18  Score=187.31  Aligned_cols=89  Identities=19%  Similarity=0.259  Sum_probs=39.7

Q ss_pred             ccccccCCeEecCCcccccchhhhccC-----CCCCCEEECCCCcCc----ccCChhhhcCCCCCeEEccCCCCccc---
Q 042603          690 IGYLTRIRALNLSHNNLTGTIPTTFSN-----LKQIESLDLSYNLLH----GKIPPQLIVLNTLAVFRVAYNNLSGK---  757 (874)
Q Consensus       690 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~LdLs~N~l~----~~~p~~l~~l~~L~~l~ls~N~l~~~---  757 (874)
                      +..+++|++|++++|.+++.....+..     .+.|++|++++|.++    ..+...+..+++|+.+++++|+++..   
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~  296 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ  296 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence            334445555555555555422222211     245555555555554    12223344445555555555555532   


Q ss_pred             -CCCccccC-CCCCcccccCCCC
Q 042603          758 -IPDRVAQF-STFEEDSYEGNPF  778 (874)
Q Consensus       758 -~p~~~~~~-~~l~~~~~~gNp~  778 (874)
                       ....+..+ ..+.++++.+|||
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         297 LLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHhhcCCchhhcccCCCCC
Confidence             22222223 3445555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.1e-18  Score=187.08  Aligned_cols=276  Identities=24%  Similarity=0.282  Sum_probs=200.6

Q ss_pred             eEEccCCcCc-ccCCccccccCCCCeEEccCCcCCCC----CchhhhccccCCeeecCCCcccc------cCCccccCCC
Q 042603          429 RLQLDGNKFI-GEIPESLSKCYLLGGLYLSDNHLSGK----IPRWLGSLLALQDIIMPNNNLEG------PIPNEFCQLD  497 (874)
Q Consensus       429 ~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~  497 (874)
                      .|+|..+.++ ......+..+..|+.++++++.++..    ++..+...+++++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4677788776 34445567778899999999998642    44556677889999999988762      2334567788


Q ss_pred             CCCEEECcCCcCcccCCCCCC-C---CcccEEEeeCcccCcc----chhhhhcC-CCCcEEEccCccCCCC----Cchhh
Q 042603          498 CLKVLDLSNNSIFGTLPSCLS-L---GSIEQVHLSKNKIEGQ----LESIIHYY-PYLVTLDLSYNRLHGS----IPNWI  564 (874)
Q Consensus       498 ~L~~L~L~~n~l~~~~~~~~~-~---~~L~~L~l~~n~i~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~  564 (874)
                      +|+.|++++|.+.+..+..+. +   ++|++|++++|++++.    ....+..+ ++|+.|++++|.+++.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            999999999998754443332 3   3499999999998842    23345666 8999999999999843    34456


Q ss_pred             cCCCCCcEEEccCccCccc----CCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccC
Q 042603          565 DKLPQLSYILLANNYIEGE----IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYF  640 (874)
Q Consensus       565 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (874)
                      ..++.|++|++++|.+.+.    ++..+..+++|+.|++++|.+++..+..+....                        
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~------------------------  217 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL------------------------  217 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh------------------------
Confidence            6788999999999999853    334456677999999999998743332222210                        


Q ss_pred             CCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccc-----cccCCeEecCCccccc----chh
Q 042603          641 PPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGY-----LTRIRALNLSHNNLTG----TIP  711 (874)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p  711 (874)
                                                ..+++|+.|++++|.+++.....+..     .+.|+.|++++|.++.    .++
T Consensus       218 --------------------------~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  271 (319)
T cd00116         218 --------------------------ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA  271 (319)
T ss_pred             --------------------------cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH
Confidence                                      11358999999999998644333322     3799999999999972    345


Q ss_pred             hhccCCCCCCEEECCCCcCccc----CChhhhcC-CCCCeEEccCCCC
Q 042603          712 TTFSNLKQIESLDLSYNLLHGK----IPPQLIVL-NTLAVFRVAYNNL  754 (874)
Q Consensus       712 ~~~~~l~~L~~LdLs~N~l~~~----~p~~l~~l-~~L~~l~ls~N~l  754 (874)
                      ..+..+++|+.+|+++|.++..    ....+... +.|+.+++.+|++
T Consensus       272 ~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         272 EVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            6677779999999999999855    44455555 6889999988864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=4.5e-18  Score=149.31  Aligned_cols=170  Identities=27%  Similarity=0.484  Sum_probs=129.9

Q ss_pred             cCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCC
Q 042603          512 TLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQL  591 (874)
Q Consensus       512 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  591 (874)
                      .+|..+.++.++.|.+++|+++.++|. +..+.+|+.|++++|++. .+|..+..++.|+.|+++-|++. ..|..|+.+
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             hcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence            456667777888888888888866654 556788899999999988 67888889999999999999987 888899999


Q ss_pred             CCCCEEEccCCcCCC-CCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc
Q 042603          592 KEVRLIDLSHNNLSG-HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT  670 (874)
Q Consensus       592 ~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (874)
                      +.|+.|||..|++.. .+|..+..                                                      ++
T Consensus       102 p~levldltynnl~e~~lpgnff~------------------------------------------------------m~  127 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFY------------------------------------------------------MT  127 (264)
T ss_pred             chhhhhhccccccccccCCcchhH------------------------------------------------------HH
Confidence            999999999998863 22322221                                                      34


Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL  741 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l  741 (874)
                      .|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+- ..|..++.+++|++|.+.+|+++ .+|+.++++
T Consensus       128 tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  128 TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            6667778888777 67777888888888888888777 66777777888888888888777 555555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.2e-17  Score=146.54  Aligned_cols=179  Identities=27%  Similarity=0.458  Sum_probs=151.8

Q ss_pred             cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccccccc
Q 042603          542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGY  621 (874)
Q Consensus       542 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~  621 (874)
                      .+...+.|.+|+|+++ .+|..+..+.+|+.|++.+|++. ..|..++.++.|+.|+++-|++. ..|..++.       
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-------  100 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-------  100 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-------
Confidence            4567788999999999 67777999999999999999998 78999999999999999999986 55665544       


Q ss_pred             ccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccc-cCCccccccccCCeEe
Q 042603          622 YDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIRALN  700 (874)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~  700 (874)
                                                                     ++.|+.|||.+|++.. ..|..|..++.|+.|+
T Consensus       101 -----------------------------------------------~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen  101 -----------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             -----------------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence                                                           3478889999999874 5789999999999999


Q ss_pred             cCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCC---CcccccCCC
Q 042603          701 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTF---EEDSYEGNP  777 (874)
Q Consensus       701 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l---~~~~~~gNp  777 (874)
                      |+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|.+.-.+|+ ++++.-.   .......||
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NP  210 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENP  210 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCC
Confidence            9999999 88889999999999999999997 6889999999999999999999987776 4555432   233456677


Q ss_pred             CCC
Q 042603          778 FLC  780 (874)
Q Consensus       778 ~~C  780 (874)
                      |.-
T Consensus       211 wv~  213 (264)
T KOG0617|consen  211 WVN  213 (264)
T ss_pred             CCC
Confidence            754

>PLN03150 hypothetical protein; Provisional

Probab=99.60  E-value=2e-15  Score=173.17  Aligned_cols=119  Identities=33%  Similarity=0.602  Sum_probs=109.1

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCccccC-CCCCcccccCCCCCCCCCCCCCCC
Q 042603          751 YNNLSGKIPDRVAQF-STFEEDSYEGNPFLCGLPLSKSCD  789 (874)
Q Consensus       751 ~N~l~~~~p~~~~~~-~~l~~~~~~gNp~~C~~~l~~~c~  789 (874)
                      +|+++|.+|..+... ..+..+++.+|+++|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999876543 355678899999999987656674

>PLN03150 hypothetical protein; Provisional

Probab=99.23  E-value=2e-11  Score=140.34  Aligned_cols=113  Identities=30%  Similarity=0.470  Sum_probs=101.0

Q ss_pred             CCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCc
Q 042603          593 EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSM  672 (874)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  672 (874)
                      .++.|+|++|.++|.+|..+..+                                                      ++|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L------------------------------------------------------~~L  444 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKL------------------------------------------------------RHL  444 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCC------------------------------------------------------CCC
Confidence            47789999999999999877653                                                      489


Q ss_pred             ceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC-CCCCeEEccC
Q 042603          673 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-NTLAVFRVAY  751 (874)
Q Consensus       673 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~l~ls~  751 (874)
                      +.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ .++..+++.+
T Consensus       445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999998875 4678899999


Q ss_pred             CCCcccCC
Q 042603          752 NNLSGKIP  759 (874)
Q Consensus       752 N~l~~~~p  759 (874)
                      |...+..|
T Consensus       525 N~~lc~~p  532 (623)
T PLN03150        525 NAGLCGIP  532 (623)
T ss_pred             CccccCCC
Confidence            97543344

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=1.9e-12  Score=135.52  Aligned_cols=194  Identities=25%  Similarity=0.384  Sum_probs=132.5

Q ss_pred             CCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEc
Q 042603          496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL  575 (874)
Q Consensus       496 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  575 (874)
                      +.--...|++.|++.........+..|+.+.+..|.+.. +|..+..+..|+++||+.|+++ ..|..++.++ |+.|.+
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence            344456788888876333333336677777777777763 3556677777888888888887 5676677666 778888


Q ss_pred             cCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEE
Q 042603          576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQF  655 (874)
Q Consensus       576 ~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (874)
                      ++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+                                        
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l----------------------------------------  188 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL----------------------------------------  188 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhH----------------------------------------
Confidence            888877 67777777777788888888775 555555443                                        


Q ss_pred             EecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCC
Q 042603          656 TTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP  735 (874)
Q Consensus       656 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  735 (874)
                                    .+|+.|.+..|.+. ..|+++..|+ |..||+|+|+++ .+|-.|.+|+.|++|-|.+|++. ..|
T Consensus       189 --------------~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPP  250 (722)
T KOG0532|consen  189 --------------TSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPP  250 (722)
T ss_pred             --------------HHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CCh
Confidence                          36677777777777 5666666543 777888888887 77788888888888888888886 344


Q ss_pred             hhh---hcCCCCCeEEccCC
Q 042603          736 PQL---IVLNTLAVFRVAYN  752 (874)
Q Consensus       736 ~~l---~~l~~L~~l~ls~N  752 (874)
                      ..+   +...-.++|+..-.
T Consensus       251 AqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  251 AQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             HHHHhccceeeeeeecchhc
Confidence            433   23344556666555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=1.1e-12  Score=137.23  Aligned_cols=209  Identities=26%  Similarity=0.420  Sum_probs=164.1

Q ss_pred             EEECcCCcCcccCCC-C--CCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccC
Q 042603          501 VLDLSNNSIFGTLPS-C--LSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN  577 (874)
Q Consensus       501 ~L~L~~n~l~~~~~~-~--~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  577 (874)
                      +|.|++-++. .+|. .  ..+..-...+++.|++..+ |..+..+..|+.+.+..|.+. .+|..++++..|..++++.
T Consensus        54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFSEL-PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhh-cCCCccccccccchhhhhccccccccC-chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence            3455555554 3332 1  2356667889999999855 455667778999999999998 7889999999999999999


Q ss_pred             ccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEe
Q 042603          578 NYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTT  657 (874)
Q Consensus       578 n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  657 (874)
                      |+++ ..|..++.|+ |+.|-+++|+++ .+|..++.                                           
T Consensus       131 NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~-------------------------------------------  164 (722)
T KOG0532|consen  131 NQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL-------------------------------------------  164 (722)
T ss_pred             chhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc-------------------------------------------
Confidence            9998 7888888874 889999999997 66766552                                           


Q ss_pred             cCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChh
Q 042603          658 KNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ  737 (874)
Q Consensus       658 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~  737 (874)
                                 ...|..||.+.|.+. .+|..++++.+|+.|++..|++. -.|+.+..|+ |..||+|.|+++ .+|-.
T Consensus       165 -----------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  165 -----------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             -----------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchh
Confidence                       247888999999998 78999999999999999999999 4566666664 889999999999 78999


Q ss_pred             hhcCCCCCeEEccCCCCcccCCCc--cccCCCCCcccc
Q 042603          738 LIVLNTLAVFRVAYNNLSGKIPDR--VAQFSTFEEDSY  773 (874)
Q Consensus       738 l~~l~~L~~l~ls~N~l~~~~p~~--~~~~~~l~~~~~  773 (874)
                      |..+..|++|-|.+|.|..++-+.  .+...-|++++.
T Consensus       230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~  267 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLST  267 (722)
T ss_pred             hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence            999999999999999998543221  123334555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=3.7e-11  Score=132.51  Aligned_cols=85  Identities=32%  Similarity=0.487  Sum_probs=43.8

Q ss_pred             cceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccC
Q 042603          672 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAY  751 (874)
Q Consensus       672 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~  751 (874)
                      |+++++++|.+. .++..+..+..+..|.+++|++.. .+..++.++++++|++++|.++...+  +..+.+++.|++++
T Consensus       211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~  286 (394)
T COG4886         211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG  286 (394)
T ss_pred             hhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence            444555555322 344445555555555555555552 24455555555555555555553322  55555555555555


Q ss_pred             CCCcccCCC
Q 042603          752 NNLSGKIPD  760 (874)
Q Consensus       752 N~l~~~~p~  760 (874)
                      |.++..+|.
T Consensus       287 n~~~~~~~~  295 (394)
T COG4886         287 NSLSNALPL  295 (394)
T ss_pred             ccccccchh
Confidence            555554443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=5.4e-12  Score=128.19  Aligned_cols=191  Identities=22%  Similarity=0.215  Sum_probs=83.0

Q ss_pred             ccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCcccccccc
Q 042603           26 IASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLC  105 (874)
Q Consensus        26 l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~  105 (874)
                      =+++.+|+.+.|.++.....-.......|++++.||+++|-+.. ......+...+|+|+.|+++.|.+..... ...-.
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-w~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~  194 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN-WFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTL  194 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh-HHHHHHHHHhcccchhcccccccccCCcc-ccchh
Confidence            34445555555555543211101123345555555555554321 11122234455555555555555432110 01112


Q ss_pred             CCCCCcEEEcCCCCCCCcc-hhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCc-cccccCCCCCC
Q 042603          106 ELVHLQELYIRDNDLRDSL-LWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL-PLCLANLTSLR  183 (874)
Q Consensus       106 ~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~  183 (874)
                      .+++|+.|.++.|.++... ......+++|+.|+|.+|............+..|++|||++|.+.... -...+.++.|+
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            3455555555555555321 222344555555555555322222223334455555555555543211 12344555555


Q ss_pred             EEEcccccccccCCccc-----cCCCCCCCEEEccccccc
Q 042603          184 VLDVSYNQLTENISSSP-----LMHLTSIEELILSNNHFQ  218 (874)
Q Consensus       184 ~L~L~~n~l~~~~~~~~-----l~~l~~L~~L~l~~n~~~  218 (874)
                      .|+++.+.+......+.     ...+++|++|++..|++.
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            55555555443111101     133555555655555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.11  E-value=1.9e-11  Score=117.73  Aligned_cols=61  Identities=33%  Similarity=0.446  Sum_probs=38.3

Q ss_pred             cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCC
Q 042603          542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS  605 (874)
Q Consensus       542 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (874)
                      ....|+.+|||+|.|+ .+.+...-+|.++.|+++.|.+...  +.+..+++|+.||||+|.++
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence            3455677777777776 4455556667777777777776522  22556666666666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1e-10  Score=129.01  Aligned_cols=182  Identities=35%  Similarity=0.535  Sum_probs=124.5

Q ss_pred             CCCCCEEECcCCcCcccCCCCCCCC-cccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEE
Q 042603          496 LDCLKVLDLSNNSIFGTLPSCLSLG-SIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL  574 (874)
Q Consensus       496 l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  574 (874)
                      .+.++.|++.+|.++...+...... +|+.|++++|++..+. .....+++|+.|++++|+++ .+|...+..+.|+.|+
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            3556666666666653333222232 6777777777666442 34667788888888888887 4554444778888888


Q ss_pred             ccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEE
Q 042603          575 LANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQ  654 (874)
Q Consensus       575 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (874)
                      +++|++. .+|........|+.+++++|+.. .++..+.+                                        
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~----------------------------------------  230 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN----------------------------------------  230 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh----------------------------------------
Confidence            8888887 55555555666888888888532 22222222                                        


Q ss_pred             EEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccC
Q 042603          655 FTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI  734 (874)
Q Consensus       655 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~  734 (874)
                                    +..+..+.+++|++. ..+..++.++.++.|++++|+++...+  ++.+.+++.||+++|.++...
T Consensus       231 --------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         231 --------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             --------------cccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence                          235566678888887 447778888899999999999995544  888999999999999998777


Q ss_pred             Chhh
Q 042603          735 PPQL  738 (874)
Q Consensus       735 p~~l  738 (874)
                      |...
T Consensus       294 ~~~~  297 (394)
T COG4886         294 PLIA  297 (394)
T ss_pred             hhhh
Confidence            6553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=1.6e-11  Score=121.60  Aligned_cols=195  Identities=22%  Similarity=0.273  Sum_probs=97.7

Q ss_pred             hhccCCCCCCEEEccCCccccccc---CccccCCCCCcEEECCCcccc-----ccc--hhHHHHHhcCCCCCEEEccccC
Q 042603           24 QSIASFSSLKYLSMRGCVLKGALH---GQDFHEFKNLEHLVMDRMLVE-----VDT--SFLQIVSESMASLRILSLSYSR   93 (874)
Q Consensus        24 ~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-----~~~--~~~~~~~~~l~~L~~L~Ls~n~   93 (874)
                      +.+..+..+++++||||.+.....   ...+.+.++|+..++++-...     ++.  .++..++..+++|++|+||+|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            444455555555555555432211   223344455555555543222     111  1233334555566666666666


Q ss_pred             CCCCcc--ccccccCCCCCcEEEcCCCCCCCcch-------------hcccCCCCCCEEEccCCcCCCC----CcccccC
Q 042603           94 LNKNTI--LDQGLCELVHLQELYIRDNDLRDSLL-------------WCLANMTSLQVLNVASNQLTGN----FPPGFCE  154 (874)
Q Consensus        94 ~~~~~~--~~~~l~~l~~L~~L~L~~n~i~~~~~-------------~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~  154 (874)
                      +....+  +..-+.++..|++|.|.+|.+.-..-             ...+.-+.|+++..++|++...    +...|..
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            543221  12234456666666666665532111             1123345666666666665422    1224455


Q ss_pred             CCCCCEEEccCCcCCC----CccccccCCCCCCEEEcccccccccC---CccccCCCCCCCEEEccccccc
Q 042603          155 LVLLRELYIDNNDLRG----SLPLCLANLTSLRVLDVSYNQLTENI---SSSPLMHLTSIEELILSNNHFQ  218 (874)
Q Consensus       155 l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~~~  218 (874)
                      .+.|+.+.++.|.|..    ....+|..+++|++|||..|.++..-   ....+..+++|++|+++.|.+.
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            5666666666666542    12345566677777777776665311   1114455666777777766654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.07  E-value=3.8e-11  Score=118.90  Aligned_cols=215  Identities=19%  Similarity=0.244  Sum_probs=145.0

Q ss_pred             CCCCCCEEecCCCCCC--CCch-------hhhccCCCCCCEEEccCCccccccc---CccccCCCCCcEEECCCcccccc
Q 042603            3 NFTNLEELILVESDLH--VSQL-------LQSIASFSSLKYLSMRGCVLKGALH---GQDFHEFKNLEHLVMDRMLVEVD   70 (874)
Q Consensus         3 ~l~~L~~L~Ls~~~~~--~~~~-------~~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~   70 (874)
                      +.++|+..++|+.--+  ...+       .+.+..+|+|++||||.|.+....+   ..-+.+++.|++|.+.+|.+.-.
T Consensus        56 ~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~  135 (382)
T KOG1909|consen   56 SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE  135 (382)
T ss_pred             hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh
Confidence            4567777777776432  2222       3455667788888888887764332   12345678888888888876611


Q ss_pred             -chh---------HHHHHhcCCCCCEEEccccCCCCCc--cccccccCCCCCcEEEcCCCCCCCc----chhcccCCCCC
Q 042603           71 -TSF---------LQIVSESMASLRILSLSYSRLNKNT--ILDQGLCELVHLQELYIRDNDLRDS----LLWCLANMTSL  134 (874)
Q Consensus        71 -~~~---------~~~~~~~l~~L~~L~Ls~n~~~~~~--~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L  134 (874)
                       ...         .....+.-+.||++....|++....  .+...|...+.|+.+.+..|.|...    ...++..+++|
T Consensus       136 ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~L  215 (382)
T KOG1909|consen  136 AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHL  215 (382)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcc
Confidence             111         1122456678888888888876532  2345677778888888888887542    33567888899


Q ss_pred             CEEEccCCcCCCC----CcccccCCCCCCEEEccCCcCCCCccccc-----cCCCCCCEEEccccccccc---CCccccC
Q 042603          135 QVLNVASNQLTGN----FPPGFCELVLLRELYIDNNDLRGSLPLCL-----ANLTSLRVLDVSYNQLTEN---ISSSPLM  202 (874)
Q Consensus       135 ~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~---~~~~~l~  202 (874)
                      ++|||..|.++..    +...+..+++|+.|++++|.+......+|     ...++|++|.+.+|.++..   +....+.
T Consensus       216 evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~  295 (382)
T KOG1909|consen  216 EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA  295 (382)
T ss_pred             eeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh
Confidence            9999988887743    33456777889999999988875544333     2468899999999987631   1111345


Q ss_pred             CCCCCCEEEcccccc
Q 042603          203 HLTSIEELILSNNHF  217 (874)
Q Consensus       203 ~l~~L~~L~l~~n~~  217 (874)
                      ..+.|+.|+|++|.+
T Consensus       296 ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  296 EKPDLEKLNLNGNRL  310 (382)
T ss_pred             cchhhHHhcCCcccc
Confidence            588899999999988

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=3.2e-10  Score=105.94  Aligned_cols=127  Identities=25%  Similarity=0.320  Sum_probs=43.4

Q ss_pred             hcCCCCCEEEccccCCCCCcccccccc-CCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccc-cCCC
Q 042603           79 ESMASLRILSLSYSRLNKNTILDQGLC-ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGF-CELV  156 (874)
Q Consensus        79 ~~l~~L~~L~Ls~n~~~~~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~  156 (874)
                      .++.++++|+|++|.|+.+    +.++ .+.+|+.|++++|.|+...  .+..+++|++|++++|.|+.. ++.+ ..++
T Consensus        16 ~n~~~~~~L~L~~n~I~~I----e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp   88 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI----ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred             ccccccccccccccccccc----cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence            3455667777777777653    2343 4667777777777776432  366677777777777777743 3333 3567


Q ss_pred             CCCEEEccCCcCCCCc-cccccCCCCCCEEEcccccccccCC--ccccCCCCCCCEEEc
Q 042603          157 LLRELYIDNNDLRGSL-PLCLANLTSLRVLDVSYNQLTENIS--SSPLMHLTSIEELIL  212 (874)
Q Consensus       157 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~l  212 (874)
                      +|++|++++|+|.... -..++.+++|++|++.+|.++..-.  ...+..+|+|+.||-
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            7777777777775421 2456677888888888887764211  113566888888874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=1.1e-10  Score=112.67  Aligned_cols=134  Identities=31%  Similarity=0.365  Sum_probs=91.4

Q ss_pred             cccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCccc
Q 042603          444 SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIE  523 (874)
Q Consensus       444 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~  523 (874)
                      .....+.|+++|+++|.++ .+.+++.-.|.++.|++++|.+...  +.+..+++|+.|||++|.++...-.-..+.+++
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIK  355 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence            3445567888888888887 5666777788888888888888743  337778888889999888874333333477888


Q ss_pred             EEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCC-chhhcCCCCCcEEEccCccCcc
Q 042603          524 QVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI-PNWIDKLPQLSYILLANNYIEG  582 (874)
Q Consensus       524 ~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~  582 (874)
                      .|.+++|.|...  ..+..+-+|..||+++|+|.... -..++++|-|+.+.|.+|.+.+
T Consensus       356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            888888877544  23455566777777777776322 2345666666666666666653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=6.6e-10  Score=103.88  Aligned_cols=125  Identities=26%  Similarity=0.344  Sum_probs=46.6

Q ss_pred             cccCCeeecCCCcccccCCcccc-CCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEE
Q 042603          472 LLALQDIIMPNNNLEGPIPNEFC-QLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLD  550 (874)
Q Consensus       472 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  550 (874)
                      ..++++|+|++|.|+.+  +.+. .+.+|+.|++++|.|+ .++....++.|+.|++++|+|+.+.+.....+|+|++|+
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            33456666666666532  2333 4567777777777776 445555577788888888888776554445678888888


Q ss_pred             ccCccCCCCC-chhhcCCCCCcEEEccCccCcccC---CccccCCCCCCEEEc
Q 042603          551 LSYNRLHGSI-PNWIDKLPQLSYILLANNYIEGEI---PVQLCQLKEVRLIDL  599 (874)
Q Consensus       551 Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L  599 (874)
                      +++|+|.... -..+..+++|+.|++.+|++....   ...+..+++|+.||-
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            8888887532 245677888888888888886431   123556788888764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=9.8e-11  Score=119.20  Aligned_cols=15  Identities=27%  Similarity=0.341  Sum_probs=7.4

Q ss_pred             CCCCcEEEccCccCC
Q 042603          543 YPYLVTLDLSYNRLH  557 (874)
Q Consensus       543 l~~L~~L~Ls~n~l~  557 (874)
                      +++|+.|.+..|.++
T Consensus       325 l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  325 LENLKHLRITLNYLN  339 (505)
T ss_pred             cchhhhhhccccccc
Confidence            344555555555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1.2e-09  Score=83.80  Aligned_cols=60  Identities=45%  Similarity=0.608  Sum_probs=40.7

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcC
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL  730 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  730 (874)
                      +|+.|++++|+++...+..|.++++|++|++++|+++.+.|+.|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566677777777655556666677777777777777766666677777777777776654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.7e-09  Score=82.93  Aligned_cols=61  Identities=39%  Similarity=0.539  Sum_probs=57.6

Q ss_pred             ccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCC
Q 042603          694 TRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNL  754 (874)
Q Consensus       694 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l  754 (874)
                      ++|++|++++|+++...++.|.++++|++||+++|+++...|..|..+++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999988889999999999999999999999899999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.85  E-value=2.7e-10  Score=125.57  Aligned_cols=243  Identities=26%  Similarity=0.261  Sum_probs=127.4

Q ss_pred             CCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeC
Q 042603          450 LLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSK  529 (874)
Q Consensus       450 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~  529 (874)
                      .++.+.+..|.+.. +...+..+.++..+++.+|.+.... ..+..+++|++|++++|+|+ .+...-.++.|+.|++++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELNLSG  149 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccc-cccchhhccchhhheecc
Confidence            33344444444432 1222444445555555555554321 11444555666666666654 333333344456666666


Q ss_pred             cccCccchhhhhcCCCCcEEEccCccCCCCCc-hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCC
Q 042603          530 NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP-NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI  608 (874)
Q Consensus       530 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  608 (874)
                      |.|+.+.  .+..++.|+.+++++|++...-+ . ...+.+++.+.+.+|.+...  ..+..+..+..+++..|.++..-
T Consensus       150 N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  150 NLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             Ccchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc
Confidence            6555442  23335566666666666664333 1 34556666666666666422  22333334444455555554110


Q ss_pred             CchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc--CcceEEcCCCcccccC
Q 042603          609 PPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT--SMSGIDLSCNKLTGEI  686 (874)
Q Consensus       609 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~N~l~~~~  686 (874)
                      +.                              +                          ...  .|+.+++++|++. .+
T Consensus       225 ~l------------------------------~--------------------------~~~~~~L~~l~l~~n~i~-~~  247 (414)
T KOG0531|consen  225 GL------------------------------N--------------------------ELVMLHLRELYLSGNRIS-RS  247 (414)
T ss_pred             Cc------------------------------c--------------------------cchhHHHHHHhcccCccc-cc
Confidence            00                              0                          011  2667778888777 44


Q ss_pred             CccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCccc---CChh-hhcCCCCCeEEccCCCCcccCC
Q 042603          687 PTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK---IPPQ-LIVLNTLAVFRVAYNNLSGKIP  759 (874)
Q Consensus       687 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---~p~~-l~~l~~L~~l~ls~N~l~~~~p  759 (874)
                      +..+..+..+..|+++.|++...-  .+.....+..+..+.|++...   .... ......+....+.+|......+
T Consensus       248 ~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  248 PEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            456667777888888888777442  344556667777777776522   1111 4555667777777777766554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=4.8e-10  Score=123.56  Aligned_cols=242  Identities=26%  Similarity=0.254  Sum_probs=162.1

Q ss_pred             hccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEE
Q 042603          470 GSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTL  549 (874)
Q Consensus       470 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  549 (874)
                      ..+..++.+.+..|.+.. +-..+..+.+|+.|++.+|+|.......-.+.+|++|++++|.|+.+.+  +..++.|+.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL  145 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence            445667777788888774 3345777888999999999987444335557888888888888887643  5556678888


Q ss_pred             EccCccCCCCCchhhcCCCCCcEEEccCccCcccCC-ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCC
Q 042603          550 DLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIP-VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPT  628 (874)
Q Consensus       550 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~  628 (874)
                      ++++|.|+..  ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+...-...                 
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~-----------------  205 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD-----------------  205 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH-----------------
Confidence            8888888743  345558888888888888875544 2 467778888888888775211100                 


Q ss_pred             ccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCcccccccc--CCeEecCCccc
Q 042603          629 WDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTR--IRALNLSHNNL  706 (874)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l  706 (874)
                                                             ....+..+++..|.++..-+  +..+..  |+.+++++|.+
T Consensus       206 ---------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i  244 (414)
T KOG0531|consen  206 ---------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRI  244 (414)
T ss_pred             ---------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcc
Confidence                                                   01234445788888873332  222333  88999999999


Q ss_pred             ccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCccc---CCC-ccccCCCCCcccccCCCC
Q 042603          707 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGK---IPD-RVAQFSTFEEDSYEGNPF  778 (874)
Q Consensus       707 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~---~p~-~~~~~~~l~~~~~~gNp~  778 (874)
                      . ..+..+..+..+..||+++|+++..  ..+.....+..+....|.+...   ... ......++....+.+||.
T Consensus       245 ~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  245 S-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             c-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence            8 4446778889999999999999755  3345566677777777776522   111 022334455555555553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.74  E-value=5.3e-09  Score=122.79  Aligned_cols=108  Identities=27%  Similarity=0.352  Sum_probs=65.1

Q ss_pred             CCCCcEEEcCCCC--CCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCE
Q 042603          107 LVHLQELYIRDND--LRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRV  184 (874)
Q Consensus       107 l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  184 (874)
                      ++.|++|-+.+|.  +.......|..++.|++|||++|.--+.+|..++++.+||+|+++++.+. .+|..++++.+|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            3456666666664  34344444666666666666666555566666666666676666666666 56666666666677


Q ss_pred             EEcccccccccCCccccCCCCCCCEEEccccc
Q 042603          185 LDVSYNQLTENISSSPLMHLTSIEELILSNNH  216 (874)
Q Consensus       185 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  216 (874)
                      |++..+.-...++. ....+++|++|.+....
T Consensus       623 Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  623 LNLEVTGRLESIPG-ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eccccccccccccc-hhhhcccccEEEeeccc
Confidence            76666554333322 44456666666665543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=1.3e-08  Score=119.50  Aligned_cols=130  Identities=22%  Similarity=0.258  Sum_probs=89.6

Q ss_pred             CCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccC--CCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCC
Q 042603           54 FKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSR--LNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANM  131 (874)
Q Consensus        54 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l  131 (874)
                      ....+...+-++.+.....     -..+++|+.|-+..|.  +...  ..+.|..++.|++||+++|.=-+.+|.+++++
T Consensus       522 ~~~~rr~s~~~~~~~~~~~-----~~~~~~L~tLll~~n~~~l~~i--s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L  594 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAG-----SSENPKLRTLLLQRNSDWLLEI--SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL  594 (889)
T ss_pred             hhheeEEEEeccchhhccC-----CCCCCccceEEEeecchhhhhc--CHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence            3445555555554441111     2345567777777765  3221  22447778888888888776666788888888


Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEccccc
Q 042603          132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ  191 (874)
Q Consensus       132 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  191 (874)
                      -+|++|+++++.+. .+|..+.++.+|.+|++..+.-...+|.....+++|++|.+....
T Consensus       595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            88888888888888 778888888888888888877655566667778888888887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.66  E-value=3.9e-10  Score=121.51  Aligned_cols=179  Identities=33%  Similarity=0.415  Sum_probs=128.0

Q ss_pred             hhhccCCCCCCEEEccCCcccccccCccccCC-CCCcEEECCCccccccchhHHHHHh----------cCCCCCEEEccc
Q 042603           23 LQSIASFSSLKYLSMRGCVLKGALHGQDFHEF-KNLEHLVMDRMLVEVDTSFLQIVSE----------SMASLRILSLSY   91 (874)
Q Consensus        23 ~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~----------~l~~L~~L~Ls~   91 (874)
                      |-.+..|++||+|.+.+|.+....   .+..+ .+|+.|+..+.. .    .++.++.          .-..|...+.++
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~---GL~~lr~qLe~LIC~~Sl-~----Al~~v~ascggd~~ns~~Wn~L~~a~fsy  173 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAK---GLQELRHQLEKLICHNSL-D----ALRHVFASCGGDISNSPVWNKLATASFSY  173 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhh---hhHHHHHhhhhhhhhccH-H----HHHHHHHHhccccccchhhhhHhhhhcch
Confidence            556778888999999988876321   22222 346666654421 1    1111111          123577778888


Q ss_pred             cCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcc-cccCCCCCCEEEccCCcCCC
Q 042603           92 SRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPP-GFCELVLLRELYIDNNDLRG  170 (874)
Q Consensus        92 n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~  170 (874)
                      |.+..   +..++.-++.|+.|+|++|+++...  .+..|++|++|||++|.+.. +|. ...++. |+.|++++|.++.
T Consensus       174 N~L~~---mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~t  246 (1096)
T KOG1859|consen  174 NRLVL---MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALTT  246 (1096)
T ss_pred             hhHHh---HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh-heeeeecccHHHh
Confidence            88865   4578888999999999999998664  68899999999999999984 443 233444 9999999999874


Q ss_pred             CccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccc
Q 042603          171 SLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ  218 (874)
Q Consensus       171 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~  218 (874)
                      .  ..+.++.+|+.||+++|-+.+.-....+..+..|+.|.|.+|++.
T Consensus       247 L--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  247 L--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             h--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            4  468899999999999998886333334566788999999999875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.5e-09  Score=104.93  Aligned_cols=158  Identities=22%  Similarity=0.232  Sum_probs=85.5

Q ss_pred             CCCEEecCCCCCCCCchhhhccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCC
Q 042603            6 NLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLR   85 (874)
Q Consensus         6 ~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~   85 (874)
                      .|+++|||+..+...++...++.|.+|+.|.|.|+.+.+.+. ..+++-.+|+.|+++.+.- +.+...+.++.+|+.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG-~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSG-FTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccc-cchhHHHHHHHhhhhHh
Confidence            467777777777666666677777777777777777776664 3566667777777776643 23334555567777777


Q ss_pred             EEEccccCCCCCccccccccC-CCCCcEEEcCCCCCC--C-cchhcccCCCCCCEEEccCCc-CCCCCcccccCCCCCCE
Q 042603           86 ILSLSYSRLNKNTILDQGLCE-LVHLQELYIRDNDLR--D-SLLWCLANMTSLQVLNVASNQ-LTGNFPPGFCELVLLRE  160 (874)
Q Consensus        86 ~L~Ls~n~~~~~~~~~~~l~~-l~~L~~L~L~~n~i~--~-~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~  160 (874)
                      .|+++-|.+..... ...+.+ -++|+.|+++++.-.  . .+.--..++++|..||||.|. ++......|.+++.|++
T Consensus       264 ~LNlsWc~l~~~~V-tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKV-TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             hcCchHhhccchhh-hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            77777666544221 111111 245566666554311  0 011112345555555555442 22112223334444444


Q ss_pred             EEccCC
Q 042603          161 LYIDNN  166 (874)
Q Consensus       161 L~Ls~n  166 (874)
                      |.++.|
T Consensus       343 lSlsRC  348 (419)
T KOG2120|consen  343 LSLSRC  348 (419)
T ss_pred             eehhhh
Confidence            444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=1e-08  Score=110.86  Aligned_cols=108  Identities=27%  Similarity=0.326  Sum_probs=83.4

Q ss_pred             ccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEE
Q 042603          669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFR  748 (874)
Q Consensus       669 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~  748 (874)
                      ++.++.|||++|+++...  .+..++.|+.|||++|.++.+.--...... |+.|.+++|.++..  ..+.+|.+|..||
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence            568899999999998544  788899999999999999944333333344 99999999998754  5678999999999


Q ss_pred             ccCCCCcccCCC-ccccCCCCCcccccCCCCCCC
Q 042603          749 VAYNNLSGKIPD-RVAQFSTFEEDSYEGNPFLCG  781 (874)
Q Consensus       749 ls~N~l~~~~p~-~~~~~~~l~~~~~~gNp~~C~  781 (874)
                      +++|-|++.-.- .+..+..+..+.+.|||.-|.
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            999988764221 123456677889999999884

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1.7e-08  Score=97.92  Aligned_cols=179  Identities=20%  Similarity=0.156  Sum_probs=108.5

Q ss_pred             CCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCC-CCCc-chhcccCCCC
Q 042603           56 NLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDND-LRDS-LLWCLANMTS  133 (874)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~-~~~~~~~l~~  133 (874)
                      .|++||++...++  ...+..++..|.+|+.|.+.++++.+.+  ...+++-.+|+.|+++.+. ++.. ..--+.+|+.
T Consensus       186 Rlq~lDLS~s~it--~stl~~iLs~C~kLk~lSlEg~~LdD~I--~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  186 RLQHLDLSNSVIT--VSTLHGILSQCSKLKNLSLEGLRLDDPI--VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhHHhhcchhhee--HHHHHHHHHHHHhhhhccccccccCcHH--HHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            4777888776655  2334555777888888888888777642  3566777788888887764 2221 1223567778


Q ss_pred             CCEEEccCCcCCCCCcccc-cC-CCCCCEEEccCCcCC---CCccccccCCCCCCEEEccccc-ccccCCccccCCCCCC
Q 042603          134 LQVLNVASNQLTGNFPPGF-CE-LVLLRELYIDNNDLR---GSLPLCLANLTSLRVLDVSYNQ-LTENISSSPLMHLTSI  207 (874)
Q Consensus       134 L~~L~Ls~n~i~~~~~~~~-~~-l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L  207 (874)
                      |..|++++|.+....-..+ .+ -++|+.|++++++-.   ..+.....++++|.+|||+.|. ++..... .+.+++.|
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L  340 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYL  340 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchh
Confidence            8888888887654322211 11 246777777776411   1222334567788888887764 3322222 56677788


Q ss_pred             CEEEccccccccccCcccccCCCCCceecccc
Q 042603          208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEI  239 (874)
Q Consensus       208 ~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~  239 (874)
                      ++|.++.|....+...-.+...+.|.+++...
T Consensus       341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             eeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence            88888877644333344455666677766633

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=1.7e-07  Score=91.08  Aligned_cols=109  Identities=22%  Similarity=0.255  Sum_probs=62.4

Q ss_pred             CCcEEEcCCCCCCCcch-hcc-cCCCCCCEEEccCCcCCC--CCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCE
Q 042603          109 HLQELYIRDNDLRDSLL-WCL-ANMTSLQVLNVASNQLTG--NFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRV  184 (874)
Q Consensus       109 ~L~~L~L~~n~i~~~~~-~~~-~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  184 (874)
                      .++.|.+.++.|..+-. ..| ..+++++.+||.+|.|+.  .+..-+.++|.|++|++++|.+...+...-..+.+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            34444455554433211 222 235667777777777662  12223346777777777777766332211135567888


Q ss_pred             EEcccccccccCCccccCCCCCCCEEEcccccc
Q 042603          185 LDVSYNQLTENISSSPLMHLTSIEELILSNNHF  217 (874)
Q Consensus       185 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~  217 (874)
                      |-|.+..+.-.-....+..+|.+++|+++.|.+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            888777665333333566788888888888743

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=4e-07  Score=88.53  Aligned_cols=227  Identities=20%  Similarity=0.201  Sum_probs=126.7

Q ss_pred             CCEEecCCCCCCCC-chhhhccCCCCCCEEEccCCccccccc-CccccCCCCCcEEECCCccccccchhHHHHHhcCCCC
Q 042603            7 LEELILVESDLHVS-QLLQSIASFSSLKYLSMRGCVLKGALH-GQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASL   84 (874)
Q Consensus         7 L~~L~Ls~~~~~~~-~~~~~l~~l~~L~~L~Ls~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L   84 (874)
                      ++.|.+-++.+... .....-...++++.+||.+|.+++-.. ...+.++++|++|+++.|.+..+...++   ....+|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl  123 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNL  123 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccce
Confidence            34555666666422 222223355777777777777763321 2234577777788877777663322111   245677


Q ss_pred             CEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcc--hhcccC-CCCCCEEEccCCcCCCC--CcccccCCCCCC
Q 042603           85 RILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSL--LWCLAN-MTSLQVLNVASNQLTGN--FPPGFCELVLLR  159 (874)
Q Consensus        85 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~  159 (874)
                      ++|-|.+..+.-.. ....+..+|.++.|+++.|.+....  ...... -+.+++|.+..|...--  .-.--.-.+++.
T Consensus       124 ~~lVLNgT~L~w~~-~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~  202 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQ-STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN  202 (418)
T ss_pred             EEEEEcCCCCChhh-hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence            77777777664322 2345667777777777777544321  111111 12344444444422100  000001235666


Q ss_pred             EEEccCCcCCCCc-cccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCc-----ccccCCCCCc
Q 042603          160 ELYIDNNDLRGSL-PLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISL-----EPLFNLSKLK  233 (874)
Q Consensus       160 ~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-----~~l~~l~~L~  233 (874)
                      .+-+..|.+.... -..+..++.+..|+|+.|++..-...+.+..++.|..|.++++++..+..-     -.++.+++++
T Consensus       203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~  282 (418)
T KOG2982|consen  203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQ  282 (418)
T ss_pred             heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceE
Confidence            6777777665332 245666777778888888886644455678888888888888877533211     1245666666


Q ss_pred             eecc
Q 042603          234 TFNG  237 (874)
Q Consensus       234 ~l~~  237 (874)
                      .++.
T Consensus       283 vLNG  286 (418)
T KOG2982|consen  283 VLNG  286 (418)
T ss_pred             EecC
Confidence            6655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.14  E-value=2.2e-07  Score=79.74  Aligned_cols=59  Identities=24%  Similarity=0.468  Sum_probs=28.3

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  731 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  731 (874)
                      .++.++|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.++-.||.-+|.+.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            3344445555554 34444555555555555555554 33444444444555554444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.12  E-value=1.6e-06  Score=83.31  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=38.7

Q ss_pred             CCCCEEecCCCCCC---CCchhhhccCCCCCCEEEccCCccc---cccc------CccccCCCCCcEEECCCcccc-ccc
Q 042603            5 TNLEELILVESDLH---VSQLLQSIASFSSLKYLSMRGCVLK---GALH------GQDFHEFKNLEHLVMDRMLVE-VDT   71 (874)
Q Consensus         5 ~~L~~L~Ls~~~~~---~~~~~~~l~~l~~L~~L~Ls~~~~~---~~~~------~~~l~~l~~L~~L~l~~~~~~-~~~   71 (874)
                      ..+..++||+|.++   ..++...+.+-++|+..++|.--..   +.++      ..++..|++|+..++|+|.+. ...
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            34455555555553   1233444444455555555443111   1111      123344555555555555444 111


Q ss_pred             hhHHHHHhcCCCCCEEEccccCC
Q 042603           72 SFLQIVSESMASLRILSLSYSRL   94 (874)
Q Consensus        72 ~~~~~~~~~l~~L~~L~Ls~n~~   94 (874)
                      ..+..++++-+.|.+|.|++|.+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCC
Confidence            22333444455555555555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=5.2e-06  Score=57.86  Aligned_cols=38  Identities=37%  Similarity=0.637  Sum_probs=24.2

Q ss_pred             ccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc
Q 042603          694 TRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  732 (874)
Q Consensus       694 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  732 (874)
                      ++|++|++++|+|+ .+|..++++++|+.|++++|+|+.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            35677777777777 345556777777777777777763

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.03  E-value=3.2e-06  Score=97.18  Aligned_cols=137  Identities=22%  Similarity=0.271  Sum_probs=85.9

Q ss_pred             CCCCEEEccCCcccccccCccc-cCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCC
Q 042603           30 SSLKYLSMRGCVLKGALHGQDF-HEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELV  108 (874)
Q Consensus        30 ~~L~~L~Ls~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~  108 (874)
                      .+|++||++|...-..--+..+ .-+|+|++|.+++-.+..+.  +.....++++|+.||+|+++++..    .++++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl----~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL----SGISRLK  195 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc----HHHhccc
Confidence            4677777776543211111122 24677777777765544222  444567788888888888887763    5677888


Q ss_pred             CCcEEEcCCCCCCC-cchhcccCCCCCCEEEccCCcCCCCC--c----ccccCCCCCCEEEccCCcCCCCc
Q 042603          109 HLQELYIRDNDLRD-SLLWCLANMTSLQVLNVASNQLTGNF--P----PGFCELVLLRELYIDNNDLRGSL  172 (874)
Q Consensus       109 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~--~----~~~~~l~~L~~L~Ls~n~l~~~~  172 (874)
                      +|+.|.+.+=.+.. ..-..+-++++|++||+|........  .    +.-..+|+|+.||.|++.+....
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            88888887766554 22234567888888888876544221  1    12234789999999988876543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.02  E-value=4.8e-07  Score=77.64  Aligned_cols=88  Identities=27%  Similarity=0.417  Sum_probs=61.7

Q ss_pred             CCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCC
Q 042603          325 CLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLE  404 (874)
Q Consensus       325 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~  404 (874)
                      ....|+.+++++|.+. .+|..+...+|.++.|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..++. +.++.
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~  126 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLD  126 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHH
Confidence            3456667777777776 667666666677777788777777 66667777777777888777776 66666664 66666


Q ss_pred             EEEcccCccccc
Q 042603          405 ILALSNNTLQGH  416 (874)
Q Consensus       405 ~L~L~~n~l~~~  416 (874)
                      .|+..+|.+..+
T Consensus       127 ~Lds~~na~~ei  138 (177)
T KOG4579|consen  127 MLDSPENARAEI  138 (177)
T ss_pred             HhcCCCCccccC
Confidence            777766665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1.4e-05  Score=55.67  Aligned_cols=39  Identities=31%  Similarity=0.620  Sum_probs=33.2

Q ss_pred             cCcceEEcCCCcccccCCccccccccCCeEecCCcccccc
Q 042603          670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT  709 (874)
Q Consensus       670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  709 (874)
                      ++|++|++++|+|+ .+|..++.|++|+.|++++|+|+..
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            37899999999999 5777899999999999999999954

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=8.2e-06  Score=93.83  Aligned_cols=136  Identities=23%  Similarity=0.250  Sum_probs=72.1

Q ss_pred             CCCCCEEEccccCCCCCcccccccc-CCCCCcEEEcCCCCCCCc-chhcccCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 042603           81 MASLRILSLSYSRLNKNTILDQGLC-ELVHLQELYIRDNDLRDS-LLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLL  158 (874)
Q Consensus        81 l~~L~~L~Ls~n~~~~~~~~~~~l~-~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  158 (874)
                      -.+|++|++++....... ++..++ -+|+|++|.+++-.+... ......++++|..||+|+++++..  .+++++++|
T Consensus       121 r~nL~~LdI~G~~~~s~~-W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNG-WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhcc-HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence            445666666665443221 222333 366666666666444322 223345566666666666666633  456666666


Q ss_pred             CEEEccCCcCCC-CccccccCCCCCCEEEcccccccccC--C---ccccCCCCCCCEEEcccccccc
Q 042603          159 RELYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQLTENI--S---SSPLMHLTSIEELILSNNHFQI  219 (874)
Q Consensus       159 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~--~---~~~l~~l~~L~~L~l~~n~~~~  219 (874)
                      +.|.+.+-.+.. ..-..+.++++|++||+|........  .   ...-..+|+|+.||.+++.+..
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            666666555542 11224556677777777665433210  0   0012347777777777766554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.76  E-value=1.2e-05  Score=77.35  Aligned_cols=216  Identities=19%  Similarity=0.235  Sum_probs=142.1

Q ss_pred             CCCCCEEecCCCCCC--CCc-------hhhhccCCCCCCEEEccCCccccccc---CccccCCCCCcEEECCCcccc-cc
Q 042603            4 FTNLEELILVESDLH--VSQ-------LLQSIASFSSLKYLSMRGCVLKGALH---GQDFHEFKNLEHLVMDRMLVE-VD   70 (874)
Q Consensus         4 l~~L~~L~Ls~~~~~--~~~-------~~~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-~~   70 (874)
                      -++|+..++|+-..+  .+.       +.+++.+||+|+..+||.|.+....|   .+-++.-+.|++|.+++|... +.
T Consensus        57 ~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a  136 (388)
T COG5238          57 VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA  136 (388)
T ss_pred             hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence            456777777766432  111       35677888899999999888876655   233456788889998888765 11


Q ss_pred             -----chhHHH----HHhcCCCCCEEEccccCCCCCcc--ccccccCCCCCcEEEcCCCCCCCc-----chhcccCCCCC
Q 042603           71 -----TSFLQI----VSESMASLRILSLSYSRLNKNTI--LDQGLCELVHLQELYIRDNDLRDS-----LLWCLANMTSL  134 (874)
Q Consensus        71 -----~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L  134 (874)
                           ...+..    -.+.-|.|++.....|++.....  +...+..-.+|+++.+..|.|.-.     +...+..+++|
T Consensus       137 G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~L  216 (388)
T COG5238         137 GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSL  216 (388)
T ss_pred             hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcc
Confidence                 111111    13467889999999888854221  122334446888999999887643     12234567899


Q ss_pred             CEEEccCCcCCCC----CcccccCCCCCCEEEccCCcCCCCccccc------cCCCCCCEEEcccccccccCCcc-----
Q 042603          135 QVLNVASNQLTGN----FPPGFCELVLLRELYIDNNDLRGSLPLCL------ANLTSLRVLDVSYNQLTENISSS-----  199 (874)
Q Consensus       135 ~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~~-----  199 (874)
                      ++||+..|.++-.    +...++..+.|+.|.+..|-++.....++      ...++|+.|-..+|...+.+...     
T Consensus       217 evLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~  296 (388)
T COG5238         217 EVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNE  296 (388)
T ss_pred             eeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhh
Confidence            9999999988743    23355667789999999998875443322      23578999999999776543321     


Q ss_pred             -ccCCCCCCCEEEcccccccc
Q 042603          200 -PLMHLTSIEELILSNNHFQI  219 (874)
Q Consensus       200 -~l~~l~~L~~L~l~~n~~~~  219 (874)
                       .=..+|-|..|.+.+|++..
T Consensus       297 ~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         297 FEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhhcccHHHHHHHHccCcchh
Confidence             11346778888888888763

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.75  E-value=1.8e-06  Score=88.30  Aligned_cols=111  Identities=21%  Similarity=0.159  Sum_probs=63.2

Q ss_pred             CCCCEEEccCCcccccccCc-cccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEcccc-CCCCCccccccccCC
Q 042603           30 SSLKYLSMRGCVLKGALHGQ-DFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYS-RLNKNTILDQGLCEL  107 (874)
Q Consensus        30 ~~L~~L~Ls~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~~~~~~~~~~~l~~l  107 (874)
                      ..||.|.++||.=.+.-+.. .-.+++++++|.+.+|. .+....+..+.+.+++|++|++..| .++.. .+..-...+
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-~Lk~la~gC  215 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSITDV-SLKYLAEGC  215 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhHHH-HHHHHHHhh
Confidence            36788888888533332222 22467888888887776 3444445556677888888888774 33332 122233457


Q ss_pred             CCCcEEEcCCCC-CCCc-chhcccCCCCCCEEEccCC
Q 042603          108 VHLQELYIRDND-LRDS-LLWCLANMTSLQVLNVASN  142 (874)
Q Consensus       108 ~~L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~Ls~n  142 (874)
                      ++|++|++++|. |++- +..-..+++.++.+.+.+|
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC  252 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC  252 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence            777777777764 2221 1112344555555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.69  E-value=9.7e-05  Score=78.07  Aligned_cols=73  Identities=14%  Similarity=0.148  Sum_probs=43.4

Q ss_pred             CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCc-cCcccCCccccCCCCCCEE
Q 042603          519 LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANN-YIEGEIPVQLCQLKEVRLI  597 (874)
Q Consensus       519 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L  597 (874)
                      +..++.|++++|.++.++    .-.++|++|+++++.--..+|+.+  .++|+.|.+++| .+. .+|.      +|+.|
T Consensus        51 ~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L  117 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL  117 (426)
T ss_pred             hcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence            466778888877776653    112357778877644333556544  256777777777 333 3332      45666


Q ss_pred             EccCCcC
Q 042603          598 DLSHNNL  604 (874)
Q Consensus       598 ~Ls~N~l  604 (874)
                      +++.+..
T Consensus       118 ~L~~n~~  124 (426)
T PRK15386        118 EIKGSAT  124 (426)
T ss_pred             EeCCCCC
Confidence            6665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.68  E-value=5e-06  Score=85.15  Aligned_cols=208  Identities=19%  Similarity=0.132  Sum_probs=113.9

Q ss_pred             CCCEEecCCCCC-CCCchhhhccCCCCCCEEEccCCcccccccCccc-cCCCCCcEEECCCccccccchhHHHHHhcCCC
Q 042603            6 NLEELILVESDL-HVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDF-HEFKNLEHLVMDRMLVEVDTSFLQIVSESMAS   83 (874)
Q Consensus         6 ~L~~L~Ls~~~~-~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~   83 (874)
                      .|+.|.+.++.- ....+-.+..++|++++|++.+|....+..-..+ ..+++|++|++..|.. +....+......+++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~-iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS-ITDVSLKYLAEGCRK  217 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch-hHHHHHHHHHHhhhh
Confidence            467788888854 2345556677889999999988853322221223 3688899998888643 223334445678899


Q ss_pred             CCEEEccccC-CCCCccccccccCCCCCcEEEcCCCCCCCcchhcc----cCCCCCCEEEccCCc-CCCCCcccc-cCCC
Q 042603           84 LRILSLSYSR-LNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCL----ANMTSLQVLNVASNQ-LTGNFPPGF-CELV  156 (874)
Q Consensus        84 L~~L~Ls~n~-~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~  156 (874)
                      |++++++-+. +++.. +..-+.+++.++.+.+++|.=  ....++    +.+..+.++++..+. ++...-..+ ..+.
T Consensus       218 L~~lNlSwc~qi~~~g-v~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNG-VQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             HHHhhhccCchhhcCc-chHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            9999988774 33322 223455666677776666531  111111    334455666655553 222111111 2356


Q ss_pred             CCCEEEccCCcCCCC-cc-ccccCCCCCCEEEcccccccccCCcccc-CCCCCCCEEEcccccc
Q 042603          157 LLRELYIDNNDLRGS-LP-LCLANLTSLRVLDVSYNQLTENISSSPL-MHLTSIEELILSNNHF  217 (874)
Q Consensus       157 ~L~~L~Ls~n~l~~~-~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~l~~n~~  217 (874)
                      .|+.|+.+++.-.+. .- ..-.+..+|++|-++.++--+..-...+ .+.+.|+.+++..+..
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL  358 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence            677777766543211 11 1223556777777776652221221122 3456666666666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.61  E-value=0.00018  Score=65.09  Aligned_cols=110  Identities=17%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             CCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhcc
Q 042603          294 FPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA  373 (874)
Q Consensus       294 ~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~  373 (874)
                      ++...+..+++|+.+.+.. .+..+....|..+++|+.+.+..+ +. .++...+..+++++.+.+.+ .+.......|.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence            3444455666666666653 455555556666666666666654 33 55555565555666666654 33334445566


Q ss_pred             CCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEccc
Q 042603          374 DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN  410 (874)
Q Consensus       374 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~  410 (874)
                      .+++|+.+++..+ +. .++...+.++ .++.+.+..
T Consensus        79 ~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            6666666666544 33 4444444444 555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.52  E-value=0.0002  Score=66.45  Aligned_cols=104  Identities=23%  Similarity=0.313  Sum_probs=67.9

Q ss_pred             CCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCC-chhhcCCCCCcEEEcc
Q 042603          498 CLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI-PNWIDKLPQLSYILLA  576 (874)
Q Consensus       498 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~  576 (874)
                      +...+||++|.+. ..+.+..++.|..|.+.+|+|+.+.|..-..+++|..|.|.+|.|.... -..+..+|.|++|.+-
T Consensus        43 ~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            4556677777664 4444455667777777777777777766666777777777777765321 1235667788888888


Q ss_pred             CccCcccC---CccccCCCCCCEEEccCC
Q 042603          577 NNYIEGEI---PVQLCQLKEVRLIDLSHN  602 (874)
Q Consensus       577 ~n~~~~~~---~~~~~~l~~L~~L~Ls~N  602 (874)
                      +|++...-   .-.+..+++|+.||.+.=
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhh
Confidence            88775321   123667888888887654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.46  E-value=0.00028  Score=63.84  Aligned_cols=101  Identities=25%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             CCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeE
Q 042603          351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRL  430 (874)
Q Consensus       351 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  430 (874)
                      .++|+.+.+.. .+.......|.++++|+.+.+.++ +. .++...+.++++++.+.+.+ .+.......|..+++++.+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            33444444432 233333334444444444444442 32 33444444444444444432 2222223333344444444


Q ss_pred             EccCCcCcccCCccccccCCCCeEEcc
Q 042603          431 QLDGNKFIGEIPESLSKCYLLGGLYLS  457 (874)
Q Consensus       431 ~L~~n~l~~~~~~~~~~~~~L~~L~l~  457 (874)
                      ++..+ +.......|.++ .++.+.+.
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            44332 222223334443 44444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.44  E-value=0.00028  Score=65.49  Aligned_cols=82  Identities=26%  Similarity=0.224  Sum_probs=34.9

Q ss_pred             CCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCc-cccccCCCCCCEEEc
Q 042603          109 HLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL-PLCLANLTSLRVLDV  187 (874)
Q Consensus       109 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L  187 (874)
                      ....+|+++|.+...  ..|.+++.|..|.+++|.|+.+.|.--.-+++|..|.|.+|+|.... -.-+..|++|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            344455555554321  22444445555555555555333332222344555555555443210 112334444444444


Q ss_pred             ccccc
Q 042603          188 SYNQL  192 (874)
Q Consensus       188 ~~n~l  192 (874)
                      -+|..
T Consensus       121 l~Npv  125 (233)
T KOG1644|consen  121 LGNPV  125 (233)
T ss_pred             cCCch
Confidence            44443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.26  E-value=0.0009  Score=70.93  Aligned_cols=54  Identities=11%  Similarity=0.078  Sum_probs=28.7

Q ss_pred             CCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCC
Q 042603          400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN  459 (874)
Q Consensus       400 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  459 (874)
                      +.+++.|++++|.++.. |.   -.++|++|.+++|.-...+|..+  ..+|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            56677777777766543 21   12346666666644333444333  235556666555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.55  E-value=0.0011  Score=64.60  Aligned_cols=103  Identities=19%  Similarity=0.191  Sum_probs=45.9

Q ss_pred             CCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCC--cCCCCCcccccCCCCCCEEEccCCcCCCC-ccccccCCCCCCE
Q 042603          108 VHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASN--QLTGNFPPGFCELVLLRELYIDNNDLRGS-LPLCLANLTSLRV  184 (874)
Q Consensus       108 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  184 (874)
                      ..|+.|.+.+..++..  ..+-.+++|++|++|.|  .+.+.++-....+++|++|++++|++... .-..+..+.+|..
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            3444444444443321  12334455555555555  44433333333445555555555555410 0012344455666


Q ss_pred             EEcccccccccCC--ccccCCCCCCCEEEc
Q 042603          185 LDVSYNQLTENIS--SSPLMHLTSIEELIL  212 (874)
Q Consensus       185 L~L~~n~l~~~~~--~~~l~~l~~L~~L~l  212 (874)
                      ||+.+|..++...  ...|.-+++|++|+-
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhccccc
Confidence            6666655443110  113444566666653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.49  E-value=0.00041  Score=79.14  Aligned_cols=63  Identities=29%  Similarity=0.181  Sum_probs=32.5

Q ss_pred             CCCCcEEEccCCc-CCcccchhccC-CCCcCEEEcccCc-CCCCchhHHHhcCCCCCEEEcccCcc
Q 042603          351 LPGLMHLNLSRNA-FNGSIPSSFAD-MKMLKSLDISYNQ-LTGAIPERMAMGCFSLEILALSNNTL  413 (874)
Q Consensus       351 l~~L~~L~l~~n~-i~~~~~~~~~~-l~~L~~L~l~~n~-i~~~~~~~~~~~~~~L~~L~L~~n~l  413 (874)
                      +++|+.|+++++. ++...-..+.. +++|+.|.+.++. +++..-..+...++.|++|+++++..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4566666666655 33222222222 5566666655555 44444444445566666666665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.29  E-value=0.0029  Score=61.66  Aligned_cols=110  Identities=19%  Similarity=0.179  Sum_probs=77.6

Q ss_pred             CCCCCCEEecCCCCCCCCchhhhccCCCCCCEEEccCC--cccccccCccccCCCCCcEEECCCccccccchhHHHHHhc
Q 042603            3 NFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGC--VLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSES   80 (874)
Q Consensus         3 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   80 (874)
                      .+..|+.|++.++.+   .....+-.+++|++|.+|.|  +..+.++. ....+++|++|++++|.+.....+-+  +..
T Consensus        41 ~~~~le~ls~~n~gl---tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~p--l~~  114 (260)
T KOG2739|consen   41 EFVELELLSVINVGL---TTLTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRP--LKE  114 (260)
T ss_pred             cccchhhhhhhccce---eecccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccch--hhh
Confidence            356778888888776   34566778899999999999  55555543 23466999999999999884433222  678


Q ss_pred             CCCCCEEEccccCCCCCccc-cccccCCCCCcEEEcCCC
Q 042603           81 MASLRILSLSYSRLNKNTIL-DQGLCELVHLQELYIRDN  118 (874)
Q Consensus        81 l~~L~~L~Ls~n~~~~~~~~-~~~l~~l~~L~~L~L~~n  118 (874)
                      +++|..|++..|..+...-. ...|.-+++|++|+-...
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            88999999999987652211 124566788888766544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.29  E-value=0.0012  Score=75.30  Aligned_cols=136  Identities=20%  Similarity=0.119  Sum_probs=85.7

Q ss_pred             CCCCCCEEecCCCCCCCC-chhhhccCCCCCCEEEccCC-ccccccc---CccccCCCCCcEEECCCccccccchhHHHH
Q 042603            3 NFTNLEELILVESDLHVS-QLLQSIASFSSLKYLSMRGC-VLKGALH---GQDFHEFKNLEHLVMDRMLVEVDTSFLQIV   77 (874)
Q Consensus         3 ~l~~L~~L~Ls~~~~~~~-~~~~~l~~l~~L~~L~Ls~~-~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~   77 (874)
                      .++.|+.|.++++..... .+......++.|+.|+++++ ......+   ......+++|+.|+++.+... ....+..+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i-sd~~l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV-TDIGLSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc-CchhHHHH
Confidence            357788888888854222 25567778899999999873 2211111   223456788999999888742 22334444


Q ss_pred             HhcCCCCCEEEccccC-CCCCccccccccCCCCCcEEEcCCCCCCCc--chhcccCCCCCCEEEcc
Q 042603           78 SESMASLRILSLSYSR-LNKNTILDQGLCELVHLQELYIRDNDLRDS--LLWCLANMTSLQVLNVA  140 (874)
Q Consensus        78 ~~~l~~L~~L~Ls~n~-~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls  140 (874)
                      ...+++|++|.+..+. ++... +......++.|++|++++|.....  ......++++|+.|.+.
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~g-l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEG-LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             HhhCCCcceEccCCCCccchhH-HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            5568899999987777 45432 334556788899999998875421  22223446666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.00029  Score=68.47  Aligned_cols=65  Identities=32%  Similarity=0.394  Sum_probs=39.7

Q ss_pred             HhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcch-hcccCCCCCCEEEccCCcCCC
Q 042603           78 SESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLL-WCLANMTSLQVLNVASNQLTG  146 (874)
Q Consensus        78 ~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~  146 (874)
                      ..+|+.|++|.||-|.|+..    ..+..|++|++|+|+.|.|.+... .-+.++++|+.|.|..|.-.+
T Consensus        37 c~kMp~lEVLsLSvNkIssL----~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSL----APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             HHhcccceeEEeeccccccc----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence            45677777777777776653    345666777777777776664322 334566666666666655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.00044  Score=67.29  Aligned_cols=84  Identities=23%  Similarity=0.203  Sum_probs=51.1

Q ss_pred             CcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchh-HHHhcCCCCCE
Q 042603          327 QKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE-RMAMGCFSLEI  405 (874)
Q Consensus       327 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~  405 (874)
                      .+.+.|+..+|.+. .  ..+...+|.|+.|.|+-|.|+..-  .|..|++|++|.|..|.|. .+.+ ....++++|+.
T Consensus        19 ~~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            45556666666655 2  234445677777777777776443  3667777777777777776 3333 23345666666


Q ss_pred             EEcccCccccc
Q 042603          406 LALSNNTLQGH  416 (874)
Q Consensus       406 L~L~~n~l~~~  416 (874)
                      |.|..|.-.+.
T Consensus        93 LWL~ENPCc~~  103 (388)
T KOG2123|consen   93 LWLDENPCCGE  103 (388)
T ss_pred             HhhccCCcccc
Confidence            66666655443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.86  E-value=0.0042  Score=35.79  Aligned_cols=19  Identities=58%  Similarity=0.901  Sum_probs=9.5

Q ss_pred             CCeEecCCcccccchhhhcc
Q 042603          696 IRALNLSHNNLTGTIPTTFS  715 (874)
Q Consensus       696 L~~L~Ls~N~l~~~~p~~~~  715 (874)
                      |++|||++|+|+ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 3444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.57  E-value=0.0044  Score=35.74  Aligned_cols=21  Identities=43%  Similarity=0.491  Sum_probs=14.8

Q ss_pred             CCCEEECCCCcCcccCChhhhc
Q 042603          719 QIESLDLSYNLLHGKIPPQLIV  740 (874)
Q Consensus       719 ~L~~LdLs~N~l~~~~p~~l~~  740 (874)
                      +|++|||++|+++ .+|++|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677888888887 66666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.88  E-value=0.0004  Score=76.65  Aligned_cols=88  Identities=35%  Similarity=0.444  Sum_probs=42.8

Q ss_pred             CCCCCEEEccCCcCCCC----CcccccCCCC-CCEEEccCCcCCCC----ccccccCC-CCCCEEEcccccccccCCc--
Q 042603          131 MTSLQVLNVASNQLTGN----FPPGFCELVL-LRELYIDNNDLRGS----LPLCLANL-TSLRVLDVSYNQLTENISS--  198 (874)
Q Consensus       131 l~~L~~L~Ls~n~i~~~----~~~~~~~l~~-L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~--  198 (874)
                      ..++++|.+++|.++..    ....+...+. +..|++..|.+...    ....+..+ ..+++++++.|.++..-..  
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            44555555555554421    0112233333 44466666655422    22233344 5566777777766542111  


Q ss_pred             -cccCCCCCCCEEEccccccc
Q 042603          199 -SPLMHLTSIEELILSNNHFQ  218 (874)
Q Consensus       199 -~~l~~l~~L~~L~l~~n~~~  218 (874)
                       ..+..++.++++.++.|.+.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccc
Confidence             13344556777777776654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.73  E-value=0.0037  Score=69.11  Aligned_cols=188  Identities=27%  Similarity=0.255  Sum_probs=135.4

Q ss_pred             CCEEecCCCCCC---CCchhhhccCCCCCCEEEccCCccccccc---CccccCC-CCCcEEECCCcccc-ccchhHHHHH
Q 042603            7 LEELILVESDLH---VSQLLQSIASFSSLKYLSMRGCVLKGALH---GQDFHEF-KNLEHLVMDRMLVE-VDTSFLQIVS   78 (874)
Q Consensus         7 L~~L~Ls~~~~~---~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l-~~L~~L~l~~~~~~-~~~~~~~~~~   78 (874)
                      +.+|.|.+|.+.   ...+.+.+...+.|..|++++|.+.+.-.   ...+... ..+++|.+..|.+. .....+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            677888888875   23456788889999999999999874422   1222332 55778888888877 4455566667


Q ss_pred             hcCCCCCEEEccccCCCCCc--ccccccc----CCCCCcEEEcCCCCCCCcch----hcccCCCC-CCEEEccCCcCCCC
Q 042603           79 ESMASLRILSLSYSRLNKNT--ILDQGLC----ELVHLQELYIRDNDLRDSLL----WCLANMTS-LQVLNVASNQLTGN  147 (874)
Q Consensus        79 ~~l~~L~~L~Ls~n~~~~~~--~~~~~l~----~l~~L~~L~L~~n~i~~~~~----~~~~~l~~-L~~L~Ls~n~i~~~  147 (874)
                      .....+++++++.|.+....  .++..+.    ...++++|++++|.++....    ..+...+. +..|++.+|.+...
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            77999999999999885322  2233333    57889999999999875322    34555566 77899999987743


Q ss_pred             ----CcccccCC-CCCCEEEccCCcCCCC----ccccccCCCCCCEEEcccccccc
Q 042603          148 ----FPPGFCEL-VLLRELYIDNNDLRGS----LPLCLANLTSLRVLDVSYNQLTE  194 (874)
Q Consensus       148 ----~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~  194 (874)
                          ..+.+..+ ..+++++++.|.++..    +...+..++.++.+.++.|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                23345555 6789999999999854    34556678899999999998864

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.15  E-value=0.16  Score=30.57  Aligned_cols=15  Identities=40%  Similarity=0.678  Sum_probs=7.1

Q ss_pred             cCCeEecCCcccccc
Q 042603          695 RIRALNLSHNNLTGT  709 (874)
Q Consensus       695 ~L~~L~Ls~N~l~~~  709 (874)
                      +|+.|+|++|+|+.+
T Consensus         3 ~L~~L~L~~N~l~~l   17 (26)
T smart00369        3 NLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCEEECCCCcCCcC
Confidence            444455555554433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.15  E-value=0.16  Score=30.57  Aligned_cols=15  Identities=40%  Similarity=0.678  Sum_probs=7.1

Q ss_pred             cCCeEecCCcccccc
Q 042603          695 RIRALNLSHNNLTGT  709 (874)
Q Consensus       695 ~L~~L~Ls~N~l~~~  709 (874)
                      +|+.|+|++|+|+.+
T Consensus         3 ~L~~L~L~~N~l~~l   17 (26)
T smart00370        3 NLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCEEECCCCcCCcC
Confidence            444455555554433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.85  E-value=0.13  Score=27.35  Aligned_cols=11  Identities=55%  Similarity=0.902  Sum_probs=3.3

Q ss_pred             CCeEecCCccc
Q 042603          696 IRALNLSHNNL  706 (874)
Q Consensus       696 L~~L~Ls~N~l  706 (874)
                      |+.|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.99  E-value=0.011  Score=56.24  Aligned_cols=81  Identities=19%  Similarity=0.207  Sum_probs=54.6

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      ..+.||++.|++. -.-..|.-++.|..||+|.|++. ..|..++++..+..+++.+|..+ ..|-++..++.+++++..
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            4556777777765 34455666677777777777776 66677777777777777777666 456666777777776666


Q ss_pred             CCCC
Q 042603          751 YNNL  754 (874)
Q Consensus       751 ~N~l  754 (874)
                      .|.+
T Consensus       120 ~~~~  123 (326)
T KOG0473|consen  120 KTEF  123 (326)
T ss_pred             cCcc
Confidence            6664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.31  E-value=0.016  Score=55.17  Aligned_cols=88  Identities=24%  Similarity=0.294  Sum_probs=54.7

Q ss_pred             ccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCC
Q 042603          688 TQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFST  767 (874)
Q Consensus       688 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~  767 (874)
                      ..+......+.||++.|++. -.-..|+-++.|..||+|.|.+. ..|..+..+..+..++...|+++.. |-++++.+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhC-CccccccCC
Confidence            34555566677777777766 33445566666777777777765 4566666666666666666666644 333566666


Q ss_pred             CCcccccCCCC
Q 042603          768 FEEDSYEGNPF  778 (874)
Q Consensus       768 l~~~~~~gNp~  778 (874)
                      .+..+.-+||+
T Consensus       113 ~k~~e~k~~~~  123 (326)
T KOG0473|consen  113 PKKNEQKKTEF  123 (326)
T ss_pred             cchhhhccCcc
Confidence            66666666653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.27  E-value=0.33  Score=29.21  Aligned_cols=19  Identities=42%  Similarity=0.532  Sum_probs=12.5

Q ss_pred             CCCCCEEECCCCcCcccCC
Q 042603          717 LKQIESLDLSYNLLHGKIP  735 (874)
Q Consensus       717 l~~L~~LdLs~N~l~~~~p  735 (874)
                      +++|++|+|++|+|+...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            4567777777777774433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.27  E-value=0.33  Score=29.21  Aligned_cols=19  Identities=42%  Similarity=0.532  Sum_probs=12.5

Q ss_pred             CCCCCEEECCCCcCcccCC
Q 042603          717 LKQIESLDLSYNLLHGKIP  735 (874)
Q Consensus       717 l~~L~~LdLs~N~l~~~~p  735 (874)
                      +++|++|+|++|+|+...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            4567777777777774433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.09  E-value=0.23  Score=29.20  Aligned_cols=15  Identities=33%  Similarity=0.612  Sum_probs=5.9

Q ss_pred             cCCeEecCCcccccc
Q 042603          695 RIRALNLSHNNLTGT  709 (874)
Q Consensus       695 ~L~~L~Ls~N~l~~~  709 (874)
                      +|+.|+|++|+|++.
T Consensus         3 ~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    3 NLETLDLSNNQITDE   17 (24)
T ss_dssp             T-SEEE-TSSBEHHH
T ss_pred             CCCEEEccCCcCCHH
Confidence            444444444444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.30  E-value=0.2  Score=29.51  Aligned_cols=21  Identities=33%  Similarity=0.438  Sum_probs=13.0

Q ss_pred             CCCCEEECCCCcCcccCChhh
Q 042603          718 KQIESLDLSYNLLHGKIPPQL  738 (874)
Q Consensus       718 ~~L~~LdLs~N~l~~~~p~~l  738 (874)
                      ++|++|||++|+|++.....+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            578888888888876544433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.31  E-value=0.3  Score=46.09  Aligned_cols=85  Identities=18%  Similarity=0.167  Sum_probs=56.1

Q ss_pred             CCCEEecCCCCCCCCchhhhccCCCCCCEEEccCCcccccccCcccc-CCCCCcEEECCCccccccchhHHHHHhcCCCC
Q 042603            6 NLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFH-EFKNLEHLVMDRMLVEVDTSFLQIVSESMASL   84 (874)
Q Consensus         6 ~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L   84 (874)
                      .++.+|-+++.+ ...-.+-+.+++.++.|.+.+|.--+.--..-++ -.++|+.|++++|.--.....  ..+.++++|
T Consensus       102 ~IeaVDAsds~I-~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL--~~L~~lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDSSI-MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL--ACLLKLKNL  178 (221)
T ss_pred             eEEEEecCCchH-HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH--HHHHHhhhh
Confidence            357788888887 5666788888899999999888533221111111 357899999998865332221  236778888


Q ss_pred             CEEEccccC
Q 042603           85 RILSLSYSR   93 (874)
Q Consensus        85 ~~L~Ls~n~   93 (874)
                      +.|.+.+-.
T Consensus       179 r~L~l~~l~  187 (221)
T KOG3864|consen  179 RRLHLYDLP  187 (221)
T ss_pred             HHHHhcCch
Confidence            888876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	874
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-54
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-08
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-53
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-14
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		4e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		6e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		7e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		8e-05
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		3e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		7e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  208 bits (530), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 211/695 (30%), Positives = 307/695 (44%), Gaps = 96/695 (13%)
Query: 151 GFCELVLLRELYIDNNDLRGSLPL--CLANLTSLRVLDVSYNQLTENISSSPLMHLTSIE 208
           GF     L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E
Sbjct: 92  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 151
Query: 209 ELILSNNHFQIP-----ISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSG 263
            L LS N          +  +    L  L     +I  + +    S     +   +S + 
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNN 208
Query: 264 YGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPI 323
           +  G   P FL     L + D+S   LSG+F   +    T+LK L +++N   G   +P 
Sbjct: 209 FSTG--IP-FLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGP--IPP 262
Query: 324 HCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA---------- 373
             L+ L  L ++ N F G IP  +      L  L+LS N F G++P  F           
Sbjct: 263 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 374 ---------------DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF 418
                           M+ LK LD+S+N+ +G +PE +     SL  L LS+N   G I 
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 419 SE--KFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQ 476
               +     L+ L L  N F G+IP +LS C  L  L+LS N+LSG IP  LGSL  L+
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 477 DIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL 536
           D+ +  N LEG IP E   +  L+ L L  N + G +PS LS                  
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS------------------ 484
Query: 537 ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRL 596
                    L  + LS NRL G IP WI +L  L+ + L+NN   G IP +L   + +  
Sbjct: 485 -----NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 597 IDLSHNNLSGHIPPCL--------VNTALSEGYY----DAVAPTWDHASAPALSYFPPNG 644
           +DL+ N  +G IP  +         N    + Y     D +     H +   L +     
Sbjct: 540 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEF----- 593
Query: 645 SPMGKEETVQFTTKN----MSYYYRGRIL------TSMSGIDLSCNKLTGEIPTQIGYLT 694
             +  E+  + +T+N     S  Y G          SM  +D+S N L+G IP +IG + 
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 695 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNL 754
            +  LNL HN+++G+IP    +L+ +  LDLS N L G+IP  +  L  L    ++ NNL
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 755 SGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCD 789
           SG IP+ + QF TF    +  NP LCG PL + CD
Sbjct: 714 SGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR-CD 746

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 144/333 (43%), Gaps = 58/333 (17%)
Query: 504 LSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHY-----------------YPYL 546
           LSN+ I G++       S+  + LS+N + G + ++                    +P  
Sbjct: 81  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 547 VT----------LDLSYNRLHGS-IPNWI--DKLPQLSYILLANNYIEGEIPVQLCQLKE 593
           V+          LDLS N + G+ +  W+  D   +L ++ ++ N I G++ V  C    
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--N 198
Query: 594 VRLIDLSHNNLSGHIP---PC-------LVNTALSEGYYDAVAPTWDH-----ASAPALS 638
           +  +D+S NN S  IP    C       +    LS  +  A++   +      +S   + 
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 639 YFPPNGSPMGKEETVQFT----TKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLT 694
             PP   P+   + +       T  +  +  G   T ++G+DLS N   G +P   G  +
Sbjct: 259 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCS 315
Query: 695 RIRALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPPQLIVLN-TLAVFRVAYN 752
            + +L LS NN +G +P  T   ++ ++ LDLS+N   G++P  L  L+ +L    ++ N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 753 NLSGKIPDRVAQ--FSTFEEDSYEGNPFLCGLP 783
           N SG I   + Q   +T +E   + N F   +P
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  207 bits (527), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 211/695 (30%), Positives = 307/695 (44%), Gaps = 96/695 (13%)
Query: 151 GFCELVLLRELYIDNNDLRGSLPL--CLANLTSLRVLDVSYNQLTENISSSPLMHLTSIE 208
           GF     L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E
Sbjct: 95  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 209 ELILSNNHFQIP-----ISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSG 263
            L LS N          +  +    L  L     +I  + +    S     +   +S + 
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNN 211
Query: 264 YGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPI 323
           +  G   P FL     L + D+S   LSG+F   +    T+LK L +++N   G   +P 
Sbjct: 212 FSTG--IP-FLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGP--IPP 265
Query: 324 HCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA---------- 373
             L+ L  L ++ N F G IP  +      L  L+LS N F G++P  F           
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 374 ---------------DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF 418
                           M+ LK LD+S+N+ +G +PE +     SL  L LS+N   G I 
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 419 SE--KFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQ 476
               +     L+ L L  N F G+IP +LS C  L  L+LS N+LSG IP  LGSL  L+
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 477 DIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL 536
           D+ +  N LEG IP E   +  L+ L L  N + G +PS LS                  
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS------------------ 487
Query: 537 ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRL 596
                    L  + LS NRL G IP WI +L  L+ + L+NN   G IP +L   + +  
Sbjct: 488 -----NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 597 IDLSHNNLSGHIPPCL--------VNTALSEGYY----DAVAPTWDHASAPALSYFPPNG 644
           +DL+ N  +G IP  +         N    + Y     D +     H +   L +     
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEF----- 596
Query: 645 SPMGKEETVQFTTKN----MSYYYRGRIL------TSMSGIDLSCNKLTGEIPTQIGYLT 694
             +  E+  + +T+N     S  Y G          SM  +D+S N L+G IP +IG + 
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 695 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNL 754
            +  LNL HN+++G+IP    +L+ +  LDLS N L G+IP  +  L  L    ++ NNL
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 755 SGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCD 789
           SG IP+ + QF TF    +  NP LCG PL + CD
Sbjct: 717 SGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR-CD 749

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 144/333 (43%), Gaps = 58/333 (17%)
Query: 504 LSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHY-----------------YPYL 546
           LSN+ I G++       S+  + LS+N + G + ++                    +P  
Sbjct: 84  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 547 VT----------LDLSYNRLHGS-IPNWI--DKLPQLSYILLANNYIEGEIPVQLCQLKE 593
           V+          LDLS N + G+ +  W+  D   +L ++ ++ N I G++ V  C    
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--N 201
Query: 594 VRLIDLSHNNLSGHIP---PC-------LVNTALSEGYYDAVAPTWD-----HASAPALS 638
           +  +D+S NN S  IP    C       +    LS  +  A++   +      +S   + 
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 639 YFPPNGSPMGKEETVQFT----TKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLT 694
             PP   P+   + +       T  +  +  G   T ++G+DLS N   G +P   G  +
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCS 318
Query: 695 RIRALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPPQLIVLN-TLAVFRVAYN 752
            + +L LS NN +G +P  T   ++ ++ LDLS+N   G++P  L  L+ +L    ++ N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 753 NLSGKIPDRVAQ--FSTFEEDSYEGNPFLCGLP 783
           N SG I   + Q   +T +E   + N F   +P
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 19/231 (8%)
Query: 488 PIPNEFCQLDCLKVLDLSN-NSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPY 545
           PIP+    L  L  L +   N++ G +P  ++ L  +  ++++   + G +   +     
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 546 LVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEV-RLIDLSHNNL 604
           LVTLD SYN L G++P  I  LP L  I    N I G IP       ++   + +S N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 605 SGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQ--FTTKNMSY 662
           +G IPP   N  L+   +  ++       A  L          G ++  Q     KN   
Sbjct: 187 TGKIPPTFANLNLA---FVDLSRNMLEGDASVL---------FGSDKNTQKIHLAKNSLA 234
Query: 663 YYRGRILTS--MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP 711
           +  G++  S  ++G+DL  N++ G +P  +  L  + +LN+S NNL G IP
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 115/258 (44%), Gaps = 25/258 (9%)
Query: 536 LESIIHYYPYLVTLDLS-YNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEV 594
           + S +   PYL  L +   N L G IP  I KL QL Y+ + +  + G IP  L Q+K +
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 595 RLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQ 654
             +D S+N LSG +PP +          + V  T+D          P +     K  T  
Sbjct: 128 VTLDFSYNALSGTLPPSI------SSLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSM 179
Query: 655 FTTKNMSYYYRGRILTSMSG-----IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT-- 707
             ++N      G+I  + +      +DLS N L G+     G     + ++L+ N+L   
Sbjct: 180 TISRNR---LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 708 -GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFS 766
            G +  +    K +  LDL  N ++G +P  L  L  L    V++NNL G+IP +     
Sbjct: 237 LGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQ 291
Query: 767 TFEEDSYEGNPFLCGLPL 784
            F+  +Y  N  LCG PL
Sbjct: 292 RFDVSAYANNKCLCGSPL 309

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 5/148 (3%)
Query: 106 ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYID 164
            L  L+ LY+ DN L+         + +L+ L V  N+L    P G F +LV L EL +D
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLD 117
Query: 165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ-IPI-S 222
            N L+   P    +LT L  L + YN+L +++       LTS++EL L NN  + +P  +
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 223 LEPLFNLSKLKTFNGEIYAETESHYNSL 250
            + L  L  LK  N ++    E  ++SL
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSL 204

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 283 ADLSHLNLSGEFPNWLPENN----TDLKTLLLANNSL----FGSFRMPIHCLQKLATLDV 334
           AD   L+L     + LP       T L+ L L +N L     G F+     L+ L TL V
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE----LKNLETLWV 92
Query: 335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE 394
           ++N  L  +P+ +   L  L  L L RN      P  F  +  L  L + YN+L  ++P+
Sbjct: 93  TDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150
Query: 395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE 443
            +     SL+ L L NN L+         LT LK L+LD N+ +  +PE
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPE 198

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 33/179 (18%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
           L +L EL +  N L+D  +  LA++T+L  L++A+NQ++ N  P    L  L EL +  N
Sbjct: 215 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN 270
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTE------------------NISS-SPLMHLTSI 207
            +    PL  A LT+L  L+++ NQL +                  NIS  SP+  LT +
Sbjct: 271 QISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 328
Query: 208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD 266
           + L  SNN      SL  L N++ L   + +I        + LTP   LT I+  G  D
Sbjct: 329 QRLFFSNNKVSDVSSLANLTNINWLSAGHNQI--------SDLTPLANLTRITQLGLND 379

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSYN 190
           T+ Q+L +  NQ+T   P  F  L+ L+ELY+ +N L G+LP+    +LT L VLD+  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 191 QLTENISSSPLMHLTSIEELILSNNHF-QIPISLEPLFNLSKLKTFNGEIYAETESHYNS 249
           QLT  + S+    L  ++EL +  N   ++P  +E L +L+ L     ++ +     ++ 
Sbjct: 99  QLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 250 LT 251
           L+
Sbjct: 158 LS 159

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 158/436 (36%), Gaps = 65/436 (14%)
Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
           L HIP ++ +    +  LNL+ N      P++F     L  LD  +N ++   PE   + 
Sbjct: 16  LTHIPDDLPS---NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQIL 72
Query: 400 CFSLEILALSNNTLQGHIFSEKFNL-TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 458
              L++L L +N L   I  + F   TNL  L L  N               L  L LS 
Sbjct: 73  PL-LKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSH 130
Query: 459 NHLSG-KIPRWLGSLLALQDIIMPNNNLEGPIPN-EFCQLDCLKVLDLSNNSIFGTLPSC 516
           N LS  K+   +      + ++  N  L       EF     L+ LDLS+N +    P C
Sbjct: 131 NGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGC 190
Query: 517 ----------------------------LSLGSIEQVHLSKNKIEGQLESIIH--YYPYL 546
                                       LS  SI+ + L+ N++    ES      +  L
Sbjct: 191 FQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNL 250
Query: 547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606
             LDLSYN LH         LP L Y+ L  N I+   P     L  +R + L       
Sbjct: 251 TQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR----- 305
Query: 607 HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFP-----PNGSPMGKEETVQFTTKNMS 661
                       +    A  P  D  S   L Y        N  P  K  T    T  +S
Sbjct: 306 --------AFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTF---TGLVS 354
Query: 662 YYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE 721
             Y      S+S    S   LT E    + + + +  LNL+ N+++     TFS L Q+ 
Sbjct: 355 LKY-----LSLSKTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGTFSWLGQLR 408
Query: 722 SLDLSYNLLHGKIPPQ 737
            LDL  N +  K+  Q
Sbjct: 409 ILDLGLNEIEQKLSGQ 424

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 33/179 (18%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
           L +L EL +  N L+D  +  LA++T+L  L++A+NQ++ N  P    L  L EL +  N
Sbjct: 219 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN 274
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTE------------------NISS-SPLMHLTSI 207
            +    PL  A LT+L  L+++ NQL +                  NIS  SP+  LT +
Sbjct: 275 QISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 332
Query: 208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD 266
           + L  +NN      SL  L N++ L   + +I        + LTP   LT I+  G  D
Sbjct: 333 QRLFFANNKVSDVSSLANLTNINWLSAGHNQI--------SDLTPLANLTRITQLGLND 383

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 184/480 (38%), Gaps = 80/480 (16%)
Query: 351 LPGLMHLNLSRNAFNG-SIPSSFADMKMLKSLDISYNQLTGAIPERMA-MGCFSLEILAL 408
           L  L  L+LS+N      +  SF  +  LKS+D S NQ+       +  +   +L   +L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181
Query: 409 SNNTLQGHIFSEKFNLTN------LKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462
           + N+L   +  +     N      L+ L + GN +  +I                  + S
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT----------------GNFS 225
Query: 463 GKIPRWLGSLLALQDIIMPN----NNLEGPIPNEFCQL--DCLKVLDLSNNSIFGTLPSC 516
             I +     L L   IM      +N++ P  N F  L    ++ LDLS+  +F      
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285
Query: 517 L-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL 575
             +L  ++ ++L+ NKI    +   +    L  L+LSYN L     +    LP+++YI L
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG-HIPPCLVN----------------TA-- 616
             N+I          L++++ +DL  N L+  H  P + +                TA  
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 617 --LSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSG 674
             LSE   + +   +     P L     N +        Q  ++N           S+  
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN----------PSLEQ 455
Query: 675 IDLSCNKLTGEIPTQIGY-----LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 729
           + L  N L     T++ +     L+ ++ L L+HN L    P  FS+L  +  L L+ N 
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
Query: 730 L----HGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 785
           L    H  +P  L +L+      ++ N L    PD     S  +      N F+C   LS
Sbjct: 516 LTVLSHNDLPANLEILD------ISRNQLLAPNPDVFVSLSVLD---ITHNKFICECELS 566

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
           L +L EL +  N L+D  +  LA++T+L  L++A+NQ++ N  P    L  L EL +  N
Sbjct: 215 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN 270
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTE------------------NISS-SPLMHLTSI 207
            +    PL  A LT+L  L+++ NQL +                  NIS  SP+  LT +
Sbjct: 271 QISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 328
Query: 208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD 266
           + L   NN      SL  L N++ L   + +I        + LTP   LT I+  G  D
Sbjct: 329 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQI--------SDLTPLANLTRITQLGLND 379

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 10/72 (13%)
Query: 122 DSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTS 181
           D  LW   ++++LQ+ N+++N    +F         L  LY++ N L   LP  + NL++
Sbjct: 222 DDQLWHALDLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSN 271
Query: 182 LRVLDVSYNQLT 193
           LRVLD+S+N+LT
Sbjct: 272 LRVLDLSHNRLT 283

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
           L +L EL +  N L+D  +  LA++T+L  L++A+NQ++ N  P    L  L EL +  N
Sbjct: 220 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN 275
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTE------------------NISS-SPLMHLTSI 207
            +    PL  A LT+L  L+++ NQL +                  NIS  SP+  LT +
Sbjct: 276 QISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 333
Query: 208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD 266
           + L   NN      SL  L N++ L   + +I        + LTP   LT I+  G  D
Sbjct: 334 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQI--------SDLTPLANLTRITQLGLND 384

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
           L +L EL +  N L+D  +  LA++T+L  L++A+NQ++ N  P    L  L EL +  N
Sbjct: 216 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN 271
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTE------------------NISS-SPLMHLTSI 207
            +    PL  A LT+L  L+++ NQL +                  NIS  SP+  LT +
Sbjct: 272 QISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 329
Query: 208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD 266
           + L   NN      SL  L N++ L   + +I        + LTP   LT I+  G  D
Sbjct: 330 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQI--------SDLTPLANLTRITQLGLND 380

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 95  NKNTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFC 153
           N N I D   L  L +L  L + +N + D  +  L N+T+L  L ++SN ++        
Sbjct: 93  NNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALS 148
Query: 154 ELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILS 213
            L  L++L   +N +    PL  ANLT+L  LD+S N++++    S L  LT++E LI +
Sbjct: 149 GLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIAT 203
Query: 214 NNHFQIPISLEPLFNLSKLKTFNG 237
           NN       L  L NL +L + NG
Sbjct: 204 NNQISDITPLGILTNLDEL-SLNG 226

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 95  NKNTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFC 153
           N N I D   L  L +L  L + +N + D  +  L N+T+L  L ++SN ++        
Sbjct: 93  NNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALS 148
Query: 154 ELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILS 213
            L  L++L   +N +    PL  ANLT+L  LD+S N++++    S L  LT++E LI +
Sbjct: 149 GLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIAT 203
Query: 214 NNHFQIPISLEPLFNLSKLKTFNG 237
           NN       L  L NL +L + NG
Sbjct: 204 NNQISDITPLGILTNLDEL-SLNG 226

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	874
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-177
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-73
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  530 bits (1368), Expect = e-177
 Identities = 202/721 (28%), Positives = 314/721 (43%), Gaps = 47/721 (6%)

Query: 105 CELVHLQELYIRDNDLRD---SLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLREL 161
           C    +  + +    L     ++   L ++T L+ L ++++ + G+    F     L  L
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105

Query: 162 YIDNNDLRGSLP--LCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF-- 217
            +  N L G +     L + + L+ L+VS N L      S  + L S+E L LS N    
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKF------QLTSISLSGYGDGGTFP 271
              +         +LK              N ++          L  + +S        P
Sbjct: 166 ANVVGWVLSDGCGELKHLA--------ISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 217

Query: 272 KFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLAT 331
            FL     L + D+S   LSG+F   +    T+LK L +++N   G    P   L+ L  
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPI--PPLPLKSLQY 273

Query: 332 LDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGA 391
           L ++ N F G IP  +      L  L+LS N F G++P  F    +L+SL +S N  +G 
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 392 IPERMAMGCFSLEILALSNNTLQGHIFSEKFNLT-NLKRLQLDGNKFIGEIPESLSKCYL 450
           +P    +    L++L LS N   G +     NL+ +L  L L  N F G I  +L +   
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

Query: 451 --LGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNS 508
             L  LYL +N  +GKIP  L +   L  + +  N L G IP+    L  L+ L L  N 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 509 IFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKL 567
           + G +P  L  + ++E + L  N + G++ S +     L  + LS NRL G IP WI +L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 568 PQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTAL------SEGY 621
             L+ + L+NN   G IP +L   + +  +DL+ N  +G IP  +   +         G 
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573

Query: 622 YDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNM----SYYYRGRI------LTS 671
                           +        +  E+  + +T+N     S  Y G          S
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 672 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731
           M  +D+S N L+G IP +IG +  +  LNL HN+++G+IP    +L+ +  LDLS N L 
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 732 GKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDN 791
           G+IP  +  L  L    ++ NNLSG IP+   QF TF    +  NP LCG PL +    N
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDPSN 752

Query: 792 G 792
            
Sbjct: 753 A 753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  291 bits (746), Expect = 3e-87
 Identities = 135/722 (18%), Positives = 245/722 (33%), Gaps = 110/722 (15%)

Query: 83  SLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASN 142
           ++ +L+L++++L    +          L  L +  N +          +  L+VLN+  N
Sbjct: 26  NITVLNLTHNQLR--RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 143 QLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLM 202
           +L+      F     L EL++ +N ++           +L  LD+S+N L+        +
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQV 142

Query: 203 HLTSIEELILSNNHFQ-IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISL 261
            L +++EL+LSNN  Q +      +F  S LK              N +           
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL--------SSNQIK---------- 184

Query: 262 SGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPE--NNTDLKTLLLANNSLFGSF 319
                    P   +    L    L+++ L       L     NT ++ L L+N+ L  + 
Sbjct: 185 ------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 320 RMPIHCLQ--KLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKM 377
                 L+   L  LD+S N            +LP L +  L  N        S   +  
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 378 LKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKF 437
           ++ L++  +                    ++S  +L          L  L+ L ++ N  
Sbjct: 298 VRYLNLKRS----------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 438 IGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLG----SLLALQDIIMPNNNLEGPIPNEF 493
            G      +    L  L LS++  S +          +   L  + +  N +     + F
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 494 CQLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDL 551
             L  L+VLDL  N I   L       L +I +++LS NK      +     P L  L L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 552 SYNRLHG--SIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609
               L    S P+    L  L+ + L+NN I       L  L+++ ++DL HNNL+    
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA---- 517

Query: 610 PCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRIL 669
                                            + +P G    ++              L
Sbjct: 518 -----------------------------RLWKHANPGGPIYFLK-------------GL 535

Query: 670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 729
           + +  ++L  N            L  ++ ++L  NNL     + F+N   ++SL+L  NL
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 730 LHGKIPPQL-IVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDS-----YEGNPFLCGLP 783
           +              L    + +N       + +A F  +  ++        + +LC  P
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDC-TCESIAWFVNWINETHTNIPELSSHYLCNTP 654

Query: 784 LS 785
             
Sbjct: 655 PH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  263 bits (675), Expect = 4e-77
 Identities = 131/723 (18%), Positives = 227/723 (31%), Gaps = 123/723 (17%)

Query: 83  SLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASN 142
           S  +   S+ +L   T +   L    ++  L +  N LR          + L  L+V  N
Sbjct: 5   SHEVADCSHLKL---TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 143 QLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLM 202
            ++   P    +L +L+ L + +N+L        A  T+L  L +  N + + I ++P +
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFV 118

Query: 203 HLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLS 262
              ++  L LS+N       L     L  L+              N +            
Sbjct: 119 KQKNLITLDLSHNGLSS-TKLGTQVQLENLQELL--------LSNNKIQ----------- 158

Query: 263 GYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMP 322
                            L + +L     S             LK L L++N +       
Sbjct: 159 ----------------ALKSEELDIFANSS------------LKKLELSSNQIKEFSPGC 190

Query: 323 IHCLQKLATLDVSNNFFLGHIPVEIGTYLPG--LMHLNLSRNAFNGSIPSSFADMKM--L 378
            H + +L  L ++N      +  ++   L    + +L+LS +  + +  ++F  +K   L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFI 438
             LD+SYN L     +  A     LE   L  N +Q         L N++ L L  +   
Sbjct: 251 TMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS--- 306

Query: 439 GEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC 498
                            +S   L          L  L+ + M +N++ G   N F  L  
Sbjct: 307 ------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354

Query: 499 LKVLDLSNNSIFGT-----LPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553
           LK L LSN+              L+   +  ++L+KNKI         +  +L  LDL  
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 554 NRLHGSIPNW-IDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG--HIPP 610
           N +   +       L  +  I L+ N            +  ++ + L    L      P 
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 611 CLVN-TALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRIL 669
                  L          T    S   ++    +                         L
Sbjct: 475 PFQPLRNL----------TILDLSNNNIANINDD----------MLEG-----------L 503

Query: 670 TSMSGIDLSCNKLT--------GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE 721
             +  +DL  N L         G     +  L+ +  LNL  N         F +L +++
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 722 SLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVA-QFSTFEEDSYEGNPFLC 780
            +DL  N L+           +L    +  N ++          F    E     NPF C
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

Query: 781 GLP 783
              
Sbjct: 624 TCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  255 bits (654), Expect = 3e-74
 Identities = 114/636 (17%), Positives = 219/636 (34%), Gaps = 69/636 (10%)

Query: 4   FTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMD 63
            TN+  L L  + L       +   +S L  L +    +   L  +   +   L+ L + 
Sbjct: 24  PTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQ 81

Query: 64  R-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRD 122
              L ++             +L  L L  + +    I +    +  +L  L +  N L  
Sbjct: 82  HNELSQLSDKTFA----FCTNLTELHLMSNSIQ--KIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 123 SLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVL--LRELYIDNNDLRGSLPLCLANLT 180
           + L     + +LQ L +++N++               L++L + +N ++   P C   + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 181 SLRVLDVSYNQLTENISSSPLM--HLTSIEELILSNNHFQ--IPISLEPLFNLSKLKTFN 236
            L  L ++  QL  +++    +    TSI  L LSN+        +   L   + L   +
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL-KWTNLTMLD 254

Query: 237 GEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPN 296
                     YN+L                             L    L + N+   F +
Sbjct: 255 --------LSYNNLN----------------VVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 297 WLPENNTDLKTLLLANNSLFGSFRM---------PIHCLQKLATLDVSNNFFLGHIPVEI 347
            L     +++ L L  +    S  +             L+ L  L++ +N   G I   +
Sbjct: 291 SL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNM 348

Query: 348 GTYLPGLMHLNLSRNAFNGS--IPSSFADMKM--LKSLDISYNQLTGAIPERMAMGCFSL 403
            T L  L +L+LS +  +       +F  +    L  L+++ N+++  I          L
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHL 407

Query: 404 EILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462
           E+L L  N +   +  +++  L N+  + L  NK++     S +    L  L L    L 
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 463 G--KIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI--------FGT 512
                P     L  L  + + NNN+     +    L+ L++LDL +N++         G 
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 513 LPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLS 571
               L  L  +  ++L  N  +     +      L  +DL  N L+    +  +    L 
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 572 YILLANNYIEGEIPVQLC-QLKEVRLIDLSHNNLSG 606
            + L  N I            + +  +D+  N    
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  224 bits (574), Expect = 3e-63
 Identities = 111/589 (18%), Positives = 202/589 (34%), Gaps = 57/589 (9%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
                 L+ L L  ++L      ++ A  ++L  L +    ++  +    F + KNL  L
Sbjct: 69  CQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITL 126

Query: 61  VMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDND 119
            +    L              + +L+ L LS +++      +  +     L++L +  N 
Sbjct: 127 DLSHNGLSSTKLGTQV----QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 120 LRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCE---LVLLRELYIDNNDLRGSLPLCL 176
           +++    C   +  L  L + + QL  +     C       +R L + N+ L  +     
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 177 ANL--TSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ--IPISLEPLFNLSKL 232
             L  T+L +LD+SYN L   + +     L  +E   L  N+ Q     SL  LFN+  L
Sbjct: 243 LGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 233 ------KTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLS 286
                    +  + +  +    S      L  +++      G          +L    LS
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 287 HLNLSGEFPN---WLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHI 343
           +   S        ++   ++ L  L L  N +          L  L  LD+  N     +
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 344 PVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL 403
             +    L  +  + LS N +     +SFA +  L+ L +    L               
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV------------ 469

Query: 404 EILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS- 462
                          S    L NL  L L  N       + L     L  L L  N+L+ 
Sbjct: 470 -----------DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518

Query: 463 -------GKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPS 515
                  G    +L  L  L  + + +N  +      F  L  LK++DL  N++     S
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 516 CLS-LGSIEQVHLSKNKIEGQLESIIHY-YPYLVTLDLSYNRLHGSIPN 562
             +   S++ ++L KN I    + +    +  L  LD+ +N    +  +
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  202 bits (516), Expect = 2e-55
 Identities = 88/472 (18%), Positives = 165/472 (34%), Gaps = 39/472 (8%)

Query: 302 NTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSR 361
               +    ++  L    ++P      +  L++++N                L  L++  
Sbjct: 3   TVSHEVADCSHLKLT---QVPDDLPTNITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGF 58

Query: 362 NAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK 421
           N  +   P     + MLK L++ +N+L+  + ++    C +L  L L +N++Q    +  
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 422 FNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSL--LALQDII 479
               NL  L L  N        +  +   L  L LS+N +       L      +L+ + 
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 480 MPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPS----CLSLGSIEQVHLSKNKIEGQ 535
           + +N ++   P  F  +  L  L L+N  +  +L       L+  SI  + LS +++   
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 536 LESIIH--YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKE 593
             +      +  L  LDLSYN L+    +    LPQL Y  L  N I+      L  L  
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 594 VRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV 653
           VR ++L  +     I    +       +         +     +     N          
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN---------- 347

Query: 654 QFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIG----YLTRIRALNLSHNNLTGT 709
                          L ++  + LS +  +    T         + +  LNL+ N ++  
Sbjct: 348 --MFTG---------LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 710 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPD 760
               FS L  +E LDL  N +  ++  Q    L  +    ++YN       +
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  192 bits (489), Expect = 1e-51
 Identities = 83/448 (18%), Positives = 145/448 (32%), Gaps = 62/448 (13%)

Query: 325 CLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDIS 384
           C       D S+   L  +P ++      +  LNL+ N       ++F     L SLD+ 
Sbjct: 2   CTVSHEVADCSHLK-LTQVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 385 YNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPES 444
           +N ++  +   +      L++L L +N L           TNL  L L  N         
Sbjct: 58  FNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 445 LSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC--LKVL 502
             K   L  L LS N LS         L  LQ++++ NN ++     E        LK L
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 503 DLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYY---PYLVTLDLSYNRLHG 558
           +LS+N I    P C  ++G +  + L+  ++   L   +        +  L LS ++L  
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

Query: 559 SIPNWID--KLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTA 616
           +        K   L+ + L+ N +          L ++    L +NN+       L    
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL- 295

Query: 617 LSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGID 676
                                                     N+          S +   
Sbjct: 296 ------------------------------------FNVRYLNLKR--------SFTKQS 311

Query: 677 LSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP 736
           +S   L         +L  +  LN+  N++ G     F+ L  ++ L LS +    +   
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 737 QLI----VLNTLAVFRVAYNNLSGKIPD 760
                    + L +  +  N +S    D
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESD 399

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  251 bits (642), Expect = 3e-73
 Identities = 104/557 (18%), Positives = 192/557 (34%), Gaps = 39/557 (7%)

Query: 72  SFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANM 131
           +F +I      S + L LS++ L    +          LQ L +   +++        ++
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
           + L  L +  N +       F  L  L++L     +L       + +L +L+ L+V++N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLT 251
           +          +LT++E L LS+N  Q       L  L ++   N  +        N + 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDL----SLNPMN 190

Query: 252 -------PKFQLTSISLSGYGDGGTFPK-FLYHQHDLNNADLSHLNLSGEFPNWLPENNT 303
                   + +L  ++L    D     K  +     L    L       E      + + 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 304 --DLKTLLLANNSL------FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLM 355
              L  L +    L              +CL  +++  + +            +Y  G  
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQ 307

Query: 356 HLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN--TL 413
           HL L    F           K LK L  + N+   A  E   +   SLE L LS N  + 
Sbjct: 308 HLELVNCKFGQFPTLKL---KSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSF 361

Query: 414 QGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRW-LGSL 472
           +G      F  T+LK L L  N  I  +  +      L  L    ++L          SL
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 473 LALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKN 530
             L  + + + +        F  L  L+VL ++ NS        +   L ++  + LS+ 
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 531 KIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ 590
           ++E    +  +    L  L++S+N            L  L  +  + N+I      +L  
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 591 L-KEVRLIDLSHNNLSG 606
               +  ++L+ N+ + 
Sbjct: 541 FPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  243 bits (622), Expect = 2e-70
 Identities = 116/605 (19%), Positives = 208/605 (34%), Gaps = 49/605 (8%)

Query: 29  FSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDR-MLVEVDTSFLQIVSESMASLRIL 87
             S K L +    L+  L    F  F  L+ L + R  +  ++    Q    S++ L  L
Sbjct: 27  PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTL 81

Query: 88  SLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG- 146
            L+ + +   ++       L  LQ+L   + +L     + + ++ +L+ LNVA N +   
Sbjct: 82  ILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 147 NFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRV----LDVSYNQLTENISSSPLM 202
             P  F  L  L  L + +N ++      L  L  + +    LD+S N +      +   
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-- 197

Query: 203 HLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLS 262
               + +L L NN   + +    +  L+ L+                   +  L     S
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR--------LVLGEFRNEGNLEKFDKS 249

Query: 263 GYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMP 322
                            +    L++L+   +    L    T++ +  L + ++       
Sbjct: 250 ------ALEGL--CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK--D 299

Query: 323 IHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD 382
                    L++ N  F           L  L  L  + N   G    S  D+  L+ LD
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLD 353

Query: 383 ISYNQLT--GAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGE 440
           +S N L+  G   +    G  SL+ L LS N +   + S    L  L+ L    +     
Sbjct: 354 LSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 441 IPES-LSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPI-PNEFCQLDC 498
              S       L  L +S  H           L +L+ + M  N+ +    P+ F +L  
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 499 LKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
           L  LDLS   +    P+  + L S++ +++S N               L  LD S N + 
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 558 GSIPNWIDKLP-QLSYILLANNYIEGEIPVQ--LCQLKEVRLIDLSHNNLSGHIPPCLVN 614
            S    +   P  L+++ L  N        Q  L  +K+ R + +    +    P     
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 591

Query: 615 TALSE 619
             +  
Sbjct: 592 MPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  186 bits (473), Expect = 5e-50
 Identities = 99/594 (16%), Positives = 170/594 (28%), Gaps = 122/594 (20%)

Query: 180 TSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ--IPISLEPLFNLSKLKTFNG 237
            S + LD+S+N L    S S       ++ L LS    Q     + + L +LS L     
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL----- 81

Query: 238 EIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNW 297
                                                          L+   +       
Sbjct: 82  ----------------------------------------------ILTGNPIQSLALGA 95

Query: 298 LPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHL 357
                + L+ L+    +L      PI  L+ L  L+V++N        E  + L  L HL
Sbjct: 96  F-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 358 NLSRNAFNGSIPSSFADMKMLK----SLDISYNQLTGAIPERMAMGCFSLEILALSNNTL 413
           +LS N       +    +  +     SLD+S N +    P   A     L  L L NN  
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--AFKEIRLHKLTLRNNFD 212

Query: 414 QGHIFSEKF-NLTNLKRLQLDGNKFIGEI---PESLSKCYLLGGLYLSDNHLSGKIPRWL 469
             ++       L  L+  +L   +F  E        S    L  L + +  L+       
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY------ 266

Query: 470 GSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSK 529
                        +     I + F  L  +    L + +I             + + L  
Sbjct: 267 ------------LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVN 313

Query: 530 NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI--EGEIPVQ 587
            K                   L++    G        LP L ++ L+ N +  +G     
Sbjct: 314 CKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 588 LCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPM 647
                 ++ +DLS N +       L    L                     +   +    
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD---------------FQH---S---- 406

Query: 648 GKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT 707
                       MS +     L ++  +D+S              L+ +  L ++ N+  
Sbjct: 407 ------NLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 708 GTI-PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760
               P  F+ L+ +  LDLS   L    P     L++L V  +++NN       
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  180 bits (458), Expect = 4e-48
 Identities = 90/490 (18%), Positives = 153/490 (31%), Gaps = 74/490 (15%)

Query: 283 ADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGH 342
                LN   + P+ LP +    K L L+ N L            +L  LD+S       
Sbjct: 12  YQCMELNFY-KIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 343 IPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS 402
                 + L  L  L L+ N        +F+ +  L+ L      L       +     +
Sbjct: 68  EDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKT 125

Query: 403 LEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPESLSKC----YLLGGLYLS 457
           L+ L +++N +Q     E F NLTNL+ L L  NK        L        L   L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 458 DNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQ-LDCLKVLDLSNNSIFGTLPSC 516
            N ++  I       + L  + + NN     +     Q L  L+V  L            
Sbjct: 186 LNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE---- 240

Query: 517 LSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRL---HGSIPNWIDKLPQLSYI 573
                          +E   +S +     L   +     L      I +  + L  +S  
Sbjct: 241 -------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 574 LLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHAS 633
            L +  IE             + ++L +          L +                   
Sbjct: 288 SLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSL------------------ 327

Query: 634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLT--GEIPTQIG 691
                            + + FT+      +    L S+  +DLS N L+  G       
Sbjct: 328 -----------------KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 692 YLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV-LNTLAVFRVA 750
             T ++ L+LS N +  T+ + F  L+Q+E LD  ++ L       + + L  L    ++
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 751 YNNLSGKIPD 760
           + +       
Sbjct: 430 HTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  159 bits (403), Expect = 5e-41
 Identities = 77/452 (17%), Positives = 163/452 (36%), Gaps = 21/452 (4%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           + +   L+EL +  + +   +L +  ++ ++L++L +    ++  ++  D      +  L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLL 178

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
            +   L     +F+Q  +     L  L+L  +  + N ++   +  L  L+   +   + 
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN-VMKTCIQGLAGLEVHRLVLGEF 237

Query: 121 RDSLLWC---LANMTSLQVLNVASNQLT------GNFPPGFCELVLLRELYIDNNDLRGS 171
           R+         + +  L  L +   +L        +    F  L  +    + +  +   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 172 LPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSK 231
                +     + L++   +        P + L S++ L  ++N      S   L +L  
Sbjct: 298 KDF--SYNFGWQHLELVNCKFG----QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 232 LKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLS 291
           L      +  +      S      L  + LS  G       FL  +  L + D  H NL 
Sbjct: 352 LDLSRNGLSFKGCCS-QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLK 409

Query: 292 GEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYL 351
                 +  +  +L  L +++     +F    + L  L  L ++ N F  +   +I T L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN 411
             L  L+LS+       P++F  +  L+ L++S+N               SL++L  S N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQVLDYSLN 528

Query: 412 TLQGHIFSEKFNL-TNLKRLQLDGNKFIGEIP 442
            +      E  +  ++L  L L  N F     
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (352), Expect = 2e-34
 Identities = 65/450 (14%), Positives = 126/450 (28%), Gaps = 71/450 (15%)

Query: 322 PIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSL 381
           P   +    T       F   IP  +        +L+LS N        SF     L+ L
Sbjct: 2   PCVEVVPNITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 382 DISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEI 441
           D+S  ++              L  L L+ N +Q         L++L++L           
Sbjct: 58  DLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 442 PESLSKCYLLGGLYLSDNHL-SGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLK 500
              +     L  L ++ N + S K+P +  +L  L+ + + +N ++     +   L  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 501 V----LDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL-ESIIHYYPYLVTLDLSYNR 555
           +    LDLS N +    P       + ++ L  N     + ++ I     L    L    
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 556 LHGSI---PNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCL 612
                         L  L  + +    +                +D   +++        
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRL--------------AYLDYYLDDIIDLFNCLT 282

Query: 613 VNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSM 672
             ++ S                  L                                   
Sbjct: 283 NVSSFS------------------LVSVTIERVK------------------DFSYNFGW 306

Query: 673 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH- 731
             ++L   K       ++  L       L+  +  G    +  +L  +E LDLS N L  
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLK-----RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 732 -GKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760
            G          +L    +++N +     +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 4e-15
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           L +++ +DLS  +L    PT    L+ ++ LN+SHNN        +  L  ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 729 LLHGKIPPQL-IVLNTLAVFRVAYNNLSGKIP 759
            +      +L    ++LA   +  N+ +    
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 3e-13
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           L+S+  + ++ N         I   L  +  L+LS   L    PT F++L  ++ L++S+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 728 NLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTF-EEDSYEGNPFLCGLPLS 785
           N            LN+L V   + N++       +  F +     +   N F C     
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYL-TRIRALNLSHNNLTGTIPTT--FSNLKQIESLDL 725
           L S+  +D S N +      ++ +  + +  LNL+ N+   T         +K    L +
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576

Query: 726 SYNLLHGKIPPQL 738
               +    P   
Sbjct: 577 EVERMECATPSDK 589

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  238 bits (610), Expect = 2e-68
 Identities = 78/619 (12%), Positives = 164/619 (26%), Gaps = 98/619 (15%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSP---LMHLTSIEELILSN 214
           +  L ++     G +P  +  LT L VL +  +    N        +    S E+     
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 215 NHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFL 274
            H+     ++                               L    ++      +  K  
Sbjct: 143 MHY-QKTFVDYDPREDFS----------------------DLIKDCINSDPQQKSIKKSS 179

Query: 275 YHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDV 334
                         N++      +    T L+   + N+             +       
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENS----- 232

Query: 335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE 394
                     ++    L  L  + +        +P+    +  ++ ++++ N+       
Sbjct: 233 EYAQQYKTEDLKWD-NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS---- 287

Query: 395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFI-GEIPESLSKCYLLGG 453
                                   ++      ++ + +  N      +  SL K   LG 
Sbjct: 288 -------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
           L    N L GK+P   GS + L  + +  N +     N     + ++ L  ++N +   +
Sbjct: 335 LECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYI 392

Query: 514 PSCLSLGSIEQ---VHLSKNKIEGQLESIIHYYPY-------LVTLDLSYNRLHGSIPNW 563
           P+     S+     +  S N+I                    + +++LS N++       
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 564 IDKLPQLSYILLANNYIEG-------EIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTA 616
                 LS I L  N +         +          +  IDL  N L+  +      T 
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATT 511

Query: 617 LSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGID 676
           L               S  + S FP          T++                  +  D
Sbjct: 512 LPY-------LVGIDLSYNSFSKFPTQ---PLNSSTLK-------------GFGIRNQRD 548

Query: 677 LSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP 736
              N+   E P  I     +  L +  N++         N+     LD+  N        
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLS 605

Query: 737 QLIVLNTLAVFRVAYNNLS 755
            +       ++ + Y+   
Sbjct: 606 YVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  236 bits (605), Expect = 7e-68
 Identities = 78/669 (11%), Positives = 172/669 (25%), Gaps = 162/669 (24%)

Query: 128 LANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRG----SLPLCLANLTSLR 183
           L +   +  L++     +G  P    +L  L  L + ++  +       P  ++   S  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 184 VLDVSYNQLTENI-SSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAE 242
                     +      P    + + +  ++++  Q  I         K           
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIGQL---- 191

Query: 243 TESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENN 302
                        +T +S +                      +  L              
Sbjct: 192 ----------SNNITFVSKA----------------------VMRL-------------- 205

Query: 303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRN 362
           T L+   + N+             +                 ++    L  L  + +   
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWD-NLKDLTDVEVYNC 259

Query: 363 AFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF 422
                +P+    +  ++ ++++ N+                               ++  
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGIS-----------------GEQLKDDWQALADAP 302

Query: 423 NLTNLKRLQLDGNKFI-GEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMP 481
               ++ + +  N      +  SL K   LG L    N L GK+P   GS + L  + + 
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLA 361

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQ---VHLSKNKIEGQLES 538
            N +     N     + ++ L  ++N +   +P+     S+     +  S N+I      
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 539 IIHYYPY-------LVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEG-------EI 584
                         + +++LS N++             LS I L  N +         + 
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 585 PVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNG 644
                    +  IDL  N L+  +      T L                           
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTK-LSDDFRATTL--------------------------- 512

Query: 645 SPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH- 703
                                      + GIDLS N  +   PTQ    + ++   + + 
Sbjct: 513 -------------------------PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546

Query: 704 -----NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKI 758
                N      P   +    +  L +  N +   +  ++     ++V  +  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISID 603

Query: 759 PDRVAQFST 767
              V  +  
Sbjct: 604 LSYVCPYIE 612

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  226 bits (577), Expect = 6e-64
 Identities = 85/569 (14%), Positives = 182/569 (31%), Gaps = 72/569 (12%)

Query: 80  SMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLR----DSLLWCLANMTSLQ 135
           S   +  LSL     +    +   + +L  L+ L +  +  +          ++   S +
Sbjct: 79  SNGRVTGLSLEGFGAS--GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 136 VLNVASNQLTGNFPPGFCELVL--LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 193
                       F           L +  I+++  + S+            +    N +T
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 194 ENISSSPLMHLTSIEELILSNNHF--QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLT 251
             +S + +M LT + +  + N+ F  +         N    + +  E     +  +++L 
Sbjct: 197 F-VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-----DLKWDNLK 249

Query: 252 PKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSG-----EFPNWLPE--NNTD 304
               LT + +    +    P FL    ++   +++           +    L +      
Sbjct: 250 ---DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 305 LKTLLLANNSLF-GSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNA 363
           ++ + +  N+L        +  ++KL  L+   N   G +P   G+    L  LNL+ N 
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQ 364

Query: 364 FNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG-CFSLEILALSNNTLQG------- 415
                 +     + +++L  ++N+L   IP          +  +  S N +         
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 416 HIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG-------KIPRW 468
            +    F   N+  + L  N+      E  S    L  + L  N L+             
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 469 LGSLLALQDIIMPNNNLEGPIPNEF--CQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQV 525
             +   L  I +  N L   + ++F    L  L  +DLS NS F   P+   +  +++  
Sbjct: 484 FKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGF 541

Query: 526 HLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIP 585
            +                      D   NR     P  I   P L+ + + +N I   + 
Sbjct: 542 GIRNQ------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VN 582

Query: 586 VQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
            ++     + ++D+  N         +  
Sbjct: 583 EKI--TPNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  212 bits (542), Expect = 4e-59
 Identities = 89/636 (13%), Positives = 171/636 (26%), Gaps = 106/636 (16%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           L++   +  L L        ++  +I   + L+ L++     K                 
Sbjct: 77  LNSNGRVTGLSLEGFGAS-GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN--- 132

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
                                 S            K  +      +   L +  I  +  
Sbjct: 133 ---------------------MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
           + S+            +   SN +T         L  LR+ Y+ N+              
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230

Query: 181 SLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIY 240
           +       Y Q  +        +L  + ++ + N      +    L  L +++  N    
Sbjct: 231 NS-----EYAQQYKTEDLK-WDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLIN---- 279

Query: 241 AETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPE 300
                  N                                       L    +     P 
Sbjct: 280 ----VACNRGI--------------------------------SGEQLKDDWQALADAP- 302

Query: 301 NNTDLKTLLLANNSLF-GSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNL 359
               ++ + +  N+L        +  ++KL  L+   N   G +P   G+    L  LNL
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNL 360

Query: 360 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG-CFSLEILALSNNTLQG--- 415
           + N       +     + +++L  ++N+L   IP          +  +  S N +     
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 416 ----HIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG-------K 464
                +    F   N+  + L  N+      E  S    L  + L  N L+         
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 465 IPRWLGSLLALQDIIMPNNNLEGPIPNE--FCQLDCLKVLDLSNNSI------FGTLPSC 516
                 +   L  I +  N L   + ++     L  L  +DLS NS            + 
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538

Query: 517 LSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA 576
              G   Q     N+   +    I   P L  L +  N +   +   I   P +S + + 
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIK 595

Query: 577 NNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCL 612
           +N         +C   E  +  L ++     I  C 
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGCD 630

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  159 bits (403), Expect = 6e-41
 Identities = 54/434 (12%), Positives = 120/434 (27%), Gaps = 104/434 (23%)

Query: 331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 390
             +   + +     V + +    +  L+L     +G +P +   +  L+ L +  +    
Sbjct: 61  NFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV 119

Query: 391 AIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL 450
                                              + ++ Q     +     +   +   
Sbjct: 120 NERL---------------------FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 451 --LGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNS 508
             L    ++ +     I +     L    I   +NN+   +     +L  L+   + N+ 
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP 217

Query: 509 IFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLP 568
                                                    +  Y + + +     D L 
Sbjct: 218 FVAENICEAWE----------------------------NENSEYAQQYKTEDLKWDNLK 249

Query: 569 QLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPT 628
            L+ + + N     ++P  L  L E++LI+++ N             AL++         
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP------- 302

Query: 629 WDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKL-TGEIP 687
                                                  +   +  I +  N L T  + 
Sbjct: 303 ---------------------------------------VGEKIQIIYIGYNNLKTFPVE 323

Query: 688 TQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI-VLNTLAV 746
           T +  + ++  L   +N L G +P  F +  ++ SL+L+YN +   IP         +  
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVEN 381

Query: 747 FRVAYNNLSGKIPD 760
              A+N L   IP+
Sbjct: 382 LSFAHNKLKY-IPN 394

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 6e-10
 Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 6/119 (5%)

Query: 676 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG--- 732
           +   +    +    +    R+  L+L     +G +P     L ++E L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 733 -KIPPQLIVLNTLAVFRVAYNNLSGKIPDRVA--QFSTFEEDSYEGNPFLCGLPLSKSC 788
              P  +    +    +    +      D      FS   +D    +P    +  S   
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 27/240 (11%), Positives = 67/240 (27%), Gaps = 44/240 (18%)

Query: 1   LHNFTNLEELIL------VESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEF 54
             + + +  +             +   L  +     ++  +++    +      + F   
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTG 456

Query: 55  KNLEHLVMDR-MLVEVDTSFLQIVSESMA---SLRILSLSYSRLNKNTILDQGLCELVHL 110
             L  + +   ML E+  + L+  +E+      L  + L +++L K    D     L +L
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYL 515

Query: 111 QELYIRDN------------------DLRDSLLWC-----------LANMTSLQVLNVAS 141
             + +  N                   +R+                +    SL  L + S
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 142 NQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPL 201
           N +             +  L I +N         +       +  + Y++  +      L
Sbjct: 576 NDIRK-VNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  237 bits (607), Expect = 2e-68
 Identities = 109/533 (20%), Positives = 187/533 (35%), Gaps = 40/533 (7%)

Query: 109 HLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDL 168
             + L    N L        + + +L  L++   Q+       F     L  L +  N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 169 RGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFN 228
                  L+   +L+ L      ++  I   PL +  ++E L L +NH    I L   F 
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISS-IKLPKGFP 151

Query: 229 LSKLKTFN------GEIYAET------------ESHYNSLT-------PKFQLTSISLSG 263
             KLK  +        +  E               + N +              S++  G
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 264 YGDGGTFPKFLYHQH--DLNNADLSHLNLSGEFPNWLPEN-NTDLKTLLLANNSLFGSFR 320
             +     K L +     L       ++     P          ++++ L  +  F    
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 321 MPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKS 380
              HC   L  LD++    L  +P  +   L  L  L LS N F      S ++   L  
Sbjct: 272 NTFHCFSGLQELDLTAT-HLSELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 381 LDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK--FNLTNLKRLQLDGNKFI 438
           L I  N     +         +L  L LS++ ++          NL++L+ L L  N+ +
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 439 GEIPESLSKCYLLGGLYLSDNHLSGKIPR-WLGSLLALQDIIMPNNNLEGPIPNEFCQLD 497
               E+  +C  L  L L+   L  K  +    +L  L+ + + ++ L+      F  L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 498 CLKVLDLSNNSIFGTLPSCLS----LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553
            L+ L+L  N          +    LG +E + LS   +    +        +  +DLS+
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509

