Citrus Sinensis ID: 042625
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2346 | 2.2.26 [Sep-21-2011] | |||||||
| Q99PV0 | 2335 | Pre-mRNA-processing-splic | yes | no | 0.990 | 0.995 | 0.824 | 0.0 | |
| Q6P2Q9 | 2335 | Pre-mRNA-processing-splic | yes | no | 0.990 | 0.995 | 0.824 | 0.0 | |
| P34369 | 2329 | Pre-mRNA-splicing factor | yes | no | 0.979 | 0.987 | 0.807 | 0.0 | |
| Q8T295 | 2327 | Pre-mRNA-processing-splic | yes | no | 0.975 | 0.983 | 0.765 | 0.0 | |
| O14187 | 2363 | Pre-mRNA-splicing factor | yes | no | 0.978 | 0.971 | 0.731 | 0.0 | |
| P33334 | 2413 | Pre-mRNA-splicing factor | yes | no | 0.974 | 0.947 | 0.615 | 0.0 |
| >sp|Q99PV0|PRP8_MOUSE Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2 | Back alignment and function desciption |
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Score = 4120 bits (10686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1935/2347 (82%), Positives = 2150/2347 (91%), Gaps = 23/2347 (0%)
Query: 9 GGPPLAPPGTSGAVPIPPPPSQPSYTVLTTTPSPQEAEARLEEKARKWMQLNSKRYGDKR 68
G P PG P+ P P S E +L+EKARKW QL +KRY +KR
Sbjct: 3 GVFPYRGPGNPVPGPLAPLPDYMS-------------EEKLQEKARKWQQLQAKRYAEKR 49
Query: 69 KFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMP 128
KFGFV+AQKEDMPPEHVRKIIRDHGDM+++K+RHDKRVYLGALK++PHAV KLLENMPMP
Sbjct: 50 KFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMP 109
Query: 129 WEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPF 188
WEQ+RDV VLYHITGAI+FVNEIPWV+EP+Y++QWG+MWIMMRREKRDRRHFKRMRFPPF
Sbjct: 110 WEQIRDVPVLYHITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPF 169
Query: 189 DDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKT-KLINGPSYRKWH 247
DDEEPPLDYADN+LDV+PLE IQLELD EED+ V WFYDH+PL + K +NG +Y++W
Sbjct: 170 DDEEPPLDYADNILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQ 229
Query: 248 LSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKG 307
+LP+M+TL+RLA QLL+DL+D NYFYLFD+++FFT+KALNM IPGGPKFEPL RD+
Sbjct: 230 FTLPMMSTLYRLANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQ 289
Query: 308 DEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVRLGIYHTPMVMYIKTEDPDLPA 367
DEDWNEFNDINK+IIR P+RTEY+IAFP+LYNN P V L YHTP V++IKTEDPDLPA
Sbjct: 290 DEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPA 349
Query: 368 FYYDPLIHPIPSTNKERH--------DDFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPR 419
FY+DPLI+PI + + ++F LPE VEP LKDT LYTD TA GI+LL+APR
Sbjct: 350 FYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPR 409
Query: 420 PFNMRSGRMRRAEDIPLVSDWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK 479
PFN+RSGR RRA DIPLV +WY+EHCP PVKVRVSYQKLLK +VLN L HRPPKAQKK
Sbjct: 410 PFNLRSGRTRRALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKK 469
Query: 480 KHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT 539
++LFRS +ATKFFQ+T+LDW E GLQVC+QGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
Sbjct: 470 RYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT 529
Query: 540 LTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLT 599
LTTKERKKSRFGNAFHLCRE+LRLTKLVVD+++Q+RLGNVDAFQLADGLQY F+HVGQLT
Sbjct: 530 LTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLT 589
Query: 600 GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE 659
GMYRYKY+LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWA WRVWLFF+RGI PLLE
Sbjct: 590 GMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLE 649
Query: 660 RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTI 719
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHD+LD MPEGIKQNKARTI
Sbjct: 650 RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTI 709
Query: 720 LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDK 779
LQHLSEAWRCWKANIPWKVPGLP PIENMILRYVK+KADWWTN AHYNRERIRRGATVDK
Sbjct: 710 LQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDK 769
Query: 780 TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFAPIPFPP 839
TVC+KNLGRLTRL+LKAEQERQHNYLKDGPY+T EEAVA+YTTTVHWLESR+F+PIPFPP
Sbjct: 770 TVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPP 829
Query: 840 LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR 899
LSYKHDTKLLILALERLKE+YSV RLNQ QREELGLIEQAYDNPHEALSRIKRHLLTQR
Sbjct: 830 LSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQR 889
Query: 900 AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP 959
AFKEVGIEFMDLYS+L+PVY++EPLEKITDAYLDQYLWYE DKR LFP WIKPAD+EPPP
Sbjct: 890 AFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPP 949
Query: 960 LLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV 1019
LLVYKWCQGINNLQ +W+TS+G+C VML+++FEK +EKIDLT+LNRLLRL++DHNIADY+
Sbjct: 950 LLVYKWCQGINNLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYM 1009
Query: 1020 TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPHMPN 1079
TAKNNVV++YKDM+HTNSYG+IRGLQFASF+VQYYGLV+DLL+LGL RASE+AGPP MPN
Sbjct: 1010 TAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPN 1069
Query: 1080 EFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYN 1139
+F+++ D E HPIRL+ RYID++HI FRFT +EARDLIQRYLTEHPDPNNEN+VGYN
Sbjct: 1070 DFLSFQDIATEAAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYN 1129
Query: 1140 NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSM 1199
NKKCWPRDARMRLMKHDVNLGR+VFWD+KNRLPRS+TT++WENSFVSVYSKDNPNLLF+M
Sbjct: 1130 NKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNM 1189
Query: 1200 CGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQIL 1259
CGFE RILPK R + E F++ +DGVWNLQNE TKERTA FLRVDDE M+ F NRVRQIL
Sbjct: 1190 CGFECRILPKCRTSYEEFTH-KDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQIL 1248
Query: 1260 MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP 1319
M+SGSTTFTKIVNKWNTALIGLMTYFREA V+TQELLDLLVKCENKIQTRIKIGLNSKMP
Sbjct: 1249 MASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMP 1308
Query: 1320 SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNL 1379
SRFPPV+FYTPKE+GGLGMLSMGH+LIPQSDLR+S+QTDVG+THFRSGMSHEEDQLIPNL
Sbjct: 1309 SRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNL 1368
Query: 1380 YRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRH 1439
YRYIQPWESEFIDSQRVWAEYALKRQEA AQNRRLTLEDLEDSWDRGIPRINTLFQKDRH
Sbjct: 1369 YRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRH 1428
Query: 1440 TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT 1499
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTD+IQALGGVEGILEHT
Sbjct: 1429 TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHT 1488
Query: 1500 LFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY 1559
LFKGTYFPTWEGLFWEKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY
Sbjct: 1489 LFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY 1548
Query: 1560 VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIET 1619
VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHES+VMDLCQV DQELDALEIET
Sbjct: 1549 VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIET 1608
Query: 1620 VQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDMFDQKASNKYWVDVQLRW 1679
VQKETIHPRKSYKMNSSCADILLFA+++W +S+PSL+A+SKD+ D + KYW+D+QLRW
Sbjct: 1609 VQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRW 1668
Query: 1680 GDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQ 1739
GDYDSHDIERY RAKF+DYTTDNMSIYPSPTGV+I +DLAYNLHSA+GNWFPGSKPL+ Q
Sbjct: 1669 GDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQ 1728
Query: 1740 AMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRV 1799
AM KIMK+NPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRV
Sbjct: 1729 AMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRV 1788
Query: 1800 TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL 1859
TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLK+IHTSVWAGQKRLGQLAKWKTAEEVAAL
Sbjct: 1789 TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAAL 1848
Query: 1860 VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILK 1919
+RSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLK+EKFGDLILK
Sbjct: 1849 IRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILK 1908
Query: 1920 ATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIW 1979
ATEPQMVLFN+YDDWLK+ISSYTAFSRLILILRALHVNN++AK++LKPDKT +TEPHHIW
Sbjct: 1909 ATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTVTEPHHIW 1968
Query: 1980 PSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAE 2039
P+L+D++W+KVEV L+DLIL+DY KKNNVN ++LTQSEIRDIILG EI+ PSQQRQQIAE
Sbjct: 1969 PTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAE 2028
Query: 2040 IEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVN 2099
IEKQ KE SQLTA T+T N HGDE+I +TTS YE F SKT+WRVRAISA NL+LR N
Sbjct: 2029 IEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTN 2088
Query: 2100 HIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMP 2159
HIYV+S+DIKETGYTYI+PKN+LKKFICI+DLR QI+GYLYG+SPPDNPQVKEIRCI M
Sbjct: 2089 HIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMV 2148
Query: 2160 PQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDG 2219
PQWGTHQ VHLPS LP+H++L ++EPLGW+HTQPNE PQLSPQD+T+HA+I+ +N WDG
Sbjct: 2149 PQWGTHQTVHLPSQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDG 2208
Query: 2220 EKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFL 2279
EK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQMLLSDRFL
Sbjct: 2209 EKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFL 2268
Query: 2280 GFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEG 2339
GF+MVP WNYNFMGV+H +MKY ++L P+E+YHE HRP+HFL F+ L+EGE+
Sbjct: 2269 GFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSA 2328
Query: 2340 DREDTFS 2346
DRED ++
Sbjct: 2329 DREDLYA 2335
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Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes. Mus musculus (taxid: 10090) |
| >sp|Q6P2Q9|PRP8_HUMAN Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2 | Back alignment and function description |
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| >sp|P34369|PRP8_CAEEL Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q8T295|PRP8_DICDI Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|O14187|SPP42_SCHPO Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp42 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|P33334|PRP8_YEAST Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP8 PE=1 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2346 | ||||||
| 359482368 | 2347 | PREDICTED: pre-mRNA-processing-splicing | 0.993 | 0.993 | 0.976 | 0.0 | |
| 449436124 | 2347 | PREDICTED: pre-mRNA-processing-splicing | 0.995 | 0.994 | 0.969 | 0.0 | |
| 449491045 | 2347 | PREDICTED: LOW QUALITY PROTEIN: pre-mRNA | 0.995 | 0.994 | 0.969 | 0.0 | |
| 359482366 | 2367 | PREDICTED: pre-mRNA-processing-splicing | 0.993 | 0.984 | 0.964 | 0.0 | |
| 224134486 | 2357 | predicted protein [Populus trichocarpa] | 0.998 | 0.994 | 0.966 | 0.0 | |
| 255553223 | 2376 | Pre-mRNA-processing-splicing factor, put | 0.998 | 0.986 | 0.959 | 0.0 | |
| 356557237 | 2358 | PREDICTED: pre-mRNA-processing-splicing | 0.996 | 0.991 | 0.963 | 0.0 | |
| 356547438 | 2358 | PREDICTED: pre-mRNA-processing-splicing | 0.996 | 0.991 | 0.963 | 0.0 | |
| 357455267 | 2398 | Pre-mRNA-processing-splicing factor [Med | 0.995 | 0.974 | 0.946 | 0.0 | |
| 334184042 | 2359 | Pre-mRNA-processing-splicing factor [Ara | 0.997 | 0.992 | 0.943 | 0.0 |
