Citrus Sinensis ID: 042619


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVPL
ccccccEEEEccccEEEEcccccHHHHHHHHHHccccEEEcccccccccccccccccccHHHHHHcccccEEEEEEEEEEccccEEEccccccccEEEEcccccccEEEEEEEEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccEEEEEEEEEEEccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccc
cccccEEEEEcccccEEEEcccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccccccHEHcHHHHEHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccHcccccccccccccc
LAKLRSIEVDINNKTAWVQAGATIGELYYRISeksnihgfaaglcpsvgigghitgggyGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAirgggggsFGIILAWKvklvpvpatVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLAnagpkgkrtvttsynalflGDSERLLQVMHMWfpelgltrndcietswIRSVLYIAdfqnntepEILLEAEFLFKNYFKAksdfvkepipesVLEGLWKMLleednpvmiwnpyggmmskiseyeipfphrkgnifKIQYLTLwkdgdqknatkhngwIRRLYDymapyasifpraayvnyrdldlglnkkfnTSYTEASAWGTKYFKDNFNRLVRVKIkvdpdnifrheqsippvpl
laklrsievdinnktawvqaGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKlanagpkgkrtvTTSYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFNTSYteasawgtkyfkdNFNRLVRVKIKvdpdnifrheqsippvpl
LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVgigghitgggygtMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRgggggSFGIILAWKVKLvpvpatvtvftvSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVPL
******IEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAI*******FGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIF***********
*AKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVP*
LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVPL
*AKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVPL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query402 2.2.26 [Sep-21-2011]
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.992 0.732 0.480 1e-102
A6P6V9544 Cannabidiolic acid syntha N/A no 0.990 0.731 0.475 1e-102
A6P6W0545 Cannabidiolic acid syntha N/A no 0.995 0.733 0.479 1e-101
A6P6W1545 Cannabidiolic acid syntha N/A no 0.995 0.733 0.474 1e-101
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.992 0.732 0.478 1e-100
Q9SVG4570 Reticuline oxidase-like p no no 0.982 0.692 0.467 3e-92
P30986538 Reticuline oxidase OS=Esc N/A no 0.970 0.724 0.455 3e-85
P93479535 Reticuline oxidase OS=Pap N/A no 0.970 0.728 0.436 2e-80
O06997447 Uncharacterized FAD-linke yes no 0.848 0.762 0.277 9e-20
Q796Y5451 Uncharacterized FAD-linke no no 0.880 0.784 0.258 9e-14
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function desciption
 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/412 (48%), Positives = 279/412 (67%), Gaps = 13/412 (3%)

Query: 1   LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYG 60
           L  + SI++D++++TAWV+AGAT+GE+YY I+EK+    F  G CP+VG+GGH +GGGYG
Sbjct: 132 LRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYG 191

Query: 61  TMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPV 120
            +MR YGLAADN++DA +V+  G++LDR++MGEDLFWAIRGGGG +FGII AWK+KLV V
Sbjct: 192 ALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAV 251

Query: 121 PATVTVFTVSKTLE-QGATKILYKWQQVADKLDEDLFIR---VIIKLANAGPKGKRTVTT 176
           P+  T+F+V K +E  G  K+  KWQ +A K D+DL +    +   + +   K K TV  
Sbjct: 252 PSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHG 311

Query: 177 SYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQN----NTEPEILL 232
            ++++F G  + L+ +M+  FPELG+ + DC E SWI + ++ +   N    N + EILL
Sbjct: 312 YFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILL 371

Query: 233 EAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEED--NPVMIWNPYGGMMSKISEYEI 290
           +     K  F  K D+VK+PIPE+ +  + + L EED    + +  PYGG+M +ISE  I
Sbjct: 372 DRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAI 431

Query: 291 PFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDL 350
           PFPHR G ++++ Y   W+   Q++  KH  W+R +Y++  PY S  PR AY+NYRDLDL
Sbjct: 432 PFPHRAGIMYELWYTASWE--KQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDL 489

Query: 351 G-LNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVP 401
           G  N     +YT+A  WG KYF  NFNRLV+VK KVDP+N FR+EQSIPP+P
Sbjct: 490 GKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 541