Query: 554 NRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606
           NRL  S    +  L  + Y+ LA+N+I   +P  L  L + R I+L  N L  
Sbjct: 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  232 bits (593), Expect = 2e-66
 Identities = 97/538 (18%), Positives = 179/538 (33%), Gaps = 42/538 (7%)

Query: 83  SLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASN 142
           S   L  S++ L   TI +     L++L  L +    +         +   L  L + +N
Sbjct: 34  STECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 143 QLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLM 202
            L             L+ L+     +     + L N  +L  L +  N ++ +I      
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGF 150

Query: 203 HLTSIEELILSNNHFQ--IPISLEPLFNLSKLK---TFNGEIYAETESHYNSLTPKFQLT 257
               ++ L   NN         +  L   + L      N     +               
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-----DIAGIEPGAFDSAVFQ 205

Query: 258 SISLSGYGDGGTFPKFLYHQH--DLNNADLSHLNLSGEFPNWLPEN-NTDLKTLLLANNS 314
           S++  G  +     K L +     L       ++     P          ++++ L  + 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 315 LFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFAD 374
            F       HC   L  LD++    L  +P  +   L  L  L LS N F      S ++
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATH-LSELPSGLV-GLSTLKKLVLSANKFENLCQISASN 323

Query: 375 MKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK--FNLTNLKRLQL 432
              L  L I  N     +         +L  L LS++ ++          NL++L+ L L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPR-WLGSLLALQDIIMPNNNLEGPIPN 491
             N+ +    E+  +C  L  L L+   L  K  +    +L  L+ + + ++ L+     
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 492 EFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDL 551
            F  L  L+ L+L  N          +        L +                L  L L
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQ----TLGR----------------LEILVL 483

Query: 552 SYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609
           S+  L     +    L  ++++ L++N +       L  LK + L +L+ N++S  +P
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  208 bits (531), Expect = 8e-58
 Identities = 116/604 (19%), Positives = 213/604 (35%), Gaps = 32/604 (5%)

Query: 15  SDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDR-MLVEVDTSF 73
            +L ++++  ++   +S + L     VL   +    F    NL  L + R  +  +    
Sbjct: 20  ENLGLNEIPGTL--PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDT 76

Query: 74  LQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTS 133
            Q    S   L  L L+ + L    + +  L     L+ L+     +       L N  +
Sbjct: 77  FQ----SQHRLDTLVLTANPLI--FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 134 LQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRV--LDVSYNQ 191
           L+ L + SN ++    P       L+ L   NN +       +++L       L+++ N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPI----SLEPLFNLSKLKTFNGEIYAETESHY 247
           +   I           + L        + I        + +L      + +    + + +
Sbjct: 191 IAG-IEPG-AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 248 NSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKT 307
             L  +  + SI+L  +          +    L   DL+  +LS E P+ L    + LK 
Sbjct: 249 EGL-CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKK 305

Query: 308 LLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGS 367
           L+L+ N      ++       L  L +  N     +       L  L  L+LS +    S
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 368 --IPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF-NL 424
                   ++  L+SL++SYN+    +       C  LE+L L+   L+       F NL
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKI---PRWLGSLLALQDIIMP 481
             LK L L  +       +       L  L L  NH           L +L  L+ +++ 
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH 541
             +L     + F  L  +  +DLS+N +  +    LS      ++L+ N I   L S++ 
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP 544

Query: 542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSH 601
                 T++L  N L  +  N    +  L +       +E            +R + LS 
Sbjct: 545 ILSQQRTINLRQNPLDCTCSN----IYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSD 600

Query: 602 NNLS 605
             LS
Sbjct: 601 VTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (369), Expect = 1e-36
 Identities = 78/455 (17%), Positives = 144/455 (31%), Gaps = 63/455 (13%)

Query: 324 HCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDI 383
              +   T +  N   L  IP  +         L  S N       ++F+ +  L  LD+
Sbjct: 9   IEKEVNKTYNCENLG-LNEIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 384 SYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE 443
           +  Q+                   +  +T Q        +   L  L L  N  I     
Sbjct: 65  TRCQIYW-----------------IHEDTFQ--------SQHRLDTLVLTANPLIFMAET 99

Query: 444 SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLD 503
           +LS    L  L+     +S      L +   L+ + + +N++      +    + LKVLD
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 504 LSNNSIFGTLPSCLS-LGSIEQV--HLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI 560
             NN+I       +S L     +  +L+ N I G +E          +L+    +    I
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 561 PNWID--KLPQLSYILLANNYIEGEIPVQLCQLKEVRL--IDLSHNNLSGHIPPCLVNTA 616
              +    +  L      +   E   P     L E+ +  I+L  +             +
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 617 ------LSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRI-- 668
                 L+  +               LS  P     +   + +  +        +     
Sbjct: 279 GLQELDLTATH---------------LSELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 669 LTSMSGIDLSCNKLTGEIPTQ-IGYLTRIRALNLSHNNLT--GTIPTTFSNLKQIESLDL 725
             S++ + +  N    E+ T  +  L  +R L+LSH+++           NL  ++SL+L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 726 SYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760
           SYN               L +  +A+  L  K   
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  119 bits (301), Expect = 4e-28
 Identities = 72/396 (18%), Positives = 134/396 (33%), Gaps = 72/396 (18%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
            H F+ L+EL L  +  H+S+L   +   S+LK L +     +  L       F +L HL
Sbjct: 274 FHCFSGLQELDL--TATHLSELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHL 330

Query: 61  VMDR--MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDN 118
            +      +E+ T  L+    ++ +LR L LS+  +  +   +  L  L HLQ L +  N
Sbjct: 331 SIKGNTKRLELGTGCLE----NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 119 DLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLA 177
           +              L++L++A  +L        F  L LL+ L + ++ L  S      
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 178 NLTSLRVLDVSYNQLTENISSSP--LMHLTSIEELILSNNHFQ--IPISLEPLFNLSKLK 233
            L +L+ L++  N   +        L  L  +E L+LS          +   L  ++ + 
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV- 505

Query: 234 TFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGE 293
                                                             DLSH  L+  
Sbjct: 506 --------------------------------------------------DLSHNRLTSS 515

Query: 294 FPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPG 353
               L   +     L LA+N +       +  L +  T+++  N             +  
Sbjct: 516 SIEALS--HLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN-----IYF 568

Query: 354 LMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT 389
           L     +      +  +   +  +L+ + +S   L+
Sbjct: 569 LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIG---YLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDL 725
           L ++  ++L  N        +      L R+  L LS  +L+      F++LK +  +DL
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 726 SYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 780
           S+N L      + +         +A N++S  +P  +   S     +   NP  C
Sbjct: 508 SHNRLTS-SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 1/118 (0%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
             ++  +      ++      +     + +L L  N+++          ++++ LD   N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLS-GKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 785
            +H      +  L       +  N      I       + F+  ++ G   L  +   
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 4e-09
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 669 LTSMSGIDLSCNKLT--GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS 726
           L ++  +DLS + +        Q+  L+ +++LNLS+N         F    Q+E LDL+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 727 YNLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPD 760
           +  L  K        L+ L V  ++++ L      
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  231 bits (591), Expect = 4e-66
 Identities = 100/544 (18%), Positives = 189/544 (34%), Gaps = 37/544 (6%)

Query: 82  ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVAS 141
           +S + + LS++ L    +          LQ L +   ++          +  L  L +  
Sbjct: 32  SSTKNIDLSFNPLK--ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 142 NQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPL 201
           N +    P  F  L  L  L      L       +  L +L+ L+V++N +      +  
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 202 MHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLT-------PKF 254
            +LT++  + LS N+ Q  I++  L  L +    N  +        N +           
Sbjct: 150 SNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDM----SLNPIDFIQDQAFQGI 204

Query: 255 QLTSISLSGYGDGGTFPKFLY------HQHDLNNADLSHLNLSGEFPNWLPENNTDL--K 306
           +L  ++L G  +     K         H H L   +         F   + E   D+   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 307 TLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG 366
              L   + F    +  HCL  ++ + ++         +E          L++ R     
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 367 SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ--GHIFSEKFNL 424
                  D+  LKSL ++ N+ + +  +   +   SL  L LS N L   G         
Sbjct: 322 F---PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRW-LGSLLALQDIIMPNN 483
            +L+ L L  N     +  +      L  L    + L          SL  L  + +   
Sbjct: 376 NSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 484 NLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIH 541
           N +      F  L  L  L ++ NS      S +  +  ++  + LSK ++E     +  
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSH 601
               L  L++S+N L     +  ++L  LS +  + N IE    +     K +   +L++
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

Query: 602 NNLS 605
           N+++
Sbjct: 555 NSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  201 bits (514), Expect = 1e-55
 Identities = 97/637 (15%), Positives = 191/637 (29%), Gaps = 125/637 (19%)

Query: 109 HLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDL 168
             + + +  N L+    +  +N + LQ L+++  ++       +  L  L  L +  N +
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 169 RGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFN 228
           +   P   + LTSL  L     +L   + S P+  L ++++L +++N            N
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 229 LSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHL 288
           L+ L   +          YN +                                      
Sbjct: 152 LTNLVHVD--------LSYNYIQ------------------------------------- 166

Query: 289 NLSGEFPNWLPENNTDLKTLLLANNSL----FGSFRMPIHCLQKLATLDVSNNFFLGHIP 344
            ++     +L EN     +L ++ N +      +F+       KL  L +  NF   +I 
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ-----GIKLHELTLRGNFNSSNIM 221

Query: 345 VEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLE 404
                 L GL    L    F         +  +++ L                    +++
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-----------------TID 264

Query: 405 ILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGK 464
              L+          +   L N+  + L G     +  E + K +    L +    L   
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 465 IPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSC----LSLG 520
               L  L   + + +  N     I  +   L  L  LDLS N++      C    L   
Sbjct: 323 PTLDLPFL---KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNAL-SFSGCCSYSDLGTN 376

Query: 521 SIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNW-IDKLPQLSYILLANNY 579
           S+  + LS N     + +       L  LD  ++ L           L +L Y+ ++   
Sbjct: 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 580 IEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN-----TALSEGYYDAVAPTWDHASA 634
            + +       L  +  + ++ N+   +    +       T L               S 
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL-------------DLSK 482

Query: 635 PALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLT 694
             L                 F T           L  +  +++S N L     +    L 
Sbjct: 483 CQLEQISWG----------VFDT-----------LHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 695 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731
            +  L+ S N +  +        K +   +L+ N + 
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  199 bits (509), Expect = 7e-55
 Identities = 98/617 (15%), Positives = 191/617 (30%), Gaps = 111/617 (17%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
            + + +  N L+       +N + L+ LD+S  ++   I       L  +  LIL+ N  
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPI 92

Query: 218 Q--IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLY 275
           Q   P S   L +L  L                                           
Sbjct: 93  QSFSPGSFSGLTSLENL------------------------------------------- 109

Query: 276 HQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFG-SFRMPIHCLQKLATLDV 334
                         L+      +      LK L +A+N +           L  L  +D+
Sbjct: 110 --------VAVETKLASLESFPI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 335 SNNFFLGHIPVEIGTYLPGL----MHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 390
           S N+ +  I V    +L       + L++S N  +     +F  +K L  L +  N  + 
Sbjct: 161 SYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSS 218

Query: 391 AIPERMAMGCFSLEILALSNNTLQGHIFSEKF------NLTNLKRLQLD--GNKFIGEIP 442
            I +        L +  L     +     E F       L ++   +          +  
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 443 ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL 502
                   +  + L+   +       +      Q + +    L+         L  LK L
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSL 333

Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH--YYPYLVTLDLSYNRLHGSI 560
            L+ N         ++L S+  + LS+N +               L  LDLS+N     +
Sbjct: 334 TLTMNKG-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IM 391

Query: 561 PNWIDKLPQLSYILLANNYIEGEIPVQ-LCQLKEVRLIDLSHNNLSGHIPPCLVN-TALS 618
                 L +L ++   ++ ++          L+++  +D+S+ N         +  T+L 
Sbjct: 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL- 450

Query: 619 EGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLS 678
                         +  +      +                          T+++ +DLS
Sbjct: 451 ---------NTLKMAGNSFKDNTLSNVFAN--------------------TTNLTFLDLS 481

Query: 679 CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL 738
             +L          L R++ LN+SHNNL     + ++ L  + +LD S+N +        
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 739 IVLNTLAVFRVAYNNLS 755
               +LA F +  N+++
Sbjct: 542 HFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  165 bits (419), Expect = 4e-43
 Identities = 85/496 (17%), Positives = 160/496 (32%), Gaps = 59/496 (11%)

Query: 283 ADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGH 342
                  LS + P+ +P +    K + L+ N L            +L  LD+S    +  
Sbjct: 16  YQCMDQKLS-KVPDDIPSS---TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IET 70

Query: 343 IPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS 402
           I  +    L  L +L L+ N      P SF+ +  L++L     +L   +         +
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLIT 129

Query: 403 LEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPESLS----KCYLLGGLYLS 457
           L+ L +++N +        F NLTNL  + L  N         L        +   L +S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 458 DNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQ-LDCLKVLDLSNNSIFG----- 511
            N +   I       + L ++ +  N     I     Q L  L V  L            
Sbjct: 190 LNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 512 ----TLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKL 567
               ++   L   +I++  L+            H    +  + L+   +   + +   K 
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVP-KH 306

Query: 568 PQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAP 627
            +   + +    ++    + L  LK    + L+ N  S      +   +LS         
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPFLKS---LTLTMNKGS-ISFKKVALPSLSYLD------ 356

Query: 628 TWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIP 687
                    LS    + S          +  ++          S+  +DLS N     + 
Sbjct: 357 ---------LSRNALSFSGCC-------SYSDLG-------TNSLRHLDLSFNGAI-IMS 392

Query: 688 TQIGYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAV 746
                L  ++ L+  H+ L        F +L+++  LD+SY           + L +L  
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 747 FRVAYNNLSGKIPDRV 762
            ++A N+        V
Sbjct: 453 LKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (399), Expect = 2e-40
 Identities = 82/466 (17%), Positives = 152/466 (32%), Gaps = 37/466 (7%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
               T+LE L+ VE+ L   +    I    +LK L++    +        F    NL H+
Sbjct: 100 FSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158

Query: 61  VMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDND 119
            +    +  +  + LQ + E+      L +S    N    +     + + L EL +R N 
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSL---NPIDFIQDQAFQGIKLHELTLRGNF 215

Query: 120 LRDSLLW-CLANMTSLQVLNVASNQLTGNFP---------PGFCELVLLRELYIDNNDLR 169
              +++  CL N+  L V  +   +                G C++ +  E  +   +  
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID-EFRLTYTNDF 274

Query: 170 GSLPLCLANLTSLRVLDVSYNQLTE------------------NISSSPLMHLTSIEELI 211
               +    L ++  + ++   +                     +   P + L  ++ L 
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT 334

Query: 212 LSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFP 271
           L+ N   I      L +LS L      +       Y+ L     L  + LS  G      
Sbjct: 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN-SLRHLDLSFNG-AIIMS 392

Query: 272 KFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLAT 331
                  +L + D  H  L          +   L  L ++  +    F      L  L T
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 332 LDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGA 391
           L ++ N F  +    +      L  L+LS+          F  +  L+ L++S+N L   
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF- 511

Query: 392 IPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKF 437
           +        +SL  L  S N ++      +    +L    L  N  
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  144 bits (364), Expect = 5e-36
 Identities = 74/451 (16%), Positives = 147/451 (32%), Gaps = 59/451 (13%)

Query: 325 CLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDIS 384
            +    T    +   L  +P +I +      +++LS N        SF++   L+ LD+S
Sbjct: 9   EVVPNITYQCMDQK-LSKVPDDIPSST---KNIDLSFNPLKILKSYSFSNFSELQWLDLS 64

Query: 385 YNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPES 444
             ++   I ++   G   L  L L+ N +Q         LT+L+ L     K        
Sbjct: 65  RCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123

Query: 445 LSKCYLLGGLYLSDNHLSG-KIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQL----DCL 499
           + +   L  L ++ N +   K+P +  +L  L  + +  N ++    N+   L       
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL-ESIIHYYPYLVTLDLSYNRLHG 558
             LD+S N I            + ++ L  N     + ++ +     L    L       
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 559 SI------PNWIDKLPQLSYILL--ANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP 610
                   P+ ++ L  ++             +  V+   L  V  + L+  ++  ++  
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED 302

Query: 611 CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT 670
              +                      L  FP                           L 
Sbjct: 303 VPKHFKWQSLSI----------IRCQLKQFPTLD------------------------LP 328

Query: 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLK--QIESLDLSYN 728
            +  + L+ NK +  I  +   L  +  L+LS N L+ +   ++S+L    +  LDLS+N
Sbjct: 329 FLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759
                +    + L  L      ++ L     
Sbjct: 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  128 bits (323), Expect = 7e-31
 Identities = 74/402 (18%), Positives = 143/402 (35%), Gaps = 42/402 (10%)

Query: 366 GSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLT 425
           GS+      +  + +      +L+  +P+ +     S + + LS N L+        N +
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFSNFS 56

Query: 426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL 485
            L+ L L   +      ++    + L  L L+ N +    P     L +L++++     L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 486 EGPIPNEFCQLDCLKVLDLSNNSIFG-TLPSCLS-LGSIEQVHLSKNKI----EGQLESI 539
                    QL  LK L++++N I    LP+  S L ++  V LS N I       L+ +
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 540 IHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ-LKEVRLID 598
                  ++LD+S N +   I +   +  +L  + L  N+    I     Q L  + +  
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 599 LSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTK 658
           L            +   ++ EG  D     +       L+Y       + K         
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFR------LTYTNDFSDDIVKFHC------ 283

Query: 659 NMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLK 718
                     L ++S + L+   +       +    + ++L++    L          LK
Sbjct: 284 ----------LANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331

Query: 719 QIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760
              SL L+ N   G I  + + L +L+   ++ N LS     
Sbjct: 332 ---SLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCC 368

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.5 bits (207), Expect = 1e-16
 Identities = 43/294 (14%), Positives = 83/294 (28%), Gaps = 50/294 (17%)

Query: 487 GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYL 546
           G +      +         +  +   +P  +   S + + LS N ++         +  L
Sbjct: 2   GSLNPCIEVVP-NITYQCMDQKLS-KVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSEL 58

Query: 547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606
             LDLS   +          L  LS ++L  N I+   P     L  +  +      L+ 
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 607 HIPPCLVNTA------LSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNM 660
                +          ++  +               +                 F+    
Sbjct: 119 LESFPIGQLITLKKLNVAHNF---------------IHSCKLPAY---------FSN--- 151

Query: 661 SYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA----LNLSHNNLTGTIPTTFSN 716
                   LT++  +DLS N +       + +L         L++S N +       F  
Sbjct: 152 --------LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 717 LKQIESLDLSYNLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPDRVAQFSTFE 769
           +K +  L L  N     I    +  L  L V R+       +    + + S  E
Sbjct: 204 IK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.4 bits (152), Expect = 4e-10
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 1/113 (0%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           LTS++ + ++ N       + +    T +  L+LS   L       F  L +++ L++S+
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 728 NLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 780
           N L          L +L+    ++N +            +    +   N   C
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  207 bits (530), Expect = 1e-60
 Identities = 74/362 (20%), Positives = 133/362 (36%), Gaps = 75/362 (20%)

Query: 440 EIPESLSKCYLL----GGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEG--PIPNEF 493
           +I + L     L          +    G +         + ++ +   NL    PIP+  
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 494 CQLDCLKVLDLSN-NSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS 552
             L  L  L +   N++ G +P  ++        L++                L  L ++
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIA-------KLTQ----------------LHYLYIT 109

Query: 553 YNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCL 612
           +  + G+IP+++ ++  L  +  + N + G +P  +  L  +  I    N +SG IP   
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 613 VN-TALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTS 671
            + + L                   +S    N          + T         G+I  +
Sbjct: 170 GSFSKLFTSMT--------------ISR---N----------RLT---------GKIPPT 193

Query: 672 MSG-----IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS 726
            +      +DLS N L G+     G     + ++L+ N+L   +       K +  LDL 
Sbjct: 194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252

Query: 727 YNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSK 786
            N ++G +P  L  L  L    V++NNL G+IP        F+  +Y  N  LCG PL  
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL-P 310

Query: 787 SC 788
           +C
Sbjct: 311 AC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  198 bits (505), Expect = 4e-57
 Identities = 83/332 (25%), Positives = 133/332 (40%), Gaps = 41/332 (12%)

Query: 286 SHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLG--HI 343
             L       +WLP  +         N +  G          ++  LD+S         I
Sbjct: 16  KDLGNPTTLSSWLPTTD-------CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI 68

Query: 344 PVEIGTYLPGLMHLNLS-RNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS 402
           P  +   LP L  L +   N   G IP + A +  L  L I++  ++GAIP+ ++    +
Sbjct: 69  PSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKT 126

Query: 403 LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKC-YLLGGLYLSDNHL 461
           L  L  S N L G +     +L NL  +  DGN+  G IP+S      L   + +S N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 462 SGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGS 521
           +GKIP    +L  L  + +  N LEG     F      + + L+ NS+   L     +G 
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG---KVGL 242

Query: 522 IEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE 581
            +                      L  LDL  NR++G++P  + +L  L  + ++ N + 
Sbjct: 243 SKN---------------------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 582 GEIPVQLCQLKEVRLIDLSHNNL--SGHIPPC 611
           GEIP Q   L+   +   ++N       +P C
Sbjct: 282 GEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  185 bits (473), Expect = 8e-53
 Identities = 76/359 (21%), Positives = 115/359 (32%), Gaps = 85/359 (23%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG--AIPERMAMGCFSLEILALSN-NTL 413
            +     + G +  +      + +LD+S   L     IP  +A     L  L +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNL 89

Query: 414 QGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLL 473
            G I      LT L  L +      G IP+ LS+   L  L  S N LSG +P  + SL 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 474 ALQDIIMPNNNLEGPIPNEFCQLDCL-KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKI 532
            L  I    N + G IP+ +     L   + +S N + G +P   +  ++          
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP--TFANLN--------- 198

Query: 533 EGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK 592
                        L  +DLS N L G              I LA N +  ++  ++   K
Sbjct: 199 -------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244

Query: 593 EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEET 652
            +  +DL +N + G +P  L                        L               
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQ-------------------LKFLHSL------------ 273

Query: 653 VQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP 711
                 N+S+                 N L GEIP   G L R      ++N      P
Sbjct: 274 ------NVSF-----------------NNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  164 bits (417), Expect = 3e-45
 Identities = 73/300 (24%), Positives = 115/300 (38%), Gaps = 33/300 (11%)

Query: 196 ISSSPLMHLTSIEELILSNNHF--QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPK 253
           +          +  L LS  +     PI    L NL  L               N+L   
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLY-------IGGINNLV-- 90

Query: 254 FQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANN 313
                         G  P  +     L+   ++H N+SG  P++L      L TL  + N
Sbjct: 91  --------------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYN 135

Query: 314 SLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA 373
           +L G+    I  L  L  +    N   G IP   G++      + +SRN   G IP +FA
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

Query: 374 DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLD 433
           ++  L  +D+S N L G           + + + L+ N+L   +  +     NL  L L 
Sbjct: 196 NLN-LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLR 252

Query: 434 GNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL--EGPIPN 491
            N+  G +P+ L++   L  L +S N+L G+IP+  G+L         NN      P+P 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  156 bits (398), Expect = 1e-42
 Identities = 69/311 (22%), Positives = 116/311 (37%), Gaps = 64/311 (20%)

Query: 107 LVHLQELYIRDNDLR--DSLLWCLANMTSLQVLNVAS-NQLTGNFPPGFCELVLLRELYI 163
              +  L +   +L     +   LAN+  L  L +   N L G  PP   +L  L  LYI
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF--QIPI 221
            + ++ G++P  L+ + +L  LD SYN L+  +  S +  L ++  +    N     IP 
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPD 167

Query: 222 SLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLN 281
           S     + SKL T                                               
Sbjct: 168 SY---GSFSKLFTS---------------------------------------------- 178

Query: 282 NADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLG 341
              +S   L+G+ P      N +L  + L+ N L G   +     +    + ++ N    
Sbjct: 179 -MTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 342 HIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF 401
            +  ++G     L  L+L  N   G++P     +K L SL++S+N L G IP+    G  
Sbjct: 236 DLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNL 290

Query: 402 S-LEILALSNN 411
              ++ A +NN
Sbjct: 291 QRFDVSAYANN 301

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  220 bits (562), Expect = 2e-60
 Identities = 95/683 (13%), Positives = 190/683 (27%), Gaps = 156/683 (22%)

Query: 128 LANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDV 187
           L N   +  L++A     G  P    +L  L+ L    +    S  L      +  + + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 188 SYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHY 247
             +++  +     L +   +    L  +       ++P+   S++   + +I     +  
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI----GNLT 434

Query: 248 NSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKT 307
           N +T                    K +     L    L  +  +     +      D + 
Sbjct: 435 NRIT-----------------FISKAI---QRLTK--LQIIYFANSPFTYDNI-AVDWED 471

Query: 308 LLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG- 366
                   + +  +    L+ L  +++ N   +  +P  +   LP L  LN++ N     
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISA 530

Query: 367 --------SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF 418
                    +         ++   + YN L    P   ++                    
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQ------------------- 570

Query: 419 SEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLL-ALQD 477
                +  L  L    NK      E+      L  L L  N +   IP    +    ++ 
Sbjct: 571 ----KMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEG 623

Query: 478 IIMPNNNLEG-PIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL 536
           +   +N L+  P       +  +  +D S N I G+    +S    +   ++        
Sbjct: 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSMDDYKGIN-------- 674

Query: 537 ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE-------GEIPVQLC 589
                      T+ LSYN +             +S I+L+NN +                
Sbjct: 675 ---------ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 590 QLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGK 649
               +  IDL  N L+  +      T L                                
Sbjct: 726 NTYLLTTIDLRFNKLTS-LSDDFRATTL-------------------------------- 752

Query: 650 EETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH------ 703
                                 +S +D+S N  +   PTQ    ++++A  + H      
Sbjct: 753 --------------------PYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 704 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNL-SGKIPDRV 762
           N +    PT  +    +  L +  N +  K+  +L     L +  +A N   S  +    
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVC 848

Query: 763 AQFSTFEED-SYEGNPFLCGLPL 784
                      Y+    + G   
Sbjct: 849 PYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  208 bits (532), Expect = 2e-56
 Identities = 84/544 (15%), Positives = 161/544 (29%), Gaps = 72/544 (13%)

Query: 104 LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI 163
           L     +  L +     +  +   +  +T L+VL+  ++  T +      E +       
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 164 DNNDLRGSLP-LCLANLTSLRVLDVSYNQLTEN-----ISSSPLMHLTSIEELILSNNHF 217
             + +R     + L     L + D+  + +  N     I     + L   +   L+N   
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ 277
            I  +++ L  L  +   N                       +               + 
Sbjct: 439 FISKAIQRLTKLQIIYFANSPF--------TYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 278 HDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMP---------IHCLQK 328
            DL + +L +     + P++L  +  +L++L +A N    + ++               K
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 329 LATLDVSNNFFLGHIPVEIG-TYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ 387
           +    +  N  L   P       +  L  L+   N        +F     L  L + YNQ
Sbjct: 550 IQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQ 606

Query: 388 LTGAIPERMAMGCFSLEILALSNNTLQG-HIFSEKFNLTNLKRLQLDGNKFIGEIPESLS 446
           +   IPE        +E L  S+N L+         ++  +  +    NK   E      
Sbjct: 607 IEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 447 KCYLLGG-----LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE-------GPIPNEFC 494
                 G     + LS N +         +   +  II+ NN +         P    + 
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 495 QLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN 554
               L  +DL  N +  +L       +                      PYL  +D+SYN
Sbjct: 726 NTYLLTTIDLRFNKL-TSLSDDFRATT---------------------LPYLSNMDVSYN 763

Query: 555 RLHGSIPNWIDKLPQLSYI------LLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI 608
               S P       QL             N I  + P  +     +  + +  N++   +
Sbjct: 764 CFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KV 821

Query: 609 PPCL 612
              L
Sbjct: 822 DEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  202 bits (516), Expect = 2e-54
 Identities = 86/584 (14%), Positives = 166/584 (28%), Gaps = 89/584 (15%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           +   T L+ L        VS  L      +       +   ++           + L   
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH-RIRMHYKKMFLDYDQRLNLS 401

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
            + +  +  +     I  +S  SL+   +     N+ T + + +  L  LQ +Y  ++  
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-NRITFISKAIQRLTKLQIIYFANSPF 460

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
                         +  N    +   N    +  L  L ++ + N      LP  L +L 
Sbjct: 461 T-----YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 181 SLRVLDVSYNQLTENISSSP--------LMHLTSIEELILSNNHF-QIPISLEPLFNLSK 231
            L+ L+++ N+                       I+   +  N+  + P S   L  + K
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS-LQKMVK 574

Query: 232 LKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLS 291
           L   +          +N +     L +                       N  L+ L L 
Sbjct: 575 LGLLD--------CVHNKVR---HLEAFG--------------------TNVKLTDLKLD 603

Query: 292 G----EFPNWLPENNTDLKTLLLANNSLFG-SFRMPIHCLQKLATLDVSNNFFLGHIPVE 346
                E P         ++ L  ++N L           +  + ++D S N  +G     
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRN 662

Query: 347 IGTYLPG-----LMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF 401
           I   +          + LS N         FA    + ++ +S N +T +IPE       
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSL---- 717

Query: 402 SLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL--LGGLYLSDN 459
                                N   L  + L  NK +  + +      L  L  + +S N
Sbjct: 718 -------------KPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYN 763

Query: 460 HLSGKIPRWLGSLLALQDI------IMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
             S   P    +   L+            N +    P        L  L + +N I   +
Sbjct: 764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKV 821

Query: 514 PSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
              L    +  + ++ N       + +  Y       L Y++  
Sbjct: 822 DEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  202 bits (515), Expect = 3e-54
 Identities = 91/564 (16%), Positives = 192/564 (34%), Gaps = 58/564 (10%)

Query: 80  SMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNV 139
           +   +  LSL+         +   + +L  L+ L    +    S         +  +   
Sbjct: 321 NNGRVTGLSLAGFGAK--GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 140 ASNQLTGNFPPGFCE-------LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQL 192
             +++  ++   F +         LL++    N +++        +L   ++ +++ N++
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-NRI 437

Query: 193 TENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTP 252
           T  IS + +  LT ++ +  +N+ F          +     +   + Y   E  +++L  
Sbjct: 438 TF-ISKA-IQRLTKLQIIYFANSPFT---YDNIAVDWEDANSDYAKQYENEELSWSNLK- 491

Query: 253 KFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFP-----NWLPE---NNTD 304
              LT + L    +    P FLY   +L + +++                L +       
Sbjct: 492 --DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 305 LKTLLLANNSLFG-SFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNA 363
           ++   +  N+L        +  + KL  LD  +N  + H+    GT    L  L L  N 
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGT-NVKLTDLKLDYNQ 606

Query: 364 FNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG-CFSLEILALSNNTLQGH-----I 417
                    A    ++ L  S+N+L   IP        + +  +  S N +         
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 418 FSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS-------GKIPRWLG 470
             + +   N   + L  N+      E  +    +  + LS+N ++               
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 471 SLLALQDIIMPNNNLEGPIPNE--FCQLDCLKVLDLSNNSIFGTLPSCL-------SLGS 521
           +   L  I +  N L   + ++     L  L  +D+S N  F + P+         + G 
Sbjct: 726 NTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGI 783

Query: 522 IEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE 581
             Q     N+I  Q  + I   P L+ L +  N +   +   +   PQL  + +A+N   
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNI 840

Query: 582 GEIPVQLCQLKEVRLIDLSHNNLS 605
                 +C   E  +  L ++   
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  171 bits (435), Expect = 3e-44
 Identities = 85/528 (16%), Positives = 155/528 (29%), Gaps = 62/528 (11%)

Query: 286 SHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPV 345
             L++ G+ P    +NN  +  L LA     G     I  L +L  L    +       +
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 346 EIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT-----GAIPERMAMGC 400
                L   M                    + L   D+  + +        I +   +  
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 401 FSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 460
              +I  L+N      I      LT L+ +    + F  +      +             
Sbjct: 426 KDTQIGNLTNRI--TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAK 478

Query: 461 LSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI---------FG 511
                     +L  L D+ + N      +P+    L  L+ L+++ N           + 
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 512 TLPSCLS-LGSIEQVHLSKNKIEG-QLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQ 569
            L         I+  ++  N +E     + +     L  LD  +N++   +        +
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVK 596

Query: 570 LSYILLANNYIEGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPT 628
           L+ + L  N IE EIP   C    +V  +  SHN L   IP      ++           
Sbjct: 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYV-------MG 647

Query: 629 WDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPT 688
               S   +     N S    +                    + S + LS N++      
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYK----------------GINASTVTLSYNEIQKFPTE 691

Query: 689 QIGYLTRIRALNLSHNNLT-------GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV- 740
                + I  + LS+N +T             + N   + ++DL +N L   +       
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRAT 750

Query: 741 -LNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKS 787
            L  L+   V+YN  S   P +    S  +           G  + + 
Sbjct: 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  110 bits (277), Expect = 6e-25
 Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 26/271 (9%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS-LEILALSNNTLQG 415
            N   + +         +   +  L ++     G +P+  A+G  + L++L+   ++   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETV 361

Query: 416 HI-------FSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRW 468
                     +   +     R+++   K   +  + L+   LL    ++ N     I + 
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL-QDAINRNPEMKPIKKD 420

Query: 469 LGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLS 528
               L    I    N +   I     +L  L+++  +N+         +     E  +  
Sbjct: 421 SRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPF-TYDNIAVDW---EDANSD 475

Query: 529 KNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEG------ 582
             K     E        L  ++L        +P+++  LP+L  + +A N          
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 583 ---EIPVQLCQLKEVRLIDLSHNNLSGHIPP 610
               +        ++++  + +NNL    P 
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEE-FPA 565

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (272), Expect = 2e-24
 Identities = 49/394 (12%), Positives = 113/394 (28%), Gaps = 79/394 (20%)

Query: 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFI 438
            ++ I   +    I +  A+     E L   N        +   +  N    + + + + 
Sbjct: 255 ANVPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLNWNFNK-ELDMWG 312

Query: 439 GEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC 498
            +    L     + GL L+                            +G +P+   QL  
Sbjct: 313 DQPGVDLDNNGRVTGLSLA------------------------GFGAKGRVPDAIGQLTE 348

Query: 499 LKVLDLSNNSIFGTLPSCLSLG-SIEQVHLSKNKIEGQLES-IIHYYPYLVTLDLSYNRL 556
           LKVL    +S   +         + +     K++I    +   + Y   L   DL  + +
Sbjct: 349 LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408

Query: 557 H-----GSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPC 611
           +       I        + + I    N I   I   + +L ++++I  +++  +      
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTY-DNIA 466

Query: 612 LVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTS 671
           +     +  Y            A        + S                       L  
Sbjct: 467 VDWEDANSDY------------AKQYENEELSWSN----------------------LKD 492

Query: 672 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG---------TIPTTFSNLKQIES 722
           ++ ++L       ++P  +  L  +++LN++ N              +        +I+ 
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 723 LDLSYNLLHGKIPPQLIV-LNTLAVFRVAYNNLS 755
             + YN L        +  +  L +    +N + 
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.5 bits (222), Expect = 2e-18
 Identities = 35/283 (12%), Positives = 76/283 (26%), Gaps = 24/283 (8%)

Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHY 542
                 I +        + LD  N   +    +          +   +    Q    +  
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN 321

Query: 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN 602
              +  L L+     G +P+ I +L +L  +    +       +   +     + +   +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 603 NLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSY 662
            +  H     ++        D            A++  P       K+++          
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDL--------LQDAINRNPEMKPI--KKDSRISLKDTQIG 431

Query: 663 YYRGRI---------LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT 713
               RI         LT +  I  + +  T +              N  +         +
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA-----VDWEDANSDYAKQYENEELS 486

Query: 714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSG 756
           +SNLK +  ++L       ++P  L  L  L    +A N    
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 1e-08
 Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 4/164 (2%)

Query: 601 HNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTK-N 659
                 ++P  L  TA     Y A+   W+        Y+    +         F  + +
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELD 309

Query: 660 MSYYYRGRILTSMS---GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSN 716
           M     G  L +     G+ L+     G +P  IG LT ++ L+   ++ T +       
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 717 LKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760
               +  +   + +        +  +          +   + P+
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 8/116 (6%)

Query: 675 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 734
            +   +    +    +    R+  L+L+     G +P     L +++ L    +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 735 P-------PQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783
                      +        R+ Y  +      R+   S   +D+   NP +  + 
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL-NLSDLLQDAINRNPEMKPIK 418

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  189 bits (481), Expect = 2e-51
 Identities = 103/516 (19%), Positives = 181/516 (35%), Gaps = 34/516 (6%)

Query: 82  ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVAS 141
            S + L LS++ L    +          LQ L +   +++        +++ L  L +  
Sbjct: 28  FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 142 NQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSP 200
           N +  +   G F  L  L++L     +L       + +L +L+ L+V++N +        
Sbjct: 86  NPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 201 LMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLT-------PK 253
             +LT++E L LS+N  Q  I    L  L ++   N  +        N +         +
Sbjct: 145 FSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDL----SLNPMNFIQPGAFKE 199

Query: 254 FQLTSISLSGYGDGGTFPKFLY------HQHDLNNADLSHLNLSGEFPNWLPENNTDLKT 307
            +L  ++L    D     K           H L   +  +     +F     E   +L  
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 308 LLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGS 367
                  L       I     L  +   +   +    V+  +Y  G  HL L    F   
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 368 IPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN--TLQGHIFSEKFNLT 425
                   K LK L  + N+   A  E   +   SLE L LS N  + +G      F  T
Sbjct: 320 PTLKL---KSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRW-LGSLLALQDIIMPNNN 484
           +LK L L  N  +  +  +      L  L    ++L          SL  L  + + + +
Sbjct: 374 SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHY 542
                   F  L  L+VL ++ NS        +   L ++  + LS+ ++E    +  + 
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANN 578
              L  L+++ N+L        D+L  L  I L  N
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  169 bits (430), Expect = 1e-44
 Identities = 107/554 (19%), Positives = 198/554 (35%), Gaps = 50/554 (9%)

Query: 29  FSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDR-MLVEVDTSFLQIVSESMASLRIL 87
             S K L +    L+  L    F  F  L+ L + R  +  ++    Q    S++ L  L
Sbjct: 27  PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTL 81

Query: 88  SLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLT-G 146
            L+ + +   ++       L  LQ+L   + +L     + + ++ +L+ LNVA N +   
Sbjct: 82  ILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 147 NFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRV----LDVSYNQLTENISSSPLM 202
             P  F  L  L  L + +N ++      L  L  + +    LD+S N +   I      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198

Query: 203 HLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLS 262
            +  + +L L NN   + +    +  L+ L+                   +  L     S
Sbjct: 199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR--------LVLGEFRNEGNLEKFDKS 249

Query: 263 GYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMP 322
                            +    L++L+   +    L    T++ +  L + ++       
Sbjct: 250 ------ALEGL--CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKD 299

Query: 323 IHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD 382
                    L++ N  F     ++    L  L  L  + N   G    S  D+  L+ LD
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLK----LKSLKRLTFTSN--KGGNAFSEVDLPSLEFLD 353

Query: 383 ISYNQLTG-AIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEI 441
           +S N L+      +   G  SL+ L LS N +   + S    L  L+ L    +      
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 442 PES-LSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNE-FCQLDCL 499
             S       L  L +S  H           L +L+ + M  N+ +     + F +L  L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 500 KVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG 558
             LDLS   +    P+  + L S++ ++++ N+++   + I      L  + L  N    
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532

Query: 559 SIP------NWIDK 566
           S P       W++K
Sbjct: 533 SCPRIDYLSRWLNK 546

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  154 bits (390), Expect = 1e-39
 Identities = 97/618 (15%), Positives = 192/618 (31%), Gaps = 132/618 (21%)

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
            S + L+++ N L       F     L+ L +   +++        +L+ L  L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLT 251
           +   ++      L+S+++L+    +    +   P+ +L  LK  N          +N   
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELN--------VAHN--- 134

Query: 252 PKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLA 311
               + S  L  Y    T  + L    DL++  +  +    +    L +      +L L+
Sbjct: 135 ---LIQSFKLPEYFSNLTNLEHL----DLSSNKIQSIY-CTDLRV-LHQMPLLNLSLDLS 185

Query: 312 NNSL----FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGS 367
            N +     G+F+       +L  L + NNF   ++       L GL    L    F   
Sbjct: 186 LNPMNFIQPGAFK-----EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 368 IPSSFADMKMLKSL--------DISYNQLTGAIPERMAMGCFSLEILALSNNTLQG-HIF 418
                 D   L+ L         ++Y          +     ++   +L + T++    F
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 419 SEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDI 478
           S  F   +L+ +     +F     +SL +      L  + N                   
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKR------LTFTSNKGGNAFS------------ 342

Query: 479 IMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI-FGTLPSC--LSLGSIEQVHLSKNKIEGQ 535
                            L  L+ LDLS N + F    S       S++ + LS N +   
Sbjct: 343 --------------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 387

Query: 536 LESIIHYYPYLVTLDLSYNRLHGSIPNWI--DKLPQLSYILLANNYIEGEIPVQLCQLKE 593
           + S       L  LD  ++ L   +  +     L  L Y+ +++ +           L  
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 594 VRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV 653
           + ++ ++ N+                                                  
Sbjct: 447 LEVLKMAGNS---------------------------------FQENFLPDIFTE----- 468

Query: 654 QFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT 713
                          L +++ +DLS  +L    PT    L+ ++ LN++ N L       
Sbjct: 469 ---------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 714 FSNLKQIESLDLSYNLLH 731
           F  L  ++ + L  N   
Sbjct: 514 FDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (350), Expect = 2e-34
 Identities = 110/606 (18%), Positives = 189/606 (31%), Gaps = 132/606 (21%)

Query: 180 TSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEI 239
            S + LD+S+N L   + S        ++ L LS                          
Sbjct: 28  FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRC------------------------ 62

Query: 240 YAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSG----EFP 295
                          ++ +I      + G +         L++  LS L L+G       
Sbjct: 63  ---------------EIQTI------EDGAY-------QSLSH--LSTLILTGNPIQSLA 92

Query: 296 NWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLM 355
                  + L+ L+    +L      PI  L+ L  L+V++N        E  + L  L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 356 HLNLSRNAFNGSIPSSFADMKMLK----SLDISYNQLTGAIPERMAMGCF---SLEILAL 408
           HL+LS N       +    +  +     SLD+S N +    P     G F    L  L L
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-----GAFKEIRLHKLTL 207

Query: 409 SNNTLQGHIFSEKF-NLTNLKRLQLDGNKF-----IGEIPES-LSKCYLLGGLYLSDNHL 461
            NN    ++       L  L+  +L   +F     + +  +S L     L        +L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 462 SG---KIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS 518
                 I      L  +    + +  +E      +      + L+L N          L 
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQ--FPTLK 323

Query: 519 LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH--GSIPNWIDKLPQLSYILLA 576
           L S++++  + NK       +    P L  LDLS N L   G           L Y+ L+
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 577 NNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN--TALSEGYYDAVAPTWDHASA 634
            N +   +      L+++  +D  H+NL       +      L                 
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD------------- 427

Query: 635 PALSY----FPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI 690
             +S+       NG   G                    L+S+  + ++ N         I
Sbjct: 428 --ISHTHTRVAFNGIFNG--------------------LSSLEVLKMAGNSFQENFLPDI 465

Query: 691 -GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV 749
              L  +  L+LS   L    PT F++L  ++ L+++ N L          L +L    +
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

Query: 750 AYNNLS 755
             N   
Sbjct: 526 HTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  134 bits (339), Expect = 5e-33
 Identities = 90/486 (18%), Positives = 153/486 (31%), Gaps = 72/486 (14%)

Query: 281 NNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFL 340
                  LN   + P+ LP      K L L+ N L            +L  LD+S    +
Sbjct: 10  ITYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-I 64

Query: 341 GHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGC 400
             I       L  L  L L+ N        +F+ +  L+ L      L   +        
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHL 123

Query: 401 FSLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPESL----SKCYLLGGLY 455
            +L+ L +++N +Q     E F NLTNL+ L L  NK        L        L   L 
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 456 LSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP-NEFCQLDCLKVLDLSNNSIFGTLP 514
           LS N ++  I       + L  + + NN     +       L  L+V  L          
Sbjct: 184 LSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR---- 238

Query: 515 SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL 574
           +  +L   ++  L        L ++      L  LD   +     I +  + L  +S   
Sbjct: 239 NEGNLEKFDKSALEG------LCNLTIEEFRLAYLDYYLD----DIIDLFNCLTNVSSFS 288

Query: 575 LANNYIEGEIPVQ-LCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHAS 633
           L +  IE           + + L++             L     +               
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS-------------- 334

Query: 634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLT--GEIPTQIG 691
                                         +    L S+  +DLS N L+  G       
Sbjct: 335 ------------------------NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 692 YLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ--LIVLNTLAVFRV 749
             T ++ L+LS N +  T+ + F  L+Q+E LD  ++ L  ++      + L  L    +
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDI 428

Query: 750 AYNNLS 755
           ++ +  
Sbjct: 429 SHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (296), Expect = 1e-27
 Identities = 66/473 (13%), Positives = 149/473 (31%), Gaps = 72/473 (15%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           + +   L+EL +  + +   +L +  ++ ++L++L +    ++  ++  D      +  L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLL 178

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
            +   L     +F+Q  +     L  L+L  +      ++   +  L  L+   +   + 
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 121 RDS---LLWCLANMTSLQVLNVASNQLTGN------FPPGFCELVLLRELYIDNNDLRGS 171
           R+      +  + +  L  L +   +L             F  L  +    + +  +   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 172 LPL-CLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLS 230
                      L +++  + Q            L S++ L  ++N      S   L +L 
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTL-------KLKSLKRLTFTSNKGGNAFSEVDLPSLE 350

Query: 231 KLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNL 290
            L                                              DL+   LS    
Sbjct: 351 FL----------------------------------------------DLSRNGLSFKGC 364

Query: 291 SGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTY 350
             +           LK L L+ N +  +       L++L  LD  ++         +   
Sbjct: 365 CSQSDFGTTS----LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
           L  L++L++S      +    F  +  L+ L ++ N         +     +L  L LS 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 411 NTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462
             L+  +    F +L++L+ L +  N+          +   L  ++L  N   
Sbjct: 480 CQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 17/93 (18%), Positives = 32/93 (34%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           +  S   +DLS N L             ++ L+LS   +       + +L  + +L L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 728 NLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760
           N +          L++L        NL+     
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  172 bits (438), Expect = 1e-44
 Identities = 116/621 (18%), Positives = 220/621 (35%), Gaps = 53/621 (8%)

Query: 29  FSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMD--RMLVEVDTSFLQIVSESMASLRI 86
            ++ + L +    ++  +    F   + L+ L +      + +D    +    ++ +LRI
Sbjct: 23  LNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR----NLPNLRI 77

Query: 87  LSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLL--WCLANMTSLQVLNVASNQL 144
           L L  S++    +       L HL EL +    L D++L      N+ +L  L+++ NQ+
Sbjct: 78  LDLGSSKIY--FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 145 TG-NFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT--SLRVLDVSYNQLTENISSSPL 201
                 P F +L  L+ +   +N +       L  L   +L    ++ N L   +S    
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 202 MHLTSIEELILSNNHFQ-IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKF-QLTSI 259
             +     ++L          +++   N S   + +         H       F  +   
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 260 SLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSF 319
             +      TF         + + DLSH  +         E   DLK L LA N +    
Sbjct: 256 DQN------TFAGLARSS--VRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLAYNKINKIA 306

Query: 320 RMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLK 379
               + L  L  L++S N  LG +       LP + +++L +N        +F  ++ L+
Sbjct: 307 DEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

Query: 380 SLDISYNQLT--------------GAIPERMAMGCFSLEILALSNNTLQG-HIFSEKFNL 424
           +LD+  N LT              G     +     +  ++ LS N L+   I      +
Sbjct: 366 TLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV 425

Query: 425 TNLKRLQLDGNKFIGEIPESL-SKCYLLGGLYLSDNHLSGKI-----PRWLGSLLALQDI 478
            +L+ L L+ N+F     +   S+   L  L+L +N L               L  LQ +
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 479 IMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLES 538
            + +N L    P  F  L  L+ L L++N +   L       ++E + +S+N++      
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPD 544

Query: 539 IIHYYPYLVTLDLSYNRLHGSIPN-WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLI 597
           +      L  LD+++N+                + + +A         V       V L 
Sbjct: 545 VF---VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPP-ADIYCVYPDSFSGVSLF 600

Query: 598 DLSHNNLSGHIPPCLVNTALS 618
            LS            +  +L 
Sbjct: 601 SLSTEGCDEEEVLKSLKFSLF 621

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  169 bits (431), Expect = 9e-44
 Identities = 125/772 (16%), Positives = 225/772 (29%), Gaps = 175/772 (22%)

Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDN 165
           L   + L +  N +R         +  LQ+L + S           F  L  LR L + +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 166 NDLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSSPLMHLTSIEELILSNNHFQIPISLE 224
           + +    P     L  L  L + +  L++  +      +L ++  L LS N  +  + L 
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYLH 141

Query: 225 PLF-NLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNA 283
           P F  L+ LK+ +           N +     +    L                  L   
Sbjct: 142 PSFGKLNSLKSID--------FSSNQIF---LVCEHELEP----------------LQGK 174

Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHI 343
            LS  +L+          +         N  L                LDVS N +   I
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL--------------EILDVSGNGWTVDI 220

Query: 344 PVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL 403
                             NA + S   S      +      ++ +               
Sbjct: 221 T-------------GNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-------------- 253

Query: 404 EILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 463
                  NT  G         ++++ L L                  L  L L+ N ++ 
Sbjct: 254 ---DPDQNTFAG------LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 464 KIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSI 522
                   L  LQ + +  N L     + F  L  +  +DL  N I          L  +
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 523 EQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEG 582
           + + L  N +     + IH+ P +  + LS N+L       +      + I L+ N +E 
Sbjct: 365 QTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLEN 415

Query: 583 -EIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFP 641
            +I   L ++  ++++ L+ N  S                                    
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFS---------------------------------SCS 442

Query: 642 PNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI-----GYLTRI 696
            + +P                        S+  + L  N L     T++       L+ +
Sbjct: 443 GDQTPSE--------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482

Query: 697 RALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSG 756
           + L L+HN L    P  FS+L  +  L L+ N L   +     +   L +  ++ N L  
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLLA 540

Query: 757 KIPDRVAQFSTFEEDSYEGNPFLCGLPLS--------KSCDDNGLTTVTTEAYTENEEGD 808
             PD    F +        N F+C   LS         +    G        Y ++  G 
Sbjct: 541 PNPD---VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV 597

Query: 809 SLIDMDS------------FLITFTVSYGIVIIGIIGVLYINPYWRRRWFYL 848
           SL  + +                F V    + + ++ +L +  +    +   
Sbjct: 598 SLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  161 bits (408), Expect = 7e-41
 Identities = 105/623 (16%), Positives = 202/623 (32%), Gaps = 116/623 (18%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
                 L+ L     +L       +I   +                       F+NL + 
Sbjct: 44  FPFLEQLQLL-----ELGSQYTPLTIDKEA-----------------------FRNLPN- 74

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
                                  LRIL L  S++    +       L HL EL +    L
Sbjct: 75  -----------------------LRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGL 109

Query: 121 RDSLL--WCLANMTSLQVLNVASNQLTG-NFPPGFCELVLLRELYIDNNDLRGSLPLCLA 177
            D++L      N+ +L  L+++ NQ+      P F +L  L+ +   +N +       L 
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169

Query: 178 NLT--SLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF 235
            L   +L    ++ N L   +S      +     ++L              + +     F
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS-----GNGWTVDITGNF 224

Query: 236 NGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFP 295
           +  I                             +    L   H +  A     N+     
Sbjct: 225 SNAI---------------------------SKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 296 NWL-PENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGL 354
           N       + ++ L L++  +F         L+ L  L+++ N  +  I  E    L  L
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNL 316

Query: 355 MHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ 414
             LNLS N       S+F  +  +  +D+  N +   I ++       L+ L L +N L 
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL- 374

Query: 415 GHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG-KIPRWLGSLL 473
               +    + ++  + L GNK +     +L+       ++LS+N L    I  +L  + 
Sbjct: 375 ----TTIHFIPSIPDIFLSGNKLVTLPKINLTANL----IHLSENRLENLDILYFLLRVP 426

Query: 474 ALQDIIMPNNNLEGPIPNEFCQ-LDCLKVLDLSNNSIFGTLPSCLS------LGSIEQVH 526
            LQ +I+  N       ++       L+ L L  N +     + L       L  ++ ++
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 527 LSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPV 586
           L+ N +      +  +   L  L L+ NRL   + +       L  + ++ N +      
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLA---P 541

Query: 587 QLCQLKEVRLIDLSHNNLSGHIP 609
                  + ++D++HN       
Sbjct: 542 NPDVFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  138 bits (348), Expect = 2e-33
 Identities = 82/521 (15%), Positives = 169/521 (32%), Gaps = 50/521 (9%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
             N   L  L L ++ +    L  S    +SLK +      +   +   +    +     
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLS 177

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
                   + +       + M   R + L    ++ N            +       N +
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW---------TVDITGNFSNAI 228

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVL--LRELYIDNNDLRGSLPLCLAN 178
             S  + L     +       + +       F  L    +R L + +  +          
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288

Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ--IPISLEPLFNLSKLKTFN 236
           L  L+VL+++YN++ + I+      L +++ L LS N        +   L  ++ +    
Sbjct: 289 LKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 237 GEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPN 296
             I    +  +  L    +L ++ L            L   H + +  +  + LSG    
Sbjct: 348 NHIAIIQDQTFKFLE---KLQTLDLRD--------NALTTIHFIPS--IPDIFLSGNKLV 394

Query: 297 WLPENNTDLKTLLLANNSLFG-SFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLM 355
            LP+ N     + L+ N L        +  +  L  L ++ N F      +  +  P L 
Sbjct: 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454

Query: 356 HLNLSRNAFNGSIPSS-----FADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
            L L  N    +  +      F  +  L+ L +++N L  ++P  +     +L  L+L++
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNS 513

Query: 411 NTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIP-RWL 469
           N L     S      NL+ L +  N+ +   P+       L  L ++ N    +      
Sbjct: 514 NRLTV--LSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTF 568

Query: 470 GSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIF 510
            + L   ++ +               + C+     S  S+F
Sbjct: 569 INWLNHTNVTIAGP---------PADIYCVYPDSFSGVSLF 600

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  113 bits (284), Expect = 7e-26
 Identities = 82/433 (18%), Positives = 144/433 (33%), Gaps = 75/433 (17%)

Query: 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKF 437
           +     +  LT  +P+ +     + E L LS N ++  + +  F  L  L+ L+L     
Sbjct: 7   RIAFYRFCNLT-QVPQVLN----TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYT 60

Query: 438 IGEI-PESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPI--PNEFC 494
              I  E+      L  L L  + +    P     L  L ++ +    L   +     F 
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 495 QLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN 554
            L  L  LDLS N I  +L    S G +                       L ++D S N
Sbjct: 121 NLKALTRLDLSKNQIR-SLYLHPSFGKL---------------------NSLKSIDFSSN 158

Query: 555 RLHGSIPNWIDKL--PQLSYILLANNYIEGEIPVQLCQLKEV------RLIDLSHNNLSG 606
           ++     + ++ L    LS+  LA N +   + V   +           ++D+S N  + 
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218

Query: 607 HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFT--TKNMSYYY 664
            I     N                  +      F    +         F          +
Sbjct: 219 DITGNFSN------------------AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 665 RGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLD 724
            G   +S+  +DLS   +          L  ++ LNL++N +       F  L  ++ L+
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 725 LSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784
           LSYNLL          L  +A   +  N++           +  ++ +++    L  L L
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHI-----------AIIQDQTFKFLEKLQTLDL 369

Query: 785 SKSCDDNGLTTVT 797
                DN LTT+ 
Sbjct: 370 R----DNALTTIH 378

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (275), Expect = 9e-25
 Identities = 75/419 (17%), Positives = 132/419 (31%), Gaps = 71/419 (16%)

Query: 354 LMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTL 413
               NL+       +P     +   + L +S+N +   +          L++L L +   
Sbjct: 11  YRFCNLT------QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYT 60

Query: 414 QGHIFSEKF-NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKI--PRWLG 470
              I  E F NL NL+ L L  +K     P++    + L  L L    LS  +    +  
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 471 SLLALQDIIMPNNNLEG-PIPNEFCQLDCLKVLDLSNNSIFGTLP---SCLSLGSIEQVH 526
           +L AL  + +  N +    +   F +L+ LK +D S+N IF         L   ++    
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 527 LSKNKIEGQLESIIHYYP------YLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI 580
           L+ N +  ++               L  LD+S N     I                +N I
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG------------NFSNAI 228

Query: 581 EGEIPVQLCQLKEVRLIDLSHNNLSGHIPP----CLVNTALSEGYYDAVAPTWDHASAPA 636
                  L     +       +N+           L  +++               S   
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSV----------RHLDLSHGF 277

Query: 637 LSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI 696
           +                 F T           L  +  ++L+ NK+          L  +
Sbjct: 278 VFSLNSR----------VFET-----------LKDLKVLNLAYNKINKIADEAFYGLDNL 316

Query: 697 RALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS 755
           + LNLS+N L     + F  L ++  +DL  N +          L  L    +  N L+
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.4 bits (214), Expect = 2e-17
 Identities = 53/321 (16%), Positives = 111/321 (34%), Gaps = 32/321 (9%)

Query: 448 CYLLGGL-YLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSN 506
           C   G + +    +L+ ++P+ L +   L    +  N +     + F  L+ L++L+L +
Sbjct: 2   CSFDGRIAFYRFCNLT-QVPQVLNTTERLL---LSFNYIRTVTASSFPFLEQLQLLELGS 57

Query: 507 NSIFGTLP--SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI--PN 562
                T+   +  +L ++  + L  +KI            +L  L L +  L  ++    
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 563 WIDKLPQLSYILLANNYIEG-EIPVQLCQLKEVRLIDLSHNNLSGHIPPC----LVNTAL 617
           +   L  L+ + L+ N I    +     +L  ++ ID S N +   +       L    L
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTL 176

Query: 618 SEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDL 677
           S              +A +L                 F    +          ++     
Sbjct: 177 SFF----------SLAANSLYSRVSVDWGKCMN---PFRNMVLEILDVSGNGWTVDITGN 223

Query: 678 SCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQ--IESLDLSYNLLHGKIP 735
             N ++      +     I       +N+      TF+ L +  +  LDLS+  +   + 
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLN 282

Query: 736 PQLIV-LNTLAVFRVAYNNLS 755
            ++   L  L V  +AYN ++
Sbjct: 283 SRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 40/248 (16%), Positives = 76/248 (30%), Gaps = 41/248 (16%)

Query: 515 SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL 574
           SC   G I             L  +         L LS+N +     +    L QL  + 
Sbjct: 1   SCSFDGRI--AFYRFCN----LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 575 LANNYIEGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPPCLVN-TALSEGYYDAVAPTWDHA 632
           L + Y    I  +  + L  +R++DL  + +    P        L E             
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL----------RL 104

Query: 633 SAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG-EIPTQIG 691
               LS                              L +++ +DLS N++    +    G
Sbjct: 105 YFCGLSDAVLKDGYFRN-------------------LKALTRLDLSKNQIRSLYLHPSFG 145

Query: 692 YLTRIRALNLSHNNLTGTIPTTFSNLKQ--IESLDLSYNLLHGKIPPQLI-VLNTLAVFR 748
            L  +++++ S N +          L+   +    L+ N L+ ++       +N      
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 749 VAYNNLSG 756
           +   ++SG
Sbjct: 206 LEILDVSG 213

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  164 bits (416), Expect = 5e-43
 Identities = 96/540 (17%), Positives = 185/540 (34%), Gaps = 54/540 (10%)

Query: 83  SLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASN 142
           +  +           T +  GL     ++ L +  N +       L    +LQVL + S+
Sbjct: 6   ASGVCDGRSRSF---TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 143 QLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLM 202
           ++       F  L  L  L + +N L          L+SL+ L++  N       +S   
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 203 HLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLS 262
           +LT+++ L + N      I       L+ L     +  +       SL     +  ++L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 263 GYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL------- 315
                     F      +   +L   NL+    + LP +        LA           
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 316 --FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTY-------LPGLMHLNLSRNAFNG 366
                    I  L ++   D + N      P E              +  L++ +     
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 367 SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTN 426
            + + ++ ++ +K + +  +++   +P   +    SLE L LS N +             
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 427 LKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS--GKIPRWLGSLLALQDIIMPNNN 484
              LQ                      L LS NHL    K    L +L  L  + +  N 
Sbjct: 360 WPSLQT---------------------LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYP 544
              P+P+     + ++ L+LS+  I   + +C+   ++E + +S N     L+S   + P
Sbjct: 399 FH-PMPDSCQWPEKMRFLNLSSTGI-RVVKTCI-PQTLEVLDVSNN----NLDSFSLFLP 451

Query: 545 YLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL 604
            L  L +S N+L  ++P+     P L  + ++ N ++        +L  ++ I L  N  
Sbjct: 452 RLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  159 bits (405), Expect = 1e-41
 Identities = 96/491 (19%), Positives = 177/491 (36%), Gaps = 41/491 (8%)

Query: 80  SMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNV 139
           + A+L++L L  SR+N  TI       L  L+ L + DN L          ++SL+ LN+
Sbjct: 48  ACANLQVLILKSSRIN--TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 140 ASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLP-LCLANLTSLRVLDVSYNQLTENIS 197
             N          F  L  L+ L I N +    +  +  A LTSL  L++    L     
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQ 164

Query: 198 SSPLMHLTSIEELILSNNHFQ--IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQ 255
           S  L  +  I  L L  +     + I  + L ++  L+  +  +     S          
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 256 LTSISLSG--YGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANN 313
           +  ++  G    D          ++ L  +++   + +         + +D+ + L    
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 314 SLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA 373
           ++             +  L +   + L +    + + L  +  + +  +       S   
Sbjct: 285 TV------------TIRRLHIPQFY-LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

Query: 374 DMKMLKSLDISYNQLTGAIPERMAM--GCFSLEILALSNNTLQ-----GHIFSEKFNLTN 426
            +K L+ LD+S N +     +  A      SL+ L LS N L+     G I      L N
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL---TLKN 388

Query: 427 LKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE 486
           L  L +  N     +P+S      +  L LS   +   +         L+ + + NNNL+
Sbjct: 389 LTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD 444

Query: 487 GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYL 546
                    L  L+ L +S N +  TLP       +  + +S+N+++   + I      L
Sbjct: 445 S-FSLF---LPRLQELYISRNKL-KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499

Query: 547 VTLDLSYNRLH 557
             + L  N   
Sbjct: 500 QKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (371), Expect = 4e-37
 Identities = 97/579 (16%), Positives = 176/579 (30%), Gaps = 96/579 (16%)

Query: 178 NLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNG 237
           +  +  V D      T    S P     +++ L LS N     I    L   + L+    
Sbjct: 3   SCDASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLIL 57

Query: 238 EIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNW 297
                     +      ++ +I      +G  F    Y    L + DLS  +LS    +W
Sbjct: 58  --------KSS------RINTI------EGDAF----YSLGSLEHLDLSDNHLSSLSSSW 93

Query: 298 LPENNTDLKTLLLANNSLFG-SFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMH 356
                + LK L L  N             L  L TL + N      I       L  L  
Sbjct: 94  F-GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGH 416
           L +   +       S   ++ +  L +  ++    + E  A    S+  L L +  L   
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARF 211

Query: 417 IFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLG------ 470
            FS          ++    +      ES ++   L    L  + +        G      
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271

Query: 471 ------------SLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFG-TLPSCL 517
                         + ++ + +P   L   +   +  L+ +K + + N+ +F        
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

Query: 518 SLGSIEQVHLSKNKIE---GQLESIIHYYPYLVTLDLSYNRLH--GSIPNWIDKLPQLSY 572
            L S+E + LS+N +     +  +    +P L TL LS N L         +  L  L+ 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 573 ILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHA 632
           + ++ N     +P      +++R ++LS   +   +  C+  T                 
Sbjct: 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTL-----------EVLDV 438

Query: 633 SAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGY 692
           S   L  F                            L  +  + +S NKL   +P     
Sbjct: 439 SNNNLDSFSLF-------------------------LPRLQELYISRNKLK-TLP-DASL 471

Query: 693 LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731
              +  + +S N L       F  L  ++ + L  N   
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (364), Expect = 3e-36
 Identities = 78/488 (15%), Positives = 166/488 (34%), Gaps = 47/488 (9%)

Query: 133 SLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQL 192
           +  V +  S   T + P G      ++ L +  N +       L    +L+VL +  +++
Sbjct: 6   ASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 193 TENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTP 252
              I       L S+E L LS+NH    +S      LS LK  N           N    
Sbjct: 63  NT-IEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLN--------LMGN---- 108

Query: 253 KFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLAN 312
                ++ ++             +  +L    + ++    E         T L  L +  
Sbjct: 109 --PYQTLGVTS---------LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 313 NSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSF 372
            SL       +  ++ +  L +  +     +       L  + +L L          S  
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 373 ADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432
              ++   +     + +  + +        L    L  + ++     +   L  L     
Sbjct: 217 PVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVE----FDDCTLNGLGDFNP 271

Query: 433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNE 492
             +  + E+     +   +  L++   +L   +      L  ++ I + N+ +     + 
Sbjct: 272 SESDVVSEL--GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329

Query: 493 FCQLDCLKVLDLSNNSI----FGTLPSCLSLGSIEQVHLSKNKIE--GQLESIIHYYPYL 546
              L  L+ LDLS N +            +  S++ + LS+N +    +   I+     L
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606
            +LD+S N  H  +P+      ++ ++ L++  I     V+ C  + + ++D+S+NNL  
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD- 444

Query: 607 HIPPCLVN 614
                L  
Sbjct: 445 SFSLFLPR 452

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (334), Expect = 2e-32
 Identities = 78/492 (15%), Positives = 156/492 (31%), Gaps = 70/492 (14%)

Query: 280 LNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFF 339
               D    + +   P+ L      +K+L L+ N +       +     L  L + ++  
Sbjct: 7   SGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR- 61

Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
           +  I  +    L  L HL+LS N  +    S F  +  LK L++  N         +   
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 400 CFSLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 458
             +L+ L + N      I    F  LT+L  L++          +SL     +  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 459 NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS 518
           +  +  +  +   L +++ + + + NL     +     +    +                
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG-------SV 234

Query: 519 LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWID--------KLPQL 570
           L       L K      L   I     +   D + N L    P+  D        +   +
Sbjct: 235 LTDESFNELLK------LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 571 SYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN-----TALSEGYYDAV 625
             + +   Y+  ++      L++V+ I + ++ +   +P            L        
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD------- 340

Query: 626 APTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLT-- 683
                      LS    N              + +          S+  + LS N L   
Sbjct: 341 -----------LSE---N----------LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

Query: 684 GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNT 743
            +    +  L  + +L++S N     +P +    +++  L+LS   +   +   +    T
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQT 432

Query: 744 LAVFRVAYNNLS 755
           L V  V+ NNL 
Sbjct: 433 LEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  105 bits (264), Expect = 9e-24
 Identities = 84/456 (18%), Positives = 158/456 (34%), Gaps = 81/456 (17%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
               ++L+ L L+ +      +     + ++L+ L +        +   DF    +L  L
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 61  VMD---------------RMLVEVDTSFLQIVS------ESMASLRILSLSYSRLNKNTI 99
            +                R +  +     +         + ++S+R L L  + L +   
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 100 LDQGLCE-LVHLQELYIRDNDLRD-------SLLWCLANMTSLQVLNVASNQLTGNFP-- 149
               + E    +++L  R + L D        LL  +  ++ ++  +   N L    P  
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 150 ------PGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMH 203
                  G  E V +R L+I    L   L    + L  ++ + V  +++   +  S   H
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQH 332

Query: 204 LTSIEELILSNNHFQ--IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISL 261
           L S+E L LS N        +         L+T             N       L S+  
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV--------LSQN------HLRSMQK 378

Query: 262 SGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPE---NNTDLKTLLLANNSLFGS 318
                G            L   +L+ L++S    + +P+       ++ L L++  +   
Sbjct: 379 ----TGEIL---------LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI--- 422

Query: 319 FRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKML 378
             +     Q L  LDVSNN            +LP L  L +SRN    ++P +     +L
Sbjct: 423 RVVKTCIPQTLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDASL-FPVL 475

Query: 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ 414
             + IS NQL  ++P+ +     SL+ + L  N   
Sbjct: 476 LVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 6e-13
 Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 36/240 (15%)

Query: 494 CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553
              D   V D  + S F ++PS L+  +++ + LS NKI       +     L  L L  
Sbjct: 2   LSCDASGVCDGRSRS-FTSIPSGLT-AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 554 NRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLV 613
           +R++    +    L  L ++ L++N++          L  ++ ++L  N     +    +
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSL 118

Query: 614 NTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRI---LT 670
              L                   L             +T++          R      LT
Sbjct: 119 FPNL-----------------TNL-------------QTLRIGNVETFSEIRRIDFAGLT 148

Query: 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 730
           S++ +++    L       +  +  I  L L  +     +      L  +  L+L    L
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (393), Expect = 1e-40
 Identities = 105/532 (19%), Positives = 178/532 (33%), Gaps = 92/532 (17%)

Query: 79  ESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLN 138
            ++A      L  + +           +L  +  L      ++   +  +  + +L  +N
Sbjct: 21  TALAEKMKTVLGKTNVTDTV----SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 139 VASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS 198
            ++NQLT         L  L ++ ++NN +    PL  ANLT+L  L +  NQ+T     
Sbjct: 75  FSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQIT---DI 127

Query: 199 SPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTS 258
            PL +LT++  L LS+N       +  L  L+ L+                         
Sbjct: 128 DPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQL----------------------- 161

Query: 259 ISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGS 318
                                  N       L+         N T L+ L +++N +  S
Sbjct: 162 --------------------SFGNQVTDLKPLA---------NLTTLERLDISSNKV--S 190

Query: 319 FRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKML 378
               +  L  L +L  +NN      P+     L  L  L+L+ N        + A +  L
Sbjct: 191 DISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNL 245

Query: 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFI 438
             LD++ NQ++   P     G   L  L L  N +     S    LT L  L+L+ N+  
Sbjct: 246 TDLDLANNQISNLAPLS---GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLE 300

Query: 439 GEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC 498
                 +S    L  L L  N++S   P  + SL  LQ +   NN +     +    L  
Sbjct: 301 D--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTN 354

Query: 499 LKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG 558
           +  L   +N I   L    +L  I Q+ L+         + ++Y   +   +   N    
Sbjct: 355 INWLSAGHNQI-SDLTPLANLTRITQLGLNDQAWTN---APVNYKANVSIPNTVKNVTGA 410

Query: 559 SI-PNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609
            I P  I      +   +  N              +   I       SG + 
Sbjct: 411 LIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  148 bits (376), Expect = 3e-38
 Identities = 96/478 (20%), Positives = 168/478 (35%), Gaps = 63/478 (13%)

Query: 128 LANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDV 187
              +       +    +T        +L  +  L  D   ++ S+   +  L +L  ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINF 75

Query: 188 SYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHY 247
           S NQLT     +PL +LT + +++++NN       + PL NL+ L               
Sbjct: 76  SNNQLT---DITPLKNLTKLVDILMNNNQIA---DITPLANLTNLTGLT--------LFN 121

Query: 248 NSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKT 307
           N      Q+T I              L +  +LN  +LS   +S           T L+ 
Sbjct: 122 N------QITDID------------PLKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQ 160

Query: 308 LLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGS 367
           L   N         P+  L  L  LD+S+N       + +   L  L  L  + N  +  
Sbjct: 161 LSFGNQVTDLK---PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDI 214

Query: 368 IPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNL 427
            P     +  L  L ++ NQL             +L  L L+NN +     +    LT L
Sbjct: 215 TP--LGILTNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISN--LAPLSGLTKL 267

Query: 428 KRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEG 487
             L+L  N+     P  L+    L  L L++N L    P  + +L  L  + +  NN+  
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 488 PIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLV 547
             P     L  L+ L   NN +   + S  +L +I  +    N+I   L  + +    + 
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQISD-LTPLAN-LTRIT 378

Query: 548 TLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
            L L+      +  N+   +   + +      +    P  +         D++ N  S
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (355), Expect = 1e-35
 Identities = 86/448 (19%), Positives = 160/448 (35%), Gaps = 61/448 (13%)

Query: 176 LANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF 235
              L       +    +T+ +       L  +  L       +   S++ +  L+ L   
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 236 NGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFP 295
           N           N      QLT I+             L +   L +  +++  ++   P
Sbjct: 74  NF--------SNN------QLTDIT------------PLKNLTKLVDILMNNNQIADITP 107

Query: 296 NWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLM 355
                N T+L  L L NN +      P+  L  L  L++S+N       +     L  L 
Sbjct: 108 L---ANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALS---GLTSLQ 159

Query: 356 HLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQG 415
            L+        +     A++  L+ LDIS N+++      +A    +LE L  +NN +  
Sbjct: 160 QLSFGNQV---TDLKPLANLTTLERLDISSNKVSD--ISVLA-KLTNLESLIATNNQISD 213

Query: 416 HIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLAL 475
              +    LTNL  L L+GN+       +L+    L  L L++N +S   P  L  L  L
Sbjct: 214 --ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 476 QDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQ 535
            ++ +  N +    P     L  L  L+L+ N +   +    +L ++  + L  N I   
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDI 324

Query: 536 LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVR 595
               +     L  L    N++  S  + +  L  ++++   +N I    P  L  L  + 
Sbjct: 325 SP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 596 LIDLSHNNLSGHIPPCLVNTALSEGYYD 623
            + L+    +        N ++     +
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  136 bits (344), Expect = 3e-34
 Identities = 107/580 (18%), Positives = 179/580 (30%), Gaps = 121/580 (20%)

Query: 181 SLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIY 240
            L    ++ +     I       L    + +L   +    +S   L  ++ L        
Sbjct: 2   PLGSATITQDTPINQIF--TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTL-------- 51

Query: 241 AETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPE 300
                                                   +   +  ++      N    
Sbjct: 52  --------------------------------------QADRLGIKSIDGVEYLNN---- 69

Query: 301 NNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLS 360
               L  +  +NN L      P+  L KL  + ++NN      P+     L  L  L L 
Sbjct: 70  ----LTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLA---NLTNLTGLTLF 120

Query: 361 RNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSE 420
            N      P    ++  L  L++S N ++         G  SL+ L+  N        + 
Sbjct: 121 NNQITDIDP--LKNLTNLNRLELSSNTISDISALS---GLTSLQQLSFGNQVTDLKPLA- 174

Query: 421 KFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIM 480
             NLT L+RL +  NK        L+K   L  L  ++N +S   P  LG L  L ++ +
Sbjct: 175 --NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228

Query: 481 PNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESII 540
             N L+         L  L  LDL+NN I   L     L  + ++ L  N+I     S +
Sbjct: 229 NGNQLKDIGT--LASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISN--ISPL 283

Query: 541 HYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLS 600
                L  L+L+ N+L    P  I  L  L+Y+ L  N I    P  +  L +++ +   
Sbjct: 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339

Query: 601 HNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNM 660
           +N +S  +      T +           W  A    +S   P  +               
Sbjct: 340 NNKVSD-VSSLANLTNI----------NWLSAGHNQISDLTPLAN--------------- 373

Query: 661 SYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI-PTTFSNLKQ 719
                   LT ++ + L+    T        Y   +   N   N     I P T S+   
Sbjct: 374 --------LTRITQLGLNDQAWTNAPVN---YKANVSIPNTVKNVTGALIAPATISDGGS 422

Query: 720 IESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759
               D+++NL            +            SG + 
Sbjct: 423 YTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (335), Expect = 4e-33
 Identities = 89/456 (19%), Positives = 156/456 (34%), Gaps = 65/456 (14%)

Query: 305 LKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAF 364
           L +  +  ++           L +     +        +       L  +  L   R   
Sbjct: 3   LGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRL-- 56

Query: 365 NGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNL 424
                     +  L  ++ S NQLT   P         L  + ++NN +     +   NL
Sbjct: 57  GIKSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIAD--ITPLANL 111

Query: 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNN 484
           TNL  L L  N+     P  L     L  L LS N +S      L  L +LQ +    N 
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQ 166

Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYP 544
           +    P     L  L+ LD+S+N +   +     L ++E +  + N+I     + +    
Sbjct: 167 VTDLKP--LANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQISD--ITPLGILT 221

Query: 545 YLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL 604
            L  L L+ N+L   I   +  L  L+ + LANN I    P  L  L ++  + L  N +
Sbjct: 222 NLDELSLNGNQLK-DIGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277

Query: 605 SGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYY 664
           S  I P    TAL+              +   L    P  +                   
Sbjct: 278 SN-ISPLAGLTALTNLE----------LNENQLEDISPISN------------------- 307

Query: 665 RGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLD 724
               L +++ + L  N ++   P  +  LT+++ L   +N ++    ++ +NL  I  L 
Sbjct: 308 ----LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLS 359

Query: 725 LSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760
             +N +    P  L  L  +    +     +    +
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  122 bits (308), Expect = 1e-29
 Identities = 94/464 (20%), Positives = 161/464 (34%), Gaps = 91/464 (19%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           +    NL ++    + L     +  + + + L  + M    +             NL  L
Sbjct: 64  VEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADI---TPLANLTNLTGL 117

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
            +    +           +++ +L  L LS + ++        L  L  LQ+L    N +
Sbjct: 118 TLFNNQITDIDPL-----KNLTNLNRLELSSNTISD----ISALSGLTSLQQLSF-GNQV 167

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
            D     LAN+T+L+ L+++SN+++        +L  L  L   NN +    P  L  LT
Sbjct: 168 TDLK--PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILT 221

Query: 181 SLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIY 240
           +L  L ++ NQL +      L  LT++ +L L+NN      +L PL  L+KL        
Sbjct: 222 NLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELK---- 271

Query: 241 AETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPE 300
                  N      Q+++IS                        L+ L            
Sbjct: 272 ----LGAN------QISNIS-----------------------PLAGL------------ 286

Query: 301 NNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLS 360
             T L  L L  N L      PI  L+ L  L +  N      PV     L  L  L   
Sbjct: 287 --TALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFFY 339

Query: 361 RNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSE 420
            N  +    SS A++  +  L   +NQ++   P         +  L L++        + 
Sbjct: 340 NNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQAWTNAPVNY 394

Query: 421 KFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGK 464
           K N++    ++      I   P ++S         ++ N  S  
Sbjct: 395 KANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 8e-19
 Identities = 67/348 (19%), Positives = 127/348 (36%), Gaps = 59/348 (16%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           L N TNL  L L  + +     + +++  +SL+ LS    V       +       LE L
Sbjct: 130 LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQVTDL----KPLANLTTLERL 182

Query: 61  VMD-------------RMLVEVDTSFLQIVS----ESMASLRILSLSYSRLNKNTILDQG 103
            +                L  +  +  QI        + +L  LSL+ ++L         
Sbjct: 183 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG----T 238

Query: 104 LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI 163
           L  L +L +L + +N + +  L  L+ +T L  L + +NQ++         L  L  L +
Sbjct: 239 LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLEL 294

Query: 164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISL 223
           + N L    P+   NL +L  L + +N ++     SP+  LT ++ L   NN      SL
Sbjct: 295 NENQLEDISPIS--NLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNNKVSDVSSL 349

Query: 224 EPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSG---------YGDGGTFPKFL 274
             L N++ L   + +I     S    L    ++T + L+          Y    + P  +
Sbjct: 350 ANLTNINWLSAGHNQI-----SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

Query: 275 YHQHDL--------NNADLSHLNLSGEFPNWLPENNTDLKTLLLANNS 314
            +            +    +  +++   P++  E +      +     
Sbjct: 405 KNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKG 452

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.1 bits (175), Expect = 5e-13
 Identities = 54/287 (18%), Positives = 98/287 (34%), Gaps = 52/287 (18%)

Query: 470 GSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSK 529
           G L +    I  +  +     +    L       L   ++     S   L  +  +   +
Sbjct: 1   GPLGSA--TITQDTPINQIFTDT--ALAEKMKTVLGKTNV-TDTVSQTDLDQVTTLQADR 55

Query: 530 NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLC 589
             I+  ++ +  Y   L  ++ S N+L    P  +  L +L  IL+ NN I    P  L 
Sbjct: 56  LGIKS-IDGV-EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA 109

Query: 590 QLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGK 649
            L  +  + L +N ++  I P    T L+              S+  +S           
Sbjct: 110 NLTNLTGLTLFNNQIT-DIDPLKNLTNLNRLE----------LSSNTISDISALSG---- 154

Query: 650 EETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT 709
                              LTS+  +    N++T   P  +  LT +  L++S N ++  
Sbjct: 155 -------------------LTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD- 191

Query: 710 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSG 756
             +  + L  +ESL  + N +    P  L +L  L    +  N L  
Sbjct: 192 -ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  138 bits (350), Expect = 5e-35
 Identities = 96/542 (17%), Positives = 163/542 (30%), Gaps = 104/542 (19%)

Query: 77  VSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLAN------ 130
           ++    S   L       +  T +      +    E Y   ++   +             
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 131 -------MTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLR 183
                        L + +  L+ + P        L  L    N L   LP    +L SL 
Sbjct: 63  SRLRDCLDRQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLL 117

Query: 184 VLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAET 243
           V + +   L++            +E L +SNN  +    L  L N S LK  +       
Sbjct: 118 VDNNNLKALSDLPP--------LLEYLGVSNNQLE---KLPELQNSSFLKIID------- 159

Query: 244 ESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNT 303
               NSL                    P        L      +  L  E P    +N  
Sbjct: 160 -VDNNSLK-----------------KLPDLPPS---LEFIAAGNNQLE-ELPEL--QNLP 195

Query: 304 DLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNA 363
            L  +   NNSL    +        L ++   NN  L  +P E+   LP L  +    N 
Sbjct: 196 FLTAIYADNNSL----KKLPDLPLSLESIVAGNN-ILEELP-ELQN-LPFLTTIYADNNL 248

Query: 364 FNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFN 423
              ++P        L++L++  N LT  +PE       SL  L +S N     +      
Sbjct: 249 LK-TLPDLPPS---LEALNVRDNYLT-DLPE----LPQSLTFLDVSENIFS-GLSEL--- 295

Query: 424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNN 483
             NL  L    N+ I  + +       L  L +S+N L  ++P        L+ +I   N
Sbjct: 296 PPNLYYLNASSNE-IRSLCDLPPS---LEELNVSNNKLI-ELPALPPR---LERLIASFN 347

Query: 484 NLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYY 543
           +L   +P        LK L +  N +    P            +   ++   L  +    
Sbjct: 348 HLAE-VPELPQN---LKQLHVEYNPL-REFPDIPE-------SVEDLRMNSHLAEVPELP 395

Query: 544 PYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNN 603
             L  L +  N L    P+  + +  L    + +  +            ++      H++
Sbjct: 396 QNLKQLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 604 LS 605
             
Sbjct: 452 HH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  126 bits (319), Expect = 4e-31
 Identities = 92/530 (17%), Positives = 177/530 (33%), Gaps = 88/530 (16%)

Query: 204 LTSIEELILSNNHFQ-IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLS 262
            T ++E +  +++   +P+  E + + ++      E             P        ++
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEW--------ERNAPPGNGEQREMA 61

Query: 263 GYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMP 322
                      +    D  +     L L+    + LPE    L++L+ + NSL       
Sbjct: 62  -----------VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSL-TELPEL 109

Query: 323 IHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD 382
              L+ L   + +           +    P L +L +S N     +P    +   LK +D
Sbjct: 110 PQSLKSLLVDNNNLK--------ALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIID 159

Query: 383 ISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIP 442
           +  N L   +P+       SLE +A  NN L+     E  NL  L  +  D N  + ++P
Sbjct: 160 VDNNSLK-KLPDLPP----SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS-LKKLP 211

Query: 443 ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL 502
           +       L  +   +N L       L +L  L  I   NN L+  +P+    L   + L
Sbjct: 212 DLPLS---LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPPSL---EAL 262

Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562
           ++ +N +        SL  ++      + +     +       L  L+ S N +  S+  
Sbjct: 263 NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIR-SLC- 313

Query: 563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN-TALSEGY 621
             D  P L  + ++NN +  E+P    +L+    +  S N+L+  +P    N   L    
Sbjct: 314 --DLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLKQL---- 362

Query: 622 YDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNK 681
                    H     L  FP     +           N        +  ++  + +  N 
Sbjct: 363 ---------HVEYNPLREFPDIPESVED------LRMNSHLAEVPELPQNLKQLHVETNP 407

Query: 682 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731
           L  E P     +     L ++   +            ++E     ++  H
Sbjct: 408 LR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  126 bits (319), Expect = 4e-31
 Identities = 96/479 (20%), Positives = 157/479 (32%), Gaps = 98/479 (20%)

Query: 149 PPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHL---- 204
            P       L+E    +++L   +P+   N+ S      ++++   N             
Sbjct: 4   NPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 205 --------TSIEELILSNNHFQ-IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQ 255
                       EL L+N     +P   E   +L  L               NSLT    
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLP---ELPPHLESLVA-----------SCNSLT---- 104

Query: 256 LTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL 315
                          P+       L   + +           L +    L+ L ++NN L
Sbjct: 105 -------------ELPELPQSLKSLLVDNNNL--------KALSDLPPLLEYLGVSNNQL 143

Query: 316 FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADM 375
                  +     L  +DV NN  L  +P    +    L  +    N     +P    ++
Sbjct: 144 --EKLPELQNSSFLKIIDVDNNS-LKKLPDLPPS----LEFIAAGNNQLE-ELPE-LQNL 194

Query: 376 KMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGN 435
             L ++    N L   +P+       SLE +   NN L      E  NL  L  +  D N
Sbjct: 195 PFLTAIYADNNSLK-KLPD----LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNN 247

Query: 436 KFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQ 495
             +  +P+       L  L + DN+L+  +P    SL  L       + L    PN    
Sbjct: 248 L-LKTLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN---- 298

Query: 496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNR 555
              L  L+ S+N I  +L       S+E++++S N    +L  +    P L  L  S+N 
Sbjct: 299 ---LYYLNASSNEI-RSLCD--LPPSLEELNVSNN----KLIELPALPPRLERLIASFNH 348

Query: 556 LHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
           L   +P     L QL    +  N +  E P     ++     DL  N+    +P    N
Sbjct: 349 LA-EVPELPQNLKQLH---VEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQN 397

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  121 bits (305), Expect = 3e-29
 Identities = 96/472 (20%), Positives = 166/472 (35%), Gaps = 99/472 (20%)

Query: 301 NNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYL--------- 351
           +NT L+  L  +++L     +    ++       + + +  + P   G            
Sbjct: 9   SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 352 ---PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILAL 408
                   L L+    + S+P        L+SL  S N LT  +PE       SL +   
Sbjct: 68  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQ-SLKSLLVDNN 121

Query: 409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRW 468
           +   L             L+ L +  N+ + ++PE L     L  + + +N L  K+P  
Sbjct: 122 NLKALSD-------LPPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNSLK-KLPDL 171

Query: 469 LGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLS 528
             SL  +      NN LE     E   L  L  +   NNS+   LP      S+E +   
Sbjct: 172 PPSLEFIA---AGNNQLE--ELPELQNLPFLTAIYADNNSL-KKLPD--LPLSLESIVAG 223

Query: 529 KNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQL 588
            N +E +L  + +  P+L T+    N L  ++P+     P L  + + +NY+  ++P   
Sbjct: 224 NNILE-ELPELQNL-PFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYLT-DLPELP 276

Query: 589 CQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMG 648
             L  + + +   + LS  +PP L     S                  +           
Sbjct: 277 QSLTFLDVSENIFSGLSE-LPPNLYYLNASSN---------------EIRSLCDL----- 315

Query: 649 KEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG 708
                                 S+  +++S NKL  E+P     L R   L  S N+L  
Sbjct: 316 --------------------PPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA- 350

Query: 709 TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760
            +P    NLK    L + YN L  + P     +  L +     N+   ++P+
Sbjct: 351 EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPE 393

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (303), Expect = 5e-29
 Identities = 102/517 (19%), Positives = 170/517 (32%), Gaps = 102/517 (19%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGA----LHGQDFHEF-- 54
             N  +  E     S+               +    +R C+ + A    L+         
Sbjct: 30  AENVKSKTEYYNAWSEW-ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88

Query: 55  --KNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQE 112
              +LE LV          + L  + E   SL+ L +  + L   + L         L+ 
Sbjct: 89  LPPHLESLVASC-------NSLTELPELPQSLKSLLVDNNNLKALSDL------PPLLEY 135

Query: 113 LYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL 172
           L + +N L    L  L N + L++++V +N L    P        L  +   NN L   L
Sbjct: 136 LGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLE-EL 188

Query: 173 PLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKL 232
           P  L NL  L  +    N L +           S+E ++  NN  +    L+ L  L+ +
Sbjct: 189 P-ELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILEELPELQNLPFLTTI 242

Query: 233 KTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSG 292
                          N L                  T P             L  LN+  
Sbjct: 243 YA-----------DNNLLK-----------------TLPDLP--------PSLEALNVRD 266

Query: 293 EFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLP 352
            +   LPE    L  L ++ N   G   +P      L  L+ S+N  +  +        P
Sbjct: 267 NYLTDLPELPQSLTFLDVSENIFSGLSELP----PNLYYLNASSN-EIRSLCDL----PP 317

Query: 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNT 412
            L  LN+S N     +P+       L+ L  S+N L   +PE       +L+ L +  N 
Sbjct: 318 SLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPELPQ----NLKQLHVEYNP 368

Query: 413 LQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSL 472
           L+        ++ +L+      N  + E+PE       L  L++  N L  + P    S+
Sbjct: 369 LR-EFPDIPESVEDLRM-----NSHLAEVPELPQN---LKQLHVETNPLR-EFPDIPESV 418

Query: 473 LALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI 509
             L+   M +  +  P        D L+     ++  
Sbjct: 419 EDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (290), Expect = 2e-27
 Identities = 91/512 (17%), Positives = 171/512 (33%), Gaps = 115/512 (22%)

Query: 284 DLSHLNLSG-EFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGH 342
             +    +  E+    P  N + + + +         R+     ++   L+++N   L  
Sbjct: 35  SKTEYYNAWSEWERNAPPGNGEQREMAV--------SRLRDCLDRQAHELELNNLG-LSS 85

Query: 343 IPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS 402
           +P         L  L  S N+    +P     +K L   + +   L+   P         
Sbjct: 86  LPELPPH----LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP--------L 132

Query: 403 LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462
           LE L +SNN L+     E  N + LK + +D N  + ++P+       L  +   +N L 
Sbjct: 133 LEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNS-LKKLPDLPPS---LEFIAAGNNQLE 186

Query: 463 GKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSI 522
            ++P  L +L  L  I   NN+L+  +P+    L   + +   NN +   LP   +L  +
Sbjct: 187 -ELPE-LQNLPFLTAIYADNNSLKK-LPDLPLSL---ESIVAGNNIL-EELPELQNLPFL 239

Query: 523 EQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKL--------------- 567
             ++   N ++   +      P L  L++  N L   +P     L               
Sbjct: 240 TTIYADNNLLKTLPDLP----PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSE 294

Query: 568 --PQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN-TALSEGYYDA 624
             P L Y+  ++N I   +      L+E   +++S+N L   +P        L       
Sbjct: 295 LPPNLYYLNASSNEIR-SLCDLPPSLEE---LNVSNNKLI-ELPALPPRLERL------- 342

Query: 625 VAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG 684
                  AS   L+  P                             ++  + +  N L  
Sbjct: 343 ------IASFNHLAEVPEL-------------------------PQNLKQLHVEYNPLR- 370

Query: 685 EIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 744
           E P     +      +L  N+    +P    NLK    L +  N L  + P    +  ++
Sbjct: 371 EFPDIPESVE-----DLRMNSHLAEVPELPQNLK---QLHVETNPLR-EFPD---IPESV 418

Query: 745 AVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGN 776
              R+    +              E+D +E +
Sbjct: 419 EDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.0 bits (198), Expect = 7e-16
 Identities = 59/354 (16%), Positives = 108/354 (30%), Gaps = 80/354 (22%)

Query: 422 FNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMP 481
            + T L+      +  + E+P            Y + +      P   G    +    + 
Sbjct: 8   VSNTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIE------GQ 535
           +                   L+L+N  +  +LP       +E +  S N +         
Sbjct: 67  DCLDRQ-----------AHELELNNLGL-SSLPE--LPPHLESLVASCNSLTELPELPQS 112

Query: 536 LESIIHYY----------PYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIP 585
           L+S++             P L  L +S N+L   +P  +     L  I + NN ++ ++P
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLP 169

Query: 586 VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGS 645
                L+    I   +N L   +P       L          T  +A   +L   P    
Sbjct: 170 DLPPSLEF---IAAGNNQLE-ELPELQNLPFL----------TAIYADNNSLKKLPDL-- 213

Query: 646 PMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN 705
                                    S+  I    N L      ++  L  +  +   +N 
Sbjct: 214 -----------------------PLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNL 248

Query: 706 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759
           L  T+P    +L+   +L++  N L   +P     L  L V    ++ LS   P
Sbjct: 249 LK-TLPDLPPSLE---ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.5 bits (181), Expect = 1e-13
 Identities = 55/319 (17%), Positives = 103/319 (32%), Gaps = 69/319 (21%)

Query: 442 PESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKV 501
           P ++S  +L        ++L+ ++P    ++ +  +     +  E   P    +   + V
Sbjct: 5   PRNVSNTFLQE-PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 502 LDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP 561
             L +                 ++ L+       L S+    P+L +L  S N L   +P
Sbjct: 63  SRLRDCL----------DRQAHELELNNL----GLSSLPELPPHLESLVASCNSLT-ELP 107

Query: 562 NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGY 621
                L  L         +  ++P  L  L       +S+N L   +P    ++ L    
Sbjct: 108 ELPQSLKSLLVDNNNLKALS-DLPPLLEYL------GVSNNQLE-KLPELQNSSFL---- 155

Query: 622 YDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNK 681
                         +L   P                             S+  I    N+
Sbjct: 156 ------KIIDVDNNSLKKLPDL-------------------------PPSLEFIAAGNNQ 184

Query: 682 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL 741
           L  E+P ++  L  + A+   +N+L   +P    +L   ES+    N+L  +  P+L  L
Sbjct: 185 LE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNIL--EELPELQNL 236

Query: 742 NTLAVFRVAYNNLSGKIPD 760
             L       N L   +PD
Sbjct: 237 PFLTTIYADNNLLK-TLPD 254

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  138 bits (350), Expect = 5e-35
 Identities = 63/387 (16%), Positives = 128/387 (33%), Gaps = 20/387 (5%)

Query: 346 EIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEI 405
           EI           ++ ++   ++ S       +K LD+S N L+  I          LE+
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLEL 62

Query: 406 LALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKI 465
           L LS+N L      +  +L+ L+ L L+ N  + E+    S    +  L+ ++N++S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNY-VQELLVGPS----IETLHAANNNIS-RV 114

Query: 466 PRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIE 523
                     ++I + NN +      +      ++ LDL  N I     + L  S  ++E
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 524 QVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGE 583
            ++L  N I   ++  +  +  L TLDLS N+L   +         +++I L NN +   
Sbjct: 173 HLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 584 IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPN 643
           I   L   + +   DL  N           +                  +          
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK--KLTGQNEEECTVP 286

Query: 644 GSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 703
                     +      +           + +    ++    +  +     R R ++   
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALK 345

Query: 704 NNLTGTIPTTFSNLKQIESLDLSYNLL 730
                 I       +   +L+     L
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  137 bits (346), Expect = 2e-34
 Identities = 69/483 (14%), Positives = 150/483 (31%), Gaps = 52/483 (10%)

Query: 130 NMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSY 189
           N    ++  V  + L             ++EL +  N L       LA  T L +L++S 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 190 NQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNS 249
           N L E   +  L  L+++  L L+NN+ Q    L    ++  L            +  N 
Sbjct: 68  NVLYE---TLDLESLSTLRTLDLNNNYVQ---ELLVGPSIETL-----------HAANN- 109

Query: 250 LTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLL 309
                 ++ +S S                   N  L++  ++    +      + ++ L 
Sbjct: 110 -----NISRVSCS------RGQG-------KKNIYLANNKIT-MLRDLDEGCRSRVQYLD 150

Query: 310 LANNSLFG-SFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSI 368
           L  N +   +F         L  L++  N F+  +  ++      L  L+LS N     +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV--VFAKLKTLDLSSNKLA-FM 206

Query: 369 PSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLK 428
              F     +  + +  N+L   I + +     +LE   L  N          F   N +
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRDFFSKNQR 263

Query: 429 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQ----DIIMPNNN 484
              +          ++  +C +    +            +   L+AL+     ++    +
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYY 543
               +  E       + +D         +        +   +   K  ++ Q+ +    +
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383

Query: 544 PYLVTLDLSYNRLHGSIPNWIDKLPQLSYI-LLANNYIEGEIPVQLCQLKEVRLIDLSHN 602
             L             + +  ++   L  +  +   Y E  +  Q  Q   +R  D+  +
Sbjct: 384 AELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

Query: 603 NLS 605
             +
Sbjct: 443 KET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (331), Expect = 2e-32
 Identities = 70/460 (15%), Positives = 140/460 (30%), Gaps = 76/460 (16%)

Query: 152 FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELI 211
                  +   + ++ L+ +L     +  +++ LD+S N L++ IS++ L   T +E L 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLN 64

Query: 212 LSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFP 271
           LS+N     + LE L  L  L                                       
Sbjct: 65  LSSNVLYETLDLESLSTLRTL--------------------------------------- 85

Query: 272 KFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLAT 331
                  DLNN  +  L                ++TL  ANN++    R+     Q    
Sbjct: 86  -------DLNNNYVQEL-----------LVGPSIETLHAANNNI---SRVSCSRGQGKKN 124

Query: 332 LDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG-SIPSSFADMKMLKSLDISYNQLTG 390
           + ++NN  +  +          + +L+L  N  +  +     A    L+ L++ YN +  
Sbjct: 125 IYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 391 AIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL 450
            +  ++      L+ L LS+N L   +  E  +   +  + L  NK +  I ++L     
Sbjct: 183 DVKGQVVFA--KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQN 238

Query: 451 LGGLYLSDNHLS-GKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI 509
           L    L  N    G +  +      +Q +      ++        +     +        
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 510 ----FGTLPSCLSLGSIEQVHLSKNKIE-GQLESIIHYYPYLVTLDLSYNRLHGSIPNWI 564
                      ++L   E   LS    E  +LE           +D    +    I    
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVT 356

Query: 565 DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL 604
            +      +      ++ ++        E+          
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (265), Expect = 4e-24
 Identities = 49/308 (15%), Positives = 96/308 (31%), Gaps = 49/308 (15%)

Query: 438 IGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLD 497
           I EI ++ ++        ++D+ L   +     S   ++++ +  N L      +     
Sbjct: 2   IHEIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 498 CLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
            L++L+LS+N ++       SL ++  + L+ N +       +   P + TL  + N + 
Sbjct: 59  KLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

Query: 558 GSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN--T 615
             +     +      I LANN I     +       V+ +DL  N +       L     
Sbjct: 113 -RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 616 ALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGI 675
            L             +     +                                  +  +
Sbjct: 170 TL----------EHLNLQYNFIYDVKGQVV-----------------------FAKLKTL 196

Query: 676 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735
           DLS NKL   +  +      +  ++L +N L   I       + +E  DL  N  H    
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 736 PQLIVLNT 743
                 N 
Sbjct: 255 RDFFSKNQ 262

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 97.2 bits (242), Expect = 3e-21
 Identities = 53/406 (13%), Positives = 115/406 (28%), Gaps = 33/406 (8%)

Query: 2   HNFTNLEELILVESDLHVSQLLQSI-ASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
            N    +   +  +D  + Q L S+  S  ++K L + G  L   +   D   F  LE L
Sbjct: 7   QNGNRYKIEKV--TDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELL 63

Query: 61  VMD-------------RMLVEVDTSFLQIVS-ESMASLRILSLSYSRLNKNTILDQGLCE 106
            +                L  +D +   +       S+  L  + + +   + +      
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI---SRVSCSR-- 118

Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG-NFPPGFCELVLLRELYIDN 165
               + +Y+ +N +           + +Q L++  N++   NF         L  L +  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 166 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ-IPISLE 224
           N +   +         L+ LD+S N+L   +          +  + L NN    I  +L 
Sbjct: 179 NFIY-DVKG-QVVFAKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLVLIEKALR 234

Query: 225 PLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD-GGTFPKFLYHQHDLNNA 283
              NL               +  +  +   ++ +++        G   +        +  
Sbjct: 235 FSQNLEHFDLRGNGF--HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHI 343
                +L   F + L         LL    S             +   +D         +
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE-QYRTV 351

Query: 344 PVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT 389
             ++       + L   + A +  + +       L           
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 25/221 (11%), Positives = 62/221 (28%), Gaps = 41/221 (18%)

Query: 536 LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVR 595
           +  I           ++ + L  ++ +       +  + L+ N +       L    ++ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 596 LIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQF 655
           L++LS N L          + L               +   +                  
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTL----------RTLDLNNNYVQELLV------------- 97

Query: 656 TTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFS 715
                          S+  +  + N ++  +          + + L++N +T        
Sbjct: 98  -------------GPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEG 141

Query: 716 NLKQIESLDLSYNLLHGKIPPQLIV-LNTLAVFRVAYNNLS 755
              +++ LDL  N +      +L    +TL    + YN + 
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 6e-08
 Identities = 33/257 (12%), Positives = 81/257 (31%), Gaps = 18/257 (7%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
               + ++ L L  +++      +  AS  +L++L+++   +   + GQ    F  L+ L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTL 196

Query: 61  VMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDND 119
            +    L  +   F     +S A +  +SL     NK  ++++ L    +L+   +R N 
Sbjct: 197 DLSSNKLAFMGPEF-----QSAAGVTWISLRN---NKLVLIEKALRFSQNLEHFDLRGNG 248

Query: 120 LRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANL 179
                L       + +V  VA   +         E  +    +                L
Sbjct: 249 FHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 180 TSLRVLDVSYNQLTENISS---SPLMHLTSIEELILSNNHFQ--IPISLEPLFNLSKLKT 234
            +L+  + +      + +        +     E+      ++  I            L+ 
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 235 FNGEIYAETESHYNSLT 251
               +  +  +   +  
Sbjct: 368 KKKALDEQVSNGRRAHA 384

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 26/218 (11%), Positives = 57/218 (26%), Gaps = 9/218 (4%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           L    NLE   L  +  H   L    +    ++ ++ +       L GQ+  E       
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV---KKLTGQNEEECTVPTLG 289

Query: 61  VMDRM-LVEVDTSFLQ-IVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDN 118
                   ++   F   +++       +LS      ++   L+         +E+     
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQ---GSETERLECERENQARQREIDALKE 346

Query: 119 DLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLAN 178
             R  +        +   L      L      G      L          +  L      
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEE 405

Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNH 216
            + L++L     +  E       +   +I +  +  + 
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 13/71 (18%), Positives = 26/71 (36%)

Query: 686 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLA 745
           I        R +   ++ ++L   + +   +   ++ LDLS N L       L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 746 VFRVAYNNLSG 756
           +  ++ N L  
Sbjct: 62  LLNLSSNVLYE 72

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (331), Expect = 2e-33
 Identities = 80/377 (21%), Positives = 140/377 (37%), Gaps = 32/377 (8%)

Query: 110 LQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLR 169
              L      +    ++  A++       +    +T        EL  + +L +    + 
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 170 GSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNL 229
            S+   +  LT+L  L+++ NQ+T     SPL +L  +  L +  N      +L+ L NL
Sbjct: 58  -SIQ-GIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKITDISALQNLTNL 112

Query: 230 SKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLN 289
            +L      I     S  + L    ++ S++L       +    L +   LN   ++   
Sbjct: 113 RELYLNEDNI-----SDISPLANLTKMYSLNLG-ANHNLSDLSPLSNMTGLNYLTVTESK 166

Query: 290 LSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGT 349
           +    P     N TDL +L L  N +      P+  L  L       N      PV    
Sbjct: 167 VKDVTPI---ANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQITDITPVA--- 218

Query: 350 YLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALS 409
            +  L  L +  N      P   A++  L  L+I  NQ++     +       L++L + 
Sbjct: 219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVK---DLTKLKMLNVG 273

Query: 410 NNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWL 469
           +N +     S   NL+ L  L L+ N+   E  E +     L  L+LS NH++   P  L
Sbjct: 274 SNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329

Query: 470 GSLLALQDIIMPNNNLE 486
            SL  +      N  ++
Sbjct: 330 ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (326), Expect = 1e-32
 Identities = 74/427 (17%), Positives = 145/427 (33%), Gaps = 82/427 (19%)

Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE 238
             +L  L    NQ+       P   L      +L        ++ E L +++KL      
Sbjct: 2   AATLATLPAPINQI------FPDADLAEGIRAVLQKASVTDVVTQEELESITKL------ 49

Query: 239 IYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWL 298
                                                    +    ++ +       N  
Sbjct: 50  ----------------------------------------VVAGEKVASIQGIEYLTN-- 67

Query: 299 PENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLN 358
                 L+ L L  N +      P+  L KL  L +  N  +  I   +   L  L  L 
Sbjct: 68  ------LEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNK-ITDIS-ALQN-LTNLRELY 116

Query: 359 LSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF 418
           L+ +  +   P   A++  + SL++  N     +          L  L ++ + ++    
Sbjct: 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD--V 170

Query: 419 SEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDI 478
           +   NLT+L  L L+ N+ I +I   L+    L       N ++   P  + ++  L  +
Sbjct: 171 TPIANLTDLYSLSLNYNQ-IEDI-SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226

Query: 479 IMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLES 538
            + NN +    P     L  L  L++  N I   + +   L  ++ +++  N+I   +  
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQI-SDINAVKDLTKLKMLNVGSNQISD-ISV 282

Query: 539 IIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLID 598
           + +    L +L L+ N+L       I  L  L+ + L+ N+I    P  L  L ++   D
Sbjct: 283 LNNL-SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339

Query: 599 LSHNNLS 605
            ++  + 
Sbjct: 340 FANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (325), Expect = 1e-32
 Identities = 64/330 (19%), Positives = 127/330 (38%), Gaps = 25/330 (7%)

Query: 280 LNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFF 339
              A L   +++        E    +  L++A   +  +    I  L  L  L+++ N  
Sbjct: 24  GIRAVLQKASVTDVVT---QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQI 78

Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
               P+     L  L +L +  N    +  S+  ++  L+ L ++ + ++   P      
Sbjct: 79  TDISPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP---LAN 130

Query: 400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 459
              +  L L  N     + S   N+T L  L +  +K + ++   ++    L  L L+ N
Sbjct: 131 LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN 187

Query: 460 HLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSL 519
            +    P  L SL +L       N +    P     +  L  L + NN I   L    +L
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI-TDLSPLANL 242

Query: 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNY 579
             +  + +  N+I   + ++      L  L++  N++   I   ++ L QL+ + L NN 
Sbjct: 243 SQLTWLEIGTNQISD-INAV-KDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNNNQ 298

Query: 580 IEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609
           +  E    +  L  +  + LS N+++   P
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (318), Expect = 9e-32
 Identities = 70/403 (17%), Positives = 145/403 (35%), Gaps = 57/403 (14%)

Query: 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNT 412
           G   L       N   P   AD+       +    +T  + +       S+  L ++   
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEK 55

Query: 413 LQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSL 472
           +          LTNL+ L L+GN+ I +I   LS    L  LY+  N ++      L +L
Sbjct: 56  VAS--IQGIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNKIT--DISALQNL 109

Query: 473 LALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKI 532
             L+++ +  +N+    P     L  +  L+L  N     L    ++  +  + ++++K+
Sbjct: 110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167

Query: 533 EGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK 592
           +  +  I +    L +L L+YN++    P  +  L  L Y     N I    P  +  + 
Sbjct: 168 KD-VTPIANL-TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 593 EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEET 652
            +  + + +N ++  + P    + L+                  +S              
Sbjct: 222 RLNSLKIGNNKITD-LSPLANLSQLTWLE----------IGTNQISDINAVKD------- 263

Query: 653 VQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT 712
                           LT +  +++  N+++    + +  L+++ +L L++N L      
Sbjct: 264 ----------------LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305

Query: 713 TFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS 755
               L  + +L LS N +    P  L  L+ +     A   + 
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (301), Expect = 2e-29
 Identities = 80/415 (19%), Positives = 147/415 (35%), Gaps = 87/415 (20%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
             +       +L ++ +     + +     S+  L + G  +      Q      NLE+L
Sbjct: 18  DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVASI---QGIEYLTNLEYL 71

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
            ++   +   +        ++  L  L +     NK T +   L  L +L+ELY+ ++++
Sbjct: 72  NLNGNQITDISPL-----SNLVKLTNLYIGT---NKITDIS-ALQNLTNLRELYLNEDNI 122

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
            D  +  LAN+T +  LN+ +N    +       +  L  L +  + ++   P+  ANLT
Sbjct: 123 SD--ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTPI--ANLT 177

Query: 181 SLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIY 240
            L  L ++YNQ+      SPL  LTS+       N       + P+ N+++         
Sbjct: 178 DLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQIT---DITPVANMTR--------- 222

Query: 241 AETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNN-ADLSHLNLSGEFPNWLP 299
                          L S+ +                   N   DLS L           
Sbjct: 223 ---------------LNSLKIGN-----------------NKITDLSPL----------- 239

Query: 300 ENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNL 359
            N + L  L +  N +  S    +  L KL  L+V +N  +  I   +   L  L  L L
Sbjct: 240 ANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQ-ISDIS-VLNN-LSQLNSLFL 294

Query: 360 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ 414
           + N            +  L +L +S N +T   P         ++    +N  ++
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA---SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  115 bits (290), Expect = 5e-28
 Identities = 63/335 (18%), Positives = 123/335 (36%), Gaps = 27/335 (8%)

Query: 280 LNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFF 339
                     ++  FP+    +  +    +L   S+     +    L+ +  L V+    
Sbjct: 2   AATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEK- 55

Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
           +  I   I  YL  L +LNL+ N      P   +++  L +L I  N++T      +   
Sbjct: 56  VASIQ-GIE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQ-N 108

Query: 400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 459
             +L  L L+ + +     S   NLT +  L L  N  +      LS    L  L ++++
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTES 165

Query: 460 HLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSL 519
            +    P  + +L  L  + +  N +E   P     L  L       N I   +    ++
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI-TDITPVANM 220

Query: 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNY 579
             +  + +  NKI   L  + +    L  L++  N++   I   +  L +L  + + +N 
Sbjct: 221 TRLNSLKIGNNKITD-LSPLANL-SQLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSNQ 276

Query: 580 IEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
           I       L  L ++  + L++N L       +  
Sbjct: 277 ISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 4e-14
 Identities = 36/194 (18%), Positives = 75/194 (38%), Gaps = 19/194 (9%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           + N T+L  L L  + +     +  +AS +SL Y +     +              L  L
Sbjct: 173 IANLTDLYSLSLNYNQIED---ISPLASLTSLHYFTAYVNQITDI---TPVANMTRLNSL 226

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
            +    +   +        +++ L  L +     N+ + ++  + +L  L+ L +  N +
Sbjct: 227 KIGNNKITDLSPL-----ANLSQLTWLEIGT---NQISDIN-AVKDLTKLKMLNVGSNQI 277

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
            D  +  L N++ L  L + +NQL          L  L  L++  N +    PL  A+L+
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLS 333

Query: 181 SLRVLDVSYNQLTE 194
            +   D +   + +
Sbjct: 334 KMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.3 bits (173), Expect = 5e-13
 Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 52/304 (17%)

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
           L      ++   P     L      ++   ++   +     +L+ +  L ++   +  ++
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV-ASI 59

Query: 514 PSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYI 573
                L ++E ++L+ N+I     S +     L  L +  N++  +  + +  L  L  +
Sbjct: 60  QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLREL 115

Query: 574 LLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN-TALSEGYYDAVAPTWDHA 632
            L  + I    P  L  L ++  ++L   N +      L N T L+              
Sbjct: 116 YLNEDNISDISP--LANLTKMYSLNLG-ANHNLSDLSPLSNMTGLNYLT----------V 162

Query: 633 SAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGY 692
           +   +    P  +                       LT +  + L+ N++    P  +  
Sbjct: 163 TESKVKDVTPIAN-----------------------LTDLYSLSLNYNQIEDISP--LAS 197

Query: 693 LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYN 752
           LT +       N +T   P   +N+ ++ SL +  N +    P  L  L+ L    +  N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253

Query: 753 NLSG 756
            +S 
Sbjct: 254 QISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           L+ ++ +++  N+++      +  LT+++ LN+  N ++    +  +NL Q+ SL L+ N
Sbjct: 242 LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN 297

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759
            L  +    +  L  L    ++ N+++   P
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 4e-07
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           L  ++ + +  NK+T    + +  LT +R L L+ +N++   P   +NL ++ SL+L  N
Sbjct: 87  LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGAN 142

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759
                + P L  +  L    V  + +    P
Sbjct: 143 HNLSDLSP-LSNMTGLNYLTVTESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           LTS+       N++T   P  +  +TR+ +L + +N +T   P   +NL Q+  L++  N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSG 756
            +       +  L  L +  V  N +S 
Sbjct: 254 QISD--INAVKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           L S++ + ++  K+       I YLT +  LNL+ N +T   P   SNL ++ +L +  N
Sbjct: 43  LESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN 98

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759
            +       L  L  L    +  +N+S   P
Sbjct: 99  KI--TDISALQNLTNLRELYLNEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           LT M  ++L  N    ++   +  +T +  L ++ + +    P   +NL  + SL L+YN
Sbjct: 131 LTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759
            +    P  L  L +L  F    N ++   P
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP 216

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  134 bits (338), Expect = 3e-33
 Identities = 80/481 (16%), Positives = 166/481 (34%), Gaps = 35/481 (7%)

Query: 109 HLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNND 167
               L I  N + +     + +++ L++L ++ N++        F     L  L + +N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 168 LRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLF 227
           L   +        +L+ LD+S+N            +++ ++ L LS  H +   S+ P+ 
Sbjct: 81  LV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIA 136

Query: 228 NLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSH 287
           +L+  K     +  ET              + SL           F+        A+L  
Sbjct: 137 HLNISKVLL--VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 288 LNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEI 347
            N+     +        +   L  N  L             L  ++ + N F+    +  
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLS---------NLTLNNIETTWNSFIR---ILQ 242

Query: 348 GTYLPGLMHLNLSRNAFNGSIPSSFAD-----MKMLKSLDISYNQLTGAIPERMAMGCFS 402
             +   + + ++S     G +     D     +K L    +  +         +     +
Sbjct: 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSN 301

Query: 403 LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462
           + I   + +  +         ++    L    N     + E+      L  L L  N L 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 463 GKIPRWLG---SLLALQDIIMPNNNLEGPIPNEFC-QLDCLKVLDLSNNSIFGTLPSCLS 518
            ++ +       + +LQ + +  N++        C     L  L++S+N +  T+  CL 
Sbjct: 362 -ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL- 419

Query: 519 LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN-WIDKLPQLSYILLAN 577
              I+ + L  NKI+  +   +     L  L+++ N+L  S+P+   D+L  L  I L  
Sbjct: 420 PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477

Query: 578 N 578
           N
Sbjct: 478 N 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 99.6 bits (248), Expect = 6e-22
 Identities = 87/468 (18%), Positives = 158/468 (33%), Gaps = 32/468 (6%)

Query: 24  QSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMAS 83
             I S S L+ L +    ++  L    F   + LE+L +           ++I      +
Sbjct: 39  SDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSH------NKLVKISCHPTVN 91

Query: 84  LRILSLS---YSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVA 140
           L+ L LS   +  L            +  L+ L +    L  S +  +A++   +VL V 
Sbjct: 92  LKHLDLSFNAFDALPICKEFGN----MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147

Query: 141 SNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSP 200
                    P    L       +            + +++   V ++  + +   +  + 
Sbjct: 148 GETYGEKEDPEG--LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 201 LMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSIS 260
             +  SI   + +N              L+ ++T         +  +++    F ++++ 
Sbjct: 206 CSYFLSILAKLQTNPKLS-------NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 261 LSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFR 320
           L G  D   F         L+   +          +++ E  +++       +       
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHM 317

Query: 321 MPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFN--GSIPSSFADMKML 378
           +    +     LD SNN  L     E   +L  L  L L  N       I      MK L
Sbjct: 318 LCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFI 438
           + LDIS N ++    +       SL  L +S+N L   IF        +K L L  NK I
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-RCL-PPRIKVLDLHSNK-I 433

Query: 439 GEIPESLSKCYLLGGLYLSDNHLSGKIPR-WLGSLLALQDIIMPNNNL 485
             IP+ + K   L  L ++ N L   +P      L +LQ I +  N  
Sbjct: 434 KSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.5 bits (240), Expect = 5e-21
 Identities = 79/462 (17%), Positives = 143/462 (30%), Gaps = 72/462 (15%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
              L I  N +       + +L+ LR+L +S+N++   +  S       +E L LS+N  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKL 81

Query: 218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ 277
              IS  P  NL  L                                             
Sbjct: 82  VK-ISCHPTVNLKHL--------------------------------------------- 95

Query: 278 HDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNN 337
            DL+      L +  EF N      + LK L L+   L  S  +PI  L     L V   
Sbjct: 96  -DLSFNAFDALPICKEFGNM-----SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149

Query: 338 FFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMA 397
            +           L      +L              D+ +    ++  + +   + +   
Sbjct: 150 TYGEKED---PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 398 MGCFSLEILALSNNTLQGHIFSEKFNLTN--LKRLQLDGNKFIGEIPESLSKCYLLGGLY 455
               S+     +N  L     +      N  ++ LQL  +  +     S+S   L G L 
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF--SISNVKLQGQLD 264

Query: 456 LSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI-FGTLP 514
             D   SG       SL AL    + ++    P    +     + + + + +      + 
Sbjct: 265 FRDFDYSGT------SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 515 SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI---DKLPQLS 571
               +     +  S N +   +     +   L TL L  N+L   +        ++  L 
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQ 377

Query: 572 YILLANNYIEGEIPVQLC-QLKEVRLIDLSHNNLSGHIPPCL 612
            + ++ N +  +     C   K +  +++S N L+  I  CL
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 75/440 (17%), Positives = 137/440 (31%), Gaps = 57/440 (12%)

Query: 331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 390
            +D S N  L H+P ++         LN+S+N  +    S    +  L+ L IS+N++  
Sbjct: 4   LVDRSKNG-LIHVPKDLSQKT---TILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 391 AIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKF----IGEIPESLS 446
            +   +      LE L LS+N L            NLK L L  N F    I +   ++S
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 447 KCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSN 506
           +   L  L LS  HL       +  L   + +++           E   L       L  
Sbjct: 116 Q---LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG--LQDFNTESLHI 170

Query: 507 NSIF-GTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWID 565
                      L +      +L  + I+  LE     Y   +   L  N         + 
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN-------PKLS 223

Query: 566 KLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAV 625
            L   +     N++I     V    +    + ++               T+L        
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI--- 280

Query: 626 APTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE 685
                                      V          Y   I ++M+  + + +     
Sbjct: 281 -------------------------HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 686 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV---LN 742
                  ++    L+ S+N LT T+     +L ++E+L L  N L  ++     +   + 
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMK 374

Query: 743 TLAVFRVAYNNLSGKIPDRV 762
           +L    ++ N++S       
Sbjct: 375 SLQQLDISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.7 bits (199), Expect = 6e-16
 Identities = 72/465 (15%), Positives = 151/465 (32%), Gaps = 80/465 (17%)

Query: 2   HNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLV 61
           H   NL+ L L  +      + +   + S LK+L +    L+ +          +L    
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNIS- 141

Query: 62  MDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLR 121
                V +         E    L+  +                     L  ++  + +  
Sbjct: 142 ----KVLLVLGETYGEKEDPEGLQDFNTE------------------SLHIVFPTNKEFH 179

Query: 122 DSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTS 181
             L   +  + +L++ N+                     L  +      S+   L     
Sbjct: 180 FILDVSVKTVANLELSNIKCV------------------LEDNKCSYFLSILAKLQTNPK 221

Query: 182 LRVLDVSYNQLTENISSSPLMHL--TSIEELILSNNHFQIPISLEPL-FNLSKLKTFNGE 238
           L  L ++  + T N     L  +  T++    +SN   Q  +      ++ + LK  +  
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS-- 279

Query: 239 IYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWL 298
                    + +         S         +  F     ++N  + + ++ +       
Sbjct: 280 --------IHQVVSDVFGFPQS-------YIYEIF----SNMNIKNFT-VSGTRMVHMLC 319

Query: 299 PENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIG--TYLPGLMH 356
           P   +    L  +NN L  +       L +L TL +  N  L  +       T +  L  
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQ 378

Query: 357 LNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQG 415
           L++S+N+ +        +  K L SL++S N LT  I   +      +++L L +N ++ 
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP---RIKVLDLHSNKIK- 434

Query: 416 HIFSEKFNLTNLKRLQLDGNKFIGEIPE-SLSKCYLLGGLYLSDN 459
            I  +   L  L+ L +  N+ +  +P+    +   L  ++L  N
Sbjct: 435 SIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 50/350 (14%), Positives = 96/350 (27%), Gaps = 46/350 (13%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
                           L VS    +    S++K +                     L +L
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRD--- 117
            ++ +    ++    +      ++   S+S  +L               L+ L I     
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 118 NDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLA 177
           +       +     +++ + N   +           ++     L   NN L  ++     
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 178 NLTSLRVLDVSYNQLTE-NISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
           +LT L  L +  NQL E +  +     + S+++L +S N                L + N
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 237 GEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPN 296
                      N LT                  F         L   DL    +      
Sbjct: 406 --------MSSNILTD---------------TIFRCLPPRIKVL---DLHSNKIKS---- 435

Query: 297 WLPENN---TDLKTLLLANNSL----FGSFRMPIHCLQKLATLDVSNNFF 339
            +P+       L+ L +A+N L     G F      L  L  + +  N +
Sbjct: 436 -IPKQVVKLEALQELNVASNQLKSVPDGIFDR----LTSLQKIWLHTNPW 480

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (326), Expect = 2e-32
 Identities = 75/380 (19%), Positives = 138/380 (36%), Gaps = 49/380 (12%)

Query: 84  LRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQ 143
                +      ++         L + + +  +++ +R      L +   +++LN+   Q
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 144 LTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLM 202
           +        F     +++LY+  N +R   P    N+  L VL +  N L+  +      
Sbjct: 81  IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFH 138

Query: 203 HLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLS 262
           +   +  L +SNN+ +  I  +     + L+              N      +LT + L 
Sbjct: 139 NTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQ--------LSSN------RLTHVDL- 182

Query: 263 GYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMP 322
                   P             L H N+S    + L      ++ L  ++NS+     + 
Sbjct: 183 -----SLIPS------------LFHANVSYNLLSTLA-IPIAVEELDASHNSI---NVVR 221

Query: 323 IHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD 382
                +L  L + +N  L      +    PGL+ ++LS N     +   F  M+ L+ L 
Sbjct: 222 GPVNVELTILKLQHN-NLTDTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 383 ISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIP 442
           IS N+L  A+         +L++L LS+N L  H+   +     L+ L LD N  I  + 
Sbjct: 279 ISNNRLV-ALNL-YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-IVTLK 334

Query: 443 ESLSKCYLLGGLYLSDNHLS 462
            S      L  L LS N   
Sbjct: 335 LSTHH--TLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (317), Expect = 3e-31
 Identities = 61/321 (19%), Positives = 132/321 (41%), Gaps = 22/321 (6%)

Query: 288 LNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEI 347
           +     +  +      + K +   N+++       +   +++  L++++   +  I    
Sbjct: 30  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA 88

Query: 348 GTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILA 407
             Y   +  L +  NA     P  F ++ +L  L +  N L+ ++P  +      L  L+
Sbjct: 89  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147

Query: 408 LSNN---TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGK 464
           +SNN    ++   F      T+L+ LQL  N+ +  +  SL     L    +S N LS  
Sbjct: 148 MSNNNLERIEDDTFQ---ATTSLQNLQLSSNR-LTHVDLSLIPS--LFHANVSYNLLST- 200

Query: 465 IPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQ 524
               L   +A++++   +N++         +L    +L L +N++       L+   + +
Sbjct: 201 ----LAIPIAVEELDASHNSINVVRGPVNVEL---TILKLQHNNL-TDTAWLLNYPGLVE 252

Query: 525 VHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEI 584
           V LS N++E  +         L  L +S NRL  ++  +   +P L  + L++N++   +
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 310

Query: 585 PVQLCQLKEVRLIDLSHNNLS 605
                Q   +  + L HN++ 
Sbjct: 311 ERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (316), Expect = 3e-31
 Identities = 65/337 (19%), Positives = 128/337 (37%), Gaps = 35/337 (10%)

Query: 279 DLNNADLSHLNLSG----EFPNWLPENNTDLKTLLLANNSL----FGSFRMPIHCLQKLA 330
           D+   +   +        + P  L ++   ++ L L +  +      +F         + 
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQ 96

Query: 331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 390
            L +  N  + ++P  +   +P L  L L RN  +      F +   L +L +S N L  
Sbjct: 97  KLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE- 154