| >gi|359482368|ref|XP_003632762.1| PREDICTED: pre-mRNA-processing-splicing factor 8-like isoform 2 [Vitis vinifera] gi|297743472|emb|CBI36339.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4755 bits (12334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2288/2344 (97%), Positives = 2315/2344 (98%), Gaps = 13/2344 (0%)
Query: 13 LAPPGTSGAVPIPPPPSQPSYTVLTTTPSPQEAEARLEEKARKWMQLNSKRYGDKRKFGF 72
+APPGT G+ PPP +QPSYTVL PSP EAEARLEEKARKWMQLNSKRYGDKRKFGF
Sbjct: 7 IAPPGTGGSTIPPPPAAQPSYTVL---PSPAEAEARLEEKARKWMQLNSKRYGDKRKFGF 63
Query: 73 VEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQV 132
VE QKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQV
Sbjct: 64 VETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQV 123
Query: 133 RDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEE 192
RDVK+LYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEE
Sbjct: 124 RDVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEE 183
Query: 193 PPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLSLPI 252
PPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLSLPI
Sbjct: 184 PPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLSLPI 243
Query: 253 MATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWN 312
MATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWN
Sbjct: 244 MATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWN 303
Query: 313 EFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVRLGIYHTPMVMYIKTEDPDLPAFYYDP 372
EFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKV+L +YHTPM+MYIKTEDPDLPAFYYDP
Sbjct: 304 EFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKTEDPDLPAFYYDP 363
Query: 373 LIHPIPSTNKERH----------DDFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFN 422
LIHPI + NK+R DDFFLPE+VEPLL T LY+DTTAAGISLLFAPRPFN
Sbjct: 364 LIHPITTINKDRREKKNYEEEDDDDFFLPEEVEPLLTKTALYSDTTAAGISLLFAPRPFN 423
Query: 423 MRSGRMRRAEDIPLVSDWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHL 482
MRSGRMRRAEDIPLVS+WYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHL
Sbjct: 424 MRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHL 483
Query: 483 FRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTT 542
FRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTT
Sbjct: 484 FRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTT 543
Query: 543 KERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLTGMY 602
KERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLTGMY
Sbjct: 544 KERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLTGMY 603
Query: 603 RYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWL 662
RYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWL
Sbjct: 604 RYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWL 663
Query: 663 GNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQH 722
GNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQH
Sbjct: 664 GNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQH 723
Query: 723 LSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVC 782
LSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVC
Sbjct: 724 LSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVC 783
Query: 783 RKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFAPIPFPPLSY 842
RKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKF+PIPFPPLSY
Sbjct: 784 RKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSY 843
Query: 843 KHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFK 902
KHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFK
Sbjct: 844 KHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFK 903
Query: 903 EVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLV 962
EVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLV
Sbjct: 904 EVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLV 963
Query: 963 YKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAK 1022
YKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAK
Sbjct: 964 YKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAK 1023
Query: 1023 NNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPHMPNEFI 1082
NNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPP MPNEFI
Sbjct: 1024 NNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFI 1083
Query: 1083 TYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKK 1142
TYWDTKVETRHPIRLYSRYID+VHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKK
Sbjct: 1084 TYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKK 1143
Query: 1143 CWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGF 1202
CWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGF
Sbjct: 1144 CWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGF 1203
Query: 1203 EVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSS 1262
EVRILPKIRMTQEAFSNTRDGVWNLQNEQTKE TAVAFLRVDDEHMKVFENRVRQILMSS
Sbjct: 1204 EVRILPKIRMTQEAFSNTRDGVWNLQNEQTKELTAVAFLRVDDEHMKVFENRVRQILMSS 1263
Query: 1263 GSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRF 1322
GSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRF
Sbjct: 1264 GSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRF 1323
Query: 1323 PPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRY 1382
PPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRY
Sbjct: 1324 PPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRY 1383
Query: 1383 IQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLA 1442
IQPWESEFIDSQRVWAEYALKRQEAQ+QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLA
Sbjct: 1384 IQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLA 1443
Query: 1443 YDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFK 1502
YDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFK
Sbjct: 1444 YDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFK 1503
Query: 1503 GTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGF 1562
GTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGF
Sbjct: 1504 GTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGF 1563
Query: 1563 QVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQK 1622
QVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQK+HESVVMDLCQVLDQELDALEIETVQK
Sbjct: 1564 QVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVLDQELDALEIETVQK 1623
Query: 1623 ETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDMFDQKASNKYWVDVQLRWGDY 1682
ETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKD+FDQKASNKYW+DVQLRWGDY
Sbjct: 1624 ETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDY 1683
Query: 1683 DSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQAMN 1742
DSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIG+DLAYNLHSAFGNWFPGSKPLLAQAMN
Sbjct: 1684 DSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLAQAMN 1743
Query: 1743 KIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIH 1802
KIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIH
Sbjct: 1744 KIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIH 1803
Query: 1803 KTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRS 1862
KTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRS
Sbjct: 1804 KTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRS 1863
Query: 1863 LPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATE 1922
LPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATE
Sbjct: 1864 LPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATE 1923
Query: 1923 PQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSL 1982
PQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTI+TEPHHIWPSL
Sbjct: 1924 PQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVTEPHHIWPSL 1983
Query: 1983 SDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEK 2042
+DDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEK
Sbjct: 1984 TDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEK 2043
Query: 2043 QAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIY 2102
QAKEASQLTAVTT+TTNVHGDELIVTTTSPYEQ+AFGSKTDWRVRAISATNLYLRVNHIY
Sbjct: 2044 QAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQSAFGSKTDWRVRAISATNLYLRVNHIY 2103
Query: 2103 VNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQW 2162
VNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQW
Sbjct: 2104 VNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQW 2163
Query: 2163 GTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKC 2222
GTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKC
Sbjct: 2164 GTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKC 2223
Query: 2223 IILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFY 2282
IILTCSFTPGSCSLTAYKLTP+GYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFY
Sbjct: 2224 IILTCSFTPGSCSLTAYKLTPTGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFY 2283
Query: 2283 MVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDRE 2342
M+PDNGPWNYNFMGVKHTVSMKYG+KLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDRE
Sbjct: 2284 MIPDNGPWNYNFMGVKHTVSMKYGIKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDRE 2343
Query: 2343 DTFS 2346
DTF+
Sbjct: 2344 DTFT 2347
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436124|ref|XP_004135844.1| PREDICTED: pre-mRNA-processing-splicing factor 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449491045|ref|XP_004158783.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|359482366|ref|XP_003632761.1| PREDICTED: pre-mRNA-processing-splicing factor 8-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224134486|ref|XP_002327417.1| predicted protein [Populus trichocarpa] gi|222835971|gb|EEE74392.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255553223|ref|XP_002517654.1| Pre-mRNA-processing-splicing factor, putative [Ricinus communis] gi|223543286|gb|EEF44818.1| Pre-mRNA-processing-splicing factor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356557237|ref|XP_003546924.1| PREDICTED: pre-mRNA-processing-splicing factor 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356547438|ref|XP_003542119.1| PREDICTED: pre-mRNA-processing-splicing factor 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357455267|ref|XP_003597914.1| Pre-mRNA-processing-splicing factor [Medicago truncatula] gi|355486962|gb|AES68165.1| Pre-mRNA-processing-splicing factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|334184042|ref|NP_178124.2| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gi|5902365|gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gi|332198232|gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2346 | ||||||
| TAIR|locus:2141791 | 2332 | AT4G38780 [Arabidopsis thalian | 0.960 | 0.966 | 0.898 | 0.0 | |
| UNIPROTKB|E1BZT5 | 2335 | PRPF8 "Uncharacterized protein | 0.976 | 0.980 | 0.817 | 0.0 | |
| MGI|MGI:2179381 | 2335 | Prpf8 "pre-mRNA processing fac | 0.976 | 0.980 | 0.816 | 0.0 | |
| UNIPROTKB|G3V6H2 | 2335 | Prpf8 "Pre-mRNA processing fac | 0.976 | 0.980 | 0.816 | 0.0 | |
| UNIPROTKB|A7Z025 | 2335 | PRPF8 "PRPF8 protein" [Bos tau | 0.976 | 0.980 | 0.816 | 0.0 | |
| UNIPROTKB|E2R4X9 | 2335 | PRPF8 "Uncharacterized protein | 0.976 | 0.980 | 0.816 | 0.0 | |
| UNIPROTKB|Q6P2Q9 | 2335 | PRPF8 "Pre-mRNA-processing-spl | 0.976 | 0.980 | 0.816 | 0.0 | |
| ZFIN|ZDB-GENE-030131-577 | 2342 | prpf8 "pre-mRNA processing fac | 0.976 | 0.977 | 0.813 | 0.0 | |
| FB|FBgn0033688 | 2396 | Prp8 "pre-mRNA processing fact | 0.976 | 0.955 | 0.811 | 0.0 | |
| WB|WBGene00004187 | 2329 | prp-8 [Caenorhabditis elegans | 0.975 | 0.982 | 0.789 | 0.0 |