Catalyzes the oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing delta(9)-tetrahydrocannabinolate (THCA), the major cannabioid in drug-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 7
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
356533127 543 PREDICTED: reticuline oxidase-like prote 0.997 0.738 0.738 0.0
356533129 540 PREDICTED: reticuline oxidase-like prote 0.997 0.742 0.738 0.0
255564335 548 Reticuline oxidase precursor, putative [ 0.995 0.729 0.750 0.0
147846530 539 hypothetical protein VITISV_003756 [Viti 0.992 0.740 0.743 1e-178
356555926 543 PREDICTED: reticuline oxidase-like prote 0.997 0.738 0.721 1e-178
225444135 539 PREDICTED: reticuline oxidase-like prote 0.992 0.740 0.738 1e-177
449435514 546 PREDICTED: reticuline oxidase-like prote 0.990 0.728 0.742 1e-177
224115654 545 predicted protein [Populus trichocarpa] 0.997 0.735 0.743 1e-177
255564331 548 Reticuline oxidase precursor, putative [ 0.995 0.729 0.748 1e-176
224056801 507 predicted protein [Populus trichocarpa] 0.995 0.788 0.745 1e-176
>gi|356533127|ref|XP_003535119.1| PREDICTED: reticuline oxidase-like protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/402 (73%), Positives = 353/402 (87%), Gaps = 1/402 (0%)

Query: 1   LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYG 60
           L+KLR+I+VDI + TAW+QAGATIGE+YYRI EKS++HGF AGLC S+G+GGHITGG YG
Sbjct: 129 LSKLRAIDVDIEDNTAWIQAGATIGEVYYRIYEKSSVHGFPAGLCTSLGVGGHITGGAYG 188

Query: 61  TMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPV 120
           +MMRKYGL ADNVVDARIVDA G+ILDREAMGEDLFWAIRGGGG SFGI+L WK+KLVPV
Sbjct: 189 SMMRKYGLGADNVVDARIVDANGQILDREAMGEDLFWAIRGGGGASFGILLWWKIKLVPV 248

Query: 121 PATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNA 180
           P TVTVFTV+++LEQ ATKIL++WQ+VA  +DEDLFIRVII+ A  G K +RT+TTSYNA
Sbjct: 249 PETVTVFTVTRSLEQDATKILHRWQEVAPYIDEDLFIRVIIQPATVGNKTERTITTSYNA 308

Query: 181 LFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKN 240
            FLG ++RLLQVM   FPELGLT+ DC+ETSWI+SVLYIA + N+T PE+LL+ +  FKN
Sbjct: 309 QFLGGADRLLQVMKESFPELGLTKKDCLETSWIKSVLYIAGYPNDTPPEVLLQGKSTFKN 368

Query: 241 YFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNIF 300
           YFKAKSDFV++PIPE+ LEGLW+ LLEED+P+MIWNPYGGMMSK SE +IPFPHR G ++
Sbjct: 369 YFKAKSDFVRDPIPETGLEGLWQRLLEEDSPLMIWNPYGGMMSKFSESDIPFPHRNGTLY 428

Query: 301 KIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFNTSY 360
           KIQYLTLW+DGD KNA+KH  WIR+LY+YM PY S FPR AYVNYRDLDLG+NKK +TSY
Sbjct: 429 KIQYLTLWQDGD-KNASKHEDWIRKLYNYMTPYVSKFPREAYVNYRDLDLGMNKKNSTSY 487

Query: 361 TEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVPL 402
            +A+AWG  YFKDNFNRLV++K KVDPDN+FRHEQSIPP+P+
Sbjct: 488 IQATAWGNMYFKDNFNRLVKIKTKVDPDNVFRHEQSIPPLPV 529