Query: 391 AIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL 450
            I +       SL+ L LS+N L  H+  +   + +L    +  N        +L+    
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSYNLL-----STLAIPIA 206

Query: 451 LGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIF 510
           +  L  S N ++  +       + L  + + +NNL             L  +DLS N + 
Sbjct: 207 VEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL- 260

Query: 511 GTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLP 568
             +       +  +E++++S N++   L       P L  LDLS+N L   +     +  
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318

Query: 569 QLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
           +L  + L +N I   + +       ++ + LSHN+  
Sbjct: 319 RLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (311), Expect = 2e-30
 Identities = 63/396 (15%), Positives = 131/396 (33%), Gaps = 51/396 (12%)

Query: 93  RLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG- 151
           R  +   +D  L       +++I          +    + + +++   ++ +    P   
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL 64

Query: 152 FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELI 211
                 +  L +++  +        A   +++ L + +N +   +      ++  +  L+
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLV 123

Query: 212 LSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFP 271
           L  N     +      N  KL T +           N       L  I      +  TF 
Sbjct: 124 LERNDLSS-LPRGIFHNTPKLTTLS--------MSNN------NLERI------EDDTFQ 162

Query: 272 KFLYHQHDLNNADLSHLNLSGEFPNWLPENN-TDLKTLLLANNSLFGSFRMPIHCLQKLA 330
                        L +L LS      +  +    L    ++ N L       +     + 
Sbjct: 163 ---------ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVE 208

Query: 331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 390
            LD S+N  +  +   +      L  L L  N    +  +   +   L  +D+SYN+L  
Sbjct: 209 ELDASHN-SINVVRGPV---NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE- 261

Query: 391 AIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL 450
            I     +    LE L +SNN L   +      +  LK L L  N  +  +  +  +   
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR 319

Query: 451 LGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE 486
           L  LYL  N +   +   L +   L+++ + +N+ +
Sbjct: 320 LENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (307), Expect = 5e-30
 Identities = 62/289 (21%), Positives = 116/289 (40%), Gaps = 24/289 (8%)

Query: 326 LQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISY 385
           L     +   N+  +  +P  +      +  LNL+          +FA    ++ L + +
Sbjct: 44  LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 386 NQLTGAIPERMAMGCFSLEILALSNN---TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIP 442
           N +   +P  +      L +L L  N   +L   IF    N   L  L +  N  +  I 
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH---NTPKLTTLSMSNNN-LERIE 157

Query: 443 -ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKV 501
            ++      L  L LS N L+  +   L  + +L    +  N L             ++ 
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEE 209

Query: 502 LDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP 561
           LD S+NSI   +        +  + L  N +      +++Y P LV +DLSYN L   + 
Sbjct: 210 LDASHNSI-NVVRG-PVNVELTILKLQHNNLT-DTAWLLNY-PGLVEVDLSYNELEKIMY 265

Query: 562 NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP 610
           +   K+ +L  + ++NN +   + +    +  ++++DLSHN+L  H+  
Sbjct: 266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (301), Expect = 3e-29
 Identities = 80/419 (19%), Positives = 152/419 (36%), Gaps = 90/419 (21%)

Query: 126 WCLANMTSLQVLNVASNQLTGNFPPGFCELVL--LRELYIDNNDLRGSLPLCLANLTSLR 183
                       +V  +  T +   GF ++ L   + +   N+ +R      L +   + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 184 VLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAET 243
           +L+++  Q+ E I +    +  +I++L +  N                            
Sbjct: 73  LLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFN---------------------------- 103

Query: 244 ESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSG----EFPNWLP 299
                       +  +          F        ++    L+ L L        P  + 
Sbjct: 104 -----------AIRYL------PPHVF-------QNVPL--LTVLVLERNDLSSLPRGIF 137

Query: 300 ENNTDLKTLLLANNSL----FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLM 355
            N   L TL ++NN+L      +F+        L  L +S+N  L H+ + +   +P L 
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQ----ATTSLQNLQLSSN-RLTHVDLSL---IPSLF 189

Query: 356 HLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQG 415
           H N+S N       S+ A    ++ LD S+N +   +   +      L IL L +N L  
Sbjct: 190 HANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD 240

Query: 416 HIFSEKFNLTNLKRLQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA 474
              +   N   L  + L  N+ + +I      K   L  LY+S+N L   +  +   +  
Sbjct: 241 --TAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 475 LQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIE 533
           L+ + + +N+L   +     Q D L+ L L +NSI  TL    +  +++ + LS N  +
Sbjct: 297 LKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI-VTLKLS-THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.9 bits (226), Expect = 1e-19
 Identities = 62/355 (17%), Positives = 118/355 (33%), Gaps = 69/355 (19%)

Query: 402 SLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNH 460
               + +   T   +   E   L N K +    +  + ++P   L     +  L L+D  
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ 80

Query: 461 LSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLG 520
           +             +Q + M  N +    P+ F  +  L VL L  N +  +LP      
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLP------ 133

Query: 521 SIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI 580
                             I H  P L TL +S N L     +       L  + L++N +
Sbjct: 134 ----------------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

Query: 581 EGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYF 640
                V L  +  +   ++S+N LS  +   +    L              AS  +++  
Sbjct: 178 TH---VDLSLIPSLFHANVSYNLLS-TLAIPIAVEEL-------------DASHNSINVV 220

Query: 641 PPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALN 700
                                      +   ++ + L  N LT +    +     +  ++
Sbjct: 221 RGP------------------------VNVELTILKLQHNNLT-DTAW-LLNYPGLVEVD 254

Query: 701 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS 755
           LS+N L   +   F  ++++E L +S N L   +      + TL V  +++N+L 
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 20/188 (10%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           L     +EEL    S   ++ +         L  L ++   L           +  L  +
Sbjct: 201 LAIPIAVEELDA--SHNSINVV--RGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEV 253

Query: 61  VMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDND 119
            +    L ++           M  L  L +S +RL     L+     +  L+ L +  N 
Sbjct: 254 DLSYNELEKIMYHPFV----KMQRLERLYISNNRL---VALNLYGQPIPTLKVLDLSHNH 306

Query: 120 LRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCL-AN 178
           L   +         L+ L +  N +             L+ L + +ND   +    L  N
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWDCNSLRALFRN 362

Query: 179 LTSLRVLD 186
           +    V D
Sbjct: 363 VARPAVDD 370

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (329), Expect = 3e-32
 Identities = 68/315 (21%), Positives = 131/315 (41%), Gaps = 17/315 (5%)

Query: 302 NTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSR 361
           +   + +L           +P     +   LD+  N  +  +  +     P L  L L+ 
Sbjct: 10  SAQDRAVLCHRKRFV---AVPEGIPTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNE 65

Query: 362 NAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN---TLQGHIF 418
           N  +   P +F ++  L++L +  N+L   IP  +  G  +L  L +S N    L  ++F
Sbjct: 66  NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 419 SEKFNLTNLKRLQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQD 477
               +L NLK L++  N  +  I   + S    L  L L   +L+      L  L  L  
Sbjct: 125 Q---DLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

Query: 478 IIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL-PSCLSLGSIEQVHLSKNKIEGQL 536
           + + + N+       F +L  LKVL++S+     T+ P+CL   ++  + ++   +    
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240

Query: 537 ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQ-LCQLKEVR 595
              + +  YL  L+LSYN +     + + +L +L  I L    +   +       L  +R
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLR 299

Query: 596 LIDLSHNNLSGHIPP 610
           ++++S N L+  +  
Sbjct: 300 VLNVSGNQLT-TLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  126 bits (319), Expect = 5e-31
 Identities = 76/361 (21%), Positives = 126/361 (34%), Gaps = 63/361 (17%)

Query: 82  ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVAS 141
              R+L L  +R+   T+         HL+EL + +N +         N+ +L+ L + S
Sbjct: 32  TETRLLDLGKNRIK--TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 142 NQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSP 200
           N+L    P G F  L  L +L I  N +   L     +L +L+ L+V  N L   IS   
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRA 147

Query: 201 LMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSIS 260
              L S+E+L L   +    I  E L +L  L              +        + +I 
Sbjct: 148 FSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLR--------LRHL------NINAIR 192

Query: 261 LSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFR 320
                            + L   ++SH                +L +L + + +      
Sbjct: 193 ----------DYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHCN------ 235

Query: 321 MPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKS 380
                              L  +P     +L  L  LNLS N  +    S   ++  L+ 
Sbjct: 236 -------------------LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 381 LDISYNQLTGAIPERMAMGCFSLEILALSNN---TLQGHIFSEKFNLTNLKRLQLDGNKF 437
           + +   QL   +      G   L +L +S N   TL+  +F    ++ NL+ L LD N  
Sbjct: 277 IQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH---SVGNLETLILDSNPL 332

Query: 438 I 438
            
Sbjct: 333 A 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (312), Expect = 5e-30
 Identities = 76/309 (24%), Positives = 122/309 (39%), Gaps = 21/309 (6%)

Query: 282 NADLSHLNLSGEFPNWLPENN----TDLKTLLLANNSL----FGSFRMPIHCLQKLATLD 333
             +   L+L       L ++       L+ L L  N +     G+F    + L  L TL 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLG 86

Query: 334 VSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIP 393
           + +N  L  IP+ + T L  L  L++S N     +   F D+  LKSL++  N L   I 
Sbjct: 87  LRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YIS 144

Query: 394 ERMAMGCFSLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPE-SLSKCYLL 451
            R   G  SLE L L    L   I +E   +L  L  L+L     I  I + S  + Y L
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRL 202

Query: 452 GGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFG 511
             L +S       +       L L  + + + NL          L  L+ L+LS N I  
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-S 261

Query: 512 TLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQ 569
           T+   +   L  ++++ L   ++            YL  L++S N+L     +    +  
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 570 LSYILLANN 578
           L  ++L +N
Sbjct: 322 LETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (291), Expect = 2e-27
 Identities = 72/340 (21%), Positives = 128/340 (37%), Gaps = 47/340 (13%)

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
           T  ++L++  N++       F     L EL ++ N +    P    NL +LR L +  N+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 192 LTENISSSPLMHLTSIEELILSNNHFQI--PISLEPLFNLSKLKTFNGEIYAETESHYNS 249
           L   I       L+++ +L +S N   I      + L+NL  L+              N 
Sbjct: 92  LKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV-----------GDN- 138

Query: 250 LTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLL 309
                 L  IS           +     + L    L   NL+      L  +   L  L 
Sbjct: 139 -----DLVYIS----------HRAFSGLNSLEQLTLEKCNLTSIPTEAL-SHLHGLIVLR 182

Query: 310 LANNSLF----GSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFN 365
           L + ++      SF+     L +L  L++S+  +L  +      Y   L  L+++     
Sbjct: 183 LRHLNINAIRDYSFK----RLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHCNLT 237

Query: 366 GSIPS-SFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF-N 423
            ++P  +   +  L+ L++SYN ++  I   M      L+ + L    L   +    F  
Sbjct: 238 -AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRG 294

Query: 424 LTNLKRLQLDGNKFIGEIPESL-SKCYLLGGLYLSDNHLS 462
           L  L+ L + GN+ +  + ES+      L  L L  N L+
Sbjct: 295 LNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (284), Expect = 2e-26
 Identities = 61/286 (21%), Positives = 109/286 (38%), Gaps = 23/286 (8%)

Query: 285 LSHLNLSG----EFPNWLPENNTDLKTLLLANNSL----FGSFRMPIHCLQKLATLDVSN 336
           L  L L+             N  +L+TL L +N L     G F      L  L  LD+S 
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT----GLSNLTKLDISE 113

Query: 337 NFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGAIPER 395
           N  +  +   +   L  L  L +  N     I   +F+ +  L+ L +    LT +IP  
Sbjct: 114 NK-IVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTE 170

Query: 396 MAMGCFSLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGL 454
                  L +L L +  +   I    F  L  LK L++    ++  +  +      L  L
Sbjct: 171 ALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229

Query: 455 YLSDNHLSGKIPRW-LGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
            ++  +L+  +P   +  L+ L+ + +  N +     +   +L  L+ + L    +   +
Sbjct: 230 SITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVV 287

Query: 514 PSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
                  L  +  +++S N++    ES+ H    L TL L  N L 
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.7 bits (241), Expect = 3e-21
 Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 13/238 (5%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSI-ASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEH 59
            +N  NL  L L      +  +   +    S+L  L +    +   L    F +  NL+ 
Sbjct: 76  FNNLFNLRTLGL--RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKS 132

Query: 60  LVMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDN 118
           L +    LV +           + SL  L+L    L   +I  + L  L  L  L +R  
Sbjct: 133 LEVGDNDLVYISHRAFS----GLNSLEQLTLEKCNLT--SIPTEALSHLHGLIVLRLRHL 186

Query: 119 DLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLAN 178
           ++     +    +  L+VL ++         P     + L  L I + +L     L + +
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
           L  LR L++SYN ++  I  S L  L  ++E+ L      + +       L+ L+  N
Sbjct: 247 LVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLN 302

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           L S+  + L    LT  IPT+   +L  +  L L H N+      +F  L +++ L++S+
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 728 NLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRV 762
                 + P  +    L    + + NL+  +P   
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 13/172 (7%)

Query: 1   LHNFTNLEELILVESDLHVSQL-LQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEH 59
           L +   L  L L    L+++ +   S      LK L +        +     +   NL  
Sbjct: 172 LSHLHGLIVLRL--RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTS 228

Query: 60  LVMDRM-LVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDN 118
           L +    L  V    ++     +  LR L+LSY+ ++  TI    L EL+ LQE+ +   
Sbjct: 229 LSITHCNLTAVPYLAVR----HLVYLRFLNLSYNPIS--TIEGSMLHELLRLQEIQLVGG 282

Query: 119 DLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLR 169
            L     +    +  L+VLNV+ NQLT       F  +  L  L +D+N L 
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           L++++ +D+S NK+   +      L  +++L +  N+L       FS L  +E L L   
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162

Query: 729 LLHGKIPPQ-LIVLNTLAVFRVAYNNLSGKIPD 760
            L   IP + L  L+ L V R+ + N++  I D
Sbjct: 163 NLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRD 193

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           I T    +DL  N++      +      +  L L+ N ++   P  F+NL  + +L L  
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 728 NLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPDRV 762
           N L   IP  +   L+ L    ++ N +   + D +
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYM 123

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 17/135 (12%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           L  +  +++S       +     Y   + +L+++H NLT        +L  +  L+LSYN
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 729 LLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKS 787
            +   I   ++  L  L   ++    L           +  E  ++ G  +L  L +S  
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQLVGGQL-----------AVVEPYAFRGLNYLRVLNVS-- 304

Query: 788 CDDNGLTTVTTEAYT 802
              N LTT+    + 
Sbjct: 305 --GNQLTTLEESVFH 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  127 bits (321), Expect = 3e-32
 Identities = 60/349 (17%), Positives = 111/349 (31%), Gaps = 45/349 (12%)

Query: 276 HQHDLNNADLSHLNLSGEFP-NWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDV 334
           H H  +++   +L   G        +  +  +    A+ + + S     +          
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIETR 63

Query: 335 SNNFFLGHIPVEIGT-YLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIP 393
           +    L      +     PG + L L         P     +  L+ + I    L   +P
Sbjct: 64  TGRA-LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 394 ERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGG 453
           + M      LE L L+ N L+  + +   +L  L+ L +     + E+PE L+     G 
Sbjct: 121 DTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 454 ---------LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL 504
                    L L    +   +P  + +L  L+ + + N+ L   +      L  L+ LDL
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236

Query: 505 SNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS-YNRLHGSIPNW 563
              +     P                   G           L  L L   + L  ++P  
Sbjct: 237 RGCTALRNYPPIF----------------GGRAP-------LKRLILKDCSNLL-TLPLD 272

Query: 564 IDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCL 612
           I +L QL  + L        +P  + QL    +I +   +L   +    
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (276), Expect = 2e-26
 Identities = 63/404 (15%), Positives = 110/404 (27%), Gaps = 95/404 (23%)

Query: 123 SLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSL 182
           S      + +  + L    +       P    L   +  Y  + +         AN  + 
Sbjct: 3   SSHHHHHHSSGRENLYFQGST---ALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNP 58

Query: 183 RVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ-IPISLEPLFNLSKLKTFNGEIYA 241
           ++   +   L                 L L +      P   +  F LS L+        
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHM------ 109

Query: 242 ETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPEN 301
                                                      +    L  E P+ + + 
Sbjct: 110 ------------------------------------------TIDAAGLM-ELPDTM-QQ 125

Query: 302 NTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIG--------TYLPG 353
              L+TL LA N L  +    I  L +L  L +     L  +P  +           L  
Sbjct: 126 FAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 354 LMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTL 413
           L  L L       S+P+S A+++ LKSL I  + L+ A+   +                 
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH---------------- 226

Query: 414 QGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLL 473
                    +L  L+ L L G   +   P        L  L L D      +P  +  L 
Sbjct: 227 ---------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

Query: 474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL 517
            L+ + +        +P+   QL    ++ +  +     L    
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ-AQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (263), Expect = 1e-24
 Identities = 45/344 (13%), Positives = 100/344 (29%), Gaps = 56/344 (16%)

Query: 423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482
           + +  + L   G+  +    + LS+         +  H + +      +    Q      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 483 NNLEGPIPN-EFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH 541
             L+      E         L+L +  +    P                    +L     
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPL-PQFPDQA----------------FRLSH--- 105

Query: 542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSH 601
               L  + +    L   +P+ + +   L  + LA N +   +P  +  L  +R + +  
Sbjct: 106 ----LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 602 NNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMS 661
                 +P  L +T  S  +   V           +   P +   +              
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS---IAN------------ 204

Query: 662 YYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE 721
                  L ++  + +  + L+  +   I +L ++  L+L         P  F     ++
Sbjct: 205 -------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 722 SLDLS-YNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQ 764
            L L   + L   +P  +  L  L    +       ++P  +AQ
Sbjct: 257 RLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 2e-24
 Identities = 53/390 (13%), Positives = 106/390 (27%), Gaps = 77/390 (19%)

Query: 88  SLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGN 147
                    +T L      L   Q  Y  D +      W  AN  + Q+       L   
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALKAT 71

Query: 148 FPP-GFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTS 206
                         L + +  L    P     L+ L+ + +    L E +  + +     
Sbjct: 72  ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDT-MQQFAG 128

Query: 207 IEELILSNNHFQ-IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYG 265
           +E L L+ N  + +P S+    +L++L+                                
Sbjct: 129 LETLTLARNPLRALPASIA---SLNRLREL------------------------------ 155

Query: 266 DGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHC 325
                              +       E P  L                           
Sbjct: 156 ------------------SIRACPELTELPEPLAST----------------DASGEHQG 181

Query: 326 LQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISY 385
           L  L +L +     +  +P  I   L  L  L +  +  + ++  +   +  L+ LD+  
Sbjct: 182 LVNLQSLRLEWTG-IRSLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238

Query: 386 NQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL 445
                  P     G   L+ L L + +    +  +   LT L++L L G   +  +P  +
Sbjct: 239 CTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 446 SKCYLLGGLYLSDNHLSGKIPRWLGSLLAL 475
           ++      + +  +  +        +  A 
Sbjct: 298 AQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 58/372 (15%), Positives = 103/372 (27%), Gaps = 78/372 (20%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
            H+ +  E L   +    +      ++ +                          N +  
Sbjct: 8   HHHSSGRENLYF-QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIE 61

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
                 ++     L+  +        L L    L            L HLQ + I    L
Sbjct: 62  TRTGRALKATADLLEDAT--QPGRVALELRSVPL---PQFPDQAFRLSHLQHMTIDAAGL 116

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLP------- 173
              L   +     L+ L +A N L    P     L  LREL I        LP       
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 174 --LCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF-QIPISLEPLFNLS 230
                  L +L+ L + +  +   + +S + +L +++ L + N+    +  ++  L  L 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRS-LPAS-IANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 231 KLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNL 290
           +L                                                   DL     
Sbjct: 233 EL---------------------------------------------------DLRGCTA 241

Query: 291 SGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTY 350
              +P         LK L+L + S   +  + IH L +L  LD+     L  +P  I   
Sbjct: 242 LRNYPPIF-GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ- 299

Query: 351 LPGLMHLNLSRN 362
           LP    + +  +
Sbjct: 300 LPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.9 bits (203), Expect = 6e-17
 Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 21/204 (10%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGC--------VLKGALHGQDFH 52
           +  F  LE L L  + L    L  SIAS + L+ LS+R C         L       +  
Sbjct: 123 MQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 53  EFKNLEHLVMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQ 111
              NL+ L ++   +  +  S       ++ +L+ L +  S L   + L   +  L  L+
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASI-----ANLQNLKSLKIRNSPL---SALGPAIHHLPKLE 232

Query: 112 ELYIRDNDLRDSLLWCLANMTSLQVLNVAS-NQLTGNFPPGFCELVLLRELYIDNNDLRG 170
           EL +R      +          L+ L +   + L    P     L  L +L +       
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 171 SLPLCLANLTSLRVLDVSYNQLTE 194
            LP  +A L +  ++ V  +   +
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQ 315

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  128 bits (322), Expect = 6e-31
 Identities = 89/502 (17%), Positives = 171/502 (34%), Gaps = 58/502 (11%)

Query: 84  LRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQ 143
                +      ++         L + + +  +++ +R      L +   +++LN+   Q
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 144 LTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLM 202
           +        F     +++LY+  N +R   P    N+  L VL +  N L+  +      
Sbjct: 87  IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFH 144

Query: 203 HLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLS 262
           +   +  L +SNN+ +  I  +     + L+              N      +LT + L 
Sbjct: 145 NTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQL--------SSN------RLTHVDL- 188

Query: 263 GYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMP 322
                   P             L H N+S    + L      ++ L  ++NS+     + 
Sbjct: 189 -----SLIPS------------LFHANVSYNLLSTLA-IPIAVEELDASHNSI---NVVR 227

Query: 323 IHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD 382
                +L  L + +N  L      +    PGL+ ++LS N     +   F  M+ L+ L 
Sbjct: 228 GPVNVELTILKLQHN-NLTDTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 383 ISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIP 442
           IS N+L  A+         +L++L LS+N L  H+   +     L+ L LD N  I  + 
Sbjct: 285 ISNNRLV-ALNL-YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-IVTLK 340

Query: 443 ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP--NEFCQLDCLK 500
            S      L  L LS N       R L   +A   +   + + +      +  C  +  K
Sbjct: 341 LSTHH--TLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDK 398

Query: 501 -VLDLSNNSIFGTLPSC------LSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553
             LD     I  T              + + ++  ++      +           L+   
Sbjct: 399 PYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEV 458

Query: 554 NRLHGSIPNWIDKLPQLSYILL 575
           N L   +    ++  Q   +L 
Sbjct: 459 NELRAEVQQLTNEQIQQEQLLQ 480

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  124 bits (313), Expect = 9e-30
 Identities = 89/483 (18%), Positives = 161/483 (33%), Gaps = 86/483 (17%)

Query: 80  SMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNV 139
           ++ + +I++   S +    +    L     ++ L + D  + +   +  A   ++Q L +
Sbjct: 49  TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 106

Query: 140 ASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS 198
             N +    PP  F  + LL  L ++ NDL         N   L  L +S N L   I  
Sbjct: 107 GFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IED 164

Query: 199 SPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTS 258
                 TS++ L LS+N     ++   L  +  L   N          YN       L++
Sbjct: 165 DTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHAN--------VSYN------LLST 206

Query: 259 ISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWL----PENNTDLKTLLLANNS 314
           ++                        +  L+ S    N +       N +L  L L +N+
Sbjct: 207 LA--------------------IPIAVEELDASH---NSINVVRGPVNVELTILKLQHNN 243

Query: 315 L--FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSF 372
           L               L  +D+S N  L  I       +  L  L +S N    ++    
Sbjct: 244 LTDTAWLL----NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 297

Query: 373 ADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432
             +  LK LD+S+N L   +  R       LE L L +N++     S       LK L L
Sbjct: 298 QPIPTLKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNSIVTLKLS---THHTLKNLTL 352

Query: 433 DGNKF----------------IGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQ 476
             N +                + +  +     Y L             + R L   +AL 
Sbjct: 353 SHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLL-QYIALT 411

Query: 477 DIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL 536
            ++      +G         D +  +   ++ I  T    + L   EQ+    N++  ++
Sbjct: 412 SVVEKVQRAQGRCS----ATDTINSVQSLSHYI--TQQGGVPLQGNEQLEAEVNELRAEV 465

Query: 537 ESI 539
           + +
Sbjct: 466 QQL 468

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 7e-29
 Identities = 63/397 (15%), Positives = 132/397 (33%), Gaps = 51/397 (12%)

Query: 92  SRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG 151
            R  +   +D  L       +++I          +    + + +++   ++ +    P  
Sbjct: 11  PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAA 69

Query: 152 -FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEEL 210
                  +  L +++  +        A   +++ L + +N +   +      ++  +  L
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVL 128

Query: 211 ILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTF 270
           +L  N     +      N  KL T +           N       L  I      +  TF
Sbjct: 129 VLERNDLSS-LPRGIFHNTPKLTTLS--------MSNN------NLERI------EDDTF 167

Query: 271 PKFLYHQHDLNNADLSHLNLSGEFPNWLPENN-TDLKTLLLANNSLFGSFRMPIHCLQKL 329
                      +  L +L LS      +  +    L    ++ N L       +     +
Sbjct: 168 -------QATTS--LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL-----STLAIPIAV 213

Query: 330 ATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT 389
             LD S+N  +  +   +      L  L L  N    +  +   +   L  +D+SYN+L 
Sbjct: 214 EELDASHN-SINVVRGPV---NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE 267

Query: 390 GAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCY 449
             I     +    LE L +SNN L   +      +  LK L L  N  +  +  +  +  
Sbjct: 268 -KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFD 324

Query: 450 LLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE 486
            L  LYL  N +   +   L +   L+++ + +N+ +
Sbjct: 325 RLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (300), Expect = 3e-28
 Identities = 63/314 (20%), Positives = 120/314 (38%), Gaps = 24/314 (7%)

Query: 301 NNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLS 360
            +     + +   +    F      L     +   N+  +  +P  +      +  LNL+
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLN 83

Query: 361 RNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN---TLQGHI 417
                     +FA    ++ L + +N +   +P  +      L +L L  N   +L   I
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142

Query: 418 FSEKFNLTNLKRLQLDGNKFIGEIPES-LSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQ 476
           F    N   L  L +  N  +  I +        L  L LS N L+  +   L  + +L 
Sbjct: 143 FH---NTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLF 195

Query: 477 DIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL 536
              +  N L             ++ LD S+NSI   +        +  + L  N +    
Sbjct: 196 HANVSYNLLS-----TLAIPIAVEELDASHNSI-NVVRG-PVNVELTILKLQHNNLT-DT 247

Query: 537 ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRL 596
             +++Y P LV +DLSYN L   + +   K+ +L  + ++NN +   + +    +  +++
Sbjct: 248 AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 597 IDLSHNNLSGHIPP 610
           +DLSHN+L  H+  
Sbjct: 306 LDLSHNHLL-HVER 318

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (297), Expect = 7e-28
 Identities = 76/434 (17%), Positives = 143/434 (32%), Gaps = 89/434 (20%)

Query: 155 LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSN 214
             +  +++ID              L + +++    + + + + ++ L     +E L L++
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLND 84

Query: 215 NHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFL 274
                                                   Q+  I      D   F    
Sbjct: 85  L---------------------------------------QIEEI------DTYAFA--- 96

Query: 275 YHQHDLNNADLSHLNLSG----EFPNWLPENNTDLKTLLLANNSL----FGSFRMPIHCL 326
                     +  L +        P  + +N   L  L+L  N L     G F    H  
Sbjct: 97  ------YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF----HNT 146

Query: 327 QKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYN 386
            KL TL +SNN  L  I  +       L +L LS N     +    + +  L   ++SYN
Sbjct: 147 PKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 202

Query: 387 QLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLS 446
            L+  +         ++E L  S+N++   +         L  L+L  N  + +    L 
Sbjct: 203 LLS-TLAI-----PIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNN-LTDTA-WLL 251

Query: 447 KCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSN 506
               L  + LS N L   +      +  L+ + + NN L   +      +  LKVLDLS+
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310

Query: 507 NSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESI-IHYYPYLVTLDLSYNRLHG-SIPNWI 564
           N +     +      +E ++L  N     + ++ +  +  L  L LS+N     S+    
Sbjct: 311 NHLLHVERNQPQFDRLENLYLDHN----SIVTLKLSTHHTLKNLTLSHNDWDCNSLRALF 366

Query: 565 DKLPQLSYILLANN 578
             + + +      +
Sbjct: 367 RNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.4 bits (224), Expect = 7e-19
 Identities = 60/367 (16%), Positives = 127/367 (34%), Gaps = 72/367 (19%)

Query: 406 LALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKI 465
           + +   T   +   E   L N K +    +  + ++P +L                    
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAAL-------------------- 70

Query: 466 PRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIE 523
              L S   ++ + + +  +E      F     ++ L +  N+I   LP  +  ++  + 
Sbjct: 71  ---LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLT 126

Query: 524 QVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGE 583
            + L +N +      I H  P L TL +S N L     +       L  + L++N +   
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-H 185

Query: 584 IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPN 643
           + + L  +  +   ++S+N LS  +   +    L              AS  +++     
Sbjct: 186 VDLSL--IPSLFHANVSYNLLS-TLAIPIAVEEL-------------DASHNSINVVRGP 229

Query: 644 GSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 703
                                   +   ++ + L  N LT +    +     +  ++LS+
Sbjct: 230 ------------------------VNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSY 263

Query: 704 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVA 763
           N L   +   F  ++++E L +S N L   +      + TL V  +++N+L   +     
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321

Query: 764 QFSTFEE 770
           QF   E 
Sbjct: 322 QFDRLEN 328

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 58/416 (13%), Positives = 118/416 (28%), Gaps = 47/416 (11%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           L     +EEL    S   ++ +         L  L ++   L           +  L  +
Sbjct: 207 LAIPIAVEELDA--SHNSINVV--RGPVNVELTILKLQHNNLT---DTAWLLNYPGLVEV 259

Query: 61  VMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDND 119
            +    L ++           M  L  L +S +RL     L+                  
Sbjct: 260 DLSYNELEKIMYHPFV----KMQRLERLYISNNRL---VALNLY---------------- 296

Query: 120 LRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANL 179
                      + +L+VL+++ N L  +      +   L  LY+D+N +  +L   L+  
Sbjct: 297 --------GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTH 344

Query: 180 TSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEI 239
            +L+ L +S+N    N   +   ++     +  ++ H +I   LE      +      + 
Sbjct: 345 HTLKNLTLSHNDWDCNSLRALFRNVARP-AVDDADQHCKIDYQLEHGLCCKESDKPYLDR 403

Query: 240 YAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLP 299
             +  +   S+  K Q      S      +     ++        L          N L 
Sbjct: 404 LLQYIA-LTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462

Query: 300 ENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNL 359
                L    +    L       I    +   L             ++ T+L       L
Sbjct: 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKL 522

Query: 360 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQG 415
                      + A  K  + L+     L   +  + A      +  +L    ++ 
Sbjct: 523 RET--QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (308), Expect = 1e-30
 Identities = 58/262 (22%), Positives = 108/262 (41%), Gaps = 17/262 (6%)

Query: 346 EIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEI 405
           EI           ++ ++   ++ S       +K LD+S N L+  I          LE+
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 406 LALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKI 465
           L LS+N L      +  +L+ L+ L L+ N  + E+    S    +  L+ ++N++S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNY-VQELLVGPS----IETLHAANNNIS-RV 114

Query: 466 PRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIE 523
                     ++I + NN +      +      ++ LDL  N I     + L  S  ++E
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 524 QVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGE 583
            ++L  N I   ++  +  +  L TLDLS N+L   +         +++I L NN +   
Sbjct: 173 HLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 584 IPVQLCQLKEVRLIDLSHNNLS 605
           I   L   + +   DL  N   
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (275), Expect = 3e-26
 Identities = 62/391 (15%), Positives = 117/391 (29%), Gaps = 78/391 (19%)

Query: 74  LQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTS 133
           +  + ++    +I  ++ S L     L        +++EL +  N L       LA  T 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 134 LQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 193
           L++LN++SN L          L  LR L ++NN ++      L    S+  L  + N   
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-- 110

Query: 194 ENISSSPLMHLTSIEELILSNNHFQI--PISLEPLFNLSKLKTFNGEIYAETESHYNSLT 251
             IS          + + L+NN   +   +       +  L                   
Sbjct: 111 --ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL------------------- 149

Query: 252 PKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLA 311
                                      DL   ++  +N +    +        L+ L L 
Sbjct: 150 ---------------------------DLKLNEIDTVNFAELAASS-----DTLEHLNLQ 177

Query: 312 NNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSS 371
            N +            KL TLD+S+N  L  +  E      G+  ++L  N     I  +
Sbjct: 178 YNFI--YDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQ-SAAGVTWISLRNNKLV-LIEKA 232

Query: 372 FADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQ 431
               + L+  D+  N                ++ +A         +  +      +  L 
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLG 289

Query: 432 LDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462
             G     ++P      +    + L  +H  
Sbjct: 290 HYGAYCCEDLPAP----FADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (272), Expect = 5e-26
 Identities = 54/339 (15%), Positives = 106/339 (31%), Gaps = 67/339 (19%)

Query: 171 SLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLS 230
           ++     N    ++  V+ + L +   +S      +++EL LS N     IS   L   +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFT 58

Query: 231 KLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNL 290
           KL+                                             +L++  L     
Sbjct: 59  KLELL-------------------------------------------NLSSNVLYET-- 73

Query: 291 SGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTY 350
             +      E+ + L+TL L NN +       +     + TL  +NN  +  +       
Sbjct: 74  -LDL-----ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANN-NISRVSCSR--- 118

Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
             G  ++ L+ N               ++ LD+  N++       +A    +LE L L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 411 NTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLG 470
           N +       +     LK L L  NK +  +         +  + L +N L   I + L 
Sbjct: 179 NFIY--DVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 471 SLLALQDIIMPNNNLE-GPIPNEFCQLDCLKVLDLSNNS 508
               L+   +  N    G + + F +   ++ +      
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 52/308 (16%), Positives = 99/308 (32%), Gaps = 45/308 (14%)

Query: 423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482
           N    K  ++  +     +       + +  L LS N LS      L     L+ + + +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHY 542
           N L   +      L  L+ LDL+NN +   L       SIE +H + N I     S    
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYV-QELL---VGPSIETLHAANNNISRVSCSRG-- 119

Query: 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEG-EIPVQLCQLKEVRLIDLSH 601
                 + L+ N++            ++ Y+ L  N I+             +  ++L +
Sbjct: 120 -QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 602 NNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMS 661
           N +   +   +V   L               S+  L++  P                   
Sbjct: 179 NFIY-DVKGQVVFAKL----------KTLDLSSNKLAFMGPEFQS--------------- 212

Query: 662 YYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT-GTIPTTFSNLKQI 720
                     ++ I L  NKL   I   + +   +   +L  N    GT+   FS  +++
Sbjct: 213 -------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 721 ESLDLSYN 728
           +++     
Sbjct: 265 QTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.9 bits (195), Expect = 6e-16
 Identities = 41/251 (16%), Positives = 85/251 (33%), Gaps = 44/251 (17%)

Query: 517 LSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA 576
            +    +   ++ + ++  L S+      +  LDLS N L       +    +L  + L+
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 577 NNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPA 636
           +N +  E    L  L  +R +DL++N +   +        L             HA+   
Sbjct: 67  SNVLY-ETL-DLESLSTLRTLDLNNNYVQ-ELLVGPSIETL-------------HAANNN 110

Query: 637 LSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI 696
           +S    +                               I L+ NK+T       G  +R+
Sbjct: 111 ISRVSCS------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 697 RALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS 755
           + L+L  N +         ++   +E L+L YN ++  +    +V   L    ++ N L+
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA 204

Query: 756 GKIPDRVAQFS 766
             +       +
Sbjct: 205 -FMGPEFQSAA 214

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 25/221 (11%), Positives = 62/221 (28%), Gaps = 41/221 (18%)

Query: 536 LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVR 595
           +  I           ++ + L  ++ +       +  + L+ N +       L    ++ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 596 LIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQF 655
           L++LS N L          + L               +   +                  
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTL----------RTLDLNNNYVQELLV------------- 97

Query: 656 TTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFS 715
                          S+  +  + N ++  +          + + L++N +T        
Sbjct: 98  -------------GPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEG 141

Query: 716 NLKQIESLDLSYNLLHGKIPPQLIV-LNTLAVFRVAYNNLS 755
              +++ LDL  N +      +L    +TL    + YN + 
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 27/217 (12%), Positives = 72/217 (33%), Gaps = 19/217 (8%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           L    ++E L    ++ ++S++  S +     K + +    +   L   D      +++L
Sbjct: 95  LLVGPSIETLHA--ANNNISRV--SCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYL 149

Query: 61  VMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDND 119
            +    +  V+ + L   + S  +L  L+L Y+ +     +   +     L+ L +  N 
Sbjct: 150 DLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFI---YDVKGQVV-FAKLKTLDLSSNK 202

Query: 120 LRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLR-GSLPLCLAN 178
           L   +     +   +  +++ +N+L             L    +  N    G+L    + 
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNN 215
              ++ +     +    ++       T          
Sbjct: 261 NQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
              +  +DLS NKL   +  +      +  ++L +N L   I       + +E  DL  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783
             H     +        V  VA   +  K+  +  +  T     + G      LP
Sbjct: 248 GFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLP 300

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  118 bits (298), Expect = 2e-28
 Identities = 81/402 (20%), Positives = 140/402 (34%), Gaps = 48/402 (11%)

Query: 108 VHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNN 166
            H+  + +  N + +      + +  LQ L V             F  L  L  L +D N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSSPLMHLTSIEELILSNNHFQIPISLEP 225
                       L +L VL ++   L    +S +    LTS+E L+L +N+ +  I    
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPAS 148

Query: 226 LF-NLSKLKTFN-----------GEIYAETESHYNSLT-PKFQLTSISLSGYGDG--GTF 270
            F N+ +    +            ++      H+  L      L  ++    G    G  
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 271 PKFLYHQH-DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKL 329
            K       DL+        ++  F + +    T +++L+L+N+   GS           
Sbjct: 209 FKNTSITTLDLSGNGFKES-MAKRFFDAI--AGTKIQSLILSNSYNMGS------SFGHT 259

Query: 330 ATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQL 388
              D  N  F        G    G+   +LS++    ++    F+    L+ L ++ N++
Sbjct: 260 NFKDPDNFTF-------KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI 311

Query: 389 TGAIPERMAMGCFSLEILALSNN---TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE-S 444
              I +    G   L  L LS N   ++   +F    NL  L+ L L  N  I  + + S
Sbjct: 312 N-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE---NLDKLEVLDLSYNH-IRALGDQS 366

Query: 445 LSKCYLLGGLYLSDNHLSGKIPR-WLGSLLALQDIIMPNNNL 485
                 L  L L  N L   +P      L +LQ I +  N  
Sbjct: 367 FLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (284), Expect = 1e-26
 Identities = 77/427 (18%), Positives = 134/427 (31%), Gaps = 59/427 (13%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
           +  + +  N +        + L  L+ L V        I ++    L+S+  L L  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 218 QIPISLEP-LF-NLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLY 275
                LE   F  L+ L+                      L    LS    G  F     
Sbjct: 92  L---QLETGAFNGLANLEVLT--------LTQC------NLDGAVLS----GNFFKPLTS 130

Query: 276 HQH-DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDV 334
            +   L + ++  +  +  F N           L L  N         +  + +   L+ 
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLNM-----RRFHVLDLTFN--------KVKSICEEDLLNF 177

Query: 335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE 394
               F           L  +   +++          +      + +LD+S N    ++ +
Sbjct: 178 QGKHFT-------LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGL 454
           R        +I +L  +       S             D   F G     +         
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHT----NFKDPDNFTFKGLEASGVKT------C 280

Query: 455 YLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLP 514
            LS + +   +         L+ + +  N +     N F  L  L  L+LS N + G++ 
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339

Query: 515 SCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQLS 571
           S +  +L  +E + LS N I    +      P L  L L  N+L  S+P+ I D+L  L 
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQ 398

Query: 572 YILLANN 578
            I L  N
Sbjct: 399 KIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 81/436 (18%), Positives = 146/436 (33%), Gaps = 72/436 (16%)

Query: 367 SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF-NLT 425
            +P   A    +  +D+S N +   + E        L+ L +   T    I +  F  L+
Sbjct: 24  QVPELPAH---VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 426 NLKRLQLDGNKFIGEIPES-LSKCYLLGGLYLSDNHL-SGKIPRWLGSLLALQDIIMPNN 483
           +L  L+LD N+   ++     +    L  L L+  +L    +                  
Sbjct: 80  SLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLS----------------- 121

Query: 484 NLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIH 541
                  N F  L  L++L L +N+I    P+    ++     + L+ NK++   E  + 
Sbjct: 122 ------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175

Query: 542 --YYPYLVTLDLSYNRLHGSIPNWI--------DKLPQLSYILLANNYIEGEIPVQLCQL 591
                +   L LS   L      W+         K   ++ + L+ N  +  +  +    
Sbjct: 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235

Query: 592 KEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEE 651
                I     + S ++     +T   +                    F   G      +
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKD-----------------PDNFTFKGLEASGVK 278

Query: 652 TVQFTTKNMSYYYRG--RILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTG 708
           T   +   +    +      T +  + L+ N++  +I       LT +  LNLS N L  
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGS 337

Query: 709 TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPDRVAQFST 767
                F NL ++E LDLSYN +   +  Q  + L  L    +  N L   +PD +  F  
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGI--FDR 393

Query: 768 FEEDSY---EGNPFLC 780
                      NP+ C
Sbjct: 394 LTSLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.0 bits (239), Expect = 5e-21
 Identities = 78/409 (19%), Positives = 141/409 (34%), Gaps = 74/409 (18%)

Query: 25  SIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDR-MLVEVDTSFLQIVSESMAS 83
           S +    L++L +        +    F    +L  L +D    ++++T         +A+
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN----GLAN 104

Query: 84  LRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCL-ANMTSLQVLNVASN 142
           L +L+L+   L+   +       L  L+ L +RDN+++         NM    VL++  N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

Query: 143 QLTGNFPPG---FCELVLLRELYIDNNDLR--------GSLPLCLANLTSLRVLDVSYNQ 191
           ++  +         +      L + +  L+                  TS+  LD+S N 
Sbjct: 165 KVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLT 251
             E+++      +   +   L  ++     S     N                       
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP------------------- 264

Query: 252 PKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSG----EFPNWLPENNTDLKT 307
                         D  TF         L  + +   +LS          +  + TDL+ 
Sbjct: 265 --------------DNFTF-------KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303

Query: 308 LLLANNSLF----GSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNA 363
           L LA N +      +F      L  L  L++S N FLG I   +   L  L  L+LS N 
Sbjct: 304 LTLAQNEINKIDDNAF----WGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH 358

Query: 364 FNGSIPS-SFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN 411
              ++   SF  +  LK L +  NQL  ++P+ +     SL+ + L  N
Sbjct: 359 I-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (300), Expect = 5e-28
 Identities = 67/318 (21%), Positives = 116/318 (36%), Gaps = 59/318 (18%)

Query: 320 RMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLK 379
           +M        A L+V  +  L  +P  +      +  L +  N    S+P+   +   L+
Sbjct: 33  KMRACLNNGNAVLNVGESG-LTTLPDCLPA---HITTLVIPDNNLT-SLPALPPE---LR 84

Query: 380 SLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIG 439
           +L++S NQLT ++P     G   L I +     L           + L +L + GN+ + 
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQ-LT 134

Query: 440 EIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCL 499
            +P        L  L +SDN L+  +P     L  L      NN L   +P     L   
Sbjct: 135 SLPVLPPG---LQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTS-LPMLPSGL--- 183

Query: 500 KVLDLSNNSIFGTLPSCL------------------SLGSIEQVHLSKNKIEGQLESIIH 541
           + L +S+N +  +LP+                        ++++ +S N++         
Sbjct: 184 QELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSE 242

Query: 542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSH 601
               L  L +S NRL  S+P     L  LS   +  N +   +P  L  L     ++L  
Sbjct: 243 ----LKELMVSGNRL-TSLPMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 602 NNLSGHIPPCLVNTALSE 619
           N LS           ++ 
Sbjct: 294 NPLS--ERTLQALREITS 309

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (284), Expect = 4e-26
 Identities = 70/321 (21%), Positives = 120/321 (37%), Gaps = 46/321 (14%)

Query: 285 LSHLNLSGEFPNWLPENN-TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHI 343
            + LN+       LP+     + TL++ +N+L     +P     +L TL+VS N  L  +
Sbjct: 42  NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT---SLPAL-PPELRTLEVSGNQ-LTSL 96

Query: 344 PVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL 403
           PV     L  L   +                   L  L I  NQLT ++P         L
Sbjct: 97  PVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP----GL 143

Query: 404 EILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 463
           + L++S+N L     S     + L +L    N+ +  +P   S    L  L +SDN L+ 
Sbjct: 144 QELSVSDNQLA----SLPALPSELCKLWAYNNQ-LTSLPMLPSG---LQELSVSDNQLA- 194

Query: 464 KIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIE 523
            +P     L  L      NN L   +P        LK L +S N +  +LP       ++
Sbjct: 195 SLPTLPSELYKLW---AYNNRLT-SLPAL---PSGLKELIVSGNRL-TSLPV--LPSELK 244

Query: 524 QVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGE 583
           ++ +S N++             L++L +  N+L   +P  +  L   + + L  N +   
Sbjct: 245 ELMVSGNRLTSLPMLPSG----LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299

Query: 584 IPVQLCQLKEVRLIDLSHNNL 604
               L ++            +
Sbjct: 300 TLQALREI---TSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (279), Expect = 2e-25
 Identities = 78/407 (19%), Positives = 128/407 (31%), Gaps = 86/407 (21%)

Query: 164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ-IPIS 222
               +   +  CL       VL+V  + LT    + P      I  L++ +N+   +P  
Sbjct: 26  GRAAVVQKMRACL--NNGNAVLNVGESGLT----TLPDCLPAHITTLVIPDNNLTSLPAL 79

Query: 223 LEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNN 282
                 L  L           E   N LT                 + P       +L+ 
Sbjct: 80  PP---ELRTL-----------EVSGNQLT-----------------SLPVLPPGLLELSI 108

Query: 283 ADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGH 342
                          LP   + L  L +  N L     +P      L  L VS+N  L  
Sbjct: 109 FSNPL--------THLPALPSGLCKLWIFGNQLT---SLP-VLPPGLQELSVSDNQ-LAS 155

Query: 343 IPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS 402
           +P         L  L    N    S+P        L+ L +S NQL  ++P   +     
Sbjct: 156 LPALPSE----LCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPS----E 202

Query: 403 LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462
           L  L   NN L   + +     + LK L + GN+ +  +P   S+   L  L +S N L+
Sbjct: 203 LYKLWAYNNRLT-SLPAL---PSGLKELIVSGNR-LTSLPVLPSE---LKELMVSGNRLT 254

Query: 463 GKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSI 522
             +P     L     + +  N L   +P     L     ++L  N +  +  +  +L  I
Sbjct: 255 -SLPMLPSGL---LSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPL--SERTLQALREI 307

Query: 523 EQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQ 569
                           II +     +       LH +  +W+    +
Sbjct: 308 TSAPGYSG-------PIIRFDMAGASAPRETRALHLAAADWLVPARE 347

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (278), Expect = 2e-25
 Identities = 76/411 (18%), Positives = 129/411 (31%), Gaps = 89/411 (21%)

Query: 105 CELVHLQELYIRDNDLR---DSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLREL 161
           C       L + ++ L    D L         +  L +  N LT + P    EL   R L
Sbjct: 37  CLNNGNAVLNVGESGLTTLPDCLP------AHITTLVIPDNNLT-SLPALPPEL---RTL 86

Query: 162 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF-QIP 220
            +  N L  SLP+    L  L +       L            + + +L +  N    +P
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSLP 137

Query: 221 ISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDL 280
           +       L +L   +           N L                  + P        L
Sbjct: 138 VLPP---GLQELSVSD-----------NQLA-----------------SLPALPSE---L 163

Query: 281 NNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFL 340
                 +  L+      LP   + L+ L +++N L     +P     +L  L   NN  L
Sbjct: 164 CKLWAYNNQLTS-----LPMLPSGLQELSVSDNQL---ASLP-TLPSELYKLWAYNN-RL 213

Query: 341 GHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGC 400
             +P        GL  L +S N    S+P        LK L +S N+LT ++P   +   
Sbjct: 214 TSLPALPS----GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLPS--- 261

Query: 401 FSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKF---IGEIPESLSKCYLLGGLYLS 457
             L  L++  N L   +     +L++   + L+GN       +    ++      G  + 
Sbjct: 262 -GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319

Query: 458 DNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNS 508
            +      PR   +L          + L      E    D   +    +N+
Sbjct: 320 FDMAGASAPRETRALHLAA-----ADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =   99 bits (249), Expect = 7e-22
 Identities = 74/387 (19%), Positives = 121/387 (31%), Gaps = 104/387 (26%)

Query: 54  FKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQEL 113
             ++  LV+           L  +      LR L +S ++L   T L      L+ L   
Sbjct: 60  PAHITTLVIPDN-------NLTSLPALPPELRTLEVSGNQL---TSLPVLPPGLLELSIF 109

Query: 114 YIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLP 173
                 L           + L  L +  NQLT + P        L+EL + +N L  SLP
Sbjct: 110 SNPLTHLPALP-------SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLP 157

Query: 174 LCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ-IPISLEPLFNLSKL 232
              + L     L    NQLT  +        + ++EL +S+N    +P        L KL
Sbjct: 158 ALPSELCK---LWAYNNQLTS-LPML----PSGLQELSVSDNQLASLPTLPS---ELYKL 206

Query: 233 KTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSG 292
             +N           N LT                                         
Sbjct: 207 WAYN-----------NRLTS---------------------------------------- 215

Query: 293 EFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLP 352
                LP   + LK L+++ N L     +P+    +L  L VS N  L  +P+       
Sbjct: 216 -----LPALPSGLKELIVSGNRL---TSLPVL-PSELKELMVSGN-RLTSLPMLPS---- 261

Query: 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILA---LS 409
           GL+ L++ RN     +P S   +    ++++  N L+     +      S    +   + 
Sbjct: 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIR 319

Query: 410 NNTLQGHIFSEKFNLTNLKRLQLDGNK 436
            +        E   L       L   +
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =   99 bits (249), Expect = 7e-22
 Identities = 73/386 (18%), Positives = 128/386 (33%), Gaps = 76/386 (19%)

Query: 424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNN 483
                 L +  +  +  +P+ L     +  L + DN+L+  +P     L  L+   +  N
Sbjct: 39  NNGNAVLNVGESG-LTTLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRTLE---VSGN 91

Query: 484 NLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYY 543
            L   +P     L  L +           LP+      + ++ +  N    QL S+    
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLTH----LPA--LPSGLCKLWIFGN----QLTSLPVLP 140

Query: 544 PYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNN 603
           P L  L +S N+L  S+P    +L +L      NN +   +P+    L+E   + +S N 
Sbjct: 141 PGLQELSVSDNQL-ASLPALPSELCKLW---AYNNQLT-SLPMLPSGLQE---LSVSDNQ 192

Query: 604 LSGHIPPCLVN-TALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSY 662
           L+  +P        L                   L+  P                     
Sbjct: 193 LA-SLPTLPSELYKLWAYNNR-------------LTSLPAL------------------- 219

Query: 663 YYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIES 722
                  + +  + +S N+LT  +P     L     L +S N LT ++P   S L    S
Sbjct: 220 ------PSGLKELIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSGL---LS 265

Query: 723 LDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGL 782
           L +  N L  ++P  LI L++     +  N LS +   +  +  T               
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMA 323

Query: 783 PLSKSCDDNGLTTVTTEAYTENEEGD 808
             S   +   L     +      EG+
Sbjct: 324 GASAPRETRALHLAAADWLVPAREGE 349

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 24/237 (10%)

Query: 3   NFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVM 62
             + L+EL +  SD  ++ L    +    L   + R   L              L+ L++
Sbjct: 179 LPSGLQELSV--SDNQLASLPTLPSELYKLWAYNNRLTSLPALPS--------GLKELIV 228

Query: 63  DRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRD 122
                    + L  +    + L+ L +S    N+ T L         L  L +  N L  
Sbjct: 229 SG-------NRLTSLPVLPSELKELMVSG---NRLTSLPMLPS---GLLSLSVYRNQLT- 274

Query: 123 SLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSL 182
            L   L +++S   +N+  N L+        E+               +         +L
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

Query: 183 RVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEI 239
            +    +         +P        +   ++        L    N  K   F  +I
Sbjct: 335 HLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQI 391

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  112 bits (282), Expect = 2e-26
 Identities = 76/474 (16%), Positives = 146/474 (30%), Gaps = 85/474 (17%)

Query: 110 LQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLR 169
                    +++ +       + +L  L+  ++ +T     G  +L  L +L   +N++ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT 77

Query: 170 GSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNL 229
            +L L     T+L  L    N+LT    +  +  LT +  L    N     ++   +   
Sbjct: 78  -TLDLS--QNTNLTYLACDSNKLT----NLDVTPLTKLTYLNCDTNK----LTKLDVSQN 126

Query: 230 SKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLN 289
             L   N           N       LT I +S                  +N  L+ L+
Sbjct: 127 PLLTYLN--------CARN------TLTEIDVS------------------HNTQLTELD 154

Query: 290 LSGEFPNWLPE--NNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEI 347
                     +    T L TL  + N +     + +   + L  L+   N  +  + +  
Sbjct: 155 CHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTN-NITKLDL-- 208

Query: 348 GTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILA 407
                 L  L+ S N     I      +  L   D S N LT  +          L  L 
Sbjct: 209 -NQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLH 260

Query: 408 LSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPR 467
                L     +   + T L   Q +G + I E+   ++    L  L      ++ ++  
Sbjct: 261 CIQTDLLEIDLT---HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD- 313

Query: 468 WLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHL 527
            L     L  + + N  L   +         LK L   N  I     S   + ++     
Sbjct: 314 -LSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHI-QDFSSVGKIPALNNNFE 368

Query: 528 SKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI-PNWIDKLPQLSYILLANNYI 580
           ++ +              +    L+ N L  ++ P+ +D+      I   +  +
Sbjct: 369 AEGQTI-----------TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGV 411

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  104 bits (262), Expect = 7e-24
 Identities = 77/462 (16%), Positives = 144/462 (31%), Gaps = 92/462 (19%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
                    +++ +  +    L +L  LD   + +T     + +  LT + +LI ++N+ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN- 75

Query: 218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ 277
              I+   L   + L               N      +LT++ ++               
Sbjct: 76  ---ITTLDLSQNTNLTYLA--------CDSN------KLTNLDVT--------------- 103

Query: 278 HDLNNADLSHLNLSGEFPNWL----PENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLD 333
                  L++LN      N L       N  L  L  A N+L     + +    +L  LD
Sbjct: 104 ---PLTKLTYLNCDT---NKLTKLDVSQNPLLTYLNCARNTL---TEIDVSHNTQLTELD 154

Query: 334 VSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIP 393
              N  +  + V   T    L  L+ S N          +  K+L  L+   N +T  + 
Sbjct: 155 CHLNKKITKLDV---TPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD 207

Query: 394 ERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGG 453
                    L  L  S+N L     +    LT L       N  + E+   +S    L  
Sbjct: 208 LN---QNIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNP-LTELD--VSTLSKLTT 258

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
           L+     L  +I   L     L             +  +      L +LD     I    
Sbjct: 259 LHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGI---- 309

Query: 514 PSCLSLG---SIEQVHLSKNKIEGQLESI-IHYYPYLVTLDLSYNRLHGSIPNWIDKLPQ 569
            + L L     +  ++L+      +L  + + +   L +L      +     + + K+P 
Sbjct: 310 -TELDLSQNPKLVYLYLNNT----ELTELDVSHNTKLKSLSCVNAHI-QDFSS-VGKIPA 362

Query: 570 LSYILLANNYIEGEIPVQLCQLKEV------RLIDLSHNNLS 605
           L+    A       +P +      +       L+D   N ++
Sbjct: 363 LNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.7 bits (241), Expect = 3e-21
 Identities = 83/505 (16%), Positives = 142/505 (28%), Gaps = 105/505 (20%)

Query: 6   NLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDR- 64
           N    +    ++  +  + S    ++L  L      +          +   L  L+    
Sbjct: 19  NFASEVAAAFEMQATDTI-SEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSN 74

Query: 65  MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSL 124
            +  +D S          +L  L+      NK T LD  +  L  L  L    N L    
Sbjct: 75  NITTLDLSQNT-------NLTYLACDS---NKLTNLD--VTPLTKLTYLNCDTNKLTKLD 122

Query: 125 LWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRV 184
              ++    L  LN A N LT            L EL    N     L +     T L  
Sbjct: 123 ---VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVT--PQTQLTT 174

Query: 185 LDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETE 244
           LD S+N++T       +     +  L    N+    I+   L    +L            
Sbjct: 175 LDCSFNKIT----ELDVSQNKLLNRLNCDTNN----ITKLDLNQNIQLTFL--------- 217

Query: 245 SHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTD 304
                                             D ++  L+ ++++           T 
Sbjct: 218 ----------------------------------DCSSNKLTEIDVT---------PLTQ 234

Query: 305 LKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAF 364
           L     + N L     + +  L KL TL       L  I +   T+   L++        
Sbjct: 235 LTYFDCSVNPL---TELDVSTLSKLTTLHCIQT-DLLEIDL---THNTQLIYFQAEGC-- 285

Query: 365 NGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNL 424
                        L  LD     +T  +          L  L L+N  L     S   + 
Sbjct: 286 RKIKELDVTHNTQLYLLDCQAAGIT-ELDLS---QNPKLVYLYLNNTELTELDVS---HN 338

Query: 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNN 484
           T LK L       I +    + K   L   + ++      +P+   +  +L   +   + 
Sbjct: 339 TKLKSLSCVNAH-IQDFSS-VGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAV-SPDL 394

Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSI 509
           L+        +     V D + N+I
Sbjct: 395 LDQFGNPMNIEPGDGGVYDQATNTI 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.6 bits (233), Expect = 3e-20
 Identities = 78/428 (18%), Positives = 134/428 (31%), Gaps = 92/428 (21%)

Query: 1   LHNFTNLEELILVE---SDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNL 57
           +   T L +LI      + L +SQ        ++L YL+         L   D      L
Sbjct: 60  IEKLTGLTKLICTSNNITTLDLSQN-------TNLTYLACDSN----KLTNLDVTPLTKL 108

Query: 58  EHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRD 117
            +L  D           ++       L  L+ + + L   T +D  +     L EL    
Sbjct: 109 TYLNCD------TNKLTKLDVSQNPLLTYLNCARNTL---TEID--VSHNTQLTELDCHL 157

Query: 118 NDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLA 177
           N     L   +   T L  L+ + N++T        +  LL  L  D N++   L L   
Sbjct: 158 NKKITKLD--VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLDLN-- 209

Query: 178 NLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNG 237
               L  LD S N+LT       +  LT +     S N    P++   +  LSKL T + 
Sbjct: 210 QNIQLTFLDCSSNKLT----EIDVTPLTQLTYFDCSVN----PLTELDVSTLSKLTTLH- 260

Query: 238 EIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNW 297
                             L  I L+           L +        +  L+++      
Sbjct: 261 -------CIQT------DLLEIDLTH-------NTQLIYFQAEGCRKIKELDVT------ 294

Query: 298 LPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHL 357
              +NT L  L      +     + +    KL  L ++N   L  + V   ++   L  L
Sbjct: 295 ---HNTQLYLLDCQAAGI---TELDLSQNPKLVYLYLNNT-ELTELDV---SHNTKLKSL 344

Query: 358 NLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHI 417
           +            S   +  L +   +  Q              ++    L+NN+L   +
Sbjct: 345 SCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI------------TMPKETLTNNSLTIAV 390

Query: 418 FSEKFNLT 425
             +  +  
Sbjct: 391 SPDLLDQF 398

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.7 bits (210), Expect = 2e-17
 Identities = 80/483 (16%), Positives = 143/483 (29%), Gaps = 65/483 (13%)

Query: 294 FPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPG 353
           F +W P++N    + + A   +  +  +    L  L +LD  N+       +E    L G
Sbjct: 11  FNDWFPDDN--FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---KLTG 65

Query: 354 LMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTL 413
           L  L  + N    ++    +    L  L    N+LT  +          L  L    N L
Sbjct: 66  LTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKL 118

Query: 414 QGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLL 473
                S       L  L    N  + EI   +S    L  L    N    K+   +    
Sbjct: 119 TKLDVS---QNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLD--VTPQT 170

Query: 474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIE 533
            L  +    N +      +  Q   L  L+   N+I  T         +  +  S N   
Sbjct: 171 QLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNI--TKLDLNQNIQLTFLDCSSN--- 222

Query: 534 GQLESI-IHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK 592
            +L  I +     L   D S N L   +      L +L+ +      +  EI   L    
Sbjct: 223 -KLTEIDVTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EID--LTHNT 275

Query: 593 EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKE-- 650
           ++             +     NT L                A  ++    + +P      
Sbjct: 276 QLIYFQAEGCRKIKELDVTH-NTQL----------YLLDCQAAGITELDLSQNPKLVYLY 324

Query: 651 -ETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT 709
               + T  ++S+       T +  +      +  +  + +G +  +     +       
Sbjct: 325 LNNTELTELDVSH------NTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITM 376

Query: 710 IPTTFSNLKQIES-----LDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQ 764
              T +N     +     LD   N +   I P    +   A   + + NLS   P     
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGNPM--NIEPGDGGVYDQATNTITWENLSTDNPAVTYT 434

Query: 765 FST 767
           F++
Sbjct: 435 FTS 437

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 56/333 (16%), Positives = 101/333 (30%), Gaps = 62/333 (18%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           +     L  L    +   ++++   ++  + L  L          L   D      L  L
Sbjct: 123 VSQNPLLTYLNC--ARNTLTEI--DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTL 175

Query: 61  VMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDND 119
                 + E+D S  +        L  L+      N  T LD  L + + L  L    N 
Sbjct: 176 DCSFNKITELDVSQNK-------LLNRLNCDT---NNITKLD--LNQNIQLTFLDCSSNK 223

Query: 120 LRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDL----------- 168
           L +     +  +T L   + + N LT         L  L  L+    DL           
Sbjct: 224 LTEI---DVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQL 277

Query: 169 --------RGSLPLCLANLTSLRVLDVSYNQLTE-----------------NISSSPLMH 203
                   R    L + + T L +LD     +TE                  ++   + H
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSH 337

Query: 204 LTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSG 263
            T ++ L   N H Q   S+  +  L+      G+     +    + +    ++   L  
Sbjct: 338 NTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397

Query: 264 YGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPN 296
           +G+           +D     ++  NLS + P 
Sbjct: 398 FGNPMNIEPGDGGVYDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 52/330 (15%), Positives = 107/330 (32%), Gaps = 45/330 (13%)

Query: 474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIE 533
                +     ++        QL  L  LD  N+SI   +     L  + ++  + N   
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI-TDMTGIEKLTGLTKLICTSN--- 74

Query: 534 GQLESI-IHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK 592
             + ++ +     L  L    N+L  ++   +  L +L+Y+    N +      Q   L 
Sbjct: 75  -NITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLT 130

Query: 593 EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEET 652
               ++ + N L+             + + +      D      L+    + +       
Sbjct: 131 Y---LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN------- 180

Query: 653 VQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT 712
            + T  ++S          ++ ++   N +T ++   +    ++  L+ S N LT  I  
Sbjct: 181 -KITELDVSQ------NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID- 228

Query: 713 TFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDS 772
             + L Q+   D S N L       L  L TL        +L  +I   +   +      
Sbjct: 229 -VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL-EID--LTHNTQLIYFQ 281

Query: 773 YEGNPFLCGLPLSK-------SCDDNGLTT 795
            EG   +  L ++         C   G+T 
Sbjct: 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITE 311

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 15/192 (7%)

Query: 414 QGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLL 473
           Q   F++ F   N         +       S  +   L  L   ++ ++      +  L 
Sbjct: 7   QTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLT 64

Query: 474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIE 533
            L  +I  +NN+      +  Q   L  L   +N +  T      L  +  ++   NK+ 
Sbjct: 65  GLTKLICTSNNITTL---DLSQNTNLTYLACDSNKL--TNLDVTPLTKLTYLNCDTNKLT 119

Query: 534 GQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKE 593
              +  +   P L  L+ + N L   I   +    QL+ +    N    ++   +    +
Sbjct: 120 ---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQ 171

Query: 594 VRLIDLSHNNLS 605
           +  +D S N ++
Sbjct: 172 LTTLDCSFNKIT 183

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  113 bits (283), Expect = 3e-26
 Identities = 87/508 (17%), Positives = 173/508 (34%), Gaps = 65/508 (12%)

Query: 109 HLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNND 167
             + L +  N + +  +  ++ ++ L+VL ++ N++  +     F     L  L + +N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 168 LRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLF 227
           L+ ++      + SLR LD+S+N            +LT +  L LS   F+  + L P+ 
Sbjct: 112 LQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVA 167

Query: 228 NLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGG-TFPKFLYHQHDLNNADLS 286
           +L                          L S  + G        P         +   L 
Sbjct: 168 HLHLSCILLD------------------LVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209

Query: 287 HLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVE 346
            + ++           +++K L   N     +F   +     L  + + +        V+
Sbjct: 210 SVQVNMSVNALGHLQLSNIK-LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 347 IGTYL--PGLMHLNLSRNAFNGSIPSSFAD-----MKMLKSLDISYNQLTGAIPERMAMG 399
           +  +     + +LN+        I           +K L    +          E +   
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSV 327

Query: 400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 459
              + I  LS +           + ++   L    N F   + +  S    L  L L  N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 460 HLS--GKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQL-DCLKVLDLSNNSIFGTLPSC 516
            L    K+     ++ +L+ + +  N+L     +  C   + + VL+LS+N + G++  C
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 517 LSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA 576
           L                          P +  LDL  NR+  SIP  +  L  L  + +A
Sbjct: 448 LP-------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481

Query: 577 NNYIEGEIPV-QLCQLKEVRLIDLSHNN 603
           +N ++  +P     +L  ++ I L  N 
Sbjct: 482 SNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.8 bits (233), Expect = 6e-20
 Identities = 86/459 (18%), Positives = 159/459 (34%), Gaps = 37/459 (8%)

Query: 46  LHGQDFHEFKNLEHLVMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGL 104
           L   D      L  L +    +  +D      V      L  L +S++RL    I    +
Sbjct: 67  LRMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ--NISCCPM 120

Query: 105 CELVHLQELYIRDNDLRDSLLWC--LANMTSLQVLNVASNQLTGNFPPGFCELVL-LREL 161
                L+ L +  ND  D L  C    N+T L  L +++ +           L L    L
Sbjct: 121 ---ASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176

Query: 162 YIDNNDLRGSLPLCLANL-TSLRVLDVSYNQLTENI-----SSSPLMHLTSIEELILSNN 215
            + +  ++G     L    T++  L    N L         ++   + L++I+    +  
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236

Query: 216 HFQIPIS-LEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSG--YGDGGTFPK 272
                +S L     L  +   + E   +             +  +++      +     +
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 273 FLYHQHDLNNADLSHL--NLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLA 330
           F Y +  L +  + H+   +       L     ++   +L+ +       +         
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356

Query: 331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSF---ADMKMLKSLDISYNQ 387
            L+ + N        +  + L  L  L L RN    +         +M  L++LD+S N 
Sbjct: 357 FLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNS 414

Query: 388 LTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLT-NLKRLQLDGNKFIGEIPESLS 446
           L     +R      S+ +L LS+N L G +F     L   +K L L  N+ I  IP+ ++
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC---LPPKVKVLDLHNNR-IMSIPKDVT 470

Query: 447 KCYLLGGLYLSDNHLSGKIPR-WLGSLLALQDIIMPNNN 484
               L  L ++ N L   +P      L +LQ I + +N 
Sbjct: 471 HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 84/497 (16%), Positives = 143/497 (28%), Gaps = 110/497 (22%)

Query: 132 TSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSY 189
              + L+++ N ++          L  LR L + +N +R SL          L  LDVS+
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH 109

Query: 190 NQLTENISSSPLMHLTSIEELILSNNHFQ-IPISLEPLF-NLSKLKTFNGEIYAETESHY 247
           N+L  NIS  P+  L     L LS N F  +P+     F NL+KL               
Sbjct: 110 NRLQ-NISCCPMASLR---HLDLSFNDFDVLPVC--KEFGNLTKLTFLG--------LSA 155

Query: 248 NSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKT 307
                  +   +               +        DL   ++ G     L   NT +  
Sbjct: 156 A------KFRQLD---------LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

Query: 308 LLLANNSLFGSFRMPIHCLQKLATLDVSNN----FFLGHIPVEIGTYLPGLMHLNLSRNA 363
           L+   NSLF         +  L  L +SN          +   +     G   LN++   
Sbjct: 201 LVFHPNSLFSVQVNMS--VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258

Query: 364 FNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFN 423
              +   S    +      + Y                    L + N T+   I  E+F 
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEY--------------------LNIYNLTITERIDREEFT 298

Query: 424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNN 483
            +                                             +L +L    + N 
Sbjct: 299 YSET-------------------------------------------ALKSLMIEHVKNQ 315

Query: 484 NLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSC-LSLGSIEQVHLSKNKIEGQLESIIHY 542
                    +     + +  LS +        C  S  S   ++ ++N     +      
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375

Query: 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEG---EIPVQLCQLKE-VRLID 598
              L TL L  N L  +          +S +   +  +         + C   E + +++
Sbjct: 376 LKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 599 LSHNNLSGHIPPCLVNT 615
           LS N L+G +  CL   
Sbjct: 435 LSSNMLTGSVFRCLPPK 451

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.8 bits (202), Expect = 3e-16
 Identities = 78/488 (15%), Positives = 154/488 (31%), Gaps = 58/488 (11%)

Query: 283 ADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL----FGSFRMPIHCLQKLATLDVSNNF 338
            D S+ NL+   P  LP      K L L+ NS+              L +L  L +S+N 
Sbjct: 36  VDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDI----SFLSELRVLRLSHNR 87

Query: 339 FLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAM 398
            +  +   +  +   L +L++S N    +I      M  L+ LD+S+N     +P     
Sbjct: 88  -IRSLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLDLSFNDFD-VLPVCKEF 142

Query: 399 GCF-SLEILALSNNTLQGHIFSEKFNLTNLKRLQLD-GNKFIGEIPESLSKCYLLGGLYL 456
           G    L  L LS    +  +        +L  + LD  +  I        +      L+L
Sbjct: 143 GNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201

Query: 457 SDNHLSGKIPRWLGSLLALQDIIMPNNNLEG-------PIPNEFCQLDCLKVLDLSNNSI 509
             +  S    +   S+ AL  + + N  L            +E  +   L  + L +   
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

Query: 510 ----FGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYY-----PYLVTLDLSYNRLHGSI 560
                  L        +E +++    I  +++     Y       L+   +       S 
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321

Query: 561 PNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS---GHIPPCLVNTAL 617
                   +++  +L+ +       V          ++ + N  +         L     
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 618 SEGYY------DAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYY------- 664
                        VA    + S+        N       +      +++           
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 665 ---RGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT-TFSNLKQI 720
                 +   +  +DL  N++   IP  + +L  ++ LN++ N L  ++P   F  L  +
Sbjct: 442 GSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL 499

Query: 721 ESLDLSYN 728
           + + L  N
Sbjct: 500 QYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 79/453 (17%), Positives = 150/453 (33%), Gaps = 61/453 (13%)

Query: 5   TNLEELILVESDLHVSQLLQSI--ASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVM 62
            +LE L     D+  ++L Q+I     +SL++L +           ++F     L  L +
Sbjct: 100 QDLEYL-----DVSHNRL-QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153

Query: 63  DRMLVEVDTSFLQIVSESMASLRILSLSYSRLN--KNTILDQGLCELVHLQELYIRDNDL 120
                       +     +  +  L LS   L+     I       L       +     
Sbjct: 154 SAA---------KFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 121 RDSLLWCLANM--TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLAN 178
            +SL     NM   +L  L +++ +L                       L          
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL------------MTFLSELTRGPTLL 252

Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPL-FNLSKLKTF-- 235
             +L+ ++ ++    +            +E L + N      I  E   ++ + LK+   
Sbjct: 253 NVTLQHIETTWKCSVKLFQ---FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 236 ----NGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLS 291
               N       E+ Y+      ++    LS                     + +  N+ 
Sbjct: 310 EHVKNQVFLFSKEALYSVFA---EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ-NVF 365

Query: 292 GEFPNWLPENNTDLKTLLLANN---SLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIG 348
            +           L+TL+L  N   + F    M  + +  L TLDVS N    H      
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-MSSLETLDVSLNSLNSHAYDRTC 424

Query: 349 TYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILAL 408
            +   ++ LNLS N   GS+         +K LD+  N++  +IP+ +     +L+ L +
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV-THLQALQELNV 480

Query: 409 SNNTLQ---GHIFSEKFNLTNLKRLQLDGNKFI 438
           ++N L+     +F     LT+L+ + L  N + 
Sbjct: 481 ASNQLKSVPDGVFD---RLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 59/383 (15%), Positives = 126/383 (32%), Gaps = 59/383 (15%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGH 416
           L+LS+N+ +       + +  L+ L +S+N++  ++   + +    LE L +S+N LQ  
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNI 115

Query: 417 IFSEKFNLTNLKRLQLDGNKF----IGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSL 472
                  + +L+ L L  N F    + +   +L+K   L  L LS      ++   L  +
Sbjct: 116 SCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTK---LTFLGLSAAKFR-QLD--LLPV 166

Query: 473 LALQDIIMPNNNLEGPIP-NEFCQLDCLKV----LDLSNNSIFGTLPSCLSLGSIEQVHL 527
             L    +  + +   I   E   L         L    NS+F ++   +S+ ++  + L
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF-SVQVNMSVNALGHLQL 225

Query: 528 SKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQ 587
           S  K+  +    +  +   +T   +   +                       ++      
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-----------TTWKCSVKLFQFFW 274

Query: 588 LCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPM 647
              ++ + + +L+              TAL        +   +H       +        
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALK-------SLMIEHVKNQVFLFSKEALY-- 325

Query: 648 GKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT 707
                               +   M+   LS +             +    LN + N  T
Sbjct: 326 -------------------SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 708 GTIPTTFSNLKQIESLDLSYNLL 730
            ++    S LK++++L L  N L
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.4 bits (167), Expect = 5e-12
 Identities = 60/370 (16%), Positives = 108/370 (29%), Gaps = 48/370 (12%)

Query: 402 SLEILALSNN---TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL-SKCYLLGGLYLS 457
             + L+LS N    L+    S    L+ L+ L+L  N+ I  +   +      L  L +S
Sbjct: 53  RTKALSLSQNSISELRMPDIS---FLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVS 108

Query: 458 DNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSC- 516
            N L   I                            C +  L+ LDLS N  F  LP C 
Sbjct: 109 HNRLQ-NIS--------------------------CCPMASLRHLDLSFND-FDVLPVCK 140

Query: 517 --LSLGSIEQVHLSKNKI-EGQLESIIHYYPYLVTLDLSYNRLHGSIPN--WIDKLPQLS 571
              +L  +  + LS  K  +  L  + H +   + LDL    + G       I     L 
Sbjct: 141 EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

Query: 572 YILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDH 631
            +   N+    ++ + +  L  ++L ++  N+ +       ++          V      
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 632 ASAPALSYFPPNGSPMGKEE------TVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE 685
            +            P   E       T+        + Y    L S+    +        
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320

Query: 686 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLA 745
                     +    LS ++          +      L+ + N+    +      L  L 
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 746 VFRVAYNNLS 755
              +  N L 
Sbjct: 381 TLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           +      + LS N ++      I +L+ +R L LSHN +       F   + +E LD+S+
Sbjct: 50  LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109

Query: 728 NLLHGKIPPQ 737
           N L   I   
Sbjct: 110 NRLQ-NISCC 118

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (268), Expect = 2e-25
 Identities = 64/315 (20%), Positives = 125/315 (39%), Gaps = 33/315 (10%)

Query: 304 DLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNA 363
            L+ +  ++  L    ++P       A LD+ NN  +  I       L  L  L L  N 
Sbjct: 32  HLRVVQCSDLGLE---KVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK 87

Query: 364 FNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF-SLEILALSNN---TLQGHIFS 419
            +   P +FA +  L+ L +S NQL   +PE        +L+ L +  N    ++  +F+
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPE----KMPKTLQELRVHENEITKVRKSVFN 142

Query: 420 EKFNLTNLKRLQLDGNKF-IGEIPE-SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQD 477
               L  +  ++L  N      I   +      L  + ++D +++  IP+  G   +L +
Sbjct: 143 ---GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTE 196

Query: 478 IIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLP--SCLSLGSIEQVHLSKNKIEGQ 535
           + +  N +          L+ L  L LS NSI   +   S  +   + ++HL+ NK+  +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 536 LESIIHYYPYLVTLDLSYNRLHG------SIPNWIDKLPQLSYILLANNYIE-GEIPVQL 588
           +   +  + Y+  + L  N +          P +  K    S + L +N ++  EI    
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 589 CQ-LKEVRLIDLSHN 602
            + +     + L + 
Sbjct: 315 FRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (256), Expect = 1e-23
 Identities = 66/322 (20%), Positives = 108/322 (33%), Gaps = 60/322 (18%)

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
               +L++ +N++T      F  L  L  L + NN +    P   A L  L  L +S NQ
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 192 LTENISSSPLMHLTSIEELILSNNHFQI--PISLEPLFNLSKLKTFNGEIYAETESHYNS 249
           L E     P     +++EL +  N            L  +  +           E   N 
Sbjct: 112 LKE----LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-----------ELGTN- 155

Query: 250 LTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSG----EFPNWLPENNTDL 305
                 L S  +      G F         +    LS++ ++       P  LP +   L
Sbjct: 156 -----PLKSSGIE----NGAF-------QGMKK--LSYIRIADTNITTIPQGLPPS---L 194

Query: 306 KTLLLANNSL----FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSR 361
             L L  N +      S +     L  LA L +S N  +  +        P L  L+L+ 
Sbjct: 195 TELHLDGNKITKVDAASLKG----LNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNN 249

Query: 362 NAFNGSIPSSFADMKMLKSLDISYNQLT-----GAIPERMAMGCFSLEILALSNNTLQGH 416
           N     +P   AD K ++ + +  N ++        P        S   ++L +N +Q  
Sbjct: 250 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308

Query: 417 -IFSEKF-NLTNLKRLQLDGNK 436
            I    F  +     +QL   K
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 63/286 (22%), Positives = 115/286 (40%), Gaps = 37/286 (12%)

Query: 322 PIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSL 381
           P  C   L  +  S+   L  +P ++    P    L+L  N         F ++K L +L
Sbjct: 26  PFRCQCHLRVVQCSDLG-LEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTL 81

Query: 382 DISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEI 441
            +  N+++                       +    F+    L  L+RL L  N+ + E+
Sbjct: 82  ILINNKIS----------------------KISPGAFA---PLVKLERLYLSKNQ-LKEL 115

Query: 442 PESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL-EGPIPNE-FCQLDCL 499
           PE + K   L  L + +N ++         L  +  + +  N L    I N  F  +  L
Sbjct: 116 PEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGS 559
             + +++ +I  T+P  L   S+ ++HL  NKI     + +     L  L LS+N +   
Sbjct: 174 SYIRIADTNI-TTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 560 IPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
               +   P L  + L NN +  ++P  L   K ++++ L +NN+S
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 62/310 (20%), Positives = 107/310 (34%), Gaps = 77/310 (24%)

Query: 454 LYLSDNHLS---GKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIF 510
           +  SD  L      +P    +LL LQ     NN +      +F  L  L  L L NN I 
Sbjct: 36  VQCSDLGLEKVPKDLPPDT-ALLDLQ-----NNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 511 GTLPSCLS-LGSIEQVHLSKNKIEGQLESI-IHYYPYLVTLDLSYNRLHGSIPNWIDKLP 568
              P   + L  +E+++LSKN    QL+ +       L  L +  N +     +  + L 
Sbjct: 90  KISPGAFAPLVKLERLYLSKN----QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN 145

Query: 569 QLSYILLANNYI-EGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVA 626
           Q+  + L  N +    I     Q +K++  I ++  N                       
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN----------------------- 182

Query: 627 PTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI 686
                     ++  P                          +  S++ + L  NK+T ++
Sbjct: 183 ----------ITTIPQG------------------------LPPSLTELHLDGNKIT-KV 207

Query: 687 PTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLA 745
                  L  +  L LS N+++     + +N   +  L L+ N L  K+P  L     + 
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266

Query: 746 VFRVAYNNLS 755
           V  +  NN+S
Sbjct: 267 VVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 49/250 (19%), Positives = 86/250 (34%), Gaps = 41/250 (16%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSI-----ASFSSLKYLSMRGCVLKGALHGQDFHEFK 55
             N  NL  LIL+ +       +  I     A    L+ L +    LK           K
Sbjct: 72  FKNLKNLHTLILINN------KISKISPGAFAPLVKLERLYLSKNQLKELPEKM----PK 121

Query: 56  NLEHLVMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELY 114
            L+ L +    + +V  S        +  + ++ L  + L  + I +     +  L  + 
Sbjct: 122 TLQELRVHENEITKVRKSVFN----GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 115 IRDNDLR---DSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRG 170
           I D ++      L        SL  L++  N++T          L  L +L +  N +  
Sbjct: 178 IADTNITTIPQGLP------PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA 230

Query: 171 SLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNH--------FQIPIS 222
                LAN   LR L ++ N+L + +    L     I+ + L NN+        F  P  
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVK-VPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 223 LEPLFNLSKL 232
                + S +
Sbjct: 289 NTKKASYSGV 298

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 13/188 (6%)

Query: 426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL 485
           +L+ +Q        ++P+ L        L L +N ++        +L  L  +I+ NN +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 486 EGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPY 545
               P  F  L  L+ L LS N +   LP  +   +++++ + +N+I    +S+ +    
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQL-KELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 546 LVTLDLSYNRLHGSI--PNWIDKLPQLSYILLANNYIEGEIPVQL-CQLKEVRLIDLSHN 602
           ++ ++L  N L  S         + +LSYI +A+  I   IP  L   L E   + L  N
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTE---LHLDGN 202

Query: 603 NLSGHIPP 610
            ++  +  
Sbjct: 203 KIT-KVDA 209

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 27/176 (15%), Positives = 62/176 (35%), Gaps = 23/176 (13%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
                 L  + +  +D +++ + Q +    SL  L + G  +   +         NL  L
Sbjct: 167 FQGMKKLSYIRI--ADTNITTIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKL 221

Query: 61  VMDRMLVEV--DTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDN 118
            +    +    + S       +   LR L L+ ++L     +  GL +  ++Q +Y+ +N
Sbjct: 222 GLSFNSISAVDNGSL-----ANTPHLRELHLNNNKL---VKVPGGLADHKYIQVVYLHNN 273

Query: 119 DLRD------SLLWCLANMTSLQVLNVASNQLT-GNFPPG-FCELVLLRELYIDNN 166
           ++                  S   +++ SN +      P  F  + +   + + N 
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           +    + +DL  NK+T         L  +  L L +N ++   P  F+ L ++E L LS 
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 728 NLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRV 762
           N L  ++P ++    TL   RV  N ++ K+   V
Sbjct: 110 NQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSV 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           L  +  + LS N+L  E+P        ++ L +  N +T    + F+ L Q+  ++L  N
Sbjct: 99  LVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 729 LLH-GKIPPQLIV-LNTLAVFRVAYNNLSGKIPD 760
            L    I       +  L+  R+A  N++  IP 
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           +  +S I ++   +T  IP   G    +  L+L  N +T     +   L  +  L LS+N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 729 LLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPD 760
            +   +    +     L    +  N L  K+P 
Sbjct: 227 SIS-AVDNGSLANTPHLRELHLNNNKLV-KVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG------TIPTTFSNLKQIES 722
              +  + L+ NKL  ++P  +     I+ + L +NN++         P   +       
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 723 LDLSYN-LLHGKIPP 736
           + L  N + + +I P
Sbjct: 298 VSLFSNPVQYWEIQP 312

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (262), Expect = 5e-24
 Identities = 62/261 (23%), Positives = 99/261 (37%), Gaps = 17/261 (6%)

Query: 324 HCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDI 383
            C  + + +       L  +P  I         LNL  N       +SF  ++ L+ L +
Sbjct: 40  SCSNQFSKVICVRKN-LREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQL 95

Query: 384 SYNQLTGAIPERMAMGCFSLEILALSNN---TLQGHIFSEKFNLTNLKRLQLDGNKFIGE 440
           S N +   I      G  +L  L L +N   T+    F     L+ LK L L  N  I  
Sbjct: 96  SRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNP-IES 150

Query: 441 IPESL-SKCYLLGGLYLSD-NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC 498
           IP    ++   L  L L +   LS         L  L+ + +   NL   IP     L  
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIK 208

Query: 499 LKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
           L  LDLS N +    P     L  ++++ + +++I+    +       LV ++L++N L 
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 558 GSIPNWIDKLPQLSYILLANN 578
               +    L  L  I L +N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (256), Expect = 4e-23
 Identities = 71/265 (26%), Positives = 110/265 (41%), Gaps = 28/265 (10%)

Query: 277 QHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL----FGSFRMPIHCLQKLATL 332
            +  +       NL  E P+ +    T+ + L L  N +      SF+     L+ L  L
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKH----LRHLEIL 93

Query: 333 DVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGA 391
            +S N  +  I +     L  L  L L  N    +IP+ +F  +  LK L +  N +  +
Sbjct: 94  QLSRNH-IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-S 150

Query: 392 IPERMAMGCFSLEILALSNN----TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSK 447
           IP        SL  L L        +    F     L+NL+ L L     + EIP +L+ 
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFE---GLSNLRYLNLAMCN-LREIP-NLTP 205

Query: 448 CYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNN 507
              L  L LS NHLS   P     L+ LQ + M  + ++    N F  L  L  ++L++N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 508 SIFGTLPSCL--SLGSIEQVHLSKN 530
           ++   LP  L   L  +E++HL  N
Sbjct: 266 NL-TLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 6e-21
 Identities = 62/288 (21%), Positives = 107/288 (37%), Gaps = 64/288 (22%)

Query: 132 TSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYN 190
           T+ ++LN+  NQ+        F  L  L  L +  N +R         L +L  L++  N
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 191 QLTENISSSPLMHLTSIEELILSNNHFQ-IPISL-EPLFNLSKLKTFNGEIYAETESHYN 248
           +LT  I +   ++L+ ++EL L NN  + IP      + +L +L                
Sbjct: 123 RLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL----------GELK 171

Query: 249 SLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTL 308
                 +L+ IS       G F         L+N                      L+ L
Sbjct: 172 ------RLSYIS------EGAF-------EGLSN----------------------LRYL 190

Query: 309 LLANNSL--FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG 366
            LA  +L    +       L KL  LD+S N  L  I       L  L  L + ++    
Sbjct: 191 NLAMCNLREIPNLTP----LIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQV 245

Query: 367 SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ 414
              ++F +++ L  +++++N LT  +P  +      LE + L +N   
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.0 bits (226), Expect = 2e-19
 Identities = 57/238 (23%), Positives = 91/238 (38%), Gaps = 21/238 (8%)

Query: 283 ADLSHLNLSGEFPNWLPENN----TDLKTLLLANNSL----FGSFRMPIHCLQKLATLDV 334
            +   LNL       +  N+      L+ L L+ N +     G+F      L  L TL++
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN----GLANLNTLEL 119

Query: 335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDIS-YNQLTGAIP 393
            +N  L  IP     YL  L  L L  N        +F  +  L+ LD+    +L+  I 
Sbjct: 120 FDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YIS 177

Query: 394 ERMAMGCFSLEILALSNNTLQG-HIFSEKFNLTNLKRLQLDGNKFIGEIPE-SLSKCYLL 451
           E    G  +L  L L+   L+     +    L  L  L L GN  +  I   S      L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELDLSGNH-LSAIRPGSFQGLMHL 233

Query: 452 GGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI 509
             L++  + +         +L +L +I + +NNL     + F  L  L+ + L +N  
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 61/291 (20%), Positives = 109/291 (37%), Gaps = 69/291 (23%)

Query: 82  ASLRILSLSYSRLNKNTILDQG-LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVA 140
            + R+L+L     N+  I+       L HL+ L +  N +R   +     + +L  L + 
Sbjct: 64  TNTRLLNLHE---NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 141 SNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVS-YNQLTENISS 198
            N+LT   P G F  L  L+EL++ NN +          + SLR LD+    +L+  IS 
Sbjct: 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISE 178

Query: 199 SPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTS 258
                L+++  L L+  + +   +L PL  L +L           +   N       L++
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL-----------DLSGN------HLSA 221

Query: 259 ISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL--- 315
           I                                G F          L+ L +  + +   
Sbjct: 222 IR------------------------------PGSFQGL-----MHLQKLWMIQSQIQVI 246

Query: 316 -FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFN 365
              +F      LQ L  +++++N  L  +P ++ T L  L  ++L  N +N
Sbjct: 247 ERNAFD----NLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 15/211 (7%)

Query: 29  FSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDR-MLVEVDTSFLQIVSESMASLRIL 87
            ++ + L++    ++  +    F   ++LE L + R  +  ++          +A+L  L
Sbjct: 63  STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN----GLANLNTL 117

Query: 88  SLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVAS-NQLTG 146
            L  +RL   TI +     L  L+EL++R+N +     +    + SL+ L++    +L+ 
Sbjct: 118 ELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS- 174

Query: 147 NFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLT 205
               G F  L  LR L +   +LR  +P  L  L  L  LD+S N L+  I       L 
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLM 231

Query: 206 SIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
            +++L +  +  Q+ I      NL  L   N
Sbjct: 232 HLQKLWMIQSQIQV-IERNAFDNLQSLVEIN 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 52/281 (18%), Positives = 95/281 (33%), Gaps = 39/281 (13%)

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
           +     +L  ++P  + +    + + +  N ++    N F  L  L++L LS N I    
Sbjct: 48  VICVRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104

Query: 514 PSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSY 572
               + L ++  + L  N++         Y   L  L L  N +        +++P L  
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 573 ILLA-NNYIEGEIPVQ-LCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWD 630
           + L     +   I       L  +R ++L+  NL   IP       L E           
Sbjct: 165 LDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELD--------- 213

Query: 631 HASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI 690
             S   LS   P            F             L  +  + +  +++        
Sbjct: 214 -LSGNHLSAIRPGS----------FQG-----------LMHLQKLWMIQSQIQVIERNAF 251

Query: 691 GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731
             L  +  +NL+HNNLT      F+ L  +E + L +N  +
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 6e-12
 Identities = 53/260 (20%), Positives = 89/260 (34%), Gaps = 38/260 (14%)

Query: 499 LKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
            ++L+L  N I     +    L  +E + LS+N I        +    L TL+L  NRL 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 558 GSIPNWIDKLPQLSYILLANNYIEGEIPVQL-CQLKEVRLIDLSHNNLSGHIPPCLVNTA 616
                    L +L  + L NN IE  IP     ++  +R +DL                 
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK------------- 171

Query: 617 LSEGYYDAVAPTWDHASAPALSYFPPNG-SPMGKEETVQFTTKNMSYYYRGRILTSMSGI 675
                               LSY        +     +     N+        L  +  +
Sbjct: 172 -------------------RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212

Query: 676 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735
           DLS N L+   P     L  ++ L +  + +       F NL+ +  ++L++N L   +P
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271

Query: 736 PQLIV-LNTLAVFRVAYNNL 754
             L   L+ L    + +N  
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 39/196 (19%), Positives = 74/196 (37%), Gaps = 16/196 (8%)

Query: 1   LHNFTNLEELILVESDLHVSQL-LQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEH 59
            +   NL  L L   D  ++ +   +    S LK L +R   ++ ++    F+   +L  
Sbjct: 108 FNGLANLNTLEL--FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRR 164

Query: 60  LVMDRM--LVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRD 117
           L +  +  L  +     +     +++LR L+L+   L +       L  L+ L EL +  
Sbjct: 165 LDLGELKRLSYISEGAFE----GLSNLRYLNLAMCNLRE----IPNLTPLIKLDELDLSG 216

Query: 118 NDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCL 176
           N L          +  LQ L +  +Q+        F  L  L E+ + +N+L        
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 177 ANLTSLRVLDVSYNQL 192
             L  L  + + +N  
Sbjct: 276 TPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           I T+   ++L  N++         +L  +  L LS N++       F+ L  + +L+L  
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 728 NLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPDRV 762
           N L   IP    V L+ L    +  N +   IP   
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 24/150 (16%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLS 726
           L+ +  + L  N +   IP+     +  +R L+L        I    F  L  +  L+L+
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 727 YNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRV--------------AQFSTFEEDS 772
              L  +IP  L  L  L    ++ N+LS  I                  +Q    E ++
Sbjct: 194 MCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 773 YEGNPFLCGLPLSKSCDDNGLTTVTTEAYT 802
           ++    L  + L+     N LT +  + +T
Sbjct: 251 FDNLQSLVEINLA----HNNLTLLPHDLFT 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (262), Expect = 6e-24
 Identities = 56/260 (21%), Positives = 99/260 (38%), Gaps = 15/260 (5%)

Query: 324 HCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDI 383
            C  + + +  +    L  +P  I        +LNL  N        +F  +  L+ L +
Sbjct: 51  SCSNQFSKVVCTRRG-LSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL 106

Query: 384 SYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIP 442
             N +   I      G  SL  L L +N L   I S  F  L+ L+ L L  N  I  IP
Sbjct: 107 GRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNP-IESIP 163

Query: 443 E-SLSKCYLLGGLYLSD-NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLK 500
             + ++   L  L L +   L          L  L+ + +   N++  +P     L  L+
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLE 221

Query: 501 VLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG 558
            L++S N     +       L S++++ +  +++     +       LV L+L++N L  
Sbjct: 222 ELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

Query: 559 SIPNWIDKLPQLSYILLANN 578
              +    L  L  + L +N
Sbjct: 281 LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 93.7 bits (233), Expect = 3e-20
 Identities = 56/286 (19%), Positives = 92/286 (32%), Gaps = 60/286 (20%)

Query: 132 TSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYN 190
           ++ + LN+  N +        F  L  L  L +  N +R         L SL  L++  N
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 191 QLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSL 250
            LT  I S    +L+ + EL L NN  +  I       +  L   +              
Sbjct: 134 WLTV-IPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLD-------LGELK-- 182

Query: 251 TPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLL 310
               +L  IS       G F         L N                      LK L L
Sbjct: 183 ----KLEYIS------EGAF-------EGLFN----------------------LKYLNL 203

Query: 311 ANNSL--FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSI 368
              ++    +       L  L  L++S N     I       L  L  L +  +  +   
Sbjct: 204 GMCNIKDMPNLTP----LVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 369 PSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ 414
            ++F  +  L  L++++N L+ ++P  +      L  L L +N   
Sbjct: 259 RNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 21/238 (8%)

Query: 283 ADLSHLNLSGEFPNWLPENN----TDLKTLLLANNSL----FGSFRMPIHCLQKLATLDV 334
           ++  +LNL       +  +       L+ L L  NS+     G+F      L  L TL++
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLEL 130

Query: 335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDIS-YNQLTGAIP 393
            +N+ L  IP     YL  L  L L  N        +F  +  L  LD+    +L   I 
Sbjct: 131 FDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YIS 188

Query: 394 ERMAMGCFSLEILALSNNTLQG-HIFSEKFNLTNLKRLQLDGNKFIGEIPE-SLSKCYLL 451
           E    G F+L+ L L    ++     +    L  L+ L++ GN    EI   S      L
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNH-FPEIRPGSFHGLSSL 244

Query: 452 GGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI 509
             L++ ++ +S         L +L ++ + +NNL     + F  L  L  L L +N  
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.0 bits (221), Expect = 9e-19
 Identities = 61/286 (21%), Positives = 102/286 (35%), Gaps = 59/286 (20%)

Query: 82  ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVAS 141
           ++ R L+L  + +    I       L HL+ L +  N +R   +     + SL  L +  
Sbjct: 75  SNTRYLNLMENNIQ--MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 142 NQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVS-YNQLTENISSS 199
           N LT   P G F  L  LREL++ NN +          + SL  LD+    +L   IS  
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-ISEG 190

Query: 200 PLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSI 259
               L +++ L L   + +   +L PL  L +L                           
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL--------------------------- 223

Query: 260 SLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSF 319
                                   ++S  +   E         + LK L + N+ +    
Sbjct: 224 ------------------------EMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 320 RMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFN 365
           R     L  L  L++++N  L  +P ++ T L  L+ L+L  N +N
Sbjct: 259 RNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 29  FSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDR-MLVEVDTSFLQIVSESMASLRIL 87
            S+ +YL++    ++  +    F    +LE L + R  + +++          +ASL  L
Sbjct: 74  PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTL 128

Query: 88  SLSYSRLNKNTILDQG-LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVAS-NQLT 145
            L     N  T++  G    L  L+EL++R+N +     +    + SL  L++    +L 
Sbjct: 129 ELFD---NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 146 GNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHL 204
                G F  L  L+ L +   +++  +P  L  L  L  L++S N   E I       L
Sbjct: 186 -YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPE-IRPGSFHGL 241

Query: 205 TSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
           +S+++L + N+   + I       L+ L   N
Sbjct: 242 SSLKKLWVMNSQVSL-IERNAFDGLASLVELN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 6e-13
 Identities = 53/285 (18%), Positives = 99/285 (34%), Gaps = 47/285 (16%)

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
           +  +   LS ++P+ +      + + +  NN++    + F  L  L+VL L  NSI    
Sbjct: 59  VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 514 PSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSY 572
               + L S+  + L  N +         Y   L  L L  N +        +++P L  
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

Query: 573 ILLAN-NYIEGEIPVQ-LCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWD 630
           + L     +E  I       L  ++ ++L   N+   +P       L E           
Sbjct: 176 LDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELE--------- 224

Query: 631 HASAPALSY----FPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI 686
                 +S         GS  G                    L+S+  + +  ++++   
Sbjct: 225 ------MSGNHFPEIRPGSFHG--------------------LSSLKKLWVMNSQVSLIE 258

Query: 687 PTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731
                 L  +  LNL+HNNL+      F+ L+ +  L L +N  +
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 46/260 (17%), Positives = 84/260 (32%), Gaps = 38/260 (14%)

Query: 499 LKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
            + L+L  N+I          L  +E + L +N I        +    L TL+L  N L 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 558 GSIPNWIDKLPQLSYILLANNYIEGEIPVQ-LCQLKEVRLIDLSHNNLSGHIPPCLVNTA 616
                  + L +L  + L NN IE  IP     ++  +  +DL                 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK------------- 182

Query: 617 LSEGYYDAVAPTWDHASAPALSYFPPNG-SPMGKEETVQFTTKNMSYYYRGRILTSMSGI 675
                               L Y        +   + +     N+        L  +  +
Sbjct: 183 -------------------KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223

Query: 676 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735
           ++S N      P     L+ ++ L + ++ ++      F  L  +  L+L++N L   +P
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP 282

Query: 736 PQLIV-LNTLAVFRVAYNNL 754
             L   L  L    + +N  
Sbjct: 283 HDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 18/197 (9%)

Query: 1   LHNFTNLEELILVESDLHVSQL-LQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEH 59
            +   +L  L L   D  ++ +   +    S L+ L +R   ++ ++    F+   +L  
Sbjct: 119 FNGLASLNTLEL--FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMR 175

Query: 60  LVMDRM--LVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRD 117
           L +  +  L  +     +     + +L+ L+L    +         L  LV L+EL +  
Sbjct: 176 LDLGELKKLEYISEGAFE----GLFNLKYLNLGMCNIKD----MPNLTPLVGLEELEMSG 227

Query: 118 NDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPL-C 175
           N   +        ++SL+ L V ++Q++       F  L  L EL + +N+L  SLP   
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDL 285

Query: 176 LANLTSLRVLDVSYNQL 192
              L  L  L + +N  
Sbjct: 286 FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           I ++   ++L  N +         +L  +  L L  N++       F+ L  + +L+L  
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 728 NLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPDRV 762
           N L   IP      L+ L    +  N +   IP   
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 22/137 (16%)

Query: 669 LTSMSGIDLS-CNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS 726
           + S+  +DL    KL   I       L  ++ LNL   N+   +P   + L  +E L++S
Sbjct: 170 VPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMS 226

Query: 727 YNLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 785
            N    +I P     L++L    V  + +           S  E ++++G   L  L L+
Sbjct: 227 GNHFP-EIRPGSFHGLSSLKKLWVMNSQV-----------SLIERNAFDGLASLVELNLA 274

Query: 786 KSCDDNGLTTVTTEAYT 802
                N L+++  + +T
Sbjct: 275 ----HNNLSSLPHDLFT 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS- 726
           L S++ ++L  N LT  IP+    YL+++R L L +N +       F+ +  +  LDL  
Sbjct: 122 LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 727 YNLLHGKIPPQ----LIVLNTLAVFRVAYNNLS 755
              L   I       L  L  L    +   N+ 
Sbjct: 181 LKKLE-YISEGAFEGLFNLKYL---NLGMCNIK 209

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  101 bits (254), Expect = 2e-23
 Identities = 60/315 (19%), Positives = 118/315 (37%), Gaps = 34/315 (10%)

Query: 304 DLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNA 363
            L+ +  ++  L     +P         LD+ NN  +  +  +    L  L  L L  N 
Sbjct: 34  HLRVVQCSDLGLK---AVPKEISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK 89

Query: 364 FNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF-SLEILALSNN---TLQGHIFS 419
            +     +F+ ++ L+ L IS N L   IP  +      SL  L + +N    +   +FS
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL----PSSLVELRIHDNRIRKVPKGVFS 144

Query: 420 EKFNLTNLKRLQLDGNKF-IGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDI 478
               L N+  +++ GN                L  L +S+  L+  IP+       L ++
Sbjct: 145 ---GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNEL 198

Query: 479 IMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLP--SCLSLGSIEQVHLSKNKIEGQL 536
            + +N ++     +  +   L  L L +N I   +   S   L ++ ++HL  NK+  ++
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 537 ESIIHYYPYLVTLDLSYNRLHGSIPN-------WIDKLPQLSYILLANNYIE-GEIPVQL 588
            + +     L  + L  N +   +         +  K    + I L NN +   E+    
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 589 CQ-LKEVRLIDLSHN 602
            + + +   I   + 
Sbjct: 316 FRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 99.7 bits (249), Expect = 7e-23
 Identities = 63/285 (22%), Positives = 106/285 (37%), Gaps = 36/285 (12%)

Query: 322 PIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSL 381
           P  C   L  +  S+   L  +P EI    P    L+L  N  +      F  ++ L +L
Sbjct: 28  PFGCHCHLRVVQCSDLG-LKAVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYAL 83

Query: 382 DISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEI 441
            +  N+++                       +    FS    L  L++L +  N  + EI
Sbjct: 84  VLVNNKIS----------------------KIHEKAFS---PLRKLQKLYISKNH-LVEI 117

Query: 442 PESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL-EGPIPNEFCQLDCLK 500
           P +L     L  L + DN +          L  +  I M  N L              L 
Sbjct: 118 PPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175

Query: 501 VLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI 560
            L +S   +   +P  L   ++ ++HL  NKI+      +  Y  L  L L +N++    
Sbjct: 176 YLRISEAKL-TGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233

Query: 561 PNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
              +  LP L  + L NN +   +P  L  LK ++++ L  NN++
Sbjct: 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.6 bits (241), Expect = 8e-22
 Identities = 59/320 (18%), Positives = 111/320 (34%), Gaps = 57/320 (17%)

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
               +L++ +N ++      F  L  L  L + NN +        + L  L+ L +S N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 192 LTENISSSPLMHLTSIEELILSNNHFQI--PISLEPLFNLSKLKTFNGEIYAETESHYNS 249
           L       P    +S+ EL + +N  +         L N++ +           E   N 
Sbjct: 114 LV----EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI-----------EMGGN- 157

Query: 250 LTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENN-TDLKTL 308
                 L +         G F         L    L++L +S      +P++    L  L
Sbjct: 158 -----PLENSGFE----PGAF-------DGLK---LNYLRISEAKLTGIPKDLPETLNEL 198

Query: 309 LLANNSL----FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAF 364
            L +N +                KL  L + +N  +  I     ++LP L  L+L  N  
Sbjct: 199 HLDHNKIQAIELEDLLR----YSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 365 NGSIPSSFADMKMLKSLDISYNQLTGAIPE------RMAMGCFSLEILALSNNTLQ-GHI 417
           +  +P+   D+K+L+ + +  N +T  +           +       ++L NN +    +
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 418 FSEKF-NLTNLKRLQLDGNK 436
               F  +T+   +Q    K
Sbjct: 312 QPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 61/291 (20%), Positives = 103/291 (35%), Gaps = 31/291 (10%)

Query: 283 ADLSHLNLSGEFPNWLPENN----TDLKTLLLANNSL----FGSFRMPIHCLQKLATLDV 334
            D + L+L     + L +++      L  L+L NN +      +F      L+KL  L +
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP----LRKLQKLYI 109

Query: 335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE 394
           S N  L  IP  +      L+ L +  N         F+ ++ +  +++  N L  +  E
Sbjct: 110 SKNH-LVEIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE-SLSKCYLLGG 453
             A     L  L +S   L   I  +      L  L LD NK I  I    L +   L  
Sbjct: 166 PGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNK-IQAIELEDLLRYSKLYR 221

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI---- 509
           L L  N +       L  L  L+++ + NN L   +P     L  L+V+ L  N+I    
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 510 ---FGTLPSCLSLGSIEQVHLSKNKIEGQL--ESIIHYYPYLVTLDLSYNR 555
              F  +   +       + L  N +       +        + +     +
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 42/263 (15%)

Query: 1   LHNFTNLEELILVESDL---------HVSQL---------LQSIAS--FSSLKYLSMRGC 40
                +L  L+LV + +          + +L         L  I     SSL  L +   
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133

Query: 41  VLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTIL 100
            ++  +    F   +N+  + M    +E   S  +  +     L  L +S ++L   T +
Sbjct: 134 RIR-KVPKGVFSGLRNMNCIEMGGNPLE--NSGFEPGAFDGLKLNYLRISEAKL---TGI 187

Query: 101 DQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLR 159
            + L     L EL++  N ++   L  L   + L  L +  NQ+      G    L  LR
Sbjct: 188 PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLR 244

Query: 160 ELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSS------PLMHLTSIEELILS 213
           EL++DNN L   +P  L +L  L+V+ +  N +T+ +  +        +       + L 
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLF 302

Query: 214 NNHFQI----PISLEPLFNLSKL 232
           NN        P +   + +   +
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 52/309 (16%), Positives = 99/309 (32%), Gaps = 76/309 (24%)

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
           +  SD  L   +P+ +        + + NN++     ++F  L  L  L L NN I    
Sbjct: 38  VQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94

Query: 514 PSCLS-LGSIEQVHLSKNKI----EGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLP 568
               S L  ++++++SKN +         S       LV L +  NR+          L 
Sbjct: 95  EKAFSPLRKLQKLYISKNHLVEIPPNLPSS-------LVELRIHDNRIRKVPKGVFSGLR 147

Query: 569 QLSYILLANNYI-EGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAP 627
            ++ I +  N +             ++  + +S                           
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK------------------------ 183

Query: 628 TWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIP 687
                    L+  P +                        +  +++ + L  NK+   I 
Sbjct: 184 ---------LTGIPKD------------------------LPETLNELHLDHNKIQ-AIE 209

Query: 688 TQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAV 746
            +     +++  L L HN +      + S L  +  L L  N L  ++P  L  L  L V
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268

Query: 747 FRVAYNNLS 755
             +  NN++
Sbjct: 269 VYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 33/218 (15%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
                N+  + +  + L  S           L YL +    L G          + L  L
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL----PETLNEL 198

Query: 61  VMDRM-LVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCE-LVHLQELYIRDN 118
            +D   +  ++   L       + L  L L ++++    +++ G    L  L+EL++ +N
Sbjct: 199 HLDHNKIQAIELEDLL----RYSKLYRLGLGHNQI---RMIENGSLSFLPTLRELHLDNN 251

Query: 119 DLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLAN 178
            L   +   L ++  LQV+ + +N +T                 +  ND           
Sbjct: 252 KLS-RVPAGLPDLKLLQVVYLHTNNIT----------------KVGVNDFCPVGF--GVK 292

Query: 179 LTSLRVLDVSYNQLT-ENISSSPLMHLTSIEELILSNN 215
                 + +  N +    +  +    +T    +   N 
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 53/265 (20%), Positives = 84/265 (31%), Gaps = 65/265 (24%)

Query: 499 LKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
             +LDL NN I          L  +  + L  NKI    E        L  L +S N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 558 GSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPPCLVNTA 616
             IP   +    L  + + +N I  ++P  +   L+ +  I++  N         L N+ 
Sbjct: 116 -EIPP--NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN--------PLENSG 163

Query: 617 LSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGID 676
              G                                  F    ++Y            + 
Sbjct: 164 FEPG---------------------------------AFDGLKLNY------------LR 178

Query: 677 LSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP 736
           +S  KLT  IP  +     +  L+L HN +            ++  L L +N +   I  
Sbjct: 179 ISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIEN 234

Query: 737 Q-LIVLNTLAVFRVAYNNLSGKIPD 760
             L  L TL    +  N LS ++P 
Sbjct: 235 GSLSFLPTLRELHLDNNKLS-RVPA 258

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           I    + +DL  N ++         L  + AL L +N ++      FS L++++ L +S 
Sbjct: 52  ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 728 NLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRV 762
           N L  +IPP L   ++L   R+  N +  K+P  V
Sbjct: 112 NHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGV 142

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  100 bits (252), Expect = 4e-23
 Identities = 50/267 (18%), Positives = 97/267 (36%), Gaps = 19/267 (7%)

Query: 352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN 411
             +  L+LS N       S       L++L ++ N +   I E       SLE L LS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 412 TLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPES--LSKCYLLGGLYLSDNHLSGKIP-R 467
            L  ++ S  F  L++L  L L GN     + E+   S    L  L + +     KI  +
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 468 WLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI-------FGTLPS--CLS 518
               L  L+++ +  ++L+   P     +  +  L L                 S  CL 
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 519 LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANN 578
           L   +      +++     + +        + ++   L   +   ++++  L  +  + N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 579 YIEGEIPVQLCQ-LKEVRLIDLSHNNL 604
            ++  +P  +   L  ++ I L  N  
Sbjct: 288 QLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.8 bits (236), Expect = 4e-21
 Identities = 52/288 (18%), Positives = 111/288 (38%), Gaps = 24/288 (8%)

Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSL----FGSFRMPIHCLQKLATLDVSNNFF 339
             S  +L+   P+ L      +K+L L+NN +                 L  L +++N  
Sbjct: 37  KGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDL----QRCVNLQALVLTSNG- 87

Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSS-FADMKMLKSLDISYNQLTGAIPERMAM 398
           +  I  +  + L  L HL+LS N    ++ SS F  +  L  L++  N         +  
Sbjct: 88  INTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146

Query: 399 GCFSLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLS 457
               L+IL + N      I  + F  LT L+ L++D +      P+SL     +  L L 
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 458 DNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNE--------FCQLDCLKVLDLSNNSI 509
                  +  ++    +++ + + + +L+    +E          +    + + +++ S+
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

Query: 510 FGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
           F  +     +  + ++  S+N+++   + I      L  + L  N   
Sbjct: 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.9 bits (205), Expect = 4e-17
 Identities = 67/330 (20%), Positives = 119/330 (36%), Gaps = 72/330 (21%)

Query: 180 TSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEP--LFNLSKLKTFNG 237
            +++ LD+S N++T  IS+S L    +++ L+L++N      ++E     +L  L+  + 
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDL 107

Query: 238 EIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNW 297
                    YN       L+++S         F         L++  L+ LNL G   N 
Sbjct: 108 --------SYN------YLSNLS------SSWF-------KPLSS--LTFLNLLG---NP 135

Query: 298 LPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHL 357
                       L   SLF         L KL  L V N      I  +    L  L  L
Sbjct: 136 YKT---------LGETSLFSH-------LTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 358 NLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHI 417
            +  +      P S   ++ +  L +   Q    + E       S+E L L +  L    
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT-- 236

Query: 418 FSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQD 477
               F+ + L   + +          SL K +    + ++D  L  ++ + L  +  L +
Sbjct: 237 ----FHFSELSTGETN----------SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLE 281

Query: 478 IIMPNNNLEGPIPNEFCQLDCLKVLDLSNN 507
           +    N L+      F +L  L+ + L  N
Sbjct: 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 58/355 (16%), Positives = 111/355 (31%), Gaps = 78/355 (21%)

Query: 380 SLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFI 438
               S   L  +IP  +     +++ L LSNN +  +I +       NL+ L L  N  I
Sbjct: 35  ICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNG-I 88

Query: 439 GEIPE-SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEG-PIPNEFCQL 496
             I E S S    L  L LS N+LS     W   L +L  + +  N  +     + F  L
Sbjct: 89  NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 497 DCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRL 556
             L++L + N   F  +                         +     +L  L++  + L
Sbjct: 149 TKLQILRVGNMDTFTKIQ------------------RKDFAGL----TFLEELEIDASDL 186

Query: 557 HGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTA 616
               P  +  +  +S+++L        + + +     V  ++L   +L          + 
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-----FHFSE 241

Query: 617 LSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGID 676
           LS G  +++                                             +   + 
Sbjct: 242 LSTGETNSLIK-----------------------------------------KFTFRNVK 260

Query: 677 LSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731
           ++   L  ++   +  ++ +  L  S N L       F  L  ++ + L  N   
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 35/240 (14%), Positives = 77/240 (32%), Gaps = 44/240 (18%)

Query: 29  FSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDR-MLVEVDTSFLQIVSESMASLRIL 87
             ++K L +    +   +   D     NL+ LV+    +  ++         S+ SL  L
Sbjct: 51  TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFS----SLGSLEHL 105

Query: 88  SLSYSRLNKNTILDQGLCE-LVHLQELYIRDNDLRD----------------SLLWC--- 127
            LSY+ L   + L     + L  L  L +  N  +                  +      
Sbjct: 106 DLSYNYL---SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 128 -------LANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
                   A +T L+ L + ++ L    P     +  +  L +        L + +   +
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 181 SLRVLDVSYNQLTEN-------ISSSPLMHLTSIEELILSNNHFQ-IPISLEPLFNLSKL 232
           S+  L++    L            ++ L+   +   + +++     +   L  +  L +L
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.9 bits (148), Expect = 7e-10
 Identities = 48/356 (13%), Positives = 100/356 (28%), Gaps = 78/356 (21%)

Query: 466 PRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQV 525
           P  L  +  L  II  +   E          D   +   S+ S   ++PS L+  +++ +
Sbjct: 2   PHTLWMVWVLGVIISLS--KEESSNQASLSCDRNGICKGSSGS-LNSIPSGLT-EAVKSL 57

Query: 526 HLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIP 585
            LS N+I     S +     L  L L+ N ++    +    L  L ++ L+ NY+   + 
Sbjct: 58  DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLS 116

Query: 586 VQLCQ-LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNG 644
               + L  +  ++L  N                                          
Sbjct: 117 SSWFKPLSSLTFLNLLGNP---------------------------------YKTLGETS 143

Query: 645 SPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSH 703
                                   LT +  + +       +I  +    LT +  L +  
Sbjct: 144 LFSH--------------------LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 704 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP---------QLIVLNTLAVFRVAYNNL 754
           ++L    P +  +++ +  L L        +           + + L    +    ++ L
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 755 SGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSC--------DDNGLTTVTTEAYT 802
           S    + + +  TF             + L              N L +V    + 
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFD 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.9 bits (246), Expect = 1e-21
 Identities = 53/235 (22%), Positives = 85/235 (36%), Gaps = 36/235 (15%)

Query: 284 DLSHLNLSGEFPNWLPE-----NNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNF 338
                 L GE  N                L L   +L     +P +   ++  L+++ N 
Sbjct: 35  KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS---SLPDNLPPQITVLEITQNA 91

Query: 339 FLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAM 398
            L  +P         L +L+   N  + ++P   A    LK LD+  NQLT  +PE  A 
Sbjct: 92  -LISLPELPA----SLEYLDACDNRLS-TLPELPA---SLKHLDVDNNQLT-MLPELPA- 140

Query: 399 GCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 458
               LE +   NN L      E    T+L+ L +  N+ +  +PE       L  L +S 
Sbjct: 141 ---LLEYINADNNQLTM--LPEL--PTSLEVLSVRNNQ-LTFLPELPES---LEALDVST 189

Query: 459 NHLSGKIPRWLGSLLALQDIIMP----NNNLEGPIPNEFCQLDCLKVLDLSNNSI 509
           N L   +P         ++  +      N +   IP     LD    + L +N +
Sbjct: 190 NLLES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 1e-16
 Identities = 61/332 (18%), Positives = 97/332 (29%), Gaps = 81/332 (24%)

Query: 165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ-IPISL 223
            N + G+     +         +      E +S      +    EL L+  +   +P +L
Sbjct: 19  YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL 78

Query: 224 EPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNA 283
            P   ++ L                                                   
Sbjct: 79  PP--QITVL--------------------------------------------------- 85

Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHI 343
           +++   L       LPE    L+ L   +N L  +       L+    LDV NN  L  +
Sbjct: 86  EITQNALIS-----LPELPASLEYLDACDNRL-STLPELPASLKH---LDVDNN-QLTML 135

Query: 344 PVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL 403
           P         L ++N   N     +P        L+ L +  NQLT  +PE       SL
Sbjct: 136 PELPA----LLEYINADNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPELPE----SL 182

Query: 404 EILALSNN---TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 460
           E L +S N   +L         +       +   N+ I  IPE++        + L DN 
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNP 241

Query: 461 LSGKIPRWLGSLLALQDIIMPNNNLEGPIPNE 492
           LS +I   L    A  D   P          +
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.3 bits (190), Expect = 9e-15
 Identities = 55/341 (16%), Positives = 99/341 (29%), Gaps = 82/341 (24%)

Query: 401 FSLEILALSNNTLQGHIFSEKFN-LTNLKRLQLDGNKFIGEIPESLSKCYL--LGGLYLS 457
           FSL   +  N       +++ F+     ++  L G     E    L +C +     L L+
Sbjct: 11  FSLSQNSFYNTISG--TYADYFSAWDKWEKQALPGEN-RNEAVSLLKECLINQFSELQLN 67

Query: 458 DNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL 517
             +LS                          +P+       + VL+++ N++  +LP   
Sbjct: 68  RLNLSS-------------------------LPDNLPPQ--ITVLEITQNAL-ISLPE-- 97

Query: 518 SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN 577
              S+E +    N++    E        L  LD+  N+L   +P     L  ++     N
Sbjct: 98  LPASLEYLDACDNRLSTLPELP----ASLKHLDVDNNQLT-MLPELPALLEYIN---ADN 149

Query: 578 NYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN-TALSEGYYDAVAPTWDHASAPA 636
           N +   +P     L+    + + +N L+  +P    +  AL               S   
Sbjct: 150 NQLT-MLPELPTSLEV---LSVRNNQLT-FLPELPESLEAL-------------DVSTNL 191

Query: 637 LSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI 696
           L   P                             +        N++T  IP  I  L   
Sbjct: 192 LESLPA------------------VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232

Query: 697 RALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 737
             + L  N L+  I  + S                     Q
Sbjct: 233 CTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.4 bits (185), Expect = 3e-14
 Identities = 51/296 (17%), Positives = 91/296 (30%), Gaps = 63/296 (21%)

Query: 456 LSDNHLSGKIPRWLGSLLALQDIIMPNNNLEG--PIPNEFCQLDCLKVLDLSNNSIFGTL 513
              N +SG    +  +    +   +P  N      +  E C ++    L L+  ++  +L
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQLNRLNL-SSL 74

Query: 514 PSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYI 573
           P  L    I  + +++N +    E        L  LD   NRL  ++P     L  L   
Sbjct: 75  PDNL-PPQITVLEITQNALISLPELP----ASLEYLDACDNRLS-TLPELPASLKHLD-- 126

Query: 574 LLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN-TALSEGYYDAVAPTWDHA 632
            + NN +   +P     L+    I+  +N L+  +P    +   L               
Sbjct: 127 -VDNNQLT-MLPELPALLEY---INADNNQLT-MLPELPTSLEVL-------------SV 167

Query: 633 SAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGY 692
               L++ P                          +  S+  +D+S N L   +P     
Sbjct: 168 RNNQLTFLPE-------------------------LPESLEALDVSTNLLE-SLPAVPVR 201

Query: 693 LTRIRA----LNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 744
                          N +T  IP    +L    ++ L  N L  +I   L      
Sbjct: 202 NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.2 bits (182), Expect = 8e-14
 Identities = 54/333 (16%), Positives = 112/333 (33%), Gaps = 63/333 (18%)

Query: 489 IPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVT 548
             + + + +   +   + N     L  CL +    ++ L++  +    +++    P +  
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSSLPDNL---PPQITV 84

Query: 549 LDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI 608
           L+++ N L  S+P     L  L      +N +   +P     LK    +D+ +N L+  +
Sbjct: 85  LEITQNALI-SLPELPASLEYLD---ACDNRLS-TLPELPASLKH---LDVDNNQLT-ML 135

Query: 609 PPCLVN-TALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGR 667
           P        +             +A    L+  P                          
Sbjct: 136 PELPALLEYI-------------NADNNQLTMLPEL------------------------ 158

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIES----L 723
             TS+  + +  N+LT  +P     L     L++S N L  ++P         E      
Sbjct: 159 -PTSLEVLSVRNNQLT-FLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIFF 212

Query: 724 DLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783
               N +   IP  ++ L+      +  N LS +I + ++Q  T + D +    +     
Sbjct: 213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ-TAQPDYHGPRIYFSMSD 270

Query: 784 LSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSF 816
             ++     L    T  + EN++ D      +F
Sbjct: 271 GQQNTLHRPLADAVTAWFPENKQSDVSQIWHAF 303

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.8 bits (168), Expect = 4e-12
 Identities = 57/362 (15%), Positives = 95/362 (26%), Gaps = 91/362 (25%)

Query: 83  SLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLR---DSLLWCLANMTSLQVLNV 139
                +L     N+   L +  C +    EL +   +L    D+L         + VL +
Sbjct: 35  KWEKQALPGENRNEAVSLLKE-CLINQFSELQLNRLNLSSLPDNLP------PQITVLEI 87

Query: 140 ASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSS 199
             N L  + P        L  L   +N L  +LP       SL+ LDV  NQLT  +   
Sbjct: 88  TQNALI-SLPELPAS---LEYLDACDNRLS-TLP---ELPASLKHLDVDNNQLTM-LPEL 138

Query: 200 PLMHLTSIEELILSNNHFQ-IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTS 258
           P      +E +   NN    +P       +L  L                          
Sbjct: 139 P----ALLEYINADNNQLTMLPELPT---SLEVL-------------------------- 165

Query: 259 ISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFG- 317
                                     + +  L      +LPE    L+ L ++ N L   
Sbjct: 166 -------------------------SVRNNQL-----TFLPELPESLEALDVSTNLLESL 195

Query: 318 --SFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADM 375
                   H  +         N  + HIP  I + L     + L  N  + S       +
Sbjct: 196 PAVPVRNHHSEETEIFFRCREN-RITHIPENILS-LDPTCTIILEDNPLS-SRI--RESL 250

Query: 376 KMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGN 435
               +    +                   +          +  S+   + +    +   N
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHAN 310

Query: 436 KF 437
            F
Sbjct: 311 TF 312

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.1 bits (153), Expect = 2e-10
 Identities = 44/261 (16%), Positives = 79/261 (30%), Gaps = 49/261 (18%)

Query: 4   FTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMD 63
             +LE L     D  +S L +     +SLK+L +    L   L          LE++   
Sbjct: 99  PASLEYLDA--CDNRLSTLPELP---ASLKHLDVDNNQLT-MLP----ELPALLEYI--- 145

Query: 64  RMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLR-- 121
                 D + L ++ E   SL +LS+     N+ T L +       L+ L +  N L   
Sbjct: 146 ----NADNNQLTMLPELPTSLEVLSVRN---NQLTFLPE---LPESLEALDVSTNLLESL 195

Query: 122 -DSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
               +    +  +        N++T + P     L     + +++N L   +   L+  T
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 181 SLRVL----------------------DVSYNQLTENISSSPLMHLTSIEELILSNNHFQ 218
           +                          D       EN  S       + E    +N    
Sbjct: 255 AQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA 314

Query: 219 IPISLEPLFNLSKLKTFNGEI 239
               L    +      F  ++
Sbjct: 315 FLDRLSDTVSARNTSGFREQV 335

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 57/218 (26%)

Query: 547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPV-QLCQLKEVRLIDLSHNNLS 605
           ++ +  YN + G+  ++     +     L        + + + C + +   + L+  NLS
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 606 ---GHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSY 662
               ++PP +    +++                AL   P                     
Sbjct: 73  SLPDNLPPQITVLEITQN---------------ALISLPEL------------------- 98

Query: 663 YYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIES 722
                   S+  +D   N+L+  +P     L     L++ +N LT  +P   + L   E 
Sbjct: 99  ------PASLEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALL---EY 144

Query: 723 LDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760
           ++   N L   +P     L  L    V  N L+  +P+
Sbjct: 145 INADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPE 177

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 53/196 (27%)

Query: 564 IDKLPQLSYILLANN--YIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN--TALSE 619
           I+    LS     N       +      + ++  L   + N     +  CL+N  + L  
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQ- 65

Query: 620 GYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSC 679
                        +   LS  P N                        +   ++ ++++ 
Sbjct: 66  ------------LNRLNLSSLPDN------------------------LPPQITVLEITQ 89