| TAIR|locus:2141791 AT4G38780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 11016 (3882.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 2039/2270 (89%), Positives = 2138/2270 (94%)
Query: 90 RDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVN 149
RDHGDMSSKK+R DKRVYLGALKF+PHAV+KLLENMPMPWEQVRDVKVLYHITGAITFVN
Sbjct: 66 RDHGDMSSKKHRLDKRVYLGALKFVPHAVFKLLENMPMPWEQVRDVKVLYHITGAITFVN 125
Query: 150 EIPWVVEPIYLAQWGTMWIXXXXXXXXXXXXXXXXXXXXXXXXXXLDYADNLLDVDPLEP 209
E+ WVVEPIY+AQWG+MWI LDYADNLLDVDPLE
Sbjct: 126 EVRWVVEPIYMAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEA 185
Query: 210 IQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLID 269
IQLELDEEEDSAVY+WFYDHKPLVKTK+INGPSY+ W+LSLPIM+TLHRLA QLLSDL+D
Sbjct: 186 IQLELDEEEDSAVYSWFYDHKPLVKTKMINGPSYQTWNLSLPIMSTLHRLAAQLLSDLVD 245
Query: 270 RNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTE 329
RNYFYLFDM SFFTAKALNMCIPGGPKFEPL+RDMEKGDEDWNEFNDINKLIIRSPLRTE
Sbjct: 246 RNYFYLFDMPSFFTAKALNMCIPGGPKFEPLHRDMEKGDEDWNEFNDINKLIIRSPLRTE 305
Query: 330 YRIAFPHLYNNRPRKVRLGIYHTPMVMYIKTEDPDLPAFYYDPLIHPIPS---TNKERH- 385
Y++AFPHLYNNRPRKV+L +YHTPMVMYIKTEDPDLPAFYYDPLIHPI + TNKE+
Sbjct: 306 YKVAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDLPAFYYDPLIHPISNSNNTNKEQRK 365
Query: 386 --------DDFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLV 437
DDF LPE +EPLL ++ LYTDTTA GISLLFAPRPFNMRSGR RRAEDIPLV
Sbjct: 366 SNGYDDDGDDFVLPEGLEPLLNNSPLYTDTTAPGISLLFAPRPFNMRSGRTRRAEDIPLV 425
Query: 438 SDWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTEL 497
++W+KEHCPP+YPVKVRVSYQKLLKC++LNELHHRPPKAQKKKHLFRSL ATKFFQ+TEL
Sbjct: 426 AEWFKEHCPPAYPVKVRVSYQKLLKCYLLNELHHRPPKAQKKKHLFRSLAATKFFQSTEL 485
Query: 498 DWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLC 557
DW E GLQVC+QGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLC
Sbjct: 486 DWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLC 545
Query: 558 REILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKD 617
REILRLTKLVVDAN+QFRLGNVDAFQLADGLQY FSHVGQLTGMYRYKYRLMRQIRMCKD
Sbjct: 546 REILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKD 605
Query: 618 LKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKG 677
LKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKG
Sbjct: 606 LKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKG 665
Query: 678 VAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWK 737
VAKTVTKQRVESHFDLELRAAVMHDV+DAMPEGIKQNKARTILQHLSEAWRCWKANIPWK
Sbjct: 666 VAKTVTKQRVESHFDLELRAAVMHDVVDAMPEGIKQNKARTILQHLSEAWRCWKANIPWK 725
Query: 738 VPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAE 797
VPGLPV IENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAE
Sbjct: 726 VPGLPVAIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAE 785
Query: 798 QERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFAPIPFPPLSYKHDTKLLILALERLK 857
QERQHN+ KDGPYVT +E +AIY+TTV+WLESRKF+ IPFPPLSYKHDTKLLILALERLK
Sbjct: 786 QERQHNFQKDGPYVTADEGIAIYSTTVNWLESRKFSAIPFPPLSYKHDTKLLILALERLK 845
Query: 858 ESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIP 917
ESYS AV+LNQ QREELGLIEQAYDNPHEAL RIKRHLLTQ +FKEVGIEFMDLYS+LIP
Sbjct: 846 ESYSAAVKLNQQQREELGLIEQAYDNPHEALMRIKRHLLTQHSFKEVGIEFMDLYSHLIP 905
Query: 918 VYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWD 977
VY+I+PLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWD
Sbjct: 906 VYQIDPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWD 965
Query: 978 TSDGQCVVMLQTKFEKFFEKIDXXXXXXXXXXXXDHNIADYVTAKNNVVLSYKDMSHTNS 1037
TSDGQCVVMLQTKFEK FEKID D +A+YVT KNNVVLSYKDMS+TN+
Sbjct: 966 TSDGQCVVMLQTKFEKLFEKIDLTVLNSLLRLVLDPKLANYVTGKNNVVLSYKDMSYTNT 1025
Query: 1038 YGLIRGLQFASFVVQYYXXXXXXXXXXXTRASEIAGPPHMPNEFITYWDTKVETRHPIRL 1097
YGLIRGLQFASFVVQ+Y TRASEIAGPP PNEF+TYWDTKVETRHPIRL
Sbjct: 1026 YGLIRGLQFASFVVQFYGLVLDLLLLGLTRASEIAGPPQRPNEFMTYWDTKVETRHPIRL 1085
Query: 1098 YSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDV 1157
YSRYIDKVHI+F+FTHEEARDLIQR+LTE PDPNNENMVGYNNKKCWPRDARMRLMKHDV
Sbjct: 1086 YSRYIDKVHIMFKFTHEEARDLIQRHLTERPDPNNENMVGYNNKKCWPRDARMRLMKHDV 1145
Query: 1158 NLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAF 1217
NLGRSVFWDMKNRLPRSITTLEWEN FVSVYSKDNPNLLFSMCGFEVR+LPKIRM QEAF
Sbjct: 1146 NLGRSVFWDMKNRLPRSITTLEWENGFVSVYSKDNPNLLFSMCGFEVRVLPKIRMGQEAF 1205
Query: 1218 SNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTA 1277
S+TRDGVWNLQNEQTKERTAVAFLR DDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTA
Sbjct: 1206 SSTRDGVWNLQNEQTKERTAVAFLRADDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTA 1265
Query: 1278 LIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLG 1337
LIGLMTYFREATVHTQELLDLLVKCENKIQTR+KIGLNSKMPSRFPPVIFYTPKEIGGLG
Sbjct: 1266 LIGLMTYFREATVHTQELLDLLVKCENKIQTRVKIGLNSKMPSRFPPVIFYTPKEIGGLG 1325
Query: 1338 MLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVW 1397
MLSMGHILIPQSDLRYS QTDVGV+HFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVW
Sbjct: 1326 MLSMGHILIPQSDLRYSNQTDVGVSHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVW 1385
Query: 1398 AEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQ 1457
AEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQ
Sbjct: 1386 AEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQ 1445
Query: 1458 VLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKA 1517
LKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKA
Sbjct: 1446 ALKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKA 1505
Query: 1518 SGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKI 1577
SGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI+MHGKI
Sbjct: 1506 SGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIYMHGKI 1565
Query: 1578 PTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSC 1637
PTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQEL+ LEIETVQKETIHPRKSYKMNSSC
Sbjct: 1566 PTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELEPLEIETVQKETIHPRKSYKMNSSC 1625
Query: 1638 ADILLFAAHRWPMSKPSLVAESKDMFDQKASNKYWVDVQLRWGDYDSHDIERYTRAKFMD 1697
AD+LLFAAH+WPMSKPSL+AESKD+FDQKASNKYW+DVQLRWGDYDSHDIERYT+AKFMD
Sbjct: 1626 ADVLLFAAHKWPMSKPSLIAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTKAKFMD 1685
Query: 1698 YTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRER 1757
YTTDNMSIYPSPTGV+IGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRER
Sbjct: 1686 YTTDNMSIYPSPTGVIIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRER 1745
Query: 1758 IRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGA 1817
IRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPING
Sbjct: 1746 IRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGV 1805
Query: 1818 IFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRK 1877
IFIFNPRTGQLFLK+IHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQ+IVTRK
Sbjct: 1806 IFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQVIVTRK 1865
Query: 1878 GMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKS 1937
GMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQM LFNIYDDWL +
Sbjct: 1866 GMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMALFNIYDDWLMT 1925
Query: 1938 ISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDL 1997
+SSYTAF RLILILRALHVNNEKAKMLLKPD +++TEP+HIWPSL+DDQWMKVEVALRDL
Sbjct: 1926 VSSYTAFQRLILILRALHVNNEKAKMLLKPDMSVVTEPNHIWPSLTDDQWMKVEVALRDL 1985
Query: 1998 ILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTKT 2057
ILSDYAKKN VNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTT+T
Sbjct: 1986 ILSDYAKKNKVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTRT 2045
Query: 2058 TNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIM 2117
TNVHGDELI TT SPYEQ+AFGSKTDWRVRAISATNLYLRVNHIYVNS+DIKETGYTYIM
Sbjct: 2046 TNVHGDELISTTISPYEQSAFGSKTDWRVRAISATNLYLRVNHIYVNSDDIKETGYTYIM 2105
Query: 2118 PKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEH 2177
PKNILKKFICIADLRTQI+GYLYGISPPDNPQVKEIRC+ M PQ G HQQV LPS+LPEH
Sbjct: 2106 PKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCVVMVPQCGNHQQVQLPSSLPEH 2165
Query: 2178 DFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLT 2237
FL+DLEPLGW+HTQPNELPQLSPQD+T H R+LENNKQWD EKCIILTCSFTPGSCSLT
Sbjct: 2166 QFLDDLEPLGWIHTQPNELPQLSPQDVTFHTRVLENNKQWDAEKCIILTCSFTPGSCSLT 2225
Query: 2238 AYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGV 2297
+YKLT +GYEWGR+NKDTGSNPHGYLPTHYEKVQMLLSDRF GFYMVP+NGPWNYNFMG
Sbjct: 2226 SYKLTQAGYEWGRLNKDTGSNPHGYLPTHYEKVQMLLSDRFFGFYMVPENGPWNYNFMGA 2285
Query: 2298 KHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEE-GEMAEGDREDTFS 2346
HTVS+ Y + LGTP+EYYH+ HRPTHFL+FS +EE G++ DR+D+F+
Sbjct: 2286 NHTVSINYSLTLGTPKEYYHQVHRPTHFLQFSKMEEDGDL---DRDDSFA 2332
|
|
| UNIPROTKB|E1BZT5 PRPF8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2179381 Prpf8 "pre-mRNA processing factor 8" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3V6H2 Prpf8 "Pre-mRNA processing factor 8, isoform CRA_a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A7Z025 PRPF8 "PRPF8 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R4X9 PRPF8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6P2Q9 PRPF8 "Pre-mRNA-processing-splicing factor 8" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-577 prpf8 "pre-mRNA processing factor 8" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0033688 Prp8 "pre-mRNA processing factor 8" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00004187 prp-8 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8T295 | PRP8_DICDI | No assigned EC number | 0.7651 | 0.9757 | 0.9836 | yes | no |
| Q6P2Q9 | PRP8_HUMAN | No assigned EC number | 0.8244 | 0.9906 | 0.9952 | yes | no |
| O14187 | SPP42_SCHPO | No assigned EC number | 0.7315 | 0.9786 | 0.9716 | yes | no |
| P34369 | PRP8_CAEEL | No assigned EC number | 0.8077 | 0.9799 | 0.9871 | yes | no |
| Q99PV0 | PRP8_MOUSE | No assigned EC number | 0.8244 | 0.9906 | 0.9952 | yes | no |
| P33334 | PRP8_YEAST | No assigned EC number | 0.6157 | 0.9748 | 0.9477 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.17.n1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2346 | |||
| COG5178 | 2365 | COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p | 0.0 | |
| pfam08083 | 408 | pfam08083, PROCN, PROCN (NUC071) domain | 0.0 | |
| cd08056 | 252 | cd08056, MPN_PRP8, Mpr1p, Pad1p N-terminal (MPN) d | 1e-164 | |
| pfam12134 | 231 | pfam12134, PRP8_domainIV, PRP8 domain IV core | 1e-157 | |
| pfam10596 | 160 | pfam10596, U6-snRNA_bdg, U6-snRNA interacting doma | 1e-108 | |
| pfam08082 | 152 | pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-termina | 1e-106 | |
| pfam10597 | 136 | pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 | 1e-89 | |
| pfam08084 | 110 | pfam08084, PROCT, PROCT (NUC072) domain | 2e-60 | |
| pfam10598 | 94 | pfam10598, RRM_4, RNA recognition motif of the spl | 1e-53 | |
| smart00232 | 135 | smart00232, JAB_MPN, JAB/MPN domain | 5e-22 | |
| cd07767 | 116 | cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domain | 4e-20 | |
| pfam01398 | 117 | pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro | 4e-12 |
| >gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 3429 bits (8893), Expect = 0.0
Identities = 1441/2369 (60%), Positives = 1694/2369 (71%), Gaps = 41/2369 (1%)
Query: 9 GGPPLAPPGTSGAVPI-PPPPSQPSYTVLTT---TPS-PQEAEARLEEKARKW-MQLNSK 62
G PP PP P PPPP P V S + +
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGVNVKKRSRKQLSIVGDILGHSGNPIYSLRVSDKPV 66
Query: 63 RYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLL 122