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533129|ref|XP_003535120.1| PREDICTED: reticuline oxidase-like protein-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|255564335|ref|XP_002523164.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537571|gb|EEF39195.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147846530|emb|CAN81654.1| hypothetical protein VITISV_003756 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555926|ref|XP_003546280.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|225444135|ref|XP_002268361.1| PREDICTED: reticuline oxidase-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435514|ref|XP_004135540.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] gi|449488542|ref|XP_004158078.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224115654|ref|XP_002317089.1| predicted protein [Populus trichocarpa] gi|222860154|gb|EEE97701.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564331|ref|XP_002523162.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537569|gb|EEF39193.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224056801|ref|XP_002299030.1| predicted protein [Populus trichocarpa] gi|222846288|gb|EEE83835.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.977 0.735 0.619 9.1e-132
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.977 0.738 0.609 4.5e-130
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.987 0.739 0.585 1.9e-124
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.992 0.736 0.562 1e-116
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.990 0.735 0.544 5.8e-114
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.987 0.749 0.493 1e-107
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.977 0.738 0.502 8.6e-104
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.982 0.749 0.467 4.5e-98
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.965 0.729 0.477 6.6e-97
TAIR|locus:2197935530 AT1G26390 [Arabidopsis thalian 0.977 0.741 0.466 8.4e-97
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
 Identities = 247/399 (61%), Positives = 294/399 (73%)

Query:     1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
             L+KLR I VDI + +AWV AGA+IGE+YYRI EKS IHGF AGLC S+            
Sbjct:   137 LSKLRQISVDIESNSAWVHAGASIGEVYYRIQEKSKIHGFPAGLCTSLGIGGHIIGGAYG 196

Query:    61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120
              MMRK+GL ADNV+DARIVDA G+IL+R AMGED+FWAIR     SFG+ILAWK+KL   
Sbjct:   197 SMMRKFGLGADNVLDARIVDADGKILNRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPV 256

Query:   121 XXXXXXXXXSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGK-RTVTTSYN 179
                      ++TLEQ  TK+LYKWQQVADKLDEDLFIRVII+  +  PK K RT++TSY 
Sbjct:   257 PEIVTVFTVTRTLEQDGTKLLYKWQQVADKLDEDLFIRVIIQPTSKTPKSKERTISTSYQ 316

Query:   180 ALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFK 239
               FLGD+ RLLQVM   FP+LGLT+ DC+ETSWI+SV+YIA F +    E LL+ + LFK
Sbjct:   317 GQFLGDANRLLQVMQRSFPQLGLTKKDCLETSWIKSVMYIAGFPSTAPSEALLDGKSLFK 376

Query:   240 NYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNI 299
             NYFKAKSD+V+EPIP   LEGLW+ LLEED+P+ IWNPYGGMM+KI E E PFPHR G +
Sbjct:   377 NYFKAKSDYVEEPIPVEGLEGLWEKLLEEDSPLTIWNPYGGMMAKIPETETPFPHRSGTL 436

Query:   300 FKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFNTS 359
             FKIQ+LTLW+DG    A KH GW+R +Y YM  Y S  PR+AYVNYRDLDLG+N K +  
Sbjct:   437 FKIQWLTLWQDGKTSEA-KHMGWMREMYSYMEQYVSKSPRSAYVNYRDLDLGMNGKGS-- 493

Query:   360 YTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIP 398
               +A  WG +YFK NF RLV +K K DP+N FRHEQSIP
Sbjct:   494 --DAREWGNRYFKGNFERLVEIKAKFDPENFFRHEQSIP 530




GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197935 AT1G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 9e-21
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 7e-19
pfam0803145 pfam08031, BBE, Berberine and berberine like 9e-19
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 3e-06
PRK11230499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 5e-04
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 0.004
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
 Score = 93.4 bits (232), Expect = 9e-21
 Identities = 80/420 (19%), Positives = 139/420 (33%), Gaps = 61/420 (14%)

Query: 1   LAKLRSI-EVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPS----VGIGGHIT 55
           L++L  I E+D  + TA VQAG T+ +L   ++     HG    + PS      IGG+I 
Sbjct: 81  LSRLNRILEIDPEDGTATVQAGVTLEDLEKALAP----HGLFLPVDPSSSGTATIGGNIA 136