Query: 680 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI 739
           N L   +P     L     L+   N L+ T+P   ++LK    LD+  N L   +P    
Sbjct: 90  NALI-SLPELPASLEY---LDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPA 140

Query: 740 VLNTLAVFRVAYNNLS 755
           +L  +       N L+
Sbjct: 141 LLEYI---NADNNQLT 153

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 56/290 (19%), Positives = 93/290 (32%), Gaps = 36/290 (12%)

Query: 322 PIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSL 381
           P  C      +  ++   L  +P  I         L L  N         F  +  L  L
Sbjct: 2   PSRCSCSGTEIRCNSKG-LTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKL 57

Query: 382 DISYNQLT-GAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGE 440
            +S N L+      +   G  SL+ L LS N +   + S    L  L+ L    +  + +
Sbjct: 58  SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQ 115

Query: 441 IPES--LSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNN-LEGPIPNEFCQLD 497
           + E         L  L +S  H           L +L+ + M  N+  E  +P+ F +L 
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 498 CLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
            L  LDLS   +   L                                L  L++S+N   
Sbjct: 176 NLTFLDLSQCQL-EQLSPTAFNSL----------------------SSLQVLNMSHNNFF 212

Query: 558 GSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ--LKEVRLIDLSHNNLS 605
                    L  L  +  + N+I      Q  Q     +  ++L+ N+ +
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 59/284 (20%), Positives = 95/284 (33%), Gaps = 57/284 (20%)

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDL--RGSLPLCLANLTSLRVLDVSY 189
           +S   L + SN+L       F +L  L +L + +N L  +G         TSL+ LD+S+
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 190 NQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNS 249
           N +     SS  + L  +E L   +++ +         +L  L                 
Sbjct: 88  NGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-------------- 131

Query: 250 LTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLL 309
                                             D+SH +    F        + L+ L 
Sbjct: 132 ----------------------------------DISHTHTRVAFNGIF-NGLSSLEVLK 156

Query: 310 LANNSLFGSF-RMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSI 368
           +A NS   +F       L+ L  LD+S    L  +       L  L  LN+S N F    
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 369 PSSFADMKMLKSLDISYNQLTGAIPERMAMGCF-SLEILALSNN 411
              +  +  L+ LD S N +     ++       SL  L L+ N
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 47/248 (18%), Positives = 77/248 (31%), Gaps = 35/248 (14%)

Query: 79  ESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLN 138
           + +  L  LSLS + L+      Q       L+ L +  N +  ++      +  L+ L+
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107

Query: 139 VASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENIS 197
              + L        F  L  L  L I +   R +       L+SL VL ++ N   EN  
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 198 SSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLT 257
                 L ++  L LS    +  +S     +LS L+  N          +N         
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLN--------MSHN------NFF 212

Query: 258 SISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFG 317
           S+                  + L   D S  ++       L    + L  L L  N    
Sbjct: 213 SLD----------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN---- 258

Query: 318 SFRMPIHC 325
                  C
Sbjct: 259 ----DFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 45/221 (20%), Positives = 77/221 (34%), Gaps = 36/221 (16%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
               T+L+ L L  S   V  +  +      L++L  +   LK       F         
Sbjct: 74  DFGTTSLKYLDL--SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-------- 123

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
                              S+ +L  L +S++        +     L  L+ L +  N  
Sbjct: 124 -------------------SLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 121 RDSLLW-CLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLAN 178
           +++ L      + +L  L+++  QL     P  F  L  L+ L + +N+           
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 179 LTSLRVLDVSYNQLTENISSSPLMHL-TSIEELILSNNHFQ 218
           L SL+VLD S N +        L H  +S+  L L+ N F 
Sbjct: 222 LNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 42/210 (20%), Positives = 74/210 (35%), Gaps = 15/210 (7%)

Query: 284 DLSHLNLS-GEFPNWLPENNTDLKTLLLANNSLF---GSFRMPIHCLQKLATLDVSNNFF 339
            LS   LS     +      T LK L L+ N +     +F      L++L  LD  ++  
Sbjct: 58  SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL----GLEQLEHLDFQHSNL 113

Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
                  +   L  L++L++S      +    F  +  L+ L ++ N         +   
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 400 CFSLEILALSNN---TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYL 456
             +L  L LS      L    F+   +L++L+ L +  N F             L  L  
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230

Query: 457 SDNHLSGKIPRWLGSLL-ALQDIIMPNNNL 485
           S NH+     + L     +L  + +  N+ 
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 49/284 (17%), Positives = 98/284 (34%), Gaps = 67/284 (23%)

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI-FGT 512
           +  +   L+  +P   G   +   + + +N L+      F +L  L  L LS+N + F  
Sbjct: 12  IRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 513 LPSC--LSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP--NWIDKLP 568
             S       S++ + LS N +   + S       L  LD  ++ L   +   +    L 
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLR 126

Query: 569 QLSYILLANNYIEGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAP 627
            L Y+ +++ +        +   L  + ++ ++ N+                        
Sbjct: 127 NLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSF----------------------- 162

Query: 628 TWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIP 687
                       F P+           FT            L +++ +DLS  +L  ++ 
Sbjct: 163 ---------QENFLPDI----------FTE-----------LRNLTFLDLSQCQLE-QLS 191

Query: 688 TQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 730
                 L+ ++ LN+SHNN        +  L  ++ LD S N +
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT--GTIPTTFSNLKQIESLDL 725
           I +S + ++L  NKL          LT++  L+LS N L+  G    +      ++ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 726 SYNLLHGKIPPQLIVLNTLAVFRVAYNNLS 755
           S+N +   +    + L  L      ++NL 
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 675 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK- 733
           I  +   LT  +PT I   +    L L  N L       F  L Q+  L LS N L  K 
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 734 -IPPQLIVLNTLAVFRVAYNNLS 755
                     +L    +++N + 
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI 91

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 91.6 bits (228), Expect = 3e-21
 Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 11/161 (6%)

Query: 76  IVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQ 135
           I    M SL  ++L+   +   T    G+    ++++L I +    +     ++ +++L+
Sbjct: 38  ITEAQMNSLTYITLANINVTDLT----GIEYAHNIKDLTINNIHATN--YNPISGLSNLE 91

Query: 136 VLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTEN 195
            L +    +T +  P    L  L  L I ++    S+   +  L  +  +D+SYN    +
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 196 ISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
           I   PL  L  ++ L +  +          + +  KL    
Sbjct: 152 I--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 21/173 (12%)

Query: 25  SIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVS----ES 80
           + A  +SL Y++         L   +  +   +E+      + ++  + +   +      
Sbjct: 39  TEAQMNSLTYIT---------LANINVTDLTGIEYAHN---IKDLTINNIHATNYNPISG 86

Query: 81  MASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVA 140
           +++L  L +    +  + I    L  L  L  L I  +   DS+L  +  +  +  ++++
Sbjct: 87  LSNLERLRIMGKDVTSDKI--PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 141 SNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 193
            N    +  P    L  L+ L I  + +     +   +   L  L      + 
Sbjct: 145 YNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGI--EDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 25/162 (15%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482
            + +L  + L     + ++   +   + +  L +++ H +   P  +  L  L+ + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIH 541
            ++          L  L +LD+S+++   ++ + ++ L  +  + LS N     +  +  
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT 157

Query: 542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGE 583
             P L +L++ ++ +H      I+  P+L+ +   +  I G+
Sbjct: 158 L-PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 25/192 (13%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 365 NGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNL 424
           + +   + A M  L  + ++   +T             L  +                  
Sbjct: 33  SSTANITEAQMNSLTYITLANINVT------------DLTGIE---------------YA 65

Query: 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNN 484
            N+K L ++           +S    L  L +    ++      L  L +L  + + ++ 
Sbjct: 66  HNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYP 544
            +  I  +   L  +  +DLS N     +    +L  ++ +++  + +       I  +P
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY--RGIEDFP 181

Query: 545 YLVTLDLSYNRL 556
            L  L      +
Sbjct: 182 KLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 33/233 (14%), Positives = 72/233 (30%), Gaps = 59/233 (25%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
            +           +  +  A + SL  + ++   +T     + + +  +I++L ++N H 
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHA 78

Query: 218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ 277
               +  P+  LS L+                                            
Sbjct: 79  T---NYNPISGLSNLERL------------------------------------------ 93

Query: 278 HDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNN 337
                  +   +++ +    L    T L  L +++++   S    I+ L K+ ++D+S N
Sbjct: 94  ------RIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 338 FFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 390
             +  I       LP L  LN+  +  +        D   L  L      + G
Sbjct: 147 GAITDI--MPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           L+++  + +    +T +    +  LT +  L++SH+    +I T  + L ++ S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLS 755
                I P L  L  L    + ++ + 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 495 QLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN 554
           Q++ L  + L+N ++   L       +I+ + ++         + I     L  L +   
Sbjct: 42  QMNSLTYITLANINV-TDLTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGK 98

Query: 555 RLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP 610
            +       +  L  L+ + ++++  +  I  ++  L +V  IDLS+N     I P
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
             ++  + ++    T   P  I  L+ +  L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSGKI 758
                I  ++  L  +    ++YN     I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 14/147 (9%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           +    N+++L +             I+  S+L+ L + G  +       +     +L  L
Sbjct: 62  IEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLL 117

Query: 61  VMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDND 119
            +      +   + +     ++  +  + LSY   N        L  L  L+ L I+ + 
Sbjct: 118 DISHSAHDDSILTKI----NTLPKVNSIDLSY---NGAITDIMPLKTLPELKSLNIQFDG 170

Query: 120 LRDSLLWCLANMTSLQVLNVASNQLTG 146
           + D     + +   L  L   S  + G
Sbjct: 171 VHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 8/141 (5%)

Query: 474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIE 533
           A +   +  +     IP+            L  +S      +   + S+  + L+   + 
Sbjct: 2   AAEQTGLKASQDNVNIPDS--TFKAYLNGLLGQSST--ANITEAQMNSLTYITLANINVT 57

Query: 534 GQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKE 593
             L  I  Y   +  L ++        P  I  L  L  + +    +  +    L  L  
Sbjct: 58  -DLTGI-EYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113

Query: 594 VRLIDLSHNNLSGHIPPCLVN 614
           + L+D+SH+     I   +  
Sbjct: 114 LTLLDISHSAHDDSILTKINT 134

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           + S++ I L+   +T ++ T I Y   I+ L +++ + T   P   S L  +E L +   
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760
            +     P L  L +L +  ++++     I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 97.1 bits (241), Expect = 6e-21
 Identities = 62/347 (17%), Positives = 129/347 (37%), Gaps = 36/347 (10%)

Query: 7   LEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRML 66
           + E I V + +     +    +F+     +++   +      Q+  E  +++ ++ +   
Sbjct: 1   MGETITVSTPIKQ---IFPDDAFAETIKDNLKKKSVTD-AVTQN--ELNSIDQIIANNSD 54

Query: 67  VEVDTSFLQIVSESMASLRILSLSYSRLNKNTILD-QGLCELVHLQELYIRDNDLRDSLL 125
           ++     +Q     + ++  L L+      N + D + L  L +L  L++ +N ++D  L
Sbjct: 55  IK-SVQGIQ----YLPNVTKLFLNG-----NKLTDIKPLTNLKNLGWLFLDENKIKD--L 102

Query: 126 WCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVL 185
             L ++  L+ L++  N ++     G   L  L  LY+ NN +     L  + LT L  L
Sbjct: 103 SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITVL--SRLTKLDTL 158

Query: 186 DVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETES 245
            +  NQ++      PL  LT ++ L LS NH      L  L  L  L             
Sbjct: 159 SLEDNQIS---DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNK 212

Query: 246 HYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDL 305
             N  +      ++  +   DG      +  +   ++ D    N+    P +  E +   
Sbjct: 213 PINHQSNLVVPNTVKNT---DG----SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIF 265

Query: 306 KTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLP 352
              +    +           L+++ T+    +  +    VE GT + 
Sbjct: 266 YQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRIT 312

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.2 bits (210), Expect = 3e-17
 Identities = 49/260 (18%), Positives = 89/260 (34%), Gaps = 20/260 (7%)

Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT--GAIPERMAMGCFSLEILAL 408
               +  NL +   + +   +  ++  +  +  + + +     I         ++  L L
Sbjct: 20  FAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIKSVQGIQ-----YLPNVTKLFL 72

Query: 409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRW 468
           + N L         NL NL  L LD NK I ++  SL     L  L L  N +S  I   
Sbjct: 73  NGNKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNGIS-DIN-G 126

Query: 469 LGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLS 528
           L  L  L+ + + NN +         +L  L  L L +N I   +     L  ++ ++LS
Sbjct: 127 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLS 183

Query: 529 KNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQL 588
           KN I   L ++      L  L+L          N    L   + +   +  +     +  
Sbjct: 184 KNHIS-DLRALAGL-KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

Query: 589 CQLKEVRLIDLSHNNLSGHI 608
               E   +       +  +
Sbjct: 242 DGDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.8 bits (191), Expect = 5e-15
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 44/248 (17%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           +    N+ +L L          L  I   ++L                      KNL  L
Sbjct: 61  IQYLPNVTKLFL------NGNKLTDIKPLTNL----------------------KNLGWL 92

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
            +D   ++ D S L    + +  L+ LSL ++ ++       GL  L  L+ LY+ +N +
Sbjct: 93  FLDENKIK-DLSSL----KDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKI 143

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
            D  +  L+ +T L  L++  NQ++         L  L+ LY+  N +   L   LA L 
Sbjct: 144 TD--ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS-DLR-ALAGLK 197

Query: 181 SLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIY 240
           +L VL++   +   N   +   +L     +  ++     P  +    +  K         
Sbjct: 198 NLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE 256

Query: 241 AETESHYN 248
              E  + 
Sbjct: 257 FTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.7 bits (188), Expect = 2e-14
 Identities = 51/305 (16%), Positives = 100/305 (32%), Gaps = 73/305 (23%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
           + E    +  ++   P            ++    +T+         L SI+++I +N+  
Sbjct: 1   MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDI 55

Query: 218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ 277
           +   S++ +  L  +             + N      +LT I                  
Sbjct: 56  K---SVQGIQYLPNVTKLFL--------NGN------KLTDIK----------------- 81

Query: 278 HDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNN 337
                  L++L               +L  L L  N +       +  L+KL +L + +N
Sbjct: 82  ------PLTNL--------------KNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHN 119

Query: 338 FFLGHI-PVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERM 396
                I  +    +LP L  L L  N    +  +  + +  L +L +  NQ++  +P   
Sbjct: 120 ----GISDINGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQISDIVPL-- 171

Query: 397 AMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYL 456
             G   L+ L LS N +          L NL  L+L   + + +     S   +   +  
Sbjct: 172 -AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 457 SDNHL 461
           +D  L
Sbjct: 229 TDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 2e-11
 Identities = 47/256 (18%), Positives = 82/256 (32%), Gaps = 23/256 (8%)

Query: 300 ENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIP-VEIGTYLPGLMHLN 358
           +   ++  L L  N L  +   P+  L+ L  L +  N     I  +     L  L  L+
Sbjct: 62  QYLPNVTKLFLNGNKL--TDIKPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLS 115

Query: 359 LSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF 418
           L  N  +  I +    +  L+SL +  N++T             L+ L+L +N +     
Sbjct: 116 LEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITVLS---RLTKLDTLSLEDNQISD--I 168

Query: 419 SEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDI 478
                LT L+ L L  N  I ++  +L+    L  L L       K      +L+    +
Sbjct: 169 VPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 479 IMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLES 538
              + +L  P              D    ++   LP   +  S                 
Sbjct: 227 KNTDGSLVTPEIISDDG-------DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 279

Query: 539 IIHYYPYLVTLDLSYN 554
                P      +SY+
Sbjct: 280 GRVTQPLKEVYTVSYD 295

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 4e-04
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           L  +  + L  N ++ +I   + +L ++ +L L +N +T    T  S L ++++L L  N
Sbjct: 108 LKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 163

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLS 755
            +   I P L  L  L    ++ N++S
Sbjct: 164 QIS-DIVP-LAGLTKLQNLYLSKNHIS 188

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 12/208 (5%)

Query: 329 LATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQL 388
              + +  N  + H+P         L  L L  N       ++F  + +L+ LD+S N  
Sbjct: 34  SQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 389 TGAIPERMAMGCFSLEILALSNN---TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE-S 444
             ++      G   L  L L       L   +F     L  L+ L L  N  +  +P+ +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNA-LQALPDDT 148

Query: 445 LSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL 504
                 L  L+L  N +S    R    L +L  +++  N +    P+ F  L  L  L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 505 SNNSIFGTLPSCL--SLGSIEQVHLSKN 530
             N++   LP+     L +++ + L+ N
Sbjct: 209 FANNL-SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.7 bits (223), Expect = 7e-20
 Identities = 57/243 (23%), Positives = 81/243 (33%), Gaps = 34/243 (13%)

Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
           L  +PV I         + L  N  +    +SF   + L  L +  N L   I      G
Sbjct: 23  LQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTG 78

Query: 400 CFSLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNKFIGEIPE-SLSKCYLLGGLYLS 457
              LE L LS+N     +    F  L  L  L LD    + E+          L  LYL 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQ 137

Query: 458 DNHLSGKIP-RWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSC 516
           DN L   +P      L  L  + +  N +       F  L  L  L L  N +     + 
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-----AH 191

Query: 517 LSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILL 575
           +   +     L +                L+TL L  N L  ++P      L  L Y+ L
Sbjct: 192 VHPHAFR--DLGR----------------LMTLYLFANNLS-ALPTEALAPLRALQYLRL 232

Query: 576 ANN 578
            +N
Sbjct: 233 NDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 12/195 (6%)

Query: 27  ASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDR--MLVEVDTSFLQIVSESMASL 84
            +  +L  L +   VL   +    F     LE L +     L  VD +        +  L
Sbjct: 53  RACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH----GLGRL 107

Query: 85  RILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQL 144
             L L    L    +       L  LQ LY++DN L+        ++ +L  L +  N++
Sbjct: 108 HTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165

Query: 145 TGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMH 203
           + + P   F  L  L  L +  N +    P    +L  L  L +  N L+  + +  L  
Sbjct: 166 S-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAP 223

Query: 204 LTSIEELILSNNHFQ 218
           L +++ L L++N + 
Sbjct: 224 LRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 54/244 (22%), Positives = 81/244 (33%), Gaps = 47/244 (19%)

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
            + Q + +  N+++      F     L  L++ +N L          L  L  LD+S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEP--LFNLSKLKTFNGEIYAETESHYNS 249
              ++  +    L  +  L L     Q    L P     L+ L+              N 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLY--------LQDN- 139

Query: 250 LTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSG----EFPNWLPENNTDL 305
                 L ++         TF        DL N  L+HL L G      P         L
Sbjct: 140 -----ALQALP------DDTF-------RDLGN--LTHLFLHGNRISSVPERAFRGLHSL 179

Query: 306 KTLLLANNSL----FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSR 361
             LLL  N +      +FR     L +L TL +  N  L  +P E    L  L +L L+ 
Sbjct: 180 DRLLLHQNRVAHVHPHAFR----DLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLND 234

Query: 362 NAFN 365
           N + 
Sbjct: 235 NPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 7/190 (3%)

Query: 425 TNLKRLQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNN 483
              +R+ L GN+ I  +P  S   C  L  L+L  N L+         L  L+ + + +N
Sbjct: 32  AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 484 NLEGPIPNE-FCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESII 540
                +    F  L  L  L L    +   L   L   L +++ ++L  N ++   +   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 541 HYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLS 600
                L  L L  NR+          L  L  +LL  N +    P     L  +  + L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 601 HNNLSGHIPP 610
            NNLS  +P 
Sbjct: 210 ANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           L ++  + L  N L   +P      L  +  L L  N ++      F  L  ++ L L  
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 728 NLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPDRV-AQFSTFEEDSYEGNPFLC 780
           N +   + P     L  L    +  NNLS  +P    A     +      NP++C
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           I  +   I L  N+++            +  L L  N L       F+ L  +E LDLS 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 728 NLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPDRV 762
           N     + P     L  L    +    L  ++   +
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 24/151 (15%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLS 726
           L  +  +DLS N     +       L R+  L+L    L   +    F  L  ++ L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 727 YNLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPDRV--------------AQFSTFEED 771
            N L   +P      L  L    +  N +S  +P+R                + +     
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 772 SYEGNPFLCGLPLSKSCDDNGLTTVTTEAYT 802
           ++     L  L L      N L+ + TEA  
Sbjct: 196 AFRDLGRLMTLYLF----ANNLSALPTEALA 222

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.7 bits (225), Expect = 5e-20
 Identities = 55/305 (18%), Positives = 91/305 (29%), Gaps = 33/305 (10%)

Query: 284 DLSHLNLSGEFPNW-------------LPENNTDLKTLLLANNSLFGSFRMPIH-CLQKL 329
           +    N S   P+W             L      L+ LL   ++     +         L
Sbjct: 11  ESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSL 70

Query: 330 ATLDVSNNFFLGHIPVEIGTYL--PGLMHLNLSRNAFNGSIPSSFADMKM--LKSLDISY 385
             L V        I       L   GL  L L      G+ P    +     L  L++  
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 386 NQLTGAIPERMAMGCF---SLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIP 442
                       +  +    L++L+++          +      L  L L  N  +GE  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 443 ESLSKCYL----LGGLYLSDNH---LSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQ 495
              + C L    L  L L +      SG       + + LQ + + +N+L        C 
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 496 -LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN 554
               L  L+LS   +   +P  L    +  + LS N+++          P +  L L  N
Sbjct: 251 WPSQLNSLNLSFTGL-KQVPKGLP-AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGN 306

Query: 555 RLHGS 559
               S
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.6 bits (217), Expect = 7e-19
 Identities = 54/294 (18%), Positives = 87/294 (29%), Gaps = 28/294 (9%)

Query: 176 LANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF 235
                SL  L    +   +    + ++   S++ L +        I    L  L      
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG----- 93

Query: 236 NGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFP 295
                       + L  +  L ++ ++G              + LN  ++S         
Sbjct: 94  -----------ISGLQ-ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA 141

Query: 296 NWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVE---IGTYLP 352
                    LK L +A           +     L+TLD+S+N  LG   +         P
Sbjct: 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201

Query: 353 GLMHLNLSRNAFN---GSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALS 409
            L  L L         G   +  A    L+ LD+S+N L  A           L  L LS
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 410 NNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 463
              L+  +         L  L L  N+ +   P S  +   +G L L  N    
Sbjct: 262 FTGLK-QVPKGLP--AKLSVLDLSYNR-LDRNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 6e-15
 Identities = 40/224 (17%), Positives = 74/224 (33%), Gaps = 12/224 (5%)

Query: 6   NLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQ--DFHEFKNLEHLVMD 63
           +LE L+              I    SLK L++R   +   +            L+ L ++
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 64  RMLVEVDTSFLQIVSESMASLRILSLSYSRLNK--NTILDQGLCELVHLQELYIRDNDLR 121
             L    T+   ++  +   L IL+L           + +        L+ L I      
Sbjct: 104 N-LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 122 DSLLWCLANMTSLQVLNVASNQLTGN--FPPGFCELVL--LRELYIDNNDLR---GSLPL 174
           +     +    +L  L+++ N   G        C L    L+ L + N  +    G    
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 175 CLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ 218
             A    L+ LD+S+N L +   +      + +  L LS    +
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 8e-15
 Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 22/260 (8%)

Query: 378 LKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFS---EKFNLTNLKRLQLDG 434
           L+ L    +           +   SL+ L +    +   I         ++ L+ L L+ 
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 435 NKFIGEIPESLSKCYLLGGLYLSDNHLS-GKIPRWLGSL-----LALQDIIMPNNNLEGP 488
            +  G  P  L +        L+  ++S      WL  L       L+ + +   +    
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 489 IPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-----LGSIEQVHLSKNK---IEGQLESII 540
              +      L  LDLS+N   G      +       +++ + L         G   ++ 
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 541 HYYPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL 599
                L  LDLS+N L  +      D   QL+ + L+   ++    V      ++ ++DL
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ---VPKGLPAKLSVLDL 281

Query: 600 SHNNLSGHIPPCLVNTALSE 619
           S+N L    P       +  
Sbjct: 282 SYNRLD-RNPSPDELPQVGN 300

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.9 bits (176), Expect = 1e-13
 Identities = 58/320 (18%), Positives = 102/320 (31%), Gaps = 66/320 (20%)

Query: 87  LSLSYSRLNKNTILDQG----LCELVHLQELYIRDNDLRDSLLWCLA---NMTSLQVLNV 139
            SL Y     +T  D G    + + + L+ L +R   +   +L+       ++ LQ L +
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 140 ASNQLTGNFPPGFCELVL--LRELYIDNNDLRGSLP----LCLANLTSLRVLDVSYNQLT 193
            + ++TG  PP   E     L  L + N            L       L+VL ++     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 194 ENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPK 253
            N S   +    ++  L LS+N       L       K                      
Sbjct: 163 -NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP-------------------- 201

Query: 254 FQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANN 313
             L  ++L                   N      +       + L      L+ L L++N
Sbjct: 202 -TLQVLALR------------------NA----GMETPSGVCSALAAARVQLQGLDLSHN 238

Query: 314 SLFGSFRMPIHC--LQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSS 371
           SL         C    +L +L++S    L  +P  +      L  L+LS N  +   PS 
Sbjct: 239 SL-RDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL---PAKLSVLDLSYNRLD-RNPS- 291

Query: 372 FADMKMLKSLDISYNQLTGA 391
             ++  + +L +  N    +
Sbjct: 292 PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 9e-12
 Identities = 66/377 (17%), Positives = 101/377 (26%), Gaps = 102/377 (27%)

Query: 387 QLTGAIPERMAMGCFSLEILALSNNT-LQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL 445
              GA    +  G  SLE L    +T      F++     +LKRL +   +    I    
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 446 SKCYLLGG---LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL 502
            +   + G   L L +  ++G  P  L                             L +L
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPD----------------------LNIL 126

Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562
           +L N S          L                        P L  L ++          
Sbjct: 127 NLRNVSWATRDAWLAELQQ-------------------WLKPGLKVLSIAQAHSLNFSCE 167

Query: 563 WIDKLPQLSYILLANNYIEGEIPV--QLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEG 620
            +   P LS + L++N   GE  +   LC LK   L  L+  N     P  + +   +  
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA- 226

Query: 621 YYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCN 680
                                                              + G+DLS N
Sbjct: 227 ------------------------------------------------RVQLQGLDLSHN 238

Query: 681 KLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI 739
            L          + +++ +LNLS   L        + L     LDLSYN L     P   
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDRN--PSPD 293

Query: 740 VLNTLAVFRVAYNNLSG 756
            L  +    +  N    
Sbjct: 294 ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 46/283 (16%), Positives = 85/283 (30%), Gaps = 43/283 (15%)

Query: 484 NLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYY 543
           N   P P+     +CL     ++  ++G   S   L           +    ++S+    
Sbjct: 16  NFSDPKPDWSSAFNCL---GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS--- 69

Query: 544 PYLVTLDLSYNRLHGSIPNWIDKL---PQLSYILLANNYIEGEIPVQLCQLKEVRLIDLS 600
             L  L +   R+   I     ++     L  + L N  + G  P  L +     L  L+
Sbjct: 70  --LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN 127

Query: 601 HNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNM 660
             N+S                               L+       P  K  ++       
Sbjct: 128 LRNVSWATRDAW------------------------LAELQQWLKPGLKVLSIAQAHSLN 163

Query: 661 SYYYRGRILTSMSGIDLSCNKLTGEIP----TQIGYLTRIRALNLSHNNLT---GTIPTT 713
               + R+  ++S +DLS N   GE              ++ L L +  +    G     
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 714 FSNLKQIESLDLSYNLLHGKIPPQLIV-LNTLAVFRVAYNNLS 755
            +   Q++ LDLS+N L            + L    +++  L 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.8 bits (218), Expect = 5e-19
 Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 35/240 (14%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
                N  ++   +S++       + A    +  LS  G  +            + L +L
Sbjct: 15  DPALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVT------TIEGVQYLNNL 65

Query: 61  VMDRMLVEVDTSFLQIVS----ESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIR 116
           +       ++    QI      +++  +  L LS + L         +  L  ++ L + 
Sbjct: 66  I------GLELKDNQITDLAPLKNLTKITELELSGNPLKN----VSAIAGLQSIKTLDLT 115

Query: 117 DNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCL 176
              + D  +  LA +++LQVL +  NQ+T         L  L+ L I N  +    PL  
Sbjct: 116 STQITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTPL-- 169

Query: 177 ANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
           ANL+ L  L    N+++     SPL  L ++ E+ L NN       + PL N S L    
Sbjct: 170 ANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVT 223

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 56/298 (18%), Positives = 107/298 (35%), Gaps = 27/298 (9%)

Query: 94  LNKNTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGF 152
                I        L +  ++    +++ D      A++  +  L+     +T     G 
Sbjct: 4   TQPTAINVIFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGV 59

Query: 153 CELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELIL 212
             L  L  L + +N +   L   L NLT +  L++S N L    + S +  L SI+ L L
Sbjct: 60  QYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDL 114

Query: 213 SNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPK 272
           ++        L  L NL  L     +I     ++ + L     L  +S+       +   
Sbjct: 115 TSTQITDVTPLAGLSNLQVLYLDLNQI-----TNISPLAGLTNLQYLSIG--NAQVSDLT 167

Query: 273 FLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATL 332
            L +   L         +S   P     +  +L  + L NN +  S   P+     L  +
Sbjct: 168 PLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQI--SDVSPLANTSNLFIV 222

Query: 333 DVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSI-PSSFADMKMLKSLDISYNQLT 389
            ++N      I  +   Y   L+  N+ +      I P++ +D     S ++++N  +
Sbjct: 223 TLTNQ----TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.6 bits (194), Expect = 6e-16
 Identities = 51/283 (18%), Positives = 100/283 (35%), Gaps = 24/283 (8%)

Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
           L   + +   ++        + AD+  + +L      +T     +      +L  L L +
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQ---YLNNLIGLELKD 72

Query: 411 NTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLG 470
           N +     +   NLT +  L+L GN  +  +  +++    +  L L+   ++   P  L 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 471 SLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKN 530
            L  LQ + +  N +   I      L  L+ L + N  +   L    +L  +  +    N
Sbjct: 127 GLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKADDN 183

Query: 531 KIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ 590
           KI   +  +    P L+ + L  N++    P  +     L  + L N  I  +       
Sbjct: 184 KIS-DISPLASL-PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF---Y 236

Query: 591 LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHAS 633
              + + ++        I P    T    G Y +   TW+  S
Sbjct: 237 NNNLVVPNVVKGPSGAPIAP---ATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 52/257 (20%), Positives = 90/257 (35%), Gaps = 19/257 (7%)

Query: 322 PIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSL 381
           P   L     +    +     +       L G+  L+        +I      +  L  L
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TI-EGVQYLNNLIGL 68

Query: 382 DISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEI 441
           ++  NQ+T   P         +  L LS N L+    S    L ++K L L   + I ++
Sbjct: 69  ELKDNQITDLAP---LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQ-ITDV 122

Query: 442 PESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKV 501
              L+    L  LYL  N ++   P  L  L  LQ + + N  +    P     L  L  
Sbjct: 123 -TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177

Query: 502 LDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP 561
           L   +N I   +    SL ++ +VHL  N+I     S +     L  + L+   +     
Sbjct: 178 LKADDNKI-SDISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPV 234

Query: 562 NWIDKLPQLSYILLANN 578
            + + L   + +   + 
Sbjct: 235 FYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 54/315 (17%), Positives = 97/315 (30%), Gaps = 71/315 (22%)

Query: 175 CLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKT 234
               L +   +    + +T    +     L  I  L           ++E +  L+ L  
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 235 FNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEF 294
                        N +T                                DL+ L      
Sbjct: 68  LE--------LKDNQIT--------------------------------DLAPL------ 81

Query: 295 PNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGL 354
                +N T +  L L+ N L       I  LQ + TLD+++       P+     L  L
Sbjct: 82  -----KNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTPLA---GLSNL 131

Query: 355 MHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ 414
             L L  N    +  S  A +  L+ L I   Q++   P         L  L   +N + 
Sbjct: 132 QVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTPLA---NLSKLTTLKADDNKIS 186

Query: 415 GHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA 474
               S   +L NL  + L  N+ I ++   L+    L  + L++  ++ +   +  +L+ 
Sbjct: 187 D--ISPLASLPNLIEVHLKNNQ-ISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLVV 242

Query: 475 LQDIIMPNNNLEGPI 489
              +  P+     P 
Sbjct: 243 PNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 44/302 (14%), Positives = 92/302 (30%), Gaps = 71/302 (23%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
             ++    +++  ++    A+L  +  L      +T   +   + +L ++  L L +N  
Sbjct: 21  AIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQI 75

Query: 218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ 277
                L PL NL+K+               N L                           
Sbjct: 76  T---DLAPLKNLTKITELEL--------SGNPLK-------------------------- 98

Query: 278 HDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNN 337
                 ++S +                +KTL L +  +      P+  L  L  L +  N
Sbjct: 99  ------NVSAI-----------AGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLN 139

Query: 338 FFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMA 397
                 P+     L  L +L++     +  + +  A++  L +L    N+++   P    
Sbjct: 140 QITNISPLA---GLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKISDISPLA-- 192

Query: 398 MGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLS 457
               +L  + L NN +     S   N +NL  + L       +     +   +   +   
Sbjct: 193 -SLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 458 DN 459
             
Sbjct: 250 SG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 46/286 (16%), Positives = 97/286 (33%), Gaps = 50/286 (17%)

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
           +    ++++  +      L  +  +      +   I      L+ L  L+L +N I   L
Sbjct: 24  IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IEG-VQYLNNLIGLELKDNQI-TDL 78

Query: 514 PSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYI 573
               +L  I ++ LS N ++  + +I      + TLDL+  ++    P  +  L  L  +
Sbjct: 79  APLKNLTKITELELSGNPLK-NVSAIAGL-QSIKTLDLTSTQITDVTP--LAGLSNLQVL 134

Query: 574 LLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHAS 633
            L  N I   I   L  L  ++ + + +  +S  + P    + L+             A 
Sbjct: 135 YLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLK----------AD 181

Query: 634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYL 693
              +S   P  S                       L ++  + L  N+++   P  +   
Sbjct: 182 DNKISDISPLAS-----------------------LPNLIEVHLKNNQISDVSP--LANT 216

Query: 694 TRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI 739
           + +  + L++  +T       +NL      ++        I P  I
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLV---VPNVVKGPSGAPIAPATI 259

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 30/198 (15%), Positives = 75/198 (37%), Gaps = 29/198 (14%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           +    +++ L L  + +     +  +A  S+L+ L +    +       +      L +L
Sbjct: 103 IAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQIT------NISPLAGLTNL 153

Query: 61  VMDRMLVEVDTSFLQIVS----ESMASLRILSLSYSRLNKNTILD-QGLCELVHLQELYI 115
                   +     Q+       +++ L  L         N I D   L  L +L E+++
Sbjct: 154 Q------YLSIGNAQVSDLTPLANLSKLTTLKADD-----NKISDISPLASLPNLIEVHL 202

Query: 116 RDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLC 175
           ++N + D  +  LAN ++L ++ + +  +T    P F    L+    +         P  
Sbjct: 203 KNNQISD--VSPLANTSNLFIVTLTNQTITN--QPVFYNNNLVVPNVVKGPSGAPIAPAT 258

Query: 176 LANLTSLRVLDVSYNQLT 193
           +++  +    ++++N  +
Sbjct: 259 ISDNGTYASPNLTWNLTS 276

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 54/216 (25%), Positives = 85/216 (39%), Gaps = 20/216 (9%)

Query: 303 TDLKTLLLANNSL----FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLN 358
              K L L+ N L      SF        +L  LD+S    +  I       L  L  L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLI 82

Query: 359 LSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHI 417
           L+ N    S+   +F+ +  L+ L      L  ++         +L+ L +++N +Q   
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 418 FSEKF-NLTNLKRLQLDGNKFIGEIPE----SLSK-CYLLGGLYLSDNHLSGKIPRWLGS 471
             E F NLTNL+ L L  NK I  I       L +   L   L LS N ++  I      
Sbjct: 141 LPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 472 LLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNN 507
            + L+++ +  N L+      F +L  L+ + L  N
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 28/224 (12%)

Query: 368 IPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN---TLQGHIFSEKFNL 424
           +P S       K+LD+S+N L   +          L++L LS     T++   +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75

Query: 425 TNLKRLQLDGNKFIGEIPESL-SKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNN 483
           ++L  L L GN  I  +     S    L  L   + +L+      +G L  L+++ + +N
Sbjct: 76  SHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 484 NL-EGPIPNEFCQLDCLKVLDLSNNSI-------FGTLPSCLSLGSIEQVHLSKNKIEGQ 535
            +    +P  F  L  L+ LDLS+N I          L     L     + LS N +   
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL--NLSLDLSLNPMN-F 191

Query: 536 LESIIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANN 578
           ++        L  L L  N+L  S+P+ I D+L  L  I L  N
Sbjct: 192 IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 50/247 (20%), Positives = 90/247 (36%), Gaps = 39/247 (15%)

Query: 82  ASLRILSLSYSRLNKNTILDQG-LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVA 140
            S + L LS+   N    L          LQ L +   +++        +++ L  L + 
Sbjct: 28  FSTKNLDLSF---NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 141 SNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLP-LCLANLTSLRVLDVSYNQLTENISS 198
            N +  +   G F  L  L++L     +L  SL    + +L +L+ L+V++N +      
Sbjct: 85  GNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 199 SPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTS 258
               +LT++E L LS+N  Q  I    L  L ++   N  +        N       +  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDL----SLN------PMNF 191

Query: 259 ISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGS 318
           I        G F +    +  L+   L  +      P+ + +  T L+ + L  N     
Sbjct: 192 I------QPGAFKEIRLKELALDTNQLKSV------PDGIFDRLTSLQKIWLHTN----- 234

Query: 319 FRMPIHC 325
              P  C
Sbjct: 235 ---PWDC 238

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 11/165 (6%)

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
           L LS N L         S   LQ + +    ++      +  L  L  L L+ N I  +L
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSL 91

Query: 514 PSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNW--IDKLPQ 569
                  L S++++   +  +       I +   L  L++++N +  S         L  
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTN 150

Query: 570 LSYILLANN---YIEGEIPVQLCQLKEVRL-IDLSHNNLSGHIPP 610
           L ++ L++N    I       L Q+  + L +DLS N ++  I P
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 49/255 (19%), Positives = 76/255 (29%), Gaps = 65/255 (25%)

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPS--CLSLGSIEQVHLSKNKIEGQLESI 539
            N L       F     L+VLDLS   I  T+      SL  +  + L+ N I+      
Sbjct: 37  FNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95

Query: 540 IHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANNYIEGEIPV-----QLCQLKE 593
                 L  L      L  S+ N+    L  L  + +A+N I+    +      L  L+ 
Sbjct: 96  FSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEH 153

Query: 594 VRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV 653
              +DLS N +           ++       +                            
Sbjct: 154 ---LDLSSNKI----------QSIYCTDLRVL---------------------------H 173

Query: 654 QFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT 713
           Q    N+S             +DLS N +   I        R++ L L  N L       
Sbjct: 174 QMPLLNLS-------------LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 714 FSNLKQIESLDLSYN 728
           F  L  ++ + L  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLS 726
           +  S   +DLS N L             ++ L+LS   +  TI    + +L  + +L L+
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 727 YNLLH---GKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQ 764
            N +          L  L  L    VA       + +    
Sbjct: 85  GNPIQSLALGAFSGLSSLQKL----VAVETNLASLENFPIG 121

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           L+ +S + L+ N +   +       L+ ++ L     NL         +LK ++ L++++
Sbjct: 75  LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 728 NLLH 731
           NL+ 
Sbjct: 134 NLIQ 137

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 85/509 (16%), Positives = 151/509 (29%), Gaps = 123/509 (24%)

Query: 83  SLRILSLSYSRLNKNTILDQGLCELV----HLQELYIRDNDLRD----SLLWCLANMTSL 134
            ++ L +         + D    EL+      Q + + D  L +     +   L    +L
Sbjct: 4   DIQSLDIQ-----CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 135 QVLNVASNQLTGNFPPGFCELVL-----LRELYIDNNDL--RGSLPLC--LANLTSLRVL 185
             LN+ SN+L         + +      +++L + N  L   G   L   L  L +L+ L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 186 DVSYNQLT----ENISSSPLMHLTSIEELILSNNHFQIPISLEPLFN-LSKLKTFNGEIY 240
            +S N L     + +    L     +E+L L         S EPL + L           
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS-AASCEPLASVLRAKPD------ 171

Query: 241 AETESHYNSLTPKFQLTSISLSGY--GDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWL 298
                             +++S     + G   + L      +   L  L L       +
Sbjct: 172 ---------------FKELTVSNNDINEAGV--RVLCQGLKDSPCQLEALKLES---CGV 211

Query: 299 PE-----------NNTDLKTLLLANNSLFGS-----FRMPIHCLQKLATLDVSNNFFLGH 342
                        +   L+ L L +N L            +H   +L TL +        
Sbjct: 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC----G 267

Query: 343 IPVEIGTYL-------PGLMHLNLSRNAFNGSIPSSFADM-----KMLKSLDISYNQLTG 390
           I  +    L         L  L+L+ N           +        L+SL +     T 
Sbjct: 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

Query: 391 AIPERMA---MGCFSLEILALSNNTLQG---HIFSE--KFNLTNLKRLQLDGNKFIGE-- 440
           A     +        L  L +SNN L+        +      + L+ L L     + +  
Sbjct: 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSS 386

Query: 441 ---IPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLD 497
              +  +L   + L  L LS+N L          +L L + +     L            
Sbjct: 387 CSSLAATLLANHSLRELDLSNNCLGDA------GILQLVESVRQPGCL------------ 428

Query: 498 CLKVLDLSNNSIFGTLPSCLSLGSIEQVH 526
            L+ L L +     +      L ++E+  
Sbjct: 429 -LEQLVLYDIYW--SEEMEDRLQALEKDK 454

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 3e-15
 Identities = 87/517 (16%), Positives = 159/517 (30%), Gaps = 114/517 (22%)

Query: 5   TNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVL--KGALH-GQDFHEFKNLEHLV 61
            +++ L +   +L  ++  + +      + + +  C L                 L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 62  MDRMLVEVDTSFLQIVSESMAS--LRILSLSYSRLNKNTILDQG-------LCELVHLQE 112
           +     E+    +  V + + +   +I  L    L    +   G       L  L  LQE
Sbjct: 63  LRS--NELGDVGVHCVLQGLQTPSCKIQKL---SLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 113 LYIRDNDLRDSLLWCLANM-----TSLQVLNVASNQLTGNFPPGFCELVL----LRELYI 163
           L++ DN L D+ L  L          L+ L +    L+         ++      +EL +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 164 DNNDL--RGSLPLCLA---NLTSLRVLDVSYNQLTE---NISSSPLMHLTSIEELILSNN 215
            NND+   G   LC     +   L  L +    +T          +    S+ EL L +N
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 216 HFQ----IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFP 271
                    +    L   S+L+T               +T K     +            
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLW--------IWECGITAK-GCGDLCRV--------- 279

Query: 272 KFLYHQHDLNNADLSHLNLSGE----FPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQ 327
             L  +  L    L+   L  E        L E    L++L + + S   +      C  
Sbjct: 280 --LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA------CCS 331

Query: 328 KLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADM-----KMLKSLD 382
             +++   N                 L+ L +S N    +              +L+ L 
Sbjct: 332 HFSSVLAQN---------------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 383 ISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKF----I 438
           ++   ++ +        C SL    L  N              +L+ L L  N      I
Sbjct: 377 LADCDVSDS-------SCSSL-AATLLAN-------------HSLRELDLSNNCLGDAGI 415

Query: 439 GEIPESLSKC-YLLGGLYLSDNHLSGKIPRWLGSLLA 474
            ++ ES+ +   LL  L L D + S ++   L +L  
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.5 bits (176), Expect = 4e-13
 Identities = 71/488 (14%), Positives = 142/488 (29%), Gaps = 112/488 (22%)

Query: 180 TSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFN-LSKLKTFNGE 238
             ++ LD+   +L++   +  L  L   + + L +         + + + L         
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPA---- 57

Query: 239 IYAETESHYNSLTPKFQLTSISLSGY--GDGGTFPKFLYHQHDLNNADLSHLNLSGEFPN 296
                            L  ++L     GD G     +       +  +  L+L      
Sbjct: 58  -----------------LAELNLRSNELGDVGV--HCVLQGLQTPSCKIQKLSLQN---C 95

Query: 297 WLPE-----------NNTDLKTLLLANNSLFGS-----FRMPIHCLQKLATLDVSNNFFL 340
            L                 L+ L L++N L  +         +    +L  L +      
Sbjct: 96  CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155

Query: 341 GHIPVEIGTYL---PGLMHLNLSRNAFNGSIPSSFADM-----KMLKSLDISYNQLTGAI 392
                 + + L   P    L +S N  N +               L++L +    +T   
Sbjct: 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD- 214

Query: 393 PERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL-- 450
                  C  L    +++               +L+ L L  NK        L    L  
Sbjct: 215 ------NCRDL-CGIVASK-------------ASLRELALGSNKLGDVGMAELCPGLLHP 254

Query: 451 ---LGGLYLSDNHLSGKIPRWLGSLLA----LQDIIMPNNNLEGPIPNEFCQL----DC- 498
              L  L++ +  ++ K    L  +L     L+++ +  N L        C+      C 
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 499 LKVLDLSNNSIFGTLPSCLSLGS-------IEQVHLSKNKIEGQ-----LESIIHYYPYL 546
           L+ L + + S   T   C    S       + ++ +S N++E        + +      L
Sbjct: 315 LESLWVKSCSF--TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372

Query: 547 VTLDLSYNRLH----GSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEV-----RLI 597
             L L+   +      S+   +     L  + L+NN +     +QL +           +
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 598 DLSHNNLS 605
            L     S
Sbjct: 433 VLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 8e-11
 Identities = 64/384 (16%), Positives = 128/384 (33%), Gaps = 82/384 (21%)

Query: 302 NTDLKTLLLANNSL-FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYL---PGLMHL 357
           + D+++L +    L    +   +  LQ+   + + +         +I + L   P L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 358 NLSRNAFNGS---------------------------------IPSSFADMKMLKSLDIS 384
           NL  N                                      + S+   +  L+ L +S
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 385 YNQLTG----AIPERMAMGCFSLEILALSNNTLQ----GHIFSEKFNLTNLKRLQLDGNK 436
            N L       + E +      LE L L   +L       + S      + K L +  N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 437 FIGE----IPESLSKCYL-LGGLYLSDNHLSGKIPRWLGSLLA----LQDIIMPNNNLEG 487
                   + + L      L  L L    ++    R L  ++A    L+++ + +N L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 488 PIPNEFCQ-----LDCLKVLDLSNNSIFGTLPSCLSLG-------SIEQVHLSKNKIEGQ 535
               E C         L+ L +    I  T   C  L        S++++ L+ N++  +
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGI--TAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 536 -----LESIIHYYPYLVTLDLSYNRLHG----SIPNWIDKLPQLSYILLANNYIEGEIPV 586
                 E+++     L +L +              + + +   L  + ++NN +E     
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 587 QLCQ-LKEV----RLIDLSHNNLS 605
           +LCQ L +     R++ L+  ++S
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 56/249 (22%), Positives = 95/249 (38%), Gaps = 38/249 (15%)

Query: 2   HNFTNLEELILVE---SDLHVSQLLQSIASFSSLKYLSMRGCVLKG----ALHGQDFHEF 54
            +   LE L L     +  +   L   +AS +SL+ L++    L       L     H  
Sbjct: 196 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS 255

Query: 55  KNLEHLVMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQG---LCELV-- 108
             L  L +    +       L  V  +  SL+ LSL+      N + D+G   LCE +  
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-----NELGDEGARLLCETLLE 310

Query: 109 ---HLQELYIRDNDLRD----SLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVL---- 157
               L+ L+++               LA    L  L +++N+L        C+ +     
Sbjct: 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370

Query: 158 -LRELYIDNNDLR----GSLPLCLANLTSLRVLDVSYNQLTE----NISSSPLMHLTSIE 208
            LR L++ + D+      SL   L    SLR LD+S N L +     +  S       +E
Sbjct: 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 430

Query: 209 ELILSNNHF 217
           +L+L + ++
Sbjct: 431 QLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 59/428 (13%), Positives = 118/428 (27%), Gaps = 101/428 (23%)

Query: 354 LMHLNLSRNAFN-GSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG---CFSLEILALS 409
           +  L++     +          ++  + + +    LT A  + ++       +L  L L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 410 NNTLQG---HIFSE--KFNLTNLKRLQLDGNKF----IGEIPESLSKCYLLGGLYLSDNH 460
           +N L     H   +  +     +++L L          G +  +L     L  L+LSDN 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 461 LSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLG 520
           L          L  L + ++                  L+ L L   S+  +  SC  L 
Sbjct: 125 LGDA------GLQLLCEGLLDPQCR-------------LEKLQLEYCSL--SAASCEPLA 163

Query: 521 -------SIEQVHLSKNKIEGQ-----LESIIHYYPYLVTLDLSYNRLH----GSIPNWI 564
                    +++ +S N I         + +      L  L L    +       +   +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 565 DKLPQLSYILLANNYIEGE-----IPVQLCQLKEVRLIDLSHNNLS----GHIPPCL-VN 614
                L  + L +N +         P  L     +R + +    ++    G +   L   
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 615 TALSE---GYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTS 671
            +L E      +          A  L             ET+               L S
Sbjct: 284 ESLKELSLAGNEL-----GDEGARLLC------------ETLLEPGCQ---------LES 317

Query: 672 MSGIDLSCNKLTGE----IPTQIGYLTRIRALNLSHNNLTGTIPTTFS-----NLKQIES 722
              + +     T        + +     +  L +S+N L                  +  
Sbjct: 318 ---LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374

Query: 723 LDLSYNLL 730
           L L+   +
Sbjct: 375 LWLADCDV 382

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.1 bits (195), Expect = 6e-16
 Identities = 48/266 (18%), Positives = 89/266 (33%), Gaps = 37/266 (13%)

Query: 320 RMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSS-FADMKML 378
            +P    +    L       L  I     +    L  + +S+N     I +  F+++  L
Sbjct: 23  EIPSDLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 379 KSLDIS-YNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGNK 436
             + I   N L   I         +L+ L +SN  ++ H+      +      L +  N 
Sbjct: 82  HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI 139

Query: 437 FIGEIPESLSK--CYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNE-F 493
            I  I  +      +    L+L+ N +  +I     +   L ++ + +NN    +PN+ F
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 494 CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553
                  +LD+S   I  +LPS                    LE++      L       
Sbjct: 199 HGASGPVILDISRTRI-HSLPS------------------YGLENLKK----LRARSTYN 235

Query: 554 NRLHGSIPNWIDKLPQLSYILLANNY 579
            +    +P  ++KL  L    L    
Sbjct: 236 LK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 48/280 (17%), Positives = 92/280 (32%), Gaps = 44/280 (15%)

Query: 331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 390
                 +  +  IP ++       + L             +F+    L+ ++IS N +  
Sbjct: 13  VFLCQESK-VTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 391 AIPERMAMGCFSLEILALSNN----TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLS 446
            I   +      L  + +        +    F    NL NL+ L +     I  +P  + 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTG-IKHLP-DVH 123

Query: 447 KCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC-LKVLDLS 505
           K + L  + L                         N N+     N F  L     +L L+
Sbjct: 124 KIHSLQKVLLDIQD---------------------NINIHTIERNSFVGLSFESVILWLN 162

Query: 506 NNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNW 563
            N I   + +         E      N +E     + H     V LD+S  R+H S+P++
Sbjct: 163 KNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY 220

Query: 564 I-DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN 602
             + L +L     +   ++ ++P  L +L  +    L++ 
Sbjct: 221 GLENLKKL--RARSTYNLK-KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 42/284 (14%), Positives = 77/284 (27%), Gaps = 64/284 (22%)

Query: 109 HLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDN-N 166
           +  EL      LR       +    L+ + ++ N +        F  L  L E+ I+  N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPL 226
           +L    P    NL +L+ L +S   +   +     +H      L + +N           
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDN----------- 138

Query: 227 FNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLS 286
                                        + +I         +F    +    L    L+
Sbjct: 139 ---------------------------INIHTIE------RNSFVGLSFESVILW---LN 162

Query: 287 HLNLSGEFPNWLPENNTDLKTLLLANNSL----FGSFRMPIHCLQKLATLDVSNNFFLGH 342
              +  E  N         +  L  NN+L       F            LD+S    +  
Sbjct: 163 KNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG----ASGPVILDISRT-RIHS 216

Query: 343 IPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYN 386
           +P      L  L   +         +P +   +  L    ++Y 
Sbjct: 217 LPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 47/288 (16%), Positives = 95/288 (32%), Gaps = 50/288 (17%)

Query: 133 SLQVLNVASNQLT---GNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSY 189
           S +V     +++T    + P          EL      LR       +    L  +++S 
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRN------AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 63

Query: 190 NQLTENISSSPLMHLTSIEELILSN-NHFQIPISLEPLFNLSKLKTFNGEIYAETESHYN 248
           N + E I +    +L  + E+ +   N+    I+ E   NL  L+               
Sbjct: 64  NDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQYLL--------ISNT 114

Query: 249 SLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTL 308
                  +  +    +         L  Q ++N   +   +  G     L         L
Sbjct: 115 ------GIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVG-----LSFE---SVIL 159

Query: 309 LLANNSL----FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAF 364
            L  N +      +F        +L  L++S+N  L  +P ++     G + L++SR   
Sbjct: 160 WLNKNGIQEIHNSAFN-----GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

Query: 365 NGSIPS-SFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN 411
           + S+PS    ++K L++      +    +         +L   +L+  
Sbjct: 215 H-SLPSYGLENLKKLRARSTYNLKKLPTL-----EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 39/284 (13%), Positives = 89/284 (31%), Gaps = 50/284 (17%)

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
               ++ ++ +IP          ++      L       F     L+ +++S N +   +
Sbjct: 14  FLCQESKVT-EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 514 PSCL--SLGSIEQVHLSK-NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQ 569
            + +  +L  + ++ + K N +           P L  L +S   +   +P+       Q
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQ 129

Query: 570 LSYILLANN----YIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAV 625
              + + +N     IE    V L       ++ L+ N +   I     N    +      
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFE--SVILWLNKNGIQ-EIHNSAFNGTQLD------ 180

Query: 626 APTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE 685
               + +    L   P +           F              +    +D+S  ++   
Sbjct: 181 --ELNLSDNNNLEELPND----------VFHG-----------ASGPVILDISRTRIH-S 216

Query: 686 IPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
           +P+     L ++RA +  +      +PT    L  +    L+Y 
Sbjct: 217 LPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 675 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 734
                +K+T EIP+ +        L      L       FS    +E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 735 PPQ----LIVLNTLAVFRVAYNNLSGKIPDRV 762
                  L  L+ + + +   NNL   I    
Sbjct: 71  EADVFSNLPKLHEIRIEK--ANNLL-YINPEA 99

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 34/248 (13%), Positives = 77/248 (31%), Gaps = 23/248 (9%)

Query: 490 PNEFCQLDC-LKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVT 548
            +  C   C  +V     + +   +PS L   +  ++     K+    +     +  L  
Sbjct: 3   HHRIC--HCSNRVFLCQESKV-TEIPSDLPR-NAIELRFVLTKLRVIQKGAFSGFGDLEK 58

Query: 549 LDLSYNRLHGSIPNWI-DKLPQLSYILLAN-NYIEGEIPVQLCQ-LKEVRLIDLSHNNLS 605
           +++S N +   I   +   LP+L  I +   N +   I  +  Q L  ++ + +S+  + 
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK 117

Query: 606 GHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPN--GSPMGKEETVQFTTKNMSYY 663
            H+P      +L +   D             +     N       +   +      +   
Sbjct: 118 -HLPDVHKIHSLQKVLLDI-------QDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169

Query: 664 YRG--RILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQI 720
           +                 N L  E+P  +    +    L++S   +         NLK++
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228

Query: 721 ESLDLSYN 728
            +      
Sbjct: 229 RARSTYNL 236

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 14/185 (7%)

Query: 303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRN 362
            D   L L+ N L+      +    +L  L++     L  + V+    LP L  L+LS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGT--LPVLGTLDLSHN 87

Query: 363 AFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN---TLQGHIFS 419
               S+P     +  L  LD+S+N+LT ++P     G   L+ L L  N   TL   + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 420 EKFNLTNLKRLQLDGNKFIGEIPESL-SKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDI 478
                  L++L L  N  + E+P  L +    L  L L +N L   IP+       L   
Sbjct: 146 ---PTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 479 IMPNN 483
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)

Query: 108 VHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNND 167
                L++ +N L    L  L   T L  LN+   +LT         L +L  L + +N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88

Query: 168 LRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEP-L 226
           L+ SLPL    L +L VLDVS+N+LT ++    L  L  ++EL L  N  +   +L P L
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK---TLPPGL 143

Query: 227 F-NLSKLKT 234
                KL+ 
Sbjct: 144 LTPTPKLEK 152

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 9/181 (4%)

Query: 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNN 484
            +   L L  N        +L     L  L L    L+ K+    G+L  L  + + +N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ 88

Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHY 542
           L+  +P     L  L VLD+S N +  +LP      LG +++++L  N+++     ++  
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 543 YPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSH 601
            P L  L L+ N L   +P  + + L  L  +LL  N +   IP        +    L  
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

Query: 602 N 602
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 56/262 (21%), Positives = 79/262 (30%), Gaps = 69/262 (26%)

Query: 130 NMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSY 189
            + S   +N     LT   PP          L++  N L       L   T L  L++  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 190 NQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLF-NLSKLKTFNGEIYAETESHYN 248
            +LT          L  +  L LS+N  Q   SL  L   L  L   +          +N
Sbjct: 65  AELT---KLQVDGTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDV--------SFN 110

Query: 249 SLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTL 308
                 +LTS+ L      G                   L               +L+ L
Sbjct: 111 ------RLTSLPL------GAL---------------RGL--------------GELQEL 129

Query: 309 LLANNSL----FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAF 364
            L  N L     G          KL  L ++NN  L  +P  +   L  L  L L  N+ 
Sbjct: 130 YLKGNELKTLPPGLLTP----TPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSL 184

Query: 365 NGSIPSSFADMKMLKSLDISYN 386
             +IP  F    +L    +  N
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH 541
            N L             L  L+L    +   L    +L  +  + LS N+++  L  +  
Sbjct: 40  ENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQ 97

Query: 542 YYPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANNYIEGEIPV----QLCQLKEVRL 596
             P L  LD+S+NRL  S+P      L +L  + L  N ++  +P        +L++   
Sbjct: 98  TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEK--- 152

Query: 597 IDLSHNNLSGHIPP 610
           + L++NNL+  +P 
Sbjct: 153 LSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 48/237 (20%), Positives = 78/237 (32%), Gaps = 71/237 (29%)

Query: 499 LKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRL 556
             +L LS N +  T           + Q++L + ++      +    P L TLDLS+N+L
Sbjct: 33  TTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL 89

Query: 557 HGSIPNWIDKLPQLSYILLANNYIEGEIPV----QLCQLKEVRLIDLSHNNLSGHIPPCL 612
             S+P     LP L+ + ++ N +   +P+     L +L+E   + L  N L        
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE---LYLKGNEL-------- 136

Query: 613 VNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSM 672
               L  G                                                   +
Sbjct: 137 --KTLPPGLLTP--------------------------------------------TPKL 150

Query: 673 SGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
             + L+ N LT E+P  +   L  +  L L  N+L  TIP  F     +    L  N
Sbjct: 151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 21/192 (10%)

Query: 4   FTNLEELILVESDLHVSQLLQSI-ASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVM 62
             +   L L  S+  +     +    ++ L  L++    L      Q       L  L +
Sbjct: 30  PKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDL 84

Query: 63  -DRMLVEVDTSFLQIVSESMASLRILSLSYSRLNK--NTILDQGLCELVHLQELYIRDND 119
               L  +         +++ +L +L +S++RL       L      L  LQELY++ N+
Sbjct: 85  SHNQLQSLPLLG-----QTLPALTVLDVSFNRLTSLPLGALRG----LGELQELYLKGNE 135

Query: 120 LRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLAN 178
           L+      L     L+ L++A+N LT   P G    L  L  L +  N L  ++P     
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193

Query: 179 LTSLRVLDVSYN 190
              L    +  N
Sbjct: 194 SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 43/241 (17%), Positives = 83/241 (34%), Gaps = 64/241 (26%)

Query: 494 CQLDC---LKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLD 550
           C++        ++    ++   LP  L       +HLS+N +     + +  Y  L  L+
Sbjct: 4   CEVSKVASHLEVNCDKRNL-TALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 551 LSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP 610
           L    L   +      LP L  + L++N ++  +P+    L  + ++D+S N L      
Sbjct: 62  LDRAEL-TKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL------ 112

Query: 611 CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT 670
               T+L  G                                                L 
Sbjct: 113 ----TSLPLGALRG--------------------------------------------LG 124

Query: 671 SMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 729
            +  + L  N+L   +P  +     ++  L+L++NNLT       + L+ +++L L  N 
Sbjct: 125 ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 730 L 730
           L
Sbjct: 184 L 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           +    + + LS N L       +   TR+  LNL    LT  +      L  + +LDLS+
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSH 86

Query: 728 NLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRV 762
           N L   +P     L  L V  V++N L+  +P   
Sbjct: 87  NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.6 bits (193), Expect = 3e-15
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 14/196 (7%)

Query: 49  QDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELV 108
           Q F    ++E   + +  +E      ++  E+   L  + L    L+      + L    
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 109 HLQELYIRDNDLRDSLLWC--------LANMTSLQVLNVASNQLTGNFPPGFCELVLLRE 160
            L+ +        D L                 ++VL++A   LT        +L+L+  
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTH 467

Query: 161 LYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIP 220
           L + +N LR +LP  LA L  L VL  S N L    +   + +L  ++EL+L NN  Q  
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLCNNRLQQS 523

Query: 221 ISLEPLFNLSKLKTFN 236
            +++PL +  +L   N
Sbjct: 524 AAIQPLVSCPRLVLLN 539

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.8 bits (170), Expect = 2e-12
 Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 19/224 (8%)

Query: 3   NFTNLEELILVESDLHVSQLLQS-IASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLV 61
           +    E+L   E  +  S +LQS + S   L+ L                     +  L 
Sbjct: 344 DSATDEQLFRCELSVEKSTVLQSELESCKELQELEPEN-------KWCLLTIILLMRALD 396

Query: 62  MDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLR 121
                 E    F  +  +++  +R   L   R            E   ++ L++   DL 
Sbjct: 397 PLLYEKETLQYFSTL--KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454

Query: 122 DSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTS 181
              L  L  +  +  L+++ N+L    PP    L  L  L   +N L  ++   +ANL  
Sbjct: 455 V--LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPR 509

Query: 182 LRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEP 225
           L+ L +  N+L ++ +  PL+    +  L L  N     +  E 
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN----SLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 31/237 (13%)

Query: 162 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSI---EELILSNNHFQ 218
               ++      L +   T L+    S  +L E    +    LT I     L       +
Sbjct: 344 DSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 403

Query: 219 IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQH 278
                  L  +  ++    +         NS+          L       T    L    
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463

Query: 279 DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNF 338
            + + DLSH  L    P  L      L+ L  ++N+L  +    +  L +L  L + NN 
Sbjct: 464 LVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN- 518

Query: 339 FLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPER 395
               +          +  L                    L  L++  N L      +
Sbjct: 519 ---RL-----QQSAAIQPL---------------VSCPRLVLLNLQGNSLCQEEGIQ 552

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 20/213 (9%)

Query: 546 LVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
           L   +LS  +    + + ++   +L  +   N +    I + +  L  +     +    S
Sbjct: 351 LFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 606 G--HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYY 663
               + P                   D   +  L               +    K+++  
Sbjct: 410 TLKAVDPMRAAY-------------LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL 456

Query: 664 YRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESL 723
                L  ++ +DLS N+L   +P  +  L  +  L  S N L   +    +NL +++ L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQEL 513

Query: 724 DLSYNLLHG-KIPPQLIVLNTLAVFRVAYNNLS 755
            L  N L        L+    L +  +  N+L 
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 53/354 (14%), Positives = 101/354 (28%), Gaps = 42/354 (11%)

Query: 260 SLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSF 319
           S   Y          +      +       LS  F   L   +     LL+ + +     
Sbjct: 227 SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVE 286

Query: 320 RMPIHCLQKLATLDVSNNFFLG-------HIPVEIGTYLPGLMHLNLSRNAFNGSIPSSF 372
                   + + + + +            H    I T         L ++          
Sbjct: 287 WRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDS 345

Query: 373 ADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432
           A  + L   ++S  + T  + +     C  L+ L   N      I      L  L   + 
Sbjct: 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 403

Query: 433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNE 492
               F     +++          L    L  +          ++ + + + +L      E
Sbjct: 404 TLQYF--STLKAVDPMRAAYLDDLRSKFLL-ENSVLKMEYADVRVLHLAHKDLTVLCHLE 460

Query: 493 FCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS 552
             QL  +  LDLS+N +                      +   L ++      L  L  S
Sbjct: 461 --QLLLVTHLDLSHNRL--------------------RALPPALAAL----RCLEVLQAS 494

Query: 553 YNRLHGSIPNWIDKLPQLSYILLANNYIEG-EIPVQLCQLKEVRLIDLSHNNLS 605
            N L  ++   +  LP+L  +LL NN ++       L     + L++L  N+L 
Sbjct: 495 DNAL-ENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 16/158 (10%)

Query: 79  ESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLN 138
           ++ A     +L    +      +    EL  + ++   ++D++   +  +  + ++  L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 139 VASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS 198
           +  N+LT   P     L  L  L++D N ++    L   +L  L+ L + +N +++    
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSL--KDLKKLKSLSLEHNGISDI--- 127

Query: 199 SPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
           + L+HL  +E L L NN       +  L  L+KL T +
Sbjct: 128 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLS 162

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
               +  NL + +       +  ++  +  +  + + +             ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNG 77

Query: 411 NTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLG 470
           N L         NL NL  L LD NK + ++  SL     L  L L  N +S  I   L 
Sbjct: 78  NKLTD--IKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 471 SLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKN 530
            L  L+ + + NN +         +L  L  L L +N I   +     L  ++ ++LSKN
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188

Query: 531 KIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI 580
            I   L ++      L  L+L          N    L   + +   +  +
Sbjct: 189 HIS-DLRALAGL-KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 42/233 (18%), Positives = 89/233 (38%), Gaps = 44/233 (18%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           +    N+ +L L  +   ++  ++ +A+  +L +L +    +K         +  +L+ L
Sbjct: 64  IQYLPNVTKLFL--NGNKLTD-IKPLANLKNLGWLFLDENKVK---------DLSSLKDL 111

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
                                  L+ LSL ++ ++       GL  L  L+ LY+ +N +
Sbjct: 112 K---------------------KLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKI 146

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
            D  +  L+ +T L  L++  NQ++         L  L+ LY+  N +       LA L 
Sbjct: 147 TD--ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDLRA--LAGLK 200

Query: 181 SLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLK 233
           +L VL++   +   N   +   +L     +  ++     P  +    +  K  
Sbjct: 201 NLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 252

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 52/306 (16%), Positives = 98/306 (32%), Gaps = 73/306 (23%)

Query: 157 LLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNH 216
           L  E       ++                ++    +T+         L SI+++I +N+ 
Sbjct: 3   LGSETITVPTPIKQIFSD--DAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSD 57

Query: 217 FQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYH 276
            +   S++ +  L  +             + N      +LT I                 
Sbjct: 58  IK---SVQGIQYLPNVTKLFL--------NGN------KLTDIK---------------- 84

Query: 277 QHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSN 336
                   L++L               +L  L L  N +       +  L+KL +L + +
Sbjct: 85  -------PLANL--------------KNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEH 121

Query: 337 NFFLGHIPVEIG-TYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPER 395
           N     I    G  +LP L  L L  N    +  +  + +  L +L +  NQ++  +P  
Sbjct: 122 N----GISDINGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQISDIVP-- 173

Query: 396 MAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLY 455
              G   L+ L LS N +          L NL  L+L   + + +     S   +   + 
Sbjct: 174 -LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 456 LSDNHL 461
            +D  L
Sbjct: 231 NTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 13/183 (7%)

Query: 423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482
                 +  L        +    ++   +  +  +++ +   +   +  L  +  + +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHY 542
           N L   I      L  L  L L  N +   L S   L  ++ + L  N I   +  ++H 
Sbjct: 78  NKLTD-IKP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNGIS-DINGLVHL 133

Query: 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN 602
            P L +L L  N++   I   + +L +L  + L +N I  +I   L  L +++ + LS N
Sbjct: 134 -PQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKN 188

Query: 603 NLS 605
           ++S
Sbjct: 189 HIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 16/190 (8%)

Query: 300 ENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIP-VEIGTYLPGLMHLN 358
           +   ++  L L  N L  +   P+  L+ L  L +  N     +  +     L  L  L+
Sbjct: 65  QYLPNVTKLFLNGNKL--TDIKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLS 118

Query: 359 LSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF 418
           L  N  +  I +    +  L+SL +  N++T             L+ L+L +N +     
Sbjct: 119 LEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISD--I 171

Query: 419 SEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDI 478
                LT L+ L L  N  I ++  +L+    L  L L       K      +L+    +
Sbjct: 172 VPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 479 IMPNNNLEGP 488
              + +L  P
Sbjct: 230 KNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 45/196 (22%), Positives = 69/196 (35%), Gaps = 21/196 (10%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           L N  NL  L L E+ +     L S+     LK LS+    +              LE L
Sbjct: 86  LANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESL 139

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILD-QGLCELVHLQELYIRDND 119
            +    +  D + L      +  L  LSL       N I D   L  L  LQ LY+  N 
Sbjct: 140 YLGNNKIT-DITVL----SRLTKLDTLSLED-----NQISDIVPLAGLTKLQNLYLSKNH 189

Query: 120 LRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANL 179
           + D  L  LA + +L VL + S +           LV+   +   +  L    P  +++ 
Sbjct: 190 ISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDD 245

Query: 180 TSLRVLDVSYNQLTEN 195
                 +V ++     
Sbjct: 246 GDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 477 DIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL 536
           + I     ++    ++          +L   S+     +   L SI+Q+  + + I+  +
Sbjct: 6   ETITVPTPIKQIFSDD--AFAETIKDNLKKKSV-TDAVTQNELNSIDQIIANNSDIK-SV 61

Query: 537 ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRL 596
           + I  Y P +  L L+ N+L   I   +  L  L ++ L  N ++ ++   L  LK+++ 
Sbjct: 62  QGI-QYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKS 116

Query: 597 IDLSHNNLS 605
           + L HN +S
Sbjct: 117 LSLEHNGIS 125

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 22/183 (12%)

Query: 54  FKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQEL 113
             N     + +  V  D        + ++ ++  +   S +        G+    +L+EL
Sbjct: 18  LANAVKQNLGKQSVT-DLVSQ----KELSGVQNFNGDNSNIQSLA----GMQFFTNLKEL 68

Query: 114 YIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLP 173
           ++  N + D  L  L ++T L+ L+V  N+L             L  L++DNN+LR +  
Sbjct: 69  HLSHNQISD--LSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRDTDS 123

Query: 174 LCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLK 233
           L   +L +L +L +  N+L    S   L  L+ +E L L  N      +   L  L K+ 
Sbjct: 124 L--IHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVN 175

Query: 234 TFN 236
             +
Sbjct: 176 WID 178

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 47/298 (15%), Positives = 89/298 (29%), Gaps = 72/298 (24%)

Query: 94  LNKNTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGF 152
                I        L +  +  +    + D  L     ++ +Q  N  ++ +      G 
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGM 59

Query: 153 CELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELIL 212
                L+EL++ +N +    P  L +LT L  L V+ N+L  N++  P   L     L L
Sbjct: 60  QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPSACL---SRLFL 113

Query: 213 SNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPK 272
            NN  +     + L +L  L+  +           N L                      
Sbjct: 114 DNNELR---DTDSLIHLKNLEILS--------IRNNKLK--------------------- 141

Query: 273 FLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATL 332
                       +  L              + L+ L L  N +  +    +  L+K+  +
Sbjct: 142 -----------SIVML-----------GFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWI 177

Query: 333 DVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSI-PSSFADMKMLKSLDISYNQLT 389
           D++          E   Y P L   N  ++     I P   ++        + +    
Sbjct: 178 DLTGQ----KCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 33/183 (18%), Positives = 73/183 (39%), Gaps = 14/183 (7%)

Query: 423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482
            L N  +  L     + ++  S  +   +      ++++   +   +     L+++ + +
Sbjct: 17  GLANAVKQNLGKQS-VTDL-VSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSH 72

Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHY 542
           N +   +      L  L+ L ++ N +     + +    + ++ L  N++    +S+IH 
Sbjct: 73  NQISD-LSP-LKDLTKLEELSVNRNRL--KNLNGIPSACLSRLFLDNNELR-DTDSLIH- 126

Query: 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN 602
              L  L +  N+L  SI   +  L +L  + L  N I       L +LK+V  IDL+  
Sbjct: 127 LKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182

Query: 603 NLS 605
              
Sbjct: 183 KCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 35/236 (14%), Positives = 80/236 (33%), Gaps = 51/236 (21%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
               + ++      S++     L  +  F++LK L +    +          +   L+ L
Sbjct: 37  QKELSGVQNFNGDNSNIQS---LAGMQFFTNLKELHLSHNQIS---------DLSPLKDL 84

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
                                  L  LS++ +RL     +         L  L++ +N+L
Sbjct: 85  T---------------------KLEELSVNRNRLKNLNGI-----PSACLSRLFLDNNEL 118

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
           RD     L ++ +L++L++ +N+L          L  L  L +  N++  +    L  L 
Sbjct: 119 RD--TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGG--LTRLK 172

Query: 181 SLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
            +  +D++  +            +    EL ++N            + +S   ++ 
Sbjct: 173 KVNWIDLTGQKCVNE-------PVKYQPELYITNTVKDPDGRWISPYYISNGGSYV 221

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 20/195 (10%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
           +  FTNL+EL L  + +     L  +   + L+ LS+    LK      +      L  L
Sbjct: 59  MQFFTNLKELHLSHNQISD---LSPLKDLTKLEELSVNRNRLKNL----NGIPSACLSRL 111

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
            +D   +  DT  L      + +L ILS+  ++L         L  L  L+ L +  N++
Sbjct: 112 FLDNNELR-DTDSL----IHLKNLEILSIRNNKLKS----IVMLGFLSKLEVLDLHGNEI 162

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
            +     L  +  +  +++   +          EL +   +   + D R   P  ++N  
Sbjct: 163 TN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK--DPDGRWISPYYISNGG 218

Query: 181 SLRVLDVSYNQLTEN 195
           S     V +      
Sbjct: 219 SYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 48/261 (18%), Positives = 78/261 (29%), Gaps = 67/261 (25%)

Query: 199 SPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTS 258
            P   L +  +  L          L     LS ++ FNG          +++        
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNG--------DNSNIQ------- 54

Query: 259 ISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGS 318
                                     L+ +           +  T+LK L L++N +  S
Sbjct: 55  -------------------------SLAGM-----------QFFTNLKELHLSHNQI--S 76

Query: 319 FRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKML 378
              P+  L KL  L V+ N     +    G     L  L L  N        S   +K L
Sbjct: 77  DLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNN--ELRDTDSLIHLKNL 130

Query: 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFI 438
           + L I  N+L   +          LE+L L  N +          L  +  + L G K +
Sbjct: 131 EILSIRNNKLKSIVMLG---FLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCV 185

Query: 439 GEIPESLSKCYLLGGLYLSDN 459
            E  +   + Y+   +   D 
Sbjct: 186 NEPVKYQPELYITNTVKDPDG 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 37/190 (19%)

Query: 300 ENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNL 359
           +  T+LK L L++N +  S   P+  L KL  L V+ N     +    G     L  L L
Sbjct: 60  QFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFL 113

Query: 360 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFS 419
             N        S   +K L+ L I  N+L             S+ +L             
Sbjct: 114 DNN--ELRDTDSLIHLKNLEILSIRNNKLK------------SIVMLG------------ 147

Query: 420 EKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDII 479
               L+ L+ L L GN+ I      L++   +  + L+      +  ++   L     + 
Sbjct: 148 ---FLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

Query: 480 MPNNNLEGPI 489
            P+     P 
Sbjct: 203 DPDGRWISPY 212

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 33/188 (17%), Positives = 70/188 (37%), Gaps = 10/188 (5%)

Query: 329 LATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQ 387
             TL +     L  IP    + LP +  + +S +     + S SF ++  +  ++I   +
Sbjct: 33  TQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 388 LTGAIPERMAMGCFSLEILALSNNTLQGHI--FSEKFNLTNLKRLQLDGNKFIGEIPESL 445
               I          L+ L + N  L+      ++ ++      L++  N ++  IP + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 446 --SKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNE-FCQL-DCLKV 501
               C     L L +N  +  +  +  +   L  + +  N     I  + F  +     +
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 502 LDLSNNSI 509
           LD+S  S+
Sbjct: 210 LDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 33/228 (14%)

Query: 367 SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN----TLQGHIFSEKF 422
           S+P S       ++L +    L   IP        ++  + +S +     L+ H F    
Sbjct: 28  SLPPS------TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--- 77

Query: 423 NLTNLKRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNHLSGKIP--RWLGSLLALQDII 479
           NL+ +  +++   + +  I  ++L +  LL  L + +  L    P    + S      + 
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136

Query: 480 MPNNNLEGPIP-NEFCQL-DCLKVLDLSNNSIFGTLPSC-LSLGSIEQVHLSKNKIEGQL 536
           + +N     IP N F  L +    L L NN    ++     +   ++ V+L+KNK    L
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNK---YL 192

Query: 537 ESI-----IHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNY 579
             I        Y     LD+S   +  ++P+    L  L  ++  N +
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 7/142 (4%)

Query: 326 LQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIP--SSFADMKMLKSLDI 383
           L K+  +++ N   L +I  +    LP L  L +         P  +      +   L+I
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEI 137

Query: 384 SYNQLTGAIPERMAMG-CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIP 442
           + N    +IP     G C     L L NN     +    FN T L  + L+ NK++  I 
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 443 E-SLSKCY-LLGGLYLSDNHLS 462
           + +    Y     L +S   ++
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 41/246 (16%), Positives = 76/246 (30%), Gaps = 49/246 (19%)

Query: 378 LKSLDISYNQLTGAIPERMAMGCFSLEILALSNN---TLQGHIFSEKFNLTNLKRLQLDG 434
            +   ++   +   IP        S + L L      T+  H FS   NL N+ R+ +  
Sbjct: 13  EEDFRVTCKDIQ-RIPSLPP----STQTLKLIETHLRTIPSHAFS---NLPNISRIYVSI 64

Query: 435 NKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNE-F 493
           +  + ++                             +L  +  I + N      I  +  
Sbjct: 65  DVTLQQLESHS-----------------------FYNLSKVTHIEIRNTRNLTYIDPDAL 101

Query: 494 CQLDCLKVLDLSNNSI--FGTLPSCLSLGSIEQVHLSKNKIEGQLESI-----IHYYPYL 546
            +L  LK L + N  +  F  L    S      + ++ N     + SI            
Sbjct: 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP---YMTSIPVNAFQGLCNET 158

Query: 547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ--LKEVRLIDLSHNNL 604
           +TL L  N    S+  +     +L  + L  N     I             L+D+S  ++
Sbjct: 159 LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

Query: 605 SGHIPP 610
           +  +P 
Sbjct: 218 T-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 42/241 (17%), Positives = 71/241 (29%), Gaps = 48/241 (19%)

Query: 132 TSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSY 189
            S Q L +    L    P   F  L  +  +Y+  +     L      NL+ +  +++  
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 190 NQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNS 249
            +    I    L  L  ++ L + N   ++   L  +++               E   N 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFIL--------EITDNP 141

Query: 250 LTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPE------NNT 303
                 +TSI          F         L N +   L L     N          N T
Sbjct: 142 -----YMTSIP------VNAF-------QGLCN-ETLTLKLYN---NGFTSVQGYAFNGT 179

Query: 304 DLKTLLLANNSLF-----GSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLN 358
            L  + L  N         +F          + LDVS    +  +P +   +L  L+  N
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFG---GVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARN 235

Query: 359 L 359
            
Sbjct: 236 T 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 33/254 (12%), Positives = 78/254 (30%), Gaps = 38/254 (14%)

Query: 490 PNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTL 549
            +  C+    +   ++   I   +PS     S + + L +  +           P +  +
Sbjct: 4   SSPPCECHQEEDFRVTCKDI-QRIPSLPP--STQTLKLIETHLRTIPSHAFSNLPNISRI 60

Query: 550 DLSYNRLHGSIPNWI-DKLPQLSYILLANNYIEGEIPVQLCQ-LKEVRLIDLSHNNLSGH 607
            +S +     + +     L ++++I + N      I     + L  ++ + + +  L   
Sbjct: 61  YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-M 119

Query: 608 IPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGR 667
            P      +    +        +    P ++  P N           F            
Sbjct: 120 FPDLTKVYSTDIFF------ILEITDNPYMTSIPVN----------AFQG---------- 153

Query: 668 ILTSMSG-IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT-TFSNLKQ-IESLD 724
            L + +  + L  N  T  +       T++ A+ L+ N     I    F  +      LD
Sbjct: 154 -LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 725 LSYNLLHGKIPPQL 738
           +S   +   +P + 
Sbjct: 212 VSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 18/197 (9%)

Query: 27  ASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMD--RMLVEVDTSFLQIVSESMASL 84
           ++  ++  + +   V    L    F+    + H+ +   R L  +D   L+     +  L
Sbjct: 52  SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK----ELPLL 107

Query: 85  RILSLSYSRLNKNTILDQGLCE-LVHLQELYIRDNDLRDSL-LWCLANMTS-LQVLNVAS 141
           + L +  + L      D            L I DN    S+ +     + +    L + +
Sbjct: 108 KFLGIFNTGLK--MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 142 NQLTGNFPPGFCELVLLRELYI-DNNDLRGSLPLCLANLTS-LRVLDVSYNQLTENISSS 199
           N  T +          L  +Y+  N  L          + S   +LDVS   +T  + S 
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK 223

Query: 200 PLMHLTSIEELILSNNH 216
            L HL     LI  N  
Sbjct: 224 GLEHLKE---LIARNTW 237

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 18/183 (9%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ-- 414
           L+L  N  +     +F  +  L+ L ++ N+L   +P  +     +LE L +++N LQ  
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 415 -GHIFSEKFNLTNLKRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGKIPRWL 469
              +F     L NL  L+LD N+ +  +P     SL+K   L  L L  N L   +P+ +
Sbjct: 101 PIGVFD---QLVNLAELRLDRNQ-LKSLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGV 152

Query: 470 -GSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHL 527
              L +L+++ + NN L+      F +L  LK L L NN +         SL  ++ + L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 528 SKN 530
            +N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 43/214 (20%)

Query: 132 TSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCL-ANLTSLRVLDVSY 189
              + L++ SN+L+ + P   F  L  LR LY+++N L+ +LP  +   L +L  L V+ 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94

Query: 190 NQLTENISSSPLMHLTSIEELILSNNHFQIPISLEP-LF-NLSKLKTFNGEIYAETESHY 247
           N+L   +       L ++ EL L  N  +   SL P +F +L+KL   +          Y
Sbjct: 95  NKLQA-LPIGVFDQLVNLAELRLDRNQLK---SLPPRVFDSLTKLTYLS--------LGY 142

Query: 248 NSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENN----T 303
           N      +L S+        G F K       L +  L  L L       +PE      T
Sbjct: 143 N------ELQSLP------KGVFDK-------LTS--LKELRLYNNQLKRVPEGAFDKLT 181

Query: 304 DLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNN 337
           +LKTL L NN L          L+KL  L +  N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 45/234 (19%)

Query: 378 LKSLDISYNQLTGAIPERMAMGCF-SLEILALSNNTLQGHIFSEKF-NLTNLKRLQLDGN 435
             S+D S  +LT AIP           + L L +N L   + S+ F  LT L+ L L+ N
Sbjct: 18  KNSVDCSSKKLT-AIPS----NIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDN 71

Query: 436 KFIGEIPE----SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPN 491
           K +  +P      L     L  L+++DN L   +P                         
Sbjct: 72  K-LQTLPAGIFKELKN---LETLWVTDNKLQ-ALP-----------------------IG 103

Query: 492 EFCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTL 549
            F QL  L  L L  N +  +LP  +  SL  +  + L  N+++   + +      L  L
Sbjct: 104 VFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162

Query: 550 DLSYNRLHGSIPNWI-DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN 602
            L  N+L   +P    DKL +L  + L NN ++         L++++++ L  N
Sbjct: 163 RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 50/213 (23%), Positives = 75/213 (35%), Gaps = 40/213 (18%)

Query: 180 TSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEP-LFN-LSKLKTFNG 237
              + LD+  N+L+ ++ S     LT +  L L++N  Q   +L   +F  L  L+T   
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLW- 91

Query: 238 EIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNW 297
                     N      +L ++   G  D       L     L+   L  L      P  
Sbjct: 92  -------VTDN------KLQALP-IGVFDQLVNLAELR----LDRNQLKSL------PPR 127

Query: 298 LPENNTDLKTLLLANNSL----FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPG 353
           + ++ T L  L L  N L     G F      L  L  L + NN  L  +P      L  
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDK----LTSLKELRLYNNQ-LKRVPEGAFDKLTE 182

Query: 354 LMHLNLSRNAFNGSIPSSFADMKMLKSLDISYN 386
           L  L L  N        +F  ++ LK L +  N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 50/237 (21%), Positives = 88/237 (37%), Gaps = 67/237 (28%)

Query: 499 LKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRL 556
            K LDL +N +  +LPS     L  +  ++L+ NK++     I      L TL ++ N+L
Sbjct: 39  TKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 557 HGSIPNWI-DKLPQLSYILLANN---YIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCL 612
             ++P  + D+L  L+ + L  N    +   +   L +L     + L +N L        
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY---LSLGYNEL-------- 145

Query: 613 VNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSM 672
              +L +G +D                                             LTS+
Sbjct: 146 --QSLPKGVFDK--------------------------------------------LTSL 159

Query: 673 SGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
             + L  N+L   +P      LT ++ L L +N L       F +L++++ L L  N
Sbjct: 160 KELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 31/177 (17%)

Query: 2   HNFTNLEELILVESDLHVSQLLQSI-----ASFSSLKYLSMRGCVLKGALHGQDFHEFKN 56
           H  T L  L      L+ ++L Q++         +L+ L +    L+ AL    F +  N
Sbjct: 58  HRLTKLRLL-----YLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVN 110

Query: 57  LEHLVMDRMLVEVDTSFLQIVS------ESMASLRILSLSYSRLNKNTILDQGLCE-LVH 109
           L  L +DR          Q+ S      +S+  L  LSL Y   N+   L +G+ + L  
Sbjct: 111 LAELRLDRN---------QLKSLPPRVFDSLTKLTYLSLGY---NELQSLPKGVFDKLTS 158

Query: 110 LQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
           L+EL + +N L+         +T L+ L + +NQL       F  L  L+ L +  N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 64/463 (13%), Positives = 138/463 (29%), Gaps = 77/463 (16%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCV------LKGALHGQDFHEF 54
             ++T LEE+ L    +    L     SF + K L +  C       L            
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT-----C 155

Query: 55  KNLEHL-VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVH---- 109
           +NL+ L + +  + +V   +L    ++  SL  L++S        +    L  LV     
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE---VSFSALERLVTRCPN 212

Query: 110 LQELYIRDNDLRDSLLWCLANMTSLQVLNVA--SNQLTGNFPPGFCELVL----LRELYI 163
           L+ L +      + L   L     L+ L     + ++  +   G    +     LR L  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISL 223
             + +   LP   +  + L  L++SY  +        L     ++ L + +      I  
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-----IED 327

Query: 224 EPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNA 283
             L  L+                         L  + +          +    + ++   
Sbjct: 328 AGLEVLASTCK--------------------DLRELRVFP-------SEPFVMEPNVALT 360

Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSL-FGSFRMPIHCLQKLATLDVSNNFFLGH 342
           +   +++S   P         L+++L     +   +          +    +        
Sbjct: 361 EQGLVSVSMGCPK--------LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412

Query: 343 IPV----------EIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAI 392
             +           I  +   L  L+LS    +          K ++ L +++   +   
Sbjct: 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472

Query: 393 PERMAMGCFSLEILALSNNTL-QGHIFSEKFNLTNLKRLQLDG 434
              +  GC SL  L + +       + +    L  ++ L +  
Sbjct: 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 66/459 (14%), Positives = 152/459 (33%), Gaps = 61/459 (13%)

Query: 172 LPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLF---- 227
           +    ++ T L  + +    +T++          + + L+LS+        L  +     
Sbjct: 97  IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR 156

Query: 228 NLSKLKTFNGEIYAETESHYNSLTPKF-QLTSISLSGYGDGGTFPKFLYHQHDLNNADLS 286
           NL +L     ++   +    +     +  L S+++S                +++ + L 
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS------------EVSFSALE 204

Query: 287 HLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVE 346
            L               +LK+L L            +    +L  L            V 
Sbjct: 205 RL----------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254

Query: 347 IG-----TYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF 401
            G     +    L  L+   +A    +P+ ++    L +L++SY  +      ++   C 
Sbjct: 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314

Query: 402 SLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 461
            L+ L + +      +        +L+ L++  ++     P  +     L    L    +
Sbjct: 315 KLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE-----PFVMEPNVALTEQGLV--SV 367

Query: 462 SGKIPRWLGSLL---------ALQDIIMPNNNLE----GPIPNEFCQLDCLKVLDLSNNS 508
           S   P+ L S+L         AL  I     N+       I  +      L+ LD+   +
Sbjct: 368 SMGCPK-LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426

Query: 509 IFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG-SIPNWIDKL 567
           I   +  C  L    ++ LS    +   E I  Y   +  L +++       + + +   
Sbjct: 427 I---VEHCKDL---RRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480

Query: 568 PQLSYILLAN-NYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
             L  + + +  + +  +     +L+ +R + +S  ++S
Sbjct: 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 12/141 (8%)

Query: 78  SESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVL 137
           S        + L +  +     +D  L  L   + L +  N++    +  L+ M +L++L
Sbjct: 19  SVVATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRIL 75

Query: 138 NVASNQLTGNFPPGFCELVLLRELYIDNN---DLRGSLPLCLANLTSLRVLDVSYNQLTE 194
           ++  N +             L EL+I  N    L G     +  L +LRVL +S N++T 
Sbjct: 76  SLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITN 129

Query: 195 NISSSPLMHLTSIEELILSNN 215
                 L  L  +E+L+L+ N
Sbjct: 130 WGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 21/153 (13%)

Query: 423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482
            L   K L L  N  I +I  SLS    L  L L  N +  KI         L+++ +  
Sbjct: 46  TLKACKHLALSTNN-IEKI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISY 102

Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSI--FGTLPSCLSLGSIEQVHLSKNKIEGQLESII 540
           N +   +     +L  L+VL +SNN I  +G +    +L  +E + L+ N +    +   
Sbjct: 103 NQIAS-LSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160

Query: 541 HYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYI 573
               Y + +              + +LP L  +
Sbjct: 161 ATSEYRIEV--------------VKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 35/191 (18%), Positives = 75/191 (39%), Gaps = 38/191 (19%)

Query: 3   NFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVM 62
             T  E++ L      + ++  ++++  + K+L+         L   +  +  +L  +  
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLA---------LSTNNIEKISSLSGMEN 71

Query: 63  DRMLVEVDTSFLQI-----VSESMASLRILSLSYSRLNKNTILD-QGLCELVHLQELYIR 116
            R+L         I     +     +L  L +SY     N I    G+ +LV+L+ LY+ 
Sbjct: 72  LRIL---SLGRNLIKKIENLDAVADTLEELWISY-----NQIASLSGIEKLVNLRVLYMS 123

Query: 117 DNDLRD-SLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLC 175
           +N + +   +  LA +  L+ L +A N L  ++                 ++ R  +   
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-----------NATSEYRIEV--- 169

Query: 176 LANLTSLRVLD 186
           +  L +L+ LD
Sbjct: 170 VKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 502 LDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP 561
           L      I     +  +L + + + LS N IE ++ S+      L  L L  N +   I 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISSL-SGMENLRILSLGRNLIK-KIE 86

Query: 562 NWIDKLPQLSYILLANNYI---EGEIPVQLCQLKEVRLIDLSHNNLS 605
           N       L  + ++ N I    G     + +L  +R++ +S+N ++
Sbjct: 87  NLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
           L    HL LS N     I SS + M+ L+ L +  N +     E +     +LE L +S 
Sbjct: 47  LKACKHLALSTNNI-EKI-SSLSGMENLRILSLGRNLIKKI--ENLDAVADTLEELWISY 102

Query: 411 N---TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE--SLSKCYLLGGLYLSDNHLSGKI 465
           N   +L G        L NL+ L +  NK I    E   L+    L  L L+ N L    
Sbjct: 103 NQIASLSG--IE---KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 466 P 466
            
Sbjct: 157 K 157

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 66.1 bits (161), Expect = 3e-11
 Identities = 71/479 (14%), Positives = 146/479 (30%), Gaps = 52/479 (10%)

Query: 2   HNFTNLEELIL---VESDLHVSQLLQSIASFSSLKYLSMRGCV------LKGALHGQDFH 52
           +N   L+ +     + SDL + +L ++      L+ L +  C       L   +      
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKA--RADDLETLKLDKCSGFTTDGLLSIVTH---- 162

Query: 53  EFKNLEHLVMDR-MLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVH-- 109
             + ++ L+M+     E D  +L  +++   SL +L+   +   K  I  + L  +    
Sbjct: 163 -CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK--ISPKDLETIARNC 219

Query: 110 --LQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNND 167
             L  + + D ++   L+       +L+     S       P  +  LV  R+L      
Sbjct: 220 RSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 168 LRG--SLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEP 225
             G   +P+       +R LD+ Y  L      + +    ++E L   N        LE 
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD--RGLEV 336

Query: 226 LF-NLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFL-YHQHDLNNA 283
           L     +LK                   +  ++   L     G    +++  +  D+ N 
Sbjct: 337 LAQYCKQLKRLR---IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393

Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFG------SFRMPIHCLQKLATLDVSNN 337
            L  +           +N  D + +LL               R  +   +KL        
Sbjct: 394 SLESIGTYL-------KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

Query: 338 -FFLGHIPVE-IGTYLPGLMHLNLSRNAF-NGSIPSSFADMKMLKSLDISYNQLTGAIPE 394
              L  + +  IG Y P +  + L      +  +         L+ L++     +     
Sbjct: 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506

Query: 395 RMAMGCFSLEILALSNNTLQ---GHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL 450
                  SL  L +           +        N++ +       + +  E     + 
Sbjct: 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHP 565

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 72/550 (13%), Positives = 148/550 (26%), Gaps = 112/550 (20%)

Query: 29  FSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILS 88
           F +L+ L ++G           F+         +          ++  +S ++  L+ + 
Sbjct: 72  FPNLRSLKLKGK-----PRAAMFNLIPENWGGYVT--------PWVTEISNNLRQLKSVH 118

Query: 89  LSYSRLNKNTILDQGLCELVHLQELYIRD-NDLRDSLLWCLA-NMTSLQVLNVASNQLTG 146
                ++   +          L+ L +   +      L  +  +   ++ L +  +  + 
Sbjct: 119 FRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE 178

Query: 147 NFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHL-- 204
                  EL                      + TSL VL+    +    IS   L  +  
Sbjct: 179 KDGKWLHEL--------------------AQHNTSLEVLNFYMTEFA-KISPKDLETIAR 217

Query: 205 --TSIEELILSNNHFQIPISLEPLF-NLSKLKTFNGEIYAETESHYNSLTPKFQLTSISL 261
              S+  + + +      +       NL +    +          Y +L    +L  + L
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277

Query: 262 SGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRM 321
           S  G     P        +   DL +  L  E    L +   +L+ L   N        +
Sbjct: 278 SYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV 336

Query: 322 PIHCLQKLATLDVSNNFFLGHIPVE----------------------------------- 346
                ++L  L +        +  E                                   
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396

Query: 347 -IGTYLPGLMHLNLSRNAFNGSIPSSFAD---------MKMLKSLDISYN--QLTGAIPE 394
            IGTYL  L    L        I     D          K L+          LT     
Sbjct: 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456

Query: 395 RMAMGCFSLEILALSN--NTLQG--HIFSEKFNLTNLKRLQLDGNKFIGE-IPESLSKCY 449
            +     ++  + L     + +G            NL++L++ G  F    I  +++K  
Sbjct: 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSR---GCPNLQKLEMRGCCFSERAIAAAVTKLP 513

Query: 450 LLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI 509
            L  L++     S         L+ +     P  N+E         +   +V +++    
Sbjct: 514 SLRYLWVQGYRASMT----GQDLMQMA---RPYWNIE--------LIPSRRVPEVNQQGE 558

Query: 510 FGTLPSCLSL 519
              +     +
Sbjct: 559 IREMEHPAHI 568

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 18/188 (9%)

Query: 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF--NLTNLKRLQLDGNK 436
             L  S  QL   +P+ +        +L LS+N L   + +E     LTNL  L L  N 
Sbjct: 21  NILSCSKQQLP-NVPQSLPS---YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH 75

Query: 437 FIGEIPE-SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNE-FC 494
            +  I   +      L  L LS NHL          L AL+ +++ NN++   +    F 
Sbjct: 76  -LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFE 133

Query: 495 QLDCLKVLDLSNNSI----FGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLD 550
            +  L+ L LS N I       +     L  +  + LS NK++    + +   P  V   
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 551 LSYNRLHG 558
           L    LH 
Sbjct: 194 L---YLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 132 TSLQVLNVASNQLTGNFPPG--FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSY 189
           +   +L+++ N L+           L  L  L + +N L          + +LR LD+S 
Sbjct: 39  SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 190 NQLTENISSSPLMHLTSIEELILSNNHFQIPISLEP-LF-NLSKLKT 234
           N L   +       L ++E L+L NNH      ++   F ++++L+ 
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQK 140

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           + ++  +DLS N L   +   +   L  +  L L +N++       F ++ Q++ L LS 
Sbjct: 87  VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 728 NLLHGKIPPQLIV----LNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYE--GNPFLC 780
           N +  + P +LI     L  L +  ++ N L       + +   + ++      NP  C
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 17/121 (14%)

Query: 499 LKVLDLSNNSIFGTLPSCLS---LGSIEQVHLSKNKIEGQLESIIHYY-----PYLVTLD 550
             +LDLS+N++   L +  +   L ++  + LS N +     + I        P L  LD
Sbjct: 41  TALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL-----NFISSEAFVPVPNLRYLD 94

Query: 551 LSYNRLHGSIPNWI-DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609
           LS N LH ++  ++   L  L  +LL NN+I          + +++ + LS N +S   P
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

Query: 610 P 610
            
Sbjct: 153 V 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 13/146 (8%)

Query: 27  ASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDR-MLVEVDTSFLQIVSESMASLR 85
              ++L  L +    L   +  + F    NL +L +    L  +D          + +L 
Sbjct: 61  TRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS----DLQALE 115

Query: 86  ILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLR---DSLLWCLANMTSLQVLNVASN 142
           +L L  + +    +      ++  LQ+LY+  N +      L+     +  L +L+++SN
Sbjct: 116 VLLLYNNHIV--VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173

Query: 143 QLTGNFPPGFCELVLLRE--LYIDNN 166
           +L         +L    +  LY+ NN
Sbjct: 174 KLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 40/198 (20%), Positives = 67/198 (33%), Gaps = 46/198 (23%)

Query: 180 TSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEP--LFNLSKLKTFNG 237
           +   +LD+S+N L+   +      LT++  L+LS+NH      +       +  L+  + 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLD- 94

Query: 238 EIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNW 297
                     N       L ++      D   F        DL    L  L L       
Sbjct: 95  -------LSSN------HLHTL------DEFLF-------SDLQA--LEVLLLYNNHIVV 126

Query: 298 LPE----NNTDLKTLLLANNSL----FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGT 349
           +      +   L+ L L+ N +        +     L KL  LD+S+N  L  +P+    
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK-LPKLMLLDLSSN-KLKKLPLTDLQ 184

Query: 350 YLPGLMH--LNLSRNAFN 365
            LP  +   L L  N   
Sbjct: 185 KLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 8/99 (8%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQI--GYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLD 724
           + +  + +DLS N L+  +  +     LT + +L LSHN+L   I +  F  +  +  LD
Sbjct: 37  LPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94

Query: 725 LSYNLLHGKIPPQLIV-LNTLAVFRVAYNNLSGKIPDRV 762
           LS N LH  +   L   L  L V  +  N++   +    
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNA 131

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 18/155 (11%)

Query: 93  RLNKNTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLT--GNFP 149
           +L    I         V  +EL +R   +   +    A +     ++ + N++     FP
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDGFP 61

Query: 150 PGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEE 209
                L  L+ L ++NN +          L  L  L ++ N L E     PL  L S+  
Sbjct: 62  L----LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117

Query: 210 LILSNNHFQIPISLEP------LFNLSKLKTFNGE 238
           L +  N    P++ +       ++ + +++  + +
Sbjct: 118 LCILRN----PVTNKKHYRLYVIYKVPQVRVLDFQ 148

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 501 VLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI 560
           ++ L+   I        +     ++ L   KI   +E++         +D S N +   +
Sbjct: 1   MVKLTAELI-EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 57

Query: 561 PNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
             +   L +L  +L+ NN I          L ++  + L++N+L 
Sbjct: 58  DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482
           N    + L L G K I  I    +       +  SDN +  K+      L  L+ +++ N
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSI--FGTLPSCLSLGSIEQVHLSKN---KIEGQLE 537
           N +          L  L  L L+NNS+   G L    SL S+  + + +N     +    
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 133

Query: 538 SIIHYYPYLVTLD 550
            +I+  P +  LD
Sbjct: 134 YVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 79  ESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLN 138
            +    R L L   ++     L      L     +   DN++R   L     +  L+ L 
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGA---TLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLL 70

Query: 139 VASNQLTGNFPPGFCELVLLRELYIDNNDLR--GSLPLCLANLTSLRVLDVSYNQLTE 194
           V +N++          L  L EL + NN L   G L   LA+L SL  L +  N +T 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 7/113 (6%)

Query: 281 NNADLSHLNLSG---EFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNN 337
           N      L+L G        L         +  ++N +          L++L TL V+NN
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKLD-GFPLLRRLKTLLVNNN 74

Query: 338 FFLGHIPVEIGTYLPGLMHLNLSRNAFNG-SIPSSFADMKMLKSLDISYNQLT 389
             +  I   +   LP L  L L+ N+          A +K L  L I  N +T
Sbjct: 75  -RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 51/375 (13%), Positives = 102/375 (27%), Gaps = 91/375 (24%)

Query: 109 HLQELYIRDNDLRDSLLWCLA-----NMTSLQVLNVASNQLTGNFPPGFCELVL-----L 158
            +  L +  N+L       L         S+  LN++ N L         +++      +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 159 RELYIDNNDL--RGSLPLCLA---NLTSLRVLDVSYNQLTEN----ISSSPLMHLTSIEE 209
             L +  N L  + S  L         ++ VLD+ +N  +         +      SI  
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 210 LILSNNHFQIPISLEPLFNLSK-LKTFNGEIYAETESHYNSLTPKFQLTSISLS--GYGD 266
           L L  N     + ++    L + L                       + S++L       
Sbjct: 143 LNLRGND----LGIKSSDELIQILAAIPA-----------------NVNSLNLRGNNLAS 181

Query: 267 GGTFPKFLYHQHDLNNADLSHLNLSG---------EFPNWLPENNTDLKTLLLANNSLFG 317
                  L        A ++ L+LS          E           + +L L  N L G
Sbjct: 182 KNC--AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239

Query: 318 SFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG-------SIPS 370
                   L+ L  L  S                  L  + L  +           ++ +
Sbjct: 240 P------SLENLKLLKDSL---------------KHLQTVYLDYDIVKNMSKEQCKALGA 278

Query: 371 SFADMKMLKSLDISYNQLTG----AIPERMAMGCFSLEILALSNNTL-----QGHIFSEK 421
           +F +++ +  +D +  ++       I   +       ++ +L N  L           + 
Sbjct: 279 AFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDL 338

Query: 422 FNLTNLKRLQLDGNK 436
                L+        
Sbjct: 339 NIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 55/297 (18%), Positives = 92/297 (30%), Gaps = 64/297 (21%)

Query: 352 PGLMHLNLSRNAFNGSIPSSFADM-----KMLKSLDISYNQLT----GAIPERMAMGCFS 402
            G+  L+LS N                    + SL++S N L       + + +A    +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 403 LEILALSNNTLQ---GHIFSE--KFNLTNLKRLQLDGNKF----IGEIPESLSKCYL-LG 452
           +  L LS N L         +        +  L L  N F      E  ++ S     + 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 453 GLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT 512
            L L  N L  K    L  +LA         N+                L+L  N++   
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAA-----IPANV--------------NSLNLRGNNL--A 180

Query: 513 LPSCLSLG--------SIEQVHLSKNKIEGQ-----LESIIHYYPYLVTLDLSYNRLHGS 559
             +C  L         S+  + LS N +  +              ++V+L+L  N LHG 
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 560 ----IPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEV-------RLIDLSHNNLS 605
               +    D L  L  + L  + ++     Q   L           L+D +   + 
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 49/357 (13%), Positives = 90/357 (25%), Gaps = 101/357 (28%)

Query: 176 LANLTSLRVLDVSYNQLTEN----ISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSK 231
            +    +  LD+S N L       +  +      S+  L LS N     +  +    L +
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS----LGFKNSDELVQ 73

Query: 232 -LKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNL 290
            L                       +TS++LSG              + L+      L  
Sbjct: 74  ILAAIPA-----------------NVTSLNLSG--------------NFLSYKSSDELVK 102

Query: 291 SGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTY 350
           +      L      +  L L  N              +      +               
Sbjct: 103 T------LAAIPFTITVLDLGWNDFSSK------SSSEFKQAFSNLP------------- 137

Query: 351 LPGLMHLNLSRNAFNGSIPSSFADM-----KMLKSLDISYNQLT----GAIPERMAMGCF 401
              +  LNL  N            +       + SL++  N L       + + +A    
Sbjct: 138 -ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 402 SLEILALSNNTLQ---GHIFSE--KFNLTNLKRLQLDGNKF----IGEIPESLSKCYLLG 452
           S+  L LS N L        +        ++  L L  N      +  +         L 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 453 GLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI 509
            +YL  + +         +L A                  F  +  + ++D +   I
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAA-----------------FPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 83  SLRILSLSYSRLNKNTILDQGLCELV--------HLQELYIRDNDLRDSLLWCLA----- 129
           ++  L+L       N +  +   EL          +  L +  N L       LA     
Sbjct: 168 NVNSLNLRG-----NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 130 NMTSLQVLNVASNQLTGNFPPGFCELVL----LRELYIDNNDLRG-------SLPLCLAN 178
               +  LN+  N L G        L      L+ +Y+D + ++        +L     N
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282

Query: 179 LTSLRVLDVSYNQL 192
           +  + ++D +  ++
Sbjct: 283 IQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 49/286 (17%), Positives = 92/286 (32%), Gaps = 57/286 (19%)

Query: 355 MHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG----AIPERMAMGCFSLEILALSN 410
           M+  L+ +  +  +    +    + SLD+S N L       + +  A    S+  L LS 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 411 NTLQ---GHIFSE--KFNLTNLKRLQLDGNKF----IGEIPESLSKCYL-LGGLYLSDNH 460
           N+L         +       N+  L L GN        E+ ++L+     +  L L  N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 461 LSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLG 520
            S K         +       N                +  L+L  N +   + S   L 
Sbjct: 121 FSSKSSSEFKQAFS-------NLPA------------SITSLNLRGNDL--GIKSSDELI 159

Query: 521 --------SIEQVHLSKNKIEGQ-----LESIIHYYPYLVTLDLSYNRL-HGSIPNWIDK 566
                   ++  ++L  N +  +      + +      + +LDLS N L   S       
Sbjct: 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219

Query: 567 L----PQLSYILLANNYIEGEIPVQLCQLKEV----RLIDLSHNNL 604
                  +  + L  N + G     L  LK+     + + L ++ +
Sbjct: 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN---TL 413
           + L +N      P +F+  K L+ +D+S NQ++  +      G  SL  L L  N    L
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 414 QGHIFSEKFNLTNLKRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGKIPRWL 469
              +F     L +L+ L L+ NK I  +       L     L  L L DN L        
Sbjct: 96  PKSLFE---GLFSLQLLLLNANK-INCLRVDAFQDLHN---LNLLSLYDNKLQTIAKGTF 148

Query: 470 GSLLALQDIIMPNN 483
             L A+Q + +  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
           + L  N +    P        L+ I + NN +    P+ F  L  L  L L  N I   L
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TEL 95

Query: 514 PSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQL 570
           P  L   L S++ + L+ NKI             L  L L  N+L  +I       L  +
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAI 154

Query: 571 SYILLANN 578
             + LA N
Sbjct: 155 QTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 132 TSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSY 189
            ++  + +  N +    PPG F     LR + + NN +   L       L SL  L +  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 190 NQLTENISSSPLMHLTSIEELILSNNHFQIPISLEP-LF-NLSKLKT 234
           N++TE +  S    L S++ L+L+ N       L    F +L  L  
Sbjct: 90  NKITE-LPKSLFEGLFSLQLLLLNANKIN---CLRVDAFQDLHNLNL 132

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 80  SMASLRILSLSYSRLNKNTILDQGLCE-LVHLQELYIRDNDLRDSLLW-CLANMTSLQVL 137
               LR + LS    N+ + L     + L  L  L +  N +   L       + SLQ+L
Sbjct: 54  PYKKLRRIDLSN---NQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLL 109

Query: 138 NVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTEN 195
            + +N++        F +L  L  L + +N L+       + L +++ +      L +N
Sbjct: 110 LLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM-----HLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           L S++ + L  NK+T E+P  +   L  ++ L L+ N +       F +L  +  L L  
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 728 NLLH 731
           N L 
Sbjct: 138 NKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 31/157 (19%)

Query: 159 RELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ 218
            E+ ++ N ++   P   +    LR +D+S NQ++E ++      L S+  L+L  N   
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT 93

Query: 219 IPISLEP-LF-NLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYH 276
               L   LF  L  L+            + N      ++  +          F      
Sbjct: 94  ---ELPKSLFEGLFSLQLLL--------LNAN------KINCL------RVDAFQD---- 126

Query: 277 QHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANN 313
            H+LN   L    L              ++T+ LA N
Sbjct: 127 LHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 54/324 (16%), Positives = 92/324 (28%), Gaps = 86/324 (26%)

Query: 281 NNADLSHLNLSGEFPNWLP-----------ENNTDLKTLLLANNSLFGSFRMPIHCLQKL 329
            +  +  + LSG   N +             +  DL+    ++             L+ L
Sbjct: 30  EDDSVKEIVLSG---NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86

Query: 330 ATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADM----KMLKSLDISY 385
               +                 P L  + LS NAF  +      D       L+ L +  
Sbjct: 87  LQALLKC---------------PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 131

Query: 386 NQ------------LTGAIPERMAMGCFSLEILALSNNTLQ---GHIFSEKF-NLTNLKR 429
           N             L      + A     L  +    N L+      +++ F +   L  
Sbjct: 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191

Query: 430 LQLDGNKFIGE-----IPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNN 484
           +++  N    E     + E L+ C  L  L L DN  +      L   L           
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK---------- 241

Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSI-------FGTLPSCLSLGSIEQVHLSKNKIEGQ-- 535
                         L+ L L++  +            S L    ++ + L  N+IE    
Sbjct: 242 ----------SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291

Query: 536 ---LESIIHYYPYLVTLDLSYNRL 556
                 I    P L+ L+L+ NR 
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 43/285 (15%), Positives = 91/285 (31%), Gaps = 60/285 (21%)

Query: 378 LKSLDISYNQLTGAIPERMA---MGCFSLEILALSNNTL--QG--HIFSEKFNLTNLKRL 430
           ++   +  + +T    + +    +   S++ + LS NT+  +    +     +  +L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 431 QLDGNKFIGEIP-----------ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA----L 475
           +     F G +            ++L KC  L  + LSDN         L   L+    L
Sbjct: 66  EFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 476 QDIIMPNNNL-------------EGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLG-- 520
           + + + NN L             E  +  +      L+ +    N +     S       
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL--ENGSMKEWAKT 182

Query: 521 -----SIEQVHLSKNKI-----EGQLESIIHYYPYLVTLDLSYNRLHG----SIPNWIDK 566
                 +  V + +N I     E  L   + Y   L  LDL  N        ++   +  
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 567 LPQLSYILLANNYIEGEIPVQLCQ-LKEV-----RLIDLSHNNLS 605
            P L  + L +  +       +     ++     + + L +N + 
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 62/352 (17%), Positives = 111/352 (31%), Gaps = 77/352 (21%)

Query: 176 LANLTSLRVLDVSYNQLTEN---ISSSPLMHLTSIEELILSNNHF------------QIP 220
           +A   S+    +  + +T        + L+   S++E++LS N                 
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 221 ISLEPLFNLSKLKT--FNGEIYAETESHYNSLTPKFQLTSISLSG--YGDGG--TFPKFL 274
             LE     S + T     EI         +L    +L ++ LS   +G         FL
Sbjct: 60  KDLEIA-EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 275 YHQHDLNNADLSHLNLSG-----------------EFPNWLPENNTDLKTLLLANNSLFG 317
                  +  L HL L                      N   +N   L++++   N L  
Sbjct: 119 -----SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-E 172

Query: 318 SFRMP-----IHCLQKLATLDVSNNFFLGH--IPVEIGTYL---PGLMHLNLSRNAFNG- 366
           +  M          + L T+ +  N  +    I   +   L     L  L+L  N F   
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 367 ---SIPSSFADMKMLKSLDISYNQLTG----AIPERMAMGCF-SLEILALSNNTLQ---G 415
              ++  +      L+ L ++   L+     A+ +  +      L+ L L  N ++    
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291

Query: 416 HIFSE--KFNLTNLKRLQLDGNKF------IGEIPESLSKCYLLGGLYLSDN 459
                     + +L  L+L+GN+F      + EI E  S         L D 
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 50/341 (14%), Positives = 98/341 (28%), Gaps = 89/341 (26%)

Query: 83  SLRILSLSYSRLNKN--TILDQGLCELVHLQELYIRDNDLRD----SLLWCLANMTSLQV 136
           S+   SL    +       +   L E   ++E+ +  N +       L   +A+   L++
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 137 LNVASNQ---LTGNFPPGFCELVL-------LRELYIDNNDL--RGSLPLC--LANLTSL 182
              +      +    P     L+        L  + + +N        PL   L+  T L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 183 RVLDVSYNQ------------LTENISSSPLMHLTSIEELILSNNHFQ----IPISLEPL 226
             L +  N             L E   +    +   +  +I   N  +       + +  
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA-KTF 183

Query: 227 FNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLS 286
            +   L T             N + P+           G      + L +       +L 
Sbjct: 184 QSHRLLHTVK--------MVQNGIRPE-----------GIEHLLLEGLAY-----CQELK 219

Query: 287 HLNLSGEFPNWLPE-----------NNTDLKTLLLANN--------SLFGSFRMPIHCLQ 327
            L+L     N               +  +L+ L L +         ++  +F    +   
Sbjct: 220 VLDLQD---NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI-- 274

Query: 328 KLATLDVSNNFF----LGHIPVEIGTYLPGLMHLNLSRNAF 364
            L TL +  N      +  +   I   +P L+ L L+ N F
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 25/173 (14%), Positives = 48/173 (27%), Gaps = 39/173 (22%)

Query: 79  ESMASLRILSLSYSRLNKNTILDQGLCEL----------------VHLQELYIRDNDLRD 122
                L  L L       N +  Q   ++                  L+ +    N L +
Sbjct: 119 SKHTPLEHLYLHN-----NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173

Query: 123 ----SLLWCLANMTSLQVLNVASNQLT-----GNFPPGFCELVLLRELYIDNNDL--RGS 171
                      +   L  + +  N +           G      L+ L + +N     GS
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 172 LPLC--LANLTSLRVLDVSYNQLT----ENISSS-PLMHLTSIEELILSNNHF 217
             L   L +  +LR L ++   L+      +  +   +    ++ L L  N  
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 390
            L ++NN F       I   LP L  +N S N        +F     +  + ++ N+L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 391 AIPERMAMGCFSLEILALSNNTLQ---GHIFSEKFNLTNLKRLQLDGNKFIGEIPE---- 443
            +  +M  G  SL+ L L +N +       F     L++++ L L  N+ I  +      
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQ-ITTVAPGAFD 150

Query: 444 SLSKCYLLGGLYLSDN 459
           +L     L  L L  N
Sbjct: 151 TLHS---LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 132 TSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYN 190
                L + +N+ T     G F +L  LR++   NN +           + +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 191 QLTENISSSPLMHLTSIEELILSNNHFQIPISLEP-LF-NLSKLKT 234
           +L  N+       L S++ L+L +N       +    F  LS ++ 
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT---CVGNDSFIGLSSVRL 133

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 454 LYLSDNHLSGKIPR-WLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT 512
           L L++N  +          L  L+ I   NN +       F     +  + L++N +   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL-EN 95

Query: 513 LPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQ 569
           +   +   L S++ + L  N+I             +  L L  N++  ++     D L  
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHS 154

Query: 570 LSYILLANN 578
           LS + L  N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 83  SLRILSLSYSRLNKNTILDQG-LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVAS 141
            LR ++ S    NK T +++G       + E+ +  N L +        + SL+ L + S
Sbjct: 58  QLRKINFSN---NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114

Query: 142 NQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTEN 195
           N++T       F  L  +R L + +N +    P     L SL  L      L  N
Sbjct: 115 NRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL-----NLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 10/134 (7%)

Query: 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFN-LTNLKRLQLDGNKF 437
             L ++ N+ T      +      L  +  SNN +   I    F   + +  + L  N+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR- 92

Query: 438 IGEIPE----SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEF 493
           +  +       L     L  L L  N ++         L +++ + + +N +    P  F
Sbjct: 93  LENVQHKMFKGLES---LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 494 CQLDCLKVLDLSNN 507
             L  L  L+L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 500 KVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
             L L+NN       + +   L  + +++ S NKI    E        +  + L+ NRL 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 558 GSIPNWI-DKLPQLSYILLANNYIEGEIPVQL-CQLKEVRLIDLSHNNLSGHIPP 610
            ++ + +   L  L  ++L +N I   +       L  VRL+ L  N ++  + P
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 21/161 (13%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ-- 414
           L+L          ++F  +  L  L++ YNQL   +   +      L  L L+NN L   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98

Query: 415 -GHIFSEKFNLTNLKRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGKIPRWL 469
              +F    +LT L +L L GN+ +  +P      L+K   L  L L+ N L   IP   
Sbjct: 99  PLGVFD---HLTQLDKLYLGGNQ-LKSLPSGVFDRLTK---LKELRLNTNQLQ-SIPA-- 148

Query: 470 G---SLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNN 507
           G    L  LQ + +  N L+      F +L  L+ + L  N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 48/187 (25%), Positives = 67/187 (35%), Gaps = 38/187 (20%)

Query: 303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRN 362
            D + L L +  L          L KL  L++  N  L  +   +   L  L  L L+ N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN 93

Query: 363 AFNGSIPSS-FADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK 421
               S+P   F  +  L  L +  NQL  ++P     G F                    
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPS----GVFD------------------- 128

Query: 422 FNLTNLKRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGKIPR-WLGSLLALQ 476
             LT LK L+L+ N+ +  IP      L+    L  L LS N L   +P      L  LQ
Sbjct: 129 -RLTKLKELRLNTNQ-LQSIPAGAFDKLTN---LQTLSLSTNQLQS-VPHGAFDRLGKLQ 182

Query: 477 DIIMPNN 483
            I +  N
Sbjct: 183 TITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSYN 190
              + L++ S  L       F  L  L  L +D N L+ +L      +LT L  L ++ N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN 93

Query: 191 QLTENISSSPLMHLTSIEELILSNNHFQIPISLEP-LF-NLSKLKT 234
           QL  ++      HLT +++L L  N  +   SL   +F  L+KLK 
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLK---SLPSGVFDRLTKLKE 135

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 6/153 (3%)

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
           L L    L+         L  L  + +  N L+      F  L  L  L L+NN +  +L
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98

Query: 514 PSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQL 570
           P  +   L  +++++L  N+++     +      L  L L+ N+L  SIP    DKL  L
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNL 157

Query: 571 SYILLANNYIEGEIPVQLCQLKEVRLIDLSHNN 603
             + L+ N ++        +L +++ I L   N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNN 484
            + ++L L           +      L  L L  N L          L  L  + + NN 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIH- 541
           L       F  L  L  L L  N +  +LPS +   L  ++++ L+ N    QL+SI   
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTN----QLQSIPAG 149

Query: 542 ---YYPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANN 578
                  L TL LS N+L  S+P+   D+L +L  I L  N
Sbjct: 150 AFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 111 QELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLR 169
            ELY+  N     +   L+N   L ++++++N+++       F  +  L  L +  N LR
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 170 GSLPL-CLANLTSLRVLDVSYNQLTENISSSP---LMHLTSIEELILSNN 215
             +P      L SLR+L +  N +    S  P      L+++  L +  N
Sbjct: 92  -CIPPRTFDGLKSLRLLSLHGNDI----SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 32/124 (25%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS----LEILALSNNT 412
           L L  N F   +P   ++ K L  +D+S N+++  +        FS    L  L LS N 
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSN----QSFSNMTQLLTLILSYNR 89

Query: 413 LQ---GHIFSEKFNLTNLKRLQLDGNKFIGEIPE-------SLSKCYLLGG--------L 454
           L+      F     L +L+ L L GN  I  +PE       +LS   +            
Sbjct: 90  LRCIPPRTFD---GLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145

Query: 455 YLSD 458
           +LSD
Sbjct: 146 WLSD 149

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 82  ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVAS 141
             +  L L     N+ T++ + L    HL  + + +N +        +NMT L  L ++ 
Sbjct: 31  RDVTELYLDG---NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87

Query: 142 NQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPL-CLANLTSL 182
           N+L    PP  F  L  LR L +  ND+   +P     +L++L
Sbjct: 88  NRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSAL 128

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 665 RGRILTSM-SGI-------DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSN 716
             + L  +  GI        L  N+ T  +P ++     +  ++LS+N ++     +FSN
Sbjct: 18  SNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76

Query: 717 LKQIESLDLSYNLL 730
           + Q+ +L LSYN L
Sbjct: 77  MTQLLTLILSYNRL 90

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 159 RELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ 218
            ELY+D N     +P  L+N   L ++D+S N+++  +S+    ++T +  LILS N  +
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRLR 91

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 21/108 (19%)

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESI 539
           + N    +P E      L ++DLSNN I  TL +    ++  +  + LS N    +L  I
Sbjct: 39  DGNQFTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYN----RLRCI 93

Query: 540 IHYYPY--------LVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANN 578
               P         L  L L  N +   +P    + L  LS++ +  N
Sbjct: 94  ----PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 128 LANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLD 186
           L    +L  L + + Q   +        L  LR L I  + LR   P        L  L+
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 187 VSYNQLTENISSSPLMHLTSIEELILSNNHFQ 218
           +S+N L   +S   +  L S++EL+LS N   
Sbjct: 87  LSFNALES-LSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 141 SNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSYNQLTENISSS 199
           +     +          L ELYI+N      L L  L  L  LR L +  + L   ++  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 200 PLMHLTSIEELILSNNHFQIPISLEPLFNLS 230
                  +  L LS N  +  +S + +  LS
Sbjct: 75  AFHFTPRLSRLNLSFNALES-LSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 5/108 (4%)

Query: 676 DLSC-NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGK 733
            L C      +    +     +  L + +      +       L ++ +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-F 70

Query: 734 IPPQ-LIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 780
           + P        L+   +++N L   +  +  Q  + +E    GNP  C
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 4e-06
 Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 7/98 (7%)

Query: 367 SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN---TLQGHIFSEKFN 423
                    + L  L I   Q    +  R   G   L  L +  +    +    F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 461
              L RL L  N  +  +     +   L  L LS N L
Sbjct: 79  TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

Query: 489 IPNEFCQLDCLKVLDLSNNSIFGTLPSC--LSLGSIEQVHLSKNKIEGQLESIIHYYPYL 546
             +     + L  L + N      L       LG +  + + K+ +        H+ P L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606
             L+LS+N L       +  L  L  ++L+ N +        C L+ ++  +        
Sbjct: 83  SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL-----HCSCALRWLQRWEEEGLGGVP 136

Query: 607 HIPPC 611
                
Sbjct: 137 EQKLQ 141

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 669 LTSMSGIDLSCNKLTGEIPTQ-IGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
             +++ + +   +    +  + +  L  +R L +  + L    P  F    ++  L+LS+
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 728 NLLHGKIPPQLIVLNTLAVFRVAYNNL 754
           N L   +  + +   +L    ++ N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 23/108 (21%)

Query: 423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482
              NL  L ++  + +  +                         R L  L  L+++ +  
Sbjct: 29  GAENLTELYIENQQHLQHLE-----------------------LRDLRGLGELRNLTIVK 65

Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKN 530
           + L    P+ F     L  L+LS N++       +   S++++ LS N
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 423 NLTNLKRLQLDGNKF-IGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMP 481
             +++K L LD ++   G++     +   L  L   +  L+  I   L  L  L+ + + 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSI--FGTLPSCLSLGSIEQVHLSKN---KIEGQL 536
           +N + G +     +   L  L+LS N I    T+     L +++ + L       +    
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132

Query: 537 ESIIHYYPYLVTLD 550
           E++    P L  LD
Sbjct: 133 ENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 109 HLQELYIRDNDLRD-SLLWCLANMTSLQVLNVASNQLT--GNFPPGFCELVLLRELYIDN 165
            ++EL + ++   +  L         L+ L+  +  LT   N P    +L  L++L + +
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSD 73