+ G+K K V K +PPEH+RKI DM S + DKR YLGALK++PHAV KLL
Sbjct: 67 KLGNKAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVDKRSYLGALKYLPHAVLKLL 126
Query: 123 ENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKR 182
ENMP PWE V +VKVLYH GAITFVNE+P V+EP AQWG W MRREKRDR FKR
Sbjct: 127 ENMPSPWEDVSEVKVLYHCHGAITFVNEVPRVIEPQLFAQWGLCWSPMRREKRDRYSFKR 186
Query: 183 MRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPS 242
RFPPFDD EPPL + +L V+PL PI + LD +D V W Y + L +NG
Sbjct: 187 KRFPPFDDLEPPLSKSQWVLGVEPLMPINIRLDRMDDEHVRDWVYTSRDLEDHPSVNGAM 246
Query: 243 YRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYR 302
YR+W LP M L RL L + D NY YLF SFF AKALN+ IPGGPKFEPLY
Sbjct: 247 YRRWKYMLPAMHNLLRLMPMLWESIRDVNYVYLFSGLSFFVAKALNVAIPGGPKFEPLYS 306
Query: 303 DMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVRLGIYHTPMVMYIKT-E 361
ED NEFN I ++I R P+ EY +AFP LYN+RPR V + Y +P + E
Sbjct: 307 RESAEFEDENEFNGIVRIIRRPPIDDEYPVAFPGLYNSRPRSVAVECYGSPECRDVFLDE 366
Query: 362 DPDLPAFYYDPLIHPIPSTNKERHD----------------DFFLPEQVEPLLKDTQLYT 405
D D PA + DPLI+PI + H F P P L +
Sbjct: 367 DEDYPANFKDPLINPILGVQLDNHPYDGKGSNEESCVMERKLFSEPI-FYPYLYNESTEV 425
Query: 406 DTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSDWYKEHCPPSYPVKVRVSYQKLLKCFV 465
TT LL P PFN GR RA+D+PL W HC PVKV VSYQKLLK +V
Sbjct: 426 RTTERAHLLLKNPFPFNKGKGRAERAQDVPLDKPWLLGHCLQERPVKVPVSYQKLLKNYV 485
Query: 466 LNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNY 525
N LH P+ HL + L+ TK+FQ TE+DW EAGLQ+C+QG+NML+LLIHRK L Y
Sbjct: 486 RNMLHKTRPRPHTNTHLLKELKNTKYFQRTEIDWVEAGLQLCRQGHNMLSLLIHRKGLTY 545
Query: 526 LHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLA 585
LHLDYNFNLKP KTLTTKERKKSR GN+FHL RE+L+ KL+VD ++QFRLGN+DA+QLA
Sbjct: 546 LHLDYNFNLKPTKTLTTKERKKSRVGNSFHLMREMLKFIKLIVDIHVQFRLGNIDAYQLA 605
Query: 586 DGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWR 645
DG+ Y +HVGQLTG+YRYKY+LM+QIR CKD KHLIYY FN G VGKGPGCGFW P WR
Sbjct: 606 DGVHYILNHVGQLTGIYRYKYKLMKQIRACKDWKHLIYYAFNEG-VGKGPGCGFWGPQWR 664
Query: 646 VWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLD 705
VWLFFLRG +PLLER++GNL+ RQFEGR S K +TKQR +S +DLELR VM D+L
Sbjct: 665 VWLFFLRGHIPLLERYIGNLVTRQFEGR-SDYNPKPLTKQRSDSGYDLELRRQVMADILS 723
Query: 706 AMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAH 765
+PEGI+Q K RTILQHLSEAWRCWKANIPW VPG P PI +I RY+KSKAD WT+ AH
Sbjct: 724 MLPEGIRQTKVRTILQHLSEAWRCWKANIPWHVPGEPAPILEVIRRYIKSKADLWTSSAH 783
Query: 766 YNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVH 825
+NRERI RGA V KT +KNLGRLTRLW+K EQERQ + K GP T EEA I TV
Sbjct: 784 FNRERISRGAGVGKTKEKKNLGRLTRLWVKLEQERQVDSAKVGPKSTKEEAKRIGKITVL 843
Query: 826 WLESRKFAPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPH 885
WLESR F PIPFPPL YK DTK+L+LALE LK Y+ +RLN+ REEL L+E+AYDNPH
Sbjct: 844 WLESRMFEPIPFPPLRYKEDTKILVLALEYLKSKYTGKIRLNESTREELALLEKAYDNPH 903
Query: 886 EALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHL 945
+ L RIK+ LLTQR+FKEVGI M Y IPVY ++P+EKI DAYLDQYLWYE D+R+L
Sbjct: 904 DTLFRIKKSLLTQRSFKEVGITLMRHYDGAIPVYSVDPVEKIVDAYLDQYLWYEADRRNL 963
Query: 946 FPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNR 1005
FP WIKP+DSE PPLLVYKWCQGINNL+ WDTS+G+ +V+ +TK E EK+D T+LNR
Sbjct: 964 FPEWIKPSDSEMPPLLVYKWCQGINNLKAAWDTSNGERLVLYETKLEGIMEKVDNTLLNR 1023
Query: 1006 LLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGL 1065
LL+LVLD N+ADY+ AKNNVV+ YKDMSHTN YGLIRGLQF+SF+ Q+YGLV+DLL+LGL
Sbjct: 1024 LLKLVLDPNLADYIIAKNNVVVVYKDMSHTNHYGLIRGLQFSSFIYQFYGLVVDLLVLGL 1083
Query: 1066 TRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLT 1125
RA+EIAGP PN F+ + ET HPIRLY+RY+D ++I+FRF +E L++ YL
Sbjct: 1084 QRATEIAGPADAPNVFMDFKSRATETSHPIRLYTRYMDDIYIVFRFQRKEEDSLLEDYLR 1143
Query: 1126 EHPDPNNENMVGYNN--KKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENS 1183
E+PDP N Y N K CWP D RMRL DVNLGR+VFW++ R P S+T WE S
Sbjct: 1144 ENPDPEEANNERYRNYFKGCWPDDCRMRLGPLDVNLGRAVFWEILRRCPHSLTATRWEPS 1203
Query: 1184 FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRV 1243
F SVYSK NPNLLFSM GFEVRILPKIR +E S GVW L + +TK+RTA A L V
Sbjct: 1204 FGSVYSKINPNLLFSMVGFEVRILPKIRKIEE-RSL-SSGVWRLGDGRTKQRTAHANLAV 1261
Query: 1244 DDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCE 1303
+ +++FE+R+R ILM+SGSTTFTK+ KWNT LI L+TY+REA T+ LLD LVK E
Sbjct: 1262 SEGGIEMFESRIRHILMTSGSTTFTKVATKWNTQLIALVTYYREAICDTKGLLDKLVKAE 1321
Query: 1304 NKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTH 1363
IQ R+K GLNSKMP RFPP +FY PKE+GGLGMLS+GHILIP SDL +S+QTD G+TH
Sbjct: 1322 RLIQNRVKKGLNSKMPVRFPPAVFYAPKELGGLGMLSVGHILIPHSDLEWSKQTDTGITH 1381
Query: 1364 FRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSW 1423
FRSGM+ ++LIP RYI WE EF DSQRVWAEYA KRQEA QNRRLTLEDLE SW
Sbjct: 1382 FRSGMTTNGERLIPAAMRYISRWEYEFEDSQRVWAEYARKRQEAGQQNRRLTLEDLEMSW 1441
Query: 1424 DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT 1483
DRGIPRI+TLFQ+DRHTLAYD+G+R+R++FKQY + NPFWWT +HDGKLW+LN YR
Sbjct: 1442 DRGIPRISTLFQRDRHTLAYDRGFRMRSEFKQYSLKPNNPFWWTDAKHDGKLWSLNRYRL 1501
Query: 1484 DVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR 1543
DVIQALGGVEGILEHTLFK T F +WEGLFWEKASGFEESMK+KKLTNAQR GL+QIPNR
Sbjct: 1502 DVIQALGGVEGILEHTLFKATGFRSWEGLFWEKASGFEESMKFKKLTNAQRMGLSQIPNR 1561
Query: 1544 RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMD 1603
RFTLWWSPTINRANVYVGFQVQLDLTGI MHGKIPTLKISLIQIFR HLWQKIHESVV D
Sbjct: 1562 RFTLWWSPTINRANVYVGFQVQLDLTGILMHGKIPTLKISLIQIFRNHLWQKIHESVVGD 1621
Query: 1604 LCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDMF 1663
LCQVLD+ELD L+IETVQKET+HPRKSYKMNSSCADILL A+ W +S PSL+ E +D
Sbjct: 1622 LCQVLDKELDVLQIETVQKETVHPRKSYKMNSSCADILLSGAYDWCVSSPSLLLEERDGG 1681
Query: 1664 DQKASNKYWVDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLH 1723
+NK W+DVQLRWGDYDSHDI RY RAKF+DYTTD S+YPSPTGV+IG+DL YN+
Sbjct: 1682 SNVRTNKLWIDVQLRWGDYDSHDIHRYARAKFLDYTTDPQSMYPSPTGVVIGIDLCYNMW 1741
Query: 1724 SAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF 1783
SA+GNW G KPL+ +M +IMK+NPALYVLRERIRKGLQLY+SEP E YLSS NY E+F
Sbjct: 1742 SAYGNWNEGLKPLIQSSMERIMKANPALYVLRERIRKGLQLYTSEPQEQYLSSSNYAELF 1801
Query: 1784 SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR 1843
SN I FVDDTNVYRVT+HKTFEGNLTTKPINGAIF+ NP TG LFLKVIHTSVWAGQKR
Sbjct: 1802 SNSIDLFVDDTNVYRVTLHKTFEGNLTTKPINGAIFVLNPATGNLFLKVIHTSVWAGQKR 1861
Query: 1844 LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP 1903
L QLAKWKTAEEV AL RSLPVEEQPKQIIVTRK MLDPLEVH+LDFPNI I+ EL LP
Sbjct: 1862 LIQLAKWKTAEEVFALGRSLPVEEQPKQIIVTRKSMLDPLEVHILDFPNISIRTCELALP 1921
Query: 1904 FQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKM 1963
F A + I+K DLIL+ATEPQMVLFN+YDDWL+ SSYTAFSRL+L+LRAL VN E+ K
Sbjct: 1922 FSAVMGIDKIRDLILRATEPQMVLFNLYDDWLQETSSYTAFSRLLLVLRALDVNEERVKE 1981
Query: 1964 LLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIIL 2023
+L+PDK+IIT+ +H+WP SD QW+K E+ LRDLIL Y K+N+N S LTQSE+RDIIL
Sbjct: 1982 ILRPDKSIITKINHLWPGFSDSQWIKKEIQLRDLILDRYCSKHNINPSGLTQSEVRDIIL 2041
Query: 2024 GAEITPPSQQRQQIAEIEKQAKE--ASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSK 2081
G I+ PS RQ+ AE EKQ E S+ T V+TKT N G E +V YE F SK
Sbjct: 2042 GFRISAPSGARQETAETEKQNSEKALSRPTNVSTKTINGWGREYVVLDGMIYEGEKFSSK 2101
Query: 2082 TDWRVRAISATNLYLRVNHIYVNSEDIKETG-YTYIMPKNILKKFICIADLRTQISGYLY 2140
+WR AI L LR +IYV +++ +E+ Y +P N+L+KF+ I+D Q++G +Y
Sbjct: 2102 EEWRSEAIRTGPLELRTKNIYVTADENEESIQQMYRLPLNLLEKFMRISDPHVQVAGLVY 2161
Query: 2141 GISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDF--LNDLEPLGWMHTQPNELPQ 2198
G S DNPQ+KEI + PQ G+ V S +P HD DLE LGW+HTQ +ELP
Sbjct: 2162 GKSGSDNPQIKEILSFGLVPQLGSLSGVQSSSFVP-HDLPGDEDLEILGWIHTQDDELPY 2220
Query: 2199 LSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSN 2258
L + +H + + + +WD + LT S+ PGS SL AY + G WG N D S+
Sbjct: 2221 LEVAGVLTHRKKI-VDPEWD---AVTLTVSYLPGSISLRAYVVKKEGCNWGSKNMDINSD 2276
Query: 2259 -PHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYH 2317
G P + Q+LLSDR G + VP+ WNYNF G ++Y K+G P +Y
Sbjct: 2277 EAIGVEPVLGKDCQLLLSDRIQGVFYVPEEEVWNYNFAGPFFDDRLEYTWKIGMPLGFYD 2336
Query: 2318 EDHRPTHFLEFSNLEEGEMAEGDREDTFS 2346
HRP HF F L G E +ED F+
Sbjct: 2337 GFHRPGHFSRFYELRAGGRLEEWQEDAFA 2365
|
Length = 2365 |
| >gnl|CDD|116688 pfam08083, PROCN, PROCN (NUC071) domain | Back alignment and domain information |
|---|
| >gnl|CDD|163687 cd08056, MPN_PRP8, Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 | Back alignment and domain information |
|---|
| >gnl|CDD|152569 pfam12134, PRP8_domainIV, PRP8 domain IV core | Back alignment and domain information |
|---|
| >gnl|CDD|151125 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8 | Back alignment and domain information |
|---|
| >gnl|CDD|149261 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|119117 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of PrP8 | Back alignment and domain information |
|---|
| >gnl|CDD|219717 pfam08084, PROCT, PROCT (NUC072) domain | Back alignment and domain information |
|---|
| >gnl|CDD|192639 pfam10598, RRM_4, RNA recognition motif of the spliceosomal PrP8 | Back alignment and domain information |
|---|
| >gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain | Back alignment and domain information |
|---|
| >gnl|CDD|163686 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domains | Back alignment and domain information |
|---|
| >gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2346 | |||
| KOG1795 | 2321 | consensus U5 snRNP spliceosome subunit [RNA proces | 100.0 | |
| COG5178 | 2365 | PRP8 U5 snRNP spliceosome subunit [RNA processing | 100.0 | |
| PF08083 | 408 | PROCN: PROCN (NUC071) domain; InterPro: IPR012592 | 100.0 | |
| PF12134 | 231 | PRP8_domainIV: PRP8 domain IV core; InterPro: IPR0 | 100.0 | |
| cd08056 | 252 | MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains wit | 100.0 | |
| PF10596 | 160 | U6-snRNA_bdg: U6-snRNA interacting domain of PrP8; | 100.0 | |
| PF08082 | 152 | PRO8NT: PRO8NT (NUC069), PrP8 N-terminal domain; I | 100.0 | |
| PF10597 | 135 | U5_2-snRNA_bdg: U5-snRNA binding site 2 of PrP8; I | 100.0 | |
| PF08084 | 125 | PROCT: PROCT (NUC072) domain; InterPro: IPR012984 | 100.0 | |
| PF10598 | 93 | RRM_4: RNA recognition motif of the spliceosomal P | 100.0 | |
| cd08066 | 173 | MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ | 99.92 | |
| COG5178 | 2365 | PRP8 U5 snRNP spliceosome subunit [RNA processing | 99.77 | |
| KOG2880 | 424 | consensus SMAD6 interacting protein AMSH, contains | 99.61 | |
| cd07767 | 116 | MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al | 99.02 | |
| smart00232 | 135 | JAB_MPN JAB/MPN domain. Domain in Jun kinase activ | 98.87 | |
| cd08069 | 268 | MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal | 98.34 | |
| cd08061 | 274 | MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein l | 98.29 | |
| KOG1795 | 2321 | consensus U5 snRNP spliceosome subunit [RNA proces | 98.15 | |
| PF01398 | 114 | JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte | 98.11 | |
| cd08067 | 187 | MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu | 97.99 | |
| PF05021 | 306 | NPL4: NPL4 family; InterPro: IPR007717 The HRD4 ge | 97.8 | |
| cd08058 | 119 | MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w | 97.78 | |
| cd08068 | 244 | MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun | 97.1 | |
| cd01709 | 346 | RT_like_1 RT_like_1: A subfamily of reverse transc | 96.92 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 96.29 | |