Query: 56  GGGYGTMMRKYGLAADNVVDARIVDARGRILD------REAMGEDLFWAIRGGGGGSFGI 109
               G    +YGL  DNV+  R+V   G IL       ++  G DL  A+  G  G+ GI
Sbjct: 137 TNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDL-TALFVGSEGTLGI 195

Query: 110 ILAWKVKLVPVPAT-VTVFTVSKTLEQ-----GATKILYKWQQVADKLDEDLFIRVIIKL 163
           I    +KL+P+P T  T      ++E       A   L +   V     E +   +    
Sbjct: 196 ITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGVIPAALEFMDRPIKAAE 255

Query: 164 ANAGPKGKRTVTTSYNALFL-GDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADF 222
           A  G         +   + + G  E  +        EL L      +    + +   A+ 
Sbjct: 256 AYLGGGALPLEAPARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDL---AEA 312

Query: 223 QNNTEPEILLEAEFLFKNYFKAKSDFVKEP--IPESVLEGLWKMLLEEDNPVMIWNPYGG 280
                  + L  +             ++E   +P   L    + +L      ++      
Sbjct: 313 A-----RLWLARKGALAAAGALGPGVIQEDVVVPLEALPEFLREILA-----LLDKAGLA 362

Query: 281 MMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRA 340
           +        +      GN+    +L +  D   +           L + +   A      
Sbjct: 363 LR-----VALFGHAGDGNL----HLNILYDVGDEAEELA--RAEALNEAIEALAV---EL 408

Query: 341 AYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 400
                 +  +G  K           +      + +  L  +K   DP+ IF   +    +
Sbjct: 409 GGSISGEHGIGRTKA---------EFLELEPGEAWALLRAIKRAFDPNGIFNPGKLFRLL 459


Length = 459

>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 402
PLN02441525 cytokinin dehydrogenase 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.92
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 99.92
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.91
PLN02805555 D-lactate dehydrogenase [cytochrome] 99.9
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.88
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 99.88
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.87
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.86
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.86
KOG1231505 consensus Proteins containing the FAD binding doma 99.85
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.79
KOG1232511 consensus Proteins containing the FAD binding doma 99.67
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.65
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.61
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.57
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.53
PRK11183564 D-lactate dehydrogenase; Provisional 99.49
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.4
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.2
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.96
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.89
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.88
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.86
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.84
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.56
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.27
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 97.86
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 97.72
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 97.61
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 97.26
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 97.25
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 97.17
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 95.36
PLN00107257 FAD-dependent oxidoreductase; Provisional 90.63
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 86.53
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 82.45
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
Probab=99.97  E-value=4.8e-28  Score=245.12  Aligned_cols=141  Identities=21%  Similarity=0.279  Sum_probs=120.1

Q ss_pred             CCCCCc------e-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCceee-ccCCCCcccchhhhcCCCCCCccccccccccc
Q 042619            1 LAKLRS------I-EVDINNKTAWVQAGATIGELYYRISEKSNIHGF-AAGLCPSVGIGGHITGGGYGTMMRKYGLAADN   72 (402)
Q Consensus         1 l~~~~~------i-~~d~~~~~~~v~~G~~~~~l~~~l~~~~~~~~~-~~g~~~~vgvgG~~~~gg~g~~~~~~G~~~d~   72 (402)
                      |++||+      + ++|.+..+|+|++|++|.||.+++.++|.  ++ ..+.+..++|||.+.++|+|..+.+||..+||
T Consensus       116 ms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~Gl--aP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~  193 (525)
T PLN02441        116 MRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGL--APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISN  193 (525)
T ss_pred             CCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCC--ccCCccccCceEEeEEcCCCCccccccccCcHHHh
Confidence            678998      3 78999999999999999999999999873  33 34555678999999999999999999999999


Q ss_pred             EeEEEEEcCCCcEEe-ccCCCCChHHHHhhcCCCCceEEEEEEEEeeecCceEEEEEEEecchhhHHHHHHHH
Q 042619           73 VVDARIVDARGRILD-REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKW  144 (402)
Q Consensus        73 v~~~~vv~~dG~~~~-~~~~~~dLf~a~~G~g~g~~Gvvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (402)
                      |+++||||+||++++ ++.+|+|||||++||+ |+|||||++++|++|.|+....+.+.+....++.+.++.+
T Consensus       194 Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~l  265 (525)
T PLN02441        194 VLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERL  265 (525)
T ss_pred             EEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHH
Confidence            999999999999997 8888999999999987 8999999999999999997766666666444444333333