Query: 166 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNN 215
           N + G L +      +L  L++S N++ +  +  PL  L +++ L L N 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH 541
           + + EG +     + + L+ L   N  +                      I       + 
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGL--------------------TSIAN-----LP 61

Query: 542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEG-EIPVQLCQLKEVRLIDLS 600
               L  L+LS NR+ G +    +K P L+++ L+ N I+       L +L+ ++ +DL 
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

Query: 601 HN 602
           + 
Sbjct: 122 NC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 518 SLGSIEQVHLSKNKI-EGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA 576
           +   ++++ L  ++  EG+LE +   +  L  L      L  SI N + KL +L  + L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 577 NNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
           +N + G + V   +   +  ++LS N + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 33/144 (22%)

Query: 3   NFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVM 62
             ++++EL+L  S  +  +L      F  L++LS     L             ++ +L  
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL------------TSIANL-- 60

Query: 63  DRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRD 122
                             +  L+ L LS +R++    L+    +  +L  L +  N ++D
Sbjct: 61  ----------------PKLNKLKKLELSDNRVSG--GLEVLAEKCPNLTHLNLSGNKIKD 102

Query: 123 -SLLWCLANMTSLQVLNVASNQLT 145
            S +  L  + +L+ L++ + ++T
Sbjct: 103 LSTIEPLKKLENLKSLDLFNCEVT 126

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 27/149 (18%)

Query: 80  SMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLR-----DSLLWCLANMTSL 134
            + S+  +  + S +     +      L +++ L +  N L        L       T+L
Sbjct: 39  ELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLHDISALKEL-------TNL 87

Query: 135 QVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSYNQL 192
             L +  NQL  + P G F +L  L+EL +  N L+ SLP      LT+L  L++++NQL
Sbjct: 88  TYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQL 145

Query: 193 TENISSSPLM---HLTSIEELILSNNHFQ 218
                S P      LT++ EL LS N  Q
Sbjct: 146 Q----SLPKGVFDKLTNLTELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 34/214 (15%)

Query: 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFN-LTNLKRLQLDGNKF 437
              ++    +T A+ +       S++ +  +N+ ++     +    L N++ L L GNK 
Sbjct: 22  IKANLKKKSVTDAVTQN---ELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNK- 74

Query: 438 IGEIP--ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQ 495
           + +I   + L+    L  L L+ N L          L  L+++++  N L+      F +
Sbjct: 75  LHDISALKELTN---LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131

Query: 496 LDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPY-------- 545
           L  L  L+L++N +  +LP  +   L ++ ++ LS N    QL+S+    P         
Sbjct: 132 LTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYN----QLQSL----PEGVFDKLTQ 182

Query: 546 LVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANN 578
           L  L L  N+L  S+P+ + D+L  L YI L +N
Sbjct: 183 LKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 44/211 (20%)

Query: 23  LQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVS---- 78
           +    + + L  +             Q      N+ +L +            ++      
Sbjct: 31  VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN---------KLHDISAL 81

Query: 79  ESMASLRILSLSYSRLNK--NTILDQGLCELVHLQELYIRDNDLR-------DSLLWCLA 129
           + + +L  L L+ ++L    N + D+    L +L+EL + +N L+       D L     
Sbjct: 82  KELTNLTYLILTGNQLQSLPNGVFDK----LTNLKELVLVENQLQSLPDGVFDKL----- 132

Query: 130 NMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDV 187
             T+L  LN+A NQL  + P G F +L  L EL +  N L+ SLP      LT L+ L +
Sbjct: 133 --TNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRL 188

Query: 188 SYNQLTENISSSP---LMHLTSIEELILSNN 215
             NQL     S P      LTS++ + L +N
Sbjct: 189 YQNQLK----SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 32/215 (14%)

Query: 283 ADLSHLNLSGEFPNWLPENN--TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFL 340
           A+    NL  +        N    +  ++  N+ +       I  L  +  L +  N  L
Sbjct: 19  AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNK-L 75

Query: 341 GHIPVEIGTYLPGLMHLNLSRNAFNGSIPSS-FADMKMLKSLDISYNQLTGAIPERMAMG 399
             I       L  L +L L+ N    S+P+  F  +  LK L +  NQL  ++P+ +   
Sbjct: 76  HDISALKE--LTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDK 131

Query: 400 CFSLEILALSNNTLQ----GHIFSEKFNLTNLKRLQLDGNKFIGEIPE----SLSKCYLL 451
             +L  L L++N LQ    G +F     LTNL  L L  N+    +PE     L++   L
Sbjct: 132 LTNLTYLNLAHNQLQSLPKG-VFD---KLTNLTELDLSYNQL-QSLPEGVFDKLTQ---L 183

Query: 452 GGLYLSDNHLSGKIPRWLG---SLLALQDIIMPNN 483
             L L  N L   +P   G    L +LQ I + +N
Sbjct: 184 KDLRLYQNQLKS-VPD--GVFDRLTSLQYIWLHDN 215

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 82  ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVAS 141
            S     +   R     + ++    +  L     + ND +   L   A   +L+ L++ +
Sbjct: 1   GSSGSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLIN 58

Query: 142 NQLT--GNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSS 199
             L    N P     L  L++L +  N + G L +    L +L  L++S N+L +  +  
Sbjct: 59  VGLISVSNLPK----LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114

Query: 200 PLMHLTSIEELILSNN 215
           PL  L  ++ L L N 
Sbjct: 115 PLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 8/134 (5%)

Query: 423 NLTNLKRLQLDGNKF-IGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMP 481
               ++ L LD  K   G+I    ++   L  L L +  L   +   L  L  L+ + + 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSI--FGTLPSCLSLGSIEQVHLSKN---KIEGQL 536
            N + G +     +L  L  L+LS N +    TL     L  ++ + L       +    
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139

Query: 537 ESIIHYYPYLVTLD 550
           ES+    P L  LD
Sbjct: 140 ESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 492 EFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDL 551
               +  L VLD   ++            ++E + L    +   +   +   P L  L+L
Sbjct: 22  TPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLEL 78

Query: 552 SYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQ-LCQLKEVRLIDLSHN 602
           S NR+ G +    +KLP L+++ L+ N ++    ++ L +L+ ++ +DL + 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 517 LSLGSIEQVHLSKNKI-EGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL 575
            +  ++ ++ L   K  +G++E +   +  L  L L    L  S+ N + KLP+L  + L
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLEL 78

Query: 576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
           + N I G + +   +L  +  ++LS N L 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 33/144 (22%)

Query: 3   NFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVM 62
               + EL+L     +  ++    A F +L++LS+    L             NL  L  
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---------SVSNLPKLP- 71

Query: 63  DRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRD 122
                                L+ L LS +R+     LD    +L +L  L +  N L+D
Sbjct: 72  --------------------KLKKLELSENRIFG--GLDMLAEKLPNLTHLNLSGNKLKD 109

Query: 123 -SLLWCLANMTSLQVLNVASNQLT 145
            S L  L  +  L+ L++ + ++T
Sbjct: 110 ISTLEPLKKLECLKSLDLFNCEVT 133

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 37/135 (27%), Positives = 49/135 (36%), Gaps = 18/135 (13%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF----SLEILALSNNT 412
           L L  N      P  F  +  LK L +  NQL  A+P     G F     L +L L  N 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV----GVFDSLTQLTVLDLGTNQ 99

Query: 413 LQ----GHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRW 468
           L       +F     L +LK L +  NK   E+P  + +   L  L L  N L       
Sbjct: 100 LTVLPSA-VFD---RLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGA 154

Query: 469 LGSLLALQDIIMPNN 483
              L +L    +  N
Sbjct: 155 FDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 13/137 (9%)

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCL-ANLTSLRVLDVSYN 190
           T+ Q+L +  NQ+T   P  F  L+ L+ELY+ +N L  +LP+ +  +LT L VLD+  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98

Query: 191 QLTENISSSPLM---HLTSIEELILSNNHFQ-IPISLEPLFNLSKLKTFNGEIYAETESH 246
           QLT      P      L  ++EL +  N    +P  +E L +L+ L     ++ +     
Sbjct: 99  QLT----VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154

Query: 247 YNSLTPKFQLTSISLSG 263
           ++ L+    LT   L G
Sbjct: 155 FDRLS---SLTHAYLFG 168

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRN 362
           T+ + L L +N +          L  L  L + +N  LG +PV +   L  L  L+L  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98

Query: 363 AFNGSIPSS-FADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK 421
                +PS+ F  +  LK L +  N+LT  +P  +      L  LAL  N L+  I    
Sbjct: 99  QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLKS-IPHGA 154

Query: 422 F-NLTNLKRLQLDGN 435
           F  L++L    L GN
Sbjct: 155 FDRLSSLTHAYLFGN 169

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 46/190 (24%)

Query: 74  LQIVSESMASLRILSLSYSR------------------------LNKNTILDQGLCELV- 108
            +  +E ++SLR L+L+  R                        L    +   GL  L+ 
Sbjct: 64  QRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP 123

Query: 109 ---HLQELYIRDNDLRDSLLWCLA-----NMTSLQVLNVASNQLTGNFPPGFCELVL--- 157
                ++L ++ N L       L      +   +  L +++N LT        E +    
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183

Query: 158 -LRELYIDNNDLR--GSLPLC--LANLTSLRVLDVSYNQLTEN----ISSSPLMHLTSIE 208
            +  L + +  L   G   L   L     L+ L+V+YN   +     ++ +      S+E
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA-AREHPSLE 242

Query: 209 ELILSNNHFQ 218
            L L  N   
Sbjct: 243 LLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 31/170 (18%)

Query: 74  LQIVSESMASLRILSLSYSRLNKNTILDQG---LCEL-----VHLQELYIRDNDLRDS-- 123
           L+ +       R L L       N++  +    L +L       +  L + +N L  +  
Sbjct: 118 LRTLLPVFLRARKLGLQL-----NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV 172

Query: 124 --LLWCLANMTSLQVLNVASNQLTGNFPPGFCELVL----LRELYIDNNDL--RGSLPLC 175
             L+  LA  TS+  L++    L           +     L+EL +  N      +L L 
Sbjct: 173 AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232

Query: 176 --LANLTSLRVLDVSYNQLTEN------ISSSPLMHLTSIEELILSNNHF 217
                  SL +L + +N+L+                   +   +      
Sbjct: 233 RAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 27/163 (16%)

Query: 75  QIVSESMASLRILSLSYSRLNKNTILDQGLCELV--HLQELYIRDNDLRDSLLWCLA--- 129
           ++  + +    +L   +         +Q     V   L++L +    +       +A   
Sbjct: 40  KLGRQVLPPSELLDHLFFHYEFQ---NQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVL 96

Query: 130 --NMTSLQVLNVASNQLTGNFPPGFCEL--VL--LRELYIDNNDL--RGSLPLCLA---N 178
                +L  +N+AS QL    P G   L  V    R+L +  N L       L      +
Sbjct: 97  GSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153

Query: 179 LTSLRVLDVSYNQLTEN----ISSSPLMHLTSIEELILSNNHF 217
              +  L +S N LT      +    L   TS+  L L +   
Sbjct: 154 QCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHTGL 195

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 4   FTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMD 63
              ++ + L  S + VS L   ++  S L+ LS+ G  L   +      +  NL  L + 
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRLNL- 149

Query: 64  RMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELV-----HLQELYIRD- 117
                     LQ +  S + L  L+LS+         ++ +   V      + +L +   
Sbjct: 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFD----FTEKHVQVAVAHVSETITQLNLSGY 205

Query: 118 -NDLRDSLLWCLA-NMTSLQVLNVAS-NQLTGNFPPGFCELVLLRELYIDN-NDLRGSLP 173
             +L+ S L  L     +L  L+++    L  +    F +L  L+ L +    D+     
Sbjct: 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265

Query: 174 LCLANLTSLRVLDVSY 189
           L L  + +L+ L V  
Sbjct: 266 LELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 27  ASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRI 86
               S   ++ R           +      ++H+ +   ++  + S L  +    + L+ 
Sbjct: 65  GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI--EVSTLHGILSQCSKLQN 122

Query: 87  LSLSYSRLNKNTILDQGLCELVHLQELYIRD-NDLRDSLLWCLA-NMTSLQVLNVAS-NQ 143
           LSL   RL+   +    L +  +L  L +   +   +  L  L  + + L  LN++    
Sbjct: 123 LSLEGLRLSDPIVNT--LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180

Query: 144 LTGNFPPGFCELV-----LLRELYIDNNDLR---GSLPLCLANLTSLRVLDVSYNQLTEN 195
            T          V      + +L +           L   +    +L  LD+S + + +N
Sbjct: 181 FTEK---HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237

Query: 196 ISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
                   L  ++ L LS  +  IP +L  L  +  LKT  
Sbjct: 238 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 5/143 (3%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASF-SSLKYLSMRGCVLKGALHGQDF--HEFKNL 57
           L   +NL  L L          LQ++ S  S L  L++  C      H Q    H  + +
Sbjct: 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197

Query: 58  EHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRD 117
             L +      +  S L  +     +L  L LS S + KN    +   +L +LQ L +  
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSR 256

Query: 118 -NDLRDSLLWCLANMTSLQVLNV 139
             D+    L  L  + +L+ L V
Sbjct: 257 CYDIIPETLLELGEIPTLKTLQV 279

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 21/143 (14%)

Query: 82  ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLR-------DSLLWCLANMTSL 134
           A    L L  + L    + +    EL  L +LY+  N L+       + L       TSL
Sbjct: 28  AQTTYLDLETNSLKS--LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL-------TSL 78

Query: 135 QVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSYNQL 192
             LN+++NQL  + P G F +L  L+EL ++ N L+ SLP      LT L+ L +  NQL
Sbjct: 79  TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

Query: 193 TENISSSPLMHLTSIEELILSNN 215
            +++       LTS++ + L +N
Sbjct: 137 -KSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 14/139 (10%)

Query: 303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRN 362
                L L  NSL          L  L  L +  N  L  +P  +   L  L +LNLS N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86

Query: 363 AFNGSIPSS-FADMKMLKSLDISYNQLTGAIPERMAMGCF----SLEILALSNNTLQGHI 417
               S+P+  F  +  LK L ++ NQL  ++P+    G F     L+ L L  N L+  +
Sbjct: 87  QLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPD----GVFDKLTQLKDLRLYQNQLKS-V 139

Query: 418 FSEKF-NLTNLKRLQLDGN 435
               F  LT+L+ + L  N
Sbjct: 140 PDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 25/139 (17%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF----SLEILALSNNT 412
           L+L  N+        F ++  L  L +  N+L  ++P     G F    SL  L LS N 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPN----GVFNKLTSLTYLNLSTNQ 87

Query: 413 LQG---HIFSEKFNLTNLKRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGKI 465
           LQ     +F     LT LK L L+ N+ +  +P+     L++   L  L L  N L   +
Sbjct: 88  LQSLPNGVFD---KLTQLKELALNTNQ-LQSLPDGVFDKLTQ---LKDLRLYQNQLKS-V 139

Query: 466 PR-WLGSLLALQDIIMPNN 483
           P      L +LQ I + +N
Sbjct: 140 PDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLAN-LTSLRVLDVSYN 190
                L++ +N L       F EL  L +LY+  N L+ SLP  + N LTSL  L++S N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86

Query: 191 QLTENISSSPLM---HLTSIEELILSNNHFQ 218
           QL     S P      LT ++EL L+ N  Q
Sbjct: 87  QLQ----SLPNGVFDKLTQLKELALNTNQLQ 113

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 111 QELYIRDNDLRD-SLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDL 168
            EL + DN+L   S       +  L  L +  NQLT    P  F     ++EL +  N +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 169 RGSLPL-CLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
           +  +       L  L+ L++  NQ++  +      HL S+  L L++N F
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 26/122 (21%)

Query: 357 LNLSRNAFNGSIPSS--FADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ 414
           L L+ N     I S   F  +  L  L++  NQLT  I      G   ++ L L  N ++
Sbjct: 34  LLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91

Query: 415 ---GHIFSEKFNLTNLKRLQLDGNKFIGEIPE-------SLSKCYLLGG--------LYL 456
                +F     L  LK L L  N+ I  +         SL+   L            + 
Sbjct: 92  EISNKMFL---GLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147

Query: 457 SD 458
           ++
Sbjct: 148 AE 149

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 20/115 (17%)

Query: 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQG---HIFSEKFNLTNLKRLQLDGN 435
             L ++ N+L     + +      L  L L  N L G   + F      ++++ LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE---GASHIQELQLGEN 88

Query: 436 KFIGEIPE----SLSKCYLLGGLYLSDNHLSGKIPRWLG---SLLALQDIIMPNN 483
           K I EI       L +   L  L L DN +S  +    G    L +L  + + +N
Sbjct: 89  K-IKEISNKMFLGLHQ---LKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 132 TSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSY 189
           T  Q L + +NQ+T    PG F  LV L++LY ++N L  ++P      LT L  LD++ 
Sbjct: 33  TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90

Query: 190 NQLTENISSSP---LMHLTSIEELILSNN 215
           N L     S P     +L S+  + L NN
Sbjct: 91  NHLK----SIPRGAFDNLKSLTHIYLYNN 115

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 132 TSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSY 189
           +S   L + SN+L  + P G F +L  L +L +  N ++ SLP      LT L +L +  
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85

Query: 190 NQLTENISSSPLMHLTSIEELILSNNHFQ-IPISLEPLF-NLSKLKT 234
           N+L   + +     LT ++EL L  N  + +P   + +F  L+ L+ 
Sbjct: 86  NKLQS-LPNGVFDKLTQLKELALDTNQLKSVP---DGIFDRLTSLQK 128

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 25/115 (21%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF----SLEILALSNNT 412
           L L  N         F  +  L  L +S NQ+  ++P+    G F     L IL L  N 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPD----GVFDKLTKLTILYLHENK 87

Query: 413 LQ----GHIFSEKFNLTNLKRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDN 459
           LQ    G +F     LT LK L LD N+ +  +P+     L+    L  ++L  N
Sbjct: 88  LQSLPNG-VFD---KLTQLKELALDTNQ-LKSVPDGIFDRLTS---LQKIWLHTN 134

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.8 bits (115), Expect = 4e-06
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 16/141 (11%)

Query: 70  DTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQEL--------YIRDNDLR 121
            T+ L I  +   +L+ L +    L  + + D    +L +L++L        Y  D D+ 
Sbjct: 181 GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240

Query: 122 D-SLLWCLANMTSLQVLNVASNQLTGNFPPGFCE---LVLLRELYIDNNDLRGS----LP 173
               L+      +L+ L +   +        F E   L  L  + I    L       L 
Sbjct: 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300

Query: 174 LCLANLTSLRVLDVSYNQLTE 194
             +  +  L+ +++ YN L++
Sbjct: 301 DHVDKIKHLKFINMKYNYLSD 321

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 28/172 (16%), Positives = 49/172 (28%), Gaps = 23/172 (13%)

Query: 299 PENNTDLKTLLLANNSL-------FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGT-Y 350
                DL  +L A   L         +  +       L +L++ +      +  +I    
Sbjct: 158 WIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 351 LPGLMHLNLSRNAFNGSIPSSFAD---------MKMLKSLDISYNQLTGAIPERMAMGCF 401
           LP L  L L     +                     LK L I   +    + E       
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 402 --SLEILALSNNTLQG----HIFSEKFNLTNLKRLQLDGNKFIGEIPESLSK 447
              LE + +S   L       +      + +LK + +  N    E+ + L K
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 31/293 (10%), Positives = 81/293 (27%), Gaps = 26/293 (8%)

Query: 111 QELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRG 170
                      ++L      M         S            +++  ++L        G
Sbjct: 56  LIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIG 115

Query: 171 SLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLS 230
                  + + +    V   +   +        +   E+ I       +   L+ +  L+
Sbjct: 116 XWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLN 175

Query: 231 KLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNL 290
            LK       +  +           L S+ +   G   +  + +      +  +L  L L
Sbjct: 176 NLKIKGTNNLSIGKKPRP------NLKSLEIISGGLPDSVVEDIL---GSDLPNLEKLVL 226

Query: 291 SGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGT- 349
                ++  + + ++   L + +               L  L + +      +       
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKD-----------RFPNLKWLGIVDAEEQNVVVEMFLES 275

Query: 350 -YLPGLMHLNLSRNAFNGS----IPSSFADMKMLKSLDISYNQLTGAIPERMA 397
             LP L  +++S           +      +K LK +++ YN L+  + + + 
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 25/131 (19%)

Query: 83  SLRILSLSYSRLNKNTILDQGLCEL-------VHLQELYIRDNDLRDSLLWCLANM---- 131
            L  ++L+    N   I    L           ++++  I      D + + LA M    
Sbjct: 37  DLEEVNLN----NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN 92

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVL----LRELYIDNNDLR------GSLPLCLANLTS 181
            +L+ LNV SN ++G+      E +     L EL IDN            +   L   T+
Sbjct: 93  NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT 152

Query: 182 LRVLDVSYNQL 192
           L      + Q 
Sbjct: 153 LLKFGYHFTQQ 163

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 33/89 (37%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 132 TSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSY 189
           T+ QVL +  NQ+T    PG F  L  L  L +DNN L   LP      LT L  L ++ 
Sbjct: 30  TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND 87

Query: 190 NQLTENISSSP---LMHLTSIEELILSNN 215
           NQL     S P     +L S+  + L NN
Sbjct: 88  NQLK----SIPRGAFDNLKSLTHIWLLNN 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 105/642 (16%), Positives = 187/642 (29%), Gaps = 191/642 (29%)

Query: 47  HGQDF------HEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTIL 100
           H  DF      +++K++  +  D  +   D    + V +   S  ILS            
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFD---CKDVQDMPKS--ILSKE---------- 49

Query: 101 DQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFP----------- 149
                E+ H+       +     L W L +     V       L  N+            
Sbjct: 50  -----EIDHIIMSKDAVSGTL-RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 150 -PGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIE 208
            P      ++  +YI+  D      L   N       +VS  Q    +  + L+ L   +
Sbjct: 104 QPS-----MMTRMYIEQRD-----RLYNDN-QVFAKYNVSRLQPYLKLRQA-LLELRPAK 151

Query: 209 ELILSNNH----F--QIPISLEPLFNLSKLKTFNGEIY----AETESHYNSLTPKFQLTS 258
            +++              ++L+   +       + +I+        S    L    +L  
Sbjct: 152 NVLI---DGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 259 ISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLAN---NSL 315
                +         +  +     A+L  L  S  + N L         L+L N      
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---------LVLLNVQNAKA 258

Query: 316 FGSFRMPIHCLQKLATLDVSNNFFLG-----HIPVEIGTYLPGLMH----------LN-- 358
           + +F   + C   L T       FL      HI ++   +   L            L+  
Sbjct: 259 WNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCR 314

Query: 359 ---LSRNAFNGS------IPSSFADM-------------KMLKSLDISYNQLTGAIPERM 396
              L R     +      I  S  D              K+   ++ S N L  A   +M
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 397 AMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPES-LSKCY---LL- 451
                  + L+         +F    ++     L L     I       ++K +   L+ 
Sbjct: 375 ------FDRLS---------VFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 452 -----GGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLK-VLDLS 505
                  + +   +L  K+   L +  AL   I+ + N    IP  F   D +   LD  
Sbjct: 419 KQPKESTISIPSIYLELKVK--LENEYALHRSIVDHYN----IPKTFDSDDLIPPYLD-- 470

Query: 506 NNSIFGTLPSCLS--LGSIEQVHLS-------------KNKIEGQ-------------LE 537
               +    S +   L +IE                  + KI                L+
Sbjct: 471 -QYFY----SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525

Query: 538 SIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNY 579
            +  Y PY+   D  Y RL  +I   +D LP++   L+ + Y
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAI---LDFLPKIEENLICSKY 564

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 4e-04
 Identities = 96/681 (14%), Positives = 190/681 (27%), Gaps = 224/681 (32%)

Query: 241 AETESHYNSLTPKFQLTSISLSGYGDGGTFPKFL-----YHQHDLNNADLSHLNLSGEFP 295
            E +  Y  +   F+                 F+         D+  + LS      E  
Sbjct: 12  GEHQYQYKDILSVFE---------------DAFVDNFDCKDVQDMPKSILS----KEEID 52

Query: 296 NWLPENNTDLKTLLLANNSLFGSFRM-PIHCLQKL--ATLDVSNNFFLGHIPVE-IGTYL 351
           + +   +    TL L     F +        +QK     L ++  F +  I  E     +
Sbjct: 53  HIIMSKDAVSGTLRL-----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 352 PGLMHLNLSRNAFNGSIPSSFADM-----KMLKSLDISYNQLTGAIPER------MAMGC 400
              M++      +N      FA       +    L      L    P +      +  G 
Sbjct: 108 MTRMYIEQRDRLYND--NQVFAKYNVSRLQPYLKLR---QALLELRPAKNVLIDGVL-GS 161

Query: 401 --FSLEILALSNNTLQ----GHIF--------SEKFNLTNLKRL--QLDGNKFIGEIPES 444
               + +    +  +Q      IF        S +  L  L++L  Q+D        P  
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID--------PNW 213

Query: 445 LSKCYLLGGLYLSDNHLSGKIPRWLG------SLLALQDIIMPNNNLEGPIPNEFCQLDC 498
            S+      + L  + +  ++ R L        LL L ++     N +    N F  L C
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV----QNAK--AWNAF-NLSC 266

Query: 499 LKVLDLSNN-SIFGTLPSCLSLGSIEQVHLSKNKIEGQLESI------------------ 539
            K+L  +    +   L +  +   I   H S      +++S+                  
Sbjct: 267 -KILLTTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 540 IHYYPYLVTL----------------DLSYNRLHGSIPNWIDKLP----QLSYILLA--- 576
            +  P  +++                 ++ ++L   I + ++ L     +  +  L+   
Sbjct: 325 TN--PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 577 --------------NNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYY 622
                          + I+ ++ V + +L +  L++      +  IP   +   +     
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 623 DAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKL 682
            A+     H S                          + +Y    I  +    DL    L
Sbjct: 443 YAL-----HRSI-------------------------VDHY---NIPKTFDSDDLIPPYL 469

Query: 683 TGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLD------LSYNLLHGKI-- 734
                + IG+          H            N++  E +       L +  L  KI  
Sbjct: 470 DQYFYSHIGH----------H----------LKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 735 -----PPQLIVLNTLAVFRVAYNNLSGKIPD---RVAQFSTF----EEDSYEGNPFLCGL 782
                     +LNTL   +     +    P     V     F    EE+      +   L
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS-KYTDLL 568

Query: 783 PLSKSCDDNGLTTVTTEAYTE 803
            ++   +D     +  EA+ +
Sbjct: 569 RIALMAEDEA---IFEEAHKQ 586

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 32/143 (22%)

Query: 74  LQIVSESMASLRILSLSYSRLNKNTILDQGLCELV-------HLQELYIRDNDLRDSLLW 126
           +  + E    L+ ++++    N   +  + +  L+       H+++  + +  + DS   
Sbjct: 33  INRLREDDTDLKEVNIN----NMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR 88

Query: 127 CLANM----TSLQVLNVASNQLTGNFPPGFCELVL-------LRELYIDNNDLRG----- 170
            L  +     SL+VLNV SN LT         L+        + E   DN          
Sbjct: 89  GLIELIETSPSLRVLNVESNFLTPE---LLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145

Query: 171 --SLPLCLANLTSLRVLDVSYNQ 191
              + + +    SL  + +S+  
Sbjct: 146 EMDMMMAIEENESLLRVGISFAS 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	874
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.09
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.54
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.94
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.6
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.41
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.36
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.24

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-79  Score=732.82  Aligned_cols=672  Identities=29%  Similarity=0.425  Sum_probs=490.2

Q ss_pred             CCCEEecCCCCCCCCc---hhhhccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCcccc--ccc--hhHHHHH
Q 042603            6 NLEELILVESDLHVSQ---LLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVE--VDT--SFLQIVS   78 (874)
Q Consensus         6 ~L~~L~Ls~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~--~~~~~~~   78 (874)
                      +++.|+|+++.+ .+.   ++..+..+++|+.++++.+.+.. ++ ..+.++++|++|++++|.+.  ++.  .     +
T Consensus        51 ~v~~L~L~~~~l-~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----l  122 (768)
T 3rgz_A           51 KVTSIDLSSKPL-NVGFSAVSSSLLSLTGLESLFLSNSHING-SV-SGFKCSASLTSLDLSRNSLSGPVTTLTS-----L  122 (768)
T ss_dssp             EEEEEECTTSCC-CEEHHHHHHHTTTCTTCCEEECTTSCEEE-CC-CCCCCCTTCCEEECCSSEEEEEGGGGGG-----G
T ss_pred             cEEEEECCCCCc-CCccCccChhHhccCcccccCCcCCCcCC-Cc-hhhccCCCCCEEECCCCcCCCcCCChHH-----H
Confidence            466677777766 444   66667777777777777665532 22 35667777777777777665  333  3     5


Q ss_pred             hcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhc---ccCCCCCCEEEccCCcCCCCCcccccCC
Q 042603           79 ESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWC---LANMTSLQVLNVASNQLTGNFPPGFCEL  155 (874)
Q Consensus        79 ~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~---~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  155 (874)
                      +++++|++|++++|.+....+ ...+.++++|++|++++|++++..+..   +.++++|++|++++|.+.+..|  +..+
T Consensus       123 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l  199 (768)
T 3rgz_A          123 GSCSGLKFLNVSSNTLDFPGK-VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC  199 (768)
T ss_dssp             GGCTTCCEEECCSSEEECCSS-CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTC
T ss_pred             hCCCCCCEEECcCCccCCcCC-HHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccC
Confidence            667777777777776654221 122356677777777777776666655   5667777777777777665544  2566


Q ss_pred             CCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCcee
Q 042603          156 VLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF  235 (874)
Q Consensus       156 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l  235 (874)
                      ++|++|++++|.+.+.+|. ++++++|++|++++|.+++.++. .+.++++|++|++++|.+.+.               
T Consensus       200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~---------------  262 (768)
T 3rgz_A          200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGP---------------  262 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEES---------------
T ss_pred             CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCc---------------
Confidence            7777777777777665555 66777777777777777665454 566677777777766655432               


Q ss_pred             ccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcc
Q 042603          236 NGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL  315 (874)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l  315 (874)
                                                        +|..  .+++|++|++++|.+.+.+|..++..+++|++|++++|.+
T Consensus       263 ----------------------------------~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l  306 (768)
T 3rgz_A          263 ----------------------------------IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF  306 (768)
T ss_dssp             ----------------------------------CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred             ----------------------------------cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence                                              2222  4567777778888777777777655567888888888888


Q ss_pred             cccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCC-CcCEEEcccCcCCCCchh
Q 042603          316 FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMK-MLKSLDISYNQLTGAIPE  394 (874)
Q Consensus       316 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~  394 (874)
                      .+..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++.+|..+.+++ +|++|++++|++++.+|.
T Consensus       307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~  386 (768)
T 3rgz_A          307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP  386 (768)
T ss_dssp             EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred             CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence            7777777888888888888888887777777555577888888888888777777777776 788888888887776666


Q ss_pred             HHHh-cCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccc
Q 042603          395 RMAM-GCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLL  473 (874)
Q Consensus       395 ~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  473 (874)
                      .+.. .+++|++|++++|.+++.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.+|..+..++
T Consensus       387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  466 (768)
T 3rgz_A          387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK  466 (768)
T ss_dssp             TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence            5542 256778888888887777777777778888888888887777777777777888888888887777777777777


Q ss_pred             cCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEcc
Q 042603          474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS  552 (874)
Q Consensus       474 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls  552 (874)
                      +|++|++++|++.+.+|..+..+++|++|++++|++++.+|..+. +++|++|++++|++++..|..+..+++|++|+++
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            888888888887777777777777788888888877777776654 7777777777777777777777777777777777


Q ss_pred             CccCCCCCchhhcCCCCCcEEEccCc----------------------cCcccCCccccCCCCCCEEEccCCcCCCCCCc
Q 042603          553 YNRLHGSIPNWIDKLPQLSYILLANN----------------------YIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP  610 (874)
Q Consensus       553 ~n~l~~~~~~~~~~l~~L~~L~l~~n----------------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  610 (874)
                      +|++++.+|.++.....+..+.+..+                      .+.+..+..+..++.++.++++.|.++|.+|.
T Consensus       547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~  626 (768)
T 3rgz_A          547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP  626 (768)
T ss_dssp             SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred             CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence            77777777777666555444333221                      12223333334444444445555555554444


Q ss_pred             hhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccc
Q 042603          611 CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI  690 (874)
Q Consensus       611 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~  690 (874)
                      .+..                                                      +++|+.|||++|+++|.+|..+
T Consensus       627 ~~~~------------------------------------------------------l~~L~~LdLs~N~l~g~ip~~l  652 (768)
T 3rgz_A          627 TFDN------------------------------------------------------NGSMMFLDMSYNMLSGYIPKEI  652 (768)
T ss_dssp             SCSS------------------------------------------------------SBCCCEEECCSSCCBSCCCGGG
T ss_pred             hhhc------------------------------------------------------cccccEEECcCCcccccCCHHH
Confidence            3322                                                      4589999999999999999999


Q ss_pred             cccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCc
Q 042603          691 GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEE  770 (874)
Q Consensus       691 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~  770 (874)
                      +.+++|+.|+|++|+++|.+|+.|+++++|++||||+|+++|.+|+.++.+++|++|++++|+++|.+|.. +++.++..
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~  731 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPP  731 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCG
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999995 89999999


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCccc
Q 042603          771 DSYEGNPFLCGLPLSKSCDDNGLTTVT  797 (874)
Q Consensus       771 ~~~~gNp~~C~~~l~~~c~~~~~~~~~  797 (874)
                      .+|.|||++||.|+. .|.......|.
T Consensus       732 ~~~~gN~~Lcg~~l~-~C~~~~~~~~~  757 (768)
T 3rgz_A          732 AKFLNNPGLCGYPLP-RCDPSNADGYA  757 (768)
T ss_dssp             GGGCSCTEEESTTSC-CCCSCC-----
T ss_pred             HHhcCCchhcCCCCc-CCCCCccCCCC
Confidence            999999999999987 89866655543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.5e-71  Score=658.43  Aligned_cols=658  Identities=26%  Similarity=0.356  Sum_probs=485.4

Q ss_pred             CCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchh--cccCCC
Q 042603           55 KNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLW--CLANMT  132 (874)
Q Consensus        55 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~--~~~~l~  132 (874)
                      .+++.|+++++.+......+...+..+++|+.++++.+.+..   .+..++++++|++|++++|.+++.+|.  .+++++
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~---l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~  126 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING---SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS  126 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE---CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC---CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCC
Confidence            345555555554431111122235555666666665554422   345666677777777777776666665  667777


Q ss_pred             CCCEEEccCCcCCCCCcccc-cCCCCCCEEEccCCcCCCCcccc---ccCCCCCCEEEcccccccccCCccccCCCCCCC
Q 042603          133 SLQVLNVASNQLTGNFPPGF-CELVLLRELYIDNNDLRGSLPLC---LANLTSLRVLDVSYNQLTENISSSPLMHLTSIE  208 (874)
Q Consensus       133 ~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  208 (874)
                      +|++|++++|.+.+..|..+ .++++|++|++++|.+++..|..   +.++++|++|++++|.+++.++   +..+++|+
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~  203 (768)
T 3rgz_A          127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLE  203 (768)
T ss_dssp             TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCC
T ss_pred             CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCC
Confidence            77777777776666666554 56677777777777766655555   5666777777777776665332   35566666


Q ss_pred             EEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCC
Q 042603          209 ELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHL  288 (874)
Q Consensus       209 ~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n  288 (874)
                      +|++++|.+.+                                                 .+|. ++.+++|++|++++|
T Consensus       204 ~L~Ls~n~l~~-------------------------------------------------~~~~-l~~l~~L~~L~Ls~n  233 (768)
T 3rgz_A          204 FLDVSSNNFST-------------------------------------------------GIPF-LGDCSALQHLDISGN  233 (768)
T ss_dssp             EEECCSSCCCS-------------------------------------------------CCCB-CTTCCSCCEEECCSS
T ss_pred             EEECcCCcCCC-------------------------------------------------CCcc-cccCCCCCEEECcCC
Confidence            66666665543                                                 3333 455566666666666


Q ss_pred             CCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCccc
Q 042603          289 NLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSI  368 (874)
Q Consensus       289 ~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~  368 (874)
                      .+.+.+|..+ ..+++|++|++++|.+.+..+..  .+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+
T Consensus       234 ~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~  310 (768)
T 3rgz_A          234 KLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV  310 (768)
T ss_dssp             CCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred             cCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence            6665555554 56666777777777666655543  67778888888888777777777665678888888888888888


Q ss_pred             chhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCC-CCCeEEccCCcCcccCCccccc
Q 042603          369 PSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLT-NLKRLQLDGNKFIGEIPESLSK  447 (874)
Q Consensus       369 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~  447 (874)
                      |..|.++++|++|++++|.+++.+|...+..+++|++|++++|.+++.+|..+..++ +|++|++++|++++..|..+..
T Consensus       311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~  390 (768)
T 3rgz_A          311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ  390 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred             chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence            888888888888888888888778877666788888888888888877887777776 8888888888888777777665


Q ss_pred             --cCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccE
Q 042603          448 --CYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQ  524 (874)
Q Consensus       448 --~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~  524 (874)
                        +++|++|++++|.+++.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+. +++|++
T Consensus       391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence              77888888888888888888888888888888888888888888888888899999999888888877654 788999


Q ss_pred             EEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcC
Q 042603          525 VHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL  604 (874)
Q Consensus       525 L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l  604 (874)
                      |++++|++++..|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|+.||+++|++
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            99999999988888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCc-cceEEEEecCcccccccccccCcceEEcCCCccc
Q 042603          605 SGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGK-EETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLT  683 (874)
Q Consensus       605 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~  683 (874)
                      +|.+|.+++...............        ..++......... .........+.... ....++.+..++++.|.++
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~  621 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGKR--------YVYIKNDGMKKECHGAGNLLEFQGIRSE-QLNRLSTRNPCNITSRVYG  621 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSCE--------EEEEECCSCCTTCCSSEEEEECTTCCGG-GGGGGGGTCCSCTTSCEEE
T ss_pred             CCcCChHHhcccchhhhhcccccc--------ccccccccccccccccccccccccccch-hhhccccccccccccceec
Confidence            999998876643111100000000        0000000000000 00000000110000 0112456667889999999


Q ss_pred             ccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccc
Q 042603          684 GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVA  763 (874)
Q Consensus       684 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~  763 (874)
                      |.+|..++.+++|++|||++|+++|.+|..|+++++|+.|||++|+++|.+|+.++++++|+.||+++|+++|.+|..+.
T Consensus       622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCCC
Q 042603          764 QFSTFEEDSYEGNPFLC  780 (874)
Q Consensus       764 ~~~~l~~~~~~gNp~~C  780 (874)
                      .++.++.+++++|+...
T Consensus       702 ~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          702 ALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             GCCCCSEEECCSSEEEE
T ss_pred             CCCCCCEEECcCCcccc
Confidence            99999999999998654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.7e-60  Score=565.39  Aligned_cols=572  Identities=22%  Similarity=0.253  Sum_probs=324.1

Q ss_pred             CCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEE
Q 042603           82 ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLREL  161 (874)
Q Consensus        82 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  161 (874)
                      +++++|++++|.++..  .+..|+++++|++|++++|.+++..|.+|+++++|++|++++|.+++..+..|.++++|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRL--PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCC--CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCc--CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence            4566666666665542  23445566666666666666665555556666666666666666654433455666666666


Q ss_pred             EccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceecccccc
Q 042603          162 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYA  241 (874)
Q Consensus       162 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~  241 (874)
                      ++++|.+++..|..|+++++|++|++++|.+++..+. .+.++++|++|++++|.+++                      
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~----------------------  159 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQA----------------------  159 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCC----------------------
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccc----------------------
Confidence            6666666555555566666666666666665543222 45555556655555554432                      


Q ss_pred             ccccccCCCCCCceeeEEEccCCCCCCCCChhc--cCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccc
Q 042603          242 ETESHYNSLTPKFQLTSISLSGYGDGGTFPKFL--YHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSF  319 (874)
Q Consensus       242 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~  319 (874)
                                                 ..+..+  ..+++|++|++++|.+.+..|..+ ..+++|+.+++.++.+....
T Consensus       160 ---------------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~~~l~~~~  211 (680)
T 1ziw_A          160 ---------------------------LKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSL  211 (680)
T ss_dssp             ---------------------------BCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-GGSSEECEEECTTCCCHHHH
T ss_pred             ---------------------------cCHHHhhccccccccEEECCCCcccccChhhh-hhhhhhhhhhccccccChhh
Confidence                                       111111  123445555555555554333332 34455555555544433211


Q ss_pred             cCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCC--cCEEEcccCcCCCCchhHHH
Q 042603          320 RMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKM--LKSLDISYNQLTGAIPERMA  397 (874)
Q Consensus       320 ~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~--L~~L~l~~n~i~~~~~~~~~  397 (874)
                      ...+                    +...  ..++|++|++++|.+++..|..|.+++.  |++|++++|++++..+.. +
T Consensus       212 ~~~~--------------------~~~l--~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~  268 (680)
T 1ziw_A          212 TEKL--------------------CLEL--ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-F  268 (680)
T ss_dssp             HHHH--------------------HHHH--TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT-T
T ss_pred             HHHH--------------------HHHh--hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc-c
Confidence            1000                    0000  0234455555555544444444444432  555555555544222222 2


Q ss_pred             hcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcc-----cCC----ccccccCCCCeEEccCCcCCCCCchh
Q 042603          398 MGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIG-----EIP----ESLSKCYLLGGLYLSDNHLSGKIPRW  468 (874)
Q Consensus       398 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~  468 (874)
                      ..+++|++|++++|.+++..+..+..+++|+.|++++|...+     .+|    ..+..+++|++|++++|.+.+..+..
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~  348 (680)
T 1ziw_A          269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM  348 (680)
T ss_dssp             TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred             cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence            234455555555555554444444455555555554443221     111    13445555555555555555555555


Q ss_pred             hhccccCCeeecCCCcccc--cCCccccC--CCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccc-hhhhhc
Q 042603          469 LGSLLALQDIIMPNNNLEG--PIPNEFCQ--LDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQL-ESIIHY  542 (874)
Q Consensus       469 ~~~l~~L~~L~l~~n~l~~--~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~-~~~~~~  542 (874)
                      |..+++|++|++++|.+..  .....|..  .++|+.|++++|++++..|..+. +++|+.|++++|.+++.. +..|..
T Consensus       349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  428 (680)
T 1ziw_A          349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG  428 (680)
T ss_dssp             TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred             hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence            5555555555555554321  11122222  13566666666666555554443 556666666666665433 245666


Q ss_pred             CCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc--ccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccc
Q 042603          543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE--GEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEG  620 (874)
Q Consensus       543 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~  620 (874)
                      +++|++|++++|++.+..+..+..+++|+.|++++|.+.  +..|..+..+++|+.|++++|++++..|..+..      
T Consensus       429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~------  502 (680)
T 1ziw_A          429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG------  502 (680)
T ss_dssp             CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT------
T ss_pred             cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc------
Confidence            666666666666666555566666666666666666654  345566666666666666666665333322222      


Q ss_pred             cccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccC--------Cccccc
Q 042603          621 YYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI--------PTQIGY  692 (874)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~--------p~~~~~  692 (874)
                                                                      +++|+.|++++|++++..        +..|++
T Consensus       503 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~  534 (680)
T 1ziw_A          503 ------------------------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKG  534 (680)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred             ------------------------------------------------ccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence                                                            235666666666665432        224778


Q ss_pred             cccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccc-cCCCCCcc
Q 042603          693 LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVA-QFSTFEED  771 (874)
Q Consensus       693 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~-~~~~l~~~  771 (874)
                      +++|++|+|++|+++.+.+..|+++++|+.|||++|++++..+..+..+++|+.|++++|++++.+|..+. .+++++.+
T Consensus       535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l  614 (680)
T 1ziw_A          535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL  614 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred             CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence            88899999999999866666788999999999999999977777788889999999999999988887666 68889999


Q ss_pred             cccCCCCCCCCC
Q 042603          772 SYEGNPFLCGLP  783 (874)
Q Consensus       772 ~~~gNp~~C~~~  783 (874)
                      ++.||||.|+|+
T Consensus       615 ~l~~N~~~c~c~  626 (680)
T 1ziw_A          615 DMRFNPFDCTCE  626 (680)
T ss_dssp             ECTTCCCCBCCC
T ss_pred             EccCCCcccCCc
Confidence            999999999665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.9e-58  Score=546.20  Aligned_cols=604  Identities=22%  Similarity=0.179  Sum_probs=463.8

Q ss_pred             CEEEccCCcccccccCccccCCCCCcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCc
Q 042603           33 KYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQ  111 (874)
Q Consensus        33 ~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~  111 (874)
                      +.++++++.++ .+|. .+.  +++++|++++|.+. ++..    .+.++++|++|++++|.+++.  .+..++++++|+
T Consensus         7 ~~~~cs~~~L~-~ip~-~~~--~~l~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~   76 (680)
T 1ziw_A            7 EVADCSHLKLT-QVPD-DLP--TNITVLNLTHNQLRRLPAA----NFTRYSQLTSLDVGFNTISKL--EPELCQKLPMLK   76 (680)
T ss_dssp             SEEECCSSCCS-SCCS-CSC--TTCSEEECCSSCCCCCCGG----GGGGGTTCSEEECCSSCCCCC--CTTHHHHCTTCC
T ss_pred             CeeECCCCCcc-cccc-ccC--CCCcEEECCCCCCCCcCHH----HHhCCCcCcEEECCCCccCcc--CHHHHhcccCcC
Confidence            67899998885 5653 333  78999999999987 3332    278999999999999999874  457899999999


Q ss_pred             EEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEccccc
Q 042603          112 ELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ  191 (874)
Q Consensus       112 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  191 (874)
                      +|++++|.+++..+.+|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++++|.
T Consensus        77 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A           77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK  156 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred             EEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence            99999999998877789999999999999999998877899999999999999999999889999999999999999999


Q ss_pred             ccccCCccccC--CCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCC
Q 042603          192 LTENISSSPLM--HLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGT  269 (874)
Q Consensus       192 l~~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  269 (874)
                      +++ ++...+.  .+++|++|++++|.+.+                                                 .
T Consensus       157 l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~-------------------------------------------------~  186 (680)
T 1ziw_A          157 IQA-LKSEELDIFANSSLKKLELSSNQIKE-------------------------------------------------F  186 (680)
T ss_dssp             CCC-BCHHHHGGGTTCEESEEECTTCCCCC-------------------------------------------------B
T ss_pred             ccc-cCHHHhhccccccccEEECCCCcccc-------------------------------------------------c
Confidence            987 4432433  45777777777776543                                                 2


Q ss_pred             CChhccCCCCCCEEEcCCCCCcccCCcchh--cCCCCCCEEEccCCcccccccCCccCCCc--ccEEEccCCcCCccCCh
Q 042603          270 FPKFLYHQHDLNNADLSHLNLSGEFPNWLP--ENNTDLKTLLLANNSLFGSFRMPIHCLQK--LATLDVSNNFFLGHIPV  345 (874)
Q Consensus       270 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~Ls~n~l~~~i~~  345 (874)
                      .|..+..+++|+.++++++.+.+.....+.  ...++|++|++++|.+.+..+..+..++.  |++|++++|.+.+..| 
T Consensus       187 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-  265 (680)
T 1ziw_A          187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-  265 (680)
T ss_dssp             CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-
T ss_pred             ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-
Confidence            334445555666666666665432221111  13467888888888888887777777755  8888888888874443 


Q ss_pred             hhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCC
Q 042603          346 EIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLT  425 (874)
Q Consensus       346 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  425 (874)
                      ..+..+++|++|++++|.+.+..|..|.++++|++|++++|...+.++..                .+.......+..++
T Consensus       266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~----------------~lp~i~~~~~~~l~  329 (680)
T 1ziw_A          266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA----------------SLPKIDDFSFQWLK  329 (680)
T ss_dssp             TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----------------------CCEECTTTTTTCT
T ss_pred             ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc----------------cccccChhhcccCC
Confidence            44455788999999999888888888888888999988887655322210                01111122344566


Q ss_pred             CCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCC--CCchhhhcc--ccCCeeecCCCcccccCCccccCCCCCCE
Q 042603          426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG--KIPRWLGSL--LALQDIIMPNNNLEGPIPNEFCQLDCLKV  501 (874)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  501 (874)
                      +|++|++++|++++..+..+..+++|++|++++|.+..  ..+..+..+  ++|+.|++++|++.+..|..+..+++|+.
T Consensus       330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  409 (680)
T 1ziw_A          330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV  409 (680)
T ss_dssp             TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence            66666666666666666666666666666666665432  111223322  47888888888888888888888888888


Q ss_pred             EECcCCcCcccCCC-C-CCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCC--CCCchhhcCCCCCcEEEccC
Q 042603          502 LDLSNNSIFGTLPS-C-LSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH--GSIPNWIDKLPQLSYILLAN  577 (874)
Q Consensus       502 L~L~~n~l~~~~~~-~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~l~~  577 (874)
                      |++++|++.+.+|. . ..+++|++|++++|++++..+..|..+++|+.|++++|.+.  +..|.++..+++|++|++++
T Consensus       410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~  489 (680)
T 1ziw_A          410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN  489 (680)
T ss_dssp             EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred             EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence            88888888776653 2 34788889999999888888888999999999999999987  56788899999999999999


Q ss_pred             ccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEe
Q 042603          578 NYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTT  657 (874)
Q Consensus       578 n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  657 (874)
                      |++++..+..+.++++|+.|++++|++++..+..+....                         .               
T Consensus       490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-------------------------~---------------  529 (680)
T 1ziw_A          490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP-------------------------I---------------  529 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC-------------------------C---------------
T ss_pred             CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc-------------------------c---------------
Confidence            999988888899999999999999998742211110000                         0               


Q ss_pred             cCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChh
Q 042603          658 KNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ  737 (874)
Q Consensus       658 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~  737 (874)
                            .....+++|+.|++++|+++...+..|+++++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..
T Consensus       530 ------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  603 (680)
T 1ziw_A          530 ------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV  603 (680)
T ss_dssp             ------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred             ------hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence                  00012568999999999999655567999999999999999999888888999999999999999999998888


Q ss_pred             hh-cCCCCCeEEccCCCCcccCC
Q 042603          738 LI-VLNTLAVFRVAYNNLSGKIP  759 (874)
Q Consensus       738 l~-~l~~L~~l~ls~N~l~~~~p  759 (874)
                      +. .+++|+.+++++|++.+..+
T Consensus       604 ~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          604 FGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             HHHHHTTCSEEECTTCCCCBCCC
T ss_pred             hcccccccCEEEccCCCcccCCc
Confidence            87 88999999999999988665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4e-57  Score=546.00  Aligned_cols=539  Identities=22%  Similarity=0.198  Sum_probs=349.7

Q ss_pred             CEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCC-cccccCCCCCCEEEc
Q 042603           85 RILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNF-PPGFCELVLLRELYI  163 (874)
Q Consensus        85 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L  163 (874)
                      +..+.++++++.   +|.   -.+++++|++++|.+++..+..|.++++|++|+|++|...+.+ |..|.++++|++|+|
T Consensus         7 ~~~dcs~~~L~~---vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L   80 (844)
T 3j0a_A            7 RIAFYRFCNLTQ---VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL   80 (844)
T ss_dssp             EEEEESCCCSSC---CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred             eEEEccCCCCCC---CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence            356666676665   233   4567888888888888777788888888888888888554444 667888888888888


Q ss_pred             cCCcCCCCccccccCCCCCCEEEcccccccccCCc-cccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccc
Q 042603          164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS-SPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAE  242 (874)
Q Consensus       164 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~  242 (874)
                      ++|.+.+..|..|+++++|++|+|++|.+++.++. ..+.++++|++|++++|.+.+.                      
T Consensus        81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~----------------------  138 (844)
T 3j0a_A           81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL----------------------  138 (844)
T ss_dssp             TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC----------------------
T ss_pred             CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc----------------------
Confidence            88888877788888888888888888888764443 2377777888888777765421                      


Q ss_pred             cccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCC--CCCCEEEccCCccccccc
Q 042603          243 TESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENN--TDLKTLLLANNSLFGSFR  320 (874)
Q Consensus       243 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l--~~L~~L~L~~n~l~~~~~  320 (874)
                                                ..+..++++++|++|++++|.+.+..|..+ ..+  ++|+.|++++|.+.+..+
T Consensus       139 --------------------------~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~  191 (844)
T 3j0a_A          139 --------------------------YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVS  191 (844)
T ss_dssp             --------------------------CCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCC
T ss_pred             --------------------------ccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccc
Confidence                                      122456677788888888888876666554 333  677777777777776666


Q ss_pred             CCccCCCc------ccEEEccCCcCCccCChhhhcCC--CCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCc
Q 042603          321 MPIHCLQK------LATLDVSNNFFLGHIPVEIGTYL--PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAI  392 (874)
Q Consensus       321 ~~~~~l~~------L~~L~Ls~n~l~~~i~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~  392 (874)
                      ..+..+.+      |++|++++|.+.+.++..+...+  +.++.+.++.+.+...               ...+.+.+ .
T Consensus       192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~-~  255 (844)
T 3j0a_A          192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIKD-P  255 (844)
T ss_dssp             CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSSTT-G
T ss_pred             cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccCC-C
Confidence            55554444      66777777766655555444322  3455565554332210               11222221 1


Q ss_pred             hhHHHhc--CCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhh
Q 042603          393 PERMAMG--CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLG  470 (874)
Q Consensus       393 ~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  470 (874)
                      ....+.+  .++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..|..+++|++|++++|.+++..|..+.
T Consensus       256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  335 (844)
T 3j0a_A          256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY  335 (844)
T ss_dssp             GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred             ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence            1111222  25677777777777766666667777777777777777766666677777777777777777666666677


Q ss_pred             ccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEE
Q 042603          471 SLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLD  550 (874)
Q Consensus       471 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  550 (874)
                      .+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++. +.   +++|+.|++++|+++.+...    ..+++.|+
T Consensus       336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~---~~~L~~L~l~~N~l~~l~~~----~~~l~~L~  407 (844)
T 3j0a_A          336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF---IPSIPDIFLSGNKLVTLPKI----NLTANLIH  407 (844)
T ss_dssp             SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS---CCSCSEEEEESCCCCCCCCC----CTTCCEEE
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC---CCCcchhccCCCCccccccc----ccccceee
Confidence            777777777777777666666666667777777777666522 11   45566666666665543221    23455555


Q ss_pred             ccCccCCCCC-chhhcCCCCCcEEEccCccCcccCCc-cccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCC
Q 042603          551 LSYNRLHGSI-PNWIDKLPQLSYILLANNYIEGEIPV-QLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPT  628 (874)
Q Consensus       551 Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~  628 (874)
                      +++|++++.. +..+..+++|++|++++|++++..+. .+..++                                    
T Consensus       408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~------------------------------------  451 (844)
T 3j0a_A          408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP------------------------------------  451 (844)
T ss_dssp             CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT------------------------------------
T ss_pred             cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC------------------------------------
Confidence            5555555422 12233444555555555544432221 122333                                    


Q ss_pred             ccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccc-----ccCCccccccccCCeEecCC
Q 042603          629 WDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLT-----GEIPTQIGYLTRIRALNLSH  703 (874)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~  703 (874)
                                                                +|+.|++++|.++     +..|..|..+++|++|+|++
T Consensus       452 ------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~  489 (844)
T 3j0a_A          452 ------------------------------------------SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH  489 (844)
T ss_dssp             ------------------------------------------TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred             ------------------------------------------ccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence                                                      4555555555554     34456677788888888888


Q ss_pred             cccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          704 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       704 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      |++++.+|..|.++++|+.|||++|+|++..|..+.  ++|+.|++++|++++.+|..+   ..+..+++.||||.|+|+
T Consensus       490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence            888888888888888888888888888877666655  778888888888888888653   467778888888888776


Q ss_pred             CC
Q 042603          784 LS  785 (874)
Q Consensus       784 l~  785 (874)
                      +.
T Consensus       565 ~~  566 (844)
T 3j0a_A          565 LS  566 (844)
T ss_dssp             CC
T ss_pred             cH
Confidence            53

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.6e-55  Score=510.99  Aligned_cols=536  Identities=19%  Similarity=0.185  Sum_probs=304.0

Q ss_pred             EEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccC
Q 042603           86 ILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDN  165 (874)
Q Consensus        86 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  165 (874)
                      .++.++..++.   +|..+.  +++++|++++|.+++..+.+|+++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus        16 ~~~c~~~~l~~---iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           16 TYNCENLGLNE---IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             EEECTTSCCSS---CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             eEECCCCCccc---CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence            44444444443   233332  2566777777777666666677777777777777776666666677777777777777


Q ss_pred             CcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceecccccccccc
Q 042603          166 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETES  245 (874)
Q Consensus       166 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~  245 (874)
                      |++++..|..|+++++|++|++++|.+++ ++...+.++++|++|++++|.+.+..                        
T Consensus        91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~------------------------  145 (606)
T 3t6q_A           91 NPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIK------------------------  145 (606)
T ss_dssp             CCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCC------------------------
T ss_pred             CcccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccC------------------------
Confidence            77666666667777777777777776665 32225666666666666666543200                        


Q ss_pred             ccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCC--EEEccCCcccccccCCc
Q 042603          246 HYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLK--TLLLANNSLFGSFRMPI  323 (874)
Q Consensus       246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~--~L~L~~n~l~~~~~~~~  323 (874)
                                              .|... .+++|++|++++|.+.+..|.. +..+++|+  .|++++|.+.+..+..+
T Consensus       146 ------------------------~~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~  199 (606)
T 3t6q_A          146 ------------------------LPKGF-PTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAF  199 (606)
T ss_dssp             ------------------------CCTTC-CCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred             ------------------------ccccc-CCcccCEEEcccCcccccChhh-hhhhcccceeEEecCCCccCccChhHh
Confidence                                    01111 1334444444444444222222 23444444  44555555444444333


Q ss_pred             cCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCC----CCchhHHHhc
Q 042603          324 HCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT----GAIPERMAMG  399 (874)
Q Consensus       324 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~----~~~~~~~~~~  399 (874)
                      .. .+|++|++++|                         .   ..+..+..+.++....+.-..+.    ..++...+.+
T Consensus       200 ~~-~~L~~L~l~~~-------------------------~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~  250 (606)
T 3t6q_A          200 DS-AVFQSLNFGGT-------------------------Q---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG  250 (606)
T ss_dssp             TT-CEEEEEECTTC-------------------------S---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred             hh-ccccccccCCc-------------------------h---hHHHHhhhccccchhheechhhccccccccChhHhch
Confidence            22 34444444444                         3   12222222222222222111111    0111222222


Q ss_pred             CC--CCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCe
Q 042603          400 CF--SLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQD  477 (874)
Q Consensus       400 ~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  477 (874)
                      +.  +|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus       251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  329 (606)
T 3t6q_A          251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH  329 (606)
T ss_dssp             GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred             hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence            22  5666666666666666655666666666666666665 45555666666666666666666555555666666666


Q ss_pred             eecCCCcccccCCc-cccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccC
Q 042603          478 IIMPNNNLEGPIPN-EFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRL  556 (874)
Q Consensus       478 L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  556 (874)
                      |++++|.+.+.++. .+..+++|++|++++|++.+..+                     .+..+..+++|++|++++|++
T Consensus       330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~~~l~~L~~L~l~~n~l  388 (606)
T 3t6q_A          330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC---------------------CNLQLRNLSHLQSLNLSYNEP  388 (606)
T ss_dssp             EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE---------------------STTTTTTCTTCCEEECCSCSC
T ss_pred             EECCCCCcccccchhhhhccCcCCEEECCCCccccccC---------------------cchhcccCCCCCEEECCCCcC
Confidence            66666655543332 35555555555555555544320                     033444455555555555555


Q ss_pred             CCCCchhhcCCCCCcEEEccCccCcccCCcc-ccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCC
Q 042603          557 HGSIPNWIDKLPQLSYILLANNYIEGEIPVQ-LCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAP  635 (874)
Q Consensus       557 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~  635 (874)
                      .+..|..+..+++|++|++++|++.+..+.. +..+++|+.|++++|.+++..|..+..                     
T Consensus       389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------  447 (606)
T 3t6q_A          389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG---------------------  447 (606)
T ss_dssp             EEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT---------------------
T ss_pred             CcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC---------------------
Confidence            5444555555555555555555555443332 555555555555555555444433322                     


Q ss_pred             CcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccccc---CCccccccccCCeEecCCcccccchhh
Q 042603          636 ALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE---IPTQIGYLTRIRALNLSHNNLTGTIPT  712 (874)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~  712 (874)
                                                       +++|+.|++++|.+++.   .+..++.+++|++|+|++|++++..|.
T Consensus       448 ---------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  494 (606)
T 3t6q_A          448 ---------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH  494 (606)
T ss_dssp             ---------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred             ---------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence                                             23555566666665542   235577777888888888888877777


Q ss_pred             hccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          713 TFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       713 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      .|+++++|++|||++|++++.+|..+..++.| .|++++|++++.+|..+..+++++.+++.||||.|+|+
T Consensus       495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            88888888888888888888888888888888 88888888887777777777888888888888888654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-52  Score=490.68  Aligned_cols=537  Identities=18%  Similarity=0.186  Sum_probs=406.0

Q ss_pred             EEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEE
Q 042603           59 HLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVL  137 (874)
Q Consensus        59 ~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  137 (874)
                      +++.++..+. +|..       -.+.+++|++++|.++..  .+..|+++++|++|++++|++++..|.+|+++++|++|
T Consensus        16 ~~~c~~~~l~~iP~~-------l~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   86 (606)
T 3t6q_A           16 TYNCENLGLNEIPGT-------LPNSTECLEFSFNVLPTI--QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL   86 (606)
T ss_dssp             EEECTTSCCSSCCTT-------SCTTCCEEECTTCCCSEE--CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             eEECCCCCcccCcCC-------CCCcCcEEEccCCccCcC--ChhHhccCccceEEECCCCccceeChhhccCccccCee
Confidence            4555555544 4433       234689999999988763  35788999999999999999998889999999999999


Q ss_pred             EccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEcccccc
Q 042603          138 NVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF  217 (874)
Q Consensus       138 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~  217 (874)
                      ++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|++++ ++...+..+++|++|++++|.+
T Consensus        87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l  165 (606)
T 3t6q_A           87 VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAI  165 (606)
T ss_dssp             ECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCC
T ss_pred             eCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcc
Confidence            999999998888899999999999999999998778889999999999999999986 3322455689999999988876


Q ss_pred             ccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCC--EEEcCCCCCcccCC
Q 042603          218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLN--NADLSHLNLSGEFP  295 (874)
Q Consensus       218 ~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~n~l~~~~p  295 (874)
                      .+                                                 ..|..++.+++|+  .+++++|.+.+..|
T Consensus       166 ~~-------------------------------------------------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~  196 (606)
T 3t6q_A          166 HY-------------------------------------------------LSKEDMSSLQQATNLSLNLNGNDIAGIEP  196 (606)
T ss_dssp             CE-------------------------------------------------ECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred             cc-------------------------------------------------cChhhhhhhcccceeEEecCCCccCccCh
Confidence            53                                                 1234455566677  78888888887666


Q ss_pred             cchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCC
Q 042603          296 NWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADM  375 (874)
Q Consensus       296 ~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l  375 (874)
                      ..+  ....|++|++++|..   .+..+..+.+++...+....+.            .+....+.        +..|..+
T Consensus       197 ~~~--~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~------------~~~~~~i~--------~~~~~~l  251 (606)
T 3t6q_A          197 GAF--DSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFE------------DMDDEDIS--------PAVFEGL  251 (606)
T ss_dssp             TTT--TTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCT------------TSCCCCCC--------GGGGGGG
T ss_pred             hHh--hhccccccccCCchh---HHHHhhhccccchhheechhhc------------cccccccC--------hhHhchh
Confidence            553  446899999999863   2223333444433333322111            11111111        2222222


Q ss_pred             C--CcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCe
Q 042603          376 K--MLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGG  453 (874)
Q Consensus       376 ~--~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  453 (874)
                      .  +|+.|++++|.++ .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..+++|++
T Consensus       252 ~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  329 (606)
T 3t6q_A          252 CEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH  329 (606)
T ss_dssp             GGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred             hcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence            2  6888889998888 455555567899999999999998 56777889999999999999999888889999999999


Q ss_pred             EEccCCcCCCCCch-hhhccccCCeeecCCCcccccC--CccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCc
Q 042603          454 LYLSDNHLSGKIPR-WLGSLLALQDIIMPNNNLEGPI--PNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKN  530 (874)
Q Consensus       454 L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n  530 (874)
                      |++++|.+.+.++. .+..+++|++|++++|.+.+..  +..+..+++|++|++++|++.+..|.               
T Consensus       330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------  394 (606)
T 3t6q_A          330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE---------------  394 (606)
T ss_dssp             EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT---------------
T ss_pred             EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH---------------
Confidence            99999999866654 5899999999999999998765  66777888888888877777655444               


Q ss_pred             ccCccchhhhhcCCCCcEEEccCccCCCCCc-hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCC-
Q 042603          531 KIEGQLESIIHYYPYLVTLDLSYNRLHGSIP-NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI-  608 (874)
Q Consensus       531 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-  608 (874)
                              .+..+++|++|++++|++.+..| .++..+++|++|++++|.+.+..|..+..+++|+.|++++|++++.. 
T Consensus       395 --------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  466 (606)
T 3t6q_A          395 --------AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI  466 (606)
T ss_dssp             --------TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred             --------HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc
Confidence                    34445555566666666554443 23566666666666666666666666666777777777777765421 


Q ss_pred             C--chhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccC
Q 042603          609 P--PCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI  686 (874)
Q Consensus       609 p--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  686 (874)
                      |  ..+..                                                      +++|+.|++++|++++..
T Consensus       467 ~~~~~~~~------------------------------------------------------l~~L~~L~Ls~n~l~~~~  492 (606)
T 3t6q_A          467 QKTNSLQT------------------------------------------------------LGRLEILVLSFCDLSSID  492 (606)
T ss_dssp             CSSCGGGG------------------------------------------------------CTTCCEEECTTSCCCEEC
T ss_pred             ccchhhcc------------------------------------------------------CCCccEEECCCCccCccC
Confidence            1  11111                                                      457888889999888888


Q ss_pred             CccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCC
Q 042603          687 PTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP  759 (874)
Q Consensus       687 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  759 (874)
                      |..|+.+++|+.|+|++|++++..|+.|.++++| .||+++|++++.+|..+..+++|+.+++++|++.+..+
T Consensus       493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            8999999999999999999999999999999999 99999999999888889999999999999999987655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.3e-53  Score=497.28  Aligned_cols=539  Identities=18%  Similarity=0.200  Sum_probs=395.4

Q ss_pred             CEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcc
Q 042603           85 RILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYID  164 (874)
Q Consensus        85 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  164 (874)
                      +.++.+++.++.   +|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        14 ~~~~c~~~~l~~---ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           14 ITYQCMDQKLSK---VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TEEECTTSCCSS---CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CceEccCCCccc---CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            456666666654   233322  566666666666666666666666666666666666666556666666666666666


Q ss_pred             CCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccc
Q 042603          165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETE  244 (874)
Q Consensus       165 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~  244 (874)
                      +|.+++..|..|+++++|++|++++|.+++ ++...++++++|++|++++|.+                           
T Consensus        89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l---------------------------  140 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFI---------------------------  140 (606)
T ss_dssp             TCCCCCCCTTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCC---------------------------
T ss_pred             CCcccccChhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcc---------------------------
Confidence            666666556666666666666666666654 3322455556666665555543                           


Q ss_pred             cccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcc-cCCcchhcCCCCCCEEEccCCcccccccCCc
Q 042603          245 SHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSG-EFPNWLPENNTDLKTLLLANNSLFGSFRMPI  323 (874)
Q Consensus       245 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~  323 (874)
                                                                    .+ .+|..+ ..+++|++|++++|.+.+..+..+
T Consensus       141 ----------------------------------------------~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~  173 (606)
T 3vq2_A          141 ----------------------------------------------HSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDL  173 (606)
T ss_dssp             ----------------------------------------------CCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ----------------------------------------------cceechHhH-hhcCCCCEEEccCCcceecChhhh
Confidence                                                          22 344443 577888888888888888777777


Q ss_pred             cCCCccc----EEEccCCcCCccCChhhhcCCCCCcEEEccCCcCC-cccchhccCCCCcCEEEcccCcCCCCchhHHHh
Q 042603          324 HCLQKLA----TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFN-GSIPSSFADMKMLKSLDISYNQLTGAIPERMAM  398 (874)
Q Consensus       324 ~~l~~L~----~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~  398 (874)
                      ..+++|+    ++++++|.+. .++...+... +|++|++++|.+. +..|..+.++++|+.+++..+.+.+..      
T Consensus       174 ~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~------  245 (606)
T 3vq2_A          174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER------  245 (606)
T ss_dssp             HHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC------
T ss_pred             hhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC------
Confidence            6666554    7888888876 5565555533 7888888887775 456667777777777777655443110      


Q ss_pred             cCCCCCEEEcccCcccccCCccccCCCCCCeEEc-cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCe
Q 042603          399 GCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL-DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQD  477 (874)
Q Consensus       399 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  477 (874)
                         .+..       +....+..+..+ .++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|+.
T Consensus       246 ---~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~  311 (606)
T 3vq2_A          246 ---NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQS  311 (606)
T ss_dssp             ---CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSE
T ss_pred             ---cccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCE
Confidence               0000       001111111122 3555566 55666666665 777788888888888876 445 6777888888


Q ss_pred             eecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccc--hhhhhcCCCCcEEEccCcc
Q 042603          478 IIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL--ESIIHYYPYLVTLDLSYNR  555 (874)
Q Consensus       478 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~  555 (874)
                      |++++|.+ +.+| .+ .+++|+.|++++|+..+.. ....+++|++|++++|++++..  +..+..+++|++|++++|.
T Consensus       312 L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  387 (606)
T 3vq2_A          312 LSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG  387 (606)
T ss_dssp             EEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred             EEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence            88888888 4666 44 7888888888888665544 3445788999999999888774  7788999999999999999


Q ss_pred             CCCCCchhhcCCCCCcEEEccCccCcccCC-ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCC
Q 042603          556 LHGSIPNWIDKLPQLSYILLANNYIEGEIP-VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASA  634 (874)
Q Consensus       556 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~  634 (874)
                      +++ +|..+..+++|++|++++|++.+..| ..+..+++|+.|++++|.+++..|..+..                    
T Consensus       388 l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------  446 (606)
T 3vq2_A          388 AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--------------------  446 (606)
T ss_dssp             EEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------
T ss_pred             ccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC--------------------
Confidence            885 66788999999999999999998877 68899999999999999998777766544                    


Q ss_pred             CCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccc-cCCccccccccCCeEecCCcccccchhhh
Q 042603          635 PALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIRALNLSHNNLTGTIPTT  713 (874)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  713 (874)
                                                        +++|+.|++++|.+++ .+|..++.+++|++|+|++|++++..|..
T Consensus       447 ----------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  492 (606)
T 3vq2_A          447 ----------------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV  492 (606)
T ss_dssp             ----------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             ----------------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence                                              3489999999999998 47999999999999999999999999999


Q ss_pred             ccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCC-CCCcccccCCCCCCCCCCC
Q 042603          714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFLCGLPLS  785 (874)
Q Consensus       714 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~-~l~~~~~~gNp~~C~~~l~  785 (874)
                      |+++++|++|+|++|++++.+|..+..+++|+.|++++|++++ +|..+..++ +++.+++.|||+.|+|++.
T Consensus       493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            9999999999999999999999999999999999999999995 455478886 5999999999999987753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.3e-52  Score=485.78  Aligned_cols=531  Identities=19%  Similarity=0.160  Sum_probs=341.8

Q ss_pred             CcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCC
Q 042603           57 LEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQ  135 (874)
Q Consensus        57 L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  135 (874)
                      -++++++++.+. +|..       -.+++++|++++|.++..  .+..|.++++|++|++++|.+++..|.+|.++++|+
T Consensus        13 ~~~~~c~~~~l~~ip~~-------~~~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~   83 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDD-------IPSSTKNIDLSFNPLKIL--KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS   83 (606)
T ss_dssp             TTEEECTTSCCSSCCTT-------SCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCceEccCCCcccCCCC-------CCCCcCEEECCCCCcCEe--ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence            467899888877 5654       348999999999999863  346899999999999999999998899999999999


Q ss_pred             EEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccc-cCCccccCCCCCCCEEEccc
Q 042603          136 VLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSSPLMHLTSIEELILSN  214 (874)
Q Consensus       136 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~l~~  214 (874)
                      +|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .++++++|++|++++
T Consensus        84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A           84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSY  162 (606)
T ss_dssp             EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCS
T ss_pred             EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccC
Confidence            99999999998889999999999999999999998887889999999999999999986 4566 799999999999999


Q ss_pred             cccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCC----CCEEEcCCCCC
Q 042603          215 NHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHD----LNNADLSHLNL  290 (874)
Q Consensus       215 n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~----L~~L~l~~n~l  290 (874)
                      |.+.+..+                                                 ..++.+.+    +..+++++|.+
T Consensus       163 n~l~~~~~-------------------------------------------------~~~~~l~~L~~~l~~L~l~~n~l  193 (606)
T 3vq2_A          163 NYIQTITV-------------------------------------------------NDLQFLRENPQVNLSLDMSLNPI  193 (606)
T ss_dssp             SCCCEECT-------------------------------------------------TTTHHHHHCTTCCCEEECTTCCC
T ss_pred             CcceecCh-------------------------------------------------hhhhhhhccccccceeeccCCCc
Confidence            97763211                                                 11111111    33556666655


Q ss_pred             cccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCc----
Q 042603          291 SGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG----  366 (874)
Q Consensus       291 ~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~----  366 (874)
                      .                         +..+..+... +|++|++++|.+.+......+..+++++.+++..+.+.+    
T Consensus       194 ~-------------------------~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l  247 (606)
T 3vq2_A          194 D-------------------------FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL  247 (606)
T ss_dssp             C-------------------------EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             c-------------------------eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence            5                         3333333222 455555555544322222223334455555443332221    


Q ss_pred             --ccchhccCCC--CcCEEEc-ccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccC
Q 042603          367 --SIPSSFADMK--MLKSLDI-SYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEI  441 (874)
Q Consensus       367 --~~~~~~~~l~--~L~~L~l-~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  441 (874)
                        ..+..+..+.  .++.+++ ..|.+.+.+|.  +..+++|+.|++++|.+... + .+..+++|++|++++|++ +.+
T Consensus       248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~l  322 (606)
T 3vq2_A          248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQF  322 (606)
T ss_dssp             SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC-SSC
T ss_pred             cccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC-ccc
Confidence              1111111111  2334444 44444444443  23344555555555554332 2 344455555555555555 344


Q ss_pred             CccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccccc--CCccccCCCCCCEEECcCCcCcccCCCCCCC
Q 042603          442 PESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGP--IPNEFCQLDCLKVLDLSNNSIFGTLPSCLSL  519 (874)
Q Consensus       442 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  519 (874)
                      | .+ .+++|++|++++|...+..  .+..+++|+.|++++|.+++.  .+..+..+++|++|++++|.+.         
T Consensus       323 p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~---------  389 (606)
T 3vq2_A          323 P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI---------  389 (606)
T ss_dssp             C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE---------
T ss_pred             c-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc---------
Confidence            4 22 4555555555555332222  334455555555555555433  2444455555555555555544         


Q ss_pred             CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCc-hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEE
Q 042603          520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP-NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLID  598 (874)
Q Consensus       520 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  598 (874)
                                    +.. ..+..+++|++|++++|++.+..| ..+..+++|++|++++|++.+..|..+..+++|+.|+
T Consensus       390 --------------~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          390 --------------IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             --------------EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             --------------cch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence                          322 334455555566666665555544 4555666666666666666655666666666666666


Q ss_pred             ccCCcCCCC-CCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEc
Q 042603          599 LSHNNLSGH-IPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDL  677 (874)
Q Consensus       599 Ls~N~l~~~-~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  677 (874)
                      +++|++++. +|..+..                                                      +++|+.|++
T Consensus       455 l~~n~l~~~~~~~~~~~------------------------------------------------------l~~L~~L~L  480 (606)
T 3vq2_A          455 MAGNSFKDNTLSNVFAN------------------------------------------------------TTNLTFLDL  480 (606)
T ss_dssp             CTTCEEGGGEECSCCTT------------------------------------------------------CTTCCEEEC
T ss_pred             CCCCcCCCcchHHhhcc------------------------------------------------------CCCCCEEEC
Confidence            666666542 3333222                                                      246777777


Q ss_pred             CCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCC-CCCeEEccCCCCcc
Q 042603          678 SCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN-TLAVFRVAYNNLSG  756 (874)
Q Consensus       678 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~l~ls~N~l~~  756 (874)
                      ++|++++..|..++.+++|++|+|++|++++.+|..|+++++|++|||++|+++ .+|+.+..++ +|+.+++++|++.+
T Consensus       481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence            777777777888888888888888888888888888888888999999999888 5666688886 58899999998887


Q ss_pred             cCCC
Q 042603          757 KIPD  760 (874)
Q Consensus       757 ~~p~  760 (874)
                      ..+.
T Consensus       560 ~c~~  563 (606)
T 3vq2_A          560 ICEH  563 (606)
T ss_dssp             SSTT
T ss_pred             CCcc
Confidence            6553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.1e-52  Score=500.76  Aligned_cols=557  Identities=21%  Similarity=0.176  Sum_probs=386.3

Q ss_pred             cEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcc-hhcccCCCCCC
Q 042603           58 EHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSL-LWCLANMTSLQ  135 (874)
Q Consensus        58 ~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~  135 (874)
                      +..+.+++.+. +|.        ..++|++|+|++|.++..  .+..|.++++|++|++++|...+.+ |.+|.++++|+
T Consensus         7 ~~~dcs~~~L~~vP~--------lp~~l~~LdLs~N~i~~i--~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~   76 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--------VLNTTERLLLSFNYIRTV--TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR   76 (844)
T ss_dssp             EEEEESCCCSSCCCS--------SCTTCCEEEEESCCCCEE--CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred             eEEEccCCCCCCCCC--------CCCCcCEEECCCCcCCcc--ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence            35666666665 442        468999999999999864  4578999999999999999666555 78999999999


Q ss_pred             EEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccc--ccCCCCCCEEEcccccccccCCccccCCCCCCCEEEcc
Q 042603          136 VLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLC--LANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILS  213 (874)
Q Consensus       136 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  213 (874)
                      +|+|++|.+.+..|..|.++++|++|++++|.+++..|..  |+++++|++|+|++|.+++..+...++++++|++|+++
T Consensus        77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A           77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS  156 (844)
T ss_dssp             EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred             EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence            9999999999989999999999999999999999866654  99999999999999999875554478999999999999


Q ss_pred             ccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCC--CCCCEEEcCCCCCc
Q 042603          214 NNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ--HDLNNADLSHLNLS  291 (874)
Q Consensus       214 ~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~n~l~  291 (874)
                      +|.+.+.                                                 .+..+..+  ++|+.++++.|.+.
T Consensus       157 ~N~i~~~-------------------------------------------------~~~~l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          157 SNQIFLV-------------------------------------------------CEHELEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             SSCCCCC-------------------------------------------------CSGGGHHHHHCSSCCCEECCSBSC
T ss_pred             CCcCCee-------------------------------------------------CHHHcccccCCccceEECCCCccc
Confidence            9877532                                                 22333333  68999999999999


Q ss_pred             ccCCcchhcCCCC------CCEEEccCCcccccccCCccC---CCcccEEEccCCcCCcc--------CChhhhcC--CC
Q 042603          292 GEFPNWLPENNTD------LKTLLLANNSLFGSFRMPIHC---LQKLATLDVSNNFFLGH--------IPVEIGTY--LP  352 (874)
Q Consensus       292 ~~~p~~l~~~l~~------L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~Ls~n~l~~~--------i~~~~~~~--l~  352 (874)
                      +..|..+ ..+++      |++|++++|.+.+..+..+..   ..+++.++++.+.+...        .....+..  .+
T Consensus       188 ~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~  266 (844)
T 3j0a_A          188 SRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS  266 (844)
T ss_dssp             CCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred             cccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence            8777654 34443      999999999988776655543   35788888875433211        11111111  13


Q ss_pred             CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603          353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL  432 (874)
Q Consensus       353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  432 (874)
                      +|++|++++|.+.+..|..|..+++|+.|++++|+++                         +..+..+..+++|++|++
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-------------------------~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-------------------------KIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-------------------------EECTTTTTTCSSCCEEEE
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-------------------------CCChHHhcCCCCCCEEEC
Confidence            5556666666555555555555555555555555555                         333344444444444444


Q ss_pred             cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 042603          433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT  512 (874)
Q Consensus       433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  512 (874)
                      ++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++.     ..+++|+.|++++|+++ .
T Consensus       322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~  395 (844)
T 3j0a_A          322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-T  395 (844)
T ss_dssp             ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-C
T ss_pred             CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-c
Confidence            44444444444444444455555555544444444445555555555555554421     12556666777777665 3


Q ss_pred             CCCCCCCCcccEEEeeCcccCccch-hhhhcCCCCcEEEccCccCCCCCch-hhcCCCCCcEEEccCccCcccCCccccC
Q 042603          513 LPSCLSLGSIEQVHLSKNKIEGQLE-SIIHYYPYLVTLDLSYNRLHGSIPN-WIDKLPQLSYILLANNYIEGEIPVQLCQ  590 (874)
Q Consensus       513 ~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~  590 (874)
                      +|..  ..+++.|++++|++++... ..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+.+..+..+  
T Consensus       396 l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~--  471 (844)
T 3j0a_A          396 LPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL--  471 (844)
T ss_dssp             CCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC--
T ss_pred             cccc--ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccccc--
Confidence            3332  3467778888888777543 3456889999999999999865443 45568899999999998874322111  


Q ss_pred             CCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc
Q 042603          591 LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT  670 (874)
Q Consensus       591 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (874)
                                       .|..+.                                                      .++
T Consensus       472 -----------------~~~~~~------------------------------------------------------~l~  480 (844)
T 3j0a_A          472 -----------------CWDVFE------------------------------------------------------GLS  480 (844)
T ss_dssp             -----------------CSSCSS------------------------------------------------------CBC
T ss_pred             -----------------chhhhc------------------------------------------------------Ccc
Confidence                             111111                                                      134


Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      +|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+.  ++|+.|||++|++++.+|..+   .+|+.++++
T Consensus       481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~  555 (844)
T 3j0a_A          481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDIT  555 (844)
T ss_dssp             CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEE
T ss_pred             cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEec
Confidence            778888999999988888899999999999999999988777776  899999999999999988765   478899999


Q ss_pred             CCCCcccCCCccccCCCCCcccccCCCCCCCCCCCCCCCC
Q 042603          751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDD  790 (874)
Q Consensus       751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l~~~c~~  790 (874)
                      +|++.+..+.     ..|......+|..+||.+....|..
T Consensus       556 ~Np~~C~c~~-----~~f~~~~~~~~~~~~~~~~~~~C~~  590 (844)
T 3j0a_A          556 HNKFICECEL-----STFINWLNHTNVTIAGPPADIYCVY  590 (844)
T ss_dssp             EECCCCSSSC-----CSHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred             CCCccccccc-----HHHHHHHHhcCcccccccccCccCC
Confidence            9998875542     1111111234566677666667753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4e-47  Score=441.56  Aligned_cols=272  Identities=20%  Similarity=0.246  Sum_probs=172.3

Q ss_pred             CCeEEccCC-cCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeC
Q 042603          451 LGGLYLSDN-HLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSK  529 (874)
Q Consensus       451 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~  529 (874)
                      ++.++++++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|++. .+|. ..+++|+.|++++
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~  334 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTS  334 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEES
T ss_pred             hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcC
Confidence            344444444 444455555555566666666666555 345555555 6666666666655 3333 2355666666666


Q ss_pred             cccCccchhhhhcCCCCcEEEccCccCCCCC--chhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCC
Q 042603          530 NKIEGQLESIIHYYPYLVTLDLSYNRLHGSI--PNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGH  607 (874)
Q Consensus       530 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  607 (874)
                      |.+.+..+.  ..+++|++|++++|++++..  |..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+++.
T Consensus       335 n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred             Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence            665554443  45666666666666666443  55666666777777777766644333 66667777777777766543


Q ss_pred             CCc-hhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccC
Q 042603          608 IPP-CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI  686 (874)
Q Consensus       608 ~p~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  686 (874)
                      .|. .+..                                                      +++|+.|++++|.+++..
T Consensus       412 ~~~~~~~~------------------------------------------------------l~~L~~L~l~~n~l~~~~  437 (570)
T 2z63_A          412 SEFSVFLS------------------------------------------------------LRNLIYLDISHTHTRVAF  437 (570)
T ss_dssp             TTSCTTTT------------------------------------------------------CTTCCEEECTTSCCEECC
T ss_pred             cchhhhhc------------------------------------------------------CCCCCEEeCcCCcccccc
Confidence            331 1111                                                      346677777777777667


Q ss_pred             CccccccccCCeEecCCcccc-cchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccC
Q 042603          687 PTQIGYLTRIRALNLSHNNLT-GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQF  765 (874)
Q Consensus       687 p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~  765 (874)
                      |..+..+++|++|+|++|+++ +.+|..++.+++|++||+++|++++..|..+..+++|+.|++++|++++.+|..+..+
T Consensus       438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  517 (570)
T 2z63_A          438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL  517 (570)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence            777777777777777777776 4667777777777777777777777777777777777777777777777777666777


Q ss_pred             CCCCcccccCCCCCCCCC
Q 042603          766 STFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       766 ~~l~~~~~~gNp~~C~~~  783 (874)
                      ++++.+++.+||+.|+||
T Consensus       518 ~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          518 TSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TTCCEEECCSSCBCCCTT
T ss_pred             cCCcEEEecCCcccCCCc
Confidence            777777777777777554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-47  Score=441.89  Aligned_cols=509  Identities=19%  Similarity=0.200  Sum_probs=405.1

Q ss_pred             cEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccc
Q 042603          111 QELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYN  190 (874)
Q Consensus       111 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  190 (874)
                      +.++.++.+++. +|..+.  +++++|++++|.+++..+..|.++++|++|++++|++++..+..|+++++|++|++++|
T Consensus        10 ~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A           10 ITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             TEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             cEEEeCCCCccc-cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence            445566555553 333332  46777777777777666667777777777777777777666667777777777777777


Q ss_pred             cccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCC
Q 042603          191 QLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTF  270 (874)
Q Consensus       191 ~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  270 (874)
                      ++++ ++...+.++++|++|++++|.+..                                                   
T Consensus        87 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~---------------------------------------------------  114 (570)
T 2z63_A           87 PIQS-LALGAFSGLSSLQKLVAVETNLAS---------------------------------------------------  114 (570)
T ss_dssp             CCCE-ECTTTTTTCTTCCEEECTTSCCCC---------------------------------------------------
T ss_pred             cCCc-cCHhhhcCcccccccccccccccc---------------------------------------------------
Confidence            7765 343366667777777766665431                                                   


Q ss_pred             ChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCccccc-ccCCccCCCcccEEEccCCcCCccCChhhhc
Q 042603          271 PKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGS-FRMPIHCLQKLATLDVSNNFFLGHIPVEIGT  349 (874)
Q Consensus       271 ~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~  349 (874)
                                             ++...++.+++|++|++++|.+.+. .|..+.++++|++|++++|.+.+..+..+ .
T Consensus       115 -----------------------l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~  170 (570)
T 2z63_A          115 -----------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-R  170 (570)
T ss_dssp             -----------------------STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-H
T ss_pred             -----------------------CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-c
Confidence                                   2221135788999999999999874 58889999999999999999985444433 3


Q ss_pred             CCCCC----cEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCccc------ccCCc
Q 042603          350 YLPGL----MHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ------GHIFS  419 (874)
Q Consensus       350 ~l~~L----~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~------~~~~~  419 (874)
                      .+++|    ++|++++|.+.+..|..|... +|+.|++++|............+++.++...+....+.      .....
T Consensus       171 ~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~  249 (570)
T 2z63_A          171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS  249 (570)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTT
T ss_pred             chhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchh
Confidence            36677    899999999998888888766 89999999986554333344456788887766543322      22223


Q ss_pred             cccCCC--CCCeEEccCC-cCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCC
Q 042603          420 EKFNLT--NLKRLQLDGN-KFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQL  496 (874)
Q Consensus       420 ~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  496 (874)
                      .+..++  .++.+++.++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .+|.  ..+
T Consensus       250 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l  324 (570)
T 2z63_A          250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKL  324 (570)
T ss_dssp             TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBC
T ss_pred             hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccc
Confidence            333333  3566777777 677788899999999999999999998 578888888 9999999999998 4554  478


Q ss_pred             CCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccc--hhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEE
Q 042603          497 DCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL--ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL  574 (874)
Q Consensus       497 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  574 (874)
                      ++|+.|++++|.+.+..+. ..+++|++|++++|++++..  +..+..+++|++|++++|.+.+..+. +..+++|++|+
T Consensus       325 ~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~  402 (570)
T 2z63_A          325 KSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD  402 (570)
T ss_dssp             SSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred             cccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEE
Confidence            8999999999999876665 56899999999999999875  77899999999999999999965554 89999999999


Q ss_pred             ccCccCcccCC-ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceE
Q 042603          575 LANNYIEGEIP-VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV  653 (874)
Q Consensus       575 l~~n~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (874)
                      +++|.+.+..+ ..+..+++|+.|++++|.+++..|..+..                                       
T Consensus       403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------  443 (570)
T 2z63_A          403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---------------------------------------  443 (570)
T ss_dssp             CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT---------------------------------------
T ss_pred             ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc---------------------------------------
Confidence            99999998766 57899999999999999998776655443                                       


Q ss_pred             EEEecCcccccccccccCcceEEcCCCccc-ccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc
Q 042603          654 QFTTKNMSYYYRGRILTSMSGIDLSCNKLT-GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  732 (874)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  732 (874)
                                     +++|+.|++++|.++ +.+|..++.+++|++|+|++|++++..|..|+++++|++|++++|++++
T Consensus       444 ---------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  508 (570)
T 2z63_A          444 ---------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS  508 (570)
T ss_dssp             ---------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ---------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence                           358999999999998 6799999999999999999999999999999999999999999999999


Q ss_pred             cCChhhhcCCCCCeEEccCCCCcccCCC
Q 042603          733 KIPPQLIVLNTLAVFRVAYNNLSGKIPD  760 (874)
Q Consensus       733 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~  760 (874)
                      .+|..+..+++|+.|++++|++++..|.
T Consensus       509 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          509 VPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9888999999999999999999998886

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.7e-47  Score=437.83  Aligned_cols=488  Identities=20%  Similarity=0.193  Sum_probs=325.3

Q ss_pred             EEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEccccc
Q 042603          112 ELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ  191 (874)
Q Consensus       112 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  191 (874)
                      ..+.+++.++.+ |..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++|+
T Consensus         9 ~c~~~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A            9 VCDGRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EEECTTSCCSSC-CSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             eEECCCCccccc-cccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            345555555532 32222  456666666666665555556666666666666666665555556666666666666666


Q ss_pred             ccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCC
Q 042603          192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFP  271 (874)
Q Consensus       192 l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  271 (874)
                      +++ ++...++++++|++|++++|.+.                                                     
T Consensus        86 l~~-~~~~~~~~l~~L~~L~Ls~n~l~-----------------------------------------------------  111 (549)
T 2z81_A           86 LSS-LSSSWFGPLSSLKYLNLMGNPYQ-----------------------------------------------------  111 (549)
T ss_dssp             CCS-CCHHHHTTCTTCCEEECTTCCCS-----------------------------------------------------
T ss_pred             cCc-cCHHHhccCCCCcEEECCCCccc-----------------------------------------------------
Confidence            554 33324555555555555554432                                                     


Q ss_pred             hhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCC
Q 042603          272 KFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYL  351 (874)
Q Consensus       272 ~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l  351 (874)
                                          +.                        ..+..+..+++|++|++++|.+.+.+|...+..+
T Consensus       112 --------------------~~------------------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l  147 (549)
T 2z81_A          112 --------------------TL------------------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL  147 (549)
T ss_dssp             --------------------SS------------------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             --------------------cc------------------------chhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence                                10                        0112233445555666666654445554444556


Q ss_pred             CCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCC---ccccCCCCCC
Q 042603          352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF---SEKFNLTNLK  428 (874)
Q Consensus       352 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~  428 (874)
                      ++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..++..+++|++|++++|.+++...   .....+++|+
T Consensus       148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~  226 (549)
T 2z81_A          148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK  226 (549)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred             cccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence            77777777777777777777888888888888888776 6676666667788888888888776421   1223456777


Q ss_pred             eEEccCCcCcccCCc----cccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEEC
Q 042603          429 RLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL  504 (874)
Q Consensus       429 ~L~L~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  504 (874)
                      .|++++|.+++..+.    .+..+++|+.+++++|.+.+...     ++.             .....+..+++++.|++
T Consensus       227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-----~~~-------------~~~~~~~~l~~L~~L~l  288 (549)
T 2z81_A          227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-----FNP-------------SESDVVSELGKVETVTI  288 (549)
T ss_dssp             EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-----CCC-------------CTTTCCCCCTTCCEEEE
T ss_pred             ceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-----ccc-------------cchhhhhhhcccccccc
Confidence            777777776543332    23445566666666665543210     000             01122345566777777


Q ss_pred             cCCcCcccC-----CCCC-CCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCch---hhcCCCCCcEEEc
Q 042603          505 SNNSIFGTL-----PSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN---WIDKLPQLSYILL  575 (874)
Q Consensus       505 ~~n~l~~~~-----~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~l  575 (874)
                      +++.+....     +... ..++|+.|++++|+++.++...+..+++|++|++++|++++..|.   +++.+++|++|++
T Consensus       289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L  368 (549)
T 2z81_A          289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL  368 (549)
T ss_dssp             ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred             cccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence            776654221     1101 146788999999988877666667889999999999998876643   3678899999999


Q ss_pred             cCccCcccCC--ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceE
Q 042603          576 ANNYIEGEIP--VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV  653 (874)
Q Consensus       576 ~~n~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (874)
                      ++|++++..+  ..+..+++|+.||+++|+++ .+|..+..                                       
T Consensus       369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------------  408 (549)
T 2z81_A          369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW---------------------------------------  408 (549)
T ss_dssp             TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC---------------------------------------
T ss_pred             cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc---------------------------------------
Confidence            9999886533  45788899999999999887 55554322                                       


Q ss_pred             EEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCccc
Q 042603          654 QFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK  733 (874)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~  733 (874)
                                     +++|+.|++++|+++ .+|..+.  ++|++|+|++|++++.+    ..+++|++|||++|+|+ .
T Consensus       409 ---------------~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~  465 (549)
T 2z81_A          409 ---------------PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-T  465 (549)
T ss_dssp             ---------------CTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-S
T ss_pred             ---------------cccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-c
Confidence                           348889999999988 4554443  68999999999998753    57889999999999998 5


Q ss_pred             CChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          734 IPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       734 ~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      +|+ ...+++|++|++++|++++.+|..+..+++++.+++.+|||.|+||
T Consensus       466 ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          466 LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            665 4788999999999999999998888899999999999999999776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.9e-46  Score=428.75  Aligned_cols=496  Identities=19%  Similarity=0.185  Sum_probs=315.7

Q ss_pred             CCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCE
Q 042603           81 MASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRE  160 (874)
Q Consensus        81 l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  160 (874)
                      |+...+.+.+++.++.   +|..+.  ++|++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++
T Consensus         4 C~~~~~c~~~~~~l~~---ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   78 (549)
T 2z81_A            4 CDASGVCDGRSRSFTS---IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH   78 (549)
T ss_dssp             ECTTSEEECTTSCCSS---CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCceEECCCCcccc---ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence            3444456777777765   344443  78999999999998888888999999999999999999888888999999999


Q ss_pred             EEccCCcCCCCccccccCCCCCCEEEcccccccc-cCCccccCCCCCCCEEEccccccccccCcccccCCCCCceecccc
Q 042603          161 LYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEI  239 (874)
Q Consensus       161 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~  239 (874)
                      |++++|++++..|..|+++++|++|++++|.+++ .++. .+.++++|++|++++|.+.+.                   
T Consensus        79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~-------------------  138 (549)
T 2z81_A           79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSE-------------------  138 (549)
T ss_dssp             EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCE-------------------
T ss_pred             EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccc-------------------
Confidence            9999999998877789999999999999999875 2333 678888888888887753221                   


Q ss_pred             ccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccc
Q 042603          240 YAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSF  319 (874)
Q Consensus       240 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~  319 (874)
                                                                            +|...+..+++|++|++++|.+.+..
T Consensus       139 ------------------------------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~  164 (549)
T 2z81_A          139 ------------------------------------------------------IRRIDFAGLTSLNELEIKALSLRNYQ  164 (549)
T ss_dssp             ------------------------------------------------------ECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             ------------------------------------------------------cCHhhhhcccccCeeeccCCcccccC
Confidence                                                                  11111234455666666666666666


Q ss_pred             cCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCccc--c-hhccCCCCcCEEEcccCcCCCCchhHH
Q 042603          320 RMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSI--P-SSFADMKMLKSLDISYNQLTGAIPERM  396 (874)
Q Consensus       320 ~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~~~l~~L~~L~l~~n~i~~~~~~~~  396 (874)
                      +..+..+++|++|++++|.+. .+|...+..+++|++|++++|.+++..  | .....+++|+.|++++|.+++..+..+
T Consensus       165 ~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  243 (549)
T 2z81_A          165 SQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL  243 (549)
T ss_dssp             TTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred             hhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence            666777778888888888765 666666666788888888888887542  1 223457788888888888876555444


Q ss_pred             H---hcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCC-----CCchh
Q 042603          397 A---MGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG-----KIPRW  468 (874)
Q Consensus       397 ~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~  468 (874)
                      .   ..+++|+.+++++|.+.+......                  .....+..+.+++.|++.++.+..     .++..
T Consensus       244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~  305 (549)
T 2z81_A          244 LKLLRYILELSEVEFDDCTLNGLGDFNP------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV  305 (549)
T ss_dssp             HGGGGGCTTCCEEEEESCEEECCSCCCC------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred             HHHhhhhccccccccccccccccccccc------------------cchhhhhhhcccccccccccccchhhhcccchhh
Confidence            3   235667777777776654211000                  001122334455555555554432     11222


Q ss_pred             hhccccCCeeecCCCcccccCCccc-cCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCc
Q 042603          469 LGSLLALQDIIMPNNNLEGPIPNEF-CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLV  547 (874)
Q Consensus       469 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  547 (874)
                      +...++|+.|++++|.+. .+|..+ ..+++|++|++++|++.+.+|..                    +..+..+++|+
T Consensus       306 ~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------------~~~~~~l~~L~  364 (549)
T 2z81_A          306 YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN--------------------SACKGAWPSLQ  364 (549)
T ss_dssp             HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHH--------------------HTCTTSSTTCC
T ss_pred             hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccc--------------------hhhhhccccCc
Confidence            233344555555555544 233332 34555555555555554432110                    11133444555


Q ss_pred             EEEccCccCCCCCc--hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCC
Q 042603          548 TLDLSYNRLHGSIP--NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAV  625 (874)
Q Consensus       548 ~L~Ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~  625 (874)
                      +|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+             
T Consensus       365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~-------------  429 (549)
T 2z81_A          365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI-------------  429 (549)
T ss_dssp             EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS-------------
T ss_pred             EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh-------------
Confidence            55555555543221  23455555555555555555 34555555666666666666654 122110             


Q ss_pred             CCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcc
Q 042603          626 APTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN  705 (874)
Q Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  705 (874)
                                                                 .++|+.|++++|++++.+    +.+++|++|+|++|+
T Consensus       430 -------------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~  462 (549)
T 2z81_A          430 -------------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNK  462 (549)
T ss_dssp             -------------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSC
T ss_pred             -------------------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCc
Confidence                                                       135667777777777542    456778888888888


Q ss_pred             cccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCC
Q 042603          706 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP  759 (874)
Q Consensus       706 l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  759 (874)
                      ++ .+|. ...+++|++|||++|++++.+|..+..+++|+.|++++|++.+..|
T Consensus       463 l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          463 LK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            87 4554 4567788888888888887777778888888888888888877666

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.9e-45  Score=432.78  Aligned_cols=447  Identities=22%  Similarity=0.272  Sum_probs=252.0

Q ss_pred             ceeeEEEccCCCCCCCCChhccCCCCCCEEEc-CCCCCcccCCcchhc--------------------------------
Q 042603          254 FQLTSISLSGYGDGGTFPKFLYHQHDLNNADL-SHLNLSGEFPNWLPE--------------------------------  300 (874)
Q Consensus       254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l-~~n~l~~~~p~~l~~--------------------------------  300 (874)
                      .+++.|+|+++++.|.+|..+++++.|+.|++ ++|.+.|..|.....                                
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            36888889888888888888888999999999 777776653322100                                


Q ss_pred             ------------------CCCCCCEEEcc--CCcccccccCCccCCCcccEEEccCCcCCc-----------------cC
Q 042603          301 ------------------NNTDLKTLLLA--NNSLFGSFRMPIHCLQKLATLDVSNNFFLG-----------------HI  343 (874)
Q Consensus       301 ------------------~l~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~i  343 (874)
                                        ....++.+.+.  .|.+.+ +|..+..+++|++|+|++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                              00112222222  244444 44455555556666666655554                 14


Q ss_pred             Chhhh-cCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCc-CCC-CchhHHHhcCCCCCEEEcccCcccccCCcc
Q 042603          344 PVEIG-TYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ-LTG-AIPERMAMGCFSLEILALSNNTLQGHIFSE  420 (874)
Q Consensus       344 ~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  420 (874)
                      |..+. ..+++|++|++++|.+.+.+|..|.++++|++|++++|+ +++ .+|..+.. ++                 ..
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~-----------------~~  543 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LA-----------------DD  543 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HH-----------------HC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hh-----------------hc
Confidence            54442 224555555555555555555555555555555555555 554 44443321 11                 01


Q ss_pred             ccCCCCCCeEEccCCcCcccCCc--cccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCC
Q 042603          421 KFNLTNLKRLQLDGNKFIGEIPE--SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC  498 (874)
Q Consensus       421 ~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  498 (874)
                      +..+++|+.|++++|+++ .+|.  .+..+++|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++
T Consensus       544 ~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~  619 (876)
T 4ecn_A          544 EDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD  619 (876)
T ss_dssp             TTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECT
T ss_pred             ccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccc
Confidence            112224444444444444 3444  4444444444444444444 344 4444444555555554444 34444444444


Q ss_pred             -CCEEECcCCcCcccCCCCCC-C--CcccEEEeeCcccCccchhhh---h--cCCCCcEEEccCccCCCCCchh-hcCCC
Q 042603          499 -LKVLDLSNNSIFGTLPSCLS-L--GSIEQVHLSKNKIEGQLESII---H--YYPYLVTLDLSYNRLHGSIPNW-IDKLP  568 (874)
Q Consensus       499 -L~~L~L~~n~l~~~~~~~~~-~--~~L~~L~l~~n~i~~~~~~~~---~--~l~~L~~L~Ls~n~l~~~~~~~-~~~l~  568 (874)
                       |+.|++++|++. .+|..+. .  ++|+.|++++|++++.+|...   .  .+++|+.|++++|+++. +|.. +..++
T Consensus       620 ~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~  697 (876)
T 4ecn_A          620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGS  697 (876)
T ss_dssp             TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTC
T ss_pred             cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCC
Confidence             555555555544 3333332 1  225555555555544333211   1  22355555555555552 3332 33555


Q ss_pred             CCcEEEccCccCcccCCccccC--------CCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccC
Q 042603          569 QLSYILLANNYIEGEIPVQLCQ--------LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYF  640 (874)
Q Consensus       569 ~L~~L~l~~n~~~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (874)
                      +|+.|++++|++. .+|..+..        +++|+.|+|++|+++ .+|..+...                         
T Consensus       698 ~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~-------------------------  750 (876)
T 4ecn_A          698 PISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT-------------------------  750 (876)
T ss_dssp             CCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT-------------------------
T ss_pred             CCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc-------------------------
Confidence            5555555555555 33332222        226777777777776 555544300                         


Q ss_pred             CCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCC------cccccchhhhc
Q 042603          641 PPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH------NNLTGTIPTTF  714 (874)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~  714 (874)
                                                 .+++|+.|+|++|++++ +|..++.+++|+.|+|++      |++.+.+|..|
T Consensus       751 ---------------------------~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l  802 (876)
T 4ecn_A          751 ---------------------------TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI  802 (876)
T ss_dssp             ---------------------------TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred             ---------------------------cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence                                       03467777777777775 677777777777777765      88888899999


Q ss_pred             cCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCC--CCC
Q 042603          715 SNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC--GLP  783 (874)
Q Consensus       715 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C--~~~  783 (874)
                      .++++|+.|+|++|++ +.+|..+.  ++|+.|++++|++....+..+..........+.+|++.|  |||
T Consensus       803 ~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          803 TTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             GGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred             hcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence            9999999999999999 67887755  689999999999887766655554455566677777665  554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.3e-44  Score=426.75  Aligned_cols=519  Identities=20%  Similarity=0.203  Sum_probs=349.1

Q ss_pred             CCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcc
Q 042603          109 HLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVS  188 (874)
Q Consensus       109 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  188 (874)
                      ++++|+|++|+|+++.+.+|.++++|++|+|++|.|++..|.+|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            56666666666665555566666666666666666665555556666666666666666665555556666666666666


Q ss_pred             cccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCC
Q 042603          189 YNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGG  268 (874)
Q Consensus       189 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  268 (874)
                      +|++++ ++...|+++++|++|++++|.+..                                                 
T Consensus       133 ~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~-------------------------------------------------  162 (635)
T 4g8a_A          133 ETNLAS-LENFPIGHLKTLKELNVAHNLIQS-------------------------------------------------  162 (635)
T ss_dssp             TSCCCC-STTCCCTTCTTCCEEECCSSCCCC-------------------------------------------------
T ss_pred             CCcCCC-CChhhhhcCcccCeeccccCcccc-------------------------------------------------
Confidence            666654 443345555555555555554321                                                 


Q ss_pred             CCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhh
Q 042603          269 TFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIG  348 (874)
Q Consensus       269 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~  348 (874)
                                             ...|.. +..+++|++|++++|++.+..+..+..+.+++                  
T Consensus       163 -----------------------~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~------------------  200 (635)
T 4g8a_A          163 -----------------------FKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP------------------  200 (635)
T ss_dssp             -----------------------CCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCT------------------
T ss_pred             -----------------------CCCchh-hccchhhhhhcccCccccccccccccchhhhh------------------
Confidence                                   012222 24566677777777776665554443332221                  


Q ss_pred             cCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCc------ccccCCcccc
Q 042603          349 TYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNT------LQGHIFSEKF  422 (874)
Q Consensus       349 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~------l~~~~~~~~~  422 (874)
                         .....++++.|.+....+..+ ....++.+++++|.....++...+.++..++...+..+.      +.......+.
T Consensus       201 ---~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~  276 (635)
T 4g8a_A          201 ---LLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE  276 (635)
T ss_dssp             ---TCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred             ---hhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence               122344445554443333222 223344455555544433333334444555444443222      1122222333


Q ss_pred             CCCCCCeEEccCCcCc---ccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCC
Q 042603          423 NLTNLKRLQLDGNKFI---GEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCL  499 (874)
Q Consensus       423 ~l~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  499 (874)
                      ....++...+..+...   ...+..+..+.+++.+.+.++.+...  ..+.....++.|++.+|.+.+..+.   .+..|
T Consensus       277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L  351 (635)
T 4g8a_A          277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSL  351 (635)
T ss_dssp             GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTC
T ss_pred             cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhh
Confidence            3444444444333221   12334456667788888888877633  2355667888888888888755443   45678


Q ss_pred             CEEECcCCcCcccCCCCCCCCcccEEEeeCcccCc--cchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccC
Q 042603          500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEG--QLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN  577 (874)
Q Consensus       500 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  577 (874)
                      +.+++.+|.+.. .+....+++|+.+++++|.+..  ..+..+..+.+|+.++++.|.+.. .+..+..+++|+.+++.+
T Consensus       352 ~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~  429 (635)
T 4g8a_A          352 KRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH  429 (635)
T ss_dssp             CEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred             hhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhh
Confidence            888888888763 4445568889999999998764  345667788999999999998874 455678899999999998


Q ss_pred             ccCcccCC-ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEE
Q 042603          578 NYIEGEIP-VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFT  656 (874)
Q Consensus       578 n~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (874)
                      +......+ ..+..+++++.++++.|.+.+..|..+..                                          
T Consensus       430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~------------------------------------------  467 (635)
T 4g8a_A          430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------------------------  467 (635)
T ss_dssp             SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccc------------------------------------------
Confidence            88766554 46788999999999999998655544332                                          


Q ss_pred             ecCcccccccccccCcceEEcCCCcc-cccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCC
Q 042603          657 TKNMSYYYRGRILTSMSGIDLSCNKL-TGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP  735 (874)
Q Consensus       657 ~~~~~~~~~~~~~~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  735 (874)
                                  ++.++.|++++|.+ .+.+|..|..+++|++|||++|++++.+|..|+++++|++|+|++|+|++..|
T Consensus       468 ------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  535 (635)
T 4g8a_A          468 ------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT  535 (635)
T ss_dssp             ------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred             ------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence                        34889999999985 45678999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCeEEccCCCCcccCCCccccC-CCCCcccccCCCCCCCCCC
Q 042603          736 PQLIVLNTLAVFRVAYNNLSGKIPDRVAQF-STFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       736 ~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~-~~l~~~~~~gNp~~C~~~l  784 (874)
                      ..+..+++|++|++++|+|++.+|..+..+ .+++.++++||||.|+|.+
T Consensus       536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            999999999999999999999999988887 5799999999999997654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.5e-45  Score=427.97  Aligned_cols=436  Identities=19%  Similarity=0.265  Sum_probs=274.6

Q ss_pred             eeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCC------cc------cCCcchhcCCCCCCEEEccCCcccccccCC
Q 042603          255 QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNL------SG------EFPNWLPENNTDLKTLLLANNSLFGSFRMP  322 (874)
Q Consensus       255 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l------~~------~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~  322 (874)
                      +++.|+++++.+.|.+|..++++++|+.|++++|.+      .+      .+|...   +..|+ ++++.+.+.+..+..
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence            788999999999999999999999999999999965      22      122211   11222 233333222222211


Q ss_pred             ccC-------------------CCcccEEEc--cCCcCCccCChhhhcCCCCCcEEEccCCcCCcc--------------
Q 042603          323 IHC-------------------LQKLATLDV--SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGS--------------  367 (874)
Q Consensus       323 ~~~-------------------l~~L~~L~L--s~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~--------------  367 (874)
                      +..                   ...++.+.+  ..|.+++ +|..+.. +++|++|++++|.+++.              
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence            110                   001111111  1344544 5554433 45555555555555543              


Q ss_pred             ---cchhcc--CCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCc-ccc-cCCccccCC------CCCCeEEccC
Q 042603          368 ---IPSSFA--DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNT-LQG-HIFSEKFNL------TNLKRLQLDG  434 (874)
Q Consensus       368 ---~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~  434 (874)
                         +|..+.  ++++|++|++++|.+.+.+|..+. .+++|++|++++|. +++ .+|..+..+      ++|++|++++
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence               555555  555555555555555555554443 35555555555555 555 445444443      5666666666


Q ss_pred             CcCcccCCc--cccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCC-CCEEECcCCcCcc
Q 042603          435 NKFIGEIPE--SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC-LKVLDLSNNSIFG  511 (874)
Q Consensus       435 n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~  511 (874)
                      |+++ .+|.  .+..+++|++|++++|.++|.+| .++.+++|+.|++++|++. .+|..+..+++ |++|++++|+++ 
T Consensus       315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            6666 5555  56666666666666666665566 5666666666666666666 45555666666 666666666666 


Q ss_pred             cCCCCCC---CCcccEEEeeCcccCccchhhhh-------cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc
Q 042603          512 TLPSCLS---LGSIEQVHLSKNKIEGQLESIIH-------YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE  581 (874)
Q Consensus       512 ~~~~~~~---~~~L~~L~l~~n~i~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  581 (874)
                      .+|..+.   +++|+.|++++|++++..|..+.       .+++|++|++++|+++...+..+..+++|++|++++|+++
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            4554433   23566677777766666666555       5667777777777777444444555777777777777777


Q ss_pred             ccCCcc-ccCC-------CCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceE
Q 042603          582 GEIPVQ-LCQL-------KEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV  653 (874)
Q Consensus       582 ~~~~~~-~~~l-------~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (874)
                       .+|.. +...       ++|+.|++++|+++ .+|..+...                                      
T Consensus       471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~--------------------------------------  510 (636)
T 4eco_A          471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT--------------------------------------  510 (636)
T ss_dssp             -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT--------------------------------------
T ss_pred             -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc--------------------------------------
Confidence             34433 3222       27888888888887 666554310                                      


Q ss_pred             EEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEec------CCcccccchhhhccCCCCCCEEECCC
Q 042603          654 QFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL------SHNNLTGTIPTTFSNLKQIESLDLSY  727 (874)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~LdLs~  727 (874)
                                    .+++|+.|+|++|++++ +|..++.+++|++|+|      ++|++.+.+|..++++++|++|||++
T Consensus       511 --------------~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~  575 (636)
T 4eco_A          511 --------------TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS  575 (636)
T ss_dssp             --------------TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             --------------cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence                          03478888888888886 7888888888888888      56778888999999999999999999


Q ss_pred             CcCcccCChhhhcCCCCCeEEccCCCCcccCC
Q 042603          728 NLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP  759 (874)
Q Consensus       728 N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  759 (874)
                      |++ +.+|..+.  ++|+.|++++|++....+
T Consensus       576 N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          576 NDI-RKVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             SCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             CcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence            999 67787755  789999999998765443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.1e-46  Score=435.69  Aligned_cols=442  Identities=19%  Similarity=0.245  Sum_probs=367.7

Q ss_pred             CCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCccc------c------cccCCccCCCcccEEEccCCcCCccCCh
Q 042603          278 HDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLF------G------SFRMPIHCLQKLATLDVSNNFFLGHIPV  345 (874)
Q Consensus       278 ~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~------~------~~~~~~~~l~~L~~L~Ls~n~l~~~i~~  345 (874)
                      ..++.|+++++.+.|.+|..+ +.++.|++|++++|.+.      +      .+|.  ..+..|+ +++++|.+.+.+|.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~--~~~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSD--EQKQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH--HHHHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchH--HHHHHHH-hhHHHhhhccCchh
Confidence            468889999999999999876 68999999999999762      1      1111  1144566 77787777776665


Q ss_pred             hhhcCCC------------------CCcEEEcc--CCcCCcccchhccCCCCcCEEEcccCcCCCC--------------
Q 042603          346 EIGTYLP------------------GLMHLNLS--RNAFNGSIPSSFADMKMLKSLDISYNQLTGA--------------  391 (874)
Q Consensus       346 ~~~~~l~------------------~L~~L~l~--~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~--------------  391 (874)
                      .+...+.                  .++.+.+.  +|.+++ +|..++++++|++|++++|.+++.              
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence            5442111                  22222222  578887 899999999999999999999975              


Q ss_pred             ---chhHHH-hcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCc-Ccc-cCCcccccc------CCCCeEEccCC
Q 042603          392 ---IPERMA-MGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNK-FIG-EIPESLSKC------YLLGGLYLSDN  459 (874)
Q Consensus       392 ---~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~------~~L~~L~l~~n  459 (874)
                         +|..+. ..+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+      ++|++|++++|
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence               787764 258999999999999999999999999999999999998 888 788888776      99999999999


Q ss_pred             cCCCCCch--hhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCC-CCCc-ccEEEeeCcccCcc
Q 042603          460 HLSGKIPR--WLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGS-IEQVHLSKNKIEGQ  535 (874)
Q Consensus       460 ~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~-L~~L~l~~n~i~~~  535 (874)
                      .++ .+|.  .++.+++|+.|++++|.+.|.+| .+..+++|++|++++|++. .+|..+ .+++ |++|++++|+++. 
T Consensus       316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-  391 (636)
T 4eco_A          316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-  391 (636)
T ss_dssp             CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-
T ss_pred             cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-
Confidence            999 7888  89999999999999999998889 8999999999999999998 566544 4888 9999999999994 


Q ss_pred             chhhhhcCC--CCcEEEccCccCCCCCchhhc-------CCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCC
Q 042603          536 LESIIHYYP--YLVTLDLSYNRLHGSIPNWID-------KLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG  606 (874)
Q Consensus       536 ~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  606 (874)
                      .|..+..++  +|++|++++|++++..|..+.       .+++|++|++++|++++..+..+..+++|+.|++++|+++ 
T Consensus       392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-  470 (636)
T 4eco_A          392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-  470 (636)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-
T ss_pred             cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-
Confidence            455666544  899999999999999998888       7889999999999999555555667999999999999998 


Q ss_pred             CCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccC
Q 042603          607 HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI  686 (874)
Q Consensus       607 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  686 (874)
                      .+|.........                                              ....+++|+.|+|++|+++ .+
T Consensus       471 ~i~~~~~~~~~~----------------------------------------------~~~~l~~L~~L~Ls~N~l~-~l  503 (636)
T 4eco_A          471 EIPKNSLKDENE----------------------------------------------NFKNTYLLTSIDLRFNKLT-KL  503 (636)
T ss_dssp             BCCSSSSEETTE----------------------------------------------ECTTGGGCCEEECCSSCCC-BC
T ss_pred             CcCHHHhccccc----------------------------------------------cccccCCccEEECcCCcCC-cc
Confidence            677543321100                                              0011348999999999999 78


Q ss_pred             Ccccc--ccccCCeEecCCcccccchhhhccCCCCCCEEEC------CCCcCcccCChhhhcCCCCCeEEccCCCCcccC
Q 042603          687 PTQIG--YLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDL------SYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKI  758 (874)
Q Consensus       687 p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL------s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  758 (874)
                      |..+.  .+++|+.|+|++|++++ +|..+.++++|++|+|      ++|++.+.+|..+..+++|+.|++++|++ +.+
T Consensus       504 p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i  581 (636)
T 4eco_A          504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV  581 (636)
T ss_dssp             CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred             ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence            88887  99999999999999998 8999999999999999      56889999999999999999999999999 677


Q ss_pred             CCccccCCCCCcccccCCCCCC
Q 042603          759 PDRVAQFSTFEEDSYEGNPFLC  780 (874)
Q Consensus       759 p~~~~~~~~l~~~~~~gNp~~C  780 (874)
                      |..+.  ++++.+++.+||+.|
T Consensus       582 p~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          582 NEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CSCCC--TTCCEEECCSCTTCE
T ss_pred             CHhHh--CcCCEEECcCCCCcc
Confidence            87544  789999999999988

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.2e-45  Score=416.39  Aligned_cols=455  Identities=20%  Similarity=0.182  Sum_probs=379.8

Q ss_pred             eEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccC
Q 042603          257 TSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSN  336 (874)
Q Consensus       257 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  336 (874)
                      +.++++++.++ .+|..+.  +++++|++++|.+.+..|.. +..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            46889999888 4776665  89999999999998654444 47899999999999999999899999999999999999


Q ss_pred             CcCCccCChhhhcCCCCCcEEEccCCcCCc-ccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCC--CEEEcccCcc
Q 042603          337 NFFLGHIPVEIGTYLPGLMHLNLSRNAFNG-SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL--EILALSNNTL  413 (874)
Q Consensus       337 n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L--~~L~L~~n~l  413 (874)
                      |.++ .+|..   .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++    ..+..+++|  ++|++++|.+
T Consensus        79 N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           79 NKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             SCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred             Ccee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence            9998 78876   48999999999999987 478999999999999999999985    223457788  9999999999


Q ss_pred             --cccCCccccCCC-CCCeEEccCCcCcccCC-ccccccCCCCeEEccCCc-------CCCCCchhhhccccCCeeecCC
Q 042603          414 --QGHIFSEKFNLT-NLKRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNH-------LSGKIPRWLGSLLALQDIIMPN  482 (874)
Q Consensus       414 --~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~  482 (874)
                        .+..+..+..+. ....+++++|.+.+..+ ..+..+++|+.+++++|.       +.+.+| .++.+++|+.|++++
T Consensus       151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN  229 (520)
T ss_dssp             TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred             cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence              777777776554 23467888888876554 457789999999999997       555554 688899999999999


Q ss_pred             CcccccCCcccc---CCCCCCEEECcCCcCcccCCCCC------CCCcccEEEeeCcccCccchhhhhcC---CCCcEEE
Q 042603          483 NNLEGPIPNEFC---QLDCLKVLDLSNNSIFGTLPSCL------SLGSIEQVHLSKNKIEGQLESIIHYY---PYLVTLD  550 (874)
Q Consensus       483 n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~  550 (874)
                      |.+.+..+..+.   ..++|++|++++|++.+.+|..+      .++.|+.+++++|.+ ..+...+..+   ++|+.|+
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence            988754322211   24689999999999998888765      489999999999999 4443444444   6899999


Q ss_pred             ccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCC--CCCchhhccccccccccCCCCC
Q 042603          551 LSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG--HIPPCLVNTALSEGYYDAVAPT  628 (874)
Q Consensus       551 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~~~~~~~~~~~~~~~  628 (874)
                      +++|.+....  ....+++|++|++++|++++..|..+..+++|+.|++++|++++  .+|..+..              
T Consensus       309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~--------------  372 (520)
T 2z7x_B          309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ--------------  372 (520)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT--------------
T ss_pred             cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh--------------
Confidence            9999987533  12688999999999999999899999999999999999999985  44444433              


Q ss_pred             ccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCc-cccccccCCeEecCCcccc
Q 042603          629 WDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPT-QIGYLTRIRALNLSHNNLT  707 (874)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~  707 (874)
                                                              +++|+.|++++|.+++.+|. .+..+++|+.|+|++|+++
T Consensus       373 ----------------------------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          373 ----------------------------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred             ----------------------------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence                                                    35899999999999985665 4889999999999999999


Q ss_pred             cchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          708 GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       708 ~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      +..|..+.  ++|++|||++|+++ .+|..+..+++|+.|++++|++++.++..+..+++++.+++.+||+.|+|++
T Consensus       413 ~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          413 DTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             GGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            98887765  79999999999999 7888888999999999999999965555578899999999999999997654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.7e-44  Score=408.80  Aligned_cols=458  Identities=16%  Similarity=0.160  Sum_probs=273.6

Q ss_pred             EEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccC
Q 042603           86 ILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDN  165 (874)
Q Consensus        86 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  165 (874)
                      +|++++|+++.   +|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus         4 ~l~ls~n~l~~---ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            4 LVDRSKNGLIH---VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             EEECTTSCCSS---CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             eEecCCCCccc---cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            44555555543   222222  4555555555555554445555555555555555555544455555555555555555


Q ss_pred             CcCCCCccccccCCCCCCEEEcccccccc-cCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccc
Q 042603          166 NDLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETE  244 (874)
Q Consensus       166 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~  244 (874)
                      |+++. +|..  .+++|++|++++|.+++ .+|. .++++++|++|++++|.+.+    ..+..+++|            
T Consensus        79 N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L------------  138 (520)
T 2z7x_B           79 NKLVK-ISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHL------------  138 (520)
T ss_dssp             SCCCE-EECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTS------------
T ss_pred             Cceee-cCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccc------------
Confidence            55542 3322  45555555555555544 2233 45555555555555554432    011111100            


Q ss_pred             cccCCCCCCceeeEEEccCCCC--CCCCChhccCCC-CCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCc-------
Q 042603          245 SHYNSLTPKFQLTSISLSGYGD--GGTFPKFLYHQH-DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNS-------  314 (874)
Q Consensus       245 ~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~~~~-~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~-------  314 (874)
                                +++.|++++|.+  .+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.       
T Consensus       139 ----------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  208 (520)
T 2z7x_B          139 ----------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY  208 (520)
T ss_dssp             ----------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred             ----------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence                      234555555554  444455544433 233456777777777777666778888888888876       


Q ss_pred             ccccccCCccCCCcccEEEccCCcCCccCChhhhc--CCCCCcEEEccCCcCCcccchhc-----cCCCCcCEEEcccCc
Q 042603          315 LFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGT--YLPGLMHLNLSRNAFNGSIPSSF-----ADMKMLKSLDISYNQ  387 (874)
Q Consensus       315 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~  387 (874)
                      +.+.++ .+..+++|+.|++++|.+.+..+..+..  ..++|++|++++|.+++.+|..+     ..+++|+.+++++|.
T Consensus       209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~  287 (520)
T 2z7x_B          209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV  287 (520)
T ss_dssp             HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred             eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence            555555 6778888999999888776543332221  13589999999999888888887     888889999999988


Q ss_pred             CCCCch-hHHHhc--CCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCC-
Q 042603          388 LTGAIP-ERMAMG--CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG-  463 (874)
Q Consensus       388 i~~~~~-~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-  463 (874)
                      +  .+| ..+...  ..+|+.|++++|.+.....  +..+++|++|++++|++++..|..+..+++|++|++++|++++ 
T Consensus       288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  363 (520)
T 2z7x_B          288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL  363 (520)
T ss_dssp             C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred             e--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence            8  555 333321  2568888888887764321  1456667777777777766666666666666666666666654 