| cd08065 | 266 | MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi | 96.25 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 95.97 | |
| cd08070 | 128 | MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit | 95.88 | |
| cd01651 | 226 | RT_G2_intron RT_G2_intron: Reverse transcriptases | 95.65 | |
| KOG2834 | 510 | consensus Nuclear pore complex, rNpl4 component (s | 95.3 | |
| cd03487 | 214 | RT_Bac_retron_II RT_Bac_retron_II: Reverse transcr | 94.96 | |
| cd08057 | 157 | MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai | 93.6 | |
| cd01646 | 158 | RT_Bac_retron_I RT_Bac_retron_I: Reverse transcrip | 92.48 | |
| COG1310 | 134 | Predicted metal-dependent protease of the PAD1/JAB | 91.54 | |
| cd01650 | 220 | RT_nLTR_like RT_nLTR: Non-LTR (long terminal repea | 91.02 | |
| cd08064 | 265 | MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi | 90.43 | |
| cd08072 | 117 | MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1 | 88.17 | |
| KOG2675 | 480 | consensus Adenylate cyclase-associated protein (CA | 87.86 | |
| PF00078 | 214 | RVT_1: Reverse transcriptase (RNA-dependent DNA po | 84.17 | |
| cd08063 | 288 | MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit | 81.61 |
| >KOG1795 consensus U5 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=8659.81 Aligned_cols=2285 Identities=88% Similarity=1.427 Sum_probs=2269.2
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccCCChHHHHhhhcccCCCCccccccccccccccccccHHHHHHHhhcC
Q 042625 46 EARLEEKARKWMQLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENM 125 (2346)
Q Consensus 46 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~k~~mppehlrkii~~~~dms~~~~~~dkr~~lgaLky~PhAi~klLenm 125 (2346)
+.+|++|+++|.++|.|||++|+|+|+|.++|++||||||||||+ |+|+||++|||+|+||||||||||+||||||
T Consensus 26 ~~~L~~ka~k~~~~~~kr~~~k~k~~~v~t~k~~mPpeHlrkii~----m~S~k~r~dkrv~lgalky~PhaVlkLLeNm 101 (2321)
T KOG1795|consen 26 EYKLEEKARKWMQLNSKRYGEKRKFGFVDTQKEDMPPEHLRKIIR----MTSRKYRHDKRVYLGALKYMPHAVLKLLENM 101 (2321)
T ss_pred HHHhhhhhHHHHHhhhhhhhhhhhcccccccccCCCHHHHHHHhh----hhccccchhhHHhhhhhhhchHHHHHHHhcC
Confidence 567999999999999999999999999999999999999999996 9999999999999999999999999999999
Q ss_pred CCCccccceeeEEEeeeceEEeeccccccchhHHHHHHHHHHHHhhHhhhccccccccccCCCCCCCCCCCccccCCCCC
Q 042625 126 PMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVD 205 (2346)
Q Consensus 126 PmPWE~vr~V~VLYHitGAITFVnEiPrViEpvy~AQW~tmWi~MRrEKrdRrhFKRmrfPpFDDeEPpldy~dnI~dve 205 (2346)
||||||+|+|+||||+|||||||||+||||||+|+||||+||||||||||||+||||||||||||||||+||.||++|||
T Consensus 102 P~pWeqvr~vkvlyh~tGaitfvne~p~viep~y~aqwg~~wi~mrrekRdR~hFkrmrfppfddeeppl~y~~~v~~ve 181 (2321)
T KOG1795|consen 102 PMPWEQVRDVKVLYHITGAITFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVE 181 (2321)
T ss_pred CCcHHhhheeeEEEeccceEEEEecCcccccchhhhhhhhhHHHHHHHHhhhhhhhhccCCCCcccCCcchHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCccccccccccccCCCCCccccccCCCcccceecChHHHHHHHHHhhhhccccccCCcccccccccccccc
Q 042625 206 PLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAK 285 (2346)
Q Consensus 206 pleaIq~~Ld~~~d~~v~dWfYd~kpL~~~~~vng~syk~w~l~l~~m~~Lyrl~~~Llsd~~d~ny~yLFd~ksFfTaK 285 (2346)
||+|||++||+|||.+|.+||||++||++++.|||++||+|.+++|+|++|||||.||++|+.|+|||||||.+||||||
T Consensus 182 Ple~i~~~ld~e~d~~v~~w~yd~~pl~~~~~vng~tyr~w~~slP~m~~l~Rl~~~l~~d~~d~ny~ylfd~~sff~~K 261 (2321)
T KOG1795|consen 182 PLEAIQLELDPEEDRAVVDWFYDHKPLVDTKRVNGPTYRKWNLSLPMMSTLYRLANQLLSDLVDDNYFYLFDMKSFFTAK 261 (2321)
T ss_pred CcchhccCCChHHhhHHHHHHhhcCchhhccccCcHHHHhHhhcCccHHHHHHHHHHHHHHhcccceEEEecchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccccccccccCCcCCccccccccceeeccCCccceeecCCccccCCCcceeeecccccceeeeccCCCCC
Q 042625 286 ALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVRLGIYHTPMVMYIKTEDPDL 365 (2346)
Q Consensus 286 alN~aIPgGPKFEpL~~~~~~~d~d~~efn~i~~ii~r~~irteykiafP~lYns~~r~v~~~~yh~p~~~~~~~~d~~~ 365 (2346)
|||+||||||||||||+|.... ||||||||||++|+|.||||||+|||||||||+||+|.+++||.|..||+++||||+
T Consensus 262 aln~aipggpkfEpl~~~~~~~-ed~neFndi~kvi~r~pirteyriafP~lyn~~~~~v~~~~y~~p~~~yi~~ed~dl 340 (2321)
T KOG1795|consen 262 ALNMAIPGGPKFEPLYRDLERG-EDWNEFNDINKVIIRGPIRTEYRIAFPHLYNNRPRSVCLSVYHTPDVVYIKTEDPDL 340 (2321)
T ss_pred HHhccCCCCCCccccccccccc-ccccccccccceeEecccceeeecccchhhcCCCcceeeeeecCCceEEecCCCCCc
Confidence 9999999999999999999544 999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCcCCCCCCCCCC-----------CCCcccCCcccccCcCCCCCCCccccchhhcccCCCcccccCCCccccccc
Q 042625 366 PAFYYDPLIHPIPSTNKE-----------RHDDFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDI 434 (2346)
Q Consensus 366 p~f~~~~~~npi~~~~~~-----------~~~~~~lp~~~~pfl~~~~l~~~~t~~~~~l~~ap~pfn~r~g~~~ra~dv 434 (2346)
|||||||++|||..++.+ ++++|.+|+++.|++++++|++++|++|++|+|||.|||+|+|+++||+||
T Consensus 341 pa~~~dplinpi~~~~~~~e~~~~~~~~~~~ed~~lp~~~~p~~~~~~l~~~~t~n~~~l~~ap~pfn~~~gr~rra~Dv 420 (2321)
T KOG1795|consen 341 PAFYFDPLINPISHRNTNNEEVEVLEDDDEEEDFALPEDVEPLLEDTPLYTDNTANGISLLWAPRPFNRRSGRTRRAQDI 420 (2321)
T ss_pred hhhhcCcccCccccccccccccccCccccccccccCcccccchhcccccccccchhhHHhhcCCCCCccccccccccccc
Confidence 999999999999876441 346799999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCCCCCceehhhHhhhhhHHHhhhcCCCCCCcchhHHHHHHhccCcceEEechhHHHHHHHHHHhhhhHh
Q 042625 435 PLVSDWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNML 514 (2346)
Q Consensus 435 pl~k~w~~~~~~~~~p~kvrvSyqkLLK~yv~n~l~~~~~~~~~k~~llk~lk~tkfFq~t~iDWvEaglqvcrQG~nML 514 (2346)
||+|+||+||||+++||||||||||||||||+|+||++++|+++|++|||+||+|||||+|+||||||||||||||||||
T Consensus 421 pL~k~w~leh~~~~~PvkvrvsyqkLLk~yvlN~l~~~~pk~~~~~~llrslknTkfFQ~T~iDWVEaGLQvcrQG~nML 500 (2321)
T KOG1795|consen 421 PLVKGWYLEHCPPGYPVKVRVSYQKLLKNYVLNELHHRPPKAQKKRHLLRSLKNTKFFQSTEIDWVEAGLQVCRQGYNML 500 (2321)
T ss_pred hHHHHHHHhcCCCCCCeeeeehHHHHHHHHHHhhhccCCCCCCCchhHHHHhhhcchhhhccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeeccccCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhhhhhccCCCchHHHhhhhhHHhhc
Q 042625 515 NLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSH 594 (2346)
Q Consensus 515 nlLIhRK~L~yLhLDyNFNLKp~KtLTTKERKKSRfGnaFHL~REilr~~KliVD~Hvq~RlGniDa~qLadgl~yiF~h 594 (2346)
|||||||||+|||||||||||||||||||||||||||||||||||||||+|+|||+||||||||||||||||||||||||
T Consensus 501 nllihRK~L~YLhLDyNfNLKP~ktLTTKERKKSR~GnafHL~REiLrl~KliVD~hVqfRlgnvDa~qLadgl~yi~nh 580 (2321)
T KOG1795|consen 501 NLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDSHVQFRLGNVDAFQLADGLQYIFNH 580 (2321)
T ss_pred HHHHHhcCCceEEeecccCcccchhhhhhhhhhhccccHHHHHHHHHHHHHHHhhhhheeeccCchHHHHhcchhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeehhhHHHHHHHhhhccchhhhccccCCCCCCCCccccccchhHHHHHHHhchhHHHHHHHhhhhHHhhhccc
Q 042625 595 VGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRH 674 (2346)
Q Consensus 595 vG~LTGiYRYKYk~m~QIr~cKdlKhliyyrfn~g~vgKgpG~gfW~P~WRVW~FFlRGiiPLLeRwL~nLlaRqfeGR~ 674 (2346)
|||||||||||||+|||||||||||||||||||+| ||||||||||+|+|||||||||||||||||||||||+||||||+
T Consensus 581 VGqLTGmYRYKYklMrQIr~CKdlKhliyYrfn~g-vgkgpgcgfW~p~WRvWlfflRG~iPLLeR~lgnLl~RqfEGR~ 659 (2321)
T KOG1795|consen 581 VGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTG-VGKGPGCGFWAPGWRVWLFFLRGIIPLLERWLGNLLARQFEGRH 659 (2321)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhHHHHHhhhhccC-CCCCCCccccchhHHHHHHHHhcchHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccccchhHHHHHHHHHHHHHhcccccchhhHHHHHHHhHHHHhhhhcCCCccCCCCChhHHHHHHHHHH
Q 042625 675 SKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVK 754 (2346)
Q Consensus 675 s~~~~K~vTKQRveS~~Dlelra~vm~dIldm~pe~i~~~k~r~iLqHlsEAWRCWKAnipwkvpgmp~pi~~iI~rYVK 754 (2346)
++ ++|++|||||||||||||||||||||+|||||||||+||||||||||||||||||||||||||||.||||||+||||
T Consensus 660 ~~-v~Kt~tKQR~es~~DleLr~~vM~dildmmpe~i~q~kartiLQHlsEAWRCWKANiPw~vpglp~pien~ilRyvk 738 (2321)
T KOG1795|consen 660 SK-VAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILRYVK 738 (2321)
T ss_pred cc-ccchhhhhhhhccccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHhhcCCCccCCCCcccHHHHHHHHHh
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceehhhhhhhHhhhccCCeechhhhhhcchhhhHHHHHHHHHHHHhhhcCCCCcChhhHHHHHHHHHHHHhcCCCcc
Q 042625 755 SKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFAP 834 (2346)
Q Consensus 755 ~KAdww~~~a~ynReRI~rg~tVdKtv~kKNlGRlTRL~lK~EqeRQ~~ylk~gpyls~eeavaIy~~~v~WLesr~f~~ 834 (2346)
+||||||++||||||||+||||||||+||||||||||||+|+||||||+|+|||||+|+|||+|||++||||||||.|+|
T Consensus 739 skad~wt~~ahynrErirRgA~Vdkt~~kknLgRltrl~lk~eqErq~n~~k~Gp~it~eEa~~i~t~tv~wlesR~f~p 818 (2321)
T KOG1795|consen 739 SKADWWTNSAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSP 818 (2321)
T ss_pred hhhhheeccchhhHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCHHHhhHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccchhHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHhcChHHHHHHHHHHHhhccccccceeeeeccccc
Q 042625 835 IPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSY 914 (2346)
Q Consensus 835 IpFP~~~yK~DtKlL~LALe~Lke~y~~~~rLn~~qrEEl~lIE~AydnphetL~rIK~~LLtqR~FKeV~ie~~d~ys~ 914 (2346)
|||||++||||||||+||||+|||+|+++.||||+||||+||||||||||||||+||||+|||||+||||||||||+|+|
T Consensus 819 ipfPpLsyk~dtklliLalE~lke~ys~k~rlnqsqrEEl~lieqAydnphe~l~rIKr~LLTqR~FKeVgi~~md~y~~ 898 (2321)
T KOG1795|consen 819 IPFPPLSYKHDTKLLILALERLKEAYSVKVRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRSFKEVGIEFMDLYSH 898 (2321)
T ss_pred CCCCCCCcccchhHHHHHHHHHHhhccccccCChHHHHHHHHHHHHhhCHHHHHHHHHHHHHhhhhhhhhCeeHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccchhhHHHHHHHHhhhhcccCCCCCCCCCCCCCCCChhHHHhhhcccccccCcccCCCCeeEEEEeehhHHH
Q 042625 915 LIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKF 994 (2346)
Q Consensus 915 l~PvY~v~plEKitDayLdqYLwYEadkr~LFP~wiKPsD~E~pPllvyKwcqgInnl~~~w~~s~ge~~vl~et~l~~~ 994 (2346)
+||||+|+|+|||||||||||||||||+|+|||+||||||+||||+|||||||||||++++||+++|||+|||||+|+++
T Consensus 899 lipvY~v~plEkitDAyLdqYLwyEaD~r~lFP~wiKP~DsE~ppll~ykwcqgInnl~~vwd~~~ge~~Vl~etk~e~i 978 (2321)
T KOG1795|consen 899 LIPVYSVEPLEKITDAYLDQYLWYEADKRHLFPNWIKPSDSEPPPLLVYKWCQGINNLQDVWDTSEGECNVLLETKFEKI 978 (2321)
T ss_pred ceeeeeccHHHHHHHHHHHHHHhhhccccccCccccCcccCCCCcchHHHHHhhhchHHHHhhcCCceeEeeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHHhcchhhhhhhhcCceEEEeeccccccccccccccchhHHHHHHHHHHHHHHHhcccccccccCC
Q 042625 995 FEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGP 1074 (2346)
Q Consensus 995 ~ekiD~tlLnrLLrli~D~nladYitsKnNv~i~yKDM~~~N~~GlirGlqFssFv~q~y~lilDLliLG~~ra~e~ag~ 1074 (2346)
|||||+||||||||||+||||||||||||||+|+||||+|||+|||||||||||||+||||||+|||+||++||+|+|||
T Consensus 979 ~ekiD~tLLnrLlrLv~D~niAdYitakNNvvi~yKDM~htN~yG~IrGLqfsSFi~qfYglvlDLlvLG~~ra~e~agp 1058 (2321)
T KOG1795|consen 979 FEKIDLTLLNRLLRLVLDPNIADYITAKNNVVINYKDMSHTNSYGLIRGLQFASFIVQFYGLVLDLLVLGLTRASEIAGP 1058 (2321)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHhhccceEEEeeccccccchhheehhhHHHHHHHHHHHHHHHHHhcchhhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeccccccccCcceEEEeecceEEEEEecChHHHHHHHHHhhhcCCCCCCCcccccCCcccCcchhhhhccc
Q 042625 1075 PHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMK 1154 (2346)
Q Consensus 1075 ~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki~ilfrf~~~E~~~Li~~yL~e~pdpnnen~vgYnn~~cwprd~rmrl~~ 1154 (2346)
|++||+||+|+|+.+|++||||+||||||+|||+|||+++|+++|+||||+|||||||||++||||++|||||||||||+