>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 3e-95
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 3e-89
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 5e-87
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 8e-81
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 8e-81
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 9e-81
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 9e-81
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 9e-81
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-79
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-79
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 4e-16
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 1e-13
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 5e-11
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 9e-11
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 3e-07
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 4e-05
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure

Iteration: 1

Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 179/412 (43%), Positives = 255/412 (61%), Gaps = 13/412 (3%) Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60 L + SI++D++++TAWV+AGAT+GE+YY I+EK+ F G CP+V Sbjct: 105 LRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYG 164 Query: 61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120 +MR YGLAADN++DA +V+ G++LDR++MGEDLFWAIR +FGII AWK+KL Sbjct: 165 ALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAV 224 Query: 121 XXXXXXXXXSKTLE-QGATKILYKWQQVADKLDEDLFIR---VIIKLANAGPKGKRTVTT 176 K +E G K+ KWQ +A K D+DL + + + + K K TV Sbjct: 225 PSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHG 284 Query: 177 SYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQN----NTEPEILL 232 ++++F G + L+ +M+ FPELG+ + DC E SWI + ++ + N N + EILL Sbjct: 285 YFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILL 344 Query: 233 EAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEED--NPVMIWNPYGGMMSKISEYEI 290 + K F K D+VK+PIPE+ + + + L EED + + PYGG+M +ISE I Sbjct: 345 DRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAI 404 Query: 291 PFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDL 350 PFPHR G ++++ Y W+ Q++ KH W+R +Y++ PY S PR AY+NYRDLDL Sbjct: 405 PFPHRAGIMYELWYTASWE--KQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDL 462 Query: 351 G-LNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVP 401 G N +YT+A WG KYF NFNRLV+VK KVDP+N FR+EQSIPP+P Sbjct: 463 GKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-171
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 1e-170
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-148
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-145
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-144
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-144
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-143
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-140
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 2e-99
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 7e-39
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-31
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 8e-17
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 4e-11
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 9e-09
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 1e-07
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 2e-07
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 5e-07
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 1e-06
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 3e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  487 bits (1254), Expect = e-171
 Identities = 197/412 (47%), Positives = 275/412 (66%), Gaps = 13/412 (3%)

Query: 1   LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYG 60
           L  + SI++D++++TAWV+AGAT+GE+YY I+EK+    F  G CP+VG+GGH +GGGYG
Sbjct: 105 LRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYG 164

Query: 61  TMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPV 120
            +MR YGLAADN++DA +V+  G++LDR++MGEDLFWAIRGGGG +FGII AWK+KLV V
Sbjct: 165 ALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAV 224

Query: 121 PATVTVFTVSKTLE-QGATKILYKWQQVADKLDEDLFIRVIIKLANAGP---KGKRTVTT 176
           P+  T+F+V K +E  G  K+  KWQ +A K D+DL +       N      K K TV  
Sbjct: 225 PSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHG 284

Query: 177 SYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQN----NTEPEILL 232
            ++++F G  + L+ +M+  FPELG+ + DC E SWI + ++ +   N    N + EILL
Sbjct: 285 YFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILL 344

Query: 233 EAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNP--VMIWNPYGGMMSKISEYEI 290
           +     K  F  K D+VK+PIPE+ +  + + L EED    + +  PYGG+M +ISE  I
Sbjct: 345 DRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAI 404

Query: 291 PFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDL 350
           PFPHR G ++++ Y   W+  +  +  KH  W+R +Y++  PY S  PR AY+NYRDLDL
Sbjct: 405 PFPHRAGIMYELWYTASWEKQE--DNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDL 462

Query: 351 GLNKKF-NTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVP 401
           G        +YT+A  WG KYF  NFNRLV+VK KVDP+N FR+EQSIPP+P
Sbjct: 463 GKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514