Q ss_pred             -CCchhhhccccCCeeecCCCcccccCCc-cccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhh
Q 042603          464 -KIPRWLGSLLALQDIIMPNNNLEGPIPN-EFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH  541 (874)
Q Consensus       464 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  541 (874)
                       .+|..++.+++|++|++++|.+.+.+|. .+..++                       +|++|++++|++++..+..+.
T Consensus       364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~-----------------------~L~~L~Ls~N~l~~~~~~~l~  420 (520)
T 2z7x_B          364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK-----------------------SLLSLNMSSNILTDTIFRCLP  420 (520)
T ss_dssp             HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT-----------------------TCCEEECCSSCCCGGGGGSCC
T ss_pred             ccchHHHhhCCCCCEEECCCCcCCcccccchhccCc-----------------------cCCEEECcCCCCCcchhhhhc
Confidence             3334455555555555555555542332 244444                       455555555555444333332


Q ss_pred             cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCC
Q 042603          542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP  609 (874)
Q Consensus       542 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  609 (874)
                        ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus       421 --~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          421 --PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             --TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             --ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence              57788888888887 667766788888888888888884333347888888888888888887654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.2e-42  Score=403.85  Aligned_cols=534  Identities=19%  Similarity=0.146  Sum_probs=317.3

Q ss_pred             cEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCE
Q 042603           58 EHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQV  136 (874)
Q Consensus        58 ~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  136 (874)
                      ++.+.++..+. +|..       -.+.+++|+|++|+++..  .+.+|.++++|++|+|++|+|+++.+.+|.++++|++
T Consensus        34 ~~~~c~~~~l~~vP~~-------lp~~~~~LdLs~N~i~~l--~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~  104 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDN-------LPFSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST  104 (635)
T ss_dssp             TEEECTTSCCSSCCSS-------SCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CEEECCCCCcCccCCC-------CCcCCCEEEeeCCCCCCC--CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCE
Confidence            34566655554 5544       135799999999999863  3578999999999999999999888899999999999


Q ss_pred             EEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccc
Q 042603          137 LNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNH  216 (874)
Q Consensus       137 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  216 (874)
                      |+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++......+..+++|++|++++|+
T Consensus       105 L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          105 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             EECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            99999999987778899999999999999999988888899999999999999999763223378889999999999998


Q ss_pred             cccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCC-CCCCEEEcCCCCCcccCC
Q 042603          217 FQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ-HDLNNADLSHLNLSGEFP  295 (874)
Q Consensus       217 ~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~p  295 (874)
                      +++..+ ..+.                                             .+... .....++++.|.+.. ++
T Consensus       185 l~~~~~-~~l~---------------------------------------------~L~~l~~~~~~~~ls~n~l~~-i~  217 (635)
T 4g8a_A          185 IQSIYC-TDLR---------------------------------------------VLHQMPLLNLSLDLSLNPMNF-IQ  217 (635)
T ss_dssp             CCEECG-GGGH---------------------------------------------HHHTCTTCCCEEECTTCCCCE-EC
T ss_pred             cccccc-cccc---------------------------------------------chhhhhhhhhhhhcccCcccc-cC
Confidence            764211 1110                                             01111 123345555555542 22


Q ss_pred             cchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCc------CCcccc
Q 042603          296 NWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNA------FNGSIP  369 (874)
Q Consensus       296 ~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~------i~~~~~  369 (874)
                      ...+ ...                        .++.+++++|.....++...+..++.++...+..+.      +.....
T Consensus       218 ~~~~-~~~------------------------~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~  272 (635)
T 4g8a_A          218 PGAF-KEI------------------------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK  272 (635)
T ss_dssp             TTTT-TTC------------------------EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred             cccc-cch------------------------hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence            2211 112                        333444444433322333333334444443332221      111122


Q ss_pred             hhccCCCCcCEEEcccCcCCCCchh--HHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccc
Q 042603          370 SSFADMKMLKSLDISYNQLTGAIPE--RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSK  447 (874)
Q Consensus       370 ~~~~~l~~L~~L~l~~n~i~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  447 (874)
                      ..+..+..+...++..+........  ..+.....++.+.+.++.+....  .+.....++.|++.+|.+.+..+.   .
T Consensus       273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~  347 (635)
T 4g8a_A          273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---K  347 (635)
T ss_dssp             TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---B
T ss_pred             cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---c
Confidence            2233333333333333222111000  01112334444444444443221  122334444444444444322221   2


Q ss_pred             cCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccc--ccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEE
Q 042603          448 CYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE--GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQV  525 (874)
Q Consensus       448 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L  525 (874)
                      +..|+.+++.+|......  ....+++|+.+++++|.+.  +..+..+..+.+|+.++++.|......+.          
T Consensus       348 l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~----------  415 (635)
T 4g8a_A          348 LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN----------  415 (635)
T ss_dssp             CTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC----------
T ss_pred             chhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc----------
Confidence            333444444444443211  1223444444444444442  12233334444455555555444433333          


Q ss_pred             EeeCcccCccchhhhhcCCCCcEEEccCccCCCCCc-hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcC
Q 042603          526 HLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP-NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL  604 (874)
Q Consensus       526 ~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l  604 (874)
                                    +..+++|+.+++++|......+ ..+..+++++.++++.|.+.+..+..+..++.++.|++++|++
T Consensus       416 --------------~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~  481 (635)
T 4g8a_A          416 --------------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  481 (635)
T ss_dssp             --------------CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred             --------------ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccc
Confidence                          3334445555554444433322 2344555555666666665555555556666666666666654


Q ss_pred             CCC-CCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccc
Q 042603          605 SGH-IPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLT  683 (874)
Q Consensus       605 ~~~-~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~  683 (874)
                      ... .|..+..                                                      +++|+.|||++|+++
T Consensus       482 ~~~~~~~~~~~------------------------------------------------------l~~L~~L~Ls~N~L~  507 (635)
T 4g8a_A          482 QENFLPDIFTE------------------------------------------------------LRNLTFLDLSQCQLE  507 (635)
T ss_dssp             GGGEECSCCTT------------------------------------------------------CTTCCEEECTTSCCC
T ss_pred             ccccCchhhhh------------------------------------------------------ccccCEEECCCCccC
Confidence            321 2222211                                                      346777777777777


Q ss_pred             ccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC-CCCCeEEccCCCCccc
Q 042603          684 GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-NTLAVFRVAYNNLSGK  757 (874)
Q Consensus       684 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~l~ls~N~l~~~  757 (874)
                      +.+|..|+++++|++|+|++|+|++..|..|+++++|++|||++|+|++.+|..+..+ ++|+.|++++|++..-
T Consensus       508 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          508 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            7778888888888888888888888888888888888888888888888888888887 6788888888888754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.1e-43  Score=416.86  Aligned_cols=376  Identities=19%  Similarity=0.231  Sum_probs=264.8

Q ss_pred             CCCcccCCcchhcCCCCCCEEEccCCcccc-----------------cccCCcc--CCCcccEEEccCCcCCccCChhhh
Q 042603          288 LNLSGEFPNWLPENNTDLKTLLLANNSLFG-----------------SFRMPIH--CLQKLATLDVSNNFFLGHIPVEIG  348 (874)
Q Consensus       288 n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~Ls~n~l~~~i~~~~~  348 (874)
                      |.+.+ +|..+ ..+++|++|++++|.+.+                 .+|..+.  .+++|++|++++|.+.+.+|..+.
T Consensus       435 N~L~~-IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             CEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             Ccccc-hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence            44444 45443 455555555555555555                 4777766  899999999999998888887665


Q ss_pred             cCCCCCcEEEccCCc-CCc-ccchhccCCC-------CcCEEEcccCcCCCCchh-HHHhcCCCCCEEEcccCcccccCC
Q 042603          349 TYLPGLMHLNLSRNA-FNG-SIPSSFADMK-------MLKSLDISYNQLTGAIPE-RMAMGCFSLEILALSNNTLQGHIF  418 (874)
Q Consensus       349 ~~l~~L~~L~l~~n~-i~~-~~~~~~~~l~-------~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~  418 (874)
                      . +++|++|++++|. +++ .+|..+..++       +|++|++++|+++ .+|. ..+..+++|+.|++++|.++    
T Consensus       513 ~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~----  586 (876)
T 4ecn_A          513 D-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR----  586 (876)
T ss_dssp             G-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC----
T ss_pred             C-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc----
Confidence            5 7899999999998 887 7787666544       6666666666666 5554 12223555555555555554    


Q ss_pred             ccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhcccc-CCeeecCCCcccccCCccccCCC
Q 042603          419 SEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA-LQDIIMPNNNLEGPIPNEFCQLD  497 (874)
Q Consensus       419 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~  497 (874)
                                           .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+...+
T Consensus       587 ---------------------~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~  642 (876)
T 4ecn_A          587 ---------------------HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS  642 (876)
T ss_dssp             ---------------------BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred             ---------------------cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence                                 333 3444444444444444444 44444555555 555555555555 3444444443


Q ss_pred             C--CCEEECcCCcCcccCCCCC------CCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcC---
Q 042603          498 C--LKVLDLSNNSIFGTLPSCL------SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDK---  566 (874)
Q Consensus       498 ~--L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---  566 (874)
                      .  |+.|++++|++.+.+|...      ...+|+.|++++|+++.+++..+..+++|+.|+|++|+++ .+|..+..   
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~  721 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD  721 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT
T ss_pred             cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc
Confidence            3  6667777777666555433      3457888888888888777777778888999999998888 55554332   


Q ss_pred             -----CCCCcEEEccCccCcccCCcccc--CCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCccc
Q 042603          567 -----LPQLSYILLANNYIEGEIPVQLC--QLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSY  639 (874)
Q Consensus       567 -----l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  639 (874)
                           +++|+.|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+                        
T Consensus       722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L------------------------  775 (876)
T 4ecn_A          722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS------------------------  775 (876)
T ss_dssp             SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC------------------------
T ss_pred             ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC------------------------
Confidence                 238899999999888 6777776  88899999999999886 67666543                        


Q ss_pred             CCCCCCCCCccceEEEEecCcccccccccccCcceEEcCC------CcccccCCccccccccCCeEecCCcccccchhhh
Q 042603          640 FPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSC------NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT  713 (874)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  713 (874)
                                                    ++|+.|+|++      |.+.+.+|..++.+++|+.|+|++|++ +.+|..
T Consensus       776 ------------------------------~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~  824 (876)
T 4ecn_A          776 ------------------------------SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK  824 (876)
T ss_dssp             ------------------------------TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             ------------------------------CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence                                          4788888866      889999999999999999999999999 588887


Q ss_pred             ccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCc
Q 042603          714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS  755 (874)
Q Consensus       714 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  755 (874)
                      +.  ++|+.|||++|++....+..+.....+..+.+.+|.+.
T Consensus       825 l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          825 LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             hc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            76  69999999999999888887777777788888888765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.1e-41  Score=389.67  Aligned_cols=456  Identities=19%  Similarity=0.149  Sum_probs=362.9

Q ss_pred             eeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEc
Q 042603          255 QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDV  334 (874)
Q Consensus       255 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  334 (874)
                      ..+.++++++++++ +|..+.  +++++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGG-TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhh-hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            44789999998886 676554  78999999999998544444 478999999999999999999999999999999999


Q ss_pred             cCCcCCccCChhhhcCCCCCcEEEccCCcCCcc-cchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCC--CEEEcccC
Q 042603          335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGS-IPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL--EILALSNN  411 (874)
Q Consensus       335 s~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L--~~L~L~~n  411 (874)
                      ++|.++ .+|..   .+++|++|++++|.+++. .|..|.++++|++|++++|++++..    +..+++|  ++|++++|
T Consensus       108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEEEES
T ss_pred             CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEeecc
Confidence            999998 78876   488999999999999873 4689999999999999999998421    2335566  99999999


Q ss_pred             cc--cccCCccccCCC--CCCeEEccCCcCcccCCc-cccccCCCCeEEccCCcCC----CCCchhhhccccCCeeecCC
Q 042603          412 TL--QGHIFSEKFNLT--NLKRLQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLS----GKIPRWLGSLLALQDIIMPN  482 (874)
Q Consensus       412 ~l--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~  482 (874)
                      .+  ++..+..+..+.  .+ .+++++|.+.+.++. .+..+++|+.+++++|...    ......+..+++++.+++.+
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             cccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            99  887777776554  33 568888888765553 4567889999999998521    01224567788888888888


Q ss_pred             CcccccC----CccccCCCCCCEEECcCCcCcccCCCCC------CCCcccEEEeeCcccCccchhhhhc---CCCCcEE
Q 042603          483 NNLEGPI----PNEFCQLDCLKVLDLSNNSIFGTLPSCL------SLGSIEQVHLSKNKIEGQLESIIHY---YPYLVTL  549 (874)
Q Consensus       483 n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~i~~~~~~~~~~---l~~L~~L  549 (874)
                      +.+.+..    +..+ ..++|++|++++|++++.+|..+      .++.|+.++++.+.+ ..+...+..   ..+|++|
T Consensus       259 ~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L  336 (562)
T 3a79_B          259 IETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKML  336 (562)
T ss_dssp             EEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEE
T ss_pred             CcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEE
Confidence            7765421    1222 23589999999999998888754      256666666666666 333233322   3679999


Q ss_pred             EccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCC--CCchhhccccccccccCCCC
Q 042603          550 DLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGH--IPPCLVNTALSEGYYDAVAP  627 (874)
Q Consensus       550 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~~~~~~~~~~  627 (874)
                      ++++|.+....  ....+++|++|++++|++++..|..+..+++|+.|++++|++++.  +|..+..             
T Consensus       337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------------  401 (562)
T 3a79_B          337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-------------  401 (562)
T ss_dssp             EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-------------
T ss_pred             EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-------------
Confidence            99999987432  126789999999999999998999999999999999999999842  1222222             


Q ss_pred             CccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCc-cccccccCCeEecCCccc
Q 042603          628 TWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPT-QIGYLTRIRALNLSHNNL  706 (874)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l  706 (874)
                                                               +++|+.|++++|++++.+|. .+..+++|++|+|++|++
T Consensus       402 -----------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l  440 (562)
T 3a79_B          402 -----------------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML  440 (562)
T ss_dssp             -----------------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred             -----------------------------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence                                                     45899999999999985654 588999999999999999


Q ss_pred             ccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          707 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       707 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      ++.+|..+.  ++|++|||++|+++ .+|+.+..+++|+.|++++|++++.++..+..++.++.+++.+|||.|+|++
T Consensus       441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            988877665  79999999999999 6787778999999999999999965555478899999999999999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9e-41  Score=385.81  Aligned_cols=442  Identities=19%  Similarity=0.163  Sum_probs=238.0

Q ss_pred             CCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEE
Q 042603           82 ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLREL  161 (874)
Q Consensus        82 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  161 (874)
                      ++|++|++++|.++..  .+..|+++++|++|++++|++++..|.+|.++++|++|++++|.++ .+|..  .+++|++|
T Consensus        52 ~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQNSISEL--RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSSCCCCC--CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEE
T ss_pred             CCcCEEECCCCCcccc--ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEE
Confidence            4455555555554432  2234445555555555555555444444555555555555555544 23332  44555555


Q ss_pred             EccCCcCCCC-ccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccc
Q 042603          162 YIDNNDLRGS-LPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIY  240 (874)
Q Consensus       162 ~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~  240 (874)
                      ++++|++++. .|..|+++++|++|++++|++++ .   .+..+++|                                 
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L---------------------------------  169 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHL---------------------------------  169 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTS---------------------------------
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhc---------------------------------
Confidence            5555554432 23444555555555555554443 1   12222222                                 


Q ss_pred             cccccccCCCCCCceeeEEEccCCCC--CCCCChhccCCC-CCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCccc-
Q 042603          241 AETESHYNSLTPKFQLTSISLSGYGD--GGTFPKFLYHQH-DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLF-  316 (874)
Q Consensus       241 ~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~~~~-~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~-  316 (874)
                                    +|+.|++++|.+  ++..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|... 
T Consensus       170 --------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  235 (562)
T 3a79_B          170 --------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC  235 (562)
T ss_dssp             --------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH
T ss_pred             --------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccccc
Confidence                          224444444444  334444443332 11134566666666666555556677777777776411 


Q ss_pred             ---ccccCCccCCCcccEEEccCCcCCccCChhhh--cCCCCCcEEEccCCcCCcccchhc-----cCCCCcCEEEcccC
Q 042603          317 ---GSFRMPIHCLQKLATLDVSNNFFLGHIPVEIG--TYLPGLMHLNLSRNAFNGSIPSSF-----ADMKMLKSLDISYN  386 (874)
Q Consensus       317 ---~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~n  386 (874)
                         ......+..+++|+.++++++.+.+.......  ...++|++|++++|.+++.+|..+     ..++.|+.++++.+
T Consensus       236 ~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~  315 (562)
T 3a79_B          236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ  315 (562)
T ss_dssp             HHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC
T ss_pred             chHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc
Confidence               11112355667777777777665432111111  113478888888888887777766     66666666666666


Q ss_pred             cCCCCchhH-HHh--cCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCC
Q 042603          387 QLTGAIPER-MAM--GCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG  463 (874)
Q Consensus       387 ~i~~~~~~~-~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  463 (874)
                      .+  .+|.. ++.  ...+|+.|++++|.+.....  ...+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus       316 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  391 (562)
T 3a79_B          316 VF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN  391 (562)
T ss_dssp             CC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred             ee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence            66  44432 221  12457777777776643221  1355666666666666665555555556666666666665553


Q ss_pred             C--CchhhhccccCCeeecCCCcccccCC-ccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhh
Q 042603          464 K--IPRWLGSLLALQDIIMPNNNLEGPIP-NEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESII  540 (874)
Q Consensus       464 ~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  540 (874)
                      .  .|..+..+++|+.|++++|.+.+.+| ..+..                       +++|++|++++|++++..+..+
T Consensus       392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-----------------------l~~L~~L~l~~n~l~~~~~~~l  448 (562)
T 3a79_B          392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW-----------------------AESILVLNLSSNMLTGSVFRCL  448 (562)
T ss_dssp             TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC-----------------------CTTCCEEECCSSCCCGGGGSSC
T ss_pred             cccchhhhcCCCCCCEEECCCCcCCCccChhhhcC-----------------------cccCCEEECCCCCCCcchhhhh
Confidence            1  12334444444444444444444222 22333                       4555555555555554433322


Q ss_pred             hcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCC
Q 042603          541 HYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP  609 (874)
Q Consensus       541 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  609 (874)
                      .  ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       449 ~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             C--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             c--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            2  57778888888777 566666678888888888888884333337888888888888888887655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.3e-40  Score=371.71  Aligned_cols=381  Identities=20%  Similarity=0.198  Sum_probs=281.1

Q ss_pred             cEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcc
Q 042603          330 ATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALS  409 (874)
Q Consensus       330 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~  409 (874)
                      +.++.+++.++ .+|. +   .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            45777777776 6776 2   36899999999999888888899999999999999988877777666778899999999


Q ss_pred             cCcccccCCccccCCCCCCeEEccCCcCcccCCcc--ccccCCCCeEEccCCcCCCCCchh-hhccccCCeeecCCCccc
Q 042603          410 NNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPES--LSKCYLLGGLYLSDNHLSGKIPRW-LGSLLALQDIIMPNNNLE  486 (874)
Q Consensus       410 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~  486 (874)
                      +|.+++..+..+..+++|++|++++|++++..+..  +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            99998888888888999999999999988744443  888889999999999998776765 788899999999999988


Q ss_pred             ccCCccccCC--CCCCEEECcCCcCcccCCCC---------CCCCcccEEEeeCcccCccchhhhhcC---CCCcEEEcc
Q 042603          487 GPIPNEFCQL--DCLKVLDLSNNSIFGTLPSC---------LSLGSIEQVHLSKNKIEGQLESIIHYY---PYLVTLDLS  552 (874)
Q Consensus       487 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~---------~~~~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~Ls  552 (874)
                      +..+..+..+  .+|+.|++++|.+.+..+..         +.+++|++|++++|++++..+..+...   ++|+.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            8888777665  67889999999887655433         235678888888888887777666544   778888888


Q ss_pred             CccCCCCCchhhcCCCCCcEEEccCccCcccCCcccc--CCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCcc
Q 042603          553 YNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLC--QLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWD  630 (874)
Q Consensus       553 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~  630 (874)
                      +|.+.+...              ..+.+.+..+..+.  ..++|+.|++++|++++..|..+..                
T Consensus       248 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------  297 (455)
T 3v47_A          248 NSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH----------------  297 (455)
T ss_dssp             TCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT----------------
T ss_pred             ccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhccc----------------
Confidence            886654211              11111111111222  2356677777777766555544433                


Q ss_pred             ccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccch
Q 042603          631 HASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI  710 (874)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  710 (874)
                                                            +++|+.|++++|++++..|..|+.+++|++|+|++|++++..
T Consensus       298 --------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  339 (455)
T 3v47_A          298 --------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID  339 (455)
T ss_dssp             --------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             --------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence                                                  236667777777777666777777777777777777777776


Q ss_pred             hhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          711 PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       711 p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      |..|+++++|++|||++|++++..|..+..+++|+.|++++|++++.++..+..+++++.+++.+||+.|+||
T Consensus       340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            7777777777777777777777777777777777777777777777666666667777777777777777655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.9e-39  Score=363.95  Aligned_cols=387  Identities=20%  Similarity=0.182  Sum_probs=263.5

Q ss_pred             CEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEcc
Q 042603          281 NNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLS  360 (874)
Q Consensus       281 ~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~  360 (874)
                      +.++.+++.+. .+|. +   .++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            34566666665 5665 2   26899999999999888888899999999999999988777877777778999999999


Q ss_pred             CCcCCcccchhccCCCCcCEEEcccCcCCCCchhH-HHhcCCCCCEEEcccCcccccCCcc-ccCCCCCCeEEccCCcCc
Q 042603          361 RNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPER-MAMGCFSLEILALSNNTLQGHIFSE-KFNLTNLKRLQLDGNKFI  438 (874)
Q Consensus       361 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~  438 (874)
                      +|.+++..|..|.++++|++|++++|.+++.++.. .+..+++|++|++++|.+++..+.. +..+++|++|++++|+++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            99999888889999999999999999988654443 2445778888888888887776665 667788888888888877


Q ss_pred             ccCCcccccc--CCCCeEEccCCcCCCCCchhhh--------ccccCCeeecCCCcccccCCccccCCCCCCEEECcCCc
Q 042603          439 GEIPESLSKC--YLLGGLYLSDNHLSGKIPRWLG--------SLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNS  508 (874)
Q Consensus       439 ~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  508 (874)
                      +..+..+..+  ..++.|++++|.+.+..+..++        .+++|+.|++++|.+.+..|..+...            
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~------------  235 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA------------  235 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH------------
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc------------
Confidence            7777666655  5677777777777654433221        33445555555555544444333222            


Q ss_pred             CcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcC--CCCCcEEEccCccCcccCCc
Q 042603          509 IFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDK--LPQLSYILLANNYIEGEIPV  586 (874)
Q Consensus       509 l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~  586 (874)
                              ...++|+.|++++|.+.+..              +..+.+.+..+..+..  .++|++|++++|++.+..|.
T Consensus       236 --------~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  293 (455)
T 3v47_A          236 --------IAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS  293 (455)
T ss_dssp             --------TTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred             --------ccccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchh
Confidence                    01234444444444333211              1111111111122222  24555555666555555555


Q ss_pred             cccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccc
Q 042603          587 QLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRG  666 (874)
Q Consensus       587 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (874)
                      .+..+++|+.|++++|++++..|..+..                                                    
T Consensus       294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------------------------------------------  321 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNEINKIDDNAFWG----------------------------------------------------  321 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTT----------------------------------------------------
T ss_pred             hcccCCCCCEEECCCCcccccChhHhcC----------------------------------------------------
Confidence            5566666666666666665444433322                                                    


Q ss_pred             ccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCe
Q 042603          667 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAV  746 (874)
Q Consensus       667 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~  746 (874)
                        +++|+.|++++|.+++..|..|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|+.
T Consensus       322 --l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          322 --LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             --CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             --cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence              236666777777777667777888888888888888888888888888888888888888888777677788888888


Q ss_pred             EEccCCCCcccCCC
Q 042603          747 FRVAYNNLSGKIPD  760 (874)
Q Consensus       747 l~ls~N~l~~~~p~  760 (874)
                      |++++|++++.+|.
T Consensus       400 L~l~~N~l~~~~~~  413 (455)
T 3v47_A          400 IWLHTNPWDCSCPR  413 (455)
T ss_dssp             EECCSSCBCCCTTT
T ss_pred             EEccCCCcccCCCc
Confidence            88888888888774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.6e-39  Score=356.42  Aligned_cols=301  Identities=26%  Similarity=0.306  Sum_probs=162.9

Q ss_pred             CCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCce
Q 042603          155 LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKT  234 (874)
Q Consensus       155 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~  234 (874)
                      .+.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|. .++++.+|+.+++..|..                 
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~-----------------   70 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLD-----------------   70 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHH-----------------
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhc-----------------
Confidence            45566666666666 45566666666666666666666655555 455555554444443321                 


Q ss_pred             eccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCc
Q 042603          235 FNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNS  314 (874)
Q Consensus       235 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~  314 (874)
                                                                 ..++++++++|.+++ +|..    .++|++|++++|.
T Consensus        71 -------------------------------------------~~l~~L~l~~~~l~~-lp~~----~~~L~~L~l~~n~  102 (454)
T 1jl5_A           71 -------------------------------------------RQAHELELNNLGLSS-LPEL----PPHLESLVASCNS  102 (454)
T ss_dssp             -------------------------------------------HTCSEEECTTSCCSC-CCSC----CTTCSEEECCSSC
T ss_pred             -------------------------------------------cCCCEEEecCCcccc-CCCC----cCCCCEEEccCCc
Confidence                                                       122333333333331 2221    1455566666665


Q ss_pred             ccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchh
Q 042603          315 LFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE  394 (874)
Q Consensus       315 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  394 (874)
                      +.+. |.   .+++|++|++++|.+. .++..    .++|++|++++|.+++ +| .|.++++|++|++++|+++ .+|.
T Consensus       103 l~~l-p~---~~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~  170 (454)
T 1jl5_A          103 LTEL-PE---LPQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPD  170 (454)
T ss_dssp             CSSC-CC---CCTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCC
T ss_pred             CCcc-cc---ccCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCC
Confidence            5552 22   1356777777777766 34421    2578888888888885 56 5888888888888888887 3554


Q ss_pred             HHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhcccc
Q 042603          395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA  474 (874)
Q Consensus       395 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  474 (874)
                      .    .++|++|++++|.+++. + .+..+++|++|++++|++++ +|..   .++|++|++++|.+. .+|. ++.+++
T Consensus       171 ~----~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~  238 (454)
T 1jl5_A          171 L----PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPF  238 (454)
T ss_dssp             C----CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTT
T ss_pred             C----cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCC
Confidence            2    34788888888887763 3 56778888888888888774 3332   246777777777776 4553 666777


Q ss_pred             CCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCc
Q 042603          475 LQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN  554 (874)
Q Consensus       475 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n  554 (874)
                      |+.|++++|++++ +|..   .++|+.|++++|++.+ +|..  .++|++|++++|+++++..    ..++|++|++++|
T Consensus       239 L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N  307 (454)
T 1jl5_A          239 LTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSN  307 (454)
T ss_dssp             CCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEESC----CCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCcccC----cCCcCCEEECcCC
Confidence            7777777776664 3322   3566666666666654 3332  2455555555555554321    0134555555555


Q ss_pred             cCC
Q 042603          555 RLH  557 (874)
Q Consensus       555 ~l~  557 (874)
                      +++
T Consensus       308 ~l~  310 (454)
T 1jl5_A          308 EIR  310 (454)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.6e-38  Score=347.53  Aligned_cols=402  Identities=22%  Similarity=0.256  Sum_probs=202.0

Q ss_pred             eeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEc
Q 042603          255 QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDV  334 (874)
Q Consensus       255 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  334 (874)
                      +|+++.++++.+ +.+|..++++++|+++++++|.+.|.+|..+ +.+.+|+.+++.+|..           .++++|++
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~-----------~~l~~L~l   78 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLD-----------RQAHELEL   78 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhc-----------cCCCEEEe
Confidence            556666666665 5566666666666666666666655555543 3333332222222210           23466666


Q ss_pred             cCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCccc
Q 042603          335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ  414 (874)
Q Consensus       335 s~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~  414 (874)
                      ++|.++ .+|..    .++|++|++++|.+++ +|..   .++|++|++++|+++ .++..    .++|++|++++|.++
T Consensus        79 ~~~~l~-~lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           79 NNLGLS-SLPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             TTSCCS-CCCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCS
T ss_pred             cCCccc-cCCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCC
Confidence            666665 34431    3566666666666664 4432   256666666666666 23321    246667777777666


Q ss_pred             ccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCcccc
Q 042603          415 GHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFC  494 (874)
Q Consensus       415 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  494 (874)
                      + +| .+..+++|++|++++|++++ +|..+   .+|++|++++|.+++ +| .++.+++|+.|++++|.+++ +|..  
T Consensus       145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--  213 (454)
T 1jl5_A          145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--  213 (454)
T ss_dssp             S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred             C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence            5 33 46666667777777776664 33322   366677777776664 44 46666677777777776664 3322  


Q ss_pred             CCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEE
Q 042603          495 QLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL  574 (874)
Q Consensus       495 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  574 (874)
                       .++|++|++++|++. .+|.+..+++|++|++++|+++++..    ..++|++|++++|++++ +|..   .++|++|+
T Consensus       214 -~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~  283 (454)
T 1jl5_A          214 -PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLD  283 (454)
T ss_dssp             -CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred             -cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCcc---cCcCCEEE
Confidence             246677777777666 45554456667777777776665432    23567777777777664 3432   35677777


Q ss_pred             ccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEE
Q 042603          575 LANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQ  654 (874)
Q Consensus       575 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (874)
                      +++|++++. |.   -.++|+.|++++|++++ +|.                                            
T Consensus       284 ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~--------------------------------------------  314 (454)
T 1jl5_A          284 VSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCD--------------------------------------------  314 (454)
T ss_dssp             CCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECC--------------------------------------------
T ss_pred             CcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccC--------------------------------------------
Confidence            777776652 11   12566777777776652 110                                            


Q ss_pred             EEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc--
Q 042603          655 FTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG--  732 (874)
Q Consensus       655 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~--  732 (874)
                                   ..++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|++||+++|++++  
T Consensus       315 -------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~  373 (454)
T 1jl5_A          315 -------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFP  373 (454)
T ss_dssp             -------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC
T ss_pred             -------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCC
Confidence                         01256677777777774 4543   4667777777777773 444   35677777777777776  


Q ss_pred             cCChhhhcC-------------CCCCeEEccCCCCcc--cCCCccccCCCCCcccccCCCCCC
Q 042603          733 KIPPQLIVL-------------NTLAVFRVAYNNLSG--KIPDRVAQFSTFEEDSYEGNPFLC  780 (874)
Q Consensus       733 ~~p~~l~~l-------------~~L~~l~ls~N~l~~--~~p~~~~~~~~l~~~~~~gNp~~C  780 (874)
                      .+|.++..+             ++|+.|++++|++++  .+|..      +..+.+.+|...|
T Consensus       374 ~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~  430 (454)
T 1jl5_A          374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD  430 (454)
T ss_dssp             CCCTTCCEEECCC--------------------------------------------------
T ss_pred             CChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence            666666666             789999999999987  66653      3445566665544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.9e-36  Score=334.82  Aligned_cols=361  Identities=21%  Similarity=0.161  Sum_probs=229.0

Q ss_pred             ccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCC
Q 042603          102 QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTS  181 (874)
Q Consensus       102 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  181 (874)
                      ..++++++|++|++++|.+++. | .+.++++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  ++++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence            4677788888888888888865 4 578888888888888888864 3  77888888888888888764 3  778888


Q ss_pred             CCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEc
Q 042603          182 LRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISL  261 (874)
Q Consensus       182 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  261 (874)
                      |++|++++|++++ ++   +..+++|++|++++|++++.                                         
T Consensus       108 L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-----------------------------------------  142 (457)
T 3bz5_A          108 LTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-----------------------------------------  142 (457)
T ss_dssp             CCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-----------------------------------------
T ss_pred             CCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-----------------------------------------
Confidence            8888888888876 43   67777888888877765420                                         


Q ss_pred             cCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCc
Q 042603          262 SGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLG  341 (874)
Q Consensus       262 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  341 (874)
                                 .++.+++|+++++++|...+.++   +..+++|++|++++|++.+..   +..+               
T Consensus       143 -----------~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l---------------  190 (457)
T 3bz5_A          143 -----------DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQN---------------  190 (457)
T ss_dssp             -----------CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTC---------------
T ss_pred             -----------ccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccC---------------
Confidence                       02234456666666664433332   134445555555555444321   3334               


Q ss_pred             cCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccc
Q 042603          342 HIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK  421 (874)
Q Consensus       342 ~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  421 (874)
                                ++|++|++++|.+++.   .+..+++|++|++++|++++ +|   ...+++|+.|++++|.+++..   .
T Consensus       191 ----------~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~---~  250 (457)
T 3bz5_A          191 ----------KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD---V  250 (457)
T ss_dssp             ----------TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---C
T ss_pred             ----------CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC---H
Confidence                      4555555555555433   24455555555555555553 33   223555555555555555433   2


Q ss_pred             cCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCE
Q 042603          422 FNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKV  501 (874)
Q Consensus       422 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  501 (874)
                      ..+++|+.|++++|+              |+.+++++|.+.+.+|  ++.+++|+.|++++|...+.+|.   ..++|+.
T Consensus       251 ~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~  311 (457)
T 3bz5_A          251 STLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITE  311 (457)
T ss_dssp             TTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSC
T ss_pred             HHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceE
Confidence            344555566555442              3445566666555554  34566677777777665555543   3345555


Q ss_pred             EECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc
Q 042603          502 LDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE  581 (874)
Q Consensus       502 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  581 (874)
                      |++++|            ++|++|++++|+++++ +  +..+++|+.|++++|++++        ++.|..|.+++|.+.
T Consensus       312 L~l~~~------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~  368 (457)
T 3bz5_A          312 LDLSQN------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFE  368 (457)
T ss_dssp             CCCTTC------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEE
T ss_pred             echhhc------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEE
Confidence            555554            4677778888877775 2  7778888888888888875        245666678888887


Q ss_pred             ccCCccccCCCCCCEEEccCCcCCCCCCchhhc
Q 042603          582 GEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN  614 (874)
Q Consensus       582 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  614 (874)
                      |.     ..+..|+.+++++|+++|.+|+.+..
T Consensus       369 g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          369 AE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             EE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             ec-----ceeeecCccccccCcEEEEcChhHhc
Confidence            65     34556777889999999999876544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.9e-36  Score=339.38  Aligned_cols=345  Identities=18%  Similarity=0.190  Sum_probs=253.1

Q ss_pred             CEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccC
Q 042603          379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD  458 (874)
Q Consensus       379 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  458 (874)
                      +.++.+++.++ .+|..+   .+.++.|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            34555555555 555433   24566777777777766666777777777777777777777677777777777777777


Q ss_pred             CcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccch
Q 042603          459 NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLE  537 (874)
Q Consensus       459 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~  537 (874)
                      |.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+..+. +++|++|++++|+++++.+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            777765556677777788888888877777777777888888888888887776665544 7788888888888888777


Q ss_pred             hhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCc-hhhccc
Q 042603          538 SIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP-CLVNTA  616 (874)
Q Consensus       538 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~  616 (874)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.......+|+.|++++|+++ .+|. .+..  
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~--  246 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRH--  246 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTT--
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcC--
Confidence            77888888888888888888777777888888888888888777777766666678888888888876 3442 2322  


Q ss_pred             cccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccC
Q 042603          617 LSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI  696 (874)
Q Consensus       617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L  696 (874)
                                                                          +++|+.|+|++|.+++..+..|..+++|
T Consensus       247 ----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  274 (477)
T 2id5_A          247 ----------------------------------------------------LVYLRFLNLSYNPISTIEGSMLHELLRL  274 (477)
T ss_dssp             ----------------------------------------------------CTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred             ----------------------------------------------------ccccCeeECCCCcCCccChhhccccccC
Confidence                                                                3477888888888887777778888888


Q ss_pred             CeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCC
Q 042603          697 RALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGN  776 (874)
Q Consensus       697 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gN  776 (874)
                      +.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.+..+.. ..+.......+.++
T Consensus       275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~  353 (477)
T 2id5_A          275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQ  353 (477)
T ss_dssp             CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTC
T ss_pred             CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCcc
Confidence            88888888888888888888888888888888888777777788888888888888877543321 11223334556777


Q ss_pred             CCCCCCC
Q 042603          777 PFLCGLP  783 (874)
Q Consensus       777 p~~C~~~  783 (874)
                      ...|..|
T Consensus       354 ~~~C~~p  360 (477)
T 2id5_A          354 QPTCATP  360 (477)
T ss_dssp             CCBEEES
T ss_pred             CceeCCc
Confidence            7777655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-36  Score=341.21  Aligned_cols=326  Identities=19%  Similarity=0.172  Sum_probs=296.1

Q ss_pred             CCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCC
Q 042603          403 LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN  482 (874)
Q Consensus       403 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  482 (874)
                      -+.++.+++.++.. |..+  .++++.|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        13 ~~~v~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFVAV-PEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCcC-CCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            35788888888754 4433  36899999999999988889999999999999999999988899999999999999999


Q ss_pred             CcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCc
Q 042603          483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP  561 (874)
Q Consensus       483 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  561 (874)
                      |.+.+..+..|.++++|++|++++|++.+..+..+. +++|++|++++|.++++.+..|..+++|+.|++++|++++..+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            999987777899999999999999999988877665 8999999999999999999999999999999999999998878


Q ss_pred             hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCC
Q 042603          562 NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFP  641 (874)
Q Consensus       562 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (874)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+..+.+|.....                           
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------  222 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY---------------------------  222 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT---------------------------
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc---------------------------
Confidence            88999999999999999999988889999999999999999987666654322                           


Q ss_pred             CCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCC
Q 042603          642 PNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE  721 (874)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  721 (874)
                                                 ..+|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..|.++++|+
T Consensus       223 ---------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  275 (477)
T 2id5_A          223 ---------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ  275 (477)
T ss_dssp             ---------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCC
T ss_pred             ---------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCC
Confidence                                       13789999999999965557899999999999999999999999999999999


Q ss_pred             EEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCCC
Q 042603          722 SLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS  785 (874)
Q Consensus       722 ~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l~  785 (874)
                      .|+|++|++++..|..+..+++|+.|++++|++++..+..+..+++++.+++.+||+.|+|++.
T Consensus       276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~  339 (477)
T 2id5_A          276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL  339 (477)
T ss_dssp             EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH
T ss_pred             EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH
Confidence            9999999999999999999999999999999999988888888999999999999999988753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6e-35  Score=328.65  Aligned_cols=346  Identities=23%  Similarity=0.323  Sum_probs=209.3

Q ss_pred             CCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEE
Q 042603          302 NTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSL  381 (874)
Q Consensus       302 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  381 (874)
                      +++++.|++.++.+....  .+..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+..+  +.++++|++|
T Consensus        45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            355666666666654432  2455566666666666655 3333  3335566666666666654333  5556666666


Q ss_pred             EcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcC
Q 042603          382 DISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL  461 (874)
Q Consensus       382 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  461 (874)
                      ++++|.+++ ++.  +..+++|++|++++|.+.+..  .+..+++|++|+++ |.+.+.  ..                 
T Consensus       118 ~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~--~~-----------------  172 (466)
T 1o6v_A          118 TLFNNQITD-IDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDL--KP-----------------  172 (466)
T ss_dssp             ECCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCC--GG-----------------
T ss_pred             ECCCCCCCC-ChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCc--hh-----------------
Confidence            666666552 222  234555555555555554321  24445555555553 222211  11                 


Q ss_pred             CCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhh
Q 042603          462 SGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH  541 (874)
Q Consensus       462 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  541 (874)
                             +..+++|+.|++++|.+.+.  ..+..+++|++|++++|++.+..| ...+++|+.|++++|++++.  ..+.
T Consensus       173 -------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~  240 (466)
T 1o6v_A          173 -------LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLA  240 (466)
T ss_dssp             -------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred             -------hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhh
Confidence                   44444555555555544422  224455555555555555554333 22355566666666665554  2466


Q ss_pred             cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccccccc
Q 042603          542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGY  621 (874)
Q Consensus       542 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~  621 (874)
                      .+++|++|++++|.+++..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++++..|  +..       
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~-------  307 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN-------  307 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-------
T ss_pred             cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-------
Confidence            67777777777777775544  6677777777777777775443  6777778888888777764222  111       


Q ss_pred             ccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEec
Q 042603          622 YDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL  701 (874)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  701 (874)
                                                                     +++|+.|++++|++++..|  ++.+++|+.|++
T Consensus       308 -----------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  338 (466)
T 1o6v_A          308 -----------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFF  338 (466)
T ss_dssp             -----------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred             -----------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence                                                           3477788888888876655  677888888888


Q ss_pred             CCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCccc
Q 042603          702 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGK  757 (874)
Q Consensus       702 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~  757 (874)
                      ++|++++.  ..++++++|+.|++++|++++..|  +..+++|+.|++++|.+++.
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            88888865  367788888888888888887766  77888888888888888764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.5e-35  Score=328.92  Aligned_cols=347  Identities=26%  Similarity=0.352  Sum_probs=257.9

Q ss_pred             CCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCc
Q 042603          276 HQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLM  355 (874)
Q Consensus       276 ~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  355 (874)
                      .++.++.++++++.+. .+|.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++.  +..+++|+
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred             HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence            4678999999999987 4665  3689999999999999988765  8899999999999999984 444  45589999


Q ss_pred             EEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCC
Q 042603          356 HLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGN  435 (874)
Q Consensus       356 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  435 (874)
                      +|++++|.+++..+  +.++++|++|++++|.++ .++.  +..+++|++|+++ |.+.+..  .+..+++|++|++++|
T Consensus       116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN  187 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence            99999999986543  899999999999999998 4554  4569999999997 4555433  3788999999999999


Q ss_pred             cCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCC
Q 042603          436 KFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPS  515 (874)
Q Consensus       436 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  515 (874)
                      ++.+.  ..+..+++|++|++++|.+.+..|  ++.+++|+.|++++|.+.+.  ..+..+++|+.|++++|++.     
T Consensus       188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-----  256 (466)
T 1o6v_A          188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-----  256 (466)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-----
T ss_pred             cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc-----
Confidence            98754  347778888888888888876544  56677777777777776642  24555555666666555554     


Q ss_pred             CCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCC
Q 042603          516 CLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVR  595 (874)
Q Consensus       516 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  595 (874)
                                        +..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++.+..+  +..+++|+
T Consensus       257 ------------------~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          257 ------------------NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             ------------------CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             ------------------cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence                              3332  4455566666666666654333  5566666666666666665433  56667777


Q ss_pred             EEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceE
Q 042603          596 LIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGI  675 (874)
Q Consensus       596 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  675 (874)
                      .|++++|++++..|  +..                                                      +++|+.|
T Consensus       313 ~L~L~~n~l~~~~~--~~~------------------------------------------------------l~~L~~L  336 (466)
T 1o6v_A          313 YLTLYFNNISDISP--VSS------------------------------------------------------LTKLQRL  336 (466)
T ss_dssp             EEECCSSCCSCCGG--GGG------------------------------------------------------CTTCCEE
T ss_pred             EEECcCCcCCCchh--hcc------------------------------------------------------CccCCEe
Confidence            77777777664332  111                                                      3477778


Q ss_pred             EcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCccc
Q 042603          676 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK  733 (874)
Q Consensus       676 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~  733 (874)
                      ++++|++++.  ..++.+++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            8888888754  468888999999999999998877  88899999999999999863

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.1e-35  Score=329.04  Aligned_cols=366  Identities=17%  Similarity=0.102  Sum_probs=204.9

Q ss_pred             CCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCC
Q 042603          265 GDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIP  344 (874)
Q Consensus       265 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~  344 (874)
                      ...+..+..++.+++|++|++++|.+.+ +|.  +..+++|++|++++|.+.+.   ++..+++|++|++++|.+++ ++
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~  101 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD  101 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred             CcCcccccChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee
Confidence            3344444556666677777777776664 342  24566666666666666554   25556666666666666653 33


Q ss_pred             hhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCC
Q 042603          345 VEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNL  424 (874)
Q Consensus       345 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  424 (874)
                         +..+++|++|++++|.+++. |  +..+++|++|++++|++++ ++   ...+++|++|++++|...+.+  .+..+
T Consensus       102 ---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l  169 (457)
T 3bz5_A          102 ---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQ  169 (457)
T ss_dssp             ---CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred             ---cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccC
Confidence               22355666666666666542 2  5556666666666666553 22   223555555555555333222  23444


Q ss_pred             CCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEEC
Q 042603          425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL  504 (874)
Q Consensus       425 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  504 (874)
                      ++|++|++++|++++. |  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++ +|  +..+++|+    
T Consensus       170 ~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~----  236 (457)
T 3bz5_A          170 TQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT----  236 (457)
T ss_dssp             TTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS----
T ss_pred             CcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC----
Confidence            5555555555555432 2  44445555555555554432   14444444444444444443 22  34444444    


Q ss_pred             cCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccC
Q 042603          505 SNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEI  584 (874)
Q Consensus       505 ~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  584 (874)
                                         .|++++|++++..   +..+++|+.|++++|              +|+.|++++|.+.+.+
T Consensus       237 -------------------~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~  280 (457)
T 3bz5_A          237 -------------------YFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF  280 (457)
T ss_dssp             -------------------EEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE
T ss_pred             -------------------EEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc
Confidence                               4444444444432   223344444444433              2333444444444444


Q ss_pred             CccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccc
Q 042603          585 PVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYY  664 (874)
Q Consensus       585 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (874)
                      |  +..+++|+.|++++|...+.+|.....+.                      .+..                      
T Consensus       281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~----------------------~L~l----------------------  314 (457)
T 3bz5_A          281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGIT----------------------ELDL----------------------  314 (457)
T ss_dssp             E--CTTCTTCCCCCCTTCTTCCEEECTTCCCS----------------------CCCC----------------------
T ss_pred             c--ccccccCCEEECCCCcccceeccCCCcce----------------------Eech----------------------
Confidence            3  23455555555555555444442111110                      0000                      


Q ss_pred             ccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCC
Q 042603          665 RGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL  744 (874)
Q Consensus       665 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L  744 (874)
                        ...++|+.|++++|++++. +  ++.+++|+.|++++|++++        ++.|+.|++++|.++|.     ..+..|
T Consensus       315 --~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l  376 (457)
T 3bz5_A          315 --SQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITM  376 (457)
T ss_dssp             --TTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred             --hhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeec
Confidence              0124788999999999974 3  8899999999999999996        35677788999999987     355667


Q ss_pred             CeEEccCCCCcccCCCcc
Q 042603          745 AVFRVAYNNLSGKIPDRV  762 (874)
Q Consensus       745 ~~l~ls~N~l~~~~p~~~  762 (874)
                      ..+++++|+++|.+|..+
T Consensus       377 ~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          377 PKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             CCBCCBTTBEEEECCTTC
T ss_pred             CccccccCcEEEEcChhH
Confidence            889999999999999753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.9e-34  Score=311.70  Aligned_cols=134  Identities=14%  Similarity=0.098  Sum_probs=60.1

Q ss_pred             CCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEE
Q 042603          352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQ  431 (874)
Q Consensus       352 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  431 (874)
                      ++++.|++++|.++...+..|..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45555555555555433333455555555555555554 22222223344444444444444444444444444444444


Q ss_pred             ccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccc
Q 042603          432 LDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE  486 (874)
Q Consensus       432 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  486 (874)
                      +++|+++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            4444444322222344444444444444444333333444444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.5e-34  Score=306.51  Aligned_cols=256  Identities=30%  Similarity=0.558  Sum_probs=207.5

Q ss_pred             CCeeecCCCcccc--cCCccccCCCCCCEEECcC-CcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEE
Q 042603          475 LQDIIMPNNNLEG--PIPNEFCQLDCLKVLDLSN-NSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLD  550 (874)
Q Consensus       475 L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  550 (874)
                      ++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+. +++|++|++++|++++..|..+..+++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            3444444444444  4444444445555555552 444444444332 55566666666666666677788888899999


Q ss_pred             ccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCC-CCCEEEccCCcCCCCCCchhhccccccccccCCCCCc
Q 042603          551 LSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK-EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTW  629 (874)
Q Consensus       551 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~  629 (874)
                      +++|.+++.+|..+..+++|++|++++|++++.+|..+..++ .|+.|++++|++++.+|..+...              
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--------------  197 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--------------  197 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--------------
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--------------
Confidence            999998888888888999999999999999888888888888 89999999999988888766542              


Q ss_pred             cccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccc
Q 042603          630 DHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT  709 (874)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  709 (874)
                                                               .|+.|++++|.+++.+|..|+.+++|+.|+|++|++++.
T Consensus       198 -----------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          198 -----------------------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             -----------------------------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             -----------------------------------------cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence                                                     378899999999999999999999999999999999988


Q ss_pred             hhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCCCCCC
Q 042603          710 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSC  788 (874)
Q Consensus       710 ~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l~~~c  788 (874)
                      +|. +..+++|++|||++|++++.+|..+..+++|+.|++++|+++|.+|.. .++++++.+++.|||++||.|+. .|
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCC-CC
Confidence            776 889999999999999999999999999999999999999999999996 88999999999999999998876 57

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-33  Score=325.53  Aligned_cols=334  Identities=17%  Similarity=0.159  Sum_probs=180.6

Q ss_pred             CCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeE
Q 042603          351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRL  430 (874)
Q Consensus       351 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  430 (874)
                      +++++.+++++|.+....+..|..+++|++|++++|.+++ ++...+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            3466666666666665555555666666666666666653 332223345566666666666655555555555566666


Q ss_pred             EccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCc
Q 042603          431 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIF  510 (874)
Q Consensus       431 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  510 (874)
                      ++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|+.|++++|.+.+..   +..+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            66665555444444455555555555555555555555555555555555555554431   233445555555555544


Q ss_pred             ccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccC
Q 042603          511 GTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ  590 (874)
Q Consensus       511 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  590 (874)
                      +..    ...+|+.|++++|.++...+..                           .++|+.|++++|.+++  +..+..
T Consensus       206 ~l~----~~~~L~~L~ls~n~l~~~~~~~---------------------------~~~L~~L~L~~n~l~~--~~~l~~  252 (597)
T 3oja_B          206 TLA----IPIAVEELDASHNSINVVRGPV---------------------------NVELTILKLQHNNLTD--TAWLLN  252 (597)
T ss_dssp             EEE----CCTTCSEEECCSSCCCEEECSC---------------------------CSCCCEEECCSSCCCC--CGGGGG
T ss_pred             ccc----CCchhheeeccCCccccccccc---------------------------CCCCCEEECCCCCCCC--Chhhcc
Confidence            211    1223444444444444332221                           1344444444444443  133444


Q ss_pred             CCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc
Q 042603          591 LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT  670 (874)
Q Consensus       591 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (874)
                      +++|+.|++++|.+++..|..+..                                                      ++
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------------l~  278 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVK------------------------------------------------------MQ  278 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTT------------------------------------------------------CS
T ss_pred             CCCCCEEECCCCccCCCCHHHhcC------------------------------------------------------cc
Confidence            444555555555444433333322                                                      12


Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      +|+.|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++..   +..+++|+.|+++
T Consensus       279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~  353 (597)
T 3oja_B          279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS  353 (597)
T ss_dssp             SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred             CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence            44555555555553 3444555666777777777776 45555666677777777777776542   4556677777777


Q ss_pred             CCCCcccCCCccccCCCCCcccccCCCCCCCC
Q 042603          751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGL  782 (874)
Q Consensus       751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~  782 (874)
                      +|++.+..+.  ..+..+....+.+++..|+.
T Consensus       354 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          354 HNDWDCNSLR--ALFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             SSCEEHHHHH--HHTTTCCTTTBCCCCCCCCT
T ss_pred             CCCCCChhHH--HHHHHHhhhccccccccCCc
Confidence            7777654332  33555666667788888865

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.7e-32  Score=298.79  Aligned_cols=242  Identities=21%  Similarity=0.200  Sum_probs=174.6

Q ss_pred             CCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCE
Q 042603          326 LQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEI  405 (874)
Q Consensus       326 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~  405 (874)
                      +++++.+++++|.+. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++. +...+..+++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCE
Confidence            567788888888776 67777766678888888888888877777888888888888888888744 3344456888888


Q ss_pred             EEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcc
Q 042603          406 LALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL  485 (874)
Q Consensus       406 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  485 (874)
                      |++++|.++...+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++.   .+..+++|+.+++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            88888888866666677888888888888888877777888888899999998888754   245567777777777766


Q ss_pred             cccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhc
Q 042603          486 EGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWID  565 (874)
Q Consensus       486 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  565 (874)
                      .+.     ...++|+.|++++|++...                       ...   ..++|+.|++++|.+++.  .++.
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~-----------------------~~~---~~~~L~~L~l~~n~l~~~--~~l~  245 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVV-----------------------RGP---VNVELTILKLQHNNLTDT--AWLL  245 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEE-----------------------ECC---CCSSCCEEECCSSCCCCC--GGGG
T ss_pred             ccc-----CCCCcceEEECCCCeeeec-----------------------ccc---ccccccEEECCCCCCccc--HHHc
Confidence            532     2334566666666665432                       111   124566666666666643  4566


Q ss_pred             CCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCC
Q 042603          566 KLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS  605 (874)
Q Consensus       566 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (874)
                      .+++|++|++++|.+.+..|..+..+++|+.|++++|+++
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  285 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred             CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence            7777777777777777766777777777777777777665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=9.1e-32  Score=290.97  Aligned_cols=304  Identities=21%  Similarity=0.295  Sum_probs=188.1

Q ss_pred             CCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeE
Q 042603          351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRL  430 (874)
Q Consensus       351 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  430 (874)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|+++ .++.  +..+++|++|++++|.+++.  ..+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            5677777777777763 33 3666777777777777776 3443  34566666666666666542  235555666666


Q ss_pred             EccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCc
Q 042603          431 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIF  510 (874)
Q Consensus       431 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  510 (874)
                      ++++|++.+..+  +..+++|+.|++++|......+ .+.                        .+++|++|++++|.+.
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~------------------------~l~~L~~L~l~~~~~~  168 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLS------------------------NMTGLNYLTVTESKVK  168 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGT------------------------TCTTCCEEECCSSCCC
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chh------------------------hCCCCcEEEecCCCcC
Confidence            666665553222  4455555555555554332222 244                        4444445555544443


Q ss_pred             ccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccC
Q 042603          511 GTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ  590 (874)
Q Consensus       511 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  590 (874)
                      +..+ ...+++|++|++++|.+++..+  +..+++|+.+++++|.+.+..+  +..+++|++|++++|++++..+  +..
T Consensus       169 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~  241 (347)
T 4fmz_A          169 DVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN  241 (347)
T ss_dssp             CCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             Cchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence            2222 2234455555555555554433  5566667777777776664433  5666777777777777664433  666


Q ss_pred             CCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc
Q 042603          591 LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT  670 (874)
Q Consensus       591 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (874)
                      +++|+.|++++|.+++ ++ .+.                                                      .++
T Consensus       242 l~~L~~L~l~~n~l~~-~~-~~~------------------------------------------------------~l~  265 (347)
T 4fmz_A          242 LSQLTWLEIGTNQISD-IN-AVK------------------------------------------------------DLT  265 (347)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGT------------------------------------------------------TCT
T ss_pred             CCCCCEEECCCCccCC-Ch-hHh------------------------------------------------------cCC
Confidence            7777777777776653 11 111                                                      134


Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      +|+.|++++|++++.  ..+..+++|+.|++++|++++..|..|+++++|++|++++|++++..|  +..+++|+.|+++
T Consensus       266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred             CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence            777777777777753  357778888888888888888888888888888888888888887665  7788888888888


Q ss_pred             CCCCc
Q 042603          751 YNNLS  755 (874)
Q Consensus       751 ~N~l~  755 (874)
                      +|+++
T Consensus       342 ~N~i~  346 (347)
T 4fmz_A          342 NQVIK  346 (347)
T ss_dssp             CC---
T ss_pred             hhccc
Confidence            88775

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-32  Score=317.12  Aligned_cols=312  Identities=21%  Similarity=0.219  Sum_probs=241.7

Q ss_pred             CCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeE
Q 042603          375 MKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGL  454 (874)
Q Consensus       375 l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  454 (874)
                      +++++.+++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            567888888888887 6777766678888888888888887777777777778888887777777666667777777777


Q ss_pred             EccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCc
Q 042603          455 YLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEG  534 (874)
Q Consensus       455 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~  534 (874)
                      ++++|.+++..+..|+.+++|+.|++++|.+.+..|..|..+++|++|++++|.+++                       
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------  185 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----------------------  185 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-----------------------
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-----------------------
Confidence            777777775555556666667777777666666666666666666666666666543                       


Q ss_pred             cchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhc
Q 042603          535 QLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN  614 (874)
Q Consensus       535 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  614 (874)
                      ..   +..+++|+.|++++|.+++     +...++|+.|++++|.+....+..   .++|+.|++++|.+++  +..+..
T Consensus       186 ~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~  252 (597)
T 3oja_B          186 VD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLN  252 (597)
T ss_dssp             CC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGG
T ss_pred             cC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhhcc
Confidence            21   3345667777777776663     234567888888888887543322   3689999999999985  233332


Q ss_pred             cccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccc
Q 042603          615 TALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLT  694 (874)
Q Consensus       615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~  694 (874)
                                                                            +++|+.|+|++|.+++.+|..|+.++
T Consensus       253 ------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          253 ------------------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             ------------------------------------------------------CTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             ------------------------------------------------------CCCCCEEECCCCccCCCCHHHhcCcc
Confidence                                                                  45899999999999999999999999


Q ss_pred             cCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCccccc
Q 042603          695 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYE  774 (874)
Q Consensus       695 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~  774 (874)
                      +|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..   +..++++..+++.
T Consensus       279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~  353 (597)
T 3oja_B          279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS  353 (597)
T ss_dssp             SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred             CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence            99999999999996 5777888999999999999999 67888999999999999999998764   4567899999999


Q ss_pred             CCCCCCCC
Q 042603          775 GNPFLCGL  782 (874)
Q Consensus       775 gNp~~C~~  782 (874)
                      ||||.|.|
T Consensus       354 ~N~~~~~~  361 (597)
T 3oja_B          354 HNDWDCNS  361 (597)
T ss_dssp             SSCEEHHH
T ss_pred             CCCCCChh
Confidence            99999965

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.5e-31  Score=289.27  Aligned_cols=307  Identities=24%  Similarity=0.336  Sum_probs=230.7

Q ss_pred             ccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCC
Q 042603          323 IHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS  402 (874)
Q Consensus       323 ~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~  402 (874)
                      +..+++|++|++++|.+. .++.  +..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++.  +..+++
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred             chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence            456889999999999987 5664  3448999999999999985544  999999999999999998 4553  457999


Q ss_pred             CCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCC
Q 042603          403 LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN  482 (874)
Q Consensus       403 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  482 (874)
                      |++|++++|.+++..+  +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|+.|++++
T Consensus       112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY  186 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred             CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence            9999999999987654  789999999999999766444 448899999999999999875433  66777777777777


Q ss_pred             CcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCch
Q 042603          483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN  562 (874)
Q Consensus       483 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  562 (874)
                      |.+.+..+  +..+++|+.|++++|.+.                       +..+  +..+++|++|++++|++++..+ 
T Consensus       187 n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~~~~--~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          187 NQIEDISP--LASLTSLHYFTAYVNQIT-----------------------DITP--VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------CCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             Cccccccc--ccCCCccceeecccCCCC-----------------------CCch--hhcCCcCCEEEccCCccCCCcc-
Confidence            77664322  555566666666655554                       3322  4555666666666666664333 


Q ss_pred             hhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCC
Q 042603          563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPP  642 (874)
Q Consensus       563 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  642 (874)
                       +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++. | .+..                            
T Consensus       239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~----------------------------  285 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNN----------------------------  285 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGG----------------------------
T ss_pred             -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcC----------------------------
Confidence             56666677777777766643  3566777777777777777532 1 1111                            


Q ss_pred             CCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCE
Q 042603          643 NGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIES  722 (874)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  722 (874)
                                                +++|+.|++++|.+++..|..++.+++|++|+|++|++++..|  +..+++|++
T Consensus       286 --------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  337 (347)
T 4fmz_A          286 --------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS  337 (347)
T ss_dssp             --------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred             --------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence                                      3578888899998888888889999999999999999998777  888999999


Q ss_pred             EECCCCcCc
Q 042603          723 LDLSYNLLH  731 (874)
Q Consensus       723 LdLs~N~l~  731 (874)
                      ||+++|+|+
T Consensus       338 L~l~~N~i~  346 (347)
T 4fmz_A          338 ADFANQVIK  346 (347)
T ss_dssp             ESSSCC---
T ss_pred             eehhhhccc
Confidence            999999885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.4e-34  Score=320.48  Aligned_cols=362  Identities=18%  Similarity=0.154  Sum_probs=204.0

Q ss_pred             CcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCc----ccchhccCCCCcCEEEcccCcCCCCchhHHHhcCC-
Q 042603          327 QKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG----SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF-  401 (874)
Q Consensus       327 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~-  401 (874)
                      ++|++||+++|+++......++..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5677888888877643333445557788888888888774    34566777888888888888887555555555555 


Q ss_pred             ---CCCEEEcccCcccc----cCCccccCCCCCCeEEccCCcCcccCCcccc-----ccCCCCeEEccCCcCCCCC----
Q 042603          402 ---SLEILALSNNTLQG----HIFSEKFNLTNLKRLQLDGNKFIGEIPESLS-----KCYLLGGLYLSDNHLSGKI----  465 (874)
Q Consensus       402 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~----  465 (874)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               57788888877764    3455666777777777777776543333222     1345666666666665432    


Q ss_pred             chhhhccccCCeeecCCCcccccCCcccc-----CCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhh
Q 042603          466 PRWLGSLLALQDIIMPNNNLEGPIPNEFC-----QLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESII  540 (874)
Q Consensus       466 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  540 (874)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++....                   ..+..+
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l  223 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCGIV  223 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHHHH
Confidence            33444455566666655555433222221     133445555554444321000                   123344


Q ss_pred             hcCCCCcEEEccCccCCCCC-----chhhcCCCCCcEEEccCccCccc----CCccccCCCCCCEEEccCCcCCCCCCch
Q 042603          541 HYYPYLVTLDLSYNRLHGSI-----PNWIDKLPQLSYILLANNYIEGE----IPVQLCQLKEVRLIDLSHNNLSGHIPPC  611 (874)
Q Consensus       541 ~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  611 (874)
                      ..+++|++|++++|++++..     +..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+..
T Consensus       224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence            45555555555555554321     11222355566666666655543    3444445566666666666554333322


Q ss_pred             hhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccccc----CC
Q 042603          612 LVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE----IP  687 (874)
Q Consensus       612 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p  687 (874)
                      +.....                                                 ...++|+.|++++|.+++.    +|
T Consensus       304 l~~~l~-------------------------------------------------~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          304 LCETLL-------------------------------------------------EPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             HHHHHT-------------------------------------------------STTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             HHHHhc-------------------------------------------------cCCccceeeEcCCCCCchHHHHHHH
Confidence            222100                                                 0012556666666666544    34


Q ss_pred             ccccccccCCeEecCCcccccchhhhccC-----CCCCCEEECCCCcCcc----cCChhhhcCCCCCeEEccCCCCcc
Q 042603          688 TQIGYLTRIRALNLSHNNLTGTIPTTFSN-----LKQIESLDLSYNLLHG----KIPPQLIVLNTLAVFRVAYNNLSG  756 (874)
Q Consensus       688 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~LdLs~N~l~~----~~p~~l~~l~~L~~l~ls~N~l~~  756 (874)
                      ..+..+++|++|+|++|++++..+..+..     .++|++|+|++|++++    .+|..+..+++|+.|++++|++++
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            44555566666666666666554444432     4566666666666664    556666666666666666666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.9e-32  Score=288.83  Aligned_cols=251  Identities=29%  Similarity=0.471  Sum_probs=181.3

Q ss_pred             CCCeEEccCCcCCC--CCchhhhccccCCeeecCC-CcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEE
Q 042603          450 LLGGLYLSDNHLSG--KIPRWLGSLLALQDIIMPN-NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQV  525 (874)
Q Consensus       450 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L  525 (874)
                      .++.|++++|.+.+  .+|..++.+++|++|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+. +++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            34455555555554  4555555555555555553 555555555555555555555555555555554333 5566666


Q ss_pred             EeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCC-CCcEEEccCccCcccCCccccCCCCCCEEEccCCcC
Q 042603          526 HLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLP-QLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL  604 (874)
Q Consensus       526 ~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l  604 (874)
                      ++++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|++
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            6666666666666777777788888888887777777777776 788888888888777777777776 88888888888


Q ss_pred             CCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccc
Q 042603          605 SGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG  684 (874)
Q Consensus       605 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  684 (874)
                      ++..|..+..                                                      +++|+.|++++|.+++
T Consensus       210 ~~~~~~~~~~------------------------------------------------------l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          210 EGDASVLFGS------------------------------------------------------DKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             EECCGGGCCT------------------------------------------------------TSCCSEEECCSSEECC
T ss_pred             cCcCCHHHhc------------------------------------------------------CCCCCEEECCCCceee
Confidence            7665554433                                                      3478888888888886


Q ss_pred             cCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCC-Cccc
Q 042603          685 EIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNN-LSGK  757 (874)
Q Consensus       685 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~-l~~~  757 (874)
                      .+|. +..+++|++|+|++|++++.+|..|..+++|++|||++|+++|.+|.. ..+++|+.+++++|+ ++|.
T Consensus       236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            6665 788899999999999999999999999999999999999999999886 888899999999998 7764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=9.4e-30  Score=272.70  Aligned_cols=288  Identities=19%  Similarity=0.240  Sum_probs=189.0

Q ss_pred             CCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECc
Q 042603          426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLS  505 (874)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  505 (874)
                      +++.++++++.++ .+|..+.  +.++.|++++|.+++..+..++++++|++|++++|.+++..|..+..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            5666666666665 3444332  467777777777776666677777777777777777777777777778888888888


Q ss_pred             CCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCC--CCchhhcCCCCCcEEEccCccCccc
Q 042603          506 NNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG--SIPNWIDKLPQLSYILLANNYIEGE  583 (874)
Q Consensus       506 ~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~  583 (874)
                      +|+++ .+|.... ++|++|++++|++++..+..+..+++|++|++++|.+..  ..+..+.++++|++|++++|.+.. 
T Consensus       109 ~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-  185 (330)
T 1xku_A          109 KNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-  185 (330)
T ss_dssp             SSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence            88776 3343332 678888888888887777777888888888888887753  556667777777777777777763 


Q ss_pred             CCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccc
Q 042603          584 IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYY  663 (874)
Q Consensus       584 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (874)
                      +|..+.  ++|+.|++++|++++..|..+..                                                 
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------------  214 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASLKG-------------------------------------------------  214 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGGTT-------------------------------------------------
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHhcC-------------------------------------------------
Confidence            443332  66777777777766544444332                                                 


Q ss_pred             cccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC--
Q 042603          664 YRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL--  741 (874)
Q Consensus       664 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l--  741 (874)
                           +++|+.|++++|.+++..+..++.+++|++|+|++|+++ .+|..+..+++|++|++++|+|++..+..+...  
T Consensus       215 -----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~  288 (330)
T 1xku_A          215 -----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY  288 (330)
T ss_dssp             -----CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred             -----CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence                 236666777777776666666666777777777777776 556666667777777777777766555555332  


Q ss_pred             ----CCCCeEEccCCCCcc--cCCCccccCCCCCcccccCC
Q 042603          742 ----NTLAVFRVAYNNLSG--KIPDRVAQFSTFEEDSYEGN  776 (874)
Q Consensus       742 ----~~L~~l~ls~N~l~~--~~p~~~~~~~~l~~~~~~gN  776 (874)
                          ..++.+++++|++..  ..|..+..+.+++.+++++|
T Consensus       289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence                556666666666642  33444445555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.9e-30  Score=276.81  Aligned_cols=126  Identities=23%  Similarity=0.252  Sum_probs=55.6

Q ss_pred             CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603          353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL  432 (874)
Q Consensus       353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  432 (874)
                      +++.++++++.++ .+|..+.  ++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4555555555554 3333332  34555555555554 222222233444555555555544444444444444444444


Q ss_pred             cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcc
Q 042603          433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL  485 (874)
Q Consensus       433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  485 (874)
                      ++|+++ .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            444444 2222221  3444444444444433333344444444444444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.4e-33  Score=315.01  Aligned_cols=308  Identities=18%  Similarity=0.142  Sum_probs=173.4

Q ss_pred             CCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCccccc----ccCCccCCCcccEEEccCCcCCccCChhhhcCCC--
Q 042603          279 DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGS----FRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLP--  352 (874)
Q Consensus       279 ~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~--  352 (874)
                      .+++|+++++.+++.....++..+++|++|++++|.+...    ++..+..+++|++|++++|.+.+..+..++..++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            4455666666655433333345667777777777776642    3445666788888888888876544445555455  


Q ss_pred             --CCcEEEccCCcCCc----ccchhccCCCCcCEEEcccCcCCCCchhHHHhc----CCCCCEEEcccCcccccC----C
Q 042603          353 --GLMHLNLSRNAFNG----SIPSSFADMKMLKSLDISYNQLTGAIPERMAMG----CFSLEILALSNNTLQGHI----F  418 (874)
Q Consensus       353 --~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~----~  418 (874)
                        +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+...    .++|++|++++|.+++..    +
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              68888888888874    457778888888888888888775444443322    345666666666665432    2


Q ss_pred             ccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhh-hccccCCeeecCCCccccc----CCccc
Q 042603          419 SEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWL-GSLLALQDIIMPNNNLEGP----IPNEF  493 (874)
Q Consensus       419 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~----~~~~~  493 (874)
                      ..+..+++|++|++++|.+.+..+..+..                    .+ ...++|++|++++|.+++.    ++..+
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  223 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQ--------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGIV  223 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHH--------------------HHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence            23334455555555555554322222211                    00 0123455555555544432    23344


Q ss_pred             cCCCCCCEEECcCCcCcccC-----CCCC-CCCcccEEEeeCcccCcc----chhhhhcCCCCcEEEccCccCCCCCchh
Q 042603          494 CQLDCLKVLDLSNNSIFGTL-----PSCL-SLGSIEQVHLSKNKIEGQ----LESIIHYYPYLVTLDLSYNRLHGSIPNW  563 (874)
Q Consensus       494 ~~l~~L~~L~L~~n~l~~~~-----~~~~-~~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  563 (874)
                      ..+++|++|++++|++.+..     +... .+++|++|++++|++++.    .+..+..+++|++|++++|.+++..+..
T Consensus       224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence            45555555666555554321     1111 144566666666655553    3445566777777777777766443333


Q ss_pred             hcC-----CCCCcEEEccCccCccc----CCccccCCCCCCEEEccCCcCCC
Q 042603          564 IDK-----LPQLSYILLANNYIEGE----IPVQLCQLKEVRLIDLSHNNLSG  606 (874)
Q Consensus       564 ~~~-----l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~N~l~~  606 (874)
                      +..     .++|++|++++|.+++.    ++..+..+++|+.|++++|.+++
T Consensus       304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            332     24666666666666543    23444455666666666665543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.7e-30  Score=275.20  Aligned_cols=287  Identities=18%  Similarity=0.257  Sum_probs=163.0

Q ss_pred             CCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECc
Q 042603          426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLS  505 (874)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  505 (874)
                      +++.++++++.++ .+|..+.  +.++.|++++|.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4555666665554 3343332  456666666666665555566666666666666666666666666666777777777


Q ss_pred             CCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCC--CCchhhcCCCCCcEEEccCccCccc
Q 042603          506 NNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG--SIPNWIDKLPQLSYILLANNYIEGE  583 (874)
Q Consensus       506 ~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~  583 (874)
                      +|++. .+|.... ++|++|++++|+++++.+..|..+++|++|++++|.++.  ..|..+..+ +|++|++++|++++ 
T Consensus       111 ~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-  186 (332)
T ss_dssp             SSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred             CCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence            77665 3333222 566666666666666666666666666666666666642  445555555 66666666666653 


Q ss_pred             CCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccc
Q 042603          584 IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYY  663 (874)
Q Consensus       584 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (874)
                      +|..+.  ++|+.|++++|.+++..|..+..                                                 
T Consensus       187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~-------------------------------------------------  215 (332)
T 2ft3_A          187 IPKDLP--ETLNELHLDHNKIQAIELEDLLR-------------------------------------------------  215 (332)
T ss_dssp             CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT-------------------------------------------------
T ss_pred             cCcccc--CCCCEEECCCCcCCccCHHHhcC-------------------------------------------------
Confidence            333332  45566666666655433332222                                                 


Q ss_pred             cccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC--
Q 042603          664 YRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL--  741 (874)
Q Consensus       664 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l--  741 (874)
                           +++|+.|++++|++++..|..++.+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..+...  
T Consensus       216 -----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  289 (332)
T 2ft3_A          216 -----YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF  289 (332)
T ss_dssp             -----CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred             -----CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence                 235555666666666555555666666666666666666 455556666666666666666665554444432  


Q ss_pred             ----CCCCeEEccCCCCc--ccCCCccccCCCCCcccccCC
Q 042603          742 ----NTLAVFRVAYNNLS--GKIPDRVAQFSTFEEDSYEGN  776 (874)
Q Consensus       742 ----~~L~~l~ls~N~l~--~~~p~~~~~~~~l~~~~~~gN  776 (874)
                          .+|+.+++++|++.  +..|..+..++.++.+++.+|
T Consensus       290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence                34556666666555  444444555555555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1e-29  Score=272.35  Aligned_cols=243  Identities=23%  Similarity=0.292  Sum_probs=150.9

Q ss_pred             CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603          353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL  432 (874)
Q Consensus       353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  432 (874)
                      +++.++++++.++ .+|..+.  +++++|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            6777888777776 4554443  56777777777777 344433445777777777777777766777777777777777


Q ss_pred             cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccc--cCCccccCCCCCCEEECcCCcCc
Q 042603          433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEG--PIPNEFCQLDCLKVLDLSNNSIF  510 (874)
Q Consensus       433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~  510 (874)
                      ++|+++ .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+..  ..+..+.++++|+.|++++|++.
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            777766 3343332  567777777777766656666667777777777776642  45556666666666666666665


Q ss_pred             ccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccC
Q 042603          511 GTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ  590 (874)
Q Consensus       511 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  590 (874)
                      . +|.... ++|++|++++|++++..+..+..+++|++|++++|++++..+.++..+++|++|++++|+++ .+|..+..
T Consensus       185 ~-l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          185 T-IPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             S-CCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             c-CCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence            3 332222 45666666666666555555555666666666666655555555555555555555555555 44555555


Q ss_pred             CCCCCEEEccCCcCC
Q 042603          591 LKEVRLIDLSHNNLS  605 (874)
Q Consensus       591 l~~L~~L~Ls~N~l~  605 (874)
                      +++|+.|++++|+++
T Consensus       262 l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          262 HKYIQVVYLHNNNIS  276 (330)
T ss_dssp             CSSCCEEECCSSCCC
T ss_pred             CCCcCEEECCCCcCC
Confidence            555555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=8.7e-28  Score=268.06  Aligned_cols=249  Identities=24%  Similarity=0.285  Sum_probs=182.1

Q ss_pred             eeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCcc
Q 042603          477 DIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNR  555 (874)
Q Consensus       477 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~  555 (874)
                      .++..+..++ .+|..+.  ++++.|+|++|++.+..+..+. +++|++|++++|+++++.+..|.++++|++|+|++|+
T Consensus        47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            3444444444 2333332  4566666666666655544433 6666667777777776667777777888888888888


Q ss_pred             CCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCch-hhccccccccccCCCCCccccCC
Q 042603          556 LHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPC-LVNTALSEGYYDAVAPTWDHASA  634 (874)
Q Consensus       556 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~~~~~~~~~~~  634 (874)
                      +++..+..|..+++|++|++++|++.+..+..+..+++|+.|++++|+..+.+|.. +..                    
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------------------  183 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG--------------------  183 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT--------------------
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc--------------------
Confidence            87666667777888888888888887766677778888888888875544333321 111                    


Q ss_pred             CCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhc
Q 042603          635 PALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTF  714 (874)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  714 (874)
                                                        +++|+.|++++|+++ .+| .+..+++|+.|+|++|++++..|..|
T Consensus       184 ----------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~  227 (440)
T 3zyj_A          184 ----------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSF  227 (440)
T ss_dssp             ----------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred             ----------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhh
Confidence                                              357788888888887 455 47788888888888888888888888


Q ss_pred             cCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          715 SNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       715 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      .++++|+.|+|++|++++..|..+..+++|+.|++++|++++.++..+..+++++.+++.+|||.|+|.+
T Consensus       228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            8888888888888888888888888888888888888888888887778888888888899999998765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=266.16  Aligned_cols=177  Identities=19%  Similarity=0.168  Sum_probs=84.7

Q ss_pred             CCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEEC
Q 042603          425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL  504 (874)
Q Consensus       425 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  504 (874)
                      +.....+.+++.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..|.++++|++|++
T Consensus        31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            33444555555554 3333322  24555555555555444444555555555555555555544445555555555555


Q ss_pred             cCCcCcccCCCCC-CCCcccEEEeeCcccCccch-hhhhcCCCCcEEEccCc-cCCCCCchhhcCCCCCcEEEccCccCc
Q 042603          505 SNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLE-SIIHYYPYLVTLDLSYN-RLHGSIPNWIDKLPQLSYILLANNYIE  581 (874)
Q Consensus       505 ~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~  581 (874)
                      ++|++++..+..+ .+++|++|++++|+++++.+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|++.
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            5555543322212 24445555555554444433 34444455555555544 233333444444455555555555544


Q ss_pred             ccCCccccCCCCCCEEEccCCcC
Q 042603          582 GEIPVQLCQLKEVRLIDLSHNNL  604 (874)
Q Consensus       582 ~~~~~~~~~l~~L~~L~Ls~N~l  604 (874)
                      +..|..+..+++|+.|++++|.+
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCS
T ss_pred             ccCHHHHhccccCCeecCCCCcc
Confidence            44444444444555555554444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.6e-27  Score=266.99  Aligned_cols=231  Identities=21%  Similarity=0.215  Sum_probs=143.4

Q ss_pred             CCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEcc
Q 042603          498 CLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA  576 (874)
Q Consensus       498 ~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~  576 (874)
                      +++.|+|++|++++..+..+. +++|++|++++|+++++.+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            444444444444444333332 4445555555555555555555555666666666666665555555566666666666


Q ss_pred             CccCcccCCccccCCCCCCEEEccCCcCCCCCCch-hhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEE
Q 042603          577 NNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPC-LVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQF  655 (874)
Q Consensus       577 ~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (874)
                      +|++.+..+..+..+++|+.|++++|+..+.+|.. +..                                         
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-----------------------------------------  194 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-----------------------------------------  194 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-----------------------------------------
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-----------------------------------------
Confidence            66666555555666666666666664433333221 111                                         


Q ss_pred             EecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCC
Q 042603          656 TTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP  735 (874)
Q Consensus       656 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  735 (874)
                                   +++|+.|++++|++++ +| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|
T Consensus       195 -------------l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  259 (452)
T 3zyi_A          195 -------------LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER  259 (452)
T ss_dssp             -------------CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred             -------------CCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence                         3466666666666663 33 36667777777777777777777777777777777777777777777


Q ss_pred             hhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          736 PQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       736 ~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      ..+..+++|+.|++++|++++.++..+..+++++.+++.+|||.|+|.+
T Consensus       260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            7777777777777777777777766667777777777777888787654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.1e-27  Score=253.86  Aligned_cols=232  Identities=19%  Similarity=0.245  Sum_probs=167.6

Q ss_pred             CCCCEEECcCCcCcccCCCCC-CCCcccEEEeeCcccCcc--chhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEE
Q 042603          497 DCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQ--LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYI  573 (874)
Q Consensus       497 ~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  573 (874)
                      ++|++|++++|++....+..+ .+++|++|++++|+++..  .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            355555666555553333322 355666666666665533  2455566777778888877777 355567777888888


Q ss_pred             EccCccCcccCC-ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccce
Q 042603          574 LLANNYIEGEIP-VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEET  652 (874)
Q Consensus       574 ~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  652 (874)
                      ++++|++.+..+ ..+..+++|+.|++++|.+++..|..+..                                      
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------  148 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------------------------------  148 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT--------------------------------------
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc--------------------------------------
Confidence            888887775554 56777788888888888776554443332                                      


Q ss_pred             EEEEecCcccccccccccCcceEEcCCCcccc-cCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCc
Q 042603          653 VQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  731 (874)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  731 (874)
                                      +++|+.|++++|.+++ .+|..+..+++|++|+|++|++++..|..|..+++|++|+|++|+++
T Consensus       149 ----------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          149 ----------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             ----------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             ----------------CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence                            3477788888888876 57778888888888888888888877888888888888888888888


Q ss_pred             ccCChhhhcCCCCCeEEccCCCCcccCCCccccCC-CCCcccccCCCCCCCCC
Q 042603          732 GKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       732 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~-~l~~~~~~gNp~~C~~~  783 (874)
                      +..+..+..+++|+.|++++|++++.+|..+..++ +++.+++.|||+.|+|+
T Consensus       213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            77777788888888888888888888887777774 78888888888888654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=8e-30  Score=297.24  Aligned_cols=430  Identities=14%  Similarity=0.078  Sum_probs=215.5

Q ss_pred             hhhhccCCCCCCEEEccCCccc---ccccC-----------ccccCCCCCcEEECCCccccccchhHHHHHhcCCC-CCE
Q 042603           22 LLQSIASFSSLKYLSMRGCVLK---GALHG-----------QDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMAS-LRI   86 (874)
Q Consensus        22 ~~~~l~~l~~L~~L~Ls~~~~~---~~~~~-----------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-L~~   86 (874)
                      ....+.++++|++|++++|...   +.+|.           .....+++|++|++++|.+.  ......+...++. |++
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~--~~~~~~l~~~~~~~L~~  142 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS--DLDLDRLAKARADDLET  142 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHHGGGCCE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec--HHHHHHHHHhccccCcE
Confidence            3445566777777777665321   11110           01115677777777777543  1111111222344 777


Q ss_pred             EEccccCCCCCccccccccCCCCCcEEEcCCCCCCCc----chhcccCCCCCCEEEccCCcCCCC----CcccccCCCCC
Q 042603           87 LSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDS----LLWCLANMTSLQVLNVASNQLTGN----FPPGFCELVLL  158 (874)
Q Consensus        87 L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L  158 (874)
                      |++++|.......++....++++|++|++++|.+++.    ++..+.++++|++|++++|.+++.    ++..+.++++|
T Consensus       143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L  222 (592)
T 3ogk_B          143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL  222 (592)
T ss_dssp             EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred             EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence            7777665211111222334677777777777766554    333445677777777777777622    33344567777


Q ss_pred             CEEEccCCcCCCCccccccCCCCCCEEEccccccc---ccCCccccCCCCCCCEEEccccccccccCcccccCCCCCcee
Q 042603          159 RELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT---ENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF  235 (874)
Q Consensus       159 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l  235 (874)
                      ++|++++|.+.+ ++..+.++++|++|+++.....   +.... .+..+++|+.|+++++...                 
T Consensus       223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~-----------------  283 (592)
T 3ogk_B          223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYM-NLVFPRKLCRLGLSYMGPN-----------------  283 (592)
T ss_dssp             CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSS-CCCCCTTCCEEEETTCCTT-----------------
T ss_pred             cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHH-HhhccccccccCccccchh-----------------
Confidence            777777777764 5567777777888777653222   11122 4556667777766553111                 


Q ss_pred             ccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcc
Q 042603          236 NGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL  315 (874)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l  315 (874)
                                                       .+|..+..+++|++|++++|.+.+.....+...+++|++|+++++-.
T Consensus       284 ---------------------------------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~  330 (592)
T 3ogk_B          284 ---------------------------------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG  330 (592)
T ss_dssp             ---------------------------------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH
T ss_pred             ---------------------------------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC
Confidence                                             12223333444444444444443322222224445555555552211


Q ss_pred             cccccCCccCCCcccEEEccC-----------CcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccC-CCCcCEEEc
Q 042603          316 FGSFRMPIHCLQKLATLDVSN-----------NFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFAD-MKMLKSLDI  383 (874)
Q Consensus       316 ~~~~~~~~~~l~~L~~L~Ls~-----------n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l  383 (874)
                      .+..+.....+++|++|++++           +.+++.....+...+++|++|+++.|.+++..+..+.. +++|+.|++
T Consensus       331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l  410 (592)
T 3ogk_B          331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL  410 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence            111222223345555555552           23332212222233556666666555555544444443 555666666


Q ss_pred             c----cCcCCCC-----chhHHHhcCCCCCEEEcccCc--ccccCCcccc-CCCCCCeEEccCCcCccc-CCccccccCC
Q 042603          384 S----YNQLTGA-----IPERMAMGCFSLEILALSNNT--LQGHIFSEKF-NLTNLKRLQLDGNKFIGE-IPESLSKCYL  450 (874)
Q Consensus       384 ~----~n~i~~~-----~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~~~~  450 (874)
                      +    .|.+++.     ++. +..++++|++|+++.|.  +++.....+. .+++|++|++++|++++. .+..+..+++
T Consensus       411 ~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  489 (592)
T 3ogk_B          411 VLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN  489 (592)
T ss_dssp             EECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred             eecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence            4    4445432     111 12345666666665332  3333222222 355666666666665542 2333455666


Q ss_pred             CCeEEccCCcCCCC-CchhhhccccCCeeecCCCcccccCCccc-cCCCCCCEEECcC
Q 042603          451 LGGLYLSDNHLSGK-IPRWLGSLLALQDIIMPNNNLEGPIPNEF-CQLDCLKVLDLSN  506 (874)
Q Consensus       451 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~  506 (874)
                      |++|++++|.+++. ++.....+++|+.|++++|++++.....+ ..++.+....+..
T Consensus       490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            66666666665432 23334456667777777776654432222 2445555444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.4e-29  Score=295.18  Aligned_cols=377  Identities=13%  Similarity=0.031  Sum_probs=207.2

Q ss_pred             CCCCCCEEEccCCcccccccCCccC-CC-cccEEEccCCcC-CccCChhhhcCCCCCcEEEccCCcCCcc----cchhcc
Q 042603          301 NNTDLKTLLLANNSLFGSFRMPIHC-LQ-KLATLDVSNNFF-LGHIPVEIGTYLPGLMHLNLSRNAFNGS----IPSSFA  373 (874)
Q Consensus       301 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~Ls~n~l-~~~i~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~  373 (874)
                      .+++|++|++++|.+.+.....+.. ++ +|++|++++|.- .......+...+++|++|++++|.+++.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            5667777777777665544333333 23 377777777651 1100111222356777777777766544    333445


Q ss_pred             CCCCcCEEEcccCcCCCCchh---HHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCc---ccCCccccc
Q 042603          374 DMKMLKSLDISYNQLTGAIPE---RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFI---GEIPESLSK  447 (874)
Q Consensus       374 ~l~~L~~L~l~~n~i~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~  447 (874)
                      .+++|++|++++|.+++.-..   .+...+++|+.|++++|.+.+ ++..+..+++|++|+++.....   +..+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            567777777777776522111   122346777777777776665 3455566677777777643222   223345566


Q ss_pred             cCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCC-ccccCCCCCCEEECcCCcCcc-cCCCCC-CCCcccE
Q 042603          448 CYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP-NEFCQLDCLKVLDLSNNSIFG-TLPSCL-SLGSIEQ  524 (874)
Q Consensus       448 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~-~~~~L~~  524 (874)
                      +++|+.++++++.. +.+|..+..+++|++|++++|.+.+... ..+..+++|++|+++ +.+.. .++... .+++|++
T Consensus       269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred             cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence            67777777776533 3556666667777777777776543322 234666777777776 33322 122221 2556777


Q ss_pred             EEee-----------CcccCccc-hhhhhcCCCCcEEEccCccCCCCCchhhcC-CCCCcEEEcc----CccCccc----
Q 042603          525 VHLS-----------KNKIEGQL-ESIIHYYPYLVTLDLSYNRLHGSIPNWIDK-LPQLSYILLA----NNYIEGE----  583 (874)
Q Consensus       525 L~l~-----------~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~l~----~n~~~~~----  583 (874)
                      |+++           .|.+++.. ......+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.    
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            7776           24555432 223445677777777666666555555554 6667777774    4455542    


Q ss_pred             -CCccccCCCCCCEEEccCCc--CCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCc
Q 042603          584 -IPVQLCQLKEVRLIDLSHNN--LSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNM  660 (874)
Q Consensus       584 -~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (874)
                       ++..+.++++|+.|+++++.  +++..+..+..                                              
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~----------------------------------------------  460 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ----------------------------------------------  460 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH----------------------------------------------
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH----------------------------------------------
Confidence             22224456666666665432  33222222111                                              


Q ss_pred             ccccccccccCcceEEcCCCccccc-CCccccccccCCeEecCCcccccc-hhhhccCCCCCCEEECCCCcCccc
Q 042603          661 SYYYRGRILTSMSGIDLSCNKLTGE-IPTQIGYLTRIRALNLSHNNLTGT-IPTTFSNLKQIESLDLSYNLLHGK  733 (874)
Q Consensus       661 ~~~~~~~~~~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~  733 (874)
                             .+++|+.|++++|++++. ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|++++.
T Consensus       461 -------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          461 -------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             -------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             -------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence                   123566666666666542 333445566666666666666543 233344566666666666666544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.4e-28  Score=260.49  Aligned_cols=206  Identities=20%  Similarity=0.171  Sum_probs=113.0

Q ss_pred             CCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeE
Q 042603          375 MKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGL  454 (874)
Q Consensus       375 l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  454 (874)
                      |+.....+.+++.++ .+|..+.   ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            334444566666665 5555432   356666666666665555556666666666666666666555666666666666


Q ss_pred             EccCCcCCCCCchhhhccccCCeeecCCCcccccCC-ccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccC
Q 042603          455 YLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP-NEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIE  533 (874)
Q Consensus       455 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~  533 (874)
                      ++++|.+++..+..++.+++|++|++++|++.+..+ ..+..+++|++|++++|+                      .++
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~----------------------~~~  163 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD----------------------TFT  163 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS----------------------SCC
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc----------------------ccc
Confidence            666666664444445566666666666666553332 245555555555555552                      233


Q ss_pred             ccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCC
Q 042603          534 GQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG  606 (874)
Q Consensus       534 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  606 (874)
                      +..+..+..+++|++|++++|++++..|..+..+++|++|++++|++....+..+..+++|+.|++++|++++
T Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence            3334444445555555555555554445555555555555555555543222223345555566666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8.4e-28  Score=254.62  Aligned_cols=87  Identities=25%  Similarity=0.351  Sum_probs=55.9

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCC-CCCeEEc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN-TLAVFRV  749 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~l~l  749 (874)
                      +|+.|++++|++++..|..++.+++|++|+|++|++++..+..+..+++|+.|||++|++++..|..+..++ +|+.|++
T Consensus       176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L  255 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  255 (306)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred             CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence            555555555655555566666666666666666666666555666666666666666666666666666663 6666666


Q ss_pred             cCCCCccc
Q 042603          750 AYNNLSGK  757 (874)
Q Consensus       750 s~N~l~~~  757 (874)
                      ++|++++.
T Consensus       256 ~~N~~~~~  263 (306)
T 2z66_A          256 TQNDFACT  263 (306)
T ss_dssp             TTCCEECS
T ss_pred             cCCCeecc
Confidence            66666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=8.7e-27  Score=243.95  Aligned_cols=226  Identities=19%  Similarity=0.200  Sum_probs=111.8

Q ss_pred             CeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCc
Q 042603          476 QDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN  554 (874)
Q Consensus       476 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n  554 (874)
                      +.++.+++.++. +|..+  .++|++|++++|++++..+..+. +++|++|++++|.++++.+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            345555555542 23222  23555555555555544433322 445555555555555544445555555555555555


Q ss_pred             c-CCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccC
Q 042603          555 R-LHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHAS  633 (874)
Q Consensus       555 ~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~  633 (874)
                      + +....|..+..+++|++|++++|++.+..|..+..+++|+.|                                    
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------------------------------------  134 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL------------------------------------  134 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE------------------------------------
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE------------------------------------
Confidence            4 443334444455555555555555544444444444444444                                    


Q ss_pred             CCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhh
Q 042603          634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT  713 (874)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  713 (874)
                                                                ++++|++++..+..|+.+++|++|+|++|++++..+..
T Consensus       135 ------------------------------------------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  172 (285)
T 1ozn_A          135 ------------------------------------------YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (285)
T ss_dssp             ------------------------------------------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ------------------------------------------ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence                                                      45555444444444455555555555555555444444


Q ss_pred             ccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCC
Q 042603          714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGL  782 (874)
Q Consensus       714 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~  782 (874)
                      |..+++|++|++++|++++..|..+..+++|+.|++++|++++.++..+..+++++.+++.+||+.|+|
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            555555555555555555555555555555555555555555444444444555555555555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.7e-26  Score=241.69  Aligned_cols=251  Identities=22%  Similarity=0.229  Sum_probs=167.8

Q ss_pred             eEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcc
Q 042603          453 GLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNK  531 (874)
Q Consensus       453 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~  531 (874)
                      .++.+++.++ .+|..+  .+++++|++++|.+++..+..|..+++|++|++++|++.+..|..+. +++|++|++++|.
T Consensus        15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            3444444444 233222  23555556666655555555566666666666666666555444433 5666666666665


Q ss_pred             -cCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCc
Q 042603          532 -IEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP  610 (874)
Q Consensus       532 -i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  610 (874)
                       ++...+..+..+++|++|++++|++++..|..+.++++|++|++++|++.+..+..+..+++|+.|++++|++++..+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence             6666666777778888888888888877777788888888888888888866666677788888888888877633222


Q ss_pred             hhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccc
Q 042603          611 CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI  690 (874)
Q Consensus       611 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~  690 (874)
                      .+..                                                      +++|+.|++++|.+++..|..|
T Consensus       172 ~~~~------------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~  197 (285)
T 1ozn_A          172 AFRG------------------------------------------------------LHSLDRLLLHQNRVAHVHPHAF  197 (285)
T ss_dssp             TTTT------------------------------------------------------CTTCCEEECCSSCCCEECTTTT
T ss_pred             HhcC------------------------------------------------------ccccCEEECCCCcccccCHhHc
Confidence            2222                                                      3477778888888887778888


Q ss_pred             cccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCc
Q 042603          691 GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDR  761 (874)
Q Consensus       691 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  761 (874)
                      +.+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+.. .....++.+..+.+.+.+..|..
T Consensus       198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            88888888888888888877777888888888888888887654432 11223444456667777666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.3e-26  Score=255.26  Aligned_cols=226  Identities=19%  Similarity=0.218  Sum_probs=130.7

Q ss_pred             cCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEcc
Q 042603          474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS  552 (874)
Q Consensus       474 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls  552 (874)
                      +++.|++++|++++..+..|.++++|+.|+|++|++.+..+..+. +++|++|++++|+++++.+..|..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            444444444444444444444555555555555555444433332 4455555555555555555555555555555555


Q ss_pred             CccCCCCCchhhcCCCCCcEEEccCc-cCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccc
Q 042603          553 YNRLHGSIPNWIDKLPQLSYILLANN-YIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDH  631 (874)
Q Consensus       553 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~  631 (874)
                      +|++++..+..|.++++|++|++++| .+....+..+.++++|+.|++++|++++ +|. +.                  
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~------------------  215 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LT------------------  215 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CT------------------
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-cc------------------
Confidence            55555444445555566666666553 3333333345666666666666666652 221 00                  


Q ss_pred             cCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchh
Q 042603          632 ASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP  711 (874)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  711 (874)
                                                          .+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|
T Consensus       216 ------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  259 (452)
T 3zyi_A          216 ------------------------------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER  259 (452)
T ss_dssp             ------------------------------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred             ------------------------------------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence                                                13466667777777776666677777777777777777776667


Q ss_pred             hhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCc
Q 042603          712 TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS  755 (874)
Q Consensus       712 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  755 (874)
                      ..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.
T Consensus       260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            77777777777777777777666666667777777777777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2e-26  Score=245.46  Aligned_cols=222  Identities=18%  Similarity=0.290  Sum_probs=135.3

Q ss_pred             CCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCC-CCCcccEEEeeCcccCccchhhhhcCCCCcEEEccC
Q 042603          475 LQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY  553 (874)
Q Consensus       475 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~  553 (874)
                      ++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+ .+++|++|++++|+++ .+|..+..+++|++|++++
T Consensus        83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred             eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence            333444444333 23333333444444444444444 333222 2444444444444444 2244455556666666666


Q ss_pred             ccCCCCCchhhc---------CCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccC
Q 042603          554 NRLHGSIPNWID---------KLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDA  624 (874)
Q Consensus       554 n~l~~~~~~~~~---------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~  624 (874)
                      |.+.+.+|..+.         ++++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|+.+..          
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~----------  227 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH----------  227 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG----------
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc----------
Confidence            555555555443         3677777777777776 566667777777777777777763 4444333          


Q ss_pred             CCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCc
Q 042603          625 VAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHN  704 (874)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  704 (874)
                                                                  +++|+.|++++|.+.+.+|..++.+++|++|+|++|
T Consensus       228 --------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          228 --------------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             --------------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred             --------------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence                                                        236777777777777777777777777777777777


Q ss_pred             ccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCc
Q 042603          705 NLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS  755 (874)
Q Consensus       705 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  755 (874)
                      ++.+.+|..++++++|++|||++|++.+.+|+.+..+++|+.+++..|.+.
T Consensus       264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            777777777777777777777777777777777777777777777765543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=254.69  Aligned_cols=247  Identities=20%  Similarity=0.212  Sum_probs=138.0

Q ss_pred             CCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcC
Q 042603          427 LKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSN  506 (874)
Q Consensus       427 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  506 (874)
                      .+.++..+..++ .+|..+.  ++++.|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|+|++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            445555555554 3343332  3455556666555555555555555555555555555555555555555555555555


Q ss_pred             CcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCc-cCcccCC
Q 042603          507 NSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANN-YIEGEIP  585 (874)
Q Consensus       507 n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~  585 (874)
                      |+++                       ++.+..|..+++|++|++++|+++...+..|.++++|++|++++| .+....+
T Consensus       122 n~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          122 NRLT-----------------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             SCCS-----------------------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             CcCC-----------------------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence            5554                       444444444455555555555554444444555555555555552 2222223


Q ss_pred             ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccc
Q 042603          586 VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYR  665 (874)
Q Consensus       586 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (874)
                      ..|.++++|+.|++++|+++ .+|. +.                                                    
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~-~~~~-~~----------------------------------------------------  204 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLR-EIPN-LT----------------------------------------------------  204 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCS-SCCC-CT----------------------------------------------------
T ss_pred             chhhcccccCeecCCCCcCc-cccc-cC----------------------------------------------------
Confidence            34555555555555555554 2221 00                                                    


Q ss_pred             cccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCC
Q 042603          666 GRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLA  745 (874)
Q Consensus       666 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~  745 (874)
                        .+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+
T Consensus       205 --~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          205 --PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             --TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             --CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence              023566666666666666666666666666666666666666666666666677777777766666666666666666


Q ss_pred             eEEccCCCCc
Q 042603          746 VFRVAYNNLS  755 (874)
Q Consensus       746 ~l~ls~N~l~  755 (874)
                      .|++++|++.
T Consensus       283 ~L~L~~Np~~  292 (440)
T 3zyj_A          283 RIHLHHNPWN  292 (440)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEcCCCCcc
Confidence            6776666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.9e-26  Score=245.61  Aligned_cols=225  Identities=16%  Similarity=0.198  Sum_probs=203.8

Q ss_pred             CCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEc
Q 042603          496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL  575 (874)
Q Consensus       496 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  575 (874)
                      .+.++.|++++|++....+....+++|++|++++|.++ ..|..+..+++|++|++++|+++ .+|..++++++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            47899999999999844444555999999999999999 66778899999999999999999 78999999999999999


Q ss_pred             cCccCcccCCccccC---------CCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCC
Q 042603          576 ANNYIEGEIPVQLCQ---------LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSP  646 (874)
Q Consensus       576 ~~n~~~~~~~~~~~~---------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (874)
                      ++|++.+.+|..+..         +++|+.|++++|+++ .+|..+..+                               
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l-------------------------------  205 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL-------------------------------  205 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC-------------------------------
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC-------------------------------
Confidence            999999999987765         999999999999998 788766553                               


Q ss_pred             CCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECC
Q 042603          647 MGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS  726 (874)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs  726 (874)
                                             ++|+.|++++|.+++ +|..++.+++|++|+|++|++.+.+|..|+++++|++|+|+
T Consensus       206 -----------------------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          206 -----------------------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             -----------------------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             -----------------------CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence                                   489999999999995 77789999999999999999999999999999999999999


Q ss_pred             CCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCC
Q 042603          727 YNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF  778 (874)
Q Consensus       727 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~  778 (874)
                      +|++.+.+|..+..+++|+.|++++|++.+.+|..+.+++++..+.+..|..
T Consensus       262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            9999999999999999999999999999999999999999988887765543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=6.6e-28  Score=256.18  Aligned_cols=266  Identities=20%  Similarity=0.169  Sum_probs=198.0

Q ss_pred             CeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCC
Q 042603          428 KRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNN  507 (874)
Q Consensus       428 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  507 (874)
                      +..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+  +..+++|++|++++|
T Consensus        13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            344555555544444445556678888888888877777778888888888888888776544  777888888888888


Q ss_pred             cCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCcc
Q 042603          508 SIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQ  587 (874)
Q Consensus       508 ~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  587 (874)
                      ++++..+    .++|++|++++|++++..+..   +++|++|++++|++++..+..+..+++|++|++++|++.+..+..
T Consensus        91 ~l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           91 YVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             EEEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             ccccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            8775432    367888888888888776543   567888888888888777777888888888888888888776666


Q ss_pred             cc-CCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccc
Q 042603          588 LC-QLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRG  666 (874)
Q Consensus       588 ~~-~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (874)
                      +. .+++|+.|++++|.+++. |..                                                       
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~-~~~-------------------------------------------------------  187 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDV-KGQ-------------------------------------------------------  187 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEE-ECC-------------------------------------------------------
T ss_pred             HhhccCcCCEEECCCCcCccc-ccc-------------------------------------------------------
Confidence            64 678888888888888632 110                                                       


Q ss_pred             ccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCc-ccCChhhhcCCCCC
Q 042603          667 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPPQLIVLNTLA  745 (874)
Q Consensus       667 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~~L~  745 (874)
                      ..+++|+.|++++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+
T Consensus       188 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~  265 (317)
T 3o53_A          188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (317)
T ss_dssp             CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred             cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence            013578888888888885 4555888889999999999988 46777888889999999999988 77788888888888


Q ss_pred             eEEccCC-CCcccCCC
Q 042603          746 VFRVAYN-NLSGKIPD  760 (874)
Q Consensus       746 ~l~ls~N-~l~~~~p~  760 (874)
                      .+++++| .+.|..|.
T Consensus       266 ~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          266 TVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             HHHHHHHHHHHSSSSC
T ss_pred             EEECCCchhccCCchh
Confidence            8888844 56665544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=4.8e-27  Score=264.07  Aligned_cols=244  Identities=21%  Similarity=0.233  Sum_probs=130.3

Q ss_pred             cCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccC
Q 042603          474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY  553 (874)
Q Consensus       474 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~  553 (874)
                      +|+.|++++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|+.|++++|.++++.+     .++|++|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcC
Confidence            44555555555544444445555555555555555544333 3334455555555555544332     14555555555


Q ss_pred             ccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccC
Q 042603          554 NRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHAS  633 (874)
Q Consensus       554 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~  633 (874)
                      |.+++..+.   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..                   
T Consensus       109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-------------------  166 (487)
T 3oja_A          109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-------------------  166 (487)
T ss_dssp             SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-------------------
T ss_pred             CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-------------------
Confidence            555543332   2355555556655555555555555556666666666555444433321                   


Q ss_pred             CCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhh
Q 042603          634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT  713 (874)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  713 (874)
                                                        .+++|+.|+|++|.+++..+  ...+++|+.|+|++|++++.+|. 
T Consensus       167 ----------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-  209 (487)
T 3oja_A          167 ----------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-  209 (487)
T ss_dssp             ----------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-
T ss_pred             ----------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-
Confidence                                              02355566666666654422  22356666666666666654333 


Q ss_pred             ccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCc-ccCCCccccCCCCCccccc-------CCCCCCCCC
Q 042603          714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS-GKIPDRVAQFSTFEEDSYE-------GNPFLCGLP  783 (874)
Q Consensus       714 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~-~~~p~~~~~~~~l~~~~~~-------gNp~~C~~~  783 (874)
                      |..+++|+.|||++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.+..+...       +||+.|.++
T Consensus       210 ~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence            6666666666666666664 4555666666666666666665 4444444444444444443       788888654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.9e-27  Score=252.03  Aligned_cols=249  Identities=19%  Similarity=0.252  Sum_probs=183.2

Q ss_pred             ccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcc-cccCCcccc-------CCCCCCEEECcCCcCcccCCCC
Q 042603          445 LSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL-EGPIPNEFC-------QLDCLKVLDLSNNSIFGTLPSC  516 (874)
Q Consensus       445 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~  516 (874)
                      +...++|+.+++++|.+  .+|..+...  ++.|++++|.+ ...+|..+.       ++++|++|++++|++++.+|..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34456677777777777  556655543  77777777777 334555544       6778888888888888777765


Q ss_pred             C---CCCcccEEEeeCcccCccchhhhhcC-----CCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCccc--CCc
Q 042603          517 L---SLGSIEQVHLSKNKIEGQLESIIHYY-----PYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGE--IPV  586 (874)
Q Consensus       517 ~---~~~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~  586 (874)
                      +   .+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..++.+++|++|++++|++.+.  .+.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            3   377888888888888877 6666665     8888888888888877778888888888888888887654  233


Q ss_pred             cc--cCCCCCCEEEccCCcCCC--CCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccc
Q 042603          587 QL--CQLKEVRLIDLSHNNLSG--HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSY  662 (874)
Q Consensus       587 ~~--~~l~~L~~L~Ls~N~l~~--~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (874)
                      .+  ..+++|+.|++++|++++  .++..+..                                                
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~------------------------------------------------  225 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAA------------------------------------------------  225 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH------------------------------------------------
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHh------------------------------------------------
Confidence            33  778888888888888862  11111110                                                


Q ss_pred             ccccccccCcceEEcCCCcccccCC-ccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC
Q 042603          663 YYRGRILTSMSGIDLSCNKLTGEIP-TQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL  741 (874)
Q Consensus       663 ~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l  741 (874)
                           .+++|+.|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|++|||++|+|++. |. +..+
T Consensus       226 -----~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l  295 (312)
T 1wwl_A          226 -----ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL  295 (312)
T ss_dssp             -----TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS
T ss_pred             -----cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhC
Confidence                 13578888888888887765 45667788888888888888 6676665  7888888888888876 55 8888


Q ss_pred             CCCCeEEccCCCCcc
Q 042603          742 NTLAVFRVAYNNLSG  756 (874)
Q Consensus       742 ~~L~~l~ls~N~l~~  756 (874)
                      ++|+.|++++|++++
T Consensus       296 ~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          296 PQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CEEEEEECTTCTTTC
T ss_pred             CCCCEEeccCCCCCC
Confidence            888888888888875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.7e-27  Score=252.96  Aligned_cols=267  Identities=21%  Similarity=0.224  Sum_probs=188.1

Q ss_pred             CEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccC
Q 042603          379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD  458 (874)
Q Consensus       379 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  458 (874)
                      +..+++.+.+. ..+..++..+++|++|++++|.+++..+..+..+++|++|++++|++++                   
T Consensus        13 ~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------------------   72 (317)
T 3o53_A           13 KIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-------------------   72 (317)
T ss_dssp             EEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-------------------
T ss_pred             eEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-------------------
Confidence            34445555444 3334444444555555555555555444445555555555555555443                   


Q ss_pred             CcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchh
Q 042603          459 NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLES  538 (874)
Q Consensus       459 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  538 (874)
                           ..+  +..+++|++|++++|.+++..     ..++|++|++++|++++..+..  +++|++|++++|++++..+.
T Consensus        73 -----~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~  138 (317)
T 3o53_A           73 -----TLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDL  138 (317)
T ss_dssp             -----EEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGB
T ss_pred             -----chh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccch
Confidence                 222  445555555566555555322     2367777777777776655443  46788888888888888888


Q ss_pred             hhhcCCCCcEEEccCccCCCCCchhh-cCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccc
Q 042603          539 IIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTAL  617 (874)
Q Consensus       539 ~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~  617 (874)
                      .+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++. + ....+++|+.|++++|++++ +|+.+..   
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~---  212 (317)
T 3o53_A          139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQS---  212 (317)
T ss_dssp             CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGG---
T ss_pred             hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcc---
Confidence            88888999999999999987777666 4689999999999999865 2 33458999999999999974 4443333   


Q ss_pred             ccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCC
Q 042603          618 SEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIR  697 (874)
Q Consensus       618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  697 (874)
                                                                         +++|+.|++++|+++ .+|..+..+++|+
T Consensus       213 ---------------------------------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~L~  240 (317)
T 3o53_A          213 ---------------------------------------------------AAGVTWISLRNNKLV-LIEKALRFSQNLE  240 (317)
T ss_dssp             ---------------------------------------------------GTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred             ---------------------------------------------------cCcccEEECcCCccc-chhhHhhcCCCCC
Confidence                                                               358999999999999 5788899999999


Q ss_pred             eEecCCcccc-cchhhhccCCCCCCEEECC-CCcCcccCChh
Q 042603          698 ALNLSHNNLT-GTIPTTFSNLKQIESLDLS-YNLLHGKIPPQ  737 (874)
Q Consensus       698 ~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs-~N~l~~~~p~~  737 (874)
                      .|+|++|.++ +.+|..+..+++|+.|+++ .+.++|..|..
T Consensus       241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             EEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            9999999999 8899999999999999999 45566665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.3e-27  Score=251.40  Aligned_cols=249  Identities=22%  Similarity=0.266  Sum_probs=194.7

Q ss_pred             cCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcC-CCCCchhhh-------ccccCCeeecCCCcccccCCccc
Q 042603          422 FNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL-SGKIPRWLG-------SLLALQDIIMPNNNLEGPIPNEF  493 (874)
Q Consensus       422 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~  493 (874)
                      ...++|+.+++++|.+  .+|..+...  ++.|++++|.+ ...+|..+.       ++++|++|++++|++++.+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3456777788888877  556655544  77788888877 345565554       67888888888888888777775


Q ss_pred             --cCCCCCCEEECcCCcCcccCCCCCC-C-----CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCC--Cchh
Q 042603          494 --CQLDCLKVLDLSNNSIFGTLPSCLS-L-----GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGS--IPNW  563 (874)
Q Consensus       494 --~~l~~L~~L~L~~n~l~~~~~~~~~-~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~  563 (874)
                        ..+++|++|++++|++++. |..+. +     ++|++|++++|++++..+..+..+++|++|++++|++.+.  .|..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              7888899999999988876 54433 3     7899999999999998888899999999999999998764  2334


Q ss_pred             h--cCCCCCcEEEccCccCccc---CCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcc
Q 042603          564 I--DKLPQLSYILLANNYIEGE---IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALS  638 (874)
Q Consensus       564 ~--~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (874)
                      +  +.+++|++|++++|++++.   ....+..+++|+.|++++|++++..|.....                        
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------  250 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD------------------------  250 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC------------------------
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh------------------------
Confidence            4  7889999999999999832   2234567899999999999998655421100                        


Q ss_pred             cCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCC
Q 042603          639 YFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLK  718 (874)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  718 (874)
                                                   .+++|+.|++++|+++ .+|..+.  ++|++|||++|+|++. |. +..++
T Consensus       251 -----------------------------~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~  296 (312)
T 1wwl_A          251 -----------------------------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP  296 (312)
T ss_dssp             -----------------------------CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred             -----------------------------hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC
Confidence                                         1358999999999999 7888777  8999999999999977 65 89999


Q ss_pred             CCCEEECCCCcCccc
Q 042603          719 QIESLDLSYNLLHGK  733 (874)
Q Consensus       719 ~L~~LdLs~N~l~~~  733 (874)
                      +|++|+|++|++++.
T Consensus       297 ~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          297 QVGNLSLKGNPFLDS  311 (312)
T ss_dssp             EEEEEECTTCTTTCC
T ss_pred             CCCEEeccCCCCCCC
Confidence            999999999999863

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=9.4e-25  Score=249.84  Aligned_cols=268  Identities=22%  Similarity=0.292  Sum_probs=157.5

Q ss_pred             CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603          353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL  432 (874)
Q Consensus       353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  432 (874)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|.+++...    .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence            5778888888877 5565554  67778888887777 5554    25666666666666654222    4455666666


Q ss_pred             cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 042603          433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT  512 (874)
Q Consensus       433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  512 (874)
                      ++|++++. |.   .+++|+.|++++|+++                        + +|..   +++|++|++++|++++ 
T Consensus       109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~------------------------~-lp~~---l~~L~~L~Ls~N~l~~-  155 (622)
T 3g06_A          109 FSNPLTHL-PA---LPSGLCKLWIFGNQLT------------------------S-LPVL---PPGLQELSVSDNQLAS-  155 (622)
T ss_dssp             CSCCCCCC-CC---CCTTCCEEECCSSCCS------------------------C-CCCC---CTTCCEEECCSSCCSC-
T ss_pred             cCCcCCCC-CC---CCCCcCEEECCCCCCC------------------------c-CCCC---CCCCCEEECcCCcCCC-
Confidence            66555532 22   2344444444444444                        2 2221   2455555555555543 


Q ss_pred             CCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCC
Q 042603          513 LPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK  592 (874)
Q Consensus       513 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  592 (874)
                      +|.  .+++|+.|++++|+++++.    ..+++|+.|++++|++++ +|.   .+++|+.|++++|.++. +|.   .++
T Consensus       156 l~~--~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~  221 (622)
T 3g06_A          156 LPA--LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPS  221 (622)
T ss_dssp             CCC--CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCT
T ss_pred             cCC--ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCC
Confidence            222  1245556666666655543    334666666666666664 332   23566667777776663 332   235


Q ss_pred             CCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCc
Q 042603          593 EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSM  672 (874)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  672 (874)
                      +|+.|++++|++++ +|..                                                         +++|
T Consensus       222 ~L~~L~Ls~N~L~~-lp~~---------------------------------------------------------l~~L  243 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LPVL---------------------------------------------------------PSEL  243 (622)
T ss_dssp             TCCEEECCSSCCSC-CCCC---------------------------------------------------------CTTC
T ss_pred             CCCEEEccCCccCc-CCCC---------------------------------------------------------CCcC
Confidence            67777777776653 3310                                                         2366


Q ss_pred             ceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCC
Q 042603          673 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN  742 (874)
Q Consensus       673 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  742 (874)
                      +.|++++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|++++.+|..+..++
T Consensus       244 ~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          244 KELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            67777777776 3444   4567777777777777 5566677777777777777777777776666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.1e-24  Score=249.17  Aligned_cols=268  Identities=21%  Similarity=0.257  Sum_probs=211.6

Q ss_pred             CCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecC
Q 042603          402 SLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMP  481 (874)
Q Consensus       402 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  481 (874)
                      .++.|++++|.++. +|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|++++ +|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            46677777777763 344333  67777777777776 3443   45778888888888774 444   56788888888


Q ss_pred             CCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCc
Q 042603          482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP  561 (874)
Q Consensus       482 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  561 (874)
                      +|.+++. |.   .+++|+.|++++|++++ +|..  +++|++|++++|+++++..    .+++|+.|++++|.+++ +|
T Consensus       110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~--l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~  177 (622)
T 3g06_A          110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP  177 (622)
T ss_dssp             SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CC
T ss_pred             CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC--CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc
Confidence            8888754 33   56889999999999985 4443  4799999999999997643    35789999999999995 55


Q ss_pred             hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCC
Q 042603          562 NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFP  641 (874)
Q Consensus       562 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (874)
                         ..+++|+.|++++|++++ +|.   .+++|+.|++++|.++ .+|..                              
T Consensus       178 ---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~------------------------------  219 (622)
T 3g06_A          178 ---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL------------------------------  219 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC------------------------------
T ss_pred             ---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC------------------------------
Confidence               557899999999999985 443   3578999999999987 33321                              


Q ss_pred             CCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCC
Q 042603          642 PNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE  721 (874)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  721 (874)
                                                 +++|+.|++++|++++ +|   ..+++|+.|+|++|+|++ +|.   .+++|+
T Consensus       220 ---------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~  264 (622)
T 3g06_A          220 ---------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLL  264 (622)
T ss_dssp             ---------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCC
T ss_pred             ---------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCc
Confidence                                       2488999999999995 66   456899999999999995 554   678999


Q ss_pred             EEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCC
Q 042603          722 SLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFS  766 (874)
Q Consensus       722 ~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~  766 (874)
                      .|+|++|+|+ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus       265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            9999999999 7799999999999999999999999887665544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.1e-27  Score=279.34  Aligned_cols=190  Identities=12%  Similarity=0.100  Sum_probs=99.8

Q ss_pred             CEEecCCCCCCCCchhhhccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEE
Q 042603            8 EELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRIL   87 (874)
Q Consensus         8 ~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L   87 (874)
                      +.++++++..  ......+.++++|++|++++|.....+.... ..        . +   .....++..+...+++|++|
T Consensus        46 ~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~-~~--------~-~---~~~~~~l~~l~~~~~~L~~L  110 (594)
T 2p1m_B           46 RKVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVP-DG--------W-G---GYVYPWIEAMSSSYTWLEEI  110 (594)
T ss_dssp             CEEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSC-TT--------S-C---CBCHHHHHHHHHHCTTCCEE
T ss_pred             eEEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhccccc-cc--------c-c---chhhHHHHHHHHhCCCCCeE
Confidence            3456655543  1223456677888888888775332221000 00        0 0   00112233445566777777


Q ss_pred             EccccCCCCCcccccccc-CCCCCcEEEcCCC-CCCCc-chhcccCCCCCCEEEccCCcCCCCCccccc----CCCCCCE
Q 042603           88 SLSYSRLNKNTILDQGLC-ELVHLQELYIRDN-DLRDS-LLWCLANMTSLQVLNVASNQLTGNFPPGFC----ELVLLRE  160 (874)
Q Consensus        88 ~Ls~n~~~~~~~~~~~l~-~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~  160 (874)
                      +++++.++...  ...+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+.    .+++|++
T Consensus       111 ~L~~~~~~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~  188 (594)
T 2p1m_B          111 RLKRMVVTDDC--LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS  188 (594)
T ss_dssp             EEESCBCCHHH--HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCE
T ss_pred             EeeCcEEcHHH--HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcE
Confidence            77776655421  12332 4667777777766 33322 233334677777777777766554433332    4567777


Q ss_pred             EEccCCc--CCC-CccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEcccc
Q 042603          161 LYIDNND--LRG-SLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNN  215 (874)
Q Consensus       161 L~Ls~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  215 (874)
                      |++++|.  +.. .++..+.++++|++|++++|...+.++. .+..+++|++|+++.+
T Consensus       189 L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGY  245 (594)
T ss_dssp             EECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBC
T ss_pred             EEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccc
Confidence            7777775  211 1112234457777777777632222443 5666777777776544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.6e-26  Score=256.94  Aligned_cols=237  Identities=21%  Similarity=0.168  Sum_probs=192.1

Q ss_pred             ccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEE
Q 042603          447 KCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVH  526 (874)
Q Consensus       447 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~  526 (874)
                      .+++|+.|++++|.+++..|..|+.+++|+.|++++|.+++..|  +..+++|++|++++|.+++..+.    ++|+.|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence            34467778888877777777777788888888888888776554  77788888888888888754432    6788888


Q ss_pred             eeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCcccc-CCCCCCEEEccCCcCC
Q 042603          527 LSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLC-QLKEVRLIDLSHNNLS  605 (874)
Q Consensus       527 l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~Ls~N~l~  605 (874)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|+|++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            888888887664   357889999999999988888888899999999999999988888776 7899999999999987


Q ss_pred             CCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccccc
Q 042603          606 GHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE  685 (874)
Q Consensus       606 ~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  685 (874)
                      +. |..                                                       ..+++|+.|+|++|.+++.
T Consensus       183 ~~-~~~-------------------------------------------------------~~l~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          183 DV-KGQ-------------------------------------------------------VVFAKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             EE-ECC-------------------------------------------------------CCCTTCCEEECCSSCCCEE
T ss_pred             cc-ccc-------------------------------------------------------ccCCCCCEEECCCCCCCCC
Confidence            43 110                                                       0145899999999999965


Q ss_pred             CCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCc-ccCChhhhcCCCCCeEEcc
Q 042603          686 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       686 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~~L~~l~ls  750 (874)
                      . ..++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       207 ~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          207 G-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             C-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             C-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            4 459999999999999999996 6778999999999999999998 7778888888888888886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=8.8e-28  Score=280.18  Aligned_cols=383  Identities=15%  Similarity=0.104  Sum_probs=175.2

Q ss_pred             CCCCCCEEEccCCcccccccCCcc-CCCcccEEEccCC-cCCccCChhhhcCCCCCcEEEccCCcCCcccchhcc----C
Q 042603          301 NNTDLKTLLLANNSLFGSFRMPIH-CLQKLATLDVSNN-FFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA----D  374 (874)
Q Consensus       301 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~----~  374 (874)
                      .+++|++|++++|.+.+.....+. .+++|++|++++| .+.......+...+++|++|++++|.+++..+..+.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            455666666666655544333332 3556666666665 332111122222355666666666665543333222    4


Q ss_pred             CCCcCEEEcccCc--CCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCC
Q 042603          375 MKMLKSLDISYNQ--LTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLG  452 (874)
Q Consensus       375 l~~L~~L~l~~n~--i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  452 (874)
                      +++|++|++++|.  ++......+...+++|++|++++|.-.+.++..+..+++|++|++..+...              
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--------------  248 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE--------------  248 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC--------------
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc--------------
Confidence            4566666666654  211111122223555666666555211123334444555555554433210              


Q ss_pred             eEEccCCcCCCCCchhhhccccCCee-ecCCCcccccCCccccCCCCCCEEECcCCcCcccCCC--CCCCCcccEEEeeC
Q 042603          453 GLYLSDNHLSGKIPRWLGSLLALQDI-IMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPS--CLSLGSIEQVHLSK  529 (874)
Q Consensus       453 ~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~L~~L~l~~  529 (874)
                         +..+.+. .++..+.++++|+.+ .+.+... +.++..+..+++|++|++++|.+.+....  ...+++|++|++++
T Consensus       249 ---~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~  323 (594)
T 2p1m_B          249 ---VRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD  323 (594)
T ss_dssp             ---CCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred             ---cchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence               1111111 112234444444444 2222111 12222233345555555555554322111  11245555555555


Q ss_pred             cccCcc-chhhhhcCCCCcEEEccC---------ccCCCCCchhhc-CCCCCcEEEccCccCcccCCcccc-CCCCCCEE
Q 042603          530 NKIEGQ-LESIIHYYPYLVTLDLSY---------NRLHGSIPNWID-KLPQLSYILLANNYIEGEIPVQLC-QLKEVRLI  597 (874)
Q Consensus       530 n~i~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L  597 (874)
                      | ++.. .+.....+++|++|++++         +.+++.....+. .+++|+.|.+..|.+++..+..+. .+++|+.|
T Consensus       324 ~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L  402 (594)
T 2p1m_B          324 Y-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF  402 (594)
T ss_dssp             G-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred             c-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence            5 2211 222233456666665522         333322222222 356666666666665544433333 35666666


Q ss_pred             Ecc--C----CcCCCCCCc--hhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccc
Q 042603          598 DLS--H----NNLSGHIPP--CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRIL  669 (874)
Q Consensus       598 ~Ls--~----N~l~~~~p~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (874)
                      +++  +    |.++. .|.  .+....                                                  ..+
T Consensus       403 ~L~~~~~~~~~~l~~-~~~~~~~~~l~--------------------------------------------------~~~  431 (594)
T 2p1m_B          403 RLCIIEPKAPDYLTL-EPLDIGFGAIV--------------------------------------------------EHC  431 (594)
T ss_dssp             EEEESSTTCCCTTTC-CCTHHHHHHHH--------------------------------------------------HHC
T ss_pred             EeecccCCCcccccC-CchhhHHHHHH--------------------------------------------------hhC
Confidence            666  2    33331 111  000000                                                  013


Q ss_pred             cCcceEEcCCCcccccCCccccc-cccCCeEecCCcccccchhhhc-cCCCCCCEEECCCCcCcccCCh-hhhcCCCCCe
Q 042603          670 TSMSGIDLSCNKLTGEIPTQIGY-LTRIRALNLSHNNLTGTIPTTF-SNLKQIESLDLSYNLLHGKIPP-QLIVLNTLAV  746 (874)
Q Consensus       670 ~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~LdLs~N~l~~~~p~-~l~~l~~L~~  746 (874)
                      ++|+.|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|++++..+. ....+++|+.
T Consensus       432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  510 (594)
T 2p1m_B          432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS  510 (594)
T ss_dssp             TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred             CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence            4566666655 555444444444 5667777777776665554444 5566677777777766544333 2234566777


Q ss_pred             EEccCCCCc
Q 042603          747 FRVAYNNLS  755 (874)
Q Consensus       747 l~ls~N~l~  755 (874)
                      |++++|+++
T Consensus       511 L~l~~~~~~  519 (594)
T 2p1m_B          511 LWMSSCSVS  519 (594)
T ss_dssp             EEEESSCCB
T ss_pred             EeeeCCCCC
Confidence            777776663

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=8e-25  Score=227.79  Aligned_cols=209  Identities=22%  Similarity=0.239  Sum_probs=142.4

Q ss_pred             CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEc
Q 042603          520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL  599 (874)
Q Consensus       520 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  599 (874)
                      +++++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|++++|++.+..+..+.++++|+.|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            34566666666666555556666666666666666666555556666666666666666666666666666677777777


Q ss_pred             cCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCC
Q 042603          600 SHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSC  679 (874)
Q Consensus       600 s~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  679 (874)
                      ++|++++..+..+..                                                      +++|+.|++++
T Consensus       108 ~~n~l~~~~~~~~~~------------------------------------------------------l~~L~~L~l~~  133 (276)
T 2z62_A          108 VETNLASLENFPIGH------------------------------------------------------LKTLKELNVAH  133 (276)
T ss_dssp             TTSCCCCSTTCCCTT------------------------------------------------------CTTCCEEECCS
T ss_pred             CCCCccccCchhccc------------------------------------------------------CCCCCEEECcC
Confidence            777665332222211                                                      34677777777


Q ss_pred             Cccccc-CCccccccccCCeEecCCcccccchhhhccCCCCCC----EEECCCCcCcccCChhhhcCCCCCeEEccCCCC
Q 042603          680 NKLTGE-IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE----SLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNL  754 (874)
Q Consensus       680 N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l  754 (874)
                      |.+++. +|..++.+++|++|+|++|++++..+..|..+++|+    +|++++|++++..+..+.. .+|+.|++++|++
T Consensus       134 n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l  212 (276)
T 2z62_A          134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQL  212 (276)
T ss_dssp             SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCC
T ss_pred             CccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCce
Confidence            777653 477777888888888888888877777777666666    7888888887665555443 3688888888888


Q ss_pred             cccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          755 SGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       755 ~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      ++.++..+..+++++.+++.+||+.|+|+
T Consensus       213 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          213 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             eecCHhHhcccccccEEEccCCcccccCC
Confidence            87777666778888888888888888664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=5.1e-24  Score=220.63  Aligned_cols=206  Identities=20%  Similarity=0.246  Sum_probs=124.2

Q ss_pred             CCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccC
Q 042603          498 CLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN  577 (874)
Q Consensus       498 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  577 (874)
                      ..+.+++++++++. +|..+. +++++|++++|+++++.+..|..+++|++|++++|+++...+..|.++++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCc-cCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            35667777776663 333222 4555666666655555555555555555555555555544444444555555555555


Q ss_pred             ccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEe
Q 042603          578 NYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTT  657 (874)
Q Consensus       578 n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  657 (874)
                      |++.+..+..+..++                                                                 
T Consensus        95 n~l~~~~~~~~~~l~-----------------------------------------------------------------  109 (270)
T 2o6q_A           95 NKLQALPIGVFDQLV-----------------------------------------------------------------  109 (270)
T ss_dssp             SCCCCCCTTTTTTCS-----------------------------------------------------------------
T ss_pred             CcCCcCCHhHccccc-----------------------------------------------------------------
Confidence            555443333344444                                                                 


Q ss_pred             cCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChh
Q 042603          658 KNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ  737 (874)
Q Consensus       658 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~  737 (874)
                                   +|+.|++++|.+++..|..|+.+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..
T Consensus       110 -------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  176 (270)
T 2o6q_A          110 -------------NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA  176 (270)
T ss_dssp             -------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             -------------CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH
Confidence                         4555555555555555555666667777777777777665566667777777777777777666666


Q ss_pred             hhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          738 LIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       738 l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      +..+++|+.|++++|++++.++..+..+++++.+++.+|||.|+|+
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            6667777777777777776666556666777777777777777553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=9.8e-24  Score=219.55  Aligned_cols=208  Identities=22%  Similarity=0.262  Sum_probs=141.7

Q ss_pred             CCCEEECcCCcCcccCCCCC-CCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEcc
Q 042603          498 CLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA  576 (874)
Q Consensus       498 ~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~  576 (874)
                      +|++|++++|++++..+..+ .+++|++|++++|+++++.+..|..+++|++|++++|++++..+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45566666666555444332 35566666666666666666666666777777777777766666667777777777777


Q ss_pred             CccCcccCCccccCCCCCCEEEccCCcCCC-CCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEE
Q 042603          577 NNYIEGEIPVQLCQLKEVRLIDLSHNNLSG-HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQF  655 (874)
Q Consensus       577 ~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (874)
                      +|.+.+..+..+..+++|+.|++++|.+++ .+|..+..                                         
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-----------------------------------------  147 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----------------------------------------  147 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence            777776666567777777777777777764 24554443                                         


Q ss_pred             EecCcccccccccccCcceEEcCCCcccccCCccccccccCC----eEecCCcccccchhhhccCCCCCCEEECCCCcCc
Q 042603          656 TTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIR----ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  731 (874)
Q Consensus       656 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  731 (874)
                                   +++|+.|++++|++++..+..+..+++|+    .|++++|++++..+..+.. .+|+.|++++|+++
T Consensus       148 -------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~  213 (276)
T 2z62_A          148 -------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK  213 (276)
T ss_dssp             -------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS
T ss_pred             -------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee
Confidence                         23677777777777766666777777766    7888888888666655544 37888888888888


Q ss_pred             ccCChhhhcCCCCCeEEccCCCCcccCCC
Q 042603          732 GKIPPQLIVLNTLAVFRVAYNNLSGKIPD  760 (874)
Q Consensus       732 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  760 (874)
                      +..+..+..+++|+.|++++|++.+..|.
T Consensus       214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          214 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             ecCHhHhcccccccEEEccCCcccccCCc
Confidence            77666677888888888888888876653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=5e-24  Score=222.35  Aligned_cols=208  Identities=24%  Similarity=0.264  Sum_probs=138.8

Q ss_pred             ccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcE
Q 042603          493 FCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSY  572 (874)
Q Consensus       493 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  572 (874)
                      +..+++++.+++++|.++. +|..+. +.++.|++++|++++..+..|..+++|++|++++|.+++              
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------------   69 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--------------   69 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--------------
T ss_pred             ccccCCccEEECCCCCCCc-CCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc--------------
Confidence            4456667777777777653 332221 455555555555555555555555555555555555543              


Q ss_pred             EEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccce
Q 042603          573 ILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEET  652 (874)
Q Consensus       573 L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  652 (874)
                                ..+.  ..+++|+.|++++|+++ .+|..+..                                      
T Consensus        70 ----------~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~--------------------------------------   98 (290)
T 1p9a_G           70 ----------LQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQT--------------------------------------   98 (290)
T ss_dssp             ----------EECC--SCCTTCCEEECCSSCCS-SCCCCTTT--------------------------------------
T ss_pred             ----------ccCC--CCCCcCCEEECCCCcCC-cCchhhcc--------------------------------------
Confidence                      2221  44555666666666554 33332211                                      


Q ss_pred             EEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc
Q 042603          653 VQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  732 (874)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  732 (874)
                                      +++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+|++
T Consensus        99 ----------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           99 ----------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             ----------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ----------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence                            2466777777777776666778888888888888888888777778888888888888888887


Q ss_pred             cCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          733 KIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       733 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      ..+..+..+++|+.|++++|+++. +|..+....+++.+++.||||.|+|.+
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             cCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCcCcc
Confidence            666677888888888888888884 455556677888888999999996643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4.4e-24  Score=221.28  Aligned_cols=207  Identities=22%  Similarity=0.263  Sum_probs=158.2

Q ss_pred             cCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEE
Q 042603          494 CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYI  573 (874)
Q Consensus       494 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  573 (874)
                      ..+++|+.|++++|.+. .++....+++|++|++++|++++.  ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            34555666666666654 333444466666666666666654  256777888888888888887777777888888888


Q ss_pred             EccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceE
Q 042603          574 LLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV  653 (874)
Q Consensus       574 ~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (874)
                      ++++|++++..+..+..+++|+.|++++|++++..|..+..                                       
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------------------------------  155 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK---------------------------------------  155 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------------------
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc---------------------------------------
Confidence            88888888777777788888888888888887443333322                                       


Q ss_pred             EEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCccc
Q 042603          654 QFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK  733 (874)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~  733 (874)
                                     +++|+.|++++|++++..+..++.+++|+.|+|++|++++..|..|+.+++|+.|++++|++.+.
T Consensus       156 ---------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          156 ---------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             ---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ---------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence                           34788899999999887788889999999999999999998888899999999999999999865


Q ss_pred             CChhhhcCCCCCeEEccCCCCcccCCCcccc
Q 042603          734 IPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQ  764 (874)
Q Consensus       734 ~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  764 (874)
                      .|       .|+.++++.|.++|.+|..++.
T Consensus       221 ~~-------~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          221 CP-------GIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             TT-------TTHHHHHHHHHTGGGBBCTTSC
T ss_pred             Cc-------HHHHHHHHHHhCCCcccCcccc
Confidence            44       5888899999999999986543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.1e-22  Score=210.69  Aligned_cols=129  Identities=22%  Similarity=0.251  Sum_probs=112.8

Q ss_pred             cCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCC-CCCcccEEEeeCcccCccchhhhhcCCCCcEEEcc
Q 042603          474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS  552 (874)
Q Consensus       474 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls  552 (874)
                      ..+.++++++.++. +|..+.  +++++|++++|++.+..+..+ .+++|++|++++|+++.+.+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            47889999999984 565543  689999999999997766555 48999999999999999999999999999999999


Q ss_pred             CccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCC
Q 042603          553 YNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS  605 (874)
Q Consensus       553 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (874)
                      +|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.++
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            99999887888899999999999999999887777888888888888887775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=4.2e-22  Score=207.78  Aligned_cols=202  Identities=24%  Similarity=0.251  Sum_probs=148.4

Q ss_pred             hhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCc
Q 042603          469 LGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLV  547 (874)
Q Consensus       469 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  547 (874)
                      +++++++++++++++.++. +|..+.  +.++.|++++|++++..+..+. +++|++|++++|.++++.+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            6678899999999999985 555443  6899999999999987766554 89999999999999987654  7889999


Q ss_pred             EEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCC
Q 042603          548 TLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAP  627 (874)
Q Consensus       548 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~  627 (874)
                      +|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..             
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------  146 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP-------------  146 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-------------
Confidence            9999999998 67777888888999999999888777777888888888888888776322221111             


Q ss_pred             CccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccc
Q 042603          628 TWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT  707 (874)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  707 (874)
                                                               +++|+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus       147 -----------------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          147 -----------------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             -----------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence                                                     235666666666666444445555666666666666666


Q ss_pred             cchhhhccCCCCCCEEECCCCcCc
Q 042603          708 GTIPTTFSNLKQIESLDLSYNLLH  731 (874)
Q Consensus       708 ~~~p~~~~~l~~L~~LdLs~N~l~  731 (874)
                       .+|..+..+.+|+.|+|++|++.
T Consensus       186 -~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          186 -TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             -ccChhhcccccCCeEEeCCCCcc
Confidence             44555555556666666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1e-22  Score=210.97  Aligned_cols=210  Identities=21%  Similarity=0.221  Sum_probs=150.2

Q ss_pred             hhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcE
Q 042603          469 LGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVT  548 (874)
Q Consensus       469 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  548 (874)
                      ...+++|+.|++++|.+...  ..+..+++|++|++++|++.+ ++....+++|++|++++|++++..+..|..+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            33455555555555555421  235556666666666666653 233344666777777777777666667777778888


Q ss_pred             EEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCC
Q 042603          549 LDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPT  628 (874)
Q Consensus       549 L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~  628 (874)
                      |++++|++++..+..++.+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..              
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------  179 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK--------------  179 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC--------------
Confidence            888888887766777777888888888888888776767778888888888888887443333222              


Q ss_pred             ccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCccccc
Q 042603          629 WDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG  708 (874)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  708 (874)
                                                              +++|+.|++++|++++..|..++.+++|+.|+|++|.+++
T Consensus       180 ----------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          180 ----------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ----------------------------------------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence                                                    3478888888888888888888899999999999998885


Q ss_pred             chhhhccCCCCCCEEECCCCcCcccCChhhhcCC
Q 042603          709 TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN  742 (874)
Q Consensus       709 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  742 (874)
                      .       +++|+.|+++.|.++|.+|..++.+.
T Consensus       220 ~-------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          220 T-------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             C-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             c-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            4       55788999999999999998876654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.8e-23  Score=226.43  Aligned_cols=67  Identities=16%  Similarity=0.212  Sum_probs=38.2

Q ss_pred             CcceEEcCCCcccccCC----ccccccccCCeEecCCcccccc-------hhhhccCCCCCCEEECCCCcCcccCChh
Q 042603          671 SMSGIDLSCNKLTGEIP----TQIGYLTRIRALNLSHNNLTGT-------IPTTFSNLKQIESLDLSYNLLHGKIPPQ  737 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~LdLs~N~l~~~~p~~  737 (874)
                      +|+.|||++|.+++..+    ..+..+++|++|+|++|.+++.       ++..+..+++|+.||+++|++.+..+..
T Consensus       226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred             CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence            56666666666654433    2234556666666666663332       2334556666677777777766554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.8e-23  Score=226.51  Aligned_cols=256  Identities=17%  Similarity=0.175  Sum_probs=170.6

Q ss_pred             EEccCCcCCCCCchhhhccccCCeeecCCCcccccCC----ccccCCC-CCCEEECcCCcCcccCCCCCC------CCcc
Q 042603          454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP----NEFCQLD-CLKVLDLSNNSIFGTLPSCLS------LGSI  522 (874)
Q Consensus       454 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~------~~~L  522 (874)
                      ++++.|.+++.+|..+...++|++|++++|.+.+..+    ..+..++ +|++|++++|++.+..+..+.      .++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3455555555555555555556666666666655444    4555555 566666666666544433222      1567


Q ss_pred             cEEEeeCcccCccchhh----hhcC-CCCcEEEccCccCCCCCchhhcC-----CCCCcEEEccCccCcccCC----ccc
Q 042603          523 EQVHLSKNKIEGQLESI----IHYY-PYLVTLDLSYNRLHGSIPNWIDK-----LPQLSYILLANNYIEGEIP----VQL  588 (874)
Q Consensus       523 ~~L~l~~n~i~~~~~~~----~~~l-~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n~~~~~~~----~~~  588 (874)
                      ++|++++|++++..+..    +..+ ++|++|++++|++++..+..+..     .++|++|++++|.+.+..+    ..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            77777777776665553    3333 77888888888887666554433     3588888888888875433    334


Q ss_pred             cCCC-CCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccc
Q 042603          589 CQLK-EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGR  667 (874)
Q Consensus       589 ~~l~-~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (874)
                      ..++ +|+.|++++|++++..+..+...-                                                  .
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--------------------------------------------------~  192 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFL--------------------------------------------------A  192 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------------------------H
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------------------------H
Confidence            4554 888999999988766655544321                                                  0


Q ss_pred             cc-cCcceEEcCCCccccc----CCccccc-cccCCeEecCCcccccchh----hhccCCCCCCEEECCCCcCcccCC--
Q 042603          668 IL-TSMSGIDLSCNKLTGE----IPTQIGY-LTRIRALNLSHNNLTGTIP----TTFSNLKQIESLDLSYNLLHGKIP--  735 (874)
Q Consensus       668 ~~-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~LdLs~N~l~~~~p--  735 (874)
                      .. ++|+.|||++|.+++.    ++..+.. .++|++|||++|.+++..+    ..+..+++|++|+|++|.+.+..+  
T Consensus       193 ~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~  272 (362)
T 3goz_A          193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ  272 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH
T ss_pred             hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHH
Confidence            01 3788999999998863    4555655 3599999999999998655    445778999999999999654433  


Q ss_pred             -----hhhhcCCCCCeEEccCCCCcccCC
Q 042603          736 -----PQLIVLNTLAVFRVAYNNLSGKIP  759 (874)
Q Consensus       736 -----~~l~~l~~L~~l~ls~N~l~~~~p  759 (874)
                           ..+..+++|+.|++++|++....+
T Consensus       273 ~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          273 CKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHHhccCCceEEEecCCCcCCCcch
Confidence                 356788889999999999886644

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.9e-23  Score=228.82  Aligned_cols=239  Identities=18%  Similarity=0.241  Sum_probs=156.3

Q ss_pred             hhhhccccCCeeecCCCcccccCC----ccccCCCCCCEEECcCCc---CcccCCCC--------CCCCcccEEEeeCcc
Q 042603          467 RWLGSLLALQDIIMPNNNLEGPIP----NEFCQLDCLKVLDLSNNS---IFGTLPSC--------LSLGSIEQVHLSKNK  531 (874)
Q Consensus       467 ~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~---l~~~~~~~--------~~~~~L~~L~l~~n~  531 (874)
                      ..+..+++|+.|++++|.+.+..+    ..+..+++|++|+|++|.   +.+.+|..        ..+++|++|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            334444444555555544443322    224445555555555542   22233321        135566666666666


Q ss_pred             cCc----cchhhhhcCCCCcEEEccCccCCCCCchhhc----CC---------CCCcEEEccCccCc-ccCC---ccccC
Q 042603          532 IEG----QLESIIHYYPYLVTLDLSYNRLHGSIPNWID----KL---------PQLSYILLANNYIE-GEIP---VQLCQ  590 (874)
Q Consensus       532 i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~~~-~~~~---~~~~~  590 (874)
                      +++    ..+..+..+++|++|+|++|.+++..+..+.    .+         ++|++|++++|++. +..+   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            665    3455667777777888877777644333333    33         77888888888876 3333   35667


Q ss_pred             CCCCCEEEccCCcCCCC-----CCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccc
Q 042603          591 LKEVRLIDLSHNNLSGH-----IPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYR  665 (874)
Q Consensus       591 l~~L~~L~Ls~N~l~~~-----~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (874)
                      +++|+.|++++|+++..     +|..+..                                                   
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~---------------------------------------------------  214 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAY---------------------------------------------------  214 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGG---------------------------------------------------
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhc---------------------------------------------------
Confidence            77888888888877521     1111111                                                   


Q ss_pred             cccccCcceEEcCCCccc----ccCCccccccccCCeEecCCcccccc----hhhhccC--CCCCCEEECCCCcCcc---
Q 042603          666 GRILTSMSGIDLSCNKLT----GEIPTQIGYLTRIRALNLSHNNLTGT----IPTTFSN--LKQIESLDLSYNLLHG---  732 (874)
Q Consensus       666 ~~~~~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~LdLs~N~l~~---  732 (874)
                         +++|+.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+..  +++|++|+|++|++++   
T Consensus       215 ---~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~  291 (386)
T 2ca6_A          215 ---CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  291 (386)
T ss_dssp             ---CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             ---CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence               357888888888885    56788888889999999999999876    5677743  8999999999999988   


Q ss_pred             -cCChhh-hcCCCCCeEEccCCCCcccCC
Q 042603          733 -KIPPQL-IVLNTLAVFRVAYNNLSGKIP  759 (874)
Q Consensus       733 -~~p~~l-~~l~~L~~l~ls~N~l~~~~p  759 (874)
                       .+|..+ .++++|+.|++++|++++..|
T Consensus       292 ~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          292 RTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             477777 668999999999999987764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.1e-21  Score=198.46  Aligned_cols=183  Identities=20%  Similarity=0.198  Sum_probs=145.7

Q ss_pred             CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEc
Q 042603          520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL  599 (874)
Q Consensus       520 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  599 (874)
                      ...++++++++.++.++....   ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            456788888888887654332   57888899999888888888888888999999988888888878888888888888


Q ss_pred             cCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCC
Q 042603          600 SHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSC  679 (874)
Q Consensus       600 s~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  679 (874)
                      ++|++++..|..+..                                                      +++|+.|+|++
T Consensus        91 ~~n~l~~~~~~~~~~------------------------------------------------------l~~L~~L~L~~  116 (251)
T 3m19_A           91 ANNQLASLPLGVFDH------------------------------------------------------LTQLDKLYLGG  116 (251)
T ss_dssp             TTSCCCCCCTTTTTT------------------------------------------------------CTTCCEEECCS
T ss_pred             CCCcccccChhHhcc------------------------------------------------------cCCCCEEEcCC
Confidence            888887443333322                                                      34788888888


Q ss_pred             CcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCC
Q 042603          680 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP  759 (874)
Q Consensus       680 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  759 (874)
                      |++++..+..|..+++|++|+|++|++++..+..|+.+++|++|||++|++++..|..+..+++|+.|++++|++.+...
T Consensus       117 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            88887777777888888888888888887777788888888888888888887777788888888888888888877643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=9.2e-22  Score=199.73  Aligned_cols=196  Identities=14%  Similarity=0.144  Sum_probs=112.8

Q ss_pred             cccEEEeeCcccCccchhhhhcCCCCcEEEccCcc-CCCCCchhhcCCCCCcEEEccC-ccCcccCCccccCCCCCCEEE
Q 042603          521 SIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNR-LHGSIPNWIDKLPQLSYILLAN-NYIEGEIPVQLCQLKEVRLID  598 (874)
Q Consensus       521 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~  598 (874)
                      ++++|++++|+++++.+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            55555555555555555555566666666666664 5544444556666666666665 666655555566666666666


Q ss_pred             ccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcc---eE
Q 042603          599 LSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMS---GI  675 (874)
Q Consensus       599 Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L  675 (874)
                      +++|++++ +|. +..                                                      +++|+   .|
T Consensus       112 l~~n~l~~-lp~-~~~------------------------------------------------------l~~L~~L~~L  135 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTK------------------------------------------------------VYSTDIFFIL  135 (239)
T ss_dssp             EEEECCCS-CCC-CTT------------------------------------------------------CCBCCSEEEE
T ss_pred             CCCCCCcc-ccc-ccc------------------------------------------------------ccccccccEE
Confidence            66666553 332 211                                                      11333   66


Q ss_pred             EcCCC-cccccCCccccccccCC-eEecCCcccccchhhhccCCCCCCEEECCCCc-CcccCChhhhcC-CCCCeEEccC
Q 042603          676 DLSCN-KLTGEIPTQIGYLTRIR-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL-LHGKIPPQLIVL-NTLAVFRVAY  751 (874)
Q Consensus       676 ~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~-l~~~~p~~l~~l-~~L~~l~ls~  751 (874)
                      ++++| .+++..+..|..+++|+ .|++++|+++...+..|.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++
T Consensus       136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             EEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             ECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence            66666 66655555566666666 6666666666433344444 666666666664 665555666666 6666666666


Q ss_pred             CCCcccCCCccccCCCCCcccccCC
Q 042603          752 NNLSGKIPDRVAQFSTFEEDSYEGN  776 (874)
Q Consensus       752 N~l~~~~p~~~~~~~~l~~~~~~gN  776 (874)
                      |++++.++.   .++.++.+.+.++
T Consensus       215 N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          215 TSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CccccCChh---HhccCceeeccCc
Confidence            666654333   3445555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=2.2e-22  Score=212.94  Aligned_cols=109  Identities=17%  Similarity=0.176  Sum_probs=54.5

Q ss_pred             CCCCEEECcCCcCcccCCCCC---CCCcccEEEeeCcccCccch----hhhhcCCCCcEEEccCccCCCCCchhhcCCCC
Q 042603          497 DCLKVLDLSNNSIFGTLPSCL---SLGSIEQVHLSKNKIEGQLE----SIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQ  569 (874)
Q Consensus       497 ~~L~~L~L~~n~l~~~~~~~~---~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  569 (874)
                      ++|++|++++|++.+..|..+   .+++|++|++++|++++..+    ..+..+++|++|++++|++.+..|..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            446666666666655555442   25555555555555554322    22334555555555555555544455555555


Q ss_pred             CcEEEccCccCccc--C--CccccCCCCCCEEEccCCcCC
Q 042603          570 LSYILLANNYIEGE--I--PVQLCQLKEVRLIDLSHNNLS  605 (874)
Q Consensus       570 L~~L~l~~n~~~~~--~--~~~~~~l~~L~~L~Ls~N~l~  605 (874)
                      |++|++++|++.+.  .  +..+..+++|+.|++++|+++
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  210 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME  210 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence            55555555554331  1  112234455555555555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=2.4e-22  Score=215.92  Aligned_cols=250  Identities=16%  Similarity=0.217  Sum_probs=161.0

Q ss_pred             CCeEEccCCcCCCCCchhhhcc--ccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc-CCCCC-CCCcccEEE
Q 042603          451 LGGLYLSDNHLSGKIPRWLGSL--LALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT-LPSCL-SLGSIEQVH  526 (874)
Q Consensus       451 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~-~~~~L~~L~  526 (874)
                      ++.+++++|.+.   +..+..+  ++++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+ .+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            444555555443   3344444  5566666666666554443 33556666666666665543 33322 256666777


Q ss_pred             eeCcccCccchhhhhcCCCCcEEEccCc-cCCCC-CchhhcCCCCCcEEEccCc-cCccc-CCccccCCC-CCCEEEccC
Q 042603          527 LSKNKIEGQLESIIHYYPYLVTLDLSYN-RLHGS-IPNWIDKLPQLSYILLANN-YIEGE-IPVQLCQLK-EVRLIDLSH  601 (874)
Q Consensus       527 l~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~Ls~  601 (874)
                      +++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            7777666666666777777777777777 56542 4555677777777777777 77653 455567777 788888887


Q ss_pred             C--cCC-CCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcC
Q 042603          602 N--NLS-GHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLS  678 (874)
Q Consensus       602 N--~l~-~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  678 (874)
                      |  .++ +.+|..+..                                                      +++|+.|+++
T Consensus       205 ~~~~~~~~~l~~~~~~------------------------------------------------------~~~L~~L~l~  230 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRR------------------------------------------------------CPNLVHLDLS  230 (336)
T ss_dssp             CGGGSCHHHHHHHHHH------------------------------------------------------CTTCSEEECT
T ss_pred             CcccCCHHHHHHHHhh------------------------------------------------------CCCCCEEeCC
Confidence            7  343 223332222                                                      3478888888


Q ss_pred             CCc-ccccCCccccccccCCeEecCCcc-cccchhhhccCCCCCCEEECCCCcCcccCChhhhcC-CCCCeEEccCCCCc
Q 042603          679 CNK-LTGEIPTQIGYLTRIRALNLSHNN-LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-NTLAVFRVAYNNLS  755 (874)
Q Consensus       679 ~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~l~ls~N~l~  755 (874)
                      +|. +++..+..++.+++|+.|++++|. ++......++++++|+.|++++| ++..   .+..+ ..+..|++++|+++
T Consensus       231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~  306 (336)
T 2ast_B          231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFT  306 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSC
T ss_pred             CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCc
Confidence            888 777777788888899999999885 33333336788899999999988 4332   33333 23666778899998


Q ss_pred             ccCCCcc
Q 042603          756 GKIPDRV  762 (874)
Q Consensus       756 ~~~p~~~  762 (874)
                      +..|..+
T Consensus       307 ~~~~~~~  313 (336)
T 2ast_B          307 TIARPTI  313 (336)
T ss_dssp             CTTCSSC
T ss_pred             cccCCcc
Confidence            8888753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=4e-23  Score=226.23  Aligned_cols=188  Identities=20%  Similarity=0.226  Sum_probs=131.6

Q ss_pred             cCCCCCCEEECcCCcCcc----cCCCCC-CCCcccEEEeeCcccCccchhhh----hcC---------CCCcEEEccCcc
Q 042603          494 CQLDCLKVLDLSNNSIFG----TLPSCL-SLGSIEQVHLSKNKIEGQLESII----HYY---------PYLVTLDLSYNR  555 (874)
Q Consensus       494 ~~l~~L~~L~L~~n~l~~----~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~----~~l---------~~L~~L~Ls~n~  555 (874)
                      ..+++|++|+|++|++.+    .++..+ .+++|++|++++|.++...+..+    ..+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            456666666666666654    122222 25666677777776654433333    233         788888888888


Q ss_pred             CC-CCCc---hhhcCCCCCcEEEccCccCcc-----cCCccccCCCCCCEEEccCCcCC----CCCCchhhccccccccc
Q 042603          556 LH-GSIP---NWIDKLPQLSYILLANNYIEG-----EIPVQLCQLKEVRLIDLSHNNLS----GHIPPCLVNTALSEGYY  622 (874)
Q Consensus       556 l~-~~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~~~~~~~~~  622 (874)
                      ++ +.++   ..+..+++|++|++++|++..     ..+..+..+++|+.|+|++|.++    +.+|..+..        
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~--------  242 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS--------  242 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG--------
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc--------
Confidence            76 3344   356677888888888888762     23446778888888888888875    334443332        


Q ss_pred             cCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccccc----CCcccc--ccccC
Q 042603          623 DAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE----IPTQIG--YLTRI  696 (874)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L  696 (874)
                                                                    +++|+.|+|++|.+++.    +|..+.  .+++|
T Consensus       243 ----------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L  276 (386)
T 2ca6_A          243 ----------------------------------------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL  276 (386)
T ss_dssp             ----------------------------------------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred             ----------------------------------------------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe
Confidence                                                          34788888998888865    566663  48999


Q ss_pred             CeEecCCccccc----chhhhc-cCCCCCCEEECCCCcCcccCC
Q 042603          697 RALNLSHNNLTG----TIPTTF-SNLKQIESLDLSYNLLHGKIP  735 (874)
Q Consensus       697 ~~L~Ls~N~l~~----~~p~~~-~~l~~L~~LdLs~N~l~~~~p  735 (874)
                      +.|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       277 ~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999999999998    478777 678999999999999998774

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=6.8e-21  Score=194.71  Aligned_cols=182  Identities=22%  Similarity=0.262  Sum_probs=147.4

Q ss_pred             CCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEcc
Q 042603          497 DCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA  576 (874)
Q Consensus       497 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~  576 (874)
                      ...++++++++.+. .+|..+. +.++.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCcc-ccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            35678888888887 4444333 578889999999888888888888899999999999888888888888899999999


Q ss_pred             CccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEE
Q 042603          577 NNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFT  656 (874)
Q Consensus       577 ~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (874)
                      +|++++..+..+..+++|+.|++++|++++..+..+..                                          
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------  129 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR------------------------------------------  129 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------------
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc------------------------------------------
Confidence            99988777778888889999999999887433322222                                          


Q ss_pred             ecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccC
Q 042603          657 TKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI  734 (874)
Q Consensus       657 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~  734 (874)
                                  +++|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..|..+++|+.|+|++|++++..
T Consensus       130 ------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          130 ------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             ------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             ------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence                        347888999999988777778888889999999999998888888888889999999999888653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=4.5e-21  Score=194.65  Aligned_cols=195  Identities=15%  Similarity=0.181  Sum_probs=118.1

Q ss_pred             CCCEEECcCCcCcccCCCCC-CCCcccEEEeeCcc-cCccchhhhhcCCCCcEEEccC-ccCCCCCchhhcCCCCCcEEE
Q 042603          498 CLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNK-IEGQLESIIHYYPYLVTLDLSY-NRLHGSIPNWIDKLPQLSYIL  574 (874)
Q Consensus       498 ~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~  574 (874)
                      ++++|++++|++++..+..+ .+++|++|++++|+ ++++.+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555554444333 25555555555554 5555555566666666666665 666655555566666666666


Q ss_pred             ccCccCcccCCccccCCCCCC---EEEccCC-cCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCcc
Q 042603          575 LANNYIEGEIPVQLCQLKEVR---LIDLSHN-NLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKE  650 (874)
Q Consensus       575 l~~n~~~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  650 (874)
                      +++|++++ +|. +..+++|+   .|++++| .+++..+..+..                                    
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~------------------------------------  153 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG------------------------------------  153 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT------------------------------------
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc------------------------------------
Confidence            66666664 443 55666665   6666666 555322222221                                    


Q ss_pred             ceEEEEecCcccccccccccCcc-eEEcCCCcccccCCccccccccCCeEecCCcc-cccchhhhccCC-CCCCEEECCC
Q 042603          651 ETVQFTTKNMSYYYRGRILTSMS-GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN-LTGTIPTTFSNL-KQIESLDLSY  727 (874)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~LdLs~  727 (874)
                                        +++|+ .|++++|+++...+..+.. ++|+.|+|++|+ +++..+..|.++ ++|+.||+++
T Consensus       154 ------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          154 ------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             ------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             ------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence                              23666 7777777777333333444 778888888884 877767778888 8888888888


Q ss_pred             CcCcccCChhhhcCCCCCeEEccCC
Q 042603          728 NLLHGKIPPQLIVLNTLAVFRVAYN  752 (874)
Q Consensus       728 N~l~~~~p~~l~~l~~L~~l~ls~N  752 (874)
                      |++++..+.   .+++|+.|+++++
T Consensus       215 N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          215 TSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CccccCChh---HhccCceeeccCc
Confidence            888754333   5667777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.4e-20  Score=198.48  Aligned_cols=192  Identities=18%  Similarity=0.311  Sum_probs=108.0

Q ss_pred             CCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEc
Q 042603          496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL  575 (874)
Q Consensus       496 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  575 (874)
                      +++|+.|++++|.+.. ++....+++|++|++++|++++..+  +..+++|++|++++|++++. + .+..+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred             cCCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence            3344444444444432 2333334455555555555554443  55555666666666665532 2 3555666666666


Q ss_pred             cCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEE
Q 042603          576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQF  655 (874)
Q Consensus       576 ~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (874)
                      ++|++++. + .+..+++|+.|++++|.+++. |. +..                                         
T Consensus       115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~-----------------------------------------  149 (308)
T 1h6u_A          115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAG-----------------------------------------  149 (308)
T ss_dssp             TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGG-----------------------------------------
T ss_pred             CCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccC-----------------------------------------
Confidence            66666543 2 255666666666666666532 11 111                                         


Q ss_pred             EecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCC
Q 042603          656 TTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP  735 (874)
Q Consensus       656 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  735 (874)
                                   +++|+.|++++|++++..+  +..+++|+.|+|++|++++..+  +..+++|++|+|++|++++..|
T Consensus       150 -------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          150 -------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             -------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred             -------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc
Confidence                         2366666666666664332  6666777777777777765543  6667777777777777765542


Q ss_pred             hhhhcCCCCCeEEccCCCCcc
Q 042603          736 PQLIVLNTLAVFRVAYNNLSG  756 (874)
Q Consensus       736 ~~l~~l~~L~~l~ls~N~l~~  756 (874)
                        +..+++|+.|++++|++++
T Consensus       213 --l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          213 --LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             --GTTCTTCCEEEEEEEEEEC
T ss_pred             --ccCCCCCCEEEccCCeeec
Confidence              6667777777777777665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=7.6e-21  Score=201.09  Aligned_cols=225  Identities=17%  Similarity=0.166  Sum_probs=152.3

Q ss_pred             cccEEEccCCcCCccCChhhh--cCCCCCcEEEccCCcCCcccchhc--cCCCCcCEEEcccCcCCCCch---hHHHhcC
Q 042603          328 KLATLDVSNNFFLGHIPVEIG--TYLPGLMHLNLSRNAFNGSIPSSF--ADMKMLKSLDISYNQLTGAIP---ERMAMGC  400 (874)
Q Consensus       328 ~L~~L~Ls~n~l~~~i~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~---~~~~~~~  400 (874)
                      .++.+.+.++.+....-..+.  ..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+   ......+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            456667766655421111111  113579999999999988888887  888999999999999886544   2222368


Q ss_pred             CCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCccc--C--CccccccCCCCeEEccCCcCCCCCch----hhhcc
Q 042603          401 FSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGE--I--PESLSKCYLLGGLYLSDNHLSGKIPR----WLGSL  472 (874)
Q Consensus       401 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l  472 (874)
                      ++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .  +..+..+++|++|++++|+++. ++.    .++.+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence            8899999999999888888888889999999999987642  1  2234577888888888888863 333    24667


Q ss_pred             ccCCeeecCCCcccccCCccccCC---CCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEE
Q 042603          473 LALQDIIMPNNNLEGPIPNEFCQL---DCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTL  549 (874)
Q Consensus       473 ~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  549 (874)
                      ++|++|++++|++.+..|..+..+   ++|++|++++|+++ .+|..+. ++|+.|++++|+++++..  +..+++|+.|
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L  299 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRAPQ--PDELPEVDNL  299 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSCCC--TTSCCCCSCE
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCCch--hhhCCCccEE
Confidence            888888888888877766666555   57777777777776 4444332 455666666665555421  3445555555


Q ss_pred             EccCccCC
Q 042603          550 DLSYNRLH  557 (874)
Q Consensus       550 ~Ls~n~l~  557 (874)
                      ++++|+++
T Consensus       300 ~L~~N~l~  307 (310)
T 4glp_A          300 TLDGNPFL  307 (310)
T ss_dssp             ECSSTTTS
T ss_pred             ECcCCCCC
Confidence            55555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.9e-21  Score=208.80  Aligned_cols=245  Identities=18%  Similarity=0.198  Sum_probs=200.9

Q ss_pred             cCCeeecCCCcccccCCccccCC--CCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCcc-chhhhhcCCCCcEEE
Q 042603          474 ALQDIIMPNNNLEGPIPNEFCQL--DCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQ-LESIIHYYPYLVTLD  550 (874)
Q Consensus       474 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~  550 (874)
                      .++.++++++.+.   +..+..+  +.++.|++++|.+.+..+..+.+++|++|++++|.+++. .+..+..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            4789999999876   4556666  899999999999999888888899999999999999876 788899999999999


Q ss_pred             ccCccCCCCCchhhcCCCCCcEEEccCc-cCccc-CCccccCCCCCCEEEccCC-cCCCC-CCchhhccccccccccCCC
Q 042603          551 LSYNRLHGSIPNWIDKLPQLSYILLANN-YIEGE-IPVQLCQLKEVRLIDLSHN-NLSGH-IPPCLVNTALSEGYYDAVA  626 (874)
Q Consensus       551 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~~~~~~~~~~~~~  626 (874)
                      +++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|+.|++++| .+++. +|..+..            
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~------------  192 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH------------  192 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH------------
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh------------
Confidence            9999999888889999999999999999 67753 6667889999999999999 88743 2332222            


Q ss_pred             CCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc-CcceEEcCCC--ccc-ccCCccccccccCCeEecC
Q 042603          627 PTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT-SMSGIDLSCN--KLT-GEIPTQIGYLTRIRALNLS  702 (874)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~Ls  702 (874)
                                                                ++ +|++|++++|  .++ +.+|..+..+++|+.|+++
T Consensus       193 ------------------------------------------l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~  230 (336)
T 2ast_B          193 ------------------------------------------VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  230 (336)
T ss_dssp             ------------------------------------------SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             ------------------------------------------cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence                                                      45 8999999999  565 4677888899999999999


Q ss_pred             Ccc-cccchhhhccCCCCCCEEECCCCc-CcccCChhhhcCCCCCeEEccCCCCcccCCCccccCC-CCCcccccCCCCC
Q 042603          703 HNN-LTGTIPTTFSNLKQIESLDLSYNL-LHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFL  779 (874)
Q Consensus       703 ~N~-l~~~~p~~~~~l~~L~~LdLs~N~-l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~-~l~~~~~~gNp~~  779 (874)
                      +|. +++..+..+.++++|++|++++|. +.......+..+++|+.|++++| +.   ..++..+. .++.+.+.+|...
T Consensus       231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~  306 (336)
T 2ast_B          231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFT  306 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSC
T ss_pred             CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCc
Confidence            999 888888899999999999999995 33332236889999999999999 32   22344443 3667777666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=9.9e-20  Score=191.87  Aligned_cols=192  Identities=20%  Similarity=0.339  Sum_probs=160.9

Q ss_pred             CCCCCEEecCCCCCCCCchhhhccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCC
Q 042603            4 FTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMAS   83 (874)
Q Consensus         4 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~   83 (874)
                      +++|++|+++++.+.  .+ +.+..+++|++|++++|.+.+.. +  +..+++|++|++++|.+.....     +..+++
T Consensus        40 l~~L~~L~l~~~~i~--~l-~~~~~l~~L~~L~L~~n~i~~~~-~--~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~  108 (308)
T 1h6u_A           40 LDGITTLSAFGTGVT--TI-EGVQYLNNLIGLELKDNQITDLA-P--LKNLTKITELELSGNPLKNVSA-----IAGLQS  108 (308)
T ss_dssp             HHTCCEEECTTSCCC--CC-TTGGGCTTCCEEECCSSCCCCCG-G--GTTCCSCCEEECCSCCCSCCGG-----GTTCTT
T ss_pred             cCCcCEEEeeCCCcc--Cc-hhhhccCCCCEEEccCCcCCCCh-h--HccCCCCCEEEccCCcCCCchh-----hcCCCC
Confidence            578999999999873  23 46888999999999999887543 2  8899999999999998874433     788999


Q ss_pred             CCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEc
Q 042603           84 LRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI  163 (874)
Q Consensus        84 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  163 (874)
                      |++|++++|.++..    ..+..+++|++|++++|.+++..+  +.++++|++|++++|.+++. +. +..+++|++|++
T Consensus       109 L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l  180 (308)
T 1h6u_A          109 IKTLDLTSTQITDV----TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKA  180 (308)
T ss_dssp             CCEEECTTSCCCCC----GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEEC
T ss_pred             CCEEECCCCCCCCc----hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEEC
Confidence            99999999999873    248899999999999999987655  88899999999999999854 43 889999999999


Q ss_pred             cCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEcccccccc
Q 042603          164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQI  219 (874)
Q Consensus       164 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~  219 (874)
                      ++|.+++..+  +..+++|++|++++|++++ ++  .+..+++|++|++++|++++
T Consensus       181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          181 DDNKISDISP--LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CCCccCcChh--hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeeec
Confidence            9999986544  8899999999999999986 44  37889999999999998864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=4.2e-20  Score=208.59  Aligned_cols=188  Identities=24%  Similarity=0.370  Sum_probs=126.2

Q ss_pred             cCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccC
Q 042603          474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY  553 (874)
Q Consensus       474 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~  553 (874)
                      +++.|++++|.+++ +|..+  .++|+.|++++|+++ .+|  ..+++|+.|++++|++++++.  +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence            78888888888876 55544  367888888888877 455  235677778887777777443  433  777777777


Q ss_pred             ccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccC
Q 042603          554 NRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHAS  633 (874)
Q Consensus       554 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~  633 (874)
                      |++++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|. +.                    
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--------------------  179 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--------------------  179 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--------------------
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--------------------
Confidence            77775 444   56777777777777775 444   46677777777777764 443 21                    


Q ss_pred             CCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccC-------CeEecCCccc
Q 042603          634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI-------RALNLSHNNL  706 (874)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l  706 (874)
                                                          ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|
T Consensus       180 ------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          180 ------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             ------------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred             ------------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence                                                26677777777777 5555 543  56       7777777777


Q ss_pred             ccchhhhccCCCCCCEEECCCCcCcccCChhhhcCC
Q 042603          707 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN  742 (874)
Q Consensus       707 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  742 (874)
                      + .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus       220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            7 4566666677777777777777777777666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.4e-19  Score=192.92  Aligned_cols=242  Identities=19%  Similarity=0.144  Sum_probs=170.0

Q ss_pred             cEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCE-EEc
Q 042603          330 ATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEI-LAL  408 (874)
Q Consensus       330 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~-L~L  408 (874)
                      ++++.+++.++ .+|..+   .+++++|++++|+|+.+.+.+|.++++|++|++++|++.+.+|...+.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46778888887 788765   3588999999999986666788889999999999998876777766666666654 455


Q ss_pred             ccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccccc
Q 042603          409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGP  488 (874)
Q Consensus       409 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  488 (874)
                      +.|+++...+..|..+++|++|++++|++....+..+.....+..+++.++                       +++...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            566776666666666666666666666665444444434444444444332                       334333


Q ss_pred             CCccccCCC-CCCEEECcCCcCcccCCCCCCCCcccEEEeeC-cccCccchhhhhcCCCCcEEEccCccCCCCCchhhcC
Q 042603          489 IPNEFCQLD-CLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSK-NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDK  566 (874)
Q Consensus       489 ~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  566 (874)
                      .+..|..+. .++.|++++|+++...+..+...+|+++++.+ |.++.+.+.+|..+++|++||+++|+++...+..   
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---  221 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---  221 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence            344454543 57788888888887666777777888888874 6788787888999999999999999999544444   


Q ss_pred             CCCCcEEEccCccCcccCCccccCCCCCCEEEccCC
Q 042603          567 LPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN  602 (874)
Q Consensus       567 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N  602 (874)
                      +.+|+.|.+.++.-...+| .+..+++|+.++++++
T Consensus       222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4556666665555444666 4788999999998754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=1.2e-19  Score=180.92  Aligned_cols=114  Identities=22%  Similarity=0.281  Sum_probs=86.4

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      +|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..+..+++|+.|+++
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            55566666666666667777777778888888888776666667777888888888888877777777778888888888


Q ss_pred             CCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      +|++++..+..+..+++++.+++.+|||.|+|++
T Consensus       137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            8888777777677777788888888888886654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=5.8e-19  Score=189.95  Aligned_cols=238  Identities=18%  Similarity=0.141  Sum_probs=158.7

Q ss_pred             CEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcE-EEc
Q 042603          281 NNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMH-LNL  359 (874)
Q Consensus       281 ~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~-L~l  359 (874)
                      +.+++++++++ .+|..++   +++++|+|++|+++.+.+..|.++++|++|+|++|++.+.+|...|..++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56778888887 7887653   578999999999998888889999999999999999877788888877887765 566


Q ss_pred             cCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEccc-CcccccCCccccCCC-CCCeEEccCCcC
Q 042603          360 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN-NTLQGHIFSEKFNLT-NLKRLQLDGNKF  437 (874)
Q Consensus       360 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l  437 (874)
                      .+|++++..|..|..+++|++|++++|+++ .++...+....++..+++.+ +.+....+..+..+. .++.|++++|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            778898888889999999999999999998 45544444455677777765 456655555555543 466777777777


Q ss_pred             cccCCccccccCCCCeEEccC-CcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCC
Q 042603          438 IGEIPESLSKCYLLGGLYLSD-NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSC  516 (874)
Q Consensus       438 ~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  516 (874)
                      +...+..+ ...+|+++++++ |.++...+..|..+++|+.|++++|+++...+..   +.+|+.|.+.++.-...+|..
T Consensus       167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l  242 (350)
T 4ay9_X          167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTL  242 (350)
T ss_dssp             CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCT
T ss_pred             cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCc
Confidence            64433333 345666666654 4444333345666666666666666666443333   234444444443333334433


Q ss_pred             CCCCcccEEEe
Q 042603          517 LSLGSIEQVHL  527 (874)
Q Consensus       517 ~~~~~L~~L~l  527 (874)
                      ..+++|+.+++
T Consensus       243 ~~l~~L~~l~l  253 (350)
T 4ay9_X          243 EKLVALMEASL  253 (350)
T ss_dssp             TTCCSCCEEEC
T ss_pred             hhCcChhhCcC
Confidence            33333333333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=2.3e-19  Score=177.70  Aligned_cols=160  Identities=21%  Similarity=0.226  Sum_probs=108.5

Q ss_pred             CCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccccccccc
Q 042603          544 PYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYD  623 (874)
Q Consensus       544 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~  623 (874)
                      ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..         
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------   98 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK---------   98 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC---------
Confidence            34555555555555444445555666666666666665544445566666666666666665322222221         


Q ss_pred             CCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCC
Q 042603          624 AVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH  703 (874)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  703 (874)
                                                                   +++|+.|++++|++++..+..|..+++|++|+|++
T Consensus        99 ---------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A           99 ---------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ---------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence                                                         24677777777777766666778888888999999


Q ss_pred             cccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCcccc
Q 042603          704 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQ  764 (874)
Q Consensus       704 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  764 (874)
                      |++++..+..|..+++|++|++++|++.+.       ++.|+.|+++.|+++|.+|..++.
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             CccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCcc
Confidence            988887777788889999999999988754       346788888999999988876543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=3e-19  Score=201.68  Aligned_cols=195  Identities=23%  Similarity=0.276  Sum_probs=113.1

Q ss_pred             CCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeC
Q 042603          450 LLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSK  529 (874)
Q Consensus       450 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~  529 (874)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.++ .+|   ..+++|+.|++++|++++ +|. +. .+|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence            66666666666664 44433  256666666666666 344   335666666666666665 444 22 2666666666


Q ss_pred             cccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCC
Q 042603          530 NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP  609 (874)
Q Consensus       530 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  609 (874)
                      |+++++++    .+++|+.|++++|++++ +|.   .+++|++|++++|++++ +|. +.  ++|+.|++++|+++ .+|
T Consensus       130 N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          130 NQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence            66666433    45666666666666664 443   45666666666666664 444 44  66666666666665 444


Q ss_pred             chhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCcc
Q 042603          610 PCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQ  689 (874)
Q Consensus       610 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~  689 (874)
                      . +.. .+                                                ....+.++.|+|++|.|+ .+|..
T Consensus       197 ~-~~~-~L------------------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~  225 (571)
T 3cvr_A          197 A-VPV-RN------------------------------------------------HHSEETEIFFRCRENRIT-HIPEN  225 (571)
T ss_dssp             C-CC---------------------------------------------------------CCEEEECCSSCCC-CCCGG
T ss_pred             h-HHH-hh------------------------------------------------hcccccceEEecCCCcce-ecCHH
Confidence            3 211 00                                                000123466666666666 45666


Q ss_pred             ccccccCCeEecCCcccccchhhhccCCC
Q 042603          690 IGYLTRIRALNLSHNNLTGTIPTTFSNLK  718 (874)
Q Consensus       690 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  718 (874)
                      +..+++|+.|+|++|.+++.+|..+..++
T Consensus       226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          226 ILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             GGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            66666666666666666666666665543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=3.3e-19  Score=177.67  Aligned_cols=113  Identities=19%  Similarity=0.254  Sum_probs=68.1

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      +|+.|+|++|++++..+..|+.+++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..+..+++|+.|+++
T Consensus        58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A           58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred             CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence            45555555555555555556666666666666666665555556666666666666666666556666666666666666


Q ss_pred             CCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      +|++++.+|..+..+++++.+++.+|||.|+|+
T Consensus       138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          138 DNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            666666656555556666666666666666544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=1.4e-19  Score=195.45  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=63.0

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhh---hcCCCCCeE
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL---IVLNTLAVF  747 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l---~~l~~L~~l  747 (874)
                      +|+.|+|++|+|++..+..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+   ..+++|+.|
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence            44445555555554444455556666666666666665555666666666666666666664333333   345666666


Q ss_pred             EccCCCCcccCCCccccCCC--CCcccccCCCCCCCCC
Q 042603          748 RVAYNNLSGKIPDRVAQFST--FEEDSYEGNPFLCGLP  783 (874)
Q Consensus       748 ~ls~N~l~~~~p~~~~~~~~--l~~~~~~gNp~~C~~~  783 (874)
                      ++++|+|++..+..+..++.  +..+++.||||.|+|.
T Consensus       169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             ECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            66666666544444444443  2556677777777664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=6.3e-19  Score=174.51  Aligned_cols=84  Identities=24%  Similarity=0.249  Sum_probs=34.2

Q ss_pred             CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEc
Q 042603          520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL  599 (874)
Q Consensus       520 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  599 (874)
                      ++|++|++++|+++++.+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence            33333333333333333333344444444444444444333333444444444444444444333333344444444444


Q ss_pred             cCCc
Q 042603          600 SHNN  603 (874)
Q Consensus       600 s~N~  603 (874)
                      ++|+
T Consensus       156 ~~N~  159 (208)
T 2o6s_A          156 HDNP  159 (208)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            4443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=2.4e-18  Score=172.63  Aligned_cols=110  Identities=23%  Similarity=0.310  Sum_probs=54.4

Q ss_pred             cceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccC
Q 042603          672 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAY  751 (874)
Q Consensus       672 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~  751 (874)
                      |+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|++++
T Consensus        66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~  144 (229)
T 3e6j_A           66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ  144 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCS
T ss_pred             CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCC
Confidence            333444444443333333444555555555555555444444555555555555555555 4444555555555555555


Q ss_pred             CCCcccCCCccccCCCCCcccccCCCCCCCC
Q 042603          752 NNLSGKIPDRVAQFSTFEEDSYEGNPFLCGL  782 (874)
Q Consensus       752 N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~  782 (874)
                      |++++..+..+..+++++.+++.|||+.|+|
T Consensus       145 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          145 NQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            5555444444444555555555555555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=4.6e-18  Score=169.35  Aligned_cols=89  Identities=20%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      +|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|+.|+++
T Consensus        82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            56666666666666666667777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCcccCC
Q 042603          751 YNNLSGKIP  759 (874)
Q Consensus       751 ~N~l~~~~p  759 (874)
                      +|++.+..+
T Consensus       162 ~N~l~c~c~  170 (220)
T 2v70_A          162 ANPFNCNCY  170 (220)
T ss_dssp             SCCEECSGG
T ss_pred             CcCCcCCCc
Confidence            777765544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=8.2e-18  Score=175.46  Aligned_cols=82  Identities=26%  Similarity=0.385  Sum_probs=58.1

Q ss_pred             cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603          670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV  749 (874)
Q Consensus       670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l  749 (874)
                      ++|+.|++++|++++.  ..++.+++|+.|+|++|++++..|  +..+++|+.|++++|++++. | .+..+++|+.|++
T Consensus       134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l  207 (291)
T 1h6t_A          134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLEL  207 (291)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEE
T ss_pred             CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence            3666666777766643  456777777777777777776655  77777777888887777753 3 3777777888888


Q ss_pred             cCCCCccc
Q 042603          750 AYNNLSGK  757 (874)
Q Consensus       750 s~N~l~~~  757 (874)
                      ++|+++..
T Consensus       208 ~~n~i~~~  215 (291)
T 1h6t_A          208 FSQECLNK  215 (291)
T ss_dssp             EEEEEECC
T ss_pred             cCCcccCC
Confidence            87777653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=6.3e-18  Score=168.31  Aligned_cols=86  Identities=21%  Similarity=0.200  Sum_probs=51.3

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      +|+.|+|++|+|++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..+..+++|+.|+++
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B           81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence            44555555555554444445556666666666666666666666666666666666666666555556666666666666


Q ss_pred             CCCCcc
Q 042603          751 YNNLSG  756 (874)
Q Consensus       751 ~N~l~~  756 (874)
                      +|++..
T Consensus       161 ~N~~~c  166 (220)
T 2v9t_B          161 QNPFIC  166 (220)
T ss_dssp             SSCEEC
T ss_pred             CCCcCC
Confidence            666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=4.5e-18  Score=183.67  Aligned_cols=177  Identities=21%  Similarity=0.204  Sum_probs=115.9

Q ss_pred             CEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhh-cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCc
Q 042603          500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH-YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANN  578 (874)
Q Consensus       500 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n  578 (874)
                      +.++++++++.. +|..+ ...++.|++++|+++++.+..|. .+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~-iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            578888888763 44433 24577788888888777777776 7777777887777777666667777777777777777


Q ss_pred             cCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEec
Q 042603          579 YIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTK  658 (874)
Q Consensus       579 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (874)
                      ++++..+..|..+++|+.|+|++|++++..|..+..                                            
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~--------------------------------------------  134 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED--------------------------------------------  134 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------------------------------------------
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC--------------------------------------------
Confidence            777666666777777777777777776443333322                                            


Q ss_pred             CcccccccccccCcceEEcCCCcccccCCccc---cccccCCeEecCCcccccchhhhccCCCC--CCEEECCCCcCcc
Q 042603          659 NMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI---GYLTRIRALNLSHNNLTGTIPTTFSNLKQ--IESLDLSYNLLHG  732 (874)
Q Consensus       659 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~LdLs~N~l~~  732 (874)
                                +++|+.|+|++|+|++..+..|   ..+++|+.|||++|+|++..+..|..++.  ++.|+|++|++..
T Consensus       135 ----------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          135 ----------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             ----------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ----------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence                      2366666666666664333333   45666666666666666655566666655  3666666666653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2.8e-17  Score=171.45  Aligned_cols=173  Identities=20%  Similarity=0.292  Sum_probs=140.3

Q ss_pred             ccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCcccccccc
Q 042603           26 IASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLC  105 (874)
Q Consensus        26 l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~  105 (874)
                      +..+++|++|++++|.+.+. +  .+..+++|++|++++|.+.....     +..+++|++|++++|.++..    ..+.
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~--~~~~l~~L~~L~L~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~----~~l~  109 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q--GIQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDL----SSLK  109 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T--TGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCG----GGGT
T ss_pred             hhhcCcccEEEccCCCcccC-h--hHhcCCCCCEEEccCCccCCCcc-----cccCCCCCEEECCCCcCCCC----hhhc
Confidence            45678889999998887633 3  47788899999999888763322     67889999999999988762    3488


Q ss_pred             CCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEE
Q 042603          106 ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVL  185 (874)
Q Consensus       106 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  185 (874)
                      .+++|++|++++|++++.  ..+.++++|++|++++|.+++.  ..+..+++|++|++++|++++..+  +..+++|++|
T Consensus       110 ~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L  183 (291)
T 1h6t_A          110 DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL  183 (291)
T ss_dssp             TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence            899999999999998865  4578889999999999998865  568889999999999999887654  8889999999


Q ss_pred             EcccccccccCCccccCCCCCCCEEEcccccccc
Q 042603          186 DVSYNQLTENISSSPLMHLTSIEELILSNNHFQI  219 (874)
Q Consensus       186 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~  219 (874)
                      ++++|.+++ ++  .+..+++|+.|++++|++..
T Consensus       184 ~L~~N~i~~-l~--~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          184 YLSKNHISD-LR--ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ECCSSCCCB-CG--GGTTCTTCSEEEEEEEEEEC
T ss_pred             ECCCCcCCC-Ch--hhccCCCCCEEECcCCcccC
Confidence            999999876 54  48889999999999988763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=5.7e-18  Score=193.65  Aligned_cols=103  Identities=19%  Similarity=0.253  Sum_probs=46.8

Q ss_pred             CCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEc
Q 042603          496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL  575 (874)
Q Consensus       496 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  575 (874)
                      ++.|+.|++++|.+. .++....+++|+.|+|++|+++++.+  +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|
T Consensus        42 L~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           42 LNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HTTCCCCBCTTCCCC-CCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCCCC-CChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence            334444444444443 12222223444444444444444333  4455555555555555543 22 3445555555555


Q ss_pred             cCccCcccCCccccCCCCCCEEEccCCcCC
Q 042603          576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLS  605 (874)
Q Consensus       576 ~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (874)
                      ++|.+.+.  ..+..+++|+.|+|++|.++
T Consensus       117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A          117 EHNGISDI--NGLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             TTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             cCCCCCCC--ccccCCCccCEEECCCCccC
Confidence            55555432  23444555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.1e-17  Score=191.16  Aligned_cols=193  Identities=27%  Similarity=0.392  Sum_probs=160.4

Q ss_pred             CEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCcc
Q 042603          500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNY  579 (874)
Q Consensus       500 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  579 (874)
                      ..+.+..+.+.... ....+..|+.|++++|.++.+.  .+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.
T Consensus        24 ~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           24 IKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             HHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence            33445555554322 2234778999999999998774  58899999999999999997655  8999999999999999


Q ss_pred             CcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecC
Q 042603          580 IEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKN  659 (874)
Q Consensus       580 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (874)
                      +.+. | .+..+++|+.|+|++|.+++ +| .+..                                             
T Consensus        99 l~~l-~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~---------------------------------------------  129 (605)
T 1m9s_A           99 IKDL-S-SLKDLKKLKSLSLEHNGISD-IN-GLVH---------------------------------------------  129 (605)
T ss_dssp             CCCC-T-TSTTCTTCCEEECTTSCCCC-CG-GGGG---------------------------------------------
T ss_pred             CCCC-h-hhccCCCCCEEEecCCCCCC-Cc-cccC---------------------------------------------
Confidence            9853 3 78999999999999999974 22 2222                                             


Q ss_pred             cccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhh
Q 042603          660 MSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI  739 (874)
Q Consensus       660 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~  739 (874)
                               +++|+.|+|++|.+++.  ..++.+++|+.|+|++|++++..|  +..+++|+.|+|++|+|++.  +.+.
T Consensus       130 ---------l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~  194 (605)
T 1m9s_A          130 ---------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALA  194 (605)
T ss_dssp             ---------CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGT
T ss_pred             ---------CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHc
Confidence                     45899999999999965  679999999999999999998877  99999999999999999975  4689


Q ss_pred             cCCCCCeEEccCCCCcccCCCc
Q 042603          740 VLNTLAVFRVAYNNLSGKIPDR  761 (874)
Q Consensus       740 ~l~~L~~l~ls~N~l~~~~p~~  761 (874)
                      .+++|+.|++++|++++.+...
T Consensus       195 ~l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          195 GLKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             TCTTCSEEECCSEEEECCCCCC
T ss_pred             cCCCCCEEEccCCcCcCCcccc
Confidence            9999999999999998765443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=5e-17  Score=163.04  Aligned_cols=86  Identities=22%  Similarity=0.239  Sum_probs=41.4

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      +|+.|+|++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..+..+++|+.|+++
T Consensus        89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A           89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            3334444444444333334444455555555555555 344444555555555555555554444445555555555555


Q ss_pred             CCCCccc
Q 042603          751 YNNLSGK  757 (874)
Q Consensus       751 ~N~l~~~  757 (874)
                      +|++.+.
T Consensus       168 ~N~~~c~  174 (229)
T 3e6j_A          168 GNPWDCE  174 (229)
T ss_dssp             TSCBCTT
T ss_pred             CCCccCC
Confidence            5555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=2.6e-17  Score=160.03  Aligned_cols=114  Identities=24%  Similarity=0.359  Sum_probs=106.2

Q ss_pred             CcceEEcCCCcccccCCc-cccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603          671 SMSGIDLSCNKLTGEIPT-QIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV  749 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l  749 (874)
                      .++.|++++|++++..+. .|+.+++|++|+|++|+|++..|..|+++++|++|+|++|+|++..|..+..+++|+.|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            778999999999977664 4899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          750 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       750 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      ++|++++.+|..+..+++++.+++.+|||.|+|++
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            99999999999899999999999999999998765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=9e-20  Score=207.35  Aligned_cols=77  Identities=18%  Similarity=0.188  Sum_probs=50.8

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccch-hhhccCCCCCCEEECCCCcCcccCCh---hhhcCCCCCe
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGKIPP---QLIVLNTLAV  746 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p~---~l~~l~~L~~  746 (874)
                      +|+.|+|++|.|++ +| .++.+++|+.|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|.   .+..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            55555566666654 45 6667777777777777777665 77777777777777777777766542   2334677777


Q ss_pred             EEc
Q 042603          747 FRV  749 (874)
Q Consensus       747 l~l  749 (874)
                      |++
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=3.9e-17  Score=158.66  Aligned_cols=114  Identities=23%  Similarity=0.362  Sum_probs=107.7

Q ss_pred             cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603          670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV  749 (874)
Q Consensus       670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l  749 (874)
                      +.++.|++++|.++ .+|..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|+.|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            47889999999999 78899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          750 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       750 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      ++|++++..+..+..+++++.+++.+|||.|+|.+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            99999998888888999999999999999997654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.3e-17  Score=169.20  Aligned_cols=172  Identities=16%  Similarity=0.197  Sum_probs=135.9

Q ss_pred             CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEE
Q 042603          519 LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLID  598 (874)
Q Consensus       519 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  598 (874)
                      +.++..+++++|.++++.  .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+  +..+++|+.|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            445666777777777665  46777888888888888874 44 67888888889998888886544  88888999999


Q ss_pred             ccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcC
Q 042603          599 LSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLS  678 (874)
Q Consensus       599 Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  678 (874)
                      +++|++++ +|...                                                        .++|+.|+++
T Consensus        92 L~~N~l~~-l~~~~--------------------------------------------------------~~~L~~L~L~  114 (263)
T 1xeu_A           92 VNRNRLKN-LNGIP--------------------------------------------------------SACLSRLFLD  114 (263)
T ss_dssp             CCSSCCSC-CTTCC--------------------------------------------------------CSSCCEEECC
T ss_pred             CCCCccCC-cCccc--------------------------------------------------------cCcccEEEcc
Confidence            99998863 22110                                                        0378889999


Q ss_pred             CCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccC
Q 042603          679 CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKI  758 (874)
Q Consensus       679 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  758 (874)
                      +|++++. + .++.+++|+.|+|++|++++. | .++.+++|+.|++++|++++.  ..+..+++|+.|++++|++++..
T Consensus       115 ~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          115 NNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             SSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            9999853 3 588899999999999999975 3 688899999999999999877  67889999999999999988764


Q ss_pred             C
Q 042603          759 P  759 (874)
Q Consensus       759 p  759 (874)
                      .
T Consensus       189 ~  189 (263)
T 1xeu_A          189 V  189 (263)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=5e-17  Score=158.07  Aligned_cols=89  Identities=25%  Similarity=0.355  Sum_probs=52.1

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      +|+.|+|++|++++..|..|+.+++|++|+|++|+|++..|..|+++++|++|+|++|++++.+|..+..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            45555555555555555555555666666666666665555555566666666666666665555556666666666666


Q ss_pred             CCCCcccCC
Q 042603          751 YNNLSGKIP  759 (874)
Q Consensus       751 ~N~l~~~~p  759 (874)
                      +|++.+..+
T Consensus       135 ~N~l~c~c~  143 (192)
T 1w8a_A          135 SNPFNCNCH  143 (192)
T ss_dssp             TCCBCCSGG
T ss_pred             CCCccCcCc
Confidence            666655443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=7.1e-17  Score=157.93  Aligned_cols=81  Identities=21%  Similarity=0.342  Sum_probs=50.0

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcc-cccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN-LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV  749 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l  749 (874)
                      +|+.|++++|++++..|..++.+++|++|+|++|+ ++ .+| .+..+++|++|++++|++++. + .+..+++|+.|++
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l  188 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYA  188 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEE
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEe
Confidence            55556666666665556666666677777777776 44 334 466667777777777777653 2 5666677777777


Q ss_pred             cCCCCc
Q 042603          750 AYNNLS  755 (874)
Q Consensus       750 s~N~l~  755 (874)
                      ++|++.
T Consensus       189 ~~N~i~  194 (197)
T 4ezg_A          189 FSQTIG  194 (197)
T ss_dssp             CBC---
T ss_pred             eCcccC
Confidence            777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.4e-16  Score=155.93  Aligned_cols=151  Identities=19%  Similarity=0.270  Sum_probs=98.5

Q ss_pred             CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEc
Q 042603          520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL  599 (874)
Q Consensus       520 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  599 (874)
                      ++|+.|++++|.++.+.  .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            34555555555555332  3555666666666666554  2235666777777777777776666666777777777777


Q ss_pred             cCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCC
Q 042603          600 SHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSC  679 (874)
Q Consensus       600 s~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  679 (874)
                      ++|.+++..|..+..                                                      +++|+.|++++
T Consensus       120 s~n~i~~~~~~~l~~------------------------------------------------------l~~L~~L~L~~  145 (197)
T 4ezg_A          120 SHSAHDDSILTKINT------------------------------------------------------LPKVNSIDLSY  145 (197)
T ss_dssp             CSSBCBGGGHHHHTT------------------------------------------------------CSSCCEEECCS
T ss_pred             cCCccCcHhHHHHhh------------------------------------------------------CCCCCEEEccC
Confidence            777776545544433                                                      23677777777


Q ss_pred             Cc-ccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc
Q 042603          680 NK-LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  732 (874)
Q Consensus       680 N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  732 (874)
                      |. ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus       146 n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          146 NGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             CCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            77 44 455 578888888888888888864 3 67888888888888888754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=5.8e-17  Score=172.71  Aligned_cols=101  Identities=16%  Similarity=0.092  Sum_probs=56.5

Q ss_pred             CCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCc-EEEccCccCCCCCchhhcCCCCCcEE
Q 042603          496 LDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLV-TLDLSYNRLHGSIPNWIDKLPQLSYI  573 (874)
Q Consensus       496 l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L  573 (874)
                      +++|+.+++++|+++...+..+. +.+|+++++.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            44555555555555433333333 455555555554 5555555666666666 666655 4554445566666666666


Q ss_pred             EccCccCcccCCccccCCCCCCEEE
Q 042603          574 LLANNYIEGEIPVQLCQLKEVRLID  598 (874)
Q Consensus       574 ~l~~n~~~~~~~~~~~~l~~L~~L~  598 (874)
                      ++.+|.+....+.+|.++++|+.+.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            6666666655555666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=1.7e-18  Score=196.83  Aligned_cols=216  Identities=18%  Similarity=0.160  Sum_probs=141.6

Q ss_pred             CCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEE
Q 042603          423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL  502 (874)
Q Consensus       423 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  502 (874)
                      .+++|+.|++++|++. .+|..+..+++|+.|++++|......+..+           ..+...+..|..+..+++|+.|
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L  414 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAV  414 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccC
Confidence            3455555555555554 445555555555555554432100000000           0011233445555556666666


Q ss_pred             E-CcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc
Q 042603          503 D-LSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE  581 (874)
Q Consensus       503 ~-L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  581 (874)
                      + ++.|.+.          .|+.+.+.+|.++.+.+      ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++
T Consensus       415 ~~l~~n~~~----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~  476 (567)
T 1dce_A          415 DPMRAAYLD----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR  476 (567)
T ss_dssp             CGGGHHHHH----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred             cchhhcccc----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence            6 4544432          45556666666655433      247888888888885 565 888888888888888888


Q ss_pred             ccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcc
Q 042603          582 GEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMS  661 (874)
Q Consensus       582 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (874)
                       .+|..++.+++|+.|+|++|++++ +| .+..                                               
T Consensus       477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~-----------------------------------------------  506 (567)
T 1dce_A          477 -ALPPALAALRCLEVLQASDNALEN-VD-GVAN-----------------------------------------------  506 (567)
T ss_dssp             -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT-----------------------------------------------
T ss_pred             -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC-----------------------------------------------
Confidence             678888888888888888888875 55 4333                                               


Q ss_pred             cccccccccCcceEEcCCCcccccC-CccccccccCCeEecCCcccccchhh---hccCCCCCCEEEC
Q 042603          662 YYYRGRILTSMSGIDLSCNKLTGEI-PTQIGYLTRIRALNLSHNNLTGTIPT---TFSNLKQIESLDL  725 (874)
Q Consensus       662 ~~~~~~~~~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdL  725 (874)
                             +++|+.|+|++|+|++.+ |..++.+++|+.|+|++|.+++.+|.   .+..+++|+.||+
T Consensus       507 -------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          507 -------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence                   348888999999998776 89999999999999999999977553   2445889999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=2.8e-17  Score=193.12  Aligned_cols=117  Identities=26%  Similarity=0.264  Sum_probs=34.8

Q ss_pred             ccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEcc
Q 042603          473 LALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS  552 (874)
Q Consensus       473 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls  552 (874)
                      +.++.|++.+|.+... +..     .++.++|+.|.+.+             +++..|.+. ..+..+..++.|+.|+|+
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~-------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls  232 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE-------------DDDIENRMV-MPKDSKYDDQLWHALDLS  232 (727)
T ss_dssp             ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred             CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC-------------cccccccee-cChhhhccCCCCcEEECC
Confidence            4466677777776542 222     23444455444432             122223222 234444555555555555


Q ss_pred             CccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchh
Q 042603          553 YNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCL  612 (874)
Q Consensus       553 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  612 (874)
                      +|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+
T Consensus       233 ~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~  289 (727)
T 4b8c_D          233 NLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL  289 (727)
T ss_dssp             TSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG
T ss_pred             CCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh
Confidence            55554 34444445555555555555555 44555555555555555555554 444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=2.6e-16  Score=161.33  Aligned_cols=170  Identities=18%  Similarity=0.232  Sum_probs=117.0

Q ss_pred             CCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEE
Q 042603          424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLD  503 (874)
Q Consensus       424 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  503 (874)
                      +.+++.++++++.+++..  .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+  +..+++|+.|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344555556666555332  35566666666666666653 33 46666677777777777665433  66777777777


Q ss_pred             CcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCccc
Q 042603          504 LSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGE  583 (874)
Q Consensus       504 L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  583 (874)
                      +++|++++ +|.... ++|+.|++++|++++..  .+..+++|++|++++|++++. + .+..+++|+.|++++|++++.
T Consensus        92 L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           92 VNRNRLKN-LNGIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CCSSCCSC-CTTCCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCCccCC-cCcccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            77777764 333333 67888888888877752  477788888888888888854 3 577888888888888888865


Q ss_pred             CCccccCCCCCCEEEccCCcCCCC
Q 042603          584 IPVQLCQLKEVRLIDLSHNNLSGH  607 (874)
Q Consensus       584 ~~~~~~~l~~L~~L~Ls~N~l~~~  607 (874)
                        ..+..+++|+.|++++|++++.
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              5678888888888888888643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=4.4e-17  Score=191.39  Aligned_cols=224  Identities=21%  Similarity=0.223  Sum_probs=113.3

Q ss_pred             CCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEEC
Q 042603          425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL  504 (874)
Q Consensus       425 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  504 (874)
                      +.++.|++.+|.+... +.     ..++.++|+.|.+.+              +++..|.+. ..+..+..++.|+.|+|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCcc-hh-----hHhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence            4566777777766532 22     224455555555442              233344444 45677888888888888


Q ss_pred             cCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccC
Q 042603          505 SNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEI  584 (874)
Q Consensus       505 ~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  584 (874)
                      ++|.+....+..+.+++|++|+|++|+|+ .+|..+..+++|++|+|++|+++ .+|..++++++|++|+|++|.++ .+
T Consensus       232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l  308 (727)
T 4b8c_D          232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL  308 (727)
T ss_dssp             TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred             CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence            88888744445556888888888888888 55677888999999999999998 67888999999999999999987 67


Q ss_pred             CccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccc
Q 042603          585 PVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYY  664 (874)
Q Consensus       585 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (874)
                      |..|..+++|+.|+|++|++++.+|..+....                                                
T Consensus       309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~------------------------------------------------  340 (727)
T 4b8c_D          309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS------------------------------------------------  340 (727)
T ss_dssp             CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH------------------------------------------------
T ss_pred             ChhhhcCCCccEEeCCCCccCCCChHHHhhcc------------------------------------------------
Confidence            87899999999999999999888887765432                                                


Q ss_pred             ccccccCcceEEcCCCcccccCCccccccccCCeEecCCc--------ccccchhhhccCCCCCCEEECCCCcCc
Q 042603          665 RGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHN--------NLTGTIPTTFSNLKQIESLDLSYNLLH  731 (874)
Q Consensus       665 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~LdLs~N~l~  731 (874)
                           .....++|++|.+++.+|..      |+.|++++|        .+++..+..+.++..++...+++|-+.
T Consensus       341 -----~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          341 -----VTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             -----HHHHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred             -----hhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence                 01223678888888877764      445667766        455555555566666677777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=4.9e-16  Score=165.52  Aligned_cols=291  Identities=11%  Similarity=0.081  Sum_probs=163.1

Q ss_pred             CCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccC---
Q 042603           54 FKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLAN---  130 (874)
Q Consensus        54 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~---  130 (874)
                      +.+++.|.++++-.   ...+..+-..+++|++|||++|++.....   .-+.++.++.+.+..+.   +...+|.+   
T Consensus        24 ~~~l~~L~l~g~i~---~~~~~~l~~~l~~L~~LdLs~n~i~~~~~---~~~~~~~~~~~~~~~~~---I~~~aF~~~~~   94 (329)
T 3sb4_A           24 ANSITHLTLTGKLN---AEDFRHLRDEFPSLKVLDISNAEIKMYSG---KAGTYPNGKFYIYMANF---VPAYAFSNVVN   94 (329)
T ss_dssp             HHHCSEEEEEEEEC---HHHHHHHHHSCTTCCEEEEEEEEECCEEE---SSSSSGGGCCEEECTTE---ECTTTTEEEET
T ss_pred             hCceeEEEEecccc---HHHHHHHHHhhccCeEEecCcceeEEecC---ccccccccccccccccc---cCHHHhccccc
Confidence            45566666665421   11122122227888888888888762111   11223334555555553   33455666   


Q ss_pred             -----CCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccc---cccCCccccC
Q 042603          131 -----MTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQL---TENISSSPLM  202 (874)
Q Consensus       131 -----l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~l~  202 (874)
                           +++|+.|++++ .++.+.+.+|.++++|+++++++|.+..+.+.+|..+.++..+....+..   ...+....|.
T Consensus        95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                 88888888887 67766666788888888888888877767777777777777666654221   0112222444


Q ss_pred             CCCCCC-EEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCC
Q 042603          203 HLTSIE-ELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLN  281 (874)
Q Consensus       203 ~l~~L~-~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  281 (874)
                      ++.+|+ .+.+.....   .+..                     .+....                        ...+++
T Consensus       174 ~~~~L~~~i~~~~~~~---l~~~---------------------~~~~~~------------------------~~~~~~  205 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGK---LEDE---------------------IMKAGL------------------------QPRDIN  205 (329)
T ss_dssp             ESCCCEEEEEECTTCC---HHHH---------------------HHHTTC------------------------CGGGCS
T ss_pred             cccccceeEEecCCCc---HHHH---------------------Hhhccc------------------------Cccccc
Confidence            455554 333222110   0000                     000000                        112222


Q ss_pred             EEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCc-EEEcc
Q 042603          282 NADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLM-HLNLS  360 (874)
Q Consensus       282 ~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~-~L~l~  360 (874)
                      .+.+.++-.. .....+...+++|+.+++++|++..+.+.+|.++.+|+.+++.+| +. .|+...|..+++|+ .+++.
T Consensus       206 ~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          206 FLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELP  282 (329)
T ss_dssp             EEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEEC
T ss_pred             eEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEc
Confidence            2332222111 111112223566777777776666666667777777777777776 44 66777776677777 77777


Q ss_pred             CCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEE
Q 042603          361 RNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILA  407 (874)
Q Consensus       361 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  407 (874)
                      + .++.+.+.+|.+|++|+.++++.|+++ .++...|.++++|+.++
T Consensus       283 ~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          283 A-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             T-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             c-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence            6 566566677777777777777777776 66666666777777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=2.5e-15  Score=144.20  Aligned_cols=114  Identities=22%  Similarity=0.272  Sum_probs=105.6

Q ss_pred             cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603          670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV  749 (874)
Q Consensus       670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l  749 (874)
                      ++++.|++++|++++..+..|+.+++|++|+|++|++++..+..|+++++|++|++++|++++..+..+..+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            47899999999999877788899999999999999999888888999999999999999999888888999999999999


Q ss_pred             cCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          750 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       750 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      ++|++++.++..+..+++++.+++.+||+.|+|+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999998888777889999999999999999765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=2.1e-14  Score=155.80  Aligned_cols=263  Identities=11%  Similarity=0.065  Sum_probs=147.9

Q ss_pred             CCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEE
Q 042603          303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD  382 (874)
Q Consensus       303 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  382 (874)
                      ..++.+.+.+ .++.+...+|.++ +|+.+++..+ ++ .|+...|.. .+|+.+.+.. .+..+.+.+|.+|++|+.++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            4455555543 2444455556554 5777777655 33 566666654 3677777765 55556666777777777777


Q ss_pred             cccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCC
Q 042603          383 ISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS  462 (874)
Q Consensus       383 l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  462 (874)
                      +.+|+++ .++...+. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++
T Consensus       187 l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          187 LSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             CTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             cCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence            7777776 66666654 566777777633 55555666666667777766654 34344455555 456666663 3333


Q ss_pred             CCCchhhhccccCCeeecCCCccc-----ccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccch
Q 042603          463 GKIPRWLGSLLALQDIIMPNNNLE-----GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLE  537 (874)
Q Consensus       463 ~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~  537 (874)
                      .....+|.++++|+.+.+.+|.+.     ...+.+|.+|++|+.+++.                        +.++.+..
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~------------------------~~i~~I~~  316 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP------------------------ESIRILGQ  316 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC------------------------TTCCEECT
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC------------------------CceEEEhh
Confidence            334445555555555555554433     2333445555555555544                        23444444


Q ss_pred             hhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCC-CCCEEEccCCc
Q 042603          538 SIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK-EVRLIDLSHNN  603 (874)
Q Consensus       538 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~Ls~N~  603 (874)
                      .+|.+|++|+.+++..| ++.+.+.+|.++ +|+.+.+.+|.+....+..|.+++ .++.|.+..+.
T Consensus       317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            55555556666665433 443444555555 666666666655544455555553 55566555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.7e-15  Score=141.61  Aligned_cols=85  Identities=21%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccch-hhhccCCCCCCEEECCCCcCcccCC---hhhhcCCCCCe
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGKIP---PQLIVLNTLAV  746 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~~  746 (874)
                      +|+.|++++|.+++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|++++|++++..+   ..+..+++|+.
T Consensus        72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence            3444444444444444444444555555555555555432 2455555666666666666654443   35555666666


Q ss_pred             EEccCCCCc
Q 042603          747 FRVAYNNLS  755 (874)
Q Consensus       747 l~ls~N~l~  755 (874)
                      |++++|.+.
T Consensus       152 L~l~~n~~~  160 (168)
T 2ell_A          152 LDGYDREDQ  160 (168)
T ss_dssp             ETTEETTSC
T ss_pred             ecCCCCChh
Confidence            666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.9e-15  Score=141.45  Aligned_cols=135  Identities=21%  Similarity=0.216  Sum_probs=114.6

Q ss_pred             cCCCCcEEEccCccCC-CCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccc
Q 042603          542 YYPYLVTLDLSYNRLH-GSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEG  620 (874)
Q Consensus       542 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~  620 (874)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..      
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------   93 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------   93 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence            3478999999999998 67788888999999999999999866  77889999999999999998766665544      


Q ss_pred             cccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccC-CccccccccCCeE
Q 042603          621 YYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI-PTQIGYLTRIRAL  699 (874)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L  699 (874)
                                                                      +++|+.|++++|.+++.. +..+..+++|++|
T Consensus        94 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A           94 ------------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSL  125 (168)
T ss_dssp             ------------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred             ------------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence                                                            348899999999998642 2788999999999


Q ss_pred             ecCCcccccchh---hhccCCCCCCEEECCCCcCcc
Q 042603          700 NLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHG  732 (874)
Q Consensus       700 ~Ls~N~l~~~~p---~~~~~l~~L~~LdLs~N~l~~  732 (874)
                      ++++|.+++..+   ..+..+++|++||+++|.+..
T Consensus       126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            999999997766   588999999999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=4.8e-15  Score=137.70  Aligned_cols=82  Identities=20%  Similarity=0.223  Sum_probs=57.7

Q ss_pred             cCcceEEcCCCcccccCCccccccccCCeEecCCcccccc-hhhhccCCCCCCEEECCCCcCcccCC---hhhhcCCCCC
Q 042603          670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT-IPTTFSNLKQIESLDLSYNLLHGKIP---PQLIVLNTLA  745 (874)
Q Consensus       670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~  745 (874)
                      ++|+.|++++|.+++.+|..++.+++|++|++++|++++. .|..++.+++|++|++++|++++..+   ..+..+++|+
T Consensus        64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            3666666666666655666666677777777777777764 34677777777777777777776655   4677777777


Q ss_pred             eEEccC
Q 042603          746 VFRVAY  751 (874)
Q Consensus       746 ~l~ls~  751 (874)
                      .|++++
T Consensus       144 ~L~l~d  149 (149)
T 2je0_A          144 YLDGYD  149 (149)
T ss_dssp             EETTBC
T ss_pred             cccCCC
Confidence            777653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=140.73  Aligned_cols=87  Identities=26%  Similarity=0.258  Sum_probs=68.3

Q ss_pred             cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603          670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV  749 (874)
Q Consensus       670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l  749 (874)
                      ++|+.|+|++|.|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|++
T Consensus        54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (193)
T 2wfh_A           54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI  133 (193)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence            36667777777777666777888888888888888888777778888888888888888888766667788888888888


Q ss_pred             cCCCCcc
Q 042603          750 AYNNLSG  756 (874)
Q Consensus       750 s~N~l~~  756 (874)
                      ++|++.+
T Consensus       134 ~~N~~~C  140 (193)
T 2wfh_A          134 GANPLYC  140 (193)
T ss_dssp             CSSCEEC
T ss_pred             CCCCeec
Confidence            8888764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=8.1e-14  Score=151.25  Aligned_cols=268  Identities=13%  Similarity=0.109  Sum_probs=171.2

Q ss_pred             CCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEEC
Q 042603          425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL  504 (874)
Q Consensus       425 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  504 (874)
                      ..++.+.+.. .++.....+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.+ .+..+.+.+|.+|++|+.+++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            3344444433 2333444455554 4666666554 443444555553 577777765 555566677888888888888


Q ss_pred             cCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccC
Q 042603          505 SNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEI  584 (874)
Q Consensus       505 ~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  584 (874)
                      ++|+++......+...+|+.+.+.. .++.+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.+....
T Consensus       188 ~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~  263 (401)
T 4fdw_A          188 SKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIA  263 (401)
T ss_dssp             TTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEEC
T ss_pred             CCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEC
Confidence            8888876666677778888888874 477788888999999999999875 55455667777 78899988 45566667


Q ss_pred             CccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccc
Q 042603          585 PVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYY  664 (874)
Q Consensus       585 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (874)
                      ..+|.++++|+.+++.+|.+.......+...                                               .+
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~-----------------------------------------------aF  296 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPY-----------------------------------------------CL  296 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTT-----------------------------------------------TT
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHH-----------------------------------------------Hh
Confidence            7888899999999988877641100000000                                               00


Q ss_pred             ccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCC-C
Q 042603          665 RGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN-T  743 (874)
Q Consensus       665 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~  743 (874)
                        ..+++|+.+++. +.++.+...+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ .
T Consensus       297 --~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~  371 (401)
T 4fdw_A          297 --EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDD  371 (401)
T ss_dssp             --TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTT
T ss_pred             --hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCC
Confidence              013466666666 3455555666777777777777444 565666677777 777777777766655555565553 4


Q ss_pred             CCeEEccCCC
Q 042603          744 LAVFRVAYNN  753 (874)
Q Consensus       744 L~~l~ls~N~  753 (874)
                      +..+.+..+.
T Consensus       372 l~~l~vp~~~  381 (401)
T 4fdw_A          372 ITVIRVPAES  381 (401)
T ss_dssp             CCEEEECGGG
T ss_pred             ccEEEeCHHH
Confidence            5555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=4.5e-15  Score=137.90  Aligned_cols=129  Identities=21%  Similarity=0.272  Sum_probs=105.7

Q ss_pred             CCCCcEEEccCccCC-CCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccccccc
Q 042603          543 YPYLVTLDLSYNRLH-GSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGY  621 (874)
Q Consensus       543 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~  621 (874)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++.+|..+..       
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------   86 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------   86 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence            356888888888887 67777778888888888888888865  67888889999999999888666655443       


Q ss_pred             ccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccccc-CCccccccccCCeEe
Q 042603          622 YDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE-IPTQIGYLTRIRALN  700 (874)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~  700 (874)
                                                                     +++|+.|++++|.+++. .|..++.+++|++|+
T Consensus        87 -----------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           87 -----------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             -----------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             -----------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence                                                           34888999999999864 347899999999999


Q ss_pred             cCCcccccchh---hhccCCCCCCEEECCC
Q 042603          701 LSHNNLTGTIP---TTFSNLKQIESLDLSY  727 (874)
Q Consensus       701 Ls~N~l~~~~p---~~~~~l~~L~~LdLs~  727 (874)
                      +++|.+++..+   ..++.+++|+.||+++
T Consensus       120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999998776   6899999999999874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.56  E-value=9.2e-15  Score=138.71  Aligned_cols=110  Identities=25%  Similarity=0.292  Sum_probs=101.2

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      +.+.+++++|+++ .+|..+.  ++|++|+|++|+|++..|..|.++++|++|||++|+|++..|..|..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4568999999999 5777664  899999999999999999999999999999999999998888888999999999999


Q ss_pred             CCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      +|+|++.+|..+..+++++.+++.+||+.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999999888888999999999999999999764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.54  E-value=1.5e-13  Score=150.13  Aligned_cols=332  Identities=14%  Similarity=0.105  Sum_probs=172.1

Q ss_pred             ccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchh
Q 042603          315 LFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE  394 (874)
Q Consensus       315 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  394 (874)
                      ++.+...+|.++.+|+.+.+..+ ++ .|+...|..+++|+.+++..+ ++.+...+|.++++|+.+.+..+ +. .+..
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~  133 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV  133 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence            44455566777777777777643 43 566666666667777777544 44444556666666665544432 22 2333


Q ss_pred             HHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhcccc
Q 042603          395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA  474 (874)
Q Consensus       395 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  474 (874)
                      ..+.++..++                        ......  .......+|.+|++|+.+.+.++.. .....+|.++.+
T Consensus       134 ~aF~~~~~~~------------------------~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~  186 (394)
T 4fs7_A          134 EAFKGCDFKE------------------------ITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGK  186 (394)
T ss_dssp             TTTTTCCCSE------------------------EECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTT
T ss_pred             eeeecccccc------------------------cccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCC
Confidence            3333232211                        111111  1112234455555566655554322 233445556666


Q ss_pred             CCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCc
Q 042603          475 LQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN  554 (874)
Q Consensus       475 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n  554 (874)
                      |+.+.+..+ +......+|.++..|+.+.+..+... .....+....|+.+.+.. .++.+...+|.++..++.+.+..+
T Consensus       187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT
T ss_pred             ceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECC-CceecccccccccccceeEEcCCC
Confidence            666666554 33344555666666666666554432 222334455666666643 334455556777777777777665


Q ss_pred             cCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCc-hhhccccccccccCCCCCccccC
Q 042603          555 RLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP-CLVNTALSEGYYDAVAPTWDHAS  633 (874)
Q Consensus       555 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~~~~~~~~~~  633 (874)
                      ... .....|..+..++.+....+.+.   ...|..+.+|+.+.+.++ ++ .++. ++.                    
T Consensus       264 ~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~--------------------  317 (394)
T 4fs7_A          264 KLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFE--------------------  317 (394)
T ss_dssp             TCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTT--------------------
T ss_pred             cce-eeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhc--------------------
Confidence            443 44556666777776666554432   234566666666665433 21 1110 000                    


Q ss_pred             CCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhh
Q 042603          634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT  713 (874)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  713 (874)
                                                        .+++|+.+++..+ ++.+-..+|.++++|+.+++..| ++.+...+
T Consensus       318 ----------------------------------~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a  361 (394)
T 4fs7_A          318 ----------------------------------SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA  361 (394)
T ss_dssp             ----------------------------------TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred             ----------------------------------CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence                                              0235555555433 44344556666666666666655 55455566


Q ss_pred             ccCCCCCCEEECCCCcCcccCChhhhcCCCCC
Q 042603          714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLA  745 (874)
Q Consensus       714 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~  745 (874)
                      |.++++|+.+++..+ ++ .+..+|.+.++|+
T Consensus       362 F~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~  391 (394)
T 4fs7_A          362 FQGCINLKKVELPKR-LE-QYRYDFEDTTKFK  391 (394)
T ss_dssp             BTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred             hhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence            666666666666544 22 1233444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=3.3e-14  Score=136.31  Aligned_cols=89  Identities=22%  Similarity=0.244  Sum_probs=59.8

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      +|+.|++++|++++..+..|+.+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            55556666666655555556667777777777777776666666777777777777777776555556667777777777


Q ss_pred             CCCCcccCC
Q 042603          751 YNNLSGKIP  759 (874)
Q Consensus       751 ~N~l~~~~p  759 (874)
                      +|++.+..|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            777766554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=2.7e-14  Score=135.89  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=99.1

Q ss_pred             ceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCC
Q 042603          673 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYN  752 (874)
Q Consensus       673 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N  752 (874)
                      +.+++++|+++ .+|..+.  ++|++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57999999997 7887775  89999999999999999999999999999999999999877777899999999999999


Q ss_pred             CCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          753 NLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       753 ~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      +|++.++..+..+++++.+++.+||+.|.|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            9998888778899999999999999999654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=9e-16  Score=150.18  Aligned_cols=155  Identities=22%  Similarity=0.275  Sum_probs=117.4

Q ss_pred             hhcCCCCcEEEccCccCCCCCch------hhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhh
Q 042603          540 IHYYPYLVTLDLSYNRLHGSIPN------WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLV  613 (874)
Q Consensus       540 ~~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  613 (874)
                      +...+.++.++++.+.+.+..|.      .+..+++|++|++++|++.+ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            45566777777777777777665      78888888888888888876 55 7778888888888888886 4554433


Q ss_pred             ccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCcccccc
Q 042603          614 NTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYL  693 (874)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l  693 (874)
                      .                                                      +++|+.|++++|++++ +| .++.+
T Consensus        91 ~------------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l  114 (198)
T 1ds9_A           91 V------------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKL  114 (198)
T ss_dssp             H------------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred             c------------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccC
Confidence            2                                                      2478888888888885 44 68888


Q ss_pred             ccCCeEecCCcccccchh-hhccCCCCCCEEECCCCcCcccCChh----------hhcCCCCCeEEccCCCCc
Q 042603          694 TRIRALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPPQ----------LIVLNTLAVFRVAYNNLS  755 (874)
Q Consensus       694 ~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~----------l~~l~~L~~l~ls~N~l~  755 (874)
                      ++|++|+|++|++++..+ ..+..+++|++|++++|++++.+|..          +..+++|+.||  +|.++
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            889999999999886544 57888888999999999888776653          77788888776  55544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.49  E-value=8.4e-13  Score=144.22  Aligned_cols=311  Identities=13%  Similarity=0.080  Sum_probs=219.4

Q ss_pred             hccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCC
Q 042603          273 FLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLP  352 (874)
Q Consensus       273 ~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~  352 (874)
                      .+.+|.+|+.+.+..+ +. .++...|.+|++|+.+++.++ +..+...+|.++.+|+.+.+..+ +. .+....|....
T Consensus        66 AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~~  140 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGCD  140 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTCC
T ss_pred             HhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeeccc
Confidence            4556777777777643 43 566666778888888888654 56666677888888888777654 22 45555555443


Q ss_pred             CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603          353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL  432 (874)
Q Consensus       353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  432 (874)
                       +....+... .......+|.++++|+.+.+.++. . .++...+.++.+|+.+.+..+ ++......|.++..|+.+.+
T Consensus       141 -~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          141 -FKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             -CSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred             -ccccccCcc-ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence             333333222 223445678888899998887653 3 577777778888888888766 55566677778888888887


Q ss_pred             cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 042603          433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT  512 (874)
Q Consensus       433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  512 (874)
                      ..+...  +......+.+|+.+.+.... .......+..+..++.+.+..+... .....|..+..++.+....+.+.  
T Consensus       216 ~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~--  289 (394)
T 4fs7_A          216 PNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP--  289 (394)
T ss_dssp             CTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--
T ss_pred             CCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--
Confidence            766432  22334455778888876543 3244567788888998888876543 56677888888888887765432  


Q ss_pred             CCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCC
Q 042603          513 LPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK  592 (874)
Q Consensus       513 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  592 (874)
                      ...+..+.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.+++
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            112334788999998754 77788889999999999999754 66566788999999999999876 7667778899999


Q ss_pred             CCCEEEccCC
Q 042603          593 EVRLIDLSHN  602 (874)
Q Consensus       593 ~L~~L~Ls~N  602 (874)
                      +|+.+++..+
T Consensus       367 ~L~~i~lp~~  376 (394)
T 4fs7_A          367 NLKKVELPKR  376 (394)
T ss_dssp             TCCEEEEEGG
T ss_pred             CCCEEEECCC
Confidence            9999988654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=2.9e-13  Score=128.29  Aligned_cols=90  Identities=24%  Similarity=0.224  Sum_probs=84.6

Q ss_pred             cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603          670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV  749 (874)
Q Consensus       670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l  749 (874)
                      +.++.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..+..+++|+.|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            47889999999999988999999999999999999999988888999999999999999999888888999999999999


Q ss_pred             cCCCCcccCC
Q 042603          750 AYNNLSGKIP  759 (874)
Q Consensus       750 s~N~l~~~~p  759 (874)
                      ++|++.+..+
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            9999987655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=2.2e-13  Score=130.25  Aligned_cols=83  Identities=14%  Similarity=0.136  Sum_probs=52.5

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhh--hccCCCCCCEEECCCCcCcccCCh----hhhcCCCC
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT--TFSNLKQIESLDLSYNLLHGKIPP----QLIVLNTL  744 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~~p~----~l~~l~~L  744 (874)
                      +|+.|++++|.+++..|..++.+++|++|+|++|+++. +|.  .+..+++|+.|++++|+++. +|.    .+..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCcc
Confidence            55556666666654444444666777777777777753 443  66677777777777777763 344    36677777


Q ss_pred             CeEEccCCCCc
Q 042603          745 AVFRVAYNNLS  755 (874)
Q Consensus       745 ~~l~ls~N~l~  755 (874)
                      +.|++++|.+.
T Consensus       143 ~~Ld~~~n~~~  153 (176)
T 1a9n_A          143 RVLDFQKVKLK  153 (176)
T ss_dssp             SEETTEECCHH
T ss_pred             ceeCCCcCCHH
Confidence            77777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=2.4e-15  Score=147.11  Aligned_cols=153  Identities=20%  Similarity=0.267  Sum_probs=127.8

Q ss_pred             hcCCCCCcEEEccCccCcccCCc------cccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCc
Q 042603          564 IDKLPQLSYILLANNYIEGEIPV------QLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPAL  637 (874)
Q Consensus       564 ~~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~  637 (874)
                      +...+.++.++++.+.+.+..|.      .+..+++|+.|++++|.+++ +| .+..                       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-----------------------   68 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-----------------------   68 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence            45567888888999999888877      89999999999999999985 55 4433                       


Q ss_pred             ccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCC
Q 042603          638 SYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNL  717 (874)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  717 (874)
                                                     +++|+.|++++|.++ .+|..+..+++|++|+|++|++++ +| .+..+
T Consensus        69 -------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l  114 (198)
T 1ds9_A           69 -------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL  114 (198)
T ss_dssp             -------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred             -------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence                                           358999999999999 688888889999999999999997 45 68999


Q ss_pred             CCCCEEECCCCcCcccCC-hhhhcCCCCCeEEccCCCCcccCCCc----------cccCCCCCcccccCCC
Q 042603          718 KQIESLDLSYNLLHGKIP-PQLIVLNTLAVFRVAYNNLSGKIPDR----------VAQFSTFEEDSYEGNP  777 (874)
Q Consensus       718 ~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p~~----------~~~~~~l~~~~~~gNp  777 (874)
                      ++|+.|++++|++++..+ +.+..+++|+.|++++|++++.+|..          +..++.++.++  |||
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~  183 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP  183 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence            999999999999996543 57899999999999999999887752          45566666554  554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=4.6e-13  Score=128.07  Aligned_cols=130  Identities=20%  Similarity=0.257  Sum_probs=81.8

Q ss_pred             cccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEc
Q 042603          472 LLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDL  551 (874)
Q Consensus       472 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L  551 (874)
                      +.+|+.|++++|.+.. ++......++|+.|++++|++++. +....+++|+.|++++|+++++.+..+..+++|++|++
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            3344444444444442 222122222566666666666543 44444666677777777776666666677788888888


Q ss_pred             cCccCCCCCch--hhcCCCCCcEEEccCccCcccCCc----cccCCCCCCEEEccCCcCC
Q 042603          552 SYNRLHGSIPN--WIDKLPQLSYILLANNYIEGEIPV----QLCQLKEVRLIDLSHNNLS  605 (874)
Q Consensus       552 s~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~Ls~N~l~  605 (874)
                      ++|+++ .+|.  .+..+++|+.|++++|++. ..|.    .+..+++|+.||+++|...
T Consensus        96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888876 3454  6777888888888888887 3444    3777888888888888764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=7.3e-13  Score=125.90  Aligned_cols=90  Identities=23%  Similarity=0.228  Sum_probs=83.6

Q ss_pred             cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603          670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV  749 (874)
Q Consensus       670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l  749 (874)
                      +.++.|+|++|+|++..|..|+.+++|++|+|++|+|+++.+..|.++++|++|||++|+|++..+..+..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            47889999999999988999999999999999999999888888999999999999999999877777999999999999


Q ss_pred             cCCCCcccCC
Q 042603          750 AYNNLSGKIP  759 (874)
Q Consensus       750 s~N~l~~~~p  759 (874)
                      ++|++....+
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            9999987654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=8.1e-13  Score=141.93  Aligned_cols=109  Identities=18%  Similarity=0.267  Sum_probs=98.1

Q ss_pred             ceEEcCCC-cccccCCccccccccCCeEecCC-cccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603          673 SGIDLSCN-KLTGEIPTQIGYLTRIRALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA  750 (874)
Q Consensus       673 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls  750 (874)
                      ..++++++ +++ .+|. ++.+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35789998 898 5888 99999999999996 99999988999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      +|+|++.+|..+..+. ++.+++.+|++.|+|.+
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            9999988887666555 89999999999998864

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.33  E-value=5.1e-11  Score=130.02  Aligned_cols=309  Identities=12%  Similarity=0.081  Sum_probs=162.1

Q ss_pred             CCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCc---ccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCc
Q 042603          279 DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNS---LFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLM  355 (874)
Q Consensus       279 ~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  355 (874)
                      .|+.+.+... ++ .+....|.+|++|+.+.+..+.   ++.+...+|..+.+|+.+.+..+ ++ .++...|..+.+|+
T Consensus        65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~  140 (394)
T 4gt6_A           65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCEELD  140 (394)
T ss_dssp             CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCTTCC
T ss_pred             cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhcccc
Confidence            4677766543 33 4555556677777777776553   55555666777777777666554 22 55666666666777


Q ss_pred             EEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCC
Q 042603          356 HLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGN  435 (874)
Q Consensus       356 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  435 (874)
                      .+.+..+ +..+...+|..+.+|+.+.+..+ ++ .+....+. ...|+.+.+..+- .......+..+.+++......+
T Consensus       141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~  215 (394)
T 4gt6_A          141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSE  215 (394)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCS
T ss_pred             cccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCcc-cccccchhhhccccceeccccc
Confidence            7777543 33355556777777777777654 33 45555553 3456666665442 2234455556666666655544


Q ss_pred             cCcccCCcccc-------------ccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEE
Q 042603          436 KFIGEIPESLS-------------KCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL  502 (874)
Q Consensus       436 ~l~~~~~~~~~-------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  502 (874)
                      .........+.             ....+..+.+.. .+......+|.++..|+.+.+.++... ....+|.+++.|+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i  293 (394)
T 4gt6_A          216 SYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDI  293 (394)
T ss_dssp             SSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEE
T ss_pred             ccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccc
Confidence            33211111111             111222222221 122223345666666666666544332 444556666666666


Q ss_pred             ECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc
Q 042603          503 DLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE  581 (874)
Q Consensus       503 ~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  581 (874)
                      .+. +.+.......+. +.+|+.+.+..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.+|++|+.+.+.++...
T Consensus       294 ~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          294 EFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             ECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred             cCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence            664 333333333333 566666666543 55555666666666666666543 44444556666666666666665433


Q ss_pred             ccCCccccCCCCCCEEEccCCcC
Q 042603          582 GEIPVQLCQLKEVRLIDLSHNNL  604 (874)
Q Consensus       582 ~~~~~~~~~l~~L~~L~Ls~N~l  604 (874)
                      .   ..+.....|+.+.+..|.+
T Consensus       371 ~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          371 W---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             H---HTCBCCCCC----------
T ss_pred             h---hhhhccCCCCEEEeCCCCE
Confidence            1   2455556666665555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=4.4e-13  Score=144.06  Aligned_cols=49  Identities=20%  Similarity=0.234  Sum_probs=23.2

Q ss_pred             cccccccCCeEecCCcccccc----hhhhccCCCCCCEEECCCCcCcccCChh
Q 042603          689 QIGYLTRIRALNLSHNNLTGT----IPTTFSNLKQIESLDLSYNLLHGKIPPQ  737 (874)
Q Consensus       689 ~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~~p~~  737 (874)
                      .+...+.|+.|+|++|.|++.    ++..+...++|++|||++|.|+..-...
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~  258 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV  258 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence            344444555555555555532    2233334455555555555555433333

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.27  E-value=2.5e-10  Score=124.61  Aligned_cols=161  Identities=17%  Similarity=0.171  Sum_probs=107.4

Q ss_pred             cCChhhhcCCC-CCcEEEccCCcCCcccchhccCCCCcCEEEcccCc---CCCCchhHHHhcCCCCCEEEcccCcccccC
Q 042603          342 HIPVEIGTYLP-GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ---LTGAIPERMAMGCFSLEILALSNNTLQGHI  417 (874)
Q Consensus       342 ~i~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~---i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  417 (874)
                      .|+...|..+. .|+.+.+..+ ++.+-..+|.++++|+.+.+..|.   ++ .++...|.+|.+|+.+.+..+ ++...
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence            45556665443 5888888754 666777888899999999888764   55 677777777888887776654 45555


Q ss_pred             CccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCC
Q 042603          418 FSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLD  497 (874)
Q Consensus       418 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  497 (874)
                      ...|..+.+|+.+.+..+ +......+|..|..|+.+.+..+ +......+|.. ..|+.+.+..+-. .....+|.++.
T Consensus       130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~  205 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECF  205 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCT
T ss_pred             hhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhcc
Confidence            667778888888888654 34355567778888888887765 33233445543 4677777765433 24455677777


Q ss_pred             CCCEEECcCCcC
Q 042603          498 CLKVLDLSNNSI  509 (874)
Q Consensus       498 ~L~~L~L~~n~l  509 (874)
                      .++......+..
T Consensus       206 ~l~~~~~~~~~~  217 (394)
T 4gt6_A          206 ALSTITSDSESY  217 (394)
T ss_dssp             TCCEEEECCSSS
T ss_pred             ccceeccccccc
Confidence            777776655443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=5.2e-13  Score=143.49  Aligned_cols=163  Identities=20%  Similarity=0.245  Sum_probs=87.5

Q ss_pred             CCCCEEEccCCccccccc---Ccccc-CCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCcc--cccc
Q 042603           30 SSLKYLSMRGCVLKGALH---GQDFH-EFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTI--LDQG  103 (874)
Q Consensus        30 ~~L~~L~Ls~~~~~~~~~---~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~  103 (874)
                      ++|++|+|++|.+++...   ...+. ..++|++|++++|.+.  ......+...+++|++|+|++|.++....  +...
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            456666666666553221   01111 2256666666666543  11122223344566666666666654211  1111


Q ss_pred             c-cCCCCCcEEEcCCCCCCCc----chhcccCCCCCCEEEccCCcCCCC----CcccccCCCCCCEEEccCCcCCCC---
Q 042603          104 L-CELVHLQELYIRDNDLRDS----LLWCLANMTSLQVLNVASNQLTGN----FPPGFCELVLLRELYIDNNDLRGS---  171 (874)
Q Consensus       104 l-~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~---  171 (874)
                      + ...++|++|++++|.+++.    ++..+..+++|++|+|++|.+...    ++..+...++|++|+|++|.++..   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence            2 2356677777777766542    233345566677777777766532    233455566777777777776542   


Q ss_pred             -ccccccCCCCCCEEEcccccccc
Q 042603          172 -LPLCLANLTSLRVLDVSYNQLTE  194 (874)
Q Consensus       172 -~~~~~~~l~~L~~L~L~~n~l~~  194 (874)
                       ++..+...++|++|||++|.+++
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCH
Confidence             23344456777777777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=1.4e-11  Score=132.22  Aligned_cols=113  Identities=15%  Similarity=0.151  Sum_probs=89.7

Q ss_pred             cCcceEEcCC-CcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEE
Q 042603          670 TSMSGIDLSC-NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFR  748 (874)
Q Consensus       670 ~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~  748 (874)
                      ++|+.|+|++ |.|++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..+..+..++ |+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            4899999996 999988889999999999999999999999999999999999999999999987777777776 99999


Q ss_pred             ccCCCCcccCCC-ccccCCCCCcccccCCCCCCCCC
Q 042603          749 VAYNNLSGKIPD-RVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       749 ls~N~l~~~~p~-~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      +++|++.....- .+.++.......+..+...|..|
T Consensus       110 l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A          110 LSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             CCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             eeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            999999754321 11111112223344566667543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.09  E-value=7.9e-09  Score=112.11  Aligned_cols=289  Identities=11%  Similarity=0.041  Sum_probs=135.3

Q ss_pred             hccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCC
Q 042603          273 FLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLP  352 (874)
Q Consensus       273 ~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~  352 (874)
                      |.....+++.+.+.. .++ .++...|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +. .++...|.. .
T Consensus        41 ~~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~  113 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-T  113 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-C
T ss_pred             ccccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-C
Confidence            344445555555543 222 455555566666666666543 555555556555 4555555443 22 455555543 3


Q ss_pred             CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCccccc------------CCcc
Q 042603          353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGH------------IFSE  420 (874)
Q Consensus       353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~------------~~~~  420 (874)
                      +|+.+.+..+ +......+|.++ +++.+.+..+ ++ .+....+..+..++...+..+.....            ....
T Consensus       114 ~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (379)
T 4h09_A          114 DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES  189 (379)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred             CcccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceecc
Confidence            5666666544 222333344433 4555444332 22 33334444455555555544322110            1111


Q ss_pred             ccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCC
Q 042603          421 KFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLK  500 (874)
Q Consensus       421 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  500 (874)
                      +.....+..+.+.... .......+..+..++.+.+..+ +......++.++..|+.+.+..+ ++.+...+|.++.+|+
T Consensus       190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK  266 (379)
T ss_dssp             CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             ccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence            2233334444333322 1123334445555555555443 22233344555555666555543 3334444555555566


Q ss_pred             EEECcCCcCcccCCCCC-CCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccC
Q 042603          501 VLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN  577 (874)
Q Consensus       501 ~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  577 (874)
                      .+.+..+ +.......+ .+.+|+.+.+.++.++.+...+|.+|++|+.+++..+ ++.+...+|.+|++|+.+.+..
T Consensus       267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            5555432 222222222 2455555555555555555555555555555555433 3333344555555555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.04  E-value=1.7e-08  Score=109.43  Aligned_cols=126  Identities=10%  Similarity=0.034  Sum_probs=61.1

Q ss_pred             hcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 042603           79 ESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLL  158 (874)
Q Consensus        79 ~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  158 (874)
                      ....+|+.+.+... ++.+  -..+|.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +......+|... +|
T Consensus        43 ~~~~~i~~v~ip~~-vt~I--g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           43 KDRDRISEVRVNSG-ITSI--GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL  115 (379)
T ss_dssp             GGGGGCSEEEECTT-EEEE--CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred             ccccCCEEEEeCCC-ccCh--HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence            34445555555422 2221  1245666666666666543 454555566665 4666555433 332333344433 56


Q ss_pred             CEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEcccc
Q 042603          159 RELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNN  215 (874)
Q Consensus       159 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  215 (874)
                      +.+.+..+ +..+...+|.++ +|+.+.+..+ ++ .+....+..+.+++...+..+
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~  168 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSN  168 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTT
T ss_pred             ccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccc
Confidence            66666554 222333444443 4555544433 22 133335566666666665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=1.2e-08  Score=108.41  Aligned_cols=63  Identities=21%  Similarity=0.353  Sum_probs=28.7

Q ss_pred             cccCCeEecCCcccccchhhhcc---CCCCCCEEECCCCcCccc----CChhhhcCCCCCeEEccCCCCc
Q 042603          693 LTRIRALNLSHNNLTGTIPTTFS---NLKQIESLDLSYNLLHGK----IPPQLIVLNTLAVFRVAYNNLS  755 (874)
Q Consensus       693 l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~l~ls~N~l~  755 (874)
                      +++|++|+|++|.+++..+..+.   .+++|++|||+.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            34555555555555433322222   244555555555555442    2222334455555555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=1e-08  Score=108.91  Aligned_cols=165  Identities=13%  Similarity=0.165  Sum_probs=104.5

Q ss_pred             chhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCcccc--CCCCCCEEEccC--CcCCCCC-Cc
Q 042603          536 LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLC--QLKEVRLIDLSH--NNLSGHI-PP  610 (874)
Q Consensus       536 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~--N~l~~~~-p~  610 (874)
                      +...+..+|+|+.|++++|.-. .++. + .+++|+.|.+..|.+.......+.  .+++|+.|+|+.  |...+.. ..
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            3456677788888888877311 2232 3 378888888888887654333343  688899988863  2211110 01


Q ss_pred             hhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccc
Q 042603          611 CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI  690 (874)
Q Consensus       611 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~  690 (874)
                      .+...                                                ..+..+++|+.|+|++|.+++..+..+
T Consensus       241 ~l~~~------------------------------------------------l~~~~~p~Lr~L~L~~~~i~~~~~~~l  272 (362)
T 2ra8_A          241 VFRPL------------------------------------------------FSKDRFPNLKWLGIVDAEEQNVVVEMF  272 (362)
T ss_dssp             GTGGG------------------------------------------------SCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred             HHHHH------------------------------------------------HhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence            11100                                                000124689999999999875444333


Q ss_pred             c---ccccCCeEecCCcccccch----hhhccCCCCCCEEECCCCcCcccCChhhhc-CCCCCeEEccCCC
Q 042603          691 G---YLTRIRALNLSHNNLTGTI----PTTFSNLKQIESLDLSYNLLHGKIPPQLIV-LNTLAVFRVAYNN  753 (874)
Q Consensus       691 ~---~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~-l~~L~~l~ls~N~  753 (874)
                      .   .+++|++|+|+.|.+++.-    +..+..+++|+.|+|++|.|+...-..+.. +  ...+++++++
T Consensus       273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            3   5789999999999998753    444456799999999999988654444443 2  3456676665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.54  E-value=5.9e-08  Score=92.81  Aligned_cols=123  Identities=13%  Similarity=0.064  Sum_probs=61.0

Q ss_pred             hhhhccCCCCCCEEEccCC-ccccccc---CccccCCCCCcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCC
Q 042603           22 LLQSIASFSSLKYLSMRGC-VLKGALH---GQDFHEFKNLEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNK   96 (874)
Q Consensus        22 ~~~~l~~l~~L~~L~Ls~~-~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~   96 (874)
                      +...+...++|++|+|++| .+.+.-.   ...+...++|++|++++|.+. .....+...+...+.|++|+|++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3455666677777777777 6653211   223445566666666666654 2222333344555566666666666543


Q ss_pred             Cc--cccccccCCCCCcEEEc--CCCCCCCcc----hhcccCCCCCCEEEccCCcC
Q 042603           97 NT--ILDQGLCELVHLQELYI--RDNDLRDSL----LWCLANMTSLQVLNVASNQL  144 (874)
Q Consensus        97 ~~--~~~~~l~~l~~L~~L~L--~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i  144 (874)
                      ..  .+...+...++|++|++  ++|.|....    ...+...++|++|+|++|.+
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            21  12234444555555555  445554321    12233334444444444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=7.8e-08  Score=91.97  Aligned_cols=120  Identities=17%  Similarity=0.129  Sum_probs=93.9

Q ss_pred             CCCCCCCEEecCCC-CCCC---CchhhhccCCCCCCEEEccCCccccccc---CccccCCCCCcEEECCCcccc-ccchh
Q 042603            2 HNFTNLEELILVES-DLHV---SQLLQSIASFSSLKYLSMRGCVLKGALH---GQDFHEFKNLEHLVMDRMLVE-VDTSF   73 (874)
Q Consensus         2 ~~l~~L~~L~Ls~~-~~~~---~~~~~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-~~~~~   73 (874)
                      ...+.|++|+|++| .+..   ..+.+.+...++|++|+|++|.+.+.-.   ...+...++|++|++++|.+. .....
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            45689999999999 8842   3456778889999999999999875421   345567789999999999987 33444


Q ss_pred             HHHHHhcCCCCCEEEc--cccCCCCCcc--ccccccCCCCCcEEEcCCCCCC
Q 042603           74 LQIVSESMASLRILSL--SYSRLNKNTI--LDQGLCELVHLQELYIRDNDLR  121 (874)
Q Consensus        74 ~~~~~~~l~~L~~L~L--s~n~~~~~~~--~~~~l~~l~~L~~L~L~~n~i~  121 (874)
                      +...+...+.|++|+|  ++|.+.....  +...+...++|++|++++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            5566788899999999  8899876432  3456677899999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=1.6e-07  Score=94.15  Aligned_cols=45  Identities=24%  Similarity=0.306  Sum_probs=24.0

Q ss_pred             HhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCC
Q 042603           78 SESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRD  122 (874)
Q Consensus        78 ~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~  122 (874)
                      ..++++|+.|+|++|+++....++..+..+++|+.|+|++|+|++
T Consensus       166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            345566666666666665533333344455555555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=4.9e-07  Score=90.63  Aligned_cols=66  Identities=23%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             ccccCCeEecCCccccc--chhhhccCCCCCCEEECCCCcCcccCChhhhcCC--CCCeEEccCCCCcccCC
Q 042603          692 YLTRIRALNLSHNNLTG--TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN--TLAVFRVAYNNLSGKIP  759 (874)
Q Consensus       692 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~--~L~~l~ls~N~l~~~~p  759 (874)
                      ++++|+.|+||+|+|++  .+|..++.+++|+.|||++|+|++.  +.+..+.  +|+.|++++|++++.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            34455555555555554  2234444555555555555555543  2223332  55555555555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.94  E-value=3.1e-06  Score=78.31  Aligned_cols=84  Identities=11%  Similarity=0.092  Sum_probs=43.2

Q ss_pred             CCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCc-CCCCCcccccCC----CCCCEEEccCCc-CCCCccccccCCCC
Q 042603          108 VHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQ-LTGNFPPGFCEL----VLLRELYIDNND-LRGSLPLCLANLTS  181 (874)
Q Consensus       108 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~  181 (874)
                      ..|+.||+++|.|++.-...+.++++|++|+|++|. ++...-..+..+    ++|++|++++|. ++...-..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666666555544555566666666666653 443222223332    245666665553 44333334455555


Q ss_pred             CCEEEccccc
Q 042603          182 LRVLDVSYNQ  191 (874)
Q Consensus       182 L~~L~L~~n~  191 (874)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            5555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.66  E-value=1.9e-05  Score=73.10  Aligned_cols=83  Identities=12%  Similarity=0.058  Sum_probs=69.5

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCcc-cccchhhhccCC----CCCCEEECCCCc-CcccCChhhhcCCCC
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN-LTGTIPTTFSNL----KQIESLDLSYNL-LHGKIPPQLIVLNTL  744 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~LdLs~N~-l~~~~p~~l~~l~~L  744 (874)
                      .|++||++++.++..--..+..+++|+.|+|++|. +++.--..++.+    ++|++|||++|. |+..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            68999999999987767778899999999999995 887666667765    479999999985 876555677889999


Q ss_pred             CeEEccCCC
Q 042603          745 AVFRVAYNN  753 (874)
Q Consensus       745 ~~l~ls~N~  753 (874)
                      +.|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999885

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.60  E-value=6.2e-05  Score=66.51  Aligned_cols=41  Identities=20%  Similarity=0.343  Sum_probs=25.9

Q ss_pred             CCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          744 LAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       744 L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      |+.|+|++|+|+...+..|..+..++.+++.||||.|+|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            45555555555555555555566666677888999996543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.41  E-value=0.00012  Score=69.02  Aligned_cols=70  Identities=16%  Similarity=0.142  Sum_probs=31.4

Q ss_pred             ccCCCCCCEEEccCC-cccccc---cCccccCCCCCcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCC
Q 042603           26 IASFSSLKYLSMRGC-VLKGAL---HGQDFHEFKNLEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLN   95 (874)
Q Consensus        26 l~~l~~L~~L~Ls~~-~~~~~~---~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~   95 (874)
                      +..-+.|++|+|+++ .+.+.-   ..+++..-+.|+.|+|++|.+. .....+..++..-+.|++|+|+.|.|.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            344455555555553 443210   0223334445555555555544 222333334444455555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.36  E-value=0.0002  Score=67.56  Aligned_cols=116  Identities=11%  Similarity=0.049  Sum_probs=80.4

Q ss_pred             CCCCCEEecCCC-CCC---CCchhhhccCCCCCCEEEccCCccccccc---CccccCCCCCcEEECCCcccc-ccchhHH
Q 042603            4 FTNLEELILVES-DLH---VSQLLQSIASFSSLKYLSMRGCVLKGALH---GQDFHEFKNLEHLVMDRMLVE-VDTSFLQ   75 (874)
Q Consensus         4 l~~L~~L~Ls~~-~~~---~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-~~~~~~~   75 (874)
                      =+.|++|+|+++ .+.   ...+.+.+..-+.|++|+|++|.+.+.-.   .+++..-+.|++|+|++|.+. .....+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            468999999986 774   23467888888999999999999874432   344557789999999999987 3344455


Q ss_pred             HHHhcCCCCCEEEccccCC---CCCc--cccccccCCCCCcEEEcCCCC
Q 042603           76 IVSESMASLRILSLSYSRL---NKNT--ILDQGLCELVHLQELYIRDND  119 (874)
Q Consensus        76 ~~~~~l~~L~~L~Ls~n~~---~~~~--~~~~~l~~l~~L~~L~L~~n~  119 (874)
                      .++..-+.|++|+|+++..   ....  .+.+.+..-+.|+.|+++.|.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            5566677788888876532   2211  123345556667777776554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.24  E-value=0.00039  Score=61.31  Aligned_cols=58  Identities=26%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             ceEEcCCCccc-ccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc
Q 042603          673 SGIDLSCNKLT-GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  732 (874)
Q Consensus       673 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  732 (874)
                      ..++.++++++ ..+|..+.  ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            36889999987 46776655  578999999999998888889999999999999998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	874
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-07
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	6e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 95.5 bits (236), Expect = 1e-21
 Identities = 76/388 (19%), Positives = 127/388 (32%), Gaps = 29/388 (7%)

Query: 152 FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELI 211
           F +  L  ++         +  +   +L  +  L      +    S   + +L ++ ++ 
Sbjct: 16  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQIN 72

Query: 212 LSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFP 271
            SNN       L+ L  L  +   N +I   T     +      L +  ++         
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 272 KFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHC------ 325
                +   N                L   N       LAN +      +  +       
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 326 ---LQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD 382
              L  L +L  +NN      P+ I T L     L+L+ N        + A +  L  LD
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 383 ISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIP 442
           ++ NQ++   P     G   L  L L  N +     S    LT L  L+L+ N+     P
Sbjct: 248 LANNQISNLAPL---SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP 302

Query: 443 ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL 502
            S      L  L L  N++S   P  + SL  LQ +   NN +     +    L  +  L
Sbjct: 303 IS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWL 356

Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKN 530
              +N I    P   +L  I Q+ L+  
Sbjct: 357 SAGHNQISDLTPLA-NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 5e-15
 Identities = 56/397 (14%), Positives = 125/397 (31%), Gaps = 43/397 (10%)

Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS-LEILALS 409
           L   M   L +     ++  S  D+  + +L      +         +   + L  +  S
Sbjct: 21  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK----SIDGVEYLNNLTQINFS 74

Query: 410 NNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWL 469
           NN L      +  NLT L  + ++ N+     P +                 +       
Sbjct: 75  NNQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNL-----TGLTLFNNQITDIDP 127

Query: 470 GSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSK 529
              L   + +  ++N    I          ++   +  +    L +  +L  ++      
Sbjct: 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187

Query: 530 NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLC 589
           + I    +           L  + N++    P  I     L  + L  N ++      L 
Sbjct: 188 SDISVLAKLTNLES-----LIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLA 238

Query: 590 QLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGK 649
            L  +  +DL++N +S   P   +              T     A  +S   P    +  
Sbjct: 239 SLTNLTDLDLANNQISNLAPLSGLTKL-----------TELKLGANQISNISPLAG-LTA 286

Query: 650 EETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT 709
              ++     +        L +++ + L  N ++   P  +  LT+++ L  ++N ++  
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD- 343

Query: 710 IPTTFSNLKQIESLDLSYNLLHGKIP----PQLIVLN 742
             ++ +NL  I  L   +N +    P     ++  L 
Sbjct: 344 -VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.0 bits (157), Expect = 1e-11
 Identities = 63/360 (17%), Positives = 109/360 (30%), Gaps = 38/360 (10%)

Query: 76  IVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQ 135
           +    +  +  L      +        G+  L +L ++   +N L D  +  L N+T L 
Sbjct: 38  VSQTDLDQVTTLQADRLGIKSID----GVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 91

Query: 136 VLNVA--------------SNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTS 181
            + +               +      F     ++  L+ L   N     S  +   +  S
Sbjct: 92  DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 151

Query: 182 LRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYA 241
                   +   +     PL +LT++E L +S+N       L  L NL  L   N +I  
Sbjct: 152 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 211

Query: 242 ETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNN----------ADLSHLNLS 291
            T     +   +  L    L   G   +           N             L+ L L 
Sbjct: 212 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 271

Query: 292 GEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYL 351
               + +           L  N        PI  L+ L  L +  N      PV     L
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS---SL 328

Query: 352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN 411
             L  L  + N  +    SS A++  +  L   +NQ++   P         +  L L++ 
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 7e-11
 Identities = 49/213 (23%), Positives = 82/213 (38%), Gaps = 22/213 (10%)

Query: 152 FCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELI 211
             +L  L  L   NN +    PL    LT+L  L ++ NQL +      L  LT++ +L 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD---IGTLASLTNLTDLD 247

Query: 212 LSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISL-SGYGDGGTF 270
           L+NN       L  L  L++LK    +I         +++P   LT+++      +    
Sbjct: 248 LANNQISNLAPLSGLTKLTELKLGANQIS--------NISPLAGLTALTNLELNENQLED 299

Query: 271 PKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLA 330
              + +  +L    L   N+S   P     + T L+ L  ANN +       +  L  + 
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDV--SSLANLTNIN 354

Query: 331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNA 363
            L   +N      P+     L  +  L L+  A
Sbjct: 355 WLSAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 7e-11
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 14/171 (8%)

Query: 46  LHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVS-ESMASLRILSLSYSRLNKNTILDQGL 104
           L+G    +   L  L     L   +     +     +  L  L L  ++++        L
Sbjct: 226 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN----ISPL 281

Query: 105 CELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYID 164
             L  L  L + +N L D     ++N+ +L  L +  N ++         L  L+ L+  
Sbjct: 282 AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFA 337

Query: 165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNN 215
           NN +       LANLT++  L   +NQ+++     PL +LT I +L L++ 
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 7e-10
 Identities = 64/391 (16%), Positives = 116/391 (29%), Gaps = 62/391 (15%)

Query: 326 LQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISY 385
           L ++ TL        G   ++   YL  L  +N S N      P    ++  L  + ++ 
Sbjct: 43  LDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97

Query: 386 NQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL 445
           NQ+    P         L +       +         N   L    +     +  +    
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 446 SKCY------------LLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEF 493
              +            L     L  +         L  L  L+ +I  NN +    P   
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 494 CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553
                L  L L+ N +   + +  SL ++  + L+ N+I       +     L  L L  
Sbjct: 218 LT--NLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272

Query: 554 NRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLV 613
           N++    P                N  + E    +  LK +  + L  NN+S  I P   
Sbjct: 273 NQISNISPLAGLTALTNLE----LNENQLEDISPISNLKNLTYLTLYFNNISD-ISPVSS 327

Query: 614 NTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMS 673
            T L   ++          +   +S      +                       LT+++
Sbjct: 328 LTKLQRLFF----------ANNKVSDVSSLAN-----------------------LTNIN 354

Query: 674 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHN 704
            +    N+++   P  +  LTRI  L L+  
Sbjct: 355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 49/265 (18%), Positives = 96/265 (36%), Gaps = 18/265 (6%)

Query: 502 LDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP 561
             L   ++  T+ S   L  +  +   +  I+  ++ +  Y   L  ++ S N+L    P
Sbjct: 27  TVLGKTNVTDTV-SQTDLDQVTTLQADRLGIK-SIDGV-EYLNNLTQINFSNNQLTDITP 83

Query: 562 NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRL-------IDLSHNNLSGHIPPCLVN 614
             +  L +L  IL+ NN I    P+                       NL+      L +
Sbjct: 84  --LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 615 TALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSG 674
             +S+    +   +    S           + +   E +  ++  +S       LT++  
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 675 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 734
           +  + N+++   P  I   T +  L+L+ N L      T ++L  +  LDL+ N +    
Sbjct: 202 LIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 735 PPQLIVLNTLAVFRVAYNNLSGKIP 759
           P  L  L  L   ++  N +S   P
Sbjct: 258 P--LSGLTKLTELKLGANQISNISP 280

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 87.1 bits (214), Expect = 4e-19
 Identities = 57/270 (21%), Positives = 97/270 (35%), Gaps = 12/270 (4%)

Query: 470 GSLLALQDIIMPNNNLEG--PIPNEFCQLDCLKVLDLSN--NSIFGTLPSCLSLGSIEQV 525
                + ++ +   NL    PIP+    L  L  L +    N +    P+   L  +  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 526 HLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIP 585
           +++   + G +   +     LVTLD SYN L G++P  I  LP L  I    N I G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 586 VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGS 645
                  ++        N      P             +                   GS
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD-------ASVLFGS 219

Query: 646 PMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN 705
               ++             +  +  +++G+DL  N++ G +P  +  L  + +LN+S NN
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 706 LTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735
           L G IP    NL++ +    + N      P
Sbjct: 280 LCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 83.6 bits (205), Expect = 6e-18
 Identities = 55/292 (18%), Positives = 103/292 (35%), Gaps = 36/292 (12%)

Query: 499 LKVLDLSNNSIFGTLPSCLSLG---SIEQVHLSKN-KIEGQLESIIHYYPYLVTLDLSYN 554
           +  LDLS  ++    P   SL     +  +++     + G +   I     L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 555 RLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
            + G+IP+++ ++  L  +  + N + G +P  +  L  +  I    N +SG IP     
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD---- 167

Query: 615 TALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSG 674
              S G +  +  +   +        PP  + +                         + 
Sbjct: 168 ---SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 675 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 734
                         ++G    +  L+L +N + GT+P   + LK + SL++S+N      
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN------ 278

Query: 735 PPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSK 786
                             NL G+IP        F+  +Y  N  LCG PL  
Sbjct: 279 ------------------NLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.8 bits (182), Expect = 5e-15
 Identities = 56/248 (22%), Positives = 83/248 (33%), Gaps = 2/248 (0%)

Query: 378 LKSLDISYNQLTGAIPERMAMGCFS-LEILALSNNT-LQGHIFSEKFNLTNLKRLQLDGN 435
           + +LD+S   L    P   ++     L  L +     L G I      LT L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 436 KFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQ 495
              G IP+ LS+   L  L  S N LSG +P  + SL  L  I    N + G IP+ +  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNR 555
              L      + +                       +     S++               
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 556 LHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNT 615
                   +     L+ + L NN I G +P  L QLK +  +++S NNL G IP      
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 616 ALSEGYYD 623
                 Y 
Sbjct: 292 RFDVSAYA 299

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.6 bits (179), Expect = 1e-14
 Identities = 54/255 (21%), Positives = 91/255 (35%), Gaps = 7/255 (2%)

Query: 280 LNNADLSHLNLSGEFPNWLPE---NNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSN 336
           +NN DLS LNL   +P  +P    N   L  L +   +       P              
Sbjct: 52  VNNLDLSGLNLPKPYP--IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 337 NFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERM 396
           +  +     +  + +  L+ L+ S NA +G++P S + +  L  +    N+++GAIP+  
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 397 AMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYL 456
                    + +S N L G I     NL                     S          
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 457 SDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSC 516
            ++         L   L   D  + NN + G +P    QL  L  L++S N++ G +P  
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLD--LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 517 LSLGSIEQVHLSKNK 531
            +L   +    + NK
Sbjct: 288 GNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 47/277 (16%), Positives = 86/277 (31%), Gaps = 10/277 (3%)

Query: 175 CLANLTSLRV--LDVSYNQLTENISSSP-LMHLTSIEELILSNNHFQIPISLEPLFNLSK 231
           C  +  + RV  LD+S   L +       L +L  +  L +   +  +      +  L++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 232 LKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLS 291
           L          + +  + L+    L ++  S     GT P  +    +L         +S
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 292 GEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYL 351
           G  P+     +    ++ ++ N L G        L          +  +      +    
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD---LSRNMLEGDASVLFGS 219

Query: 352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN 411
                                   K L  LD+  N++ G +P+ +      L  L +S N
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFN 278

Query: 412 TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKC 448
            L G I  +  NL          NK +   P  L  C
Sbjct: 279 NLCGEI-PQGGNLQRFDVSAYANNKCLCGSP--LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 2e-11
 Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 8/256 (3%)

Query: 158 LRELYIDNNDLRGSLPL--CLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNN 215
           +  L +   +L    P+   LANL  L  L +             +  LT +  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 216 HFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLY 275
           +    I       +  L T +    A + +   S++    L  I+  G    G  P    
Sbjct: 112 NVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 276 HQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVS 335
               L  +     N        +P    +L    +  +         +       T  + 
Sbjct: 171 SFSKLFTSMTISRN---RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 336 NNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPER 395
                    +        L  L+L  N   G++P     +K L SL++S+N L G IP+ 
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 396 MAMGCFSLEILALSNN 411
             +     ++ A +NN
Sbjct: 288 GNLQ--RFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 126 WCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVL 185
             +    +L  L++ +N++ G  P G  +L  L  L +  N+L G +P    NL    V 
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVS 296

Query: 186 DVSYNQL 192
             + N+ 
Sbjct: 297 AYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 7e-07
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 162 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
            + NN + G+LP  L  L  L  L+VS+N L   I      +L   +    +NN  
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 4e-05
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 114 YIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLP 173
            +R+N +  +L   L  +  L  LNV+ N L G  P     L         NN      P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

Query: 174 L 174
           L
Sbjct: 309 L 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 52/261 (19%), Positives = 84/261 (32%), Gaps = 24/261 (9%)

Query: 84  LRILSLSYSRLNKNTILDQGLCELVHLQELYIRDND-LRDSLLWCLANMTSLQVLNVASN 142
           +  L LS   L K   +   L  L +L  LYI   + L   +   +A +T L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 143 QLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLM 202
            ++G  P    ++  L  L    N L G+LP  +++L +L  +    N+++  I  S   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 203 HLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQL------ 256
                  + +S N     I              +  +     S         Q       
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 257 ---------------TSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPEN 301
                            + L      GT P+ L     L++ ++S  NL GE P     N
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GN 289

Query: 302 NTDLKTLLLANNSLFGSFRMP 322
                    ANN       +P
Sbjct: 290 LQRFDVSAYANNKCLCGSPLP 310

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (202), Expect = 8e-18
 Identities = 53/268 (19%), Positives = 81/268 (30%), Gaps = 8/268 (2%)

Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
           L  +PV I         + L  N  +    +SF   + L  L +  N L           
Sbjct: 23  LQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79

Query: 400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 459
               ++    N  L+    +    L  L  L LD        P        L  LYL DN
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

Query: 460 HLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-S 518
            L          L  L  + +  N +       F  L  L  L L  N +    P     
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 519 LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANN 578
           LG +  ++L  N +       +     L  L L+ N               L     +++
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSS 258

Query: 579 YIEGEIPVQLCQLKEVRLIDLSHNNLSG 606
            +   +P    +L    L  L+ N+L G
Sbjct: 259 EVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 7e-14
 Identities = 58/251 (23%), Positives = 91/251 (36%), Gaps = 5/251 (1%)

Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHI 343
            L    +S            +L  L L +N L          L  L  LD+S+N  L  +
Sbjct: 38  FLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 344 PVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL 403
                  L  L  L+L R       P  F  +  L+ L +  N L   +P+       +L
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNL 155

Query: 404 EILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 463
             L L  N +          L +L RL L  N+     P +      L  LYL  N+LS 
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 464 KIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIE 523
                L  L ALQ + + +N               L+    S++ +  +LP  L+   ++
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRLAGRDLK 274

Query: 524 QVHLSKNKIEG 534
           +  L+ N ++G
Sbjct: 275 R--LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 2e-12
 Identities = 46/293 (15%), Positives = 83/293 (28%), Gaps = 19/293 (6%)

Query: 175 CLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKT 234
           C+               L       P     + + + L  N     +          L  
Sbjct: 6   CVCYNEPKVTTSCPQQGLQAVPVGIP----AASQRIFLHGNRISH-VPAASFRACRNLTI 60

Query: 235 FNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEF 294
                              F   ++            + +          L  L+L    
Sbjct: 61  LWLHSN----VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

Query: 295 PNWLPENNTD----LKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTY 350
              L          L+ L L +N+L          L  L  L +  N  +  +P      
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRG 175

Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
           L  L  L L +N      P +F D+  L +L +  N L+  +P        +L+ L L++
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLND 234

Query: 411 NTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 463
           N       +       L++ +   ++    +P+ L+   L     L+ N L G
Sbjct: 235 NPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 40/189 (21%), Positives = 64/189 (33%), Gaps = 2/189 (1%)

Query: 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNN 484
              +R+ L GN+       S   C  L  L+L  N L+         L  L+ + + +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 485 LEGPI-PNEFCQLDCLKVLDLSNNSIFGTLPSCLSL-GSIEQVHLSKNKIEGQLESIIHY 542
               + P  F  L  L  L L    +    P       +++ ++L  N ++   +     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN 602
              L  L L  NR+          L  L  +LL  N +    P     L  +  + L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 603 NLSGHIPPC 611
           NLS      
Sbjct: 212 NLSALPTEA 220

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 43/300 (14%), Positives = 89/300 (29%), Gaps = 38/300 (12%)

Query: 435 NKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFC 494
            + +  +P  +        ++L  N +S        +   L  + + +N L       F 
Sbjct: 20  QQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 495 QLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS 552
            L  L+ LDLS+N+   ++       LG +  +HL +  ++     +      L  L L 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 553 YNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCL 612
            N L     +    L  L+++ L  N I          L  +  + L  N ++   P   
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 613 VNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSM 672
            +                                      +     +         L ++
Sbjct: 198 RDL------------------------------GRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 673 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 732
             + L+ N    +          ++    S + +  ++P     L   +   L+ N L G
Sbjct: 228 QYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 5e-08
 Identities = 40/238 (16%), Positives = 64/238 (26%), Gaps = 8/238 (3%)

Query: 547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606
           VT       L  ++P  I        I L  N I           + + ++ L  N L+ 
Sbjct: 14  VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 607 HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRG 666
                    AL E    +                            +             
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG-----RLHTLHLDRCGLQELGPGLF 125

Query: 667 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS 726
           R L ++  + L  N L          L  +  L L  N ++      F  L  ++ L L 
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 727 YNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784
            N +    P     L  L    +  NNLS    + +A     +      NP++C    
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 25/189 (13%)

Query: 99  ILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLL 158
           +       L  L  L++    L++        + +LQ L +  N L       F +L  L
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 159 RELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE-----------------------N 195
             L++  N +          L SL  L +  N++                          
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 196 ISSSPLMHLTSIEELILSNNHFQIPISLEPLF-NLSKLKTFNGEIYAETESHYNSLTPKF 254
           + +  L  L +++ L L++N +       PL+  L K +  + E+             K 
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK- 274

Query: 255 QLTSISLSG 263
           +L +  L G
Sbjct: 275 RLAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 3e-14
 Identities = 49/309 (15%), Positives = 94/309 (30%), Gaps = 42/309 (13%)

Query: 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNN 484
            +   L L  NK              L  L L +N +S   P     L+ L+ + +  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYP 544
           L+         L  L+V +     +  ++ + L+   + ++  +  K  G          
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 545 YLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL 604
            L  + ++   +  +IP  +   P L+ + L  N I       L  L  +  + LS N++
Sbjct: 151 KLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 605 SGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYY 664
           S                          A+ P L     N + + K        K +    
Sbjct: 208 SAVDNGS-------------------LANTPHLRELHLNNNKLVKVPGGLADHKYIQV-- 246

Query: 665 RGRILTSMSGIDLSCNKLTG------EIPTQIGYLTRIRALNLSHNNLTGT--IPTTFSN 716
                     + L  N ++         P           ++L  N +      P+TF  
Sbjct: 247 ----------VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

Query: 717 LKQIESLDL 725
           +    ++ L
Sbjct: 297 VYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.5 bits (166), Expect = 5e-13
 Identities = 53/288 (18%), Positives = 94/288 (32%), Gaps = 38/288 (13%)

Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
               +L++ +N++T      F  L  L  L + NN +    P   A L  L  L +S NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLT 251
           L       P     +++EL +  N                          +      +  
Sbjct: 91  LK----ELPEKMPKTLQELRVHENEIT-----------------------KVRKSVFNGL 123

Query: 252 PKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLA 311
            +  +  +  +     G           L+   ++  N++   P  LP +   L  L L 
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLD 179

Query: 312 NNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSS 371
            N +       +  L  LA L +S N              P L  L+L+ N     +P  
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV-KVPGG 237

Query: 372 FADMKMLKSLDISYNQLTG-----AIPERMAMGCFSLEILALSNNTLQ 414
            AD K ++ + +  N ++        P        S   ++L +N +Q
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 52/228 (22%), Positives = 87/228 (38%), Gaps = 26/228 (11%)

Query: 402 SLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 461
              +L L NN +      +  NL NL  L L  NK     P + +    L  LYLS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 462 SGKIPRWLGSLLALQ-----------------------DIIMPNNNLEGPIPNEFCQLDC 498
                +   +L  L+                       ++        G     F  +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 499 LKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG 558
           L  + +++ +I  T+P  L   S+ ++HL  NKI     + +     L  L LS+N +  
Sbjct: 152 LSYIRIADTNI-TTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 559 SIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606
                +   P L  + L NN +  ++P  L   K ++++ L +NN+S 
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 49/278 (17%), Positives = 85/278 (30%), Gaps = 21/278 (7%)

Query: 180 TSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ--IPISLEPLFNLSKLKTFNG 237
               +LD+  N++TE I      +L ++  LIL NN      P +  PL  L +L     
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 238 EIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNW 297
           ++          L  K   T   L  + +  T  +            +       +    
Sbjct: 90  QL--------KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 298 LPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHL 357
                  +K L     +      +P      L  L +  N         +   L  L  L
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL-KGLNNLAKL 200

Query: 358 NLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQG-- 415
            LS N+ +     S A+   L+ L ++ N+L              ++++ L NN +    
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAIG 258

Query: 416 ----HIFSEKFNLTNLKRLQLDGNKF-IGEIPESLSKC 448
                         +   + L  N     EI  S  +C
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 50/280 (17%), Positives = 86/280 (30%), Gaps = 34/280 (12%)

Query: 82  ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVAS 141
               +L L  +++ +  I D     L +L  L + +N +        A +  L+ L ++ 
Sbjct: 31  PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 142 NQLTGNFPPGFCELVLLR-----------------------ELYIDNNDLRGSLPLCLAN 178
           NQL          L  LR                       EL  +     G        
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ--IPISLEPLFNLSKLKTFN 236
           +  L  + ++   +T    + P     S+ EL L  N        SL+ L NL+KL    
Sbjct: 149 MKKLSYIRIADTNIT----TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 237 GEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQH-DLNNADLSHLNLSGEFP 295
             I A       +     +L   +       G      Y Q   L+N ++S +  +   P
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 296 NWLPENNTDLKTLLLANNSLFGSFRMP--IHCLQKLATLD 333
                       + L +N +      P    C+   A + 
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 43/255 (16%), Positives = 85/255 (33%), Gaps = 35/255 (13%)

Query: 499 LKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG 558
           L+V+  S+  +   +P  L       + L  NKI    +        L TL L  N++  
Sbjct: 12  LRVVQCSDLGL-EKVPKDLPP-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 559 SIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALS 618
             P     L +L  + L+ N ++         L+E+R+ +     +   +   L    + 
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 619 EGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLS 678
           E                +          M K   ++    N++   +G +  S++ + L 
Sbjct: 130 E---------LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLD 179

Query: 679 CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI-----------------------PTTFS 715
            NK+T      +  L  +  L LS N+++                          P   +
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 716 NLKQIESLDLSYNLL 730
           + K I+ + L  N +
Sbjct: 240 DHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 4e-07
 Identities = 48/269 (17%), Positives = 92/269 (34%), Gaps = 22/269 (8%)

Query: 1   LHNFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHL 60
             N  NL  LIL+ + +       + A    L+ L +    LK  L  +     + L   
Sbjct: 51  FKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVH 108

Query: 61  VMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDL 120
             +       T   + V   +  + ++ L  + L  + I +     +  L  + I D ++
Sbjct: 109 ENEI------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 121 RDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLT 180
                       SL  L++  N++T         L  L +L +  N +       LAN  
Sbjct: 163 TT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 181 SLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNH--------FQIPISLEPLFNLSKL 232
            LR L ++ N+L +            I+ + L NN+        F  P       + S +
Sbjct: 220 HLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

Query: 233 KTFNGEIYAETESHYNSLTPKFQLTSISL 261
             F+  +    E   ++    +   ++ L
Sbjct: 278 SLFSNPV-QYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 37/215 (17%), Positives = 66/215 (30%), Gaps = 12/215 (5%)

Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
           +    + +DL  NK+T         L  +  L L +N ++   P  F+ L ++E L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 728 NLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFE------EDSYEGNPFLCG 781
           N L          L  L V       +   + + + Q    E      + S   N    G
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 782 LP--LSKSCDDNGLTTVTTEAYTENEEGDSLIDMDSFLITFTVSYGIVIIGIIGVLYINP 839
           +         D  +TT+         E    + +D   IT   +  +  +  +  L ++ 
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTE----LHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 840 YWRRRWFYLVEVCMTSCYYFVADNLTLRRFYRGWM 874
                                 +N  L +   G  
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 4e-11
 Identities = 41/285 (14%), Positives = 89/285 (31%), Gaps = 21/285 (7%)

Query: 331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 390
           TLD++       +   +     G++     R+  +  +   F+  + ++ +D+S + +  
Sbjct: 4   TLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 391 AIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL 450
           +    +   C  L+ L+L    L   I +     +NL RL L G     E          
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 451 LGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIF 510
                L+ +       + +   +A     +   NL G   N         V    N    
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 511 GTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY-NRLHGSIPNWIDKLPQ 569
               S                ++           YL  L LS    +       + ++P 
Sbjct: 181 DLSDSV--------------MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 570 LSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
           L  + +     +G + +    L  ++   ++ ++ +    P + N
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 37/274 (13%), Positives = 75/274 (27%), Gaps = 15/274 (5%)

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEG-QLESII 540
             NL   +         +       + +   L    S   ++ + LS + IE   L  I+
Sbjct: 9   GKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67

Query: 541 HYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLS 600
                L  L L   RL   I N + K   L  +   N            Q        L 
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL---NLSGCSGFSEFALQTLLSSCSRLD 124

Query: 601 HNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNM 660
             NLS        +  ++  +        + +            + + +   +     + 
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184

Query: 661 SYYYRGRILTSMSG------IDLS-CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT 713
           S   +               + LS C  +  E   ++G +  ++ L +      GT+   
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244

Query: 714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVF 747
              L     L ++ +       P +       ++
Sbjct: 245 KEALPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 41/272 (15%), Positives = 81/272 (29%), Gaps = 22/272 (8%)

Query: 135 QVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE 194
           Q L++    L  +          +       + +   L    +    ++ +D+S + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60

Query: 195 NISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKF 254
           +     L   + ++ L L       PI +  L   S L   N    +             
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 255 QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNS 314
                 L+         K +       +  ++ LNLSG   N    +             
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD------------- 166

Query: 315 LFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSR-NAFNGSIPSSFA 373
                   +     L  LD+S++  L +   +    L  L HL+LSR             
Sbjct: 167 ----LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222

Query: 374 DMKMLKSLDISYNQLTGAIPERMAMGCFSLEI 405
           ++  LK+L +      G + + +      L+I
Sbjct: 223 EIPTLKTLQVFGIVPDGTL-QLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 8e-05
 Identities = 39/265 (14%), Positives = 80/265 (30%), Gaps = 21/265 (7%)

Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHI 343
           DL+  NL  +    L      +       + +            ++  +D+SN+      
Sbjct: 6   DLTGKNLHPDVTGRLLSQG--VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVST 62

Query: 344 PVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL 403
              I +    L +L+L     +  I ++ A    L  L++S          +  +     
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC-- 120

Query: 404 EILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 463
                  + L     S  F+ T         +        +LS           +   S 
Sbjct: 121 -------SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-------KNLQKSD 166

Query: 464 KIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFG--TLPSCLSLGS 521
                      +   +  +  L+     EF QL+ L+ L LS        TL     + +
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 522 IEQVHLSKNKIEGQLESIIHYYPYL 546
           ++ + +     +G L+ +    P+L
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHL 251

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 675 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 734
           +DL+   L  ++  ++     + A     + +   +   FS  + ++ +DLS +++    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 735 PPQLIV-LNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 780
              ++   + L    +    LS  I + +A+ S     +  G     
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 109

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 8/208 (3%)

Query: 323 IHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD 382
           +  +     ++      L  +P ++         L+LS N       ++      L  L+
Sbjct: 6   VSKVASHLEVNCDKRN-LTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 383 ISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIP 442
           +   +    + +    G   +      ++     +      L  L  L +  N+      
Sbjct: 62  LDRAE----LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 443 ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL 502
            +L     L  LYL  N L    P  L     L+ + + NNNL          L+ L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKN 530
            L  NS++           +    L  N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 3e-09
 Identities = 35/220 (15%), Positives = 57/220 (25%), Gaps = 19/220 (8%)

Query: 515 SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL 574
               + S  +V+  K  +      +         L LS N L+      +    +L+ + 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 575 LANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASA 634
           L    +                       L           +L        A T    S 
Sbjct: 62  LDRAELTKLQVDGTLP------------VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 635 PALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDL---SCNKLTGEIPTQIG 691
             L+  P        E    +   N        +LT    ++    + N LT      + 
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 692 YLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731
            L  +  L L  N+L  TIP  F     +    L  N   
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 39/202 (19%), Positives = 64/202 (31%), Gaps = 10/202 (4%)

Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHI 343
           +    NL+   P  LP++      L L+ N L+      +    +L  L++         
Sbjct: 16  NCDKRNLT-ALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LT 68

Query: 344 PVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL 403
            +++   LP L  L+LS N              +           +  +P     G   L
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLGALRGLGEL 126

Query: 404 EILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 463
           + L L  N L+            L++L L  N         L+    L  L L +N L  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185

Query: 464 KIPRWLGSLLALQDIIMPNNNL 485
            IP+       L    +  N  
Sbjct: 186 TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 40/211 (18%), Positives = 59/211 (27%), Gaps = 10/211 (4%)

Query: 130 NMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSY 189
            + S   +N     LT   PP   +      L++  N L       L   T L  L++  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 190 NQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNS 249
            +LT+      L  L ++      +       SL  L       T     +    S    
Sbjct: 65  AELTKLQVDGTLPVLGTL------DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 250 LTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLL 309
                           +  T P  L              N   E P  L     +L TLL
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 310 LANNSLFGSFRMPIHCLQKLATLDVSNNFFL 340
           L  NSL+ +          L    +  N +L
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 6/192 (3%)

Query: 423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482
            + +   +  D       +P  L K      L+LS+N L       L     L  + +  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL-- 62

Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHY 542
           +  E         L  L  LDLS+N +        +L ++  + +S N++       +  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN 602
              L  L L  N L    P  +   P+L  + LANN +       L  L+ +  + L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 603 NLSGHIPPCLVN 614
           +L   IP     
Sbjct: 183 SLY-TIPKGFFG 193

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 40/267 (14%), Positives = 66/267 (24%), Gaps = 61/267 (22%)

Query: 173 PLC-LANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSK 231
           P+C ++ + S   ++     LT      P         L LS N                
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLL-------------- 43

Query: 232 LKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLS 291
                            +L P  +LT ++L            L     L       L+ +
Sbjct: 44  -----------YTFSLATLMPYTRLTQLNLDRA-----ELTKLQVDGTLPVLGTLDLSHN 87

Query: 292 GEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYL 351
                 L        T+L  + +   S  +                  L  +P  + T  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN 411
           P L  L+L+ N            ++ L +L +  N L                       
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY---------------------- 185

Query: 412 TLQGHIFSEKFNLTNLKRLQLDGNKFI 438
                I    F    L    L GN ++
Sbjct: 186 ----TIPKGFFGSHLLPFAFLHGNPWL 208

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (136), Expect = 4e-09
 Identities = 55/477 (11%), Positives = 115/477 (24%), Gaps = 42/477 (8%)

Query: 108 VHLQELYIRDNDLRDS-LLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
           + +Q L I+  +L D+     L  +   QV+ +    LT                     
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC----------------- 44

Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLT----ENISSSPLMHLTSIEELILSNNHFQIPIS 222
                +   L    +L  L++  N+L       +          I++L L N        
Sbjct: 45  ---KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

Query: 223 LEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNN 282
                 L  L T      ++       L    +                  L        
Sbjct: 102 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161

Query: 283 ADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGH 342
           A +       +       +  +    +L                 KL +  V+++     
Sbjct: 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQ---GLKDSPCQLEALKLESCGVTSDNCRDL 218

Query: 343 IPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS 402
             +         + L  ++    G        +     L   +    G   +     C  
Sbjct: 219 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 278

Query: 403 LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462
           L                       L    L+    +  +             + S     
Sbjct: 279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 338

Query: 463 GKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI----FGTLPSCLS 518
            +    L       +  + +  +             L+VL L++  +      +L + L 
Sbjct: 339 NRFLLELQI----SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 394

Query: 519 -LGSIEQVHLSKNKIEGQ-----LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQ 569
              S+ ++ LS N +        +ES+      L  L L        + + +  L +
Sbjct: 395 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 3e-08
 Identities = 47/443 (10%), Positives = 101/443 (22%), Gaps = 33/443 (7%)

Query: 329 LATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG----SIPSSFADMKMLKSLDIS 384
           + +LD+           E+   L     + L            I S+      L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 385 YNQLTG----AIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGE 440
            N+L       + + +      ++ L+L N  L G       +         + +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 441 IPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLK 500
           + ++  +    G L         ++     S  + + +                  D  +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 501 VLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI 560
                        P  L    +E   ++ +        +            S       +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 561 PNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEG 620
                 L   S  L      E  I  + C      L               L +      
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 621 YYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRIL----------- 669
               + P     S    S              +      +        L           
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 670 -----TSMSGIDLSCNKLTGE----IPTQIGYLTRIRALNLSHNNLTGTIPTTFS----- 715
                + +  + L+   ++      +   +     +R L+LS+N L              
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 716 NLKQIESLDLSYNLLHGKIPPQL 738
               +E L L       ++  +L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 9e-08
 Identities = 58/468 (12%), Positives = 115/468 (24%), Gaps = 38/468 (8%)

Query: 158 LRELYIDNNDLRGS-LPLCLANLTSLRVLDVSYNQLTENIS---SSPLMHLTSIEELILS 213
           ++ L I   +L  +     L  L   +V+ +    LTE      SS L    ++ EL L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 214 NNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKF 273
           +N     + +  +    +                   TP  ++  +SL      G     
Sbjct: 64  SNELG-DVGVHCVLQGLQ-------------------TPSCKIQKLSLQNCCLTGAGCGV 103

Query: 274 LYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLD 333
           L                     + L  +           +      ++ +      A   
Sbjct: 104 LSSTLRTLPTLQEL-----HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 158

Query: 334 VSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIP 393
                 L   P      +                +  S   ++ LK              
Sbjct: 159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 218

Query: 394 ERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGG 453
             +     SL  LAL +N L     +E          +L           +     L   
Sbjct: 219 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 278

Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
           L   ++     +          + +          + + + +         S+ S     
Sbjct: 279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 338

Query: 514 PSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG----SIPNWIDKLPQ 569
              L    I    L    +    + +      L  L L+   +      S+   +     
Sbjct: 339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398

Query: 570 LSYILLANNYIEGEIPVQLCQ-----LKEVRLIDLSHNNLSGHIPPCL 612
           L  + L+NN +     +QL +        +  + L     S  +   L
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 9e-06
 Identities = 49/448 (10%), Positives = 106/448 (23%), Gaps = 35/448 (7%)

Query: 83  SLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRD----SLLWCLANMTSLQVLN 138
            ++ L +    L+ +    + L  L   Q + + D  L +     +   L    +L  LN
Sbjct: 3   DIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 139 VASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS 198
           + SN+L         + +      I    L+               L         ++S 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 199 SPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTS 258
           + L             +       L+  +      +                        
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 259 ISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANN----- 313
                                L        + +      +  +   L+ L L +N     
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 314 SLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA 373
            +       +H   +L TL +           ++   L     L     A N        
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 374 DMKMLKSLD--------ISYNQLTGAIPERMA--------MGCFSLEILALSNNTLQGHI 417
            +               +     T A     +        +    +    L +  ++   
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 418 FSEKFNLTNLKRLQLDGNKF----IGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLL 473
                  + L+ L L            +  +L   + L  L LS+N L       L   +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 474 -----ALQDIIMPNNNLEGPIPNEFCQL 496
                 L+ +++ +      + +    L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 10/96 (10%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 521 SIEQVHLSKNKI-EGQLESIIHYYPYLVTLDLSYNRLHG----SIPNWIDKLPQLSYILL 575
            I+ + +   ++ + +   ++        + L    L       I + +   P L+ + L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPC 611
            +N +       + Q  +     +   +L       
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 9e-04
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 13/118 (11%)

Query: 59  HLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTI--LDQGLCELVHLQELYIR 116
            +  +R+         Q + +  + LR+L L+   ++ ++   L   L     L+EL + 
Sbjct: 346 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 405

Query: 117 DNDLRDSLLWCLA-----NMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLR 169
           +N L D+ +  L          L+ L +     +            L+ L  D   LR
Sbjct: 406 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 109 HLQELYIRDNDLRD----SLLWCLANMTSLQVLNVASNQLTGNFPPGFCELV-----LLR 159
            L+ L++ D D+ D    SL   L    SL+ L++++N L         E V     LL 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 160 ELYIDNNDLRGSLPLCLANL----TSLRVL 185
           +L + +      +   L  L     SLRV+
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 15/104 (14%)

Query: 319 FRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYL---PGLMHLNLSRNAFNGSIPSSFAD- 374
            +        L  L +++          +   L     L  L+LS N    +      + 
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 375 ----MKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ 414
                 +L+ L +     +  + +        L+ L     +L+
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMED-------RLQALEKDKPSLR 457

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 53/329 (16%), Positives = 95/329 (28%), Gaps = 28/329 (8%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
             EL ++N  L  SLP        L  L  S N LTE +   P     S++ L++ NN+ 
Sbjct: 40  AHELELNNLGLS-SLP---ELPPHLESLVASCNSLTE-LPELP----QSLKSLLVDNNNL 90

Query: 218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ 277
           +    L PL     +     E   E ++            S+                + 
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 278 HDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATL----- 332
                 +L +L                    L   + + G+  +      +         
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 333 -----DVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ 387
                  +       +               L ++     +  +          ++ Y  
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 388 LTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSK 447
            +      +     SLE L +SNN L   + +       L+RL    N  + E+PE    
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNH-LAEVPELPQN 325

Query: 448 CYLLGGLYLSDNHLSGKIPRWLGSLLALQ 476
              L  L++  N L  + P    S+  L+
Sbjct: 326 ---LKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 6e-07
 Identities = 57/333 (17%), Positives = 102/333 (30%), Gaps = 25/333 (7%)

Query: 127 CLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLD 186
           CL        L + +  L+ + P        L  L    N L   LP    +L SL V +
Sbjct: 35  CLDR--QAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDN 87

Query: 187 VSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESH 246
            +   L++       + +++ +   L        + +  + N S  K  +     E  + 
Sbjct: 88  NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 247 YNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLK 306
            N+   +                            + +      +        +N   L 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 307 TLLLANNSLFGSFRMPIHCLQKLATL-------DVSNNFFLGHIPVEIGTYLPGLMHLNL 359
           T+   NN L     +P                 ++  +     +   I + L  L     
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 360 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFS 419
             NA +  I S       L+ L++S N+L   +P         LE L  S N L   +  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPE 321

Query: 420 EKFNLTNLKRLQLDGNKF--IGEIPESLSKCYL 450
                 NLK+L ++ N      +IPES+    +
Sbjct: 322 L---PQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 61/336 (18%), Positives = 106/336 (31%), Gaps = 32/336 (9%)

Query: 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNN 484
                L+L+    +  +PE       L  L  S N L+ ++P    SL   + +++ NNN
Sbjct: 38  RQAHELELNNLG-LSSLPELPPH---LESLVASCNSLT-ELPELPQSL---KSLLVDNNN 89

Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYP 544
           L          L  L      +N+    LP   +   ++ + +  N ++   +       
Sbjct: 90  L-----KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 545 YLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL 604
                  +           +  LP L+ I   NN ++    + L     V   ++     
Sbjct: 145 I------AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP 198

Query: 605 SGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYY 664
                P L          + +  T         +    +       E  Q  T       
Sbjct: 199 ELQNLPFLTTI----YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 665 RGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLD 724
               L+ +       N  + EI +       +  LN+S+N L   +P     L   E L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLI 310

Query: 725 LSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760
            S+N L  ++P     L  L    V YN L  + PD
Sbjct: 311 ASFNHL-AEVPELPQNLKQL---HVEYNPLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 56/331 (16%), Positives = 90/331 (27%), Gaps = 31/331 (9%)

Query: 400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 459
                 L L+N  L     S      +L+ L    N  + E+PE       L  L + +N
Sbjct: 37  DRQAHELELNNLGLS----SLPELPPHLESLVASCNS-LTELPELPQS---LKSLLVDNN 88

Query: 460 HLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSL 519
           +              L+ +      LE    +        ++ + S   I     + L  
Sbjct: 89  N--------------LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK 134

Query: 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNY 579
                  L            +     L  L   Y   +         L   S +   N  
Sbjct: 135 LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 580 IEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSY 639
            E      L  L  +   +     L    P             D +       +   +S 
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSE 253

Query: 640 FPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL 699
              +G              +        +  S+  +++S NKL  E+P     L R   L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---L 309

Query: 700 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 730
             S N+L   +P    NLK    L + YN L
Sbjct: 310 IASFNHLA-EVPELPQNLK---QLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 6e-06
 Identities = 51/336 (15%), Positives = 101/336 (30%), Gaps = 22/336 (6%)

Query: 172 LPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF-QIPISLEPLFNLS 230
           L  CL        L+++   L+  +   P      +E L+ S N   ++P   + L +L 
Sbjct: 32  LRDCLDR--QAHELELNNLGLSS-LPELP----PHLESLVASCNSLTELPELPQSLKSLL 84

Query: 231 KLKTFNGEIYAETES-----HYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADL 285
                   +             N+   K      S                     + + 
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 286 SHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPV 345
                +        +N   L  +   NNSL     +P+     +A  ++           
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 346 EIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEI 405
            + T       L    +        +  D  +    ++  +     + E +  G   L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 406 LALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKI 465
                N     I S      +L+ L +  NK + E+P    +   L  L  S NHL+ ++
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPR---LERLIASFNHLA-EV 319

Query: 466 PRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKV 501
           P    +   L+ + +  N L    P+    ++ L++
Sbjct: 320 PELPQN---LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 114 YIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLP 173
               N   + +        SL+ LNV++N+L    P     L     L    N L   +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVP 320

Query: 174 LCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSN 214
                  +L+ L V YN L E     P     S+E+L +++
Sbjct: 321 ---ELPQNLKQLHVEYNPLRE-FPDIP----ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 55/331 (16%), Positives = 100/331 (30%), Gaps = 22/331 (6%)

Query: 105 CELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYID 164
           C      EL + +  L  SL     +   L+ L  + N LT   P     L  L     +
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPIS-- 222
              L    PL      S   L+        +      +   S+++L       +   +  
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 223 -----LEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ 277
                L  L NL  L     +  +  +     L+ +  +   ++           FL   
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 278 HDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNN 337
           +  NN   +  +L          +N       L  +  F      I         ++   
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 338 FFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMA 397
               +    +    P L  LN+S N     +P+       L+ L  S+N L   +PE   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQ 324

Query: 398 MGCFSLEILALSNNTLQGHIFSEKFNLTNLK 428
               +L+ L +  N L+        ++ +L+
Sbjct: 325 ----NLKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 14/99 (14%)

Query: 312 NNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSS 371
            N+     R        L  L+VSNN       +E+    P L  L  S N     +P  
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKL-----IELPALPPRLERLIASFNHLA-EVPEL 322

Query: 372 FADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
               + LK L + YN L    P+       S+E L +++
Sbjct: 323 ---PQNLKQLHVEYNPLRE-FPDIPE----SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 48/328 (14%), Positives = 89/328 (27%), Gaps = 29/328 (8%)

Query: 255 QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNS 314
           Q   + L+  G   + P+   H        L  L  S      LPE    LK+LL+ NN+
Sbjct: 39  QAHELELNNLGLS-SLPELPPH--------LESLVASCNSLTELPELPQSLKSLLVDNNN 89

Query: 315 LFGSFRM----PIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPS 370
           L     +        +       +        + +            +L  +    +  +
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 371 SFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRL 430
           +  +             +         +    L + ++           E  NL  L  +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 431 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMP--------N 482
             D N          S   L        +            +       +          
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHY 542
           N     I +       L+ L++SNN +   LP+      +E++  S N     L  +   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL-IELPA--LPPRLERLIASFN----HLAEVPEL 322

Query: 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQL 570
              L  L + YN L    P+  + +  L
Sbjct: 323 PQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 53/322 (16%), Positives = 98/322 (30%), Gaps = 23/322 (7%)

Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSL---------FGSFRMPIHCLQKLATLDV 334
           +L++L LS      LPE    L++L+ + NSL           S  +  + L+ L+ L  
Sbjct: 44  ELNNLGLSS-----LPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 98

Query: 335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE 394
              +                       +  N S+         L+ +    NQL      
Sbjct: 99  LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL 158

Query: 395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGL 454
           +      ++     S   L     S +  +     L+            ++     L   
Sbjct: 159 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 218

Query: 455 YLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLP 514
                     +      L  L ++      L+          +    L   N S      
Sbjct: 219 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 278

Query: 515 SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL 574
            C    S+E++++S N    +L  +    P L  L  S+N L   +P     L QL    
Sbjct: 279 LCDLPPSLEELNVSNN----KLIELPALPPRLERLIASFNHL-AEVPELPQNLKQLH--- 330

Query: 575 LANNYIEGEIPVQLCQLKEVRL 596
           +  N +  E P     ++++R+
Sbjct: 331 VEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 97  NTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELV 156
           +  +         L+EL + +N L +      A    L+ L  + N L    P       
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIE----LPALPPRLERLIASFNHLA-EVPELPQN-- 325

Query: 157 LLRELYIDNNDLRGSLPLCLANLTSLRV 184
            L++L+++ N LR   P    ++  LR+
Sbjct: 326 -LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 7e-07
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYN 728
              SG+  + +    +    +     +  L + +      +       L ++ +L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 785
            L    P        L+   +++N L   +  +  Q  + +E    GNP  C   L 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 28/143 (19%), Positives = 39/143 (27%), Gaps = 3/143 (2%)

Query: 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNT 412
           G   L  +R+             + L  L I   Q    +  R   G   L  L +  + 
Sbjct: 9   GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 413 LQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS-GKIPRWLGS 471
           L+            L RL L  N     +     +   L  L LS N L      RWL  
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 472 LLALQDIIMPNNNLEGPIPNEFC 494
                   +P   L+        
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLA 149

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 2/144 (1%)

Query: 303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRN 362
                L    +         +   + L  L + N   L H+ +     L  L +L + ++
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 363 AFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF 422
                 P +F     L  L++S+N L  ++  +   G    E++   N            
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 423 NLTNLKRLQLDGNKFIGEIPESLS 446
                    +   K        L+
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLA 149

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 85  RILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQL 144
           R+L L++  L   T+L   L +L+ +  L +  N LR      LA +  L+VL    +  
Sbjct: 1   RVLHLAHKDL---TVLC-HLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQA--SDN 53

Query: 145 TGNFPPGFCELVLLRELYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQLT--ENISSSPL 201
                 G   L  L+EL + NN L+  +    L +   L +L++  N L   E I     
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 202 MHLTSIEELI 211
             L S+  ++
Sbjct: 114 EMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 135 QVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE 194
           +VL++A   LT        +L+L+  L + +N LR         L +LR L+V       
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNA 54

Query: 195 NISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
             +   + +L  ++EL+L NN  Q   +++PL +  +L   N
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 96

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGS 559
           +VL L++  +   L     L  +  + LS N++     ++         +  + +    +
Sbjct: 1   RVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCL--EVLQASDNALEN 57

Query: 560 IPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606
           +    +       +L  N   +      L     + L++L  N+L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 111 QELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRG 170
           + L++   DL  ++L  L  +  +  L+++ N+L    P     L  L  L   +N L  
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 171 SLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
              +   NL  L+ L +  N+L ++ +  PL+    +  L L  N  
Sbjct: 58  VDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH 541
           + +L   +     QL  +  LDLS+N +    P+  +L  +E +  S N +E      + 
Sbjct: 7   HKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VA 62

Query: 542 YYPYLVTLDLSYNRL-HGSIPNWIDKLPQLSYILLANNYIEGE 583
             P L  L L  NRL   +    +   P+L  + L  N +  E
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 8/120 (6%)

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGH 416
           L+L+      ++      + ++  LD+S+N+L    P   A+ C  +       +     
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALE 56

Query: 417 IFSEKFNLTNLKRLQLDGNKFIG-EIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLAL 475
                 NL  L+ L L  N+       + L  C  L  L L  N L          L  +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 405 ILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE--SLSKCYLLGGLYLSDNHLS 462
           +L L++  L   +      L  +  L L  N+     P   +L    +L     +  ++ 
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 463 GKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSI 509
           G         L L +    N   +            L +L+L  NS+
Sbjct: 60  GVANLPRLQELLLCN----NRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 306 KTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFN 365
           + L LA+  L  +    +  L  +  LD+S+N      P      L  L  L + + + N
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDN 53

Query: 366 GSI-PSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNL 424
                   A++  L+ L +  N+L  +   +  + C  L +L L  N+L      ++   
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 425 TNLKRLQ 431
             L  + 
Sbjct: 114 EMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 10/127 (7%)

Query: 428 KRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEG 487
           + L L        +   L +  L+  L LS N L    P  L +L  L+ +   +N LE 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 488 PIPNEFCQLDCLKVLDLSNNSI--FGTLPSCLSLGSIEQVHLSKNKI---EGQLESIIHY 542
                      L+ L L NN +     +   +S   +  ++L  N +   EG  E +   
Sbjct: 58  VDGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 543 YPYLVTL 549
            P + ++
Sbjct: 116 LPSVSSI 122

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 31/234 (13%), Positives = 61/234 (26%), Gaps = 23/234 (9%)

Query: 177 ANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
             L +   +    + +T+ ++ +    L  I  L            ++ L NL  L+  +
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72

Query: 237 GEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPN 296
            +I         +   + +L+   L                                   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 297 WLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMH 356
            L  +   +                 I  L  L  L   +        +     L  L  
Sbjct: 133 VLYLDLNQI---------------TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
           L    N  +   P   A +  L  + +  NQ++   P        +L I+ L+N
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 25/225 (11%), Positives = 73/225 (32%), Gaps = 23/225 (10%)

Query: 502 LDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP 561
           +    +++  T+     L  I  +      +   +E +  Y   L+ L+L  N++     
Sbjct: 24  IAAGKSNVTDTVTQA-DLDGITTLSAFGTGVT-TIEGV-QYLNNLIGLELKDNQIT--DL 78

Query: 562 NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGY 621
             +  L +++ + L+ N ++    +   Q  +   +  +       +        L    
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138

Query: 622 YDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNK 681
                 +                  +   + +      +S       L+ ++ +    NK
Sbjct: 139 NQITNISPLA--------------GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 682 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS 726
           ++   P  +  L  +  ++L +N ++   P   +N   +  + L+
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 147 NFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTS 206
           +       L  L  L  D+N +    PL  A+L +L  + +  NQ++     SPL + ++
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQIS---DVSPLANTSN 218

Query: 207 IEELILSN 214
           +  + L+N
Sbjct: 219 LFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 162 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPI 221
           Y+   + + S    LANL+ L  L    N+++     SPL  L ++ E+ L NN      
Sbjct: 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQIS--- 208

Query: 222 SLEPLFNLSKLKTFN 236
            + PL N S L    
Sbjct: 209 DVSPLANTSNLFIVT 223

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 34/230 (14%), Positives = 68/230 (29%), Gaps = 5/230 (2%)

Query: 159 RELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ 218
           R      + +   +P  L    +   L     +L   I          +E++ +S N   
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVL 66

Query: 219 IPISLEPLFNLSKLKTFNGEIYA-ETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ 277
             I  +   NL KL     E        +  +      L  + +S  G          H 
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 278 HDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNN 337
                 D+                 +    +L  N +             +L  L++S+N
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 338 FFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ 387
             L  +P ++     G + L++SR   +        ++K L++      +
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 26/237 (10%), Positives = 57/237 (24%), Gaps = 7/237 (2%)

Query: 500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGS 559
           +V     + +   +PS L   +  ++     K+    +     +  L  +++S N +   
Sbjct: 11  RVFLCQESKV-TEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 560 IPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSE 619
           I   +       + +                     L  L  +N    I        +  
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN--TGIKHLPDVHKIHS 126

Query: 620 GYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSC 679
                +    +              S       +        +                 
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 680 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP 736
           N L           +    L++S   +         NLK++ +    YNL   K+P 
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST-YNL--KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 26/216 (12%), Positives = 46/216 (21%), Gaps = 5/216 (2%)

Query: 544 PYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNN 603
              + L     +L             L  I ++ N +   I   +               
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 604 LSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYY 663
            +           L    Y  ++ T                  +  +         +   
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ--KVLLDIQDNINIHTIERN 146

Query: 664 YRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESL 723
               +      + L+ N +                    +NNL       F        L
Sbjct: 147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206

Query: 724 DLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759
           D+S   +H      L  L  L        NL  K+P
Sbjct: 207 DISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 730
           S        +K+T EIP+ +        L      L       FS    +E +++S N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 731 HGKIPPQ 737
              I   
Sbjct: 66  LEVIEAD 72

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 41/316 (12%), Positives = 85/316 (26%), Gaps = 28/316 (8%)

Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENIS---SSPLMHLTSIEELILSN 214
           L+   I   D + S+   L    S++ + +S N +    +   S  +     +E    S+
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 215 NHFQIPISLEPLFN--LSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPK 272
                     P     L +      +++    S         +     LS +        
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 273 FLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATL 332
                     A ++                     +   N    GS +      Q    L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 333 DVSNNFFLGHIPVEIGTYLPGL-----------MHLNLSRNAFNGSIPSSFADMKMLKSL 381
                   G  P  I   L              +  N   +  + ++  +      L+ L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 382 DISYNQLTGAIPERMAMGCF-----SLEILALSNNTLQGHIFSE-----KFNLTNLKRLQ 431
            ++   L+      +           L+ L L  N ++              + +L  L+
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 432 LDGNKFIGEIPESLSK 447
           L+GN+F  E  + + +
Sbjct: 309 LNGNRF-SEEDDVVDE 323

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 35/318 (11%), Positives = 78/318 (24%), Gaps = 17/318 (5%)

Query: 83  SLRILSLSYSRLNKNTI--LDQGLCELVHLQELYIRDNDLRD----SLLWCLANMTSLQV 136
           S+   SL    +       +   L E   ++E+ +  N +       L   +A+   L++
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 137 LNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENI 196
              +              L LL +  +    L        A   + +   + +      +
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 197 SSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQL 256
               L +     +           +++      +             E+       K   
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 257 TSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLF 316
           +   L          +    +H L         L           +     L +A  S  
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 317 GSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFAD-- 374
               + ++         +S       +         GL  L L  N        +     
Sbjct: 244 NLRELGLNDCL------LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297

Query: 375 ---MKMLKSLDISYNQLT 389
              M  L  L+++ N+ +
Sbjct: 298 DEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 36/334 (10%), Positives = 87/334 (26%), Gaps = 45/334 (13%)

Query: 421 KFNLTNLKRLQLD--GNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDI 478
           +F++   K L+LD    +    +   L +   +  + LS N +  +  RWL   +A    
Sbjct: 2   RFSIEG-KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA---- 56

Query: 479 IMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT-----------LPSCLSLGSIEQVHL 527
                               L++ + S+                 L + L    +  V L
Sbjct: 57  ----------------SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 100

Query: 528 SKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQ 587
           S N      +  +  +    T        +  +          +   LA N      P  
Sbjct: 101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 160

Query: 588 LCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPM 647
              +     ++                    +   + + P            +      +
Sbjct: 161 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 220

Query: 648 GKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIG------YLTRIRALNL 701
             ++       + +     +   ++  + L+   L+      +           ++ L L
Sbjct: 221 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 280

Query: 702 SHNNLTGTIPTT-----FSNLKQIESLDLSYNLL 730
            +N +      T        +  +  L+L+ N  
Sbjct: 281 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 546 LVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
            +  +L    +  ++    ++L  +  I+  N+ I+    +Q   L  V  + L+ N L+
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLT 81

Query: 606 GHIP---------PCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFT 656
              P           L    + +             S         NG     +    + 
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141

Query: 657 TKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSN 716
             N           +        +    +I   +  LT+++ L LS N+++       + 
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LRALAG 198

Query: 717 LKQIESLDLS 726
           LK ++ L+L 
Sbjct: 199 LKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 37/207 (17%), Positives = 76/207 (36%), Gaps = 20/207 (9%)

Query: 178 NLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNG 237
                   ++    +T+ ++ +    L SI+++I +N+  +    ++ L N++KL     
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL--- 75

Query: 238 EIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNW 297
                   + N LT    L ++   G+                +   L  L+L     + 
Sbjct: 76  --------NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLK-DLKKLKSLSLEHNGISD 126

Query: 298 LPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHL 357
           +       +   L   +   +    +  L KL TL + +N     +P+     L  L +L
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNL 183

Query: 358 NLSRNAFNGSIPSSFADMKMLKSLDIS 384
            LS+N    S   + A +K L  L++ 
Sbjct: 184 YLSKNHI--SDLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 30/209 (14%), Positives = 62/209 (29%), Gaps = 33/209 (15%)

Query: 343 IPVEIGTYLP-----GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMA 397
           +P  I            +  NL + +   ++  +  ++  +  +  + + +      +  
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQY- 66

Query: 398 MGCFSLEILALSNNTLQGHIFSEKFNLTNLKRL------------------QLDGNKFIG 439
               ++  L L+ N L                L                   L       
Sbjct: 67  --LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 440 EIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCL 499
                L     L  LYL +N ++         L  L  + + +N +   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLS 528
           + L LS N I   L +   L +++ + L 
Sbjct: 181 QNLYLSKNHI-SDLRALAGLKNLDVLELF 208

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 499 LKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRL-- 556
            + LDL       + P  ++      ++   +     L  I    P L++L+LS NRL  
Sbjct: 24  QQALDLKG---LRSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYR 79

Query: 557 HGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609
              + + + K P L  + L+ N ++ E  +   +  ++  + L  N+LS    
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 13/146 (8%)

Query: 438 IGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLD 497
           + ++   +SK Y      L    L  +    L +      +   ++     +      + 
Sbjct: 9   VEQLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAAT-LRIIEENIP 65

Query: 498 CLKVLDLSNNSIFGTLPSCLSLG---SIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN 554
            L  L+LSNN ++        +    +++ ++LS N+++ + E        L  L L  N
Sbjct: 66  ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125

Query: 555 RLHGSIPNW-------IDKLPQLSYI 573
            L  +  +         ++ P+L  +
Sbjct: 126 SLSDTFRDQSTYISAIRERFPKLLRL 151

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 472 LLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNK 531
            +  +++ +    +   I N    LD    +D S+N I   L     L  ++ + ++ N+
Sbjct: 17  AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNR 74

Query: 532 IEGQLESIIHYYPYLVTLDLSYNRLHG-SIPNWIDKLPQLSYILLAN---NYIEGEIPVQ 587
           I    E +    P L  L L+ N L      + +  L  L+Y+ +        +      
Sbjct: 75  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 134

Query: 588 LCQLKEVRLIDLS 600
           + ++ +VR++D  
Sbjct: 135 IYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 8/140 (5%)

Query: 370 SSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKR 429
           + + +    + LD+   ++   I   +       + +  S+N +          L  LK 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 430 LQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG----KIPRWLGSLLALQDIIMPNNNL 485
           L ++ N+              L  L L++N L           L SL  L  +  P  N 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 486 EGPIPNEFCQLDCLKVLDLS 505
           +        ++  ++VLD  
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 681 KLTGEIPTQIGY---LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731
           KLT E+  Q        R R L+L    +   I    + L Q +++D S N + 
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR 54

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 7/150 (4%)

Query: 290 LSGEFPNWLPE--NNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEI 347
           L+ E      +  N    + L L    +          L +   +D S+N       ++ 
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE---IRKLDG 58

Query: 348 GTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILA 407
              L  L  L ++ N            +  L  L ++ N L             SL  L 
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 408 LSNNTLQGHIFSEKFNLTNLKRLQ-LDGNK 436
           +  N +        + +  + +++ LD  K
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 150 PGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHL 204
             +   V  REL +    +   +    A L     +D S N++ +      L  L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRL 65

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 3/152 (1%)

Query: 367 SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTN 426
            IP           L ++ N+L     + +      L  L L  N L G   +     ++
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 427 LKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE 486
           ++ LQL  NK      +     + L  L L DN +S  +P     L +L  + + +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 487 GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS 518
               +     + L+   L+  +     PS + 
Sbjct: 140 C-NCHLAWFAEWLRKKSLNGGAARCGAPSKVR 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	874
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.47
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.42

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.5e-31  Score=281.65  Aligned_cols=256  Identities=30%  Similarity=0.562  Sum_probs=207.7

Q ss_pred             CCeeecCCCcccc--cCCccccCCCCCCEEECcC-CcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEE
Q 042603          475 LQDIIMPNNNLEG--PIPNEFCQLDCLKVLDLSN-NSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLD  550 (874)
Q Consensus       475 L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  550 (874)
                      ++.|++++|.+.+  .+|..++++++|++|+|++ |++.|.+|..+. +++|++|++++|++.+..+..+..++.|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            3334444444433  2445555555555555553 455555554333 56666666666667777777788888899999


Q ss_pred             ccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCC-CEEEccCCcCCCCCCchhhccccccccccCCCCCc
Q 042603          551 LSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEV-RLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTW  629 (874)
Q Consensus       551 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~  629 (874)
                      +++|.+.+.+|..+++++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+...              
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--------------  197 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--------------  197 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--------------
T ss_pred             cccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc--------------
Confidence            99999988889999999999999999999998999888888776 889999999998877765543              


Q ss_pred             cccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccc
Q 042603          630 DHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT  709 (874)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  709 (874)
                                                               ....++++++...+.+|..++.+++++.+++++|.+++.
T Consensus       198 -----------------------------------------~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         198 -----------------------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             -----------------------------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             -----------------------------------------ccccccccccccccccccccccccccccccccccccccc
Confidence                                                     334689999999999999999999999999999999987


Q ss_pred             hhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCCCCCC
Q 042603          710 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSC  788 (874)
Q Consensus       710 ~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l~~~c  788 (874)
                      +| .++.+++|+.|||++|+++|.+|+.++++++|++|++++|+|+|.+|+ ++++++++.+++.||+.+||.|++ .|
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC-CC
Confidence            66 688999999999999999999999999999999999999999999997 588999999999999999999986 66

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.3e-29  Score=264.87  Aligned_cols=251  Identities=30%  Similarity=0.470  Sum_probs=196.9

Q ss_pred             CCCeEEccCCcCCC--CCchhhhccccCCeeecCC-CcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEE
Q 042603          450 LLGGLYLSDNHLSG--KIPRWLGSLLALQDIIMPN-NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQV  525 (874)
Q Consensus       450 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L  525 (874)
                      .++.|++++|.+.+  .+|..++++++|++|++++ |++.|.+|..++++++|++|+|++|++.+..+..+. +..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            35556666665555  3556666666666666665 566666666666677777777777776665555443 6667777


Q ss_pred             EeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCC-cEEEccCccCcccCCccccCCCCCCEEEccCCcC
Q 042603          526 HLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQL-SYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL  604 (874)
Q Consensus       526 ~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l  604 (874)
                      ++++|.+.+..|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            777777777777788888889999999999988888888887776 788899999998888888877555 689999888


Q ss_pred             CCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccc
Q 042603          605 SGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG  684 (874)
Q Consensus       605 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  684 (874)
                      .+.+|..+..                                                      +++++.+++++|.+++
T Consensus       210 ~~~~~~~~~~------------------------------------------------------~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         210 EGDASVLFGS------------------------------------------------------DKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             EECCGGGCCT------------------------------------------------------TSCCSEEECCSSEECC
T ss_pred             cccccccccc------------------------------------------------------cccccccccccccccc
Confidence            8777765443                                                      2478889999999987


Q ss_pred             cCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCC-Cccc
Q 042603          685 EIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNN-LSGK  757 (874)
Q Consensus       685 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~-l~~~  757 (874)
                      .+| .++.+++|++|+|++|+++|.+|+.|+++++|++|||++|+|+|.+|+ ++++++|+.+++++|+ ++|.
T Consensus       236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            655 688899999999999999999999999999999999999999999985 5888999999999997 6764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.5e-26  Score=249.64  Aligned_cols=341  Identities=21%  Similarity=0.254  Sum_probs=200.6

Q ss_pred             CCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEE
Q 042603          302 NTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSL  381 (874)
Q Consensus       302 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  381 (874)
                      +.+|++|+++++.+...  ..+..+++|++|++++|+++ .++.  +..+++|++|++++|.+.+..  .+.++++|+.|
T Consensus        43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--ccccccccccc
Confidence            34566666666655432  23445566666666666665 3432  233556666666666665332  25566666666


Q ss_pred             EcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcC
Q 042603          382 DISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL  461 (874)
Q Consensus       382 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  461 (874)
                      +++++.+++..+ ..  ....+.......|.+.....................                           
T Consensus       116 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------------------------  165 (384)
T d2omza2         116 TLFNNQITDIDP-LK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV---------------------------  165 (384)
T ss_dssp             ECCSSCCCCCGG-GT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC---------------------------
T ss_pred             cccccccccccc-cc--cccccccccccccccccccccccccccccccccccc---------------------------
Confidence            666666553222 11  233444555544444322221111111111111000                           


Q ss_pred             CCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhh
Q 042603          462 SGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH  541 (874)
Q Consensus       462 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  541 (874)
                        .....+...+.........|...  ....+..+++++.+++++|.+++..| ....++|++|++++|.++..  ..+.
T Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~--~~l~  238 (384)
T d2omza2         166 --TDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLA  238 (384)
T ss_dssp             --CCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred             --chhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCc--chhh
Confidence              11112222333333333333322  23344555666666666666654332 23345667777777766654  2466


Q ss_pred             cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccccccc
Q 042603          542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGY  621 (874)
Q Consensus       542 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~  621 (874)
                      .+++|+.+++++|++++..+  +..+++|++|++++|++.+..  .+..++.++.++++.|.+++ + ..+.        
T Consensus       239 ~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~-~~~~--------  304 (384)
T d2omza2         239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-I-SPIS--------  304 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-C-GGGG--------
T ss_pred             cccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccc-c-cccc--------
Confidence            77788888888888775433  667788888888888877543  36677888888888888763 1 1111        


Q ss_pred             ccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEec
Q 042603          622 YDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL  701 (874)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  701 (874)
                                                                    .+++++.|++++|++++..  .+..+++|++|++
T Consensus       305 ----------------------------------------------~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L  336 (384)
T d2omza2         305 ----------------------------------------------NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFF  336 (384)
T ss_dssp             ----------------------------------------------GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEEC
T ss_pred             ----------------------------------------------hhcccCeEECCCCCCCCCc--ccccCCCCCEEEC
Confidence                                                          1347788888888888653  3788889999999


Q ss_pred             CCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCC
Q 042603          702 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYN  752 (874)
Q Consensus       702 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N  752 (874)
                      ++|++++. | .++++++|++||+++|++++.+|  +.++++|+.|++++|
T Consensus       337 ~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         337 ANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99998853 3 58889999999999999987655  788899999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=6e-26  Score=246.65  Aligned_cols=340  Identities=24%  Similarity=0.279  Sum_probs=236.5

Q ss_pred             CCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEE
Q 042603          352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQ  431 (874)
Q Consensus       352 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  431 (874)
                      .+|++|+++++.|+..  +.+..+++|++|++++|+++ .++.  +.++++|++|++++|.+.+..  .+..+++|+.++
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--cccccccccccc
Confidence            3555556655555532  24555556666666666655 3332  234566666666666665432  245667777777


Q ss_pred             ccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcc
Q 042603          432 LDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFG  511 (874)
Q Consensus       432 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  511 (874)
                      ++++.+++..+  ......+.......|.+....+................     .....+.............|... 
T Consensus       117 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-  188 (384)
T d2omza2         117 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKVS-  188 (384)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCCC-
T ss_pred             ccccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccccc-
Confidence            77776654322  23345566666666665533332222221122111111     12234555566666777766653 


Q ss_pred             cCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCC
Q 042603          512 TLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQL  591 (874)
Q Consensus       512 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  591 (874)
                      .......+++++.+++++|.+++..+  +..+++|+.|++++|++++ + ..+..+++|+.+++++|.+++..+  +..+
T Consensus       189 ~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~  262 (384)
T d2omza2         189 DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGL  262 (384)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--cccc
Confidence            23334457899999999999998865  4667899999999999985 3 468899999999999999986543  7889


Q ss_pred             CCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccC
Q 042603          592 KEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTS  671 (874)
Q Consensus       592 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (874)
                      ++|+.+++++|.+++..|  +..                                                      ++.
T Consensus       263 ~~L~~L~l~~~~l~~~~~--~~~------------------------------------------------------~~~  286 (384)
T d2omza2         263 TKLTELKLGANQISNISP--LAG------------------------------------------------------LTA  286 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTT------------------------------------------------------CTT
T ss_pred             ccCCEeeccCcccCCCCc--ccc------------------------------------------------------ccc
Confidence            999999999999874221  111                                                      347


Q ss_pred             cceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccC
Q 042603          672 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAY  751 (874)
Q Consensus       672 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~  751 (874)
                      ++.++++.|.+++  +..+..+++++.|++++|++++..|  +..+++|++|++++|+|++ +| .+.++++|++|++++
T Consensus       287 l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~  360 (384)
T d2omza2         287 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGH  360 (384)
T ss_dssp             CSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCS
T ss_pred             ccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCC
Confidence            7889999999985  3458889999999999999998654  8899999999999999986 33 699999999999999


Q ss_pred             CCCcccCCCccccCCCCCcccccCC
Q 042603          752 NNLSGKIPDRVAQFSTFEEDSYEGN  776 (874)
Q Consensus       752 N~l~~~~p~~~~~~~~l~~~~~~gN  776 (874)
                      |++++.+|  +..++.++.+++++|
T Consensus       361 N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         361 NQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CcCCCChh--hccCCCCCEeeCCCC
Confidence            99998776  678899999999887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7.6e-24  Score=221.41  Aligned_cols=244  Identities=22%  Similarity=0.300  Sum_probs=154.4

Q ss_pred             CCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECc
Q 042603          426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLS  505 (874)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  505 (874)
                      ..++++-++++++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+....|..|.+++.|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4566666666666 4455543  568888888888876555678888888888888888887778888888888888888


Q ss_pred             CCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCC--CCchhhcCCCCCcEEEccCccCccc
Q 042603          506 NNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG--SIPNWIDKLPQLSYILLANNYIEGE  583 (874)
Q Consensus       506 ~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~  583 (874)
                      +|+++. +|... ...++.|++.+|.+.++.+..+.....+..++...|....  ..+..+..+++|+.+++++|.+.. 
T Consensus        88 ~n~l~~-l~~~~-~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-  164 (305)
T d1xkua_          88 KNQLKE-LPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-  164 (305)
T ss_dssp             SSCCSB-CCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CCccCc-Cccch-hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-
Confidence            888874 34332 3467888888888888877777777778888877775432  234455666666667666666652 


Q ss_pred             CCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccc
Q 042603          584 IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYY  663 (874)
Q Consensus       584 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (874)
                      +|..  .+++|+.|++++|..++..+..+..                                                 
T Consensus       165 l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~-------------------------------------------------  193 (305)
T d1xkua_         165 IPQG--LPPSLTELHLDGNKITKVDAASLKG-------------------------------------------------  193 (305)
T ss_dssp             CCSS--CCTTCSEEECTTSCCCEECTGGGTT-------------------------------------------------
T ss_pred             cCcc--cCCccCEEECCCCcCCCCChhHhhc-------------------------------------------------
Confidence            3322  2345555555555554433332222                                                 


Q ss_pred             cccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc
Q 042603          664 YRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  732 (874)
Q Consensus       664 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  732 (874)
                           ++.++.|++++|.+++..+..+.++++|++|+|++|+|+ .+|+.|.++++|++|+|++|+|+.
T Consensus       194 -----~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         194 -----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             -----CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             -----cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence                 124445555555555555555555555555555555555 334455555555555555555553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-24  Score=223.51  Aligned_cols=227  Identities=19%  Similarity=0.194  Sum_probs=169.7

Q ss_pred             EECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEcc-CccC
Q 042603          502 LDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA-NNYI  580 (874)
Q Consensus       502 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~~  580 (874)
                      ++.+++.++ .+|..+ .+++++|+|++|+|+++.+.+|.++++|++|++++|++....+..+..++.++.+... .+.+
T Consensus        16 v~c~~~~L~-~iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EECCSSCCS-SCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEcCCCCCC-ccCCCC-CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            444555544 334332 2456777777777777777777777788888888888777777777777777777654 5556


Q ss_pred             cccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCc
Q 042603          581 EGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNM  660 (874)
Q Consensus       581 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (874)
                      ....+..+.++++|+.|++++|.+....+..+..                                              
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----------------------------------------------  127 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG----------------------------------------------  127 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----------------------------------------------
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccch----------------------------------------------
Confidence            6666777788888888888888775322222111                                              


Q ss_pred             ccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhc
Q 042603          661 SYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV  740 (874)
Q Consensus       661 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~  740 (874)
                              .+.|+.+++++|.++++.+..|..+++|+.|++++|++++..|..|.++++|+.+++++|++++..|..|..
T Consensus       128 --------~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~  199 (284)
T d1ozna_         128 --------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD  199 (284)
T ss_dssp             --------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             --------hcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhh
Confidence                    246778888888888776777888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          741 LNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       741 l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      +++|+.|++++|.+.+.+|..+..+..++.+++.||||.|+|++
T Consensus       200 l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             hhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            88888888888888888887788888888888899999996653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.1e-23  Score=215.75  Aligned_cols=243  Identities=23%  Similarity=0.282  Sum_probs=159.7

Q ss_pred             cccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEE
Q 042603          328 KLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILA  407 (874)
Q Consensus       328 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  407 (874)
                      ..+.+|-+++.++ .+|..+.   +++++|++++|+|+...+.+|.++++|++|++++|.+. .++...+..++.|++|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            4566777777766 6776543   46777777777777555556777777777777777766 33333333455555555


Q ss_pred             cccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcc--
Q 042603          408 LSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL--  485 (874)
Q Consensus       408 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--  485 (874)
                      +++|+++.....   ..+                        .+..|++.+|.+.+..+..+........+....|..  
T Consensus        86 l~~n~l~~l~~~---~~~------------------------~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~  138 (305)
T d1xkua_          86 LSKNQLKELPEK---MPK------------------------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  138 (305)
T ss_dssp             CCSSCCSBCCSS---CCT------------------------TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             ccCCccCcCccc---hhh------------------------hhhhhhccccchhhhhhhhhhccccccccccccccccc
Confidence            555555432211   112                        344455555555444444444455555555555432  


Q ss_pred             cccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhc
Q 042603          486 EGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWID  565 (874)
Q Consensus       486 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  565 (874)
                      ....+..+..+++|+.+++++|++.. +|... +++|+.|++++|.+++..+..|..++.+++|++++|.+++..+.++.
T Consensus       139 ~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~  216 (305)
T d1xkua_         139 SGIENGAFQGMKKLSYIRIADTNITT-IPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  216 (305)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             cCCCccccccccccCccccccCCccc-cCccc-CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccc
Confidence            22344566777788888888887763 33322 46788888888888888788888888888888888888877778888


Q ss_pred             CCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCC
Q 042603          566 KLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS  605 (874)
Q Consensus       566 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (874)
                      ++++|++|+|++|+++ .+|.++..+++|+.|++++|+++
T Consensus       217 ~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         217 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            8888888888888887 45777888888888888888876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=215.74  Aligned_cols=205  Identities=22%  Similarity=0.235  Sum_probs=103.7

Q ss_pred             cCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEee-CcccCccchhhhhcCCCCcEEEc
Q 042603          474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLS-KNKIEGQLESIIHYYPYLVTLDL  551 (874)
Q Consensus       474 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L  551 (874)
                      ++++|++++|++++..+..|.++++|++|++++|++.+..+..+. ...++.+... .+.++.+.+..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            345555555555544444555555555555555555544433332 3444444332 33444444555555555555555


Q ss_pred             cCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccc
Q 042603          552 SYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDH  631 (874)
Q Consensus       552 s~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~  631 (874)
                      ++|.+....+..+...++|+.+++++|++++..+..|..+++|+.|++++|++++..|..+..                 
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~-----------------  175 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-----------------  175 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT-----------------
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc-----------------
Confidence            555555444445555555555555555555444445555555555555555554222222111                 


Q ss_pred             cCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchh
Q 042603          632 ASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP  711 (874)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  711 (874)
                                                           +++|+.+++++|++++..|..|..+++|++||+++|++++..|
T Consensus       176 -------------------------------------l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         176 -------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             -------------------------------------ccccchhhhhhccccccChhHhhhhhhcccccccccccccccc
Confidence                                                 2244455555555555555555555555555555555555555


Q ss_pred             hhccCCCCCCEEECCCCcCcc
Q 042603          712 TTFSNLKQIESLDLSYNLLHG  732 (874)
Q Consensus       712 ~~~~~l~~L~~LdLs~N~l~~  732 (874)
                      ..|+++++|++|++++|++.+
T Consensus       219 ~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         219 EALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             HHHTTCTTCCEEECCSSCEEC
T ss_pred             cccccccccCEEEecCCCCCC
Confidence            555555555555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3e-23  Score=211.50  Aligned_cols=206  Identities=23%  Similarity=0.275  Sum_probs=123.2

Q ss_pred             CCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEE
Q 042603          495 QLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL  574 (874)
Q Consensus       495 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  574 (874)
                      ....+.++|.+++.++. +|..+. +++++|+|++|+|+++.+..|.++++|++|+|++|+++. +| .++.+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC-cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            34455566777777663 443322 456666666666666666666666666666666666652 22 134455555555


Q ss_pred             ccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEE
Q 042603          575 LANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQ  654 (874)
Q Consensus       575 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (874)
                      +++|++++ .+..+..+++                                                             
T Consensus        84 Ls~N~l~~-~~~~~~~l~~-------------------------------------------------------------  101 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPA-------------------------------------------------------------  101 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTT-------------------------------------------------------------
T ss_pred             cccccccc-cccccccccc-------------------------------------------------------------
Confidence            55555542 2333444444                                                             


Q ss_pred             EEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccC
Q 042603          655 FTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI  734 (874)
Q Consensus       655 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~  734 (874)
                                       |+.|++++|.+.+..+..+..+.+++.|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus       102 -----------------L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_         102 -----------------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             -----------------CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             -----------------cccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence                             445555555555445555556666666666666666666666666666666666666666666


Q ss_pred             ChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          735 PPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       735 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      +..+..+++|+.|++++|+|+ .+|.++..+..++.+++.||||.|+|.+
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            666666666666666666666 4455455666777777888899997643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-21  Score=198.51  Aligned_cols=200  Identities=24%  Similarity=0.242  Sum_probs=142.2

Q ss_pred             ccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCC-CCCcccEEEeeCcccCccchhhhhcCCCCcEE
Q 042603          471 SLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTL  549 (874)
Q Consensus       471 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  549 (874)
                      ....+.+++.++++++. +|..+.  +++++|+|++|++++..+..+ .+++|++|++++|+|+.+.+  +..+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--cccccccccc
Confidence            45567778999999984 676553  579999999999997766655 48999999999999997653  5689999999


Q ss_pred             EccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCc
Q 042603          550 DLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTW  629 (874)
Q Consensus       550 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~  629 (874)
                      ++++|++++ .+..+.++++|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..               
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~---------------  146 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP---------------  146 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT---------------
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccc---------------
Confidence            999999984 5677899999999999999998777777777777777777777765221111111               


Q ss_pred             cccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccc
Q 042603          630 DHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT  709 (874)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  709 (874)
                                                             ++.++.+++++|++++..+..|+.+++|++|+|++|+|+ .
T Consensus       147 ---------------------------------------l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~  186 (266)
T d1p9ag_         147 ---------------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (266)
T ss_dssp             ---------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             ---------------------------------------cccchhcccccccccccCccccccccccceeecccCCCc-c
Confidence                                                   234555555555555555555555555555555555555 4


Q ss_pred             hhhhccCCCCCCEEECCCCcCc
Q 042603          710 IPTTFSNLKQIESLDLSYNLLH  731 (874)
Q Consensus       710 ~p~~~~~l~~L~~LdLs~N~l~  731 (874)
                      +|+.+..+++|+.|+|++|++.
T Consensus       187 lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         187 IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cChhHCCCCCCCEEEecCCCCC
Confidence            4545555555555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=1.7e-17  Score=176.89  Aligned_cols=95  Identities=31%  Similarity=0.312  Sum_probs=49.6

Q ss_pred             cccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEE
Q 042603          328 KLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILA  407 (874)
Q Consensus       328 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  407 (874)
                      ++++||++++.++ .+|..    .++|++|++++|+|+ .+|..   ..+|+.|++++|+++ .++..    .+.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~~----~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l----p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCCC----CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh----cccccccc
Confidence            4555666666655 45531    346666666666665 34433   235666666666655 33321    23455566


Q ss_pred             cccCcccccCCccccCCCCCCeEEccCCcCc
Q 042603          408 LSNNTLQGHIFSEKFNLTNLKRLQLDGNKFI  438 (874)
Q Consensus       408 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  438 (874)
                      +++|.+....  .+..+++|+.++++++.+.
T Consensus       105 L~~n~l~~lp--~~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         105 VSNNQLEKLP--ELQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCSSCCSSCC--CCTTCTTCCEEECCSSCCS
T ss_pred             cccccccccc--chhhhccceeecccccccc
Confidence            6655555322  1344555666666555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.7e-20  Score=206.77  Aligned_cols=382  Identities=18%  Similarity=0.110  Sum_probs=203.3

Q ss_pred             cccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCc----ccchhccCCCCcCEEEcccCcCCCCchhHHHh----c
Q 042603          328 KLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG----SIPSSFADMKMLKSLDISYNQLTGAIPERMAM----G  399 (874)
Q Consensus       328 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~----~  399 (874)
                      +|++||+++|++++..-..+...++++++|+|++|.++.    .++..+..+++|++||+++|.+++.....+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            456666666666532223333445666677777776652    22344566667777777776665221122222    1


Q ss_pred             CCCCCEEEcccCccccc----CCccccCCCCCCeEEccCCcCcccCCcccc-----ccCCCCeEEccCCcCCCCC----c
Q 042603          400 CFSLEILALSNNTLQGH----IFSEKFNLTNLKRLQLDGNKFIGEIPESLS-----KCYLLGGLYLSDNHLSGKI----P  466 (874)
Q Consensus       400 ~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~----~  466 (874)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.......+.     ...................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            23566677776666543    223345566677777777765432111111     1111222333322221100    0


Q ss_pred             hhhhccccCCeeecCCCcccccC----Cccc-cCCCCCCEEECcCCcCcccCC-----CCCCCCcccEEEeeCcccCcc-
Q 042603          467 RWLGSLLALQDIIMPNNNLEGPI----PNEF-CQLDCLKVLDLSNNSIFGTLP-----SCLSLGSIEQVHLSKNKIEGQ-  535 (874)
Q Consensus       467 ~~~~~l~~L~~L~l~~n~l~~~~----~~~~-~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~L~~L~l~~n~i~~~-  535 (874)
                      ..+.....++.+.++++......    ...+ ........+++..+.+.....     .......++.+++.+|++... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            12233455666666665543210    0011 112345566666665432110     011245677777777765432 


Q ss_pred             ----chhhhhcCCCCcEEEccCccCCCCC----chhhcCCCCCcEEEccCccCcccCCccc-----cCCCCCCEEEccCC
Q 042603          536 ----LESIIHYYPYLVTLDLSYNRLHGSI----PNWIDKLPQLSYILLANNYIEGEIPVQL-----CQLKEVRLIDLSHN  602 (874)
Q Consensus       536 ----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~Ls~N  602 (874)
                          ..........++.+++++|.+....    ..++...+.++.+++++|.+.+.....+     .....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence                2333445667778888877765322    2334556777788888777754222111     23456788888888


Q ss_pred             cCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcc
Q 042603          603 NLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKL  682 (874)
Q Consensus       603 ~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l  682 (874)
                      .++......+....                                                  ...++|++|||++|.+
T Consensus       323 ~l~~~~~~~l~~~~--------------------------------------------------~~~~~L~~L~Ls~N~i  352 (460)
T d1z7xw1         323 SFTAACCSHFSSVL--------------------------------------------------AQNRFLLELQISNNRL  352 (460)
T ss_dssp             CCBGGGHHHHHHHH--------------------------------------------------HHCSSCCEEECCSSBC
T ss_pred             chhhhhhhhccccc--------------------------------------------------ccccchhhhheeeecc
Confidence            77643222222211                                                  0124688888888888


Q ss_pred             ccc----CCcccc-ccccCCeEecCCcccccc----hhhhccCCCCCCEEECCCCcCcccCChhh----h-cCCCCCeEE
Q 042603          683 TGE----IPTQIG-YLTRIRALNLSHNNLTGT----IPTTFSNLKQIESLDLSYNLLHGKIPPQL----I-VLNTLAVFR  748 (874)
Q Consensus       683 ~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~~p~~l----~-~l~~L~~l~  748 (874)
                      ++.    +++.+. ..+.|++|+|++|+|+..    +++.+...++|++|||++|+|+......+    . +-..|+.|+
T Consensus       353 ~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~  432 (460)
T d1z7xw1         353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV  432 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             cCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEE
Confidence            643    233332 356688888888888753    45566677888888888888875433333    2 334688888


Q ss_pred             ccCCCCcccCC
Q 042603          749 VAYNNLSGKIP  759 (874)
Q Consensus       749 ls~N~l~~~~p  759 (874)
                      +++|++....+
T Consensus       433 l~~~~~~~~~~  443 (460)
T d1z7xw1         433 LYDIYWSEEME  443 (460)
T ss_dssp             CTTCCCCHHHH
T ss_pred             CCCCCCCHHHH
Confidence            88888765433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=4.3e-17  Score=173.58  Aligned_cols=303  Identities=27%  Similarity=0.353  Sum_probs=183.1

Q ss_pred             CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603          353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL  432 (874)
Q Consensus       353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  432 (874)
                      ++++|+++++.++ .+|+.   .++|++|++++|+++ .+|..    ..+|+.|++++|.++... .   -.+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l~-~---lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKALS-D---LPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCCC-S---CCTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchhh-h---hccccccccc
Confidence            7889999999998 56653   468999999999998 77753    468999999999887432 1   1246888999


Q ss_pred             cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 042603          433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT  512 (874)
Q Consensus       433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  512 (874)
                      ++|.+. .+|. +..+++|+.|++++|.+... +.   ....+..+.+..+...  ....+..++.++.+++++|.....
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccccccc
Confidence            988887 4443 56788888888888887643 22   2345566666665543  234566677788888888776532


Q ss_pred             CCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCC
Q 042603          513 LPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK  592 (874)
Q Consensus       513 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  592 (874)
                       +...  ...+.+....+.+....  .+..++.|+.+++++|.... .+.   ...++..+.+.++.+... +   ....
T Consensus       178 -~~~~--~~~~~l~~~~~~~~~~~--~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~---~~~~  244 (353)
T d1jl5a_         178 -PDLP--LSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-P---ELPQ  244 (353)
T ss_dssp             -CCCC--TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-C---CCCT
T ss_pred             -cccc--ccccccccccccccccc--cccccccccccccccccccc-ccc---cccccccccccccccccc-c---cccc
Confidence             2211  22344555554444332  24456677777777776552 232   234566666666665522 1   1234


Q ss_pred             CCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCc
Q 042603          593 EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSM  672 (874)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  672 (874)
                      .+...++..+.+.+. +.                                                         .....
T Consensus       245 ~l~~~~~~~~~~~~l-~~---------------------------------------------------------l~~~~  266 (353)
T d1jl5a_         245 SLTFLDVSENIFSGL-SE---------------------------------------------------------LPPNL  266 (353)
T ss_dssp             TCCEEECCSSCCSEE-SC---------------------------------------------------------CCTTC
T ss_pred             ccccccccccccccc-cc---------------------------------------------------------ccchh
Confidence            455555555544310 00                                                         01123


Q ss_pred             ceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCC
Q 042603          673 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYN  752 (874)
Q Consensus       673 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N  752 (874)
                      ...++..+.+.+.    ...+++|++|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|+.   +++|+.|++++|
T Consensus       267 ~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N  334 (353)
T d1jl5a_         267 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN  334 (353)
T ss_dssp             CEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             cccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCC
Confidence            3445555555422    223456777777777777 3443   3466777777777776 34532   346777777777


Q ss_pred             CCcccCCC
Q 042603          753 NLSGKIPD  760 (874)
Q Consensus       753 ~l~~~~p~  760 (874)
                      +|+. +|.
T Consensus       335 ~L~~-lp~  341 (353)
T d1jl5a_         335 PLRE-FPD  341 (353)
T ss_dssp             CCSS-CCC
T ss_pred             cCCC-CCc
Confidence            7663 343

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.1e-17  Score=165.37  Aligned_cols=188  Identities=17%  Similarity=0.263  Sum_probs=117.1

Q ss_pred             CCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEE
Q 042603          495 QLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL  574 (874)
Q Consensus       495 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  574 (874)
                      .+.+|+.|++.+|.++. ++....+++|++|++++|++++..+  +..+++++++++++|.++. + ..+.++++|+.+.
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred             HcCCcCEEECCCCCCCc-chhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccc
Confidence            34445555555555542 2333335555555555555554433  5666667777777666653 2 2356677777777


Q ss_pred             ccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEE
Q 042603          575 LANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQ  654 (874)
Q Consensus       575 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (874)
                      ++++...+.  ..+...+.++.+.++.+.+....+  +.                                         
T Consensus       114 l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~-----------------------------------------  148 (227)
T d1h6ua2         114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LA-----------------------------------------  148 (227)
T ss_dssp             CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GG-----------------------------------------
T ss_pred             ccccccccc--chhccccchhhhhchhhhhchhhh--hc-----------------------------------------
Confidence            777666533  234556667777776666542111  11                                         


Q ss_pred             EEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccC
Q 042603          655 FTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI  734 (874)
Q Consensus       655 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~  734 (874)
                                   ..++++.|++++|.+++..  .++++++|++|+|++|++++..  .++++++|++|+|++|++++..
T Consensus       149 -------------~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         149 -------------GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             -------------GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG
T ss_pred             -------------cccccccccccccccccch--hhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCc
Confidence                         1246777888888776432  3778888888888888888643  3778888888888888888643


Q ss_pred             ChhhhcCCCCCeEEccC
Q 042603          735 PPQLIVLNTLAVFRVAY  751 (874)
Q Consensus       735 p~~l~~l~~L~~l~ls~  751 (874)
                        .++++++|+.|++++
T Consensus       212 --~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         212 --PLANTSNLFIVTLTN  226 (227)
T ss_dssp             --GGTTCTTCCEEEEEE
T ss_pred             --ccccCCCCCEEEeeC
Confidence              377888888888863

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.7e-19  Score=198.52  Aligned_cols=400  Identities=17%  Similarity=0.096  Sum_probs=204.6

Q ss_pred             CCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCccccc----ccCCccCCCcccEEEccCCcCCccCChhhhc----C
Q 042603          279 DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGS----FRMPIHCLQKLATLDVSNNFFLGHIPVEIGT----Y  350 (874)
Q Consensus       279 ~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~----~  350 (874)
                      +|++||++++++++..-..+...+++++.|+|++|.++..    +...+..+++|++|||++|.++..-...+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            3455566666665422222234556677777777766532    2233456677777777777764211111111    1


Q ss_pred             CCCCcEEEccCCcCCcc----cchhccCCCCcCEEEcccCcCCCCchhHHHhc----CCCCCEEEcccCcccccCC----
Q 042603          351 LPGLMHLNLSRNAFNGS----IPSSFADMKMLKSLDISYNQLTGAIPERMAMG----CFSLEILALSNNTLQGHIF----  418 (874)
Q Consensus       351 l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~----  418 (874)
                      .++|++|++++|.+++.    ++..+..+++|++|++++|.+++.....+...    .............+.....    
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            24678888888877643    34556677778888888877763222222211    1122223332222211100    


Q ss_pred             ccccCCCCCCeEEccCCcCcccCC----cccc-ccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccc
Q 042603          419 SEKFNLTNLKRLQLDGNKFIGEIP----ESLS-KCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEF  493 (874)
Q Consensus       419 ~~~~~l~~L~~L~L~~n~l~~~~~----~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  493 (874)
                      ..+...+.++.++++.+.......    ..+. .......+++..+.+.......                    ....+
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~--------------------~~~~l  222 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD--------------------LCGIV  222 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH--------------------HHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhc--------------------ccccc
Confidence            111123444555554444321100    0000 1112233444433332110000                    00112


Q ss_pred             cCCCCCCEEECcCCcCccc-----CCCCC-CCCcccEEEeeCcccCccc----hhhhhcCCCCcEEEccCccCCCCCchh
Q 042603          494 CQLDCLKVLDLSNNSIFGT-----LPSCL-SLGSIEQVHLSKNKIEGQL----ESIIHYYPYLVTLDLSYNRLHGSIPNW  563 (874)
Q Consensus       494 ~~l~~L~~L~L~~n~l~~~-----~~~~~-~~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~  563 (874)
                      ...+.++.+++++|++...     .+... ....++.+++++|.+....    ...+...+.++.+++++|.+++.....
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            2334455555555544221     01111 1345666666666555332    223455677777777777765322222


Q ss_pred             h-----cCCCCCcEEEccCccCcccCCc----cccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCC
Q 042603          564 I-----DKLPQLSYILLANNYIEGEIPV----QLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASA  634 (874)
Q Consensus       564 ~-----~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~  634 (874)
                      +     .....|+.+++++|.+......    .+...++|+.|+|++|+++......+...-.                 
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~-----------------  365 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG-----------------  365 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT-----------------
T ss_pred             hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhh-----------------
Confidence            1     1245677888888777654322    2345567888888888876422222211000                 


Q ss_pred             CCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccccc----CCccccccccCCeEecCCcccccch
Q 042603          635 PALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE----IPTQIGYLTRIRALNLSHNNLTGTI  710 (874)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~  710 (874)
                                                      ...+.|+.|+|++|.|++.    +++.+...++|++|||++|+|+...
T Consensus       366 --------------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         366 --------------------------------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  413 (460)
T ss_dssp             --------------------------------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             --------------------------------cccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHH
Confidence                                            0023688899999988743    4455667789999999999998654


Q ss_pred             hhhc----c-CCCCCCEEECCCCcCcccCChhh----hcCCCCCeE
Q 042603          711 PTTF----S-NLKQIESLDLSYNLLHGKIPPQL----IVLNTLAVF  747 (874)
Q Consensus       711 p~~~----~-~l~~L~~LdLs~N~l~~~~p~~l----~~l~~L~~l  747 (874)
                      ...|    . +...|+.|++++|.+....+..+    ...++|+++
T Consensus       414 ~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            4443    2 34579999999999986655444    233455443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9.9e-17  Score=158.45  Aligned_cols=185  Identities=19%  Similarity=0.300  Sum_probs=82.2

Q ss_pred             CCCCEEecCCCCCCCCchhhhccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCC
Q 042603            5 TNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASL   84 (874)
Q Consensus         5 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L   84 (874)
                      .+|++|++++|++.  .+ +.+..+++|++|++++|.+.+..   .+..+++|+++++++|.++....     +..++.|
T Consensus        41 ~~L~~L~l~~~~i~--~l-~~l~~l~~L~~L~ls~n~i~~~~---~l~~l~~l~~l~~~~n~~~~i~~-----l~~l~~L  109 (227)
T d1h6ua2          41 DGITTLSAFGTGVT--TI-EGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKNVSA-----IAGLQSI  109 (227)
T ss_dssp             HTCCEEECTTSCCC--CC-TTGGGCTTCCEEECCSSCCCCCG---GGTTCCSCCEEECCSCCCSCCGG-----GTTCTTC
T ss_pred             CCcCEEECCCCCCC--cc-hhHhcCCCCcEeecCCceeeccc---ccccccccccccccccccccccc-----ccccccc
Confidence            34455555555441  12 33444555555555555444221   14444555555555444432222     3445555


Q ss_pred             CEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcc
Q 042603           85 RILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYID  164 (874)
Q Consensus        85 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  164 (874)
                      ++++++++.....    ..+...+.++.+.++++.+....  .+.++++|++|++++|.+...  ..+.++++|++|+++
T Consensus       110 ~~l~l~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         110 KTLDLTSTQITDV----TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKAD  181 (227)
T ss_dssp             CEEECTTSCCCCC----GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred             ccccccccccccc----chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhcccccceecccC
Confidence            5555554444331    22334444555555544443322  234444555555555544422  124445555555555


Q ss_pred             CCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEcc
Q 042603          165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILS  213 (874)
Q Consensus       165 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  213 (874)
                      +|++++. + .++++++|++|++++|++++ ++.  ++++++|++|+++
T Consensus       182 ~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~-i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         182 DNKISDI-S-PLASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             SSCCCCC-G-GGGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEE
T ss_pred             CCccCCC-h-hhcCCCCCCEEECcCCcCCC-Ccc--cccCCCCCEEEee
Confidence            5554432 1 24445555555555555443 321  4445555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=1.6e-17  Score=159.08  Aligned_cols=176  Identities=19%  Similarity=0.246  Sum_probs=119.7

Q ss_pred             cEEEccCccCCCCCchhhcCCCCCcEEEccCccCccc-CCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCC
Q 042603          547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGE-IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAV  625 (874)
Q Consensus       547 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~  625 (874)
                      +.++.++++++ .+|..+.  +++++|+|++|+|++. .+..|.++++|+.|++++|++++..+..+..           
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~-----------   76 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc-----------
Confidence            35666666666 4454332  4566677777776543 3445666777777777777776444433322           


Q ss_pred             CCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcc
Q 042603          626 APTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN  705 (874)
Q Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  705 (874)
                                                                 +++|++|+|++|++++..|..|.++++|++|+|++|+
T Consensus        77 -------------------------------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          77 -------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             -------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             -------------------------------------------ccccceeeeccccccccCHHHHhCCCcccccccCCcc
Confidence                                                       2367777888888887777888889999999999999


Q ss_pred             cccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603          706 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  783 (874)
Q Consensus       706 l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~  783 (874)
                      |+++.|+.|..+++|++|+|++|++.+..+.. .....++.+.+..|.+....|..   +..++..++..|.+.|.++
T Consensus       114 l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             ccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCC
Confidence            99888888999999999999999887654322 11223555667777777766653   4555667788888888543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.6e-17  Score=164.75  Aligned_cols=216  Identities=15%  Similarity=0.081  Sum_probs=134.6

Q ss_pred             CEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEcc
Q 042603          281 NNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLS  360 (874)
Q Consensus       281 ~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~  360 (874)
                      +.+++++..++ .+|..++   +++++|++++|++....+..|.++++|++|++++|.+...++...+..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56777777776 6777653   5788999999998887777888899999999999988766777777778888888876


Q ss_pred             C-CcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCC-CCCeEEccCCcCc
Q 042603          361 R-NAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLT-NLKRLQLDGNKFI  438 (874)
Q Consensus       361 ~-n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~  438 (874)
                      . |.+....+..|.++++|+++++++|.++...+......+..+..+..+++.+....+..+.+++ .++.+++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            4 5777777788888999999999998887332222222334444455555566555545544433 4555666666665


Q ss_pred             ccCCccccccCCCCeE-EccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCE
Q 042603          439 GEIPESLSKCYLLGGL-YLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKV  501 (874)
Q Consensus       439 ~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  501 (874)
                      ...+..+. ..++.++ ++++|+++...+..|.++++|++|++++|+++...+..|.++++|+.
T Consensus       167 ~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         167 EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            43333332 2232222 34444454333334455555555555555554333333444443333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.4e-16  Score=159.34  Aligned_cols=104  Identities=16%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             CEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCC-chhhcCCCCCcEEEccC-
Q 042603          500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI-PNWIDKLPQLSYILLAN-  577 (874)
Q Consensus       500 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~-  577 (874)
                      +.++.++..++ .+|..+ .+++++|++++|+|+.+.+.+|.++++|++|++++|.+...+ +.+|.+++.++++.+.. 
T Consensus        11 ~~i~c~~~~l~-~iP~~l-~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS-CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCC-CcCCCC-CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            34555555554 333322 135666666666666666666666666777777666665433 34566666666666543 


Q ss_pred             ccCcccCCccccCCCCCCEEEccCCcCC
Q 042603          578 NYIEGEIPVQLCQLKEVRLIDLSHNNLS  605 (874)
Q Consensus       578 n~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (874)
                      |.+....+..+.++++|+.+++++|.++
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccchhhhc
Confidence            4555555666666677777777766664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=4.3e-17  Score=156.08  Aligned_cols=115  Identities=23%  Similarity=0.345  Sum_probs=107.2

Q ss_pred             cCcceEEcCCCcccccC-CccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEE
Q 042603          670 TSMSGIDLSCNKLTGEI-PTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFR  748 (874)
Q Consensus       670 ~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~  748 (874)
                      +++++|+|++|+|++.+ +..|+++++|+.|+|++|++++..++.|..+++|++|+|++|+|++..|..|.++++|+.|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            47889999999998644 67789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          749 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       749 ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      +++|+|++..|..|..+++++.+++.|||+.|+|++
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccch
Confidence            999999999999999999999999999999997654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=8e-16  Score=149.37  Aligned_cols=146  Identities=29%  Similarity=0.468  Sum_probs=92.4

Q ss_pred             hhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccccc
Q 042603          540 IHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSE  619 (874)
Q Consensus       540 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~  619 (874)
                      +..+++|++|++++|++++..  .++.+++|++|++++|++++ +| .+..+++|+.+++++|.+.. + ..+..     
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~-----  132 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVH-----  132 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGG-----
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccccc-c-ccccc-----
Confidence            445556666666666665432  24556666666666666653 22 35666666666666666531 1 11111     


Q ss_pred             ccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeE
Q 042603          620 GYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL  699 (874)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  699 (874)
                                                                       ++.++.+++++|.+++  +..+..+++|+.+
T Consensus       133 -------------------------------------------------l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l  161 (210)
T d1h6ta2         133 -------------------------------------------------LPQLESLYLGNNKITD--ITVLSRLTKLDTL  161 (210)
T ss_dssp             -------------------------------------------------CTTCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred             -------------------------------------------------cccccccccccccccc--ccccccccccccc
Confidence                                                             2366677777777763  3356677888888


Q ss_pred             ecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccC
Q 042603          700 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAY  751 (874)
Q Consensus       700 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~  751 (874)
                      ++++|++++..|  ++++++|++|+|++|+|+. +| .+..+++|++|++++
T Consensus       162 ~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccc--ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            888888876433  7788888888888888874 34 578888888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=7.5e-16  Score=149.55  Aligned_cols=166  Identities=20%  Similarity=0.295  Sum_probs=135.9

Q ss_pred             CCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCC
Q 042603           28 SFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCEL  107 (874)
Q Consensus        28 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l  107 (874)
                      .+.+|++|++++|.+.+. +  .+..+++|++|++++|.+.....     ++.+++|++|++++|+++..    ..++++
T Consensus        44 ~L~~L~~L~l~~~~i~~l-~--~l~~l~~L~~L~L~~n~i~~l~~-----~~~l~~L~~L~l~~n~i~~l----~~l~~l  111 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV-Q--GIQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDL----SSLKDL  111 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC-T--TGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCG----GGGTTC
T ss_pred             HhcCccEEECcCCCCCCc-h--hHhhCCCCCEEeCCCccccCccc-----cccCcccccccccccccccc----cccccc
Confidence            467899999999988643 2  47889999999999998873333     67899999999999998762    358889


Q ss_pred             CCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEc
Q 042603          108 VHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDV  187 (874)
Q Consensus       108 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  187 (874)
                      ++|+.|++++|.+...  ..+.++++++.+++++|.+++  +..+..+++|+++++++|++++..  .++++++|++|++
T Consensus       112 ~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~L  185 (210)
T d1h6ta2         112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYL  185 (210)
T ss_dssp             TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             cccccccccccccccc--ccccccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEEC
Confidence            9999999999988653  357889999999999999874  345778899999999999998643  3889999999999


Q ss_pred             ccccccccCCccccCCCCCCCEEEccc
Q 042603          188 SYNQLTENISSSPLMHLTSIEELILSN  214 (874)
Q Consensus       188 ~~n~l~~~~~~~~l~~l~~L~~L~l~~  214 (874)
                      ++|++++ ++  .+.++++|++|++++
T Consensus       186 s~N~i~~-l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         186 SKNHISD-LR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSSCCCB-CG--GGTTCTTCSEEEEEE
T ss_pred             CCCCCCC-Ch--hhcCCCCCCEEEccC
Confidence            9999875 55  488999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.8e-15  Score=145.54  Aligned_cols=163  Identities=25%  Similarity=0.340  Sum_probs=134.1

Q ss_pred             cCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccC
Q 042603           27 ASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCE  106 (874)
Q Consensus        27 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~  106 (874)
                      ..++++++|++++|.+.. +  ..++.+++|++|++++|.+.....     ++++++|++|++++|.+...    ..+.+
T Consensus        37 ~~l~~l~~L~l~~~~i~~-l--~~l~~l~nL~~L~Ls~N~l~~~~~-----l~~l~~L~~L~l~~n~~~~~----~~l~~  104 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-I--DGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADI----TPLAN  104 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-C--TTGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCC----GGGTT
T ss_pred             HHhcCCCEEECCCCCCCC-c--cccccCCCcCcCccccccccCccc-----ccCCcccccccccccccccc----ccccc
Confidence            456899999999998863 3  257889999999999998874333     78899999999999988763    35789


Q ss_pred             CCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEE
Q 042603          107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLD  186 (874)
Q Consensus       107 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  186 (874)
                      +++|+.|++++|.+....  .+.++++|+.|++++|.+.. ++ .+..+++|++|++++|++++..  .++++++|++|+
T Consensus       105 l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~  178 (199)
T d2omxa2         105 LTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLD  178 (199)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             cccccccccccccccccc--ccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCCc--cccCCCCCCEEE
Confidence            999999999999887643  47889999999999999874 33 5888999999999999998643  488999999999


Q ss_pred             cccccccccCCccccCCCCCCCEE
Q 042603          187 VSYNQLTENISSSPLMHLTSIEEL  210 (874)
Q Consensus       187 L~~n~l~~~~~~~~l~~l~~L~~L  210 (874)
                      +++|++++ ++  .++++++|++|
T Consensus       179 ls~N~i~~-i~--~l~~L~~L~~L  199 (199)
T d2omxa2         179 ISSNKVSD-IS--VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCC-CG--GGGGCTTCSEE
T ss_pred             CCCCCCCC-Cc--cccCCCCCCcC
Confidence            99999876 54  47888998876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3.2e-15  Score=143.76  Aligned_cols=176  Identities=26%  Similarity=0.350  Sum_probs=138.5

Q ss_pred             EEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEE
Q 042603           35 LSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELY  114 (874)
Q Consensus        35 L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~  114 (874)
                      ..++.+.+++.+.   ...+.++++|+++++.+..-..     ++.+++|++|++++|+++..    ..++++++|++|+
T Consensus        23 ~~l~~~~~~~~~~---~~~l~~l~~L~l~~~~i~~l~~-----l~~l~nL~~L~Ls~N~l~~~----~~l~~l~~L~~L~   90 (199)
T d2omxa2          23 TVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI----TPLKNLTKLVDIL   90 (199)
T ss_dssp             HHTTCSSTTSEEC---HHHHTTCCEEECTTSCCCCCTT-----GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEE
T ss_pred             HHhCCCCCCCccC---HHHhcCCCEEECCCCCCCCccc-----cccCCCcCcCccccccccCc----ccccCCccccccc
Confidence            3456666665542   3467899999999998874334     67899999999999998863    2488999999999


Q ss_pred             cCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccc
Q 042603          115 IRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE  194 (874)
Q Consensus       115 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  194 (874)
                      +++|.+....  .+.++++|+.|++++|.+...  ..+..+++|+.|++++|++...  +.+..+++|++|++.+|++++
T Consensus        91 l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2          91 MNNNQIADIT--PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC
T ss_pred             cccccccccc--ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccC
Confidence            9999887543  478999999999999988753  3478899999999999998743  458899999999999999986


Q ss_pred             cCCccccCCCCCCCEEEccccccccccCcccccCCCCCce
Q 042603          195 NISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKT  234 (874)
Q Consensus       195 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~  234 (874)
                       ++  .++++++|++|++++|+++..   ..+.++++|+.
T Consensus       165 -l~--~l~~l~~L~~L~ls~N~i~~i---~~l~~L~~L~~  198 (199)
T d2omxa2         165 -LK--PLANLTTLERLDISSNKVSDI---SVLAKLTNLES  198 (199)
T ss_dssp             -CG--GGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSE
T ss_pred             -Cc--cccCCCCCCEEECCCCCCCCC---ccccCCCCCCc
Confidence             44  488999999999999988642   24556666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.2e-15  Score=152.45  Aligned_cols=181  Identities=14%  Similarity=0.117  Sum_probs=76.4

Q ss_pred             CCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEcccc-CCCCCccccccccCCC
Q 042603           30 SSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYS-RLNKNTILDQGLCELV  108 (874)
Q Consensus        30 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~~~~~~~~~~~l~~l~  108 (874)
                      .+|++||+++|.+.+......+.++++|++|+++++.+..  . ....++.+++|++|+++++ .++.. .+...+.+++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~--~-~~~~l~~~~~L~~L~Ls~c~~itd~-~l~~l~~~~~  121 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD--P-IVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCS  121 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH--H-HHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCT
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCc--H-HHHHHhcCCCCcCcccccccccccc-ccchhhHHHH
Confidence            3555555555544433222234455555555555554320  0 1112344555555555553 22221 1111223455


Q ss_pred             CCcEEEcCCCC-CCCc-chhcccC-CCCCCEEEccCCc--CCCC-CcccccCCCCCCEEEccCCc-CCCCccccccCCCC
Q 042603          109 HLQELYIRDND-LRDS-LLWCLAN-MTSLQVLNVASNQ--LTGN-FPPGFCELVLLRELYIDNND-LRGSLPLCLANLTS  181 (874)
Q Consensus       109 ~L~~L~L~~n~-i~~~-~~~~~~~-l~~L~~L~Ls~n~--i~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~  181 (874)
                      +|++|++++|. +++. ....+.. .++|+.|+++++.  ++.. +...+.++++|++|++++|. +++..+..+.++++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            55555555542 2211 1111222 3455555555431  2211 11112334555555555542 44444445555555


Q ss_pred             CCEEEcccc-cccccCCccccCCCCCCCEEEcccc
Q 042603          182 LRVLDVSYN-QLTENISSSPLMHLTSIEELILSNN  215 (874)
Q Consensus       182 L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~l~~n  215 (874)
                      |++|++++| .+++.... .++++++|++|+++++
T Consensus       202 L~~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             CCEEECCCCCCCChHHHH-HHhcCCCCCEEeeeCC
Confidence            555555553 23322222 3455555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.8e-15  Score=150.54  Aligned_cols=223  Identities=18%  Similarity=0.210  Sum_probs=114.6

Q ss_pred             EEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEccc
Q 042603          331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN  410 (874)
Q Consensus       331 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~  410 (874)
                      ++|++++.+...+...+..  .....+.++...+..... ......+|++||++++.+++.....++..+++|++|++++
T Consensus         4 ~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             EEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            5666666554333333332  245566666555442222 2334457778888777776554455556677777777777


Q ss_pred             CcccccCCccccCCCCCCeEEccCCc-Cccc-CCccccccCCCCeEEccCCc-CCCC-Cchhhhc-cccCCeeecCCCc-
Q 042603          411 NTLQGHIFSEKFNLTNLKRLQLDGNK-FIGE-IPESLSKCYLLGGLYLSDNH-LSGK-IPRWLGS-LLALQDIIMPNNN-  484 (874)
Q Consensus       411 n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~-l~~L~~L~l~~n~-  484 (874)
                      +.+++..+..+..+++|++|++++|. ++.. +......+++|++|++++|. +++. +...+.. .++|+.|+++++. 
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            77766556666667777777777753 3321 11123456777777777653 2211 1111222 3456666665542 


Q ss_pred             -cccc-CCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCc-cCCCCCc
Q 042603          485 -LEGP-IPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN-RLHGSIP  561 (874)
Q Consensus       485 -l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~  561 (874)
                       ++.. +...+.++++|++|++++|.                      .+++.....+..+++|++|++++| .+++...
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~----------------------~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l  218 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSV----------------------MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL  218 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCT----------------------TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred             cccccccccccccccccccccccccc----------------------CCCchhhhhhcccCcCCEEECCCCCCCChHHH
Confidence             2111 11122344555555555432                      233333334444555555555553 3443333


Q ss_pred             hhhcCCCCCcEEEccCc
Q 042603          562 NWIDKLPQLSYILLANN  578 (874)
Q Consensus       562 ~~~~~l~~L~~L~l~~n  578 (874)
                      ..++++++|+.|+++++
T Consensus       219 ~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         219 LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTS
T ss_pred             HHHhcCCCCCEEeeeCC
Confidence            44455555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.2e-14  Score=127.39  Aligned_cols=112  Identities=16%  Similarity=0.203  Sum_probs=98.7

Q ss_pred             CcceEEcCCCcccccCCccccccccCCeEecCCc-ccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603          671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHN-NLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV  749 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l  749 (874)
                      ..+.++.++++++ ..|..+..+++|++|++++| .|+.+.++.|.++++|+.|+|++|+|++..|.+|..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4567899999998 67888999999999999876 599888899999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603          750 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  784 (874)
Q Consensus       750 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l  784 (874)
                      ++|+|+...+..+. ...+..+++.||||.|+|.+
T Consensus        88 s~N~l~~l~~~~~~-~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTVQ-GLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTTC-SCCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhhc-cccccccccCCCcccCCchH
Confidence            99999977766554 44688999999999996643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.3e-13  Score=117.43  Aligned_cols=119  Identities=29%  Similarity=0.342  Sum_probs=80.0

Q ss_pred             CEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcc
Q 042603           85 RILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYID  164 (874)
Q Consensus        85 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  164 (874)
                      |+|+|++|+++..    ..+.++++|++|++++|+++. +|..++.+++|++|++++|.+++ +| .+..+++|++|+++
T Consensus         1 R~L~Ls~n~l~~l----~~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVL----CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSC----CCGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCC----cccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-ccccccccCeEECC
Confidence            5677888877652    246777788888888888774 45567777888888888887774 33 47777888888888


Q ss_pred             CCcCCCCc-cccccCCCCCCEEEccccccccc--CCccccCCCCCCCEE
Q 042603          165 NNDLRGSL-PLCLANLTSLRVLDVSYNQLTEN--ISSSPLMHLTSIEEL  210 (874)
Q Consensus       165 ~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~l~~L~~L  210 (874)
                      +|+++... ...+..+++|++|++++|++++.  .+......+|+|+.+
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            88776443 24577777788888887777641  122223345666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=127.05  Aligned_cols=126  Identities=21%  Similarity=0.113  Sum_probs=60.4

Q ss_pred             cCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 042603           80 SMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLR  159 (874)
Q Consensus        80 ~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  159 (874)
                      ++.++++|+|++|+++..   +..+..+++|++|++++|+|+..  +.+..+++|++|++++|.++...+..+..+++|+
T Consensus        16 n~~~lr~L~L~~n~I~~i---~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CcCcCcEEECCCCCCCcc---CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            344455555555555442   22334455555555555555432  2345555555555555555543333334455555


Q ss_pred             EEEccCCcCCCCcc-ccccCCCCCCEEEcccccccccCCc---cccCCCCCCCEEE
Q 042603          160 ELYIDNNDLRGSLP-LCLANLTSLRVLDVSYNQLTENISS---SPLMHLTSIEELI  211 (874)
Q Consensus       160 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~  211 (874)
                      +|++++|+++.... ..+..+++|++|++++|.++. .+.   ..+..+++|++||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            55555555543211 234555555555555555543 221   1244455555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=3.4e-14  Score=149.82  Aligned_cols=86  Identities=20%  Similarity=0.256  Sum_probs=47.4

Q ss_pred             CcceEEcCCCccccc----CCccccccccCCeEecCCcccccchhhh----ccC--CCCCCEEECCCCcCccc----CCh
Q 042603          671 SMSGIDLSCNKLTGE----IPTQIGYLTRIRALNLSHNNLTGTIPTT----FSN--LKQIESLDLSYNLLHGK----IPP  736 (874)
Q Consensus       671 ~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~--l~~L~~LdLs~N~l~~~----~p~  736 (874)
                      .|+.|++++|.++..    +...+...++|++|+|++|.|++.-...    +..  .+.|++||+++|+|+..    +..
T Consensus       216 ~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~  295 (344)
T d2ca6a1         216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  295 (344)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             hhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHH
Confidence            455555555555422    2334555666666777776666542222    222  24577777777776542    222


Q ss_pred             hhh-cCCCCCeEEccCCCCcc
Q 042603          737 QLI-VLNTLAVFRVAYNNLSG  756 (874)
Q Consensus       737 ~l~-~l~~L~~l~ls~N~l~~  756 (874)
                      .+. +.++|+.|++++|.+..
T Consensus       296 ~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         296 VIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHccCCCCCEEECCCCcCCC
Confidence            332 45667777777777653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.1e-13  Score=125.13  Aligned_cols=125  Identities=21%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             cccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEc
Q 042603          472 LLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDL  551 (874)
Q Consensus       472 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L  551 (874)
                      ...+++|++++|+++. ++..+..+++|+.|++++|+++. ++....+++|++|++++|+++.+.+..+..+++|+.|++
T Consensus        17 ~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            3344445555555442 23334445555556666555552 234444556666666666666666666666777777777


Q ss_pred             cCccCCCCCc-hhhcCCCCCcEEEccCccCcccC---CccccCCCCCCEEE
Q 042603          552 SYNRLHGSIP-NWIDKLPQLSYILLANNYIEGEI---PVQLCQLKEVRLID  598 (874)
Q Consensus       552 s~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~  598 (874)
                      ++|+++.... ..+..+++|++|++++|++....   +..+..+++|+.||
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            7777664321 35666777777777777765322   12356677777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=1.5e-13  Score=144.70  Aligned_cols=164  Identities=18%  Similarity=0.145  Sum_probs=86.8

Q ss_pred             CccccccCCCCeEEccCCcCCCCCc----hhhhccccCCeeecCCCccccc----------CCccccCCCCCCEEECcCC
Q 042603          442 PESLSKCYLLGGLYLSDNHLSGKIP----RWLGSLLALQDIIMPNNNLEGP----------IPNEFCQLDCLKVLDLSNN  507 (874)
Q Consensus       442 ~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~L~~n  507 (874)
                      ...+.....+++|++++|.+.....    ..+...++|+.++++++.....          +...+..+++|+.|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            3445666777778887777653222    2344556677777766543211          1122445566777777777


Q ss_pred             cCcccCCCCC-----CCCcccEEEeeCcccCccchh-------------hhhcCCCCcEEEccCccCCCCC----chhhc
Q 042603          508 SIFGTLPSCL-----SLGSIEQVHLSKNKIEGQLES-------------IIHYYPYLVTLDLSYNRLHGSI----PNWID  565 (874)
Q Consensus       508 ~l~~~~~~~~-----~~~~L~~L~l~~n~i~~~~~~-------------~~~~l~~L~~L~Ls~n~l~~~~----~~~~~  565 (874)
                      .+.......+     ..++|++|++++|.++.....             .....+.|+.+++++|++....    ...+.
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            6643211111     245666666666655422111             1123456666666666655321    22334


Q ss_pred             CCCCCcEEEccCccCccc-----CCccccCCCCCCEEEccCCcCC
Q 042603          566 KLPQLSYILLANNYIEGE-----IPVQLCQLKEVRLIDLSHNNLS  605 (874)
Q Consensus       566 ~l~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~Ls~N~l~  605 (874)
                      .++.|+.|++++|++...     +...+..+++|+.|++++|.++
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhccccccccccc
Confidence            456666666666665431     2233455666666666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.7e-12  Score=112.87  Aligned_cols=103  Identities=26%  Similarity=0.231  Sum_probs=56.4

Q ss_pred             HhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCC-cccccCCC
Q 042603           78 SESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNF-PPGFCELV  156 (874)
Q Consensus        78 ~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~  156 (874)
                      ++.+++|++|++++|+++.   +|..++.+++|++|++++|.|++. + .+.++++|++|++++|++.... ...+..++
T Consensus        16 l~~l~~L~~L~ls~N~l~~---lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~   90 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP   90 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC---CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             cccCCCCCEEECCCCccCc---chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCC
Confidence            4455555666666665554   234555666666666666666543 2 3566666666666666665332 13455666


Q ss_pred             CCCEEEccCCcCCCC---ccccccCCCCCCEE
Q 042603          157 LLRELYIDNNDLRGS---LPLCLANLTSLRVL  185 (874)
Q Consensus       157 ~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L  185 (874)
                      +|++|++++|.++..   .......+++|+.|
T Consensus        91 ~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          91 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            666666666665432   12233345555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=2.4e-13  Score=129.55  Aligned_cols=130  Identities=21%  Similarity=0.272  Sum_probs=88.3

Q ss_pred             CchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCccc
Q 042603          560 IPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSY  639 (874)
Q Consensus       560 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  639 (874)
                      +|..+..+++|++|++++|+|+.. + .+..+++|+.|++++|.++ .+|.....                         
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-------------------------   91 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAV-------------------------   91 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHH-------------------------
T ss_pred             hhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccc-------------------------
Confidence            445566666777777777776632 2 3666677777777777665 33322111                         


Q ss_pred             CCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchh-hhccCCC
Q 042603          640 FPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP-TTFSNLK  718 (874)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~  718 (874)
                                                   ++.|+.|++++|+++. + +.+..+++|+.|+|++|+|+.... ..++.++
T Consensus        92 -----------------------------~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~  140 (198)
T d1m9la_          92 -----------------------------ADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALD  140 (198)
T ss_dssp             -----------------------------HHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTT
T ss_pred             -----------------------------cccccccccccccccc-c-ccccccccccccccccchhccccccccccCCC
Confidence                                         2367788888888884 3 347788899999999999986533 5688899


Q ss_pred             CCCEEECCCCcCcccCChh----------hhcCCCCCeEE
Q 042603          719 QIESLDLSYNLLHGKIPPQ----------LIVLNTLAVFR  748 (874)
Q Consensus       719 ~L~~LdLs~N~l~~~~p~~----------l~~l~~L~~l~  748 (874)
                      +|+.|+|++|++....+..          +..+++|+.||
T Consensus       141 ~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999999887654432          45666777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.3e-11  Score=108.63  Aligned_cols=85  Identities=19%  Similarity=0.221  Sum_probs=71.5

Q ss_pred             cCcceEEcCCC-cccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEE
Q 042603          670 TSMSGIDLSCN-KLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFR  748 (874)
Q Consensus       670 ~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~  748 (874)
                      +++++|++++| .++...+..|.++++|+.|+|++|+|+.+.|.+|..+++|++|||++|+|+...+..+..+ +|+.|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccc
Confidence            47788888766 4886677889999999999999999998889999999999999999999996555555544 699999


Q ss_pred             ccCCCCc
Q 042603          749 VAYNNLS  755 (874)
Q Consensus       749 ls~N~l~  755 (874)
                      +++|++.
T Consensus       110 L~~Np~~  116 (156)
T d2ifga3         110 LSGNPLH  116 (156)
T ss_dssp             CCSSCCC
T ss_pred             cCCCccc
Confidence            9999885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=5.8e-13  Score=126.82  Aligned_cols=103  Identities=26%  Similarity=0.321  Sum_probs=46.1

Q ss_pred             hcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCc-ccccCCCC
Q 042603           79 ESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFP-PGFCELVL  157 (874)
Q Consensus        79 ~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~  157 (874)
                      ..+++|++|++++|.++..   +.....+++|++|++++|+++..  ..+.++++|++|++++|.++.... ..+..+++
T Consensus        67 ~~l~~L~~L~Ls~N~i~~i---~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          67 SGMENLRILSLGRNLIKKI---ENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             HHHTTCCEEECCEEEECSC---SSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             cCCccccChhhcccccccc---ccccccccccccccccccccccc--ccccccccccccccccchhccccccccccCCCc
Confidence            3444444444444444331   12222233445555555544432  124444455555555555442211 23445555


Q ss_pred             CCEEEccCCcCCCCccc----------cccCCCCCCEEE
Q 042603          158 LRELYIDNNDLRGSLPL----------CLANLTSLRVLD  186 (874)
Q Consensus       158 L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~  186 (874)
                      |++|++++|.+....+.          .+..+++|+.||
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            55555555544322221          245667777775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.2e-08  Score=91.12  Aligned_cols=108  Identities=20%  Similarity=0.176  Sum_probs=65.5

Q ss_pred             CCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCC
Q 042603           31 SLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHL  110 (874)
Q Consensus        31 ~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L  110 (874)
                      ..+.|++++.....     .+..+..+..+....+..    ..+..+...++.|++|+|++|+++....++..+..+++|
T Consensus        23 ~~~~Ldls~l~~~~-----~l~~~~~~~~l~~~~~~~----~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L   93 (162)
T d1koha1          23 SQQALDLKGLRSDP-----DLVAQNIDVVLNRRSSMA----ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL   93 (162)
T ss_dssp             SSCCBCCCCCSSCT-----TTTTTTCCCCTTSHHHHH----HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTC
T ss_pred             hhCeeecccCCCCc-----hhhhccchhhcchhhhHh----hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcc
Confidence            45667776654321     223333333333322221    223334567888888888888888755455566778888


Q ss_pred             cEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCC
Q 042603          111 QELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGN  147 (874)
Q Consensus       111 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~  147 (874)
                      +.|++++|.|+...+-.+.+..+|+.|++++|.+...
T Consensus        94 ~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          94 KILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             cccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            8888888888765553444445677777777777644

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.9e-07  Score=82.55  Aligned_cols=66  Identities=23%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             ccCcceEEcCCCcccccC--CccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccC
Q 042603          669 LTSMSGIDLSCNKLTGEI--PTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI  734 (874)
Q Consensus       669 ~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~  734 (874)
                      ++.|++|+|++|+|+...  +..+..+++|+.|||++|+|+...+-.+.....|+.|++++|++++..
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            345556666666655332  233455556666666666665443333333345555666666555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.91  E-value=6.6e-06  Score=74.58  Aligned_cols=94  Identities=14%  Similarity=0.116  Sum_probs=45.4

Q ss_pred             CCCCCCEEEccCC-ccccccc---CccccCCCCCcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCcc--c
Q 042603           28 SFSSLKYLSMRGC-VLKGALH---GQDFHEFKNLEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTI--L  100 (874)
Q Consensus        28 ~l~~L~~L~Ls~~-~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~--~  100 (874)
                      +.++|++|+|+++ .++....   ..++...++|++|++++|.+. .....+..++...+.|++|+|++|.+...+.  +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456666666653 2332210   123444555555555555544 1122233445556666666666666554221  2


Q ss_pred             cccccCCCCCcEEEcCCCCCC
Q 042603          101 DQGLCELVHLQELYIRDNDLR  121 (874)
Q Consensus       101 ~~~l~~l~~L~~L~L~~n~i~  121 (874)
                      ..++...+.|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            234455555666666555433

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.90  E-value=7.3e-06  Score=74.26  Aligned_cols=117  Identities=11%  Similarity=0.022  Sum_probs=85.0

Q ss_pred             CCCCCCEEecCCC-CCCC---CchhhhccCCCCCCEEEccCCccccccc---CccccCCCCCcEEECCCcccc-ccchhH
Q 042603            3 NFTNLEELILVES-DLHV---SQLLQSIASFSSLKYLSMRGCVLKGALH---GQDFHEFKNLEHLVMDRMLVE-VDTSFL   74 (874)
Q Consensus         3 ~l~~L~~L~Ls~~-~~~~---~~~~~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-~~~~~~   74 (874)
                      +.++|++|+|+++ .+..   ..+...+...++|++|+|++|.+.+...   ...+...+.|++|++++|.+. .....+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4589999999985 4632   2356778889999999999999874422   234567799999999999887 333445


Q ss_pred             HHHHhcCCCCCEEEccccCCCCCc-----cccccccCCCCCcEEEcCCCC
Q 042603           75 QIVSESMASLRILSLSYSRLNKNT-----ILDQGLCELVHLQELYIRDND  119 (874)
Q Consensus        75 ~~~~~~l~~L~~L~Ls~n~~~~~~-----~~~~~l~~l~~L~~L~L~~n~  119 (874)
                      ..++...+.|++|++++|.+....     .+...+...++|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            556788899999999998765421     133455566777777776653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.47  E-value=3.6e-05  Score=69.59  Aligned_cols=117  Identities=13%  Similarity=0.068  Sum_probs=69.9

Q ss_pred             cCCCCCCEEEccCC-ccccccc---CccccCCCCCcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCc--c
Q 042603           27 ASFSSLKYLSMRGC-VLKGALH---GQDFHEFKNLEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNT--I   99 (874)
Q Consensus        27 ~~l~~L~~L~Ls~~-~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~--~   99 (874)
                      .+.+.|++|+|+++ .++....   ..++...++|++|++++|.+. .....+..++...+.++.++++++.+....  .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            45577777777763 3442221   234456677777777777655 223334445667777888888777775432  1


Q ss_pred             ccccccCCCCCcEEEcC--CCCCCC----cchhcccCCCCCCEEEccCCc
Q 042603          100 LDQGLCELVHLQELYIR--DNDLRD----SLLWCLANMTSLQVLNVASNQ  143 (874)
Q Consensus       100 ~~~~l~~l~~L~~L~L~--~n~i~~----~~~~~~~~l~~L~~L~Ls~n~  143 (874)
                      +...+...++|+.++|+  +|.+..    .+...+...+.|+.|+++.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            33456677778775554  455544    233455677888888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.42  E-value=5.6e-05  Score=68.23  Aligned_cols=43  Identities=19%  Similarity=0.159  Sum_probs=18.4

Q ss_pred             hcCCCCCEEEccccCCCCCcc--ccccccCCCCCcEEEcCCCCCC
Q 042603           79 ESMASLRILSLSYSRLNKNTI--LDQGLCELVHLQELYIRDNDLR  121 (874)
Q Consensus        79 ~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~l~~L~~L~L~~n~i~  121 (874)
                      ...++|++|++++|.+.....  +...+...+.++.+++++|.+.
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            344445555555554432111  1123334444555555554443