T Consensus 1059 ~~~pn~f~~f~d~~~e~~hpIrlY~RyiD~iyi~Frf~~~E~~dLiq~yl~E~pdpn~en~v~ynnkkcWprdarmrl~k 1138 (2321)
T KOG1795|consen 1059 PQMPNEFLTFQDVATETAHPIRLYCRYIDRIYIMFRFTAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMK 1138 (2321)
T ss_pred CCCcchhhhhhhhhhhccCceeeeeeecceEEEEEEechhhHHHHHHHHhhcCCCcchhhhccccccCCCcchhHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhccCCccceeeeecCceEEEEeccCCceeEeecceeEEeeccccchhhcccccCcceeecccccccc
Q 042625 1155 HDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKE 1234 (2346)
Q Consensus 1155 ~dvnlgravfwei~~rlP~Sl~~i~w~~sf~svyskdNpnllFsm~GFevrilpk~r~~~~~~~~~~e~~W~L~n~~tke 1234 (2346)
|||||||||||||++|+|+|+++++|+++|+|||||||||+||||||||||||||||+..|.++ +||||+|+|+.|||
T Consensus 1139 ~dvNlGRavfwei~~R~p~s~tt~~we~sf~svysk~nPnllFsM~GfevrIlpk~r~~~e~s~--~dgvW~L~ne~tk~ 1216 (2321)
T KOG1795|consen 1139 HDVNLGRAVFWEIKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMIEEESS--KDGVWNLQNERTKE 1216 (2321)
T ss_pred ccccchhHHHHHHHhhccchhhhhhhccceeeEEecCCCceeeeecceEEEEcchhhhhhhhhc--ccceeecccccccc
Confidence 9999999999999999999999999999999999999999999999999999999998877775 89999999999999
Q ss_pred ccceeeeecCHHHHHHHHHHHHHHhHhcCcchHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhhhcc
Q 042625 1235 RTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGL 1314 (2346)
Q Consensus 1235 ~ta~a~l~Vs~e~i~~F~nrirqIlmssgStTFtKIa~KWNt~li~l~tYfREA~~~T~~lld~Lvk~E~KIq~RIK~GL 1314 (2346)
|||+|||+||||+|++|+||||||||||||||||||||||||+|||+|||||||+++|++|||+|||||+|||||||+||
T Consensus 1217 rta~a~l~V~ee~i~~F~nrir~IlmsSGStTFtKia~kWNTali~l~TYfREaiv~T~~LldlLvk~E~kIq~rvKigl 1296 (2321)
T KOG1795|consen 1217 RTAQAFLRVDEEGIKMFENRIRQILMSSGSTTFTKIANKWNTALIGLMTYFREAIVNTQELLDLLVKCENKIQTRVKIGL 1296 (2321)
T ss_pred hhhheeeEecHHHHHHHHHHHHHHhhccCchhHHHHHHHHhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccCCccccccccccccccccccCcccccccccccceeeccCCCccccccccccccccccchhhhhhHH
Q 042625 1315 NSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQ 1394 (2346)
Q Consensus 1315 NSKMPsRFPpvvFYtPKElGGLGMLS~ghilIp~SDL~~skqtd~githfr~gmsh~~d~lIP~i~rYI~~We~Ef~dSq 1394 (2346)
||||||||||||||||||+|||||||||||+||||||+||+|||+||||||+||||+||+||||+||||||||+||+|||
T Consensus 1297 NSKMPsRFPPvvFYtPKElGGLGMlS~ghilip~sDl~wskqtd~githfrsgm~h~~~~lIP~l~rYiq~We~EF~dSq 1376 (2321)
T KOG1795|consen 1297 NSKMPSRFPPVVFYTPKELGGLGMLSMGHILIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQ 1376 (2321)
T ss_pred ccCCCCCCCCeeeeChhhcCccceeecCcEeechhhcccccccCccceeecccCCcchhhhhhHHHHhcchhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccccCCCCccccccccccccccccccccccccchhhhcccCCCcccccccccCc
Q 042625 1395 RVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGK 1474 (2346)
Q Consensus 1395 rVW~Ey~~kr~Ea~~qnrrlt~edle~swdrGIPRI~TLfqkdR~tLaYDkGwRvR~~fk~y~~~k~npFwWT~~~HDGK 1474 (2346)
|||+|||.|||||.+||||||+||||||||||||||||||||||||||||||||||++|||||++|+|||||||||||||
T Consensus 1377 RVWaEYa~krqea~~qnrrltledle~swDrGIPRinTLfQkdRhtLaYDkG~RvrteFkqYq~~k~npFWwT~qrHDGK 1456 (2321)
T KOG1795|consen 1377 RVWAEYALKRQEAPAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKQYQVLKQNPFWWTHQRHDGK 1456 (2321)
T ss_pred HHHHHHHhhhhhhhhhccccchhhhccccccCCchhhHHHhhcchhheecccchHHHHHHHHhccCCCCceecccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHhcCccccccccccccccCCCccccccccccccccccchhhhhHHHhhcCCCCCCcceeeecccccc
Q 042625 1475 LWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTIN 1554 (2346)
Q Consensus 1475 LWnLn~YrtDvIqaLGGvE~ILEHTLFkgT~F~sWeglFWEkasgfE~s~k~kkLTnAQRsGLsQIPNRRFtLWWSPTIN 1554 (2346)
|||||+||+||||||||||||||||||+||||++|||||||||||||++|||||||||||+|||||||||||||||||||
T Consensus 1457 LWnln~yrtD~iqALGGVegilehtlf~~t~f~s~e~Lfwekasgfees~k~KkltnaQr~gL~QipNrrftlwwspTin 1536 (2321)
T KOG1795|consen 1457 LWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPSWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTIN 1536 (2321)
T ss_pred cccccchhHHHHHHhcCcchhhhcccccccCcHHHHHHHHHhhcCchhhhHHHHHHHHHHhcccCCCccceEEeecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeeeeecceeeeeccccCcchhhHHHHHHHhhhhHhhHHHHHHHHHHHHHHhhhhcccchhhhccCCCcccccc
Q 042625 1555 RANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMN 1634 (2346)
Q Consensus 1555 RanVYVGfqvQlDlTGIfMhGKipTLKISlIqIFRaHLWqkIHeSiV~dlcqvld~e~~~L~I~~Vqke~iHPRKSYkmn 1634 (2346)
|||||||||||||||||||||||||||||||||||||||||||||+|+|+|||||+|||+|+||+|||||||||||||||
T Consensus 1537 rAnvyvgfQvQldLTgi~mhgkIptlkIsLiqifRaHlwQKihesvv~~lc~v~D~ELDal~iEtV~ketih~rKsykm~ 1616 (2321)
T KOG1795|consen 1537 RANVYVGFQVQLDLTGIYMHGKIPTLKISLIQIFRAHLWQKIHESVVNDLCQVFDQELDALSIETVQKETIHPRKSYKMN 1616 (2321)
T ss_pred hhhheeeeEEeeccceeEEeccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhcCcchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccccccCcCccccccccccccccccceEEEEEeeccCCCCchhhHHHHhhcccccCCCcccccCCCceEE
Q 042625 1635 SSCADILLFAAHRWPMSKPSLVAESKDMFDQKASNKYWVDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMI 1714 (2346)
Q Consensus 1635 SScADI~L~~~~~W~vskPsll~d~~d~~~~~~t~k~WiDvQLRWGDyDSHDIerY~RakfldYttd~~s~YPSptG~iI 1714 (2346)
||||||++++.++|.|++||++.+++|.++...++++|+|||||||||||||++||+||||||||+|++|+||||||+||
T Consensus 1617 SScAdIll~~~~~~~vs~ps~i~~skd~~~~~~~~klw~dvqLr~gdyds~dv~rytrAkfLd~Ttd~~s~ypsptGv~i 1696 (2321)
T KOG1795|consen 1617 SSCADILLGAGVKWGVSNPSLIPESKDLWDPFFTAKLWIDVQLRWGDYDSHDVERYTRAKFLDYTTDNASQYPSPTGVLI 1696 (2321)
T ss_pred chhHHHhhhcceeecCCCccccccchhhccccchhhhhhhhhhhccchhhhhHHHHHHhhhhhhhccccccCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccccccCCCCcHHHHHHHHHHHHhhCchhHHHHHHHHhhcccccCCCCCcccCCCChhhhccCceEEEEecc
Q 042625 1715 GLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDT 1794 (2346)
Q Consensus 1715 ~iDLaYN~~sayG~w~~glk~li~~am~~imk~NpaL~vLRERIRKgLQLYsSe~~e~~l~s~Ny~eLF~n~~~wfVDDt 1794 (2346)
|||||||+||||||||||+|||||+||++|||+|||||||||||||||||||||||||||+||||||||+||++||||||
T Consensus 1697 ~iDL~YN~~sayGNw~~g~Kpli~qsM~kImkanpalyvLRERiRKgLQlYsSe~~e~~l~ssNygeLFsnqi~lfVDdt 1776 (2321)
T KOG1795|consen 1697 GIDLAYNLHSAYGNWFPGLKPLIQQSMNKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSSNYGELFSNQIILFVDDT 1776 (2321)
T ss_pred EeeehhhhhhhhcccccccHHHHHHHHHHHHhhCcHHHHHHHHHHHhhhhhccCCCCceeccccHHHhhhcceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeeccCcccccccceeEEEEecCCCceEEEEEeeccccccchhhhhhhhhhHHHHHHHhhcCCcccCCceEEE
Q 042625 1795 NVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIV 1874 (2346)
Q Consensus 1795 nvYRvtihkt~eGn~~tKpiNG~ififNP~TGqLflKiihtsvwagqKRl~QlakwktAeEvaalirSLP~eEqPkqiIV 1874 (2346)
||||||||||||||+||||||||||||||+||||||||||||||||||||+||||||||||||||+||||+|||||||||
T Consensus 1777 nvyRvtihktfegnlttk~ingaiFi~nPrtG~LflKiihtsvwaGqkrl~qlaKwktAeeVaaLirslp~EEqpkqiIV 1856 (2321)
T KOG1795|consen 1777 NVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIV 1856 (2321)
T ss_pred ceEEEEeeeccccccccccccceEEEecCCCCceEEEEeecccccchhHHHHHHhHhhHHHHHHHHhcCChhhcCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccchhhhhcccCCceeeeccccccchhhhhhhhccccchhccCCCceEEeeehhhHhhccChhhHHHHHHHHHHhh
Q 042625 1875 TRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRAL 1954 (2346)
Q Consensus 1875 trk~mldplevhlldfPnI~ik~sel~lpF~a~~ki~k~~dlil~atepqm~lfNlYDdWL~siSsyTaFsRliLiLR~l 1954 (2346)
|||||||||||||||||||+||||||++||||||||+||+|+||+|||||||+||||||||++||||||||||+||||||
T Consensus 1857 trk~MlDplEvhllDfPnI~ik~sel~lPFqa~m~i~k~~dlilkatEpqmvlfNlYddWl~tissyTaFsRliLilral 1936 (2321)
T KOG1795|consen 1857 TRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACMKIEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 1936 (2321)
T ss_pred echhccChHHHhhccCCceeeecccccccHHHHhhHHHHhhHHhhccCceEEEEehhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHhhhccCCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcCCccchhhhhhceeccccCCCchhH
Q 042625 1955 HVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQR 2034 (2346)
Q Consensus 1955 ~vn~~k~k~il~p~~~~~~~~~h~WPslsdeeWi~vE~~LkDlIl~dy~kk~nV~~~sLtqsEirDIILG~ei~~pS~~r 2034 (2346)
|||+|+||+||+||+++++++||+||+|||+|||+||+|||||||+|||||||||+++|||||||||||||+|++||.||
T Consensus 1937 ~vn~e~~k~il~~d~t~i~~~~hiWP~~tD~qWikvE~qlkDLIl~dY~kk~nvn~s~LtqsEirDIilG~~isaps~qr 2016 (2321)
T KOG1795|consen 1937 HVNEERAKMILKPDKTTITEPHHIWPSLTDEQWIKVEVQLKDLILADYGKKNNVNVSSLTQSEIRDIILGMEISAPSQQR 2016 (2321)
T ss_pred cCCHHHHhhhcCCCcceeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHhhhheeeeecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcceEEEEEeeecccCceEEEEecCcccccccccchhhhHhHhhhccccccccceeeccccccccccE
Q 042625 2035 QQIAEIEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYT 2114 (2346)
Q Consensus 2035 q~~~eie~~~~~~~~~t~~~t~t~n~~G~~i~~~t~s~yE~~~f~skt~WR~Rai~~~~L~lr~~~i~v~~~d~~e~~~t 2114 (2346)
||+||||||.++++|+||++|+|+|+|||||+++|+++||+++|+|+++||+|||++++|+||++||||+++|+.+.++|
T Consensus 2017 qqiaeiekq~~e~~q~ta~~t~t~n~~gde~i~~~ts~ye~~~f~sk~eWr~~ais~t~l~Lr~~~iyvnsddi~e~~~t 2096 (2321)
T KOG1795|consen 2017 QQIAEIEKQTKEQSQLTAVTTRTTNVHGDEIIVTTTSNYETQTFSSKTEWRVRAISATNLPLRTNHIYVNSDDIKETGYT 2096 (2321)
T ss_pred HHHHHHHHhhhhhhhheeeceeeecccCceEEEEecccchhhhccchHHHHHHHHhccCcceecceeeecchhhhhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEechhHHHHHHHhccccceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccccCCCcceEEeeCCC
Q 042625 2115 YIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPN 2194 (2346)
Q Consensus 2115 yVLPKNLLKKFI~ISDlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~LeDLE~LGWIHTQp~ 2194 (2346)
|+||+|||||||+|||+|||||||+||+||+||||||||+|||||||+|++++|++|..+|.|+.++|||+|||||||++
T Consensus 2097 yilPkNllkkFi~isD~r~qiag~~yG~s~~d~pqvkeIr~ivmvPQ~gs~~~v~lp~~lP~~~~l~d~e~Lgw~hTq~~ 2176 (2321)
T KOG1795|consen 2097 YILPKNLLKKFITISDLRTQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGSHQGVHLPSFLPIHGVLEDLEPLGWIHTQPN 2176 (2321)
T ss_pred eeccHHHHhhheeecchhhhhheeeeccCCCCCCccceEEEEEeccccccccccccCccCCcchhccCCcccchhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEecCcchhcccccccCCCCCCCCCCCCcceEeeEEe
Q 042625 2195 ELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLL 2274 (2346)
Q Consensus 2195 El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~LT~eG~eWG~~Nk~~~~~~~g~~~~~~~~~q~ll 2274 (2346)
|+++|||+||+||++++++|+ +++|+|||+||||||||+||+||++|||||+.|+|.+.+|.||.|+|++||||||
T Consensus 2177 el~~lsp~dV~th~ki~~~~k----~k~i~~t~~~tpgs~sl~ay~lt~~G~eWg~~n~d~g~~~~gy~pt~~e~~q~ll 2252 (2321)
T KOG1795|consen 2177 ELPQLSPQDVTTHAKILVDNK----EKCIIITCSFTPGSCSLTAYKLTPSGYEWGEVNKDKGNNPKGYLPTHYEKVQMLL 2252 (2321)
T ss_pred ccccCCHHHhhhhhhhhhcCc----cceEEEEeeccCCcceeeeeccCccccccchhcccccCCccccCccHHHHHHHhh
Confidence 999999999999999999985 5899999999999999999999999999999999998889999999999999999
Q ss_pred ecccceEEEeeCCCCccccccccccCCCceEEEEECCcccCccccCCcccccccccccccccccCCcCcCC
Q 042625 2275 SDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTF 2345 (2346)
Q Consensus 2275 sd~~~g~flvP~~~~WNy~f~~~~~~~~~~y~~~~~~P~~fy~~~hr~~hf~~f~~~~~~~~~~~~~~d~~ 2345 (2346)
||||+||||||++++|||+|||++|+++|+|++|+|+|++|||+.|||+||++|++++++ .|+|+||+|
T Consensus 2253 sdr~lG~f~VP~~~~WNYnF~g~~~~~~m~y~~klg~P~~fy~~~hRp~Hf~~f~~~~~~--~e~d~eD~f 2321 (2321)
T KOG1795|consen 2253 SDRFLGFFMVPENGVWNYNFMGVRHDPRMKYSLKLGNPKEFYHEFHRPTHFLRFSELEEG--GEEDREDVF 2321 (2321)
T ss_pred hhcceeEEEccCCCccceeccccccCCcceEEEEecCchHhhhccccchHhhhhhhhccC--ccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999987 467999987
|
|
| >COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF08083 PROCN: PROCN (NUC071) domain; InterPro: IPR012592 The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8 family [] | Back alignment and domain information |
|---|
| >PF12134 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR021983 This domain is found in eukaryotes, and is about 20 amino acids in length | Back alignment and domain information |
|---|
| >cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 | Back alignment and domain information |
|---|
| >PF10596 U6-snRNA_bdg: U6-snRNA interacting domain of PrP8; InterPro: IPR019580 This entry represents the interacting site for U6-snRNA, which is part of U4/U6 | Back alignment and domain information |
|---|
| >PF08082 PRO8NT: PRO8NT (NUC069), PrP8 N-terminal domain; InterPro: IPR012591 Pre-mRNA-processing-splicing factor 8 is a central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation | Back alignment and domain information |
|---|
| >PF10597 U5_2-snRNA_bdg: U5-snRNA binding site 2 of PrP8; InterPro: IPR019581 The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis [] | Back alignment and domain information |
|---|
| >PF08084 PROCT: PROCT (NUC072) domain; InterPro: IPR012984 The PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [] | Back alignment and domain information |
|---|
| >PF10598 RRM_4: RNA recognition motif of the spliceosomal PrP8; InterPro: IPR019582 The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing | Back alignment and domain information |
|---|
| >cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family | Back alignment and domain information |
|---|
| >COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains | Back alignment and domain information |
|---|
| >smart00232 JAB_MPN JAB/MPN domain | Back alignment and domain information |
|---|
| >cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 | Back alignment and domain information |
|---|
| >cd08061 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain | Back alignment and domain information |
|---|
| >KOG1795 consensus U5 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors | Back alignment and domain information |
|---|
| >cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase | Back alignment and domain information |
|---|
| >PF05021 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport | Back alignment and domain information |
|---|
| >cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic | Back alignment and domain information |
|---|
| >cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex | Back alignment and domain information |
|---|
| >cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs) | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) | Back alignment and domain information |
|---|
| >cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin | Back alignment and domain information |
|---|
| >KOG2834 consensus Nuclear pore complex, rNpl4 component (sc Npl4) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons | Back alignment and domain information |
|---|
| >cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic | Back alignment and domain information |
|---|
| >cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons | Back alignment and domain information |
|---|
| >COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT) | Back alignment and domain information |
|---|
| >cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f | Back alignment and domain information |
|---|
| >cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme | Back alignment and domain information |
|---|
| >KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons | Back alignment and domain information |
|---|
| >cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2346 | ||||
| 4i43_B | 1564 | Crystal Structure Of Prp8:aar2 Complex Length = 156 | 0.0 | ||
| 3zef_B | 1531 | Crystal Structure Of Prp8:aar2 Complex: Second Crys | 0.0 | ||
| 3sbg_A | 565 | Crystal Structure Of A Prp8 C-Terminal Fragment Len | 1e-180 | ||
| 3e9l_A | 257 | Crystal Structure Of Human Prp8, Residues 1755-2016 | 1e-139 | ||
| 3enb_A | 222 | Crystal Structure Of Prp8 Core Domain Iv Length = 2 | 1e-120 | ||
| 2p87_A | 273 | Crystal Structure Of The C-Terminal Domain Of C. El | 1e-117 | ||
| 2p8r_A | 273 | Crystal Structure Of The C-Terminal Domain Of C. El | 1e-117 | ||
| 3e66_A | 282 | Crystal Structure Of The Beta-Finger Domain Of Yeas | 1e-112 | ||
| 3sbt_A | 260 | Crystal Structure Of A Aar2-prp8 Complex Length = 2 | 1e-107 | ||
| 3e9p_A | 255 | Crystal Structure Of Yeast Prp8, Residues 1827-2092 | 1e-106 | ||
| 3e9o_A | 258 | Crystal Structure Of Yeast Prp8, Residues 1836-2092 | 1e-101 | ||
| 3lru_A | 160 | Hprp8 Non-Native Subdomain Length = 160 | 2e-81 | ||
| 2og4_A | 254 | Structure Of An Expanded Jab1-mpn-like Domain Of Sp | 4e-56 |
| >pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex Length = 1564 | Back alignment and structure |
|
| >pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form At 3.1 Angstrom Resolution Length = 1531 | Back alignment and structure |
| >pdb|3SBG|A Chain A, Crystal Structure Of A Prp8 C-Terminal Fragment Length = 565 | Back alignment and structure |
| >pdb|3E9L|A Chain A, Crystal Structure Of Human Prp8, Residues 1755-2016 Length = 257 | Back alignment and structure |
| >pdb|3ENB|A Chain A, Crystal Structure Of Prp8 Core Domain Iv Length = 222 | Back alignment and structure |
| >pdb|2P87|A Chain A, Crystal Structure Of The C-Terminal Domain Of C. Elegans Pre-Mrna Splicing Factor Prp8 Length = 273 | Back alignment and structure |
| >pdb|2P8R|A Chain A, Crystal Structure Of The C-Terminal Domain Of C. Elegans Pre-Mrna Splicing Factor Prp8 Carrying R2303k Mutant Length = 273 | Back alignment and structure |
| >pdb|3E66|A Chain A, Crystal Structure Of The Beta-Finger Domain Of Yeast Prp8 Length = 282 | Back alignment and structure |
| >pdb|3SBT|A Chain A, Crystal Structure Of A Aar2-prp8 Complex Length = 260 | Back alignment and structure |
| >pdb|3E9P|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1827-2092 Length = 255 | Back alignment and structure |
| >pdb|3E9O|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1836-2092 Length = 258 | Back alignment and structure |
| >pdb|3LRU|A Chain A, Hprp8 Non-Native Subdomain Length = 160 | Back alignment and structure |
| >pdb|2OG4|A Chain A, Structure Of An Expanded Jab1-mpn-like Domain Of Splicing Factor Prp8p From Yeast Length = 254 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Length = 565 | Back alignment and structure |
|---|
Score = 877 bits (2266), Expect = 0.0
Identities = 303/567 (53%), Positives = 394/567 (69%), Gaps = 14/567 (2%)
Query: 1773 YLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKV 1832
++S NY E+F+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLK+
Sbjct: 2 AMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKI 61
Query: 1833 IHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN 1892
IHTSVWAGQKRL QLAKWKTAEEV+ALVRSLP EEQPKQIIVTRK MLDPLEVH+LDFPN
Sbjct: 62 IHTSVWAGQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPN 121
Query: 1893 IVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILR 1952
I I+ +EL+LPF A + I+K D+++KATEPQMVLFNIYDDWL ISSYTAFSRL L+LR
Sbjct: 122 IAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLLR 181
Query: 1953 ALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSA 2012
AL N E AKM+L D TI + +H+WPS +D+QW+ +E +RDLIL++Y +K NVN SA
Sbjct: 182 ALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISA 241
Query: 2013 LTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKE-------ASQLTAVTTKTTNVHGDEL 2065
LTQ+EI+DIILG I PS +RQ++AE+E E A T + TKT N G+E+
Sbjct: 242 LTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKTKTINAQGEEI 301
Query: 2066 IVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKF 2125
+V ++ YE F SK +WR AI+ T LYLR+ +IYV+++D E Y++PKN+LKKF
Sbjct: 302 VVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKF 361
Query: 2126 ICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDF--LNDL 2183
I I+D++ Q++ ++YG+S D+P+VKEI+ + + PQ G V + + D L
Sbjct: 362 IEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGL 421
Query: 2184 EPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTP 2243
E LGW+HTQ EL ++ ++ +H+++ + K CI ++ TPGS SL+AY LT
Sbjct: 422 ELLGWIHTQTEELKFMAASEVATHSKLFADKK----RDCIDISIFSTPGSVSLSAYNLTD 477
Query: 2244 SGYEWGRVNKDTGS-NPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVS 2302
GY+WG NKD + G+ PT Q+LLSDR G +++P WNY FMG
Sbjct: 478 EGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQE 537
Query: 2303 MKYGVKLGTPREYYHEDHRPTHFLEFS 2329
Y K G P E+Y+E HRP HFL+FS
Sbjct: 538 GDYNFKYGIPLEFYNEMHRPVHFLQFS 564
|
| >2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Length = 273 | Back alignment and structure |
|---|
| >3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14 Length = 257 | Back alignment and structure |
|---|
| >3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3e66_A 3e9o_A* 3e9p_A Length = 260 | Back alignment and structure |
|---|
| >2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Length = 254 | Back alignment and structure |
|---|
| >3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A Length = 222 | Back alignment and structure |
|---|
| >2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178 | Back alignment and structure |
|---|
| >3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2346 | |||
| 3sbg_A | 565 | PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, | 100.0 | |
| 3sbt_A | 260 | PRE-mRNA-splicing factor 8; rnaseh like domain, VH | 100.0 | |
| 3e9l_A | 257 | PRE-mRNA-processing-splicing factor 8; nucleotidyl | 100.0 | |
| 3enb_A | 222 | PRE-mRNA-processing-splicing factor 8; PRP8 domain | 100.0 | |
| 2p8r_A | 273 | PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t | 100.0 | |
| 2og4_A | 254 | PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN | 100.0 | |
| 3rzv_A | 211 | STAM-binding protein; ubiquitin hydrolase, endosom | 99.91 | |
| 2znr_A | 178 | AMSH-like protease; metal binding protein, alterna | 99.88 | |
| 4b4t_V | 306 | 26S proteasome regulatory subunit RPN11; hydrolase | 98.15 | |
| 2kcq_A | 153 | MOV34/MPN/PAD-1 family; NESG, structure, structura | 97.55 | |
| 2kks_A | 146 | Uncharacterized protein; NESG, structural genomics | 97.24 | |
| 1oi0_A | 124 | AF2198, hypothetical protein AF2198; proteasome, d | 96.56 | |
| 2o95_A | 187 | 26S proteasome non-ATPase regulatory subunit 7; PS | 94.47 | |
| 2v8f_C | 26 | MDIA1, profilin IIA; alternative splicing, protein | 85.29 | |
| 4e0q_A | 141 | COP9 signalosome complex subunit 6; MPN (MPR1P and | 83.06 |
| >3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-236 Score=2054.73 Aligned_cols=553 Identities=55% Similarity=0.947 Sum_probs=487.9
Q ss_pred ccCCCChhhhccCceEEEEeccceEEEEeeeeccCcccccccceeEEEEecCCCceEEEEEeeccccccchhhhhhhhhh
Q 042625 1773 YLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKT 1852 (2346)
Q Consensus 1773 ~l~s~Ny~eLF~n~~~wfVDDtnvYRvtihkt~eGn~~tKpiNG~ififNP~TGqLflKiihtsvwagqKRl~Qlakwkt 1852 (2346)
|||||||||||+||++||||||||||||||||||||++|||||||||||||+||||||||||||||||||||+|||||||
T Consensus 2 ~Lns~Ny~eLF~nq~~~fvDDtnVYRVtihkTfEGN~tTKpiNGaififNP~TGqLfLKiIHtsvwaGQKRl~QlaKWKt 81 (565)
T 3sbg_A 2 AMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKT 81 (565)
T ss_dssp CBCTTGGGGGGSSSCEEEEECTTTSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSSHHHHHHHHH
T ss_pred cccccchHHHhcCceEEEEeCCcEEEEEEEeeccCceeeccccceEEEEeCCCCcEEEEEEEehhcccchHHHHHHhHhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcccCCceEEEecccccchhhhhcccCCceeeeccccccchhhhhhhhccccchhccCCCceEEeeehh
Q 042625 1853 AEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYD 1932 (2346)
Q Consensus 1853 AeEvaalirSLP~eEqPkqiIVtrk~mldplevhlldfPnI~ik~sel~lpF~a~~ki~k~~dlil~atepqm~lfNlYD 1932 (2346)
||||||||||||+||||||||||||||||||||||||||||+||||||+|||||+||+|||+|+||||||||||||||||
T Consensus 82 AEEvaaLirSlP~EEqPkqiIvtrkgmlDpLevhllDfPni~ik~seL~lPF~a~mkiek~~D~ilkAtepqmvlfnlYD 161 (565)
T 3sbg_A 82 AEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYD 161 (565)
T ss_dssp HHHHHHHHHHSCTTTSCSEEEESSGGGHHHHHHHTTTCTTSEEECBSSCCGGGGGGSSHHHHHHHHHCCSCEEEEEETTT
T ss_pred HHHHHHHHhcCCHhhCCceEEEechhhhhhHHHhhccCCCceeeccccccCHHHHhhhHHHHHHHhhcCCCcEEEEEeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccChhhHHHHHHHHHHhhccChHHhhhccCCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcCCc
Q 042625 1933 DWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSA 2012 (2346)
Q Consensus 1933 dWL~siSsyTaFsRliLiLR~l~vn~~k~k~il~p~~~~~~~~~h~WPslsdeeWi~vE~~LkDlIl~dy~kk~nV~~~s 2012 (2346)
|||++||||||||||||||||||||++|||+||+||++++|++||+||+|||||||+||++||||||+|||||||||++|
T Consensus 162 dWL~siSsyTAFsRliLiLRal~vn~~ktk~iL~pd~~~~t~~hHiWPslsd~~Wi~vE~~lkDLIL~dY~kknnvn~~s 241 (565)
T 3sbg_A 162 DWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISA 241 (565)
T ss_dssp TGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHHTSSTTSCBCTTCSSBCCCHHHHHHHHHHHHHHHHHTTTTTSCCCGGG
T ss_pred hhhhcccchHHHHHHHHHHHHhccCHHHHHHHhcCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhceeccccCCCchhHHHHHHHHHHhhh-------hcceEEEEEeeecccCceEEEEecCcccccccccchhhh
Q 042625 2013 LTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKE-------ASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWR 2085 (2346)
Q Consensus 2013 LtqsEirDIILG~ei~~pS~~rq~~~eie~~~~~-------~~~~t~~~t~t~n~~G~~i~~~t~s~yE~~~f~skt~WR 2085 (2346)
|||||||||||||||+|||+|||||||||++.++ ++|+||+||||+|+|||||+|+|+|||||++|+||||||
T Consensus 242 LTqsEIrDIILG~~i~~pS~qrqq~aeie~~~~~~~~~~~~~~q~Ta~tTkT~NvhGeeIiv~Tts~YEqq~FsSKtdWR 321 (565)
T 3sbg_A 242 LTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKTKTINAQGEEIVVVASADYESQTFSSKNEWR 321 (565)
T ss_dssp CCHHHHHHHHHTC-------------------------------------------------------------CHHHHH
T ss_pred ccHhhHhhhhhccccCCcchHHHHHHHHHHhhhcccccchhhhceeEEEEEEEecCCCEEEEEecCcccccccccccchH
Confidence 9999999999999999999999999999999998 779999999999999999999999999999999999999
Q ss_pred HhHhhhccccccccceeeccccccccccEEEechhHHHHHHHhccccceEEEEEeccCCCCCCCceeEEEEEcCCccccc
Q 042625 2086 VRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTH 2165 (2346)
Q Consensus 2086 ~Rai~~~~L~lr~~~i~v~~~d~~e~~~tyVLPKNLLKKFI~ISDlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~ 2165 (2346)
+|||++++||||++||||+++|+.+++++||||+||++|||+|||+||||||||||++|+||++||||+|||||||+||+
T Consensus 322 ~RAIaatnL~lR~~nIYV~sdd~~e~~~tyVlPkNLLkKFI~IADlrTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~ 401 (565)
T 3sbg_A 322 KSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHV 401 (565)
T ss_dssp HHHHHHTTGGGGGGSEEECCCCCCTTSCEEEEEHHHHHHHHHHSCSSSCCEEEEEEEEETTEEEEEEEEEEECCCEEECS
T ss_pred HHHhhhcchhhhhceEEECcccccCCCcEEEccHHHHHHHHHHhhccceeEEEEecCCCCCCCCeEEEEEEEECCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCCCCCcc---cccCCCcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEecC
Q 042625 2166 QQVHLPSALPEHD---FLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLT 2242 (2346)
Q Consensus 2166 ~tVelp~~lP~hd---~LeDLE~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~LT 2242 (2346)
++|++| ++|+|+ +++|||+||||||||+|+|||||+||+|||++|++|+ + ++|+||||||||||||+||+||
T Consensus 402 ~sv~lp-~lp~he~~~~l~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~n~---~-~~I~itvsftPGS~SLsAy~LT 476 (565)
T 3sbg_A 402 GSVQIS-NIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKK---R-DCIDISIFSTPGSVSLSAYNLT 476 (565)
T ss_dssp SCEEEC-CCCCCTTSTTCTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSC---T-TCEEEEEEEETTEEEEEEEEEC
T ss_pred ceEECC-CCCccccccccccCEecceeeecCCcccccCHHHHHHHHHHHHhCC---C-CeEEEEEEecCCceEEEEEecC
Confidence 999999 999999 8899999999999999999999999999999999997 5 7899999999999999999999
Q ss_pred cchhcccccccCC-CCCCCCCCCCcceEeeEEeecccceEEEeeCCCCccccccccccCCCceEEEEECCcccCccccCC
Q 042625 2243 PSGYEWGRVNKDT-GSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHR 2321 (2346)
Q Consensus 2243 ~eG~eWG~~Nk~~-~~~~~g~~~~~~~~~q~llsd~~~g~flvP~~~~WNy~f~~~~~~~~~~y~~~~~~P~~fy~~~hr 2321 (2346)
++|||||++|+|. .++|+||+|+|++|+||+|||||+||||||++|+|||+|||+.|+++|+|+|++|+|++||||+||
T Consensus 477 ~eGyeWG~~N~d~~~~~p~g~~~~~~~~~q~llSd~~~G~flvP~~~~WNy~f~g~~~~~~~~y~l~l~~P~~fy~e~HR 556 (565)
T 3sbg_A 477 DEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHR 556 (565)
T ss_dssp HHHHHHHHTTTTCCSSCCTTCCGGGEEECEEEEETTSCCEEEEETTSCCBCTTCGGGCCTTCCCCEEECCCCCTTCTTSS
T ss_pred HhHHHHHhhcccccccCCCCCCccccceeEEEEecceeeEEEccCCCcccccccccccCCCCeeeEEeCCchhhhccccc
Confidence 9999999999996 559999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc
Q 042625 2322 PTHFLEFSN 2330 (2346)
Q Consensus 2322 ~~hf~~f~~ 2330 (2346)
|.||++|++
T Consensus 557 p~HF~~F~~ 565 (565)
T 3sbg_A 557 PVHFLQFSE 565 (565)
T ss_dssp CC-------
T ss_pred hHhHhcccC
Confidence 999999974
|
| >3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e66_A 3e9o_A* 3e9p_A | Back alignment and structure |
|---|
| >3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14 | Back alignment and structure |
|---|
| >3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A | Back alignment and structure |
|---|
| >2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A | Back alignment and structure |
|---|
| >2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A | Back alignment and structure |
|---|
| >2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A | Back alignment and structure |
|---|
| >4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} | Back alignment and structure |
|---|
| >2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
| >1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A | Back alignment and structure |
|---|
| >2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A | Back alignment and structure |
|---|
| >4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2346 | ||||
| d3e9oa1 | 253 | c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8 | 1e-162 | |
| d3enba1 | 219 | c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8 | 1e-139 | |
| d1lwub1 | 259 | d.171.1.1 (B:219-477) Fibrinogen C-terminal domain | 0.003 |
| >d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Prp8 beta-finger domain-like domain: Pre-mRNA-splicing factor 8, Prp8 species: Saccharomyces cerevisiae [TaxId: 4932]
Score = 498 bits (1283), Expect = e-162
Identities = 177/253 (69%), Positives = 210/253 (83%)
Query: 1774 LSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVI 1833
++S NY E+F+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLK+I
Sbjct: 1 MNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKII 60
Query: 1834 HTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNI 1893
HTSVWAGQKRL QLAKWKTAEEV+ALVRSLP EEQPKQIIVTRK MLDPLEVH+LDFPNI
Sbjct: 61 HTSVWAGQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNI 120
Query: 1894 VIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRA 1953
I+ +EL+LPF A + I+K D+++KATEPQMVLFNIYDDWL ISSYTAFSRL L+LRA
Sbjct: 121 AIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLLRA 180
Query: 1954 LHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSAL 2013
L N E AKM+L D TI + +H+WPS +D+QW+ +E +RDLIL++Y +K NVN SAL
Sbjct: 181 LKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISAL 240
Query: 2014 TQSEIRDIILGAE 2026
TQ+EI+DIILG
Sbjct: 241 TQTEIKDIILGQN 253
|
| >d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]} Length = 219 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2346 | |||
| d3e9oa1 | 253 | Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces ce | 100.0 | |
| d3enba1 | 219 | Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapi | 100.0 | |
| d1oi0a_ | 121 | Hypothetical protein AF2198 {Archaeon Archaeoglobu | 96.7 |
| >d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Prp8 beta-finger domain-like domain: Pre-mRNA-splicing factor 8, Prp8 species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=100.00 E-value=3.4e-119 Score=980.49 Aligned_cols=253 Identities=70% Similarity=1.135 Sum_probs=252.0
Q ss_pred cCCCChhhhccCceEEEEeccceEEEEeeeeccCcccccccceeEEEEecCCCceEEEEEeeccccccchhhhhhhhhhH
Q 042625 1774 LSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTA 1853 (2346)
Q Consensus 1774 l~s~Ny~eLF~n~~~wfVDDtnvYRvtihkt~eGn~~tKpiNG~ififNP~TGqLflKiihtsvwagqKRl~QlakwktA 1853 (2346)
|||+||||||+|+++||||||||||||+|||||||++|||||||||||||+||||||||||||||||||||+||||||||
T Consensus 1 l~s~Ny~eLF~n~~~~fVDDtnvYrvt~hkt~egn~~tkpiNG~ifIfNP~tGqLflKiiHtSvwaGQKRl~qLaKwktA 80 (253)
T d3e9oa1 1 MNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKTA 80 (253)
T ss_dssp BCTTSGGGGGSSSCEEEEECTTSSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSCHHHHHHHHHH
T ss_pred CCcccHHHHhcCCeEEEEecCceEEEEEEecccCCceeeeccceEEEEeCCCCcEEEEEEeehhccchhHHHHHHHHhHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcccCCceEEEecccccchhhhhcccCCceeeeccccccchhhhhhhhccccchhccCCCceEEeeehhh
Q 042625 1854 EEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDD 1933 (2346)
Q Consensus 1854 eEvaalirSLP~eEqPkqiIVtrk~mldplevhlldfPnI~ik~sel~lpF~a~~ki~k~~dlil~atepqm~lfNlYDd 1933 (2346)
|||||||||||+||||||||||||||+|||||||||||||+||||||+|||||+||++|++|+|++|||||||+||||||
T Consensus 81 eEv~alirSlP~eEqPkqiIvtrk~mldpLevhlldfPnI~I~~seL~lpF~~~mki~k~~dlil~ate~qmvlfnlYDd 160 (253)
T d3e9oa1 81 EEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYDD 160 (253)
T ss_dssp HHHHHHHHHSCTTTSCSEEEESSGGGHHHHHHHTTTCTTSEEECBCSCCCGGGGGGSHHHHHHHHHCSSCEEEEEETTTT
T ss_pred HHHHHHHHhCCHHHCCceEEEehhhhhchHHHhhccCCCeeEecccccccHHHHhhhHHHhhhhhccCCCcEEEEEhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccChhhHHHHHHHHHHhhccChHHhhhccCCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcCCcc
Q 042625 1934 WLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSAL 2013 (2346)
Q Consensus 1934 WL~siSsyTaFsRliLiLR~l~vn~~k~k~il~p~~~~~~~~~h~WPslsdeeWi~vE~~LkDlIl~dy~kk~nV~~~sL 2013 (2346)
||+++|||||||||+|||||||+|++|||+||+||+++++++||+||+|||||||+||++||||||+|||||+|||++||
T Consensus 161 WL~~iS~yTaFsRliLiLR~l~vn~~~~k~il~p~~~~~~~~~hlWPsltd~eWi~vEi~LkdLIl~dy~kk~nV~~~sL 240 (253)
T d3e9oa1 161 WLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISAL 240 (253)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHHHCSTTCCCCTTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGS
T ss_pred hhcccchHHHHHHHHHHHhhcccCHHHhhHhccCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhceeccc
Q 042625 2014 TQSEIRDIILGAE 2026 (2346)
Q Consensus 2014 tqsEirDIILG~e 2026 (2346)
|||||||||||++
T Consensus 241 TqsEirDiILGq~ 253 (253)
T d3e9oa1 241 TQTEIKDIILGQN 253 (253)
T ss_dssp CHHHHHHHHHTCC
T ss_pred CHHHHHHhhcCCC
Confidence 9999999999985
|
| >d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|