>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.97
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.94
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.92
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.9
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.87
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.87
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.86
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.85
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.83
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.82
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.76
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.75
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.75
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.46
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.43
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.42
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.34
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.27
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 91.44
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 88.55
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 86.45
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 82.6
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=6.5e-71  Score=562.14  Aligned_cols=399  Identities=49%  Similarity=0.943  Sum_probs=336.5

Q ss_pred             CCCCCceEEeCCCCEEEEcCCCCHHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccccccccEeEEEEEc
Q 042619            1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVD   80 (402)
Q Consensus         1 l~~~~~i~~d~~~~~~~v~~G~~~~~l~~~l~~~~~~~~~~~g~~~~vgvgG~~~~gg~g~~~~~~G~~~d~v~~~~vv~   80 (402)
                      |++||+|++|++.++|+||||+++++|+++|.++|.++.+++|.|++|||||+++|||+|.++++||+.+|+|++++||+
T Consensus       105 l~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~G~~s~~~G~~~D~V~~~evV~  184 (518)
T 3vte_A          105 LRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN  184 (518)
T ss_dssp             CTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEEC
T ss_pred             CCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCCccccCCCCchhheEEEEEEEc
Confidence            68899999999999999999999999999999987778899999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCCCChHHHHhhcCCCCceEEEEEEEEeeecCceEEEEEEEecch-hhHHHHHHHHHHHHhhccccceeeE
Q 042619           81 ARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLE-QGATKILYKWQQVADKLDEDLFIRV  159 (402)
Q Consensus        81 ~dG~~~~~~~~~~dLf~a~~G~g~g~~Gvvt~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  159 (402)
                      +||++++.+.+|+|||||+||||+|+|||||+++||++|.|+.+..+.+.+... +++.+++..|+++++++|+++++.+
T Consensus       185 adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~l~~~~  264 (518)
T 3vte_A          185 VDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMT  264 (518)
T ss_dssp             TTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHHHGGGSCTTEEEEE
T ss_pred             cCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHcCCHhHeEEE
Confidence            999999754468999999999855899999999999999999877777777543 5678899999999999999999888


Q ss_pred             EEeeccCC---CCCCceeEEEEEEEEecChHHHHHHHhhhccCCCCCcCcccccchHHHHHHhhccCCC-Cc---hhhhh
Q 042619          160 IIKLANAG---PKGKRTVTTSYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNN-TE---PEILL  232 (402)
Q Consensus       160 ~~~~~~~~---~~~~~~~~i~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~  232 (402)
                      .+...++.   +.+...+.+.+.++|+|+.+++.+.|.+.+++++....++.+++|++++.+++.++.+ .+   .+.++
T Consensus       265 ~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~  344 (518)
T 3vte_A          265 HFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILL  344 (518)
T ss_dssp             EEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHHHHHHHTSSSCCC-----CGGGGG
T ss_pred             EEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchhhhhhhhhcCCccCCccchhhhhc
Confidence            87753321   1111235678889999999999999988788887766778889999988887755543 33   44455


Q ss_pred             hhhhcccccccccccccCCCCCHHHHHHHHHHHhcC--CCcEEEEeeCCCCCCCCCCCCCCCccccCceEEEEEEEEeCC
Q 042619          233 EAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEE--DNPVMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKD  310 (402)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~Gg~~~~~~~~~ta~~~R~~~~~~~~~~~~w~~  310 (402)
                      ++....+.+|+.|+.++.++++++.++.+++.+.+.  +.+.+.+.++||++++++.++||||||+...|.+++.+.|.+
T Consensus       345 ~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~~~~TAf~hR~~~~~~~~~~~~w~~  424 (518)
T 3vte_A          345 DRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEK  424 (518)
T ss_dssp             CTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSCTTSSSCCCCTTCCEEEEEEEEECC
T ss_pred             cCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCCCCCCcccccCcceEEEEEEEecCC
Confidence            554444557788999998889999999999988763  346789999999999999999999999844899999999976


Q ss_pred             CCccchhhHHHHHHHHHHhccccccCCCCceeccccCCccC-CCCCCCcchhcccccccccccccHHHHHHhhhccCCCC
Q 042619          311 GDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLG-LNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDN  389 (402)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Y~N~~d~~~~-~~~~~~~~~~~~~~w~~~~~g~n~~rL~~iK~kyDP~~  389 (402)
                      +.  .+++..+|++++++.|.|+.+..+.|+|+||.|.+++ .+...+++|..++.|++.|||+||+||++||+||||+|
T Consensus       425 ~~--~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~w~~~Yyg~N~~RL~~vK~~yDP~n  502 (518)
T 3vte_A          425 QE--DNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNN  502 (518)
T ss_dssp             TT--THHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHHHHHHHSSTHHHHHHHHHHHHCTTC
T ss_pred             cc--hhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhhHHHHHhHhHHHHHHHHHhhcCchh
Confidence            53  4578899999999999999765668999999998865 21112344555668999999999999999999999999


Q ss_pred             CCcCCCCCCCCC
Q 042619          390 IFRHEQSIPPVP  401 (402)
Q Consensus       390 lF~~~~~i~~~~  401 (402)
                      ||+++|+|+|.+
T Consensus       503 ~F~~~QsI~p~~  514 (518)
T 3vte_A          503 FFRNEQSIPPLP  514 (518)
T ss_dssp             CSCCTTCCCCCC
T ss_pred             cccCCCCCCCCC
Confidence            999999999874



>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 402
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 7e-11
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 1e-09
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]
 Score = 59.2 bits (142), Expect = 7e-11
 Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 6   SIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRK 65
            I V  + +           ++      +             + +GG ++  G      +
Sbjct: 93  RINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGISGQAFR 151

Query: 66  YGLAADNVVDARIVDARGRILD-REAMGEDLFWAIRGGGGGSFGIILAWKVKLVP 119
           +G    NV++  ++   G ++   + +  DLF A+ GG G  FG+I   ++ + P
Sbjct: 152 HGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEP 205


>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.92
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.86
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.76
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.74
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 98.89
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 98.85
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 98.83
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 93.22
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 80.26
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 80.06
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]
Probab=99.92  E-value=1.2e-25  Score=201.38  Aligned_cols=117  Identities=18%  Similarity=0.292  Sum_probs=105.6

Q ss_pred             CCCCCce------EEeCCCCEEEEcCCCCHHHHHHHHHhcCCceeec-cCCCCcccchhhhcCCCCCCcccccccccccE
Q 042619            1 LAKLRSI------EVDINNKTAWVQAGATIGELYYRISEKSNIHGFA-AGLCPSVGIGGHITGGGYGTMMRKYGLAADNV   73 (402)
Q Consensus         1 l~~~~~i------~~d~~~~~~~v~~G~~~~~l~~~l~~~~~~~~~~-~g~~~~vgvgG~~~~gg~g~~~~~~G~~~d~v   73 (402)
                      |++||+|      ++|++..+++||||+++.||.++|.++|  +.++ .+.+..+++||+++++|+|..+++||+.+|+|
T Consensus        82 l~~l~~i~~~~~~~id~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v  159 (206)
T d1w1oa2          82 MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNV  159 (206)
T ss_dssp             GGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSE
T ss_pred             ccccceeeeceeEEEecCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeee
Confidence            4667775      7999999999999999999999999987  4443 44556788999999999999999999999999


Q ss_pred             eEEEEEcCCCcEEe-ccCCCCChHHHHhhcCCCCceEEEEEEEEeeec
Q 042619           74 VDARIVDARGRILD-REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPV  120 (402)
Q Consensus        74 ~~~~vv~~dG~~~~-~~~~~~dLf~a~~G~g~g~~Gvvt~~~~~~~~~  120 (402)
                      +++|||++||++++ ++.+|+||||++||+. |+|||||+++||++|+
T Consensus       160 ~~~evV~~~G~~~~~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         160 LEMDVITGHGEMVTCSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEEEEEETTSCEEEEESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             eEEEEEcCCCcEEEECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            99999999999997 7778999999999987 8999999999999985



>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure