Citrus Sinensis ID: 042644

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
FDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMKHHI
Secondary Structure (PSIPRED)
ccccccEEccccccccccEEcccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEEccccccccccccccccEEEEEEcEEEEEEEcccccEEEEEEccccEEEEccccEEEEEEcccccEEEEEEEcccccccEEEccccccccccHHHHHHHHcccccccEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHcEEEEccccccccEEcccccccHHHccHHHHHcccccccccccccccEEEEEEcccccHHHcccccEEEEEEEccccEEEEEEcccccEEEEEEEcEEEEEEEHHcccEEEEEEEcccEEEEcccccEEEEEcccccEEEEEEEcccccccEEHHHHHHccccccHHHHHHHHHccHHHHHHHHHHccccccEEEEEccc
Coil and Loop (DISEMBL)
fdnlqdicptdttkkqtifinglpckspdrifasdfkstklrdagdtdkfpyssltlvtaadfpglntlglsvartdldvdgmvvphthpraseMLFVFKGVVIAGFVDTNRQVFQVMLKAgevcvfprgllhfgfNVGYEFATVFSVLnsqnpgvvsisdaafsdfdtiDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMKHHI
Flexible Loop (DISEMBL)
fdnlqdicptdttkkqtifinglpckspdriFASDFkstklrdagdtdkfpYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSemshfqdnklkimkhhi
Low Complexity Region (SEG)
FDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMKHHI
Disordered region (IsUnstruct)
*************KKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHF************
Disordered Region (DISOPRED)
FDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHF************
Disordered Region (DISEMBL)
FDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMKHHI
Disordered Region (DISPRO)
FDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMKH**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMKHHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q9FLT3	210	Germin-like protein subfa	yes	no	0.848	0.828	0.597	8e-54
Q2R352	222	Germin-like protein 11-1	yes	no	0.863	0.797	0.533	2e-49
Q6K5P8	223	Putative germin-like prot	no	no	0.839	0.771	0.429	2e-33
Q6K5P9	223	Putative germin-like prot	no	no	0.834	0.766	0.420	2e-31
Q9FMB0	222	Putative germin-like prot	no	no	0.829	0.765	0.436	2e-31
Q7XSN6	254	Germin-like protein 4-1 O	no	no	0.834	0.673	0.433	4e-31
P45852	233	Germin-like protein OS=Me	N/A	no	0.882	0.776	0.409	4e-31
Q6ESF0	229	Germin-like protein 2-4 O	no	no	0.858	0.768	0.416	6e-31
P92998	217	Germin-like protein subfa	no	no	0.790	0.746	0.443	1e-30
Q6K5Q0	216	Putative germin-like prot	no	no	0.834	0.791	0.420	1e-30

>sp|Q9FLT3|GL34_ARATH Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1

 Score =  209 bits (533), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 104/174 (59%), Positives = 131/174 (75%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
           DN+QD CPT   ++   FING PCK+P +I A DFKSTKL +AGDTD +  S++TL+TA 
Sbjct: 21  DNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTAL 80

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKA 121
           +FPGLNTLGLSV+RTDL+ DG V  H+HPR+SEMLFV KGVV AGFVDTN ++FQ +L+ 
Sbjct: 81  EFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQTVLQK 140

Query: 122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVR 175
           G+V VFP+GLLHF  + G+E AT FS  NSQNPGVV+I +    D + I  + R
Sbjct: 141 GDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNIGEVFGIDQEHIKIMTR 194

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2R352|GL111_ORYSJ Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 124/178 (69%), Gaps = 1/178 (0%)

Query: 4   LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
           LQD+CP     ++ +F+NG  CKSP  I ASDFK+  L  AGD D    SS  ++TA +F
Sbjct: 28  LQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEF 87

Query: 64  PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGE 123
           PGLNTLG+S+ARTD+ V G V+PH+HPRASEM+FV  G V+AGF DT  ++FQ  L  G+
Sbjct: 88  PGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQKTLAEGD 147

Query: 124 VCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS-DFDTIDDLVRKFIPF 180
           V +FPRGL+HF  N G+  AT FSVLNSQNPGVV I+ A F+ D +  + L+ + + F
Sbjct: 148 VFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEVAEGLMARMLSF 205

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6K5P8|GL23_ORYSJ Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 5/177 (2%)

Query: 3   NLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAAD 62
           +LQD+C  D  K  T+ +NG+ CK  + + A DF  + L  AG+T     S++T V  A 
Sbjct: 33  HLQDLCVAD--KASTVRVNGVACKDGEDVAAEDFFFSGLHMAGNTTNKQGSAVTAVNVAQ 90

Query: 63  FPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLK 120
            PGLNTLG+S+AR D  + G+  PHTHPRA+E+L V +G +  GFV +N   ++F  ++ 
Sbjct: 91  VPGLNTLGISLARIDYALHGLNPPHTHPRATEILTVLEGSLYVGFVTSNPENKLFTKVIN 150

Query: 121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRK 176
            G+V VFP+GL+HF FN G   A     L+SQNPGV+++++A F    +I DD++ K
Sbjct: 151 KGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGSKPSITDDILAK 207

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6K5P9|GL22_ORYSJ Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 106/176 (60%), Gaps = 5/176 (2%)

Query: 4   LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
           LQD C  D  K   + +NG PCK    + A DF  + L  AG+T     S++T V  A  
Sbjct: 34  LQDFCVVD--KMSQVRVNGFPCKDAKDVVAGDFFFSGLHMAGNTTNKQGSNVTTVNVAQI 91

Query: 64  PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKA 121
           PGLNT+G+S+ R D   +G+  PHTHPRA+E+  V +G +  GFV +N   ++F  +L  
Sbjct: 92  PGLNTMGVSLVRIDYAPNGLNPPHTHPRATEIPTVLEGSLYVGFVISNPENKLFTKVLNK 151

Query: 122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRK 176
           G+V VFP+GL+HF FN G   A   + L+SQNPGV+++ +A F    +I DD++ K
Sbjct: 152 GDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGSKPSISDDILAK 207

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FMB0|GL19_ARATH Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=3 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 100/172 (58%), Gaps = 2/172 (1%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
            +LQD C    T    +F+NG  CK P  +   DF  T L +A   +    S++T V   
Sbjct: 26  SSLQDFCVGVNTPADGVFVNGKFCKDPKLVTVEDFFFTGLHEARPPNPKTGSNVTAVNVN 85

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVML 119
           + PGLNTLG+S+ R D  V G   PHTHPRASE+L+V  G +  GFV +N   ++F   L
Sbjct: 86  NLPGLNTLGISLVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTL 145

Query: 120 KAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTID 171
             G+V VFP+GL+HF  NVG   A  F+ L+SQNPGV++I+D  F     ID
Sbjct: 146 YEGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGSNPQID 197

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XSN6|GL41_ORYSJ Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2

 Score =  134 bits (337), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 109/180 (60%), Gaps = 9/180 (5%)

Query: 4   LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTK-LRDAGDTDKFPYSSLTLVTAAD 62
           LQD C  D  K   +F+NG  CK+P ++ A+DF   K L   G+T     S++T VT  +
Sbjct: 33  LQDFCVAD--KLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNE 90

Query: 63  FPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-----VFQV 117
            PGLNTLG+S AR D   +G   PHTHPRA+E+L V +G ++ GFV +N+       F  
Sbjct: 91  LPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTK 150

Query: 118 MLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRK 176
           +L  G+V VFP+GL+HF  N G   A   + L+SQNPGV++I++A F     I DD++ K
Sbjct: 151 LLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGSTPPILDDVLAK 210

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P45852|GLP1_MESCR Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  134 bits (337), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/188 (40%), Positives = 104/188 (55%), Gaps = 7/188 (3%)

Query: 4   LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
           LQD C         +F+NGL CK P  +   DF    L    +TD     + TLVTAA+ 
Sbjct: 28  LQDFCVGVNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANL 87

Query: 64  PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-----RQVFQVM 118
           PGLNTLG+SVAR D    G+  PHTHPRA+E+  V +G    GFV +N      ++F  +
Sbjct: 88  PGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKV 147

Query: 119 LKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS--DFDTIDDLVRK 176
           L  G+V VFP+GL+HF  N+G       S L+SQNPGV++I++A F       +  L+R 
Sbjct: 148 LNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFGPEHLSQLMFLLRP 207

Query: 177 FIPFLCWT 184
            I    W+
Sbjct: 208 SISMRIWS 215

May be involved in seed germination.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|Q6ESF0|GL24_ORYSJ Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1

 Score =  134 bits (336), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 99/180 (55%), Gaps = 4/180 (2%)

Query: 2   DNLQDICPTDTTKKQTI---FINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLV 58
           D +QD C  D  + + +    +   PC+SP  + A DF  + +R AG+       +   V
Sbjct: 26  DAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSV 85

Query: 59  TAADFPGLNTLGLSVARTDLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQV 117
           T A FPGL+TLG+S AR DL   G V  PH HPRA+E   V  G V AGFVD+  ++F  
Sbjct: 86  TPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDSGGRLFAK 145

Query: 118 MLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKF 177
           +L+ GEV VFPR ++HF  NVG   ATV+   NS+NPG+V I    F        L R F
Sbjct: 146 VLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGSGIREAVLERAF 205

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P92998|GL11_ARATH Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 104/167 (62%), Gaps = 5/167 (2%)

Query: 2   DNLQDIC--PTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYS-SLTLV 58
           D LQD C  P  ++ +Q IF+NG  CK P +   SDF ++ L   G+T   P+  ++T+ 
Sbjct: 21  DPLQDYCVSPPPSSHQQ-IFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVT 79

Query: 59  TAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVM 118
           T A+ PGLNT+GL++AR D    G+V PH HPRASE+     GV++ GFVDT+ +VF   
Sbjct: 80  TTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQE 139

Query: 119 LKAGEVCVFPRGLLHFGFNV-GYEFATVFSVLNSQNPGVVSISDAAF 164
           L  GE  VFP+GL+HF +N+     A   S L+SQNPG   +S ++F
Sbjct: 140 LHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSF 186

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 104/176 (59%), Gaps = 5/176 (2%)

Query: 4   LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
           LQD C  D  K   + +NG  CK P  I   DF  + L  AG+T     S++T V  A  
Sbjct: 27  LQDFCVAD--KMSQVLVNGFACKDPAAITVEDFFFSGLHMAGNTSNRQGSAVTGVNVAQI 84

Query: 64  PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKA 121
            GLNTLG+S+AR D    G+  PH HPRA+E+L + +G +  GFV +N   ++F  +L  
Sbjct: 85  SGLNTLGISLARVDYAPYGLNPPHIHPRATEILTILEGSLYVGFVTSNPENKLFTKVLNK 144

Query: 122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRK 176
           G+V VFP+GL+HF FN G +     + L+SQNPGV++I++A F     I DD++ K
Sbjct: 145 GDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAK 200

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
225455388	223	PREDICTED: germin-like protein 11-1 [Vit	0.863	0.793	0.687	2e-63
224134238	200	predicted protein [Populus trichocarpa]	0.853	0.875	0.670	6e-61
255539993	218	Rhicadhesin receptor precursor, putative	0.917	0.862	0.619	7e-59
224119902	221	predicted protein [Populus trichocarpa]	0.853	0.791	0.638	4e-56
297797135	210	cupin family protein [Arabidopsis lyrata	0.863	0.842	0.587	2e-52
15240338	210	germin-like protein subfamily 3 member 4	0.848	0.828	0.597	4e-52
388518705	220	unknown [Medicago truncatula]	0.858	0.8	0.567	5e-51
388506030	228	unknown [Lotus japonicus]	0.858	0.771	0.544	1e-48
413925005	228	hypothetical protein ZEAMMB73_668139 [Ze	0.863	0.776	0.538	7e-48
297611951	222	Os11g0537300 [Oryza sativa Japonica Grou	0.863	0.797	0.533	1e-47

>gi|225455388|ref|XP_002272899.1| PREDICTED: germin-like protein 11-1 [Vitis vinifera] gi|302143899|emb|CBI23004.3| unnamed protein product [Vitis vinifera]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/179 (68%), Positives = 141/179 (78%), Gaps = 2/179 (1%)

Query: 2   DNLQDICPTDTT-KKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTA 60
           DNLQD CPT TT ++QT+F NGLPCK+P  I ASDFK++KL   GDTD F  SS TL+TA
Sbjct: 25  DNLQDACPTATTGQQQTVFFNGLPCKNPTNIIASDFKTSKLNHGGDTDNFFRSSTTLITA 84

Query: 61  ADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLK 120
           ADFPGLNTLGLS+ARTDLDVDGMV PH HPRASEM FV KG V+AGF+DT  QVFQ +LK
Sbjct: 85  ADFPGLNTLGLSIARTDLDVDGMVTPHAHPRASEMFFVRKGAVVAGFIDTKNQVFQKLLK 144

Query: 121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS-DFDTIDDLVRKFI 178
            G+V VFPRGLLHF  N GYE A VFSVLNSQNPG+VS++DA F  + D I  L+ + I
Sbjct: 145 EGDVFVFPRGLLHFCLNAGYELAVVFSVLNSQNPGMVSVTDAMFEPESDAIKMLIGRII 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134238|ref|XP_002321770.1| predicted protein [Populus trichocarpa] gi|222868766|gb|EEF05897.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 141/176 (80%), Gaps = 1/176 (0%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
           DNLQD CPT TT KQT+FING PCK+P+ I ASDFKS+KL   GDTD + +SS+T  TAA
Sbjct: 18  DNLQDTCPTATTDKQTVFINGFPCKNPNSIVASDFKSSKLSRPGDTDNYLHSSVTFNTAA 77

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKA 121
           DFPGLNTLGLS+ARTDL+V G+++PH+HPRASEM FV KGVVIAGF+DT  ++FQ  L+ 
Sbjct: 78  DFPGLNTLGLSIARTDLEVSGLMMPHSHPRASEMFFVSKGVVIAGFIDTQNKLFQKTLQP 137

Query: 122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS-DFDTIDDLVRK 176
           GEV VFP+GLLHF  N G+  A VFSVLNSQNPG V+I+DA    D DT++ LVRK
Sbjct: 138 GEVFVFPQGLLHFCVNNGFNSAVVFSVLNSQNPGTVNIADAMLEFDDDTLNKLVRK 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539993|ref|XP_002511061.1| Rhicadhesin receptor precursor, putative [Ricinus communis] gi|223550176|gb|EEF51663.1| Rhicadhesin receptor precursor, putative [Ricinus communis]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 117/189 (61%), Positives = 139/189 (73%), Gaps = 1/189 (0%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
           DN+QDICP   T KQ IFINGLPCK P+ I  SDFKS+KL   GDTD F  SS T+VTA 
Sbjct: 23  DNVQDICPAAPTSKQNIFINGLPCKRPESIAPSDFKSSKLSQPGDTDNFLRSSTTIVTAI 82

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKA 121
           DFPGLNTLGLS++R DLDVDG+V+P +HPRASE+ FV  GVVIAGFVDTN Q+FQ  LK 
Sbjct: 83  DFPGLNTLGLSISRIDLDVDGLVLPRSHPRASEIFFVGTGVVIAGFVDTNNQLFQSFLKE 142

Query: 122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF-SDFDTIDDLVRKFIPF 180
           G+V V PRGLLHF  N G + ATV+SVLNSQNPGVV+++ A F ++ D I+ LV +    
Sbjct: 143 GDVFVVPRGLLHFCLNAGNDAATVYSVLNSQNPGVVNVAGAMFETEPDIINKLVERIKSL 202

Query: 181 LCWTIRVSE 189
               I+  E
Sbjct: 203 SASAIKAME 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119902|ref|XP_002318191.1| predicted protein [Populus trichocarpa] gi|222858864|gb|EEE96411.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 113/177 (63%), Positives = 133/177 (75%), Gaps = 2/177 (1%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
           DNLQD CPT T   QT+FING PCK+P+ + ASDFKS+KL   GDT  F  SSLTL  AA
Sbjct: 23  DNLQDTCPTATIGMQTVFINGFPCKNPNSVVASDFKSSKLSHPGDTGTFFRSSLTLDMAA 82

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKA 121
           DFPGLNTLGLS+ARTDL+V+G+ +PH+HPRASE+ FV  GVV AGF DT  ++F  +LK 
Sbjct: 83  DFPGLNTLGLSIARTDLEVEGLTMPHSHPRASEIFFVSTGVVFAGFFDTQSKLFSKILKP 142

Query: 122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS--DFDTIDDLVRK 176
           GEV V P+GLLHF  N G E A +FSVLNSQNPGVV IS A+F   D + +D LVRK
Sbjct: 143 GEVFVVPQGLLHFFINTGDEAAVIFSVLNSQNPGVVKISGASFEPDDEEMVDKLVRK 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797135|ref|XP_002866452.1| cupin family protein [Arabidopsis lyrata subsp. lyrata] gi|297312287|gb|EFH42711.1| cupin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 131/177 (74%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
           DN+QD CPT   ++   FING PCK+P +I A DFKSTKL  AGDTD +  SS+TL+TA+
Sbjct: 21  DNMQDTCPTAPGEQSIFFINGYPCKNPTQINAQDFKSTKLTVAGDTDNYLQSSVTLLTAS 80

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKA 121
            FPGLNTLGLSV+RTDL+ DG V  H+HPR+SE+LFV KGVV AGFVDTN ++FQ +L+ 
Sbjct: 81  GFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSELLFVVKGVVFAGFVDTNNKIFQTVLRK 140

Query: 122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFI 178
           G+V VFP+GLLHF  + G+E AT FS  NSQNPGVV+I      D + I ++ R  +
Sbjct: 141 GDVFVFPKGLLHFCLSGGFERATAFSFYNSQNPGVVNIGGVFGIDQEHIKNMTRSLV 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240338|ref|NP_200983.1| germin-like protein subfamily 3 member 4 [Arabidopsis thaliana] gi|18202908|sp|Q9FLT3.1|GL34_ARATH RecName: Full=Germin-like protein subfamily 3 member 4; Flags: Precursor gi|10176868|dbj|BAB10075.1| germin-like protein-like [Arabidopsis thaliana] gi|91807086|gb|ABE66270.1| cupin family protein [Arabidopsis thaliana] gi|332010129|gb|AED97512.1| germin-like protein subfamily 3 member 4 [Arabidopsis thaliana]

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/174 (59%), Positives = 131/174 (75%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
           DN+QD CPT   ++   FING PCK+P +I A DFKSTKL +AGDTD +  S++TL+TA 
Sbjct: 21  DNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTAL 80

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKA 121
           +FPGLNTLGLSV+RTDL+ DG V  H+HPR+SEMLFV KGVV AGFVDTN ++FQ +L+ 
Sbjct: 81  EFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQTVLQK 140

Query: 122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVR 175
           G+V VFP+GLLHF  + G+E AT FS  NSQNPGVV+I +    D + I  + R
Sbjct: 141 GDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNIGEVFGIDQEHIKIMTR 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518705|gb|AFK47414.1| unknown [Medicago truncatula]

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/178 (56%), Positives = 131/178 (73%), Gaps = 2/178 (1%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
           DNLQD CP+ +  KQTIFINGLPCK+P  + A DFK+ +L +A   D F  +S+ LVTAA
Sbjct: 28  DNLQDTCPSISPNKQTIFINGLPCKNPANVTAQDFKTNELSNASSMDIFG-ASVKLVTAA 86

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKA 121
           +FPGLNTLGLS+ R D+D DG+V  H HPRA+EM+FV KGV++ GF+DT  QVFQ +LK 
Sbjct: 87  EFPGLNTLGLSIGRIDIDNDGLVNFHYHPRATEMIFVKKGVLLVGFIDTQNQVFQNVLKV 146

Query: 122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF-SDFDTIDDLVRKFI 178
           G+VCVFP+GL H+  N G+E A V+SV NSQNPG VSI    F +  ++++ L +K I
Sbjct: 147 GDVCVFPKGLFHYILNQGFEEAIVYSVYNSQNPGQVSIIPTTFDTTLESVEKLKKKII 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506030|gb|AFK41081.1| unknown [Lotus japonicus]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/178 (54%), Positives = 129/178 (72%), Gaps = 2/178 (1%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
           DNLQD CP     KQT+FINGLPCK+P  + + DF++ +L   G TD    +S  LVTAA
Sbjct: 29  DNLQDTCPAIPPNKQTLFINGLPCKNPGNVTSQDFRTMELSKPGSTDILG-ASKKLVTAA 87

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKA 121
           +FPGLNTLGLS+ RTD+D DG+V  H HPRA+EM+FV KGV++AGFVDT  Q+FQ  L+ 
Sbjct: 88  EFPGLNTLGLSIGRTDIDRDGLVNFHYHPRATEMIFVTKGVLLAGFVDTKNQIFQKFLQV 147

Query: 122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF-SDFDTIDDLVRKFI 178
           G+VCVFP+GL H+  N G+  ATVFSV NSQNP +VS++   F +  ++++ L ++ I
Sbjct: 148 GDVCVFPKGLFHYILNQGFVDATVFSVYNSQNPRIVSLTPTTFDTTLESLEKLKKRII 205

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413925005|gb|AFW64937.1| hypothetical protein ZEAMMB73_668139 [Zea mays]

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 127/180 (70%), Gaps = 3/180 (1%)

Query: 4   LQDICP-TDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAAD 62
           LQD+CP     +++ + +NG  CK P  I ASDFK+  L  AGD D    SS+++VTAA+
Sbjct: 30  LQDVCPMAPQGERRELSMNGFLCKHPSTILASDFKTLLLNHAGDLDSIARSSVSMVTAAE 89

Query: 63  FPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAG 122
           FPGLNTLGLS+ARTD+   G+V+PH+HPRASEM+FV  G V+ GF+DT  ++FQ  L  G
Sbjct: 90  FPGLNTLGLSMARTDIAPYGVVLPHSHPRASEMMFVHGGSVVVGFLDTEGRLFQKRLGEG 149

Query: 123 EVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF--SDFDTIDDLVRKFIPF 180
           EV VFPRGLLH+  N G+  AT FSVLNSQNPGVV ++ A F  SD D ++ L+ + + F
Sbjct: 150 EVFVFPRGLLHYVMNYGFGLATAFSVLNSQNPGVVGVAHAMFFASDSDVVEGLMARMLKF 209

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297611951|ref|NP_001068028.2| Os11g0537300 [Oryza sativa Japonica Group] gi|122245296|sp|Q2R352.1|GL111_ORYSJ RecName: Full=Germin-like protein 11-1; Flags: Precursor gi|77551291|gb|ABA94088.1| Germin-like protein subfamily 3 member 4 precursor, putative, expressed [Oryza sativa Japonica Group] gi|125534645|gb|EAY81193.1| hypothetical protein OsI_36372 [Oryza sativa Indica Group] gi|125577392|gb|EAZ18614.1| hypothetical protein OsJ_34136 [Oryza sativa Japonica Group] gi|255680151|dbj|BAF28391.2| Os11g0537300 [Oryza sativa Japonica Group]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 124/178 (69%), Gaps = 1/178 (0%)

Query: 4   LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
           LQD+CP     ++ +F+NG  CKSP  I ASDFK+  L  AGD D    SS  ++TA +F
Sbjct: 28  LQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEF 87

Query: 64  PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGE 123
           PGLNTLG+S+ARTD+ V G V+PH+HPRASEM+FV  G V+AGF DT  ++FQ  L  G+
Sbjct: 88  PGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQKTLAEGD 147

Query: 124 VCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS-DFDTIDDLVRKFIPF 180
           V +FPRGL+HF  N G+  AT FSVLNSQNPGVV I+ A F+ D +  + L+ + + F
Sbjct: 148 VFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEVAEGLMARMLSF 205

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2159193	210	AT5G61750 [Arabidopsis thalian	0.848	0.828	0.597	1.5e-51
TAIR|locus:2152317	222	AT5G38910 [Arabidopsis thalian	0.824	0.761	0.438	9.8e-32
TAIR|locus:2194569	217	GLP7 "germin-like protein 7" [	0.795	0.751	0.439	4.2e-31
TAIR|locus:2130020	222	GLP9 "germin-like protein 9" [	0.848	0.783	0.402	1.8e-30
TAIR|locus:2177187	221	AT5G39150 [Arabidopsis thalian	0.848	0.787	0.413	2.3e-30
TAIR|locus:2102955	227	AT3G04200 [Arabidopsis thalian	0.809	0.731	0.429	3e-30
TAIR|locus:2177157	221	AT5G39120 [Arabidopsis thalian	0.848	0.787	0.413	3e-30
TAIR|locus:2157220	221	AT5G39180 [Arabidopsis thalian	0.848	0.787	0.413	3e-30
TAIR|locus:2152267	223	AT5G38940 [Arabidopsis thalian	0.785	0.721	0.423	4.9e-30
TAIR|locus:2074514	229	AT3G05950 [Arabidopsis thalian	0.809	0.724	0.423	1.3e-29

TAIR|locus:2159193 AT5G61750 [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 104/174 (59%), Positives = 131/174 (75%)

Query:     2 DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
             DN+QD CPT   ++   FING PCK+P +I A DFKSTKL +AGDTD +  S++TL+TA 
Sbjct:    21 DNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTAL 80

Query:    62 DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKA 121
             +FPGLNTLGLSV+RTDL+ DG V  H+HPR+SEMLFV KGVV AGFVDTN ++FQ +L+ 
Sbjct:    81 EFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQTVLQK 140

Query:   122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVR 175
             G+V VFP+GLLHF  + G+E AT FS  NSQNPGVV+I +    D + I  + R
Sbjct:   141 GDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNIGEVFGIDQEHIKIMTR 194

GO:0005576 "extracellular region" evidence=ISM

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2152317 AT5G38910 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 75/171 (43%), Positives = 100/171 (58%)

Query:     3 NLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAAD 62
             +LQD C    T    +F+NG  CK P  +   DF  T L +A   +    S++T V   +
Sbjct:    27 SLQDFCVGVNTPADGVFVNGKFCKDPKLVTVEDFFFTGLHEARPPNPKTGSNVTAVNVNN 86

Query:    63 FPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLK 120
              PGLNTLG+S+ R D  V G   PHTHPRASE+L+V  G +  GFV +N   ++F   L 
Sbjct:    87 LPGLNTLGISLVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTLY 146

Query:   121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTID 171
              G+V VFP+GL+HF  NVG   A  F+ L+SQNPGV++I+D  F     ID
Sbjct:   147 EGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGSNPQID 197

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2194569 GLP7 "germin-like protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 73/166 (43%), Positives = 102/166 (61%)

Query:     2 DNLQDICPTDT-TKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYS-SLTLVT 59
             D LQD C +   +  Q IF+NG  CK P +   SDF ++ L   G+T   P+  ++T+ T
Sbjct:    21 DPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTT 80

Query:    60 AADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVML 119
              A+ PGLNT+GL++AR D    G+V PH HPRASE+     GV++ GFVDT+ +VF   L
Sbjct:    81 TANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQEL 140

Query:   120 KAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAF 164
               GE  VFP+GL+HF +N+     A   S L+SQNPG   +S ++F
Sbjct:   141 HPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSF 186

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2130020 GLP9 "germin-like protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 72/179 (40%), Positives = 104/179 (58%)

Query:     4 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
             LQD C    T    +F+NG  CK P  +FA DF  + L   G+T+    S++T V   + 
Sbjct:    30 LQDFCVGVNTPADGVFVNGKFCKDPRIVFADDFFFSSLNRPGNTNNAVGSNVTTVNVNNL 89

Query:    64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLK 120
              GLNTLG+S+ R D   +G   PHTHPRA+E+L V +G ++ GF+ +N+   ++F   L 
Sbjct:    90 GGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLN 149

Query:   121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDD--LVRKF 177
              G+V VFP GL+HF FN+G   A   + L+SQN GV++I++  F     +D   L R F
Sbjct:   150 VGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGSKPDVDPNVLARAF 208

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0009651 "response to salt stress" evidence=IEP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0000325 "plant-type vacuole" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

TAIR|locus:2177187 AT5G39150 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 74/179 (41%), Positives = 103/179 (57%)

Query:     4 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
             LQD C      K  +F+NG  CK P +  A DF S+ L  AG T+    S++T V     
Sbjct:    27 LQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQI 86

Query:    64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLK 120
             PGLNTLG+S+ R D    G   PHTHPRA+E+L + +G +  GFV +N+   ++F  +L 
Sbjct:    87 PGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLN 146

Query:   121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI--DDLVRKF 177
              G+V VFP G++HF  N+G   A  F+ L+SQN GV++I+D  F     I  D L + F
Sbjct:   147 PGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAF 205

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2102955 AT3G04200 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 73/170 (42%), Positives = 100/170 (58%)

Query:     4 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
             LQD C    ++   +F+NG  CK P  + A+DF  + L  A +T  F  S++T V     
Sbjct:    31 LQDFCVA-ASETNRVFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDVNKI 89

Query:    64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLK 120
             PGLNTLG+S+AR D    G   PH HPRA+E+L V KG ++ GFV +N+   ++F  +LK
Sbjct:    90 PGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLK 149

Query:   121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI 170
              G+V VFP GL+HF  NV    A  F+   SQNPG + I+DA F    +I
Sbjct:   150 RGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSI 199

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2177157 AT5G39120 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 74/179 (41%), Positives = 103/179 (57%)

Query:     4 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
             LQD C      K  +F+NG  CK P +  A DF S+ L  AG T+    S++T V     
Sbjct:    27 LQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVKSNVTTVNVDQI 86

Query:    64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLK 120
             PGLNTLG+S+ R D    G   PHTHPRA+E+L + +G +  GFV +N+   ++F  +L 
Sbjct:    87 PGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLN 146

Query:   121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI--DDLVRKF 177
              G+V VFP G++HF  N+G   A  F+ L+SQN GV++I+D  F     I  D L + F
Sbjct:   147 PGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAF 205

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2157220 AT5G39180 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 74/179 (41%), Positives = 103/179 (57%)

Query:     4 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
             LQD C      K  +F+NG  CK P +  A DF S+ L  AG T+    S++T V     
Sbjct:    27 LQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQI 86

Query:    64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLK 120
             PGLNTLG+S+ R D    G   PHTHPRA+E+L + +G +  GFV +N+   ++F  +L 
Sbjct:    87 PGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLN 146

Query:   121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI--DDLVRKF 177
              G+V VFP G++HF  N+G   A  F+ L+SQN GV++I+D  F     I  D L + F
Sbjct:   147 PGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGSTPPINPDILAQAF 205

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2152267 AT5G38940 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 69/163 (42%), Positives = 99/163 (60%)

Query:     4 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
             LQD C +  T    +F+NG  CK P  + A DF  + L+ A        S++T V   + 
Sbjct:    30 LQDFCVSANTSANGVFVNGKFCKDPKLVTADDFFFSGLQTARPITSPVGSTVTAVNVNNL 89

Query:    64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKA 121
              GLNTLG+S+ R D  V+G   PHTHPRA+E+L V +G ++ GFV +N   ++F  +L  
Sbjct:    90 LGLNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNPDNRLFSKVLNE 149

Query:   122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 164
             G+V VFP GL+HF  N+G   A  F+ L+SQNPGV++I++  F
Sbjct:   150 GDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIANTVF 192

GO:0005576 "extracellular region" evidence=ISM

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

TAIR|locus:2074514 AT3G05950 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 72/170 (42%), Positives = 100/170 (58%)

Query:     4 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADF 63
             LQD C         +F+NG  CK P  + A DF ++ L  AG+T     S++T V     
Sbjct:    30 LQDFCVA-VDDASGVFVNGKFCKDPKYVKAEDFFTSGLNIAGNTINRVGSNVTNVNVDKI 88

Query:    64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLK 120
             PGLNTLG+S+ R D    G   PHTHPRA+E+L V +G ++ GFV +N+   ++F  +L 
Sbjct:    89 PGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLY 148

Query:   121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI 170
              G+V VFP G++HF  NVG   A  F+ L SQNPG ++I+DA F    +I
Sbjct:   149 PGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSI 198

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2R352	GL111_ORYSJ	No assigned EC number	0.5337	0.8634	0.7972	yes	no
Q9FLT3	GL34_ARATH	No assigned EC number	0.5977	0.8487	0.8285	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037265001 SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (213 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
smart00835	146	smart00835, Cupin_1, Cupin	2e-28
pfam00190	139	pfam00190, Cupin_1, Cupin	7e-23
COG1917	131	COG1917, COG1917, Uncharacterized conserved protei	2e-04
pfam07883	70	pfam07883, Cupin_2, Cupin domain	0.003
COG0662	127	COG0662, {ManC}, Mannose-6-phosphate isomerase [Ca	0.004
TIGR03404	367	TIGR03404, bicupin_oxalic, bicupin, oxalate decarb	0.004

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score =  103 bits (260), Expect = 2e-28
 Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 2/132 (1%)

Query: 42  RDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG 101
            +           L      +FP LN LG+S AR +L+  GM+ PH HPRA+E+L+V +G
Sbjct: 1   LEPRPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRG 60

Query: 102 VVIAGFVDTN-RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS 160
               G VD N  +V+   L+ G+V V P+G  HF  N G E    F   N+ +P      
Sbjct: 61  EGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDE-NLEFVAFNTNDPNRRFFL 119

Query: 161 DAAFSDFDTIDD 172
               S    +  
Sbjct: 120 AGRNSVLRGLPP 131

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score = 89.3 bits (222), Expect = 7e-23
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 41  LRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLD-VDGMVVPHTHPRASEMLFVF 99
           L +           L      + PGL  L  S  R DL    G+++PH HP A+E+L+V 
Sbjct: 3   LLEPSPVFNSEGGRLETANPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEILYVL 62

Query: 100 KGVVIAGFVDTNRQVFQVM---LKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGV 156
           +G    GFV      F+V    L+ G+V V P G  H+ +N G          ++ NP  
Sbjct: 63  QGRGRVGFVVPGCG-FRVFHQKLREGDVFVVPAGFAHWQYNSGDP-GLELVAFDTNNPAN 120

Query: 157 V 157
            
Sbjct: 121 Q 121

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|224829 COG1917, COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 40  KLRDAGDTDKFPYSSLTLVTAA-DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFV 98
               A      P  S   V  +   P      LSV     +   ++  HTHP   + ++V
Sbjct: 11  HGSAADSAVPGPLFSGVAVVKSRVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYV 70

Query: 99  FKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148
            +G    G V    +  +  LKAG+V + P G++H    V  E   +  V
Sbjct: 71  LEG---EGTVQLEGEKKE--LKAGDVIIIPPGVVHGLKAVEDEPMVLLLV 115

Length = 131

>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 74  ARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQVMLKAGEVCVFPRG 130
               L       PH HP   E  +V +G   + + G         +V+LKAG+   FP G
Sbjct: 1   GLVTLPPGESSPPHRHPG-EEFFYVLEGEGELTVDGE--------EVVLKAGDSVYFPAG 51

Query: 131 LLHFGFNVGYEFATVFSV 148
           + H   N G E A +  V
Sbjct: 52  VPHRFRNTGDEPARLLDV 69

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). Length = 70

>gnl|CDD|223734 COG0662, {ManC}, Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 70  GLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQVMLKAGEVCV 126
             S+AR  +     +  H H    E  +V +G   V I G         +V +KAG+   
Sbjct: 35  RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG--------EEVEVKAGDSVY 86

Query: 127 FPRGLLHFGFNVG 139
            P G  H   N G
Sbjct: 87  IPAGTPHRVRNTG 99

Length = 127

>gnl|CDD|132445 TIGR03404, bicupin_oxalic, bicupin, oxalate decarboxylase family

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 16/85 (18%)

Query: 87  HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHF--GFNVGYEFAT 144
           H H + +E  +V  G      VD N + +   + AG++  FP G+ H   G + G EF  
Sbjct: 83  HWH-KEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLL 141

Query: 145 VFSVLNSQNPGVVSISDAAFSDFDT 169
           VF              D  FS+  T
Sbjct: 142 VF-------------DDGNFSEDGT 153

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins. Length = 367

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.95
PLN00212	493	glutelin; Provisional	99.94
PLN00212	493	glutelin; Provisional	99.93
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.92
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.9
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.88
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.74
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.5
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.43
COG1917	131	Uncharacterized conserved protein, contains double	99.43
PRK04190	191	glucose-6-phosphate isomerase; Provisional	99.42
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.38
COG3837	161	Uncharacterized conserved protein, contains double	99.24
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	99.19
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.18
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	99.13
PRK11171	266	hypothetical protein; Provisional	99.13
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.12
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	99.1
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	99.06
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.98
PRK11171	266	hypothetical protein; Provisional	98.95
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.86
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.84
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.63
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.62
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.56
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.55
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	98.54
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.44
COG1791	181	Uncharacterized conserved protein, contains double	98.43
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	98.4
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	98.38
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	98.36
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	98.32
COG4297	163	Uncharacterized protein containing double-stranded	98.27
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	98.24
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	98.22
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	98.19
PRK13500	312	transcriptional activator RhaR; Provisional	98.13
PRK13501	290	transcriptional activator RhaR; Provisional	98.1
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	98.01
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	97.99
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	97.97
PRK13502	282	transcriptional activator RhaR; Provisional	97.97
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.88
PRK13503	278	transcriptional activator RhaS; Provisional	97.81
KOG2107	179	consensus Uncharacterized conserved protein, conta	97.78
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.75
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	97.68
COG3257	264	GlxB Uncharacterized protein, possibly involved in	97.64
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	97.53
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	97.5
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	97.45
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	97.29
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	97.26
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	97.2
COG3450	116	Predicted enzyme of the cupin superfamily [General	96.96
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	96.56
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	96.31
PF07385	225	DUF1498: Protein of unknown function (DUF1498); In	95.98
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	95.61
PF12852	186	Cupin_6: Cupin	95.54
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	95.47
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	95.33
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	95.28
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	95.25
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	95.22
PLN02658	435	homogentisate 1,2-dioxygenase	95.15
PRK12335	287	tellurite resistance protein TehB; Provisional	94.88
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	94.83
COG1741	276	Pirin-related protein [General function prediction	94.82
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	94.66
COG3257	264	GlxB Uncharacterized protein, possibly involved in	94.24
TIGR02466	201	conserved hypothetical protein. This family consis	94.16
COG3806	216	ChrR Transcriptional activator [Transcription]	94.07
PRK10579	94	hypothetical protein; Provisional	94.07
COG5553	191	Predicted metal-dependent enzyme of the double-str	94.02
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	93.99
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	93.96
COG3822	225	ABC-type sugar transport system, auxiliary compone	93.93
PF06172	139	Cupin_5: Cupin superfamily (DUF985); InterPro: IPR	93.9
PRK09391	230	fixK transcriptional regulator FixK; Provisional	93.86
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	93.84
PF07847	200	DUF1637: Protein of unknown function (DUF1637); In	93.66
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	93.64
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	93.22
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	93.11
KOG3706	629	consensus Uncharacterized conserved protein [Funct	92.7
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	92.65
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	91.8
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	91.4
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	91.39
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	91.33
PRK15131	389	mannose-6-phosphate isomerase; Provisional	91.12
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	90.93
PLN02288	394	mannose-6-phosphate isomerase	90.93
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	90.7
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	89.83
PF14525	172	AraC_binding_2: AraC-binding-like domain	89.66
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	85.94
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	83.83
COG3123	94	Uncharacterized protein conserved in bacteria [Fun	83.25
PHA02984	286	hypothetical protein; Provisional	82.93
COG2850	383	Uncharacterized conserved protein [Function unknow	81.86
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	81.83

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.95  E-value=1.1e-26  Score=206.17  Aligned_cols=159  Identities=18%  Similarity=0.178  Sum_probs=140.4

Q ss_pred             CCCCCCCCCCceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEE
Q 042644           26 KSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIA  105 (205)
Q Consensus        26 k~~~~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v  105 (205)
                      +.+..-.+..|+++....++. ... ||+++.+++.+||+++  ++++++++++||++.++|||++++|++||++|++++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~p~-~~~-gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~  279 (367)
T TIGR03404       204 TGPAGEVPGPFTYHLSEQKPK-QVP-GGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARM  279 (367)
T ss_pred             cCCCCCCCccEEEEhhhCCce-ecC-CceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEE
Confidence            334444555688887766654 333 7799999999999988  699999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHH
Q 042644          106 GFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTI  185 (205)
Q Consensus       106 ~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v  185 (205)
                      .+.+++++.+...+++||+++||+|..|+++|.|+++++++++|++..++.+.+++++.   .+|.+||+++|+++.+++
T Consensus       280 ~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~---~~p~~vl~~~~~~~~~~~  356 (367)
T TIGR03404       280 TVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLA---LTPPQLVAAHLNLDDEVI  356 (367)
T ss_pred             EEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHh---hCCHHHHHHHhCcCHHHH
Confidence            99887777678999999999999999999999999999999999999999998877664   589999999999999999


Q ss_pred             HHhhhc
Q 042644          186 RVSEMS  191 (205)
Q Consensus       186 ~~l~~~  191 (205)
                      ++|++.
T Consensus       357 ~~l~~~  362 (367)
T TIGR03404       357 DSLKKE  362 (367)
T ss_pred             Hhcccc
Confidence            999865

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PLN00212 glutelin; Provisional

Probab=99.94  E-value=1.6e-25  Score=203.84  Aligned_cols=145  Identities=19%  Similarity=0.250  Sum_probs=128.6

Q ss_pred             CCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC-CeEEEEEEcCC
Q 042644           45 GDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAG  122 (205)
Q Consensus        45 ~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~l~~G  122 (205)
                      .++ ++. +|+++.+++.+||+|+.+++++.+++|.+|++.+||||++|+|++||++|++++++++++ ++++..+|++|
T Consensus       322 ad~y~~~-~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~G  400 (493)
T PLN00212        322 ADTYNPR-AGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPG  400 (493)
T ss_pred             cCccCCC-ceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCC
Confidence            445 888 999999999999999999999999999999999999999999999999999999999877 57889999999


Q ss_pred             CEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCC
Q 042644          123 EVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHF  193 (205)
Q Consensus       123 Dv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~  193 (205)
                      |+++||+|.+|.... +++.+.++++.++.++-...++  .++|+  .+|.+||++||+++++++++|+.+..
T Consensus       401 dvfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~--alp~eVla~Af~is~eea~~lk~n~~  470 (493)
T PLN00212        401 QLLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFR--ALPVDVIANAYRISREEARRLKNNRG  470 (493)
T ss_pred             CEEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHH--hCCHHHHHHHcCCCHHHHHHHHhccc
Confidence            999999999999865 5677888887766665444443  57888  79999999999999999999998853

>PLN00212 glutelin; Provisional

Probab=99.93  E-value=3.7e-25  Score=201.40  Aligned_cols=147  Identities=14%  Similarity=0.223  Sum_probs=126.5

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-----------------
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-----------------  114 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-----------------  114 (205)
                      ||.+..|+ .+.+.|.+.|+++.|++|+|+|+++||+| ++++++||++|++.++++.|++..                 
T Consensus        62 ~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~  139 (493)
T PLN00212         62 AGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQS  139 (493)
T ss_pred             CceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccc
Confidence            77666665 67899999999999999999999999999 999999999999999999875321                 


Q ss_pred             --------EEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCc--------eeeccc-----------------
Q 042644          115 --------FQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPG--------VVSISD-----------------  161 (205)
Q Consensus       115 --------~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg--------~~~~~~-----------------  161 (205)
                              ..+.+++||+++||+|++||++|.|+++++++++++..++.        .|.++.                 
T Consensus       140 ~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~~~  219 (493)
T PLN00212        140 QKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQHS  219 (493)
T ss_pred             cccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccccc
Confidence                    02699999999999999999999999999999888755432        344433                 


Q ss_pred             --cccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEee
Q 042644          162 --AAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMK  202 (205)
Q Consensus       162 --~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~~  202 (205)
                        ++|+  +|++++|++||+++.+++++|++++|++|.|+=++
T Consensus       220 ~~nifs--GF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~  260 (493)
T PLN00212        220 GQNIFS--GFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVK  260 (493)
T ss_pred             cCchhh--cCCHHHHHHHHCCCHHHHHHHhccccCCccEEEEC
Confidence              4888  99999999999999999999999999998887554

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.92  E-value=9.6e-25  Score=170.16  Aligned_cols=125  Identities=28%  Similarity=0.398  Sum_probs=107.0

Q ss_pred             CCCCCeeEEEeccCCCCCCCcc-ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-----eEEEEE--E
Q 042644           48 DKFPYSSLTLVTAADFPGLNTL-GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-----QVFQVM--L  119 (205)
Q Consensus        48 ~~~~g~~~~~~~~~~~P~l~~~-gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-----~~~~~~--l  119 (205)
                      +.. +|+++.++..++|.+... ++++.+..++||++.+|||| +++|+.||++|+++++++.+++     +....+  +
T Consensus        11 ~~~-~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l   88 (144)
T PF00190_consen   11 SNE-GGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRL   88 (144)
T ss_dssp             EET-TEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEE
T ss_pred             cCC-CEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeee
Confidence            455 889999999999965444 56677777899999999999 9999999999999999999876     355666  9


Q ss_pred             cCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHH
Q 042644          120 KAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTI  185 (205)
Q Consensus       120 ~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v  185 (205)
                      ++||++++|+|.+||++|.++++...+.+|++.++...           +++++++++|+++++++
T Consensus        89 ~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~-----------l~~~v~~~~F~~~~~~~  143 (144)
T PF00190_consen   89 KAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ-----------LPPEVLAKAFFLSGEEV  143 (144)
T ss_dssp             ETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE-----------SSHHHHHHHEESSHHHH
T ss_pred             ecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc-----------CCcHHHHHhcCCCcCcC
Confidence            99999999999999999999888888888888877764           68999999999998775

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.90  E-value=4.4e-23  Score=183.17  Aligned_cols=133  Identities=20%  Similarity=0.218  Sum_probs=117.8

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~  131 (205)
                      ||+++.++..+||++++  +++.++++.||++.++||| ++.|++||++|++++++++++++.+...|++||+++||+|.
T Consensus        50 gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~  126 (367)
T TIGR03404        50 GGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGI  126 (367)
T ss_pred             CceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCC
Confidence            88999999999999984  7999999999999999999 57899999999999999988788777799999999999999


Q ss_pred             eeEEEecCCccEEEEEEEeCCC---CceeeccccccCCCCCCHHHHHhhcCCCHHHHHHhhhc
Q 042644          132 LHFGFNVGYEFATVFSVLNSQN---PGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMS  191 (205)
Q Consensus       132 ~H~~~N~g~~~a~~l~~~~s~~---pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~l~~~  191 (205)
                      +|+++|.+ +.++++.+|++..   +..+.+..+ |+  .+|.+||+++|+++++++++|++.
T Consensus       127 ~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~--~~p~~Vla~~f~l~~~~~~~l~~~  185 (367)
T TIGR03404       127 PHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LA--HTPKDVLAKNFGVPESAFDNLPLK  185 (367)
T ss_pred             eEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HH--hCCHHHHHHHhCCCHHHHHhcccc
Confidence            99999985 5678888888764   445556554 55  589999999999999999999865

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>smart00835 Cupin_1 Cupin

Probab=99.88  E-value=3.2e-21  Score=150.61  Aligned_cols=134  Identities=31%  Similarity=0.525  Sum_probs=115.7

Q ss_pred             CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC-CeEEEEEEcCCCEEE
Q 042644           48 DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEVCV  126 (205)
Q Consensus        48 ~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~l~~GDv~~  126 (205)
                      +.. ||++..++..++|.+++.++.+.+++++||+..++|||++..|++||++|++.+.+.+.+ ++.....+++||+++
T Consensus         8 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~   86 (146)
T smart00835        8 SNE-GGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV   86 (146)
T ss_pred             cCC-CceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence            444 889999999999999999999999999999999999998889999999999999987653 355689999999999


Q ss_pred             eCCCCeeEEEecCCccEEEEEEEeCCCCcee-ec--cccccCCCCCCHHHHHhhcCCCHHHH
Q 042644          127 FPRGLLHFGFNVGYEFATVFSVLNSQNPGVV-SI--SDAAFSDFDTIDDLVRKFIPFLCWTI  185 (205)
Q Consensus       127 vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~-~~--~~~~f~~~~~~~evLa~af~v~~~~v  185 (205)
                      +|+|..|++.|.+++++++++ +.+++|..- .+  ..++|.  ++++++++++|+++++++
T Consensus        87 ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  145 (146)
T smart00835       87 VPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLR--GLPPEVLAAAFGVSAEEV  145 (146)
T ss_pred             ECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhh--cCCHHHHHHHhCcChHHc
Confidence            999999999999999999885 656665432 22  246777  899999999999999765

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.74  E-value=4.9e-17  Score=132.54  Aligned_cols=146  Identities=21%  Similarity=0.165  Sum_probs=119.0

Q ss_pred             CCCCceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCe--EEEEEecEEEEEEEe
Q 042644           32 FASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASE--MLFVFKGVVIAGFVD  109 (205)
Q Consensus        32 ~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E--i~yVl~G~~~v~~~~  109 (205)
                      ..+||+|..+.....  .. ||.+.......+|+-     +...+.+.||++...||||++.|  |.||++|++++.+.+
T Consensus        49 ~~~~~~yel~~~~~~--~~-~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~  120 (209)
T COG2140          49 KEDDFVYELLESEPG--ER-GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK  120 (209)
T ss_pred             CCCceEEEeeccccc--cc-CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence            567787776644322  22 668888777788775     56678899999999999999999  999999999999999


Q ss_pred             CCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHHHHh
Q 042644          110 TNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVS  188 (205)
Q Consensus       110 ~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~l  188 (205)
                      ++|+.....+++||+++||++..|+..|+|++|++++.++....+....+....+   +.+..+++..++.+....+..
T Consensus       121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~---~~~~~~~~~~~~~~~~~~D~p  196 (209)
T COG2140         121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLG---GMPPVLVENGLNKNPKYVDVP  196 (209)
T ss_pred             CCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhc---cCCceeeccccccCcccccCc
Confidence            8898889999999999999999999999999999999999888777766655444   456777777777776555443

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.50  E-value=9.7e-14  Score=94.46  Aligned_cols=70  Identities=30%  Similarity=0.441  Sum_probs=63.5

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      +++++||+..++|+|+...|++||++|++.+.+   +++  ...+++||.+++|+|..|...|.++++++++.++
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            578999999999999877799999999999884   455  7999999999999999999999999999998875

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=2.6e-12  Score=98.22  Aligned_cols=81  Identities=22%  Similarity=0.233  Sum_probs=72.3

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      +...++.++.+.||+...+|.|.+..|++||++|++.+.+   +++  ...|++||+++||+|..|.+.|.|..++.++.
T Consensus        33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~lie  107 (127)
T COG0662          33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIE  107 (127)
T ss_pred             CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCcceEEEE
Confidence            3478999999999999888888888999999999999987   344  79999999999999999999999999999998


Q ss_pred             EEeCCC
Q 042644          148 VLNSQN  153 (205)
Q Consensus       148 ~~~s~~  153 (205)
                      +-....
T Consensus       108 i~~p~~  113 (127)
T COG0662         108 VQSPPY  113 (127)
T ss_pred             EecCCc
Confidence            765444

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.43  E-value=2e-12  Score=98.93  Aligned_cols=84  Identities=25%  Similarity=0.337  Sum_probs=72.0

Q ss_pred             CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644           63 FPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus        63 ~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~  142 (205)
                      ++...+..+++.++.++||+..+.|+||...+.+||++|++++++.   ++  .+.+++||++++|+|..|+..|.++.+
T Consensus        35 ~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~--~~~l~~Gd~i~ip~g~~H~~~a~~~~~  109 (131)
T COG1917          35 LPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GE--KKELKAGDVIIIPPGVVHGLKAVEDEP  109 (131)
T ss_pred             ccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CC--ceEecCCCEEEECCCCeeeeccCCCCc
Confidence            3444566789999999999999999998667999999999999974   33  799999999999999999999999887


Q ss_pred             EEEEEEEeC
Q 042644          143 ATVFSVLNS  151 (205)
Q Consensus       143 a~~l~~~~s  151 (205)
                      ...++++..
T Consensus       110 ~~~l~v~~~  118 (131)
T COG1917         110 MVLLLVFPL  118 (131)
T ss_pred             eeEEEEeee
Confidence            666666654

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=99.42  E-value=6.1e-12  Score=102.56  Aligned_cols=98  Identities=20%  Similarity=0.190  Sum_probs=81.0

Q ss_pred             eEEEeccCCCCCCCccceEEEEEEEcCCcc------cCCccCCCC--CeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEE
Q 042644           54 SLTLVTAADFPGLNTLGLSVARTDLDVDGM------VVPHTHPRA--SEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVC  125 (205)
Q Consensus        54 ~~~~~~~~~~P~l~~~gis~~~~~l~pgg~------~~pH~Hp~a--~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~  125 (205)
                      -+..+.. ..|.+...++.+....+.||..      .+.|+|+..  .|++||++|++.+.+.+.++......+++||++
T Consensus        52 ~~Y~v~~-~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v  130 (191)
T PRK04190         52 VVYEVYA-IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVV  130 (191)
T ss_pred             eEEEEEE-ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEE
Confidence            3444443 3455666689999999999996      567999855  499999999999988766555567899999999


Q ss_pred             EeCCCCeeEEEecCCccEEEEEEEeCC
Q 042644          126 VFPRGLLHFGFNVGYEFATVFSVLNSQ  152 (205)
Q Consensus       126 ~vP~G~~H~~~N~g~~~a~~l~~~~s~  152 (205)
                      +||+|..|.+.|.|++++++++++...
T Consensus       131 ~IPpg~~H~~iN~G~epl~fl~v~p~~  157 (191)
T PRK04190        131 YVPPYWAHRSVNTGDEPLVFLACYPAD  157 (191)
T ss_pred             EECCCCcEEeEECCCCCEEEEEEEcCC
Confidence            999999999999999999999988543

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.38  E-value=7.8e-12  Score=95.51  Aligned_cols=82  Identities=15%  Similarity=0.141  Sum_probs=69.8

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .++++.+++++||+..+.|+|.. .|+.||++|++++..++ +++  ++.|++||++++|++..|++.|.  ++++++++
T Consensus        33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~-~g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v  106 (125)
T PRK13290         33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLA-TGE--VHPIRPGTMYALDKHDRHYLRAG--EDMRLVCV  106 (125)
T ss_pred             CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcC-CCE--EEEeCCCeEEEECCCCcEEEEcC--CCEEEEEE
Confidence            46899999999999999999955 69999999999988321 244  79999999999999999999997  89999999


Q ss_pred             EeCCCCce
Q 042644          149 LNSQNPGV  156 (205)
Q Consensus       149 ~~s~~pg~  156 (205)
                      ++...+|.
T Consensus       107 ~tP~~~~~  114 (125)
T PRK13290        107 FNPPLTGR  114 (125)
T ss_pred             ECCCCCCc
Confidence            87655553

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.24  E-value=7.4e-11  Score=92.10  Aligned_cols=82  Identities=20%  Similarity=0.282  Sum_probs=69.3

Q ss_pred             CCCccceEEEEEEEcCCcc-cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCC--CeeEEEecCCc
Q 042644           65 GLNTLGLSVARTDLDVDGM-VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRG--LLHFGFNVGYE  141 (205)
Q Consensus        65 ~l~~~gis~~~~~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G--~~H~~~N~g~~  141 (205)
                      +|.  .+.+....++||+. ...|||....|++|||+|++++.+   ++.  ...|++||++-||+|  ..|.+.|.|+.
T Consensus        38 Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~--e~~lrpGD~~gFpAG~~~aHhliN~s~~  110 (161)
T COG3837          38 GLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGG--ETRLRPGDSAGFPAGVGNAHHLINRSDV  110 (161)
T ss_pred             Chh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCe--eEEecCCceeeccCCCcceeEEeecCCc
Confidence            555  45666777999995 588999999999999999999876   333  689999999999999  99999999999


Q ss_pred             cEEEEEEEeCCC
Q 042644          142 FATVFSVLNSQN  153 (205)
Q Consensus       142 ~a~~l~~~~s~~  153 (205)
                      .++.|.+-+...
T Consensus       111 ~~~yL~vG~r~~  122 (161)
T COG3837         111 ILRYLEVGTREP  122 (161)
T ss_pred             eEEEEEeccccc
Confidence            999998765443

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.19  E-value=1.8e-10  Score=86.03  Aligned_cols=85  Identities=15%  Similarity=0.232  Sum_probs=74.7

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .++.+..++++||+-.-.|.|-+....+||++|+.++++.   +++ +..++++||+++||+|++|.-.|.+++++.++.
T Consensus        44 s~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G---~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vI  120 (142)
T COG4101          44 SGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG---NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVI  120 (142)
T ss_pred             ceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec---cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEE
Confidence            3788999999999999999998888889999999999983   453 467899999999999999999999999999998


Q ss_pred             EEeCCCCce
Q 042644          148 VLNSQNPGV  156 (205)
Q Consensus       148 ~~~s~~pg~  156 (205)
                      +.+..++..
T Consensus       121 aRsDp~~~E  129 (142)
T COG4101         121 ARSDPNPQE  129 (142)
T ss_pred             EccCCCCCc
Confidence            888766653

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.18  E-value=4e-10  Score=103.46  Aligned_cols=79  Identities=18%  Similarity=0.188  Sum_probs=71.3

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      +.++.+.+++++||+..++|+|+...|.+||++|++++.+   +++  +..|++||.+++|+|..|.+.|.|+++++++.
T Consensus       373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~---dg~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~  447 (468)
T TIGR01479       373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI---GDE--TLLLTENESTYIPLGVIHRLENPGKIPLELIE  447 (468)
T ss_pred             CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence            3368999999999998899999888999999999999987   455  78999999999999999999999999999999


Q ss_pred             EEeC
Q 042644          148 VLNS  151 (205)
Q Consensus       148 ~~~s  151 (205)
                      +...
T Consensus       448 v~~~  451 (468)
T TIGR01479       448 VQSG  451 (468)
T ss_pred             EEcC
Confidence            8753

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=99.13  E-value=1.1e-09  Score=86.18  Aligned_cols=86  Identities=22%  Similarity=0.273  Sum_probs=74.8

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~  131 (205)
                      .|+.+.+..       +.++.+-++.+.||..+..|.|....|.++|++|++.+.+   +++  ...+++||.+.||+|.
T Consensus        51 WG~~~~l~~-------~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~~--~~~~~~g~sv~Ip~g~  118 (151)
T PF01050_consen   51 WGSYEVLDE-------GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DDE--EFTLKEGDSVYIPRGA  118 (151)
T ss_pred             CcEEEEEEc-------cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CCE--EEEEcCCCEEEECCCC
Confidence            446665553       3478899999999999999999989999999999999987   455  7899999999999999


Q ss_pred             eeEEEecCCccEEEEEEE
Q 042644          132 LHFGFNVGYEFATVFSVL  149 (205)
Q Consensus       132 ~H~~~N~g~~~a~~l~~~  149 (205)
                      .|.+.|.|+.++.++-+-
T Consensus       119 ~H~i~n~g~~~L~~IEVq  136 (151)
T PF01050_consen  119 KHRIENPGKTPLEIIEVQ  136 (151)
T ss_pred             EEEEECCCCcCcEEEEEe
Confidence            999999999999998764

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PRK11171 hypothetical protein; Provisional

Probab=99.13  E-value=1.4e-09  Score=93.11  Aligned_cols=78  Identities=19%  Similarity=0.154  Sum_probs=68.3

Q ss_pred             ccceEEEEEEEcCCcccCCccCC-CCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHP-RASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      ...+.+.+++++||+....|+|+ ...|++||++|++++.+   +++  +..|++||.+++|++..|.+.|.|+++++++
T Consensus        58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l  132 (266)
T PRK11171         58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EGK--THALSEGGYAYLPPGSDWTLRNAGAEDARFH  132 (266)
T ss_pred             CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence            45789999999999987777775 55799999999999986   455  7999999999999999999999999999998


Q ss_pred             EEEe
Q 042644          147 SVLN  150 (205)
Q Consensus       147 ~~~~  150 (205)
                      ++..
T Consensus       133 ~v~~  136 (266)
T PRK11171        133 WIRK  136 (266)
T ss_pred             EEEc
Confidence            8764

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.12  E-value=7.4e-10  Score=101.77  Aligned_cols=78  Identities=18%  Similarity=0.125  Sum_probs=69.7

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      +.++.+.+++++||+....|+|....|.+||++|++++.+   +++  ++.|++||.+.+|+|.+|.+.|.|++++++|.
T Consensus       382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i---dg~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~  456 (478)
T PRK15460        382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI---DGD--IKLLGENESIYIPLGATHCLENPGKIPLDLIE  456 (478)
T ss_pred             CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence            4468999999999998777777777899999999999987   455  79999999999999999999999999999998


Q ss_pred             EEe
Q 042644          148 VLN  150 (205)
Q Consensus       148 ~~~  150 (205)
                      +..
T Consensus       457 V~~  459 (478)
T PRK15460        457 VRS  459 (478)
T ss_pred             EEc
Confidence            864

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=99.10  E-value=1.5e-09  Score=87.82  Aligned_cols=76  Identities=18%  Similarity=0.182  Sum_probs=64.4

Q ss_pred             cceEEEEEEEcCCccc-CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           69 LGLSVARTDLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ..+.+....++||+.. ..|+| ...|++||++|++.+.+   +++  .+.|++||.+++|++.+|.+.|.+++++++++
T Consensus       105 ~~~~~~~~~~~pg~~~~~~~~h-~~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~  178 (185)
T PRK09943        105 RTLAMIFETYQPGTTTGERIKH-QGEEIGTVLEGEIVLTI---NGQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS  178 (185)
T ss_pred             CeeEEEEEEccCCCCccccccc-CCcEEEEEEEeEEEEEE---CCE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence            3466777789999865 46677 56899999999999987   344  78999999999999999999999999999888


Q ss_pred             EEe
Q 042644          148 VLN  150 (205)
Q Consensus       148 ~~~  150 (205)
                      +..
T Consensus       179 ~~~  181 (185)
T PRK09943        179 AHT  181 (185)
T ss_pred             EeC
Confidence            754

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=99.06  E-value=1.8e-09  Score=92.08  Aligned_cols=75  Identities=13%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             ceEEEEEEEcCCcccCC-ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVP-HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        70 gis~~~~~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ++.+.+++++||+..+. |.| ...|.+||++|++.+..   +++  +..+++||++++|++.+||++|.|++++++|.-
T Consensus       178 ~~~~~~~~~~PG~~~~~~~~H-~~eh~~yiL~G~G~~~~---~g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y  251 (260)
T TIGR03214       178 DMNVHILSFEPGASHPYIETH-VMEHGLYVLEGKGVYNL---DNN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY  251 (260)
T ss_pred             CcEEEEEEECCCcccCCcccc-cceeEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence            67888899999999985 666 56688899999999875   455  799999999999999999999999999998865


Q ss_pred             Ee
Q 042644          149 LN  150 (205)
Q Consensus       149 ~~  150 (205)
                      -+
T Consensus       252 kd  253 (260)
T TIGR03214       252 KD  253 (260)
T ss_pred             cc
Confidence            44

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.98  E-value=9.6e-09  Score=87.65  Aligned_cols=77  Identities=18%  Similarity=0.105  Sum_probs=66.3

Q ss_pred             cceEEEEEEEcCCccc-CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           69 LGLSVARTDLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ..+.+..++++||+-. .+|+|+...|++||++|++.+.+   +++  .+.|++||.+++|+|..|.+.|.++++++++.
T Consensus        56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~---~g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~  130 (260)
T TIGR03214        56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA---EGE--THELREGGYAYLPPGSKWTLANAQAEDARFFL  130 (260)
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence            4689999999998754 56667666899999999999886   354  68999999999999999999999999999988


Q ss_pred             EEe
Q 042644          148 VLN  150 (205)
Q Consensus       148 ~~~  150 (205)
                      +..
T Consensus       131 v~k  133 (260)
T TIGR03214       131 YKK  133 (260)
T ss_pred             EEe
Confidence            764

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=98.95  E-value=7.9e-09  Score=88.44  Aligned_cols=75  Identities=15%  Similarity=0.104  Sum_probs=66.4

Q ss_pred             ceEEEEEEEcCCcccCCc-cCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPH-THPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH-~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .+.+..++|+||+..+.| +| ...|.+||++|++++.+   +++  ++.|++||++.+|++..|++.|.|+++++++..
T Consensus       183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~---~~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~  256 (266)
T PRK11171        183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL---NND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY  256 (266)
T ss_pred             CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence            478999999999998885 56 67899999999999876   455  799999999999999999999999999998876


Q ss_pred             Ee
Q 042644          149 LN  150 (205)
Q Consensus       149 ~~  150 (205)
                      -+
T Consensus       257 k~  258 (266)
T PRK11171        257 KD  258 (266)
T ss_pred             cc
Confidence            55

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.86  E-value=4.3e-08  Score=79.29  Aligned_cols=86  Identities=23%  Similarity=0.236  Sum_probs=58.1

Q ss_pred             CCccceEEEEEEEcCCcc------cCCccCCC------CCeEEEEEecEEEEEEEeCCC----eEEEEEEcCCCEEEeCC
Q 042644           66 LNTLGLSVARTDLDVDGM------VVPHTHPR------ASEMLFVFKGVVIAGFVDTNR----QVFQVMLKAGEVCVFPR  129 (205)
Q Consensus        66 l~~~gis~~~~~l~pgg~------~~pH~Hp~------a~Ei~yVl~G~~~v~~~~~~~----~~~~~~l~~GDv~~vP~  129 (205)
                      |...++......+.||-+      ..-|+|+.      ..|+.+|++|++.+.+-+.++    +.+...+++||+++||+
T Consensus        45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp  124 (182)
T PF06560_consen   45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP  124 (182)
T ss_dssp             -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred             ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence            344467888888888763      35699998      789999999999999988877    67788999999999999


Q ss_pred             CCeeEEEecCCccEEEEEEEeC
Q 042644          130 GLLHFGFNVGYEFATVFSVLNS  151 (205)
Q Consensus       130 G~~H~~~N~g~~~a~~l~~~~s  151 (205)
                      +..|...|+|++++++.+...+
T Consensus       125 ~yaH~tIN~g~~~L~~~~~~~~  146 (182)
T PF06560_consen  125 GYAHRTINTGDEPLVFAAWVPR  146 (182)
T ss_dssp             T-EEEEEE-SSS-EEEEEEEET
T ss_pred             CceEEEEECCCCcEEEEEEEec
Confidence            9999999999999998887754

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.84  E-value=4.6e-08  Score=75.93  Aligned_cols=86  Identities=16%  Similarity=0.152  Sum_probs=56.3

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC----CeEEEEEEcCCCEEEeCCCCeeEEEecC-CccEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN----RQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFAT  144 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~----~~~~~~~l~~GDv~~vP~G~~H~~~N~g-~~~a~  144 (205)
                      .+.+.+-++.||.-.|+|.| ...|+++|++|+++..+..+.    |+..++.+.+++.+.||.+..|...|.+ .+++.
T Consensus        43 evEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq  121 (167)
T PF02041_consen   43 EVEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ  121 (167)
T ss_dssp             SEEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred             eeeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence            57899999999999999999 789999999999999887653    5667899999999999999999999999 48898


Q ss_pred             EEEEEeCCCCcee
Q 042644          145 VFSVLNSQNPGVV  157 (205)
Q Consensus       145 ~l~~~~s~~pg~~  157 (205)
                      ++++++. -|-..
T Consensus       122 vlViiSr-pPvkv  133 (167)
T PF02041_consen  122 VLVIISR-PPVKV  133 (167)
T ss_dssp             EEEEEES-SS--E
T ss_pred             EEEEecC-CCeEE
Confidence            8887754 44433

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.63  E-value=3e-07  Score=72.72  Aligned_cols=59  Identities=15%  Similarity=0.287  Sum_probs=49.0

Q ss_pred             cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC
Q 042644           79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG  139 (205)
Q Consensus        79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g  139 (205)
                      .||.....|.|+ ..|++|+++|++.+.+.+ +++.....|++||++++|+|+.|.....+
T Consensus        36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~flvP~gvpHsP~r~~   94 (159)
T TIGR03037        36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTE-EGKREDVPIREGDIFLLPPHVPHSPQRPA   94 (159)
T ss_pred             CCCCCcccccCC-CceEEEEEcceEEEEEEc-CCcEEEEEECCCCEEEeCCCCCcccccCC
Confidence            455556788885 799999999999999876 35555799999999999999999997643

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.62  E-value=2.5e-07  Score=74.28  Aligned_cols=69  Identities=13%  Similarity=0.165  Sum_probs=54.9

Q ss_pred             EEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           76 TDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        76 ~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      +.=.||.....|+|+ ..|++|+++|++.+.+.+ +++.....|++||++++|+|+.|..+..  +..+.+.+
T Consensus        39 vvgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi  107 (177)
T PRK13264         39 VVGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI  107 (177)
T ss_pred             EEccCCcccccccCC-CceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence            334677788889995 699999999999999987 4554578999999999999999999763  34444433

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.56  E-value=9e-07  Score=63.14  Aligned_cols=73  Identities=22%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .++...++|+|++.-++-.--+..-++||++|.+++.+.   +.  ++.+.+||.+.||+|-.-.+.|.++++|+++-
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~---~~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF   83 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIH---ET--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF   83 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEET---TE--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEc---Cc--EEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence            578889999999987664443778899999999999983   33  78999999999999999999999999998764

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.55  E-value=4.9e-07  Score=67.29  Aligned_cols=63  Identities=22%  Similarity=0.284  Sum_probs=45.8

Q ss_pred             CCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           80 VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        80 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ++-..++|+| +.-|+.||++|++.+.+   +++  .+.+++||++++|+|..|.....++++...+.+
T Consensus        12 ~~~~~~~h~h-~~~~i~~v~~G~~~~~~---~~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i   74 (136)
T PF02311_consen   12 PNFEFPPHWH-DFYEIIYVLSGEGTLHI---DGQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWI   74 (136)
T ss_dssp             TT-SEEEETT--SEEEEEEEEE-EEEEE---TTE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE
T ss_pred             CCCccCCEEC-CCEEEEEEeCCEEEEEE---CCE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEE
Confidence            4456789999 57899999999999876   455  799999999999999999998877666665554

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=98.54  E-value=7.4e-07  Score=70.61  Aligned_cols=67  Identities=16%  Similarity=0.271  Sum_probs=50.0

Q ss_pred             ccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEe
Q 042644           83 MVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus        83 ~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~  150 (205)
                      +...|.| ...|+-|+++|++.+.+...+++..+..+++||++++|+|..||+.-..+..++++=.|.
T Consensus        84 f~~EH~H-~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~  150 (157)
T PF03079_consen   84 FFEEHTH-EDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK  150 (157)
T ss_dssp             HCS-EEE-SS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred             hheeEec-ChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence            4478999 568999999999999999877776678999999999999999999755455666665553

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.44  E-value=2.8e-06  Score=70.76  Aligned_cols=72  Identities=14%  Similarity=0.083  Sum_probs=53.5

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      +..|++..+.++..   ..+||.+..|+.||++|++++.+   +++  .+.+++||++++|+|..|.+.+.+  .++++.
T Consensus       154 ~s~m~aGf~~~~~~---sf~wtl~~dEi~YVLEGe~~l~I---dG~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRfly  223 (233)
T PRK15457        154 GSSMAAGFMQWENA---FFPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLY  223 (233)
T ss_pred             CCceeeEEEEEecC---ccceeccceEEEEEEEeEEEEEE---CCE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEE
Confidence            33566666666652   23477788999999999999987   455  799999999999999995554443  555555


Q ss_pred             EE
Q 042644          148 VL  149 (205)
Q Consensus       148 ~~  149 (205)
                      +.
T Consensus       224 V~  225 (233)
T PRK15457        224 VA  225 (233)
T ss_pred             EE
Confidence            44

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.43  E-value=2.2e-06  Score=68.04  Aligned_cols=71  Identities=18%  Similarity=0.288  Sum_probs=58.2

Q ss_pred             CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCcee
Q 042644           85 VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVV  157 (205)
Q Consensus        85 ~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~  157 (205)
                      .-|.| ...|+-|++.|++.+.+..++++.+...+.+||++.+|+|.-||+.-..+...+++=.|+ ..+|.+
T Consensus        89 ~EH~H-~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWV  159 (181)
T COG1791          89 QEHLH-TDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWV  159 (181)
T ss_pred             HHhcc-CCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCce
Confidence            56999 678999999999999999988899999999999999999999999754455555555553 445554

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=98.40  E-value=6.3e-07  Score=64.38  Aligned_cols=80  Identities=20%  Similarity=0.230  Sum_probs=58.1

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~  131 (205)
                      |.++..+....    ...+..+..+.++||+..|.|.|+ ..|.+|||+|++..    .+     ..+.+||.+..|+|.
T Consensus         9 Gv~~~~L~~~~----~~~g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~~-----~~~~~G~~~~~p~g~   74 (91)
T PF12973_consen    9 GVSVKPLHRDE----GETGERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----GD-----GRYGAGDWLRLPPGS   74 (91)
T ss_dssp             TEEEEEEEECS----SSTTEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----TT-----CEEETTEEEEE-TTE
T ss_pred             CEEEEEeccCC----CcccCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----CC-----ccCCCCeEEEeCCCC
Confidence            65666655322    123678889999999999999994 57888999999973    12     356999999999999


Q ss_pred             eeEEEecCCccEEEEE
Q 042644          132 LHFGFNVGYEFATVFS  147 (205)
Q Consensus       132 ~H~~~N~g~~~a~~l~  147 (205)
                      .|....  ++.+.++.
T Consensus        75 ~h~~~s--~~gc~~~v   88 (91)
T PF12973_consen   75 SHTPRS--DEGCLILV   88 (91)
T ss_dssp             EEEEEE--SSCEEEEE
T ss_pred             ccccCc--CCCEEEEE
Confidence            999984  55566554

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=98.38  E-value=1.2e-06  Score=72.72  Aligned_cols=74  Identities=18%  Similarity=0.179  Sum_probs=63.4

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      +..+..+.++||+.+|.|.| ...|+.+|++|+..    ++     ...+.+||++..|.|..|...+.+++++.++++.
T Consensus       126 ~~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f~----de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~  195 (215)
T TIGR02451       126 NARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAFS----DE-----TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL  195 (215)
T ss_pred             CcEEEEEEECCCCccCCCcC-CCcEEEEEEEEEEE----cC-----CCccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence            35778889999999999999 67899999999963    32     3578999999999999999999988999999988


Q ss_pred             eCCC
Q 042644          150 NSQN  153 (205)
Q Consensus       150 ~s~~  153 (205)
                      +...
T Consensus       196 dapl  199 (215)
T TIGR02451       196 DAPL  199 (215)
T ss_pred             cCCc
Confidence            7543

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=98.36  E-value=2e-06  Score=74.74  Aligned_cols=63  Identities=21%  Similarity=0.132  Sum_probs=51.8

Q ss_pred             EEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           72 SVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        72 s~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      .++...-.|..+.++||| +.-|+.|+++|++.+.+   +++  ...+++||++++++|.+|.+...++
T Consensus        27 ~~~~~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i---~g~--~~~l~~Gd~ili~s~~~H~~~~~~~   89 (302)
T PRK10371         27 RLEIEFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLI---NNE--KVQINQGHITLFWACTPHQLTDPGN   89 (302)
T ss_pred             eeEEEeeCCCCCCCCCcc-ccEEEEEecCCcEEEEE---CCE--EEEEcCCcEEEEecCCcccccccCC
Confidence            344455677788999999 67899999999998776   455  7899999999999999998765443

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=98.32  E-value=1.7e-06  Score=76.31  Aligned_cols=77  Identities=19%  Similarity=0.168  Sum_probs=65.4

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      .|.+..-.|.||...++|.| .+.-+.+|++|++....++  ++  ....++||+|++|.+.+|...|.|++++.++.++
T Consensus        80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V~--g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l  154 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAVD--GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL  154 (335)
T ss_pred             hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEEC--CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence            45566667999999999999 6778999999999655554  55  7899999999999999999999999998887776


Q ss_pred             eC
Q 042644          150 NS  151 (205)
Q Consensus       150 ~s  151 (205)
                      |.
T Consensus       155 D~  156 (335)
T TIGR02272       155 DI  156 (335)
T ss_pred             CH
Confidence            63

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=98.27  E-value=2.9e-06  Score=65.11  Aligned_cols=66  Identities=23%  Similarity=0.282  Sum_probs=54.5

Q ss_pred             Ccc-cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           81 DGM-VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        81 gg~-~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      |++ .-.|||.++.|++.|++|++.+.+..++|+  ...+++||++++|+|+-|.-. ..+.+..++..+
T Consensus        52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~rl-~sS~DF~VvGaY  118 (163)
T COG4297          52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCRL-HSSADFQVVGAY  118 (163)
T ss_pred             ccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCcccccc-cCCCCeEEEccc
Confidence            443 356999999999999999999999888887  789999999999999999873 455666666554

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=98.24  E-value=1.7e-05  Score=60.03  Aligned_cols=83  Identities=16%  Similarity=0.164  Sum_probs=72.9

Q ss_pred             CccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           67 NTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        67 ~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      .+.|+|+..-.+.+|.....||- +.-|-+|+++|++++...+ +|+  .+.+++|.+++..+.-.|+.+..  ++++++
T Consensus        31 DgmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~--~dm~~v  104 (126)
T PF06339_consen   31 DGMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAK--TDMRLV  104 (126)
T ss_pred             CCCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEec--CCEEEE
Confidence            46799999999999999999988 7899999999999998765 465  79999999999999999999864  389999


Q ss_pred             EEEeCCCCc
Q 042644          147 SVLNSQNPG  155 (205)
Q Consensus       147 ~~~~s~~pg  155 (205)
                      ++||.+--|
T Consensus       105 CVFnPpltG  113 (126)
T PF06339_consen  105 CVFNPPLTG  113 (126)
T ss_pred             EEcCCCCcC
Confidence            999876544

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=98.22  E-value=1.2e-05  Score=68.51  Aligned_cols=52  Identities=25%  Similarity=0.402  Sum_probs=44.3

Q ss_pred             CcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec
Q 042644           81 DGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV  138 (205)
Q Consensus        81 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~  138 (205)
                      +...++||| +..|++||++|++.+.+   +++  ...+++||++++|+|..|.....
T Consensus        33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~--~~~l~~g~l~~i~p~~~H~~~~~   84 (278)
T PRK10296         33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NGK--RVLLERGDFVFIPLGSHHQSFYE   84 (278)
T ss_pred             hcCCCCccc-ccEEEEEEEeceEEEEE---CCE--EEEECCCcEEEeCCCCccceeee
Confidence            345689999 78899999999999876   455  68999999999999999976544

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=98.19  E-value=3.9e-05  Score=59.00  Aligned_cols=95  Identities=18%  Similarity=0.140  Sum_probs=54.1

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEE-EcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCC-CEEEeCC
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTD-LDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAG-EVCVFPR  129 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~-l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~G-Dv~~vP~  129 (205)
                      .|.++.+...+...+.  --.+..+. .++|.....|+|....|+++|++|+..+.+.+. .+..++.|..- ..+.+|+
T Consensus        15 RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~-~~~~~~~L~~~~~~L~Ipp   91 (131)
T PF05523_consen   15 RGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDG-REEEEFILDEPNKGLYIPP   91 (131)
T ss_dssp             TEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-S-S-EEEEEE--TTEEEEE-T
T ss_pred             CCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecC-CCcEEEEECCCCeEEEECC
Confidence            4577777765432222  12344443 445556999999999999999999999997663 33357777655 4899999


Q ss_pred             CCeeEEEecCCccEEEEEEEeC
Q 042644          130 GLLHFGFNVGYEFATVFSVLNS  151 (205)
Q Consensus       130 G~~H~~~N~g~~~a~~l~~~~s  151 (205)
                      |.+|.+.|.+.. +++++ +.+
T Consensus        92 g~w~~~~~~s~~-svlLv-~as  111 (131)
T PF05523_consen   92 GVWHGIKNFSED-SVLLV-LAS  111 (131)
T ss_dssp             T-EEEEE---TT--EEEE-EES
T ss_pred             chhhHhhccCCC-cEEEE-EcC
Confidence            999999999766 66554 444

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PRK13500 transcriptional activator RhaR; Provisional

Probab=98.13  E-value=1.4e-05  Score=69.67  Aligned_cols=56  Identities=18%  Similarity=0.216  Sum_probs=46.8

Q ss_pred             cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      -|....++||| +..|++||++|++...+   +++  .+.+++||+++||+|..|.+....+
T Consensus        56 ~~~~~~~~H~H-~~~el~~v~~G~g~~~v---~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~  111 (312)
T PRK13500         56 YPQDVFAEHTH-DFCELVIVWRGNGLHVL---NDR--PYRITRGDLFYIHADDKHSYASVND  111 (312)
T ss_pred             CCCCCCCcccc-ceEEEEEEEcCeEEEEE---CCE--EEeecCCeEEEECCCCeecccccCC
Confidence            34445789999 68899999999999876   454  7999999999999999999876444

>PRK13501 transcriptional activator RhaR; Provisional

Probab=98.10  E-value=1.4e-05  Score=68.57  Aligned_cols=56  Identities=21%  Similarity=0.229  Sum_probs=46.6

Q ss_pred             cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      .+..-.++||| +..|++||++|++++.+   +++  .+.+++||+++||+|.+|.+...++
T Consensus        26 ~~~~~~~~H~H-~~~ei~~i~~G~~~~~i---~~~--~~~l~~g~~~~I~p~~~H~~~~~~~   81 (290)
T PRK13501         26 YPQETFVEHTH-QFCEIVIVWRGNGLHVL---NDH--PYRITCGDVFYIQAADHHSYESVHD   81 (290)
T ss_pred             CCCCCCccccc-cceeEEEEecCceEEEE---CCe--eeeecCCeEEEEcCCCcccccccCC
Confidence            34445679999 68899999999999886   454  7999999999999999999875443

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.01  E-value=1.1e-05  Score=69.44  Aligned_cols=94  Identities=21%  Similarity=0.201  Sum_probs=74.9

Q ss_pred             eEEEeccCCCCCCCccc-e----EEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644           54 SLTLVTAADFPGLNTLG-L----SVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP  128 (205)
Q Consensus        54 ~~~~~~~~~~P~l~~~g-i----s~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP  128 (205)
                      .++.+-..+.|+|++.. +    -+..--|-||.+.|.|.| +..-+-+|++|++-..+++  |+  ...+++||+++.|
T Consensus        70 a~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrH-sqsAlRFvveG~Ga~T~Vd--Ge--r~~M~~GDfilTP  144 (351)
T COG3435          70 AVRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRH-NQSALRFVVEGKGAYTVVD--GE--RTPMEAGDFILTP  144 (351)
T ss_pred             ceeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccc-cccceEEEEeccceeEeec--Cc--eeeccCCCEEEcc
Confidence            44455556778887663 1    122234789999999999 6678999999999888886  43  5889999999999


Q ss_pred             CCCeeEEEecCCccEEEEEEEeCC
Q 042644          129 RGLLHFGFNVGYEFATVFSVLNSQ  152 (205)
Q Consensus       129 ~G~~H~~~N~g~~~a~~l~~~~s~  152 (205)
                      ++.+|.--|.|++|++++-.++..
T Consensus       145 ~w~wHdHgn~g~eP~iWlDgLDip  168 (351)
T COG3435         145 AWTWHDHGNEGTEPCIWLDGLDIP  168 (351)
T ss_pred             CceeccCCCCCCCceEEEcccchH
Confidence            999999999999999998877643

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=97.99  E-value=1.2e-05  Score=68.24  Aligned_cols=74  Identities=23%  Similarity=0.184  Sum_probs=47.6

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      ..|-+..++.+++|-..|||+| ++++-+||++|.+..+    +.+....-|.+|..+..|+|..|.....+++.+.++
T Consensus        33 ~~g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~  106 (251)
T PF14499_consen   33 KDGPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI  106 (251)
T ss_dssp             TTS-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred             cCCcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC----CCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence            3478999999999999999999 7899999999987653    334345679999999999999999876665555443

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=97.97  E-value=2.7e-05  Score=66.28  Aligned_cols=59  Identities=12%  Similarity=0.027  Sum_probs=47.5

Q ss_pred             CCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccE
Q 042644           80 VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA  143 (205)
Q Consensus        80 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a  143 (205)
                      -+...++|||.+.-|++|+++|++.+.+   +++  ...+++||++++|+|..|.+...++...
T Consensus        32 ~~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~   90 (287)
T TIGR02297        32 FGRNMPVHFHDRYYQLHYLTEGSIALQL---DEH--EYSEYAPCFFLTPPSVPHGFVTDLDADG   90 (287)
T ss_pred             cCCCCCCcccccceeEEEEeeCceEEEE---CCE--EEEecCCeEEEeCCCCccccccCCCcce
Confidence            3456899999546899999999998776   344  6899999999999999999876544333

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PRK13502 transcriptional activator RhaR; Provisional

Probab=97.97  E-value=3.9e-05  Score=65.32  Aligned_cols=56  Identities=18%  Similarity=0.224  Sum_probs=46.5

Q ss_pred             cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      .|+...++||| +..|++||++|++.+.+   +++  .+.+++||++++|+|.+|.+...++
T Consensus        26 ~~~~~~~~H~h-~~~~l~~v~~G~~~~~i---~~~--~~~l~~g~l~li~~~~~H~~~~~~~   81 (282)
T PRK13502         26 YPQDVFAEHTH-EFCELVMVWRGNGLHVL---NER--PYRITRGDLFYIRAEDKHSYTSVND   81 (282)
T ss_pred             CCCCCCCcccc-ceEEEEEEecCcEEEEE---CCE--EEeecCCcEEEECCCCcccccccCC
Confidence            44455789999 68899999999999886   455  7999999999999999999865443

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.88  E-value=6.1e-05  Score=52.17  Aligned_cols=60  Identities=18%  Similarity=0.185  Sum_probs=44.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF  136 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~  136 (205)
                      .++.......||.. ..++.  ..|++|||+|++++..  .+++  ..++++||++++|+|..-.+.
T Consensus         6 ~~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~--~~G~--~~~~~aGD~~~~p~G~~~~w~   65 (74)
T PF05899_consen    6 VFSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITD--EDGE--TVTFKAGDAFFLPKGWTGTWE   65 (74)
T ss_dssp             SEEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEE--TTTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred             CEEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEE--CCCC--EEEEcCCcEEEECCCCEEEEE
Confidence            35666777788663 33344  3899999999999874  3565  699999999999999866554

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK13503 transcriptional activator RhaS; Provisional

Probab=97.81  E-value=4.7e-05  Score=64.45  Aligned_cols=53  Identities=25%  Similarity=0.260  Sum_probs=45.1

Q ss_pred             CCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec
Q 042644           80 VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV  138 (205)
Q Consensus        80 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~  138 (205)
                      +....++||| +..|++||++|.+++.+.   ++  ...+++||++++|+|..|.+...
T Consensus        24 ~~~~~~~H~H-~~~ei~~v~~G~~~~~i~---~~--~~~l~~g~~~~i~~~~~h~~~~~   76 (278)
T PRK13503         24 PQAAFPEHHH-DFHEIVIVEHGTGIHVFN---GQ--PYTLSGGTVCFVRDHDRHLYEHT   76 (278)
T ss_pred             cccccccccc-CceeEEEEecCceeeEec---CC--cccccCCcEEEECCCccchhhhc
Confidence            4456789999 788999999999998873   44  68999999999999999987654

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.78  E-value=5.1e-05  Score=59.95  Aligned_cols=57  Identities=19%  Similarity=0.375  Sum_probs=49.8

Q ss_pred             ccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           83 MVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        83 ~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      +...|.|. ..||-||++|++.+-+-+.+++..+.-++.||++++|+|.-|.+.-+.+
T Consensus        85 FfEEhlh~-deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~  141 (179)
T KOG2107|consen   85 FFEEHLHE-DEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPS  141 (179)
T ss_pred             HHHHhcCc-hhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCch
Confidence            45889995 5799999999999999888888888899999999999999999965443

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.75  E-value=0.00012  Score=64.76  Aligned_cols=86  Identities=16%  Similarity=-0.001  Sum_probs=64.3

Q ss_pred             CeeEEEeccCCCCC-CCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCC
Q 042644           52 YSSLTLVTAADFPG-LNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRG  130 (205)
Q Consensus        52 g~~~~~~~~~~~P~-l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G  130 (205)
                      |-.+..+|..+-+. +.+++..  ...|++|....+|.| ....++||++|++++.+   +++  ....++||+|++|.-
T Consensus       232 g~~l~y~NP~TG~~~~pti~~~--~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i---g~~--~~~W~~gD~f~vPsW  303 (335)
T TIGR02272       232 GLKLRYVNPATGGYPMPTIGAF--IQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI---GDA--VFRFSPKDVFVVPSW  303 (335)
T ss_pred             eEEEEEeCCCCCCCcchhHHHH--HhccCCCCCCCCccc-cccEEEEEEeCeEEEEE---CCE--EEEecCCCEEEECCC
Confidence            44677777666554 3444433  456888889999999 56799999999999987   344  689999999999999


Q ss_pred             CeeEEEecCCccEEEEE
Q 042644          131 LLHFGFNVGYEFATVFS  147 (205)
Q Consensus       131 ~~H~~~N~g~~~a~~l~  147 (205)
                      ..|...|.  +++.++.
T Consensus       304 ~~~~h~a~--~da~Lf~  318 (335)
T TIGR02272       304 HPVRFEAS--DDAVLFS  318 (335)
T ss_pred             CcEecccC--CCeEEEE
Confidence            88877664  4555444

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=97.68  E-value=0.00021  Score=56.21  Aligned_cols=69  Identities=23%  Similarity=0.281  Sum_probs=47.4

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .+++..++++..   +.-|.-.-.|+.||++|++.+..   +|+  ....++||+++||+|.--.+...  ..++++.+
T Consensus        76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv  144 (152)
T PF06249_consen   76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DGQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFYV  144 (152)
T ss_dssp             SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEE
T ss_pred             ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CCE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEEE
Confidence            466666667663   34577778999999999998763   466  78999999999999988777433  33554443

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=97.64  E-value=0.00043  Score=57.27  Aligned_cols=76  Identities=18%  Similarity=0.170  Sum_probs=64.3

Q ss_pred             ceEEEEEEEcCCc-ccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           70 GLSVARTDLDVDG-MVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        70 gis~~~~~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .++-..+++.|+| .-.|-.-+++.-.+||++|++.+.+   +|+  +..|++|+..++|+|..|.+.|...+++++..+
T Consensus        60 tF~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~---~G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~  134 (264)
T COG3257          60 TFVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA---EGK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHWI  134 (264)
T ss_pred             hhhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE---cCe--EEEeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence            3566778898877 6677777788889999999999987   455  799999999999999999999999999888765


Q ss_pred             Ee
Q 042644          149 LN  150 (205)
Q Consensus       149 ~~  150 (205)
                      -.
T Consensus       135 rk  136 (264)
T COG3257         135 RK  136 (264)
T ss_pred             ee
Confidence            54

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=97.53  E-value=0.0013  Score=51.46  Aligned_cols=64  Identities=14%  Similarity=0.216  Sum_probs=44.6

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC
Q 042644           74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG  139 (205)
Q Consensus        74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g  139 (205)
                      .++.=.|+...--|.. ...|++|-++|...+.+++ +++.....+++||++..|++++|+-+-..
T Consensus        36 VmvVGGPN~R~DyHin-e~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~   99 (151)
T PF06052_consen   36 VMVVGGPNQRTDYHIN-ETEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA   99 (151)
T ss_dssp             EEEEESSB--SSEEE--SS-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred             EEEEcCCCCCCccccC-CcceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence            3455566667777888 4679999999999999888 57767899999999999999999987653

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=97.50  E-value=0.0011  Score=53.25  Aligned_cols=67  Identities=19%  Similarity=0.165  Sum_probs=55.2

Q ss_pred             CCcccCCccCCCC-CeEEEEEecEEEEEEEeCC------CeEEEEEEcCC--CEEEeCCCCeeEEEecCCccEEEE
Q 042644           80 VDGMVVPHTHPRA-SEMLFVFKGVVIAGFVDTN------RQVFQVMLKAG--EVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        80 pgg~~~pH~Hp~a-~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~G--Dv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      +|-+...|+|..- .+++.|++|++...++|-.      ++.....+.+-  ..+.||+|.+|.++|.+++..+++
T Consensus        54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y  129 (173)
T COG1898          54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVY  129 (173)
T ss_pred             CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEE
Confidence            8889999999888 8999999999998888743      35556677655  799999999999999998874333

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.45  E-value=0.0012  Score=51.75  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=50.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .+++....+++ ..++  |--+-.|+-||++|++.+..   +|+  ....++||++++|+|.---+.-.|.  ++++-+
T Consensus        99 ~l~aG~m~~~~-~tf~--wtl~yDe~d~VlEGrL~V~~---~g~--tv~a~aGDvifiPKgssIefst~ge--a~flyv  167 (176)
T COG4766          99 RLGAGLMEMKN-TTFP--WTLNYDEIDYVLEGRLHVRI---DGR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYV  167 (176)
T ss_pred             ccccceeeecc-ccCc--ceecccceeEEEeeeEEEEE---cCC--eEecCCCcEEEecCCCeEEEeccce--EEEEEE
Confidence            45666666766 3333  44567899999999999876   344  5788999999999998877755444  655543

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=97.29  E-value=0.0062  Score=49.15  Aligned_cols=77  Identities=19%  Similarity=0.143  Sum_probs=58.4

Q ss_pred             cCCcccCCccCC--CCCeEEEEEecEEEEEEEeCC------CeEEEEEEcC--CCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           79 DVDGMVVPHTHP--RASEMLFVFKGVVIAGFVDTN------RQVFQVMLKA--GEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        79 ~pgg~~~pH~Hp--~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~--GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .+|.+..+|+|.  ....+++|++|++...++|-.      |+.....|.+  +..++||+|..|.+++.+++ +.++-.
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~  130 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK  130 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence            568889999983  368999999999999888853      5666788877  55999999999999998765 544443


Q ss_pred             EeC-CCCce
Q 042644          149 LNS-QNPGV  156 (205)
Q Consensus       149 ~~s-~~pg~  156 (205)
                      .+. -+|+.
T Consensus       131 ~~~~y~p~~  139 (176)
T TIGR01221       131 CTDYYAPEY  139 (176)
T ss_pred             CCCCcCccc
Confidence            332 24443

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=97.26  E-value=0.0031  Score=50.86  Aligned_cols=68  Identities=18%  Similarity=0.156  Sum_probs=53.1

Q ss_pred             cCCcccCCccCCCC---CeEEEEEecEEEEEEEeCC------CeEEEEEEcCCC--EEEeCCCCeeEEEecCCccEEEEE
Q 042644           79 DVDGMVVPHTHPRA---SEMLFVFKGVVIAGFVDTN------RQVFQVMLKAGE--VCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        79 ~pgg~~~pH~Hp~a---~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~GD--v~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+|-+..+|+|...   ..++.|++|++...++|-.      ++.....|.+++  .++||+|..|.+.+.+++ +.++.
T Consensus        51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~-a~v~Y  129 (176)
T PF00908_consen   51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD-AEVLY  129 (176)
T ss_dssp             ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE-EEEEE
T ss_pred             cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc-eEEEE
Confidence            45888999999765   6899999999998888732      677888998876  799999999999999766 43333

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=97.20  E-value=0.0083  Score=48.23  Aligned_cols=84  Identities=14%  Similarity=0.002  Sum_probs=57.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeC-CC---e----EEEEEEcCCCEEEeCCCCeeEEEecC-C
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT-NR---Q----VFQVMLKAGEVCVFPRGLLHFGFNVG-Y  140 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~-~~---~----~~~~~l~~GDv~~vP~G~~H~~~N~g-~  140 (205)
                      .+.+..+...||...+.|=|..+.-++.|++|+++-.+... ++   .    .....+..|..++++.+.+|.+.|.+ +
T Consensus        74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~  153 (175)
T PF05995_consen   74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD  153 (175)
T ss_dssp             T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred             CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence            57888899999999999999878889999999987655432 22   1    12345678888888999999999886 8


Q ss_pred             ccEEEEEEEeCCC
Q 042644          141 EFATVFSVLNSQN  153 (205)
Q Consensus       141 ~~a~~l~~~~s~~  153 (205)
                      ++++-|=++..+.
T Consensus       154 ~~avSLHvYspPl  166 (175)
T PF05995_consen  154 EPAVSLHVYSPPL  166 (175)
T ss_dssp             S-EEEEEEEES--
T ss_pred             CCEEEEEEcCCCh
Confidence            8888777776543

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=96.96  E-value=0.002  Score=48.48  Aligned_cols=61  Identities=16%  Similarity=0.168  Sum_probs=47.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN  137 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N  137 (205)
                      .+........||..   +++-...|..|+|+|++++.-  ++|+  ..++++||++++|+|..=-+.-
T Consensus        44 ~~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T~--d~Ge--~v~~~aGD~~~~~~G~~g~W~V  104 (116)
T COG3450          44 QVETGIWECTPGKF---RVTYDEDEFCHILEGRVEVTP--DGGE--PVEVRAGDSFVFPAGFKGTWEV  104 (116)
T ss_pred             CeeEeEEEecCccc---eEEcccceEEEEEeeEEEEEC--CCCe--EEEEcCCCEEEECCCCeEEEEE
Confidence            46666777777764   455566899999999998763  2455  7899999999999998776653

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.56  E-value=0.0088  Score=51.89  Aligned_cols=92  Identities=20%  Similarity=0.100  Sum_probs=66.0

Q ss_pred             CCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644           49 KFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP  128 (205)
Q Consensus        49 ~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP  128 (205)
                      +++|..+..+|..+--- .-.-|.+.+--|.||-...+|.|.+ .-++.|.+|++.+.+   +++  ++...+||+|+||
T Consensus       240 p~dG~~~ryvNP~TGg~-~mptI~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~I---g~~--rf~~~~~D~fvVP  312 (351)
T COG3435         240 PFDGYKMRYVNPVTGGY-AMPTIGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTII---GGE--RFDWSAGDIFVVP  312 (351)
T ss_pred             CCCcceEEEecCCCCCC-cCchHHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEE---CCE--EeeccCCCEEEcc
Confidence            45577777777543211 1112333344578888889999965 578889999999877   455  7899999999999


Q ss_pred             CCCeeEEEecCCccEEEEEE
Q 042644          129 RGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus       129 ~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .=..|...|. ++++.++++
T Consensus       313 sW~~~~~~~g-s~da~LFsf  331 (351)
T COG3435         313 SWAWHEHVNG-SEDAVLFSF  331 (351)
T ss_pred             CcceeecccC-CcceEEEec
Confidence            9999999874 777766653

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=96.31  E-value=0.059  Score=44.41  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=47.7

Q ss_pred             EEEEEEcC-CcccCCccCCCCCeEEEEEecEEEEEEEeCC--------C---------------------------eEEE
Q 042644           73 VARTDLDV-DGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--------R---------------------------QVFQ  116 (205)
Q Consensus        73 ~~~~~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~--------~---------------------------~~~~  116 (205)
                      ...+-+.+ |...++|+.+ ..-++.+++|+=++.+..|+        .                           +..+
T Consensus       132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~  210 (251)
T PF13621_consen  132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE  210 (251)
T ss_dssp             EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred             ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence            33455555 5578999986 56788899999888887653        0                           2357


Q ss_pred             EEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644          117 VMLKAGEVCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus       117 ~~l~~GDv~~vP~G~~H~~~N~g~~~  142 (205)
                      .+|++||+++||+|.+|..+|..+++
T Consensus       211 ~~l~pGD~LfiP~gWwH~V~~~~~~~  236 (251)
T PF13621_consen  211 VVLEPGDVLFIPPGWWHQVENLSDDD  236 (251)
T ss_dssp             EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred             EEECCCeEEEECCCCeEEEEEcCCCC
Confidence            89999999999999999999984343

...

>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length

Probab=95.98  E-value=0.051  Score=45.23  Aligned_cols=67  Identities=18%  Similarity=0.227  Sum_probs=42.5

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEEe-cEEEEEEEeCC----------------CeEE------EEEEcCCCEEEeCCCC
Q 042644           75 RTDLDVDGMVVPHTHPRASEMLFVFK-GVVIAGFVDTN----------------RQVF------QVMLKAGEVCVFPRGL  131 (205)
Q Consensus        75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~-G~~~v~~~~~~----------------~~~~------~~~l~~GDv~~vP~G~  131 (205)
                      .+.+.+|...|.|+|..-.|=+..-- |.+.+.+..++                |...      ..+|+||+.+.+++|.
T Consensus        91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~  170 (225)
T PF07385_consen   91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI  170 (225)
T ss_dssp             EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred             heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence            46678999999999999888877775 46666555432                1111      4789999999999999


Q ss_pred             eeEEEecCCc
Q 042644          132 LHFGFNVGYE  141 (205)
Q Consensus       132 ~H~~~N~g~~  141 (205)
                      .|++...+..
T Consensus       171 yH~Fw~e~g~  180 (225)
T PF07385_consen  171 YHWFWGEGGD  180 (225)
T ss_dssp             EEEEEE-TTS
T ss_pred             eeeEEecCCC
Confidence            9999875444

The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=95.61  E-value=0.046  Score=40.57  Aligned_cols=62  Identities=19%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             CcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCC--CCeeEEEecCC-ccEEEE
Q 042644           81 DGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR--GLLHFGFNVGY-EFATVF  146 (205)
Q Consensus        81 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~--G~~H~~~N~g~-~~a~~l  146 (205)
                      +.-.++|-|.+-.-+.||++|++.-.  |+.+.  ..+|++||+-++-+  |+.|.-.|.++ +++..+
T Consensus        39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l  103 (107)
T PF02678_consen   39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL  103 (107)
T ss_dssp             TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred             CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence            55668999966656669999998653  55555  57899999888865  68999999887 677665

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF12852 Cupin_6: Cupin

Probab=95.54  E-value=0.052  Score=43.44  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             CeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC
Q 042644           93 SEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG  139 (205)
Q Consensus        93 ~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g  139 (205)
                      .-+.+|++|+..+.+-+ ++.  ...|++||++++|+|..|.+....
T Consensus        36 ~~fh~V~~G~~~l~~~~-~~~--~~~L~~GDivllp~g~~H~l~~~~   79 (186)
T PF12852_consen   36 ASFHVVLRGSCWLRVPG-GGE--PIRLEAGDIVLLPRGTAHVLSSDP   79 (186)
T ss_pred             eEEEEEECCeEEEEEcC-CCC--eEEecCCCEEEEcCCCCeEeCCCC
Confidence            56778999999988532 123  689999999999999999995443

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=95.47  E-value=0.12  Score=45.28  Aligned_cols=67  Identities=22%  Similarity=0.277  Sum_probs=39.8

Q ss_pred             EEEEEEEcCCc--ccCCccCCCCCeEEEEEecEEEEEEEeCC------------------CeEEEEEEcCCCEEEeCCCC
Q 042644           72 SVARTDLDVDG--MVVPHTHPRASEMLFVFKGVVIAGFVDTN------------------RQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        72 s~~~~~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~------------------~~~~~~~l~~GDv~~vP~G~  131 (205)
                      ..+.+.+.|+|  -+.|||=. ..-+++=++|+=+..+..+.                  ......+|++||++++|+|.
T Consensus       114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~  192 (319)
T PF08007_consen  114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW  192 (319)
T ss_dssp             EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred             cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence            34445577777  78888763 23333445776555554421                  01347899999999999999


Q ss_pred             eeEEEecC
Q 042644          132 LHFGFNVG  139 (205)
Q Consensus       132 ~H~~~N~g  139 (205)
                      +|.....+
T Consensus       193 ~H~~~~~~  200 (319)
T PF08007_consen  193 WHQAVTTD  200 (319)
T ss_dssp             EEEEEESS
T ss_pred             cCCCCCCC
Confidence            99999887

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=95.33  E-value=0.14  Score=46.71  Aligned_cols=54  Identities=17%  Similarity=0.159  Sum_probs=36.3

Q ss_pred             ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           87 HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        87 H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      -++-+..|++++-+|++++.-.  =|   ...+++||+++||+|+.+.+.-.  ++++.++
T Consensus       141 f~NaDGD~Li~~q~G~l~l~Te--~G---~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi  194 (424)
T PF04209_consen  141 FRNADGDELIFPQQGSLRLETE--FG---RLDVRPGDYVVIPRGTRFRVELP--GPARGYI  194 (424)
T ss_dssp             EEESSEEEEEEEEES-EEEEET--TE---EEEE-TTEEEEE-TT--EEEE-S--SSEEEEE
T ss_pred             eEcCCCCEEEEEEECCEEEEec--Ce---eEEEcCCeEEEECCeeEEEEEeC--CCceEEE
Confidence            3456889999999999987532  24   46799999999999999998755  5555444

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=95.28  E-value=0.085  Score=44.97  Aligned_cols=45  Identities=13%  Similarity=0.195  Sum_probs=36.6

Q ss_pred             CCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           91 RASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        91 ~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      +.-++.++++|++.+..   +++  .+.+++||++++|+|.+|......+
T Consensus        48 ~~~~i~~~~~G~~~~~~---~~~--~~~~~~g~~i~i~p~~~h~~~~~~~   92 (290)
T PRK10572         48 KGYILNLTIRGQGVIFN---GGR--AFVCRPGDLLLFPPGEIHHYGRHPD   92 (290)
T ss_pred             cceEEEEEEeccEEEec---CCe--eEecCCCCEEEECCCCceeeccCCC
Confidence            45688999999999764   344  6899999999999999998765443

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=95.25  E-value=0.067  Score=38.73  Aligned_cols=74  Identities=20%  Similarity=0.246  Sum_probs=35.5

Q ss_pred             EEEcCCcccCCccCCCCC--eEEEEE--ecEEEEEEEeCC------------------CeEEEEEEcCCCEEEeCCCCee
Q 042644           76 TDLDVDGMVVPHTHPRAS--EMLFVF--KGVVIAGFVDTN------------------RQVFQVMLKAGEVCVFPRGLLH  133 (205)
Q Consensus        76 ~~l~pgg~~~pH~Hp~a~--Ei~yVl--~G~~~v~~~~~~------------------~~~~~~~l~~GDv~~vP~G~~H  133 (205)
                      ...++|+...+|.|+++.  -++||-  ++...+.+.+++                  ........++||++++|.-+.|
T Consensus         5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H   84 (101)
T PF13759_consen    5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH   84 (101)
T ss_dssp             EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred             EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence            346789999999998863  233443  233334444432                  1234678899999999999999


Q ss_pred             EEEecCCccEEEEEEE
Q 042644          134 FGFNVGYEFATVFSVL  149 (205)
Q Consensus       134 ~~~N~g~~~a~~l~~~  149 (205)
                      ...-..++.-++-.+|
T Consensus        85 ~v~p~~~~~~Risisf  100 (101)
T PF13759_consen   85 GVPPNNSDEERISISF  100 (101)
T ss_dssp             EE----SSS-EEEEEE
T ss_pred             eccCcCCCCCEEEEEc
Confidence            9854333333333334

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=95.22  E-value=0.19  Score=45.97  Aligned_cols=58  Identities=14%  Similarity=0.053  Sum_probs=43.6

Q ss_pred             cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           84 VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        84 ~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ...-.+-+..|++++-+|++.+.-..  |   ...+++||+++||+|+.+.+. ..+++++.++
T Consensus       146 ~~~f~NaDGD~Livpq~G~l~i~TEf--G---~L~v~pgei~VIPRG~~frv~-l~~gp~rgyi  203 (438)
T PRK05341        146 DRYFYNADGELLIVPQQGRLRLATEL--G---VLDVEPGEIAVIPRGVKFRVE-LPDGPARGYV  203 (438)
T ss_pred             cceeecCCCCEEEEEEeCCEEEEEec--c---ceEecCCCEEEEcCccEEEEe-cCCCCeeEEE
Confidence            34445668899999999999876433  4   478999999999999998886 3345555544

>PLN02658 homogentisate 1,2-dioxygenase

Probab=95.15  E-value=0.37  Score=43.99  Aligned_cols=55  Identities=13%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           87 HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        87 H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      -.+-+..+++++-+|++.+.-..  |   ...+++||+++||+|+.+.+. ..+++++.++
T Consensus       142 f~NaDGD~Livpq~G~l~i~TEf--G---~L~v~pgei~VIPRG~~frv~-l~~gp~rgyv  196 (435)
T PLN02658        142 FCNADGDFLIVPQQGRLWIKTEL--G---KLQVSPGEIVVIPRGFRFAVD-LPDGPSRGYV  196 (435)
T ss_pred             eecCCCCEEEEEEeCCEEEEEec--c---ceEecCCCEEEecCccEEEEe-cCCCCeeEEE
Confidence            45668999999999999876433  4   478899999999999998885 3234555443

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=94.88  E-value=0.17  Score=43.48  Aligned_cols=59  Identities=12%  Similarity=-0.003  Sum_probs=46.6

Q ss_pred             CCcccCCccC-CCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcC-CCEEEeCCCCeeEEEec
Q 042644           80 VDGMVVPHTH-PRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKA-GEVCVFPRGLLHFGFNV  138 (205)
Q Consensus        80 pgg~~~pH~H-p~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~-GDv~~vP~G~~H~~~N~  138 (205)
                      |+++..+|.| +.-.|.+.|++|++.+...++++. .....+.+ ++.-++|++.+|...-.
T Consensus        20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~   81 (287)
T PRK12335         20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAA   81 (287)
T ss_pred             hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEc
Confidence            6788899999 567799999999999988877764 33455555 45667999999999865

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=94.83  E-value=0.28  Score=44.75  Aligned_cols=57  Identities=14%  Similarity=0.202  Sum_probs=43.3

Q ss_pred             cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           84 VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        84 ~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ...-.+-+..+++++-+|++.+.-..  |   ...+++||+++||+|+.+.+.-.|  +++.++
T Consensus       140 ~~~f~NaDGD~Livpq~G~l~i~TEf--G---~L~v~pgei~VIPRG~~frv~l~g--p~rgyi  196 (429)
T TIGR01015       140 NRAFYNADGDFLIVPQQGALLITTEF--G---RLLVEPNEICVIPRGVRFRVTVLE--PARGYI  196 (429)
T ss_pred             cceeeccCCCEEEEEEeCcEEEEEec--c---ceEecCCCEEEecCccEEEEeeCC--CceEEE
Confidence            34445668899999999999876533  4   478999999999999999886544  544433

Missing in human disease alkaptonuria.

>COG1741 Pirin-related protein [General function prediction only]

Probab=94.82  E-value=0.11  Score=44.99  Aligned_cols=68  Identities=18%  Similarity=0.234  Sum_probs=51.1

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCC--CCeeEEEec--CCccEEEE
Q 042644           75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR--GLLHFGFNV--GYEFATVF  146 (205)
Q Consensus        75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~--G~~H~~~N~--g~~~a~~l  146 (205)
                      ...+.||.-++||-|.+-.-+.||++|+++-.  |+.|.  ...+++||+-..-+  |..|.-+|.  ..+++..+
T Consensus        48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~  119 (276)
T COG1741          48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGL  119 (276)
T ss_pred             cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCCccCCCcccee
Confidence            34588999999999977666679999998754  44454  58999999988876  689999886  23355433

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=94.66  E-value=0.073  Score=38.71  Aligned_cols=28  Identities=36%  Similarity=0.649  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCEEEeCCCCeeEEEecCCc
Q 042644          114 VFQVMLKAGEVCVFPRGLLHFGFNVGYE  141 (205)
Q Consensus       114 ~~~~~l~~GDv~~vP~G~~H~~~N~g~~  141 (205)
                      .+..+-++||++++|+|..|+..|.|..
T Consensus        80 ~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~  107 (114)
T PF02373_consen   80 VYRFVQKPGEFVFIPPGAYHQVFNLGDN  107 (114)
T ss_dssp             -EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred             cccceECCCCEEEECCCceEEEEeCCce
Confidence            4578889999999999999999999864

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=94.24  E-value=0.49  Score=39.52  Aligned_cols=74  Identities=14%  Similarity=0.106  Sum_probs=56.5

Q ss_pred             ccceEEEEEEEcCCcccCC-ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVP-HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      .-.+-+..++++||+..|- -+| --.-=+||++|++...+.   +.  ...+++||.+..-+-.+.+.+..|....+.+
T Consensus       179 r~Dmhv~ivsFePGa~ip~aEtH-vmEHGlyvLeGk~vYrLn---~d--wv~V~aGD~mwm~A~cpQacyagG~g~frYL  252 (264)
T COG3257         179 RFDMHVHIVSFEPGASIPYAETH-VMEHGLYVLEGKGVYRLN---NN--WVPVEAGDYIWMGAYCPQACYAGGRGAFRYL  252 (264)
T ss_pred             CcceEEEEEEecCCcccchhhhh-hhhcceEEEecceEEeec---Cc--eEEeecccEEEeeccChhhhccCCCCceEEE
Confidence            4468889999999997753 344 223457999999987763   22  7899999999999999999988777755555


Q ss_pred             E
Q 042644          147 S  147 (205)
Q Consensus       147 ~  147 (205)
                      .
T Consensus       253 l  253 (264)
T COG3257         253 L  253 (264)
T ss_pred             E
Confidence            4

>TIGR02466 conserved hypothetical protein

Probab=94.16  E-value=0.2  Score=41.30  Aligned_cols=78  Identities=22%  Similarity=0.160  Sum_probs=46.2

Q ss_pred             EEEEEEcCCcccCCccCCCCC--eEEEEE--ecEEEEEEEeCCC------------------eEEEEEEcCCCEEEeCCC
Q 042644           73 VARTDLDVDGMVVPHTHPRAS--EMLFVF--KGVVIAGFVDTNR------------------QVFQVMLKAGEVCVFPRG  130 (205)
Q Consensus        73 ~~~~~l~pgg~~~pH~Hp~a~--Ei~yVl--~G~~~v~~~~~~~------------------~~~~~~l~~GDv~~vP~G  130 (205)
                      +-...+.+|+....|.||++.  -++||-  .|.+...+.++.-                  ......-++||++++|.-
T Consensus        98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~  177 (201)
T TIGR02466        98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW  177 (201)
T ss_pred             EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence            334567889999999999862  344554  2222333333210                  011234489999999999


Q ss_pred             CeeEEEecCCccEEEEEEEe
Q 042644          131 LLHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus       131 ~~H~~~N~g~~~a~~l~~~~  150 (205)
                      +.|...-...+.-++-.+||
T Consensus       178 L~H~v~p~~~~~~RISiSFN  197 (201)
T TIGR02466       178 LRHEVPPNESEEERISVSFN  197 (201)
T ss_pred             CceecCCCCCCCCEEEEEEe
Confidence            99998533333334444454

This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.

>COG3806 ChrR Transcriptional activator [Transcription]

Probab=94.07  E-value=0.33  Score=39.85  Aligned_cols=73  Identities=18%  Similarity=0.140  Sum_probs=59.9

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      ...++++.+.+|..+|-|+| -.-|...|++|..    .+++     .++.+||+..-+.+.-|.-.-..+.++..++++
T Consensus       127 s~~V~llki~~g~s~P~HtH-~G~E~t~vl~G~~----sde~-----G~y~vgD~~~~d~~v~H~piv~~~~eClcl~al  196 (216)
T COG3806         127 SRRVALLKIEPGRSFPDHTH-VGIERTAVLEGAF----SDEN-----GEYLVGDFTLADGTVQHSPIVLPPGECLCLAAL  196 (216)
T ss_pred             CceeEEEEeccCcccccccc-cceEEEEEEeecc----ccCC-----CccccCceeecCCccccccccCCCCCceEEEEc
Confidence            57899999999999999999 6789999999875    3333     367899999999999998665667888888877


Q ss_pred             eCC
Q 042644          150 NSQ  152 (205)
Q Consensus       150 ~s~  152 (205)
                      +-+
T Consensus       197 ~~~  199 (216)
T COG3806         197 DGP  199 (216)
T ss_pred             CCC
Confidence            543

>PRK10579 hypothetical protein; Provisional

Probab=94.07  E-value=0.95  Score=32.78  Aligned_cols=55  Identities=15%  Similarity=-0.020  Sum_probs=42.3

Q ss_pred             EEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644           77 DLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN  137 (205)
Q Consensus        77 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N  137 (205)
                      .+.||.   .+.-..+.|+.-|++|++++.+-   +...+..+++|+.|-||.+...-++.
T Consensus        29 Vm~pGe---y~F~T~~~E~MeivsG~l~V~Lp---g~~ew~~~~aG~sF~VpanssF~l~v   83 (94)
T PRK10579         29 VMAEGE---YTFSTAEPEEMTVISGALNVLLP---GATDWQVYEAGEVFNVPGHSEFHLQV   83 (94)
T ss_pred             EEeeeE---EEEcCCCcEEEEEEeeEEEEECC---CCcccEEeCCCCEEEECCCCeEEEEE
Confidence            345554   33444578999999999999873   33347999999999999998877765

>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]

Probab=94.02  E-value=0.27  Score=39.11  Aligned_cols=78  Identities=19%  Similarity=0.161  Sum_probs=53.9

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEE--EeCCC----eEEEEEEcCCCEEEeCCCCeeEEEecCCccEE
Q 042644           71 LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGF--VDTNR----QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFAT  144 (205)
Q Consensus        71 is~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~--~~~~~----~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~  144 (205)
                      +++..+++.||...|+|-| .-.-++=|+.|.-.-.+  .+.++    ....+.+.+|++- .-+|.+|.+.|.|+..-.
T Consensus        73 ltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs~  150 (191)
T COG5553          73 LTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRSG  150 (191)
T ss_pred             EEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCccc
Confidence            7899999999999999999 77778888888643222  11110    1124577888888 444889999888876544


Q ss_pred             EEEEEe
Q 042644          145 VFSVLN  150 (205)
Q Consensus       145 ~l~~~~  150 (205)
                      .|-++-
T Consensus       151 aiHvy~  156 (191)
T COG5553         151 AIHVYL  156 (191)
T ss_pred             eEEEEe
Confidence            444443

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=93.99  E-value=0.66  Score=33.81  Aligned_cols=69  Identities=19%  Similarity=0.162  Sum_probs=43.2

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEe
Q 042644           74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus        74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~  150 (205)
                      ..+.++||+......-+...-++||++|++.+.     ++  ...+.+|+++++..|..-.+.+.+ +.++++.+-.
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~G   70 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGG   70 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEEc
Confidence            457788888542222223357899999998753     22  267999999999977766666553 6677665543

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=93.96  E-value=0.057  Score=45.96  Aligned_cols=76  Identities=16%  Similarity=0.051  Sum_probs=44.7

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      .+....+.++.|---.+|+| ...|-.|||+|++..+.....+   ...|.+|-.+.-|.+..|... .++++++++.-.
T Consensus       170 ~~~gll~kLPagf~g~i~~h-~~~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRt  244 (251)
T PF14499_consen  170 QYTGLLLKLPAGFTGRIHTH-ASNERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRT  244 (251)
T ss_dssp             EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E-------EESS-EEEEEEE
T ss_pred             ceeeEEEEcCCCCcCceecc-CCceEEEEEEeEEEEeecccCC---CccccCCcccccCCccccccc-ccCCCEEEEEEE
Confidence            45666777888878899999 5689999999999985432112   489999999999999999998 678888777655


Q ss_pred             e
Q 042644          150 N  150 (205)
Q Consensus       150 ~  150 (205)
                      +
T Consensus       245 d  245 (251)
T PF14499_consen  245 D  245 (251)
T ss_dssp             S
T ss_pred             C
Confidence            4

>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]

Probab=93.93  E-value=0.31  Score=39.78  Aligned_cols=66  Identities=20%  Similarity=0.217  Sum_probs=43.2

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEE-ecEEEEEEEeCC----------------CeEE------EEEEcCCCEEEeCCC
Q 042644           74 ARTDLDVDGMVVPHTHPRASEMLFVF-KGVVIAGFVDTN----------------RQVF------QVMLKAGEVCVFPRG  130 (205)
Q Consensus        74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl-~G~~~v~~~~~~----------------~~~~------~~~l~~GDv~~vP~G  130 (205)
                      -.+.+.+|.+.|+|.|++-.|=+.=- .|++.+.+...+                +...      ..+|+||+.+.+|+|
T Consensus        89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg  168 (225)
T COG3822          89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG  168 (225)
T ss_pred             eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence            34567899999999998665543322 223333222111                1111      478999999999999


Q ss_pred             CeeEEEecC
Q 042644          131 LLHFGFNVG  139 (205)
Q Consensus       131 ~~H~~~N~g  139 (205)
                      ..|++..-+
T Consensus       169 ~~HsFwae~  177 (225)
T COG3822         169 LYHSFWAEE  177 (225)
T ss_pred             ceeeeeecC
Confidence            999998643

>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=93.90  E-value=1.4  Score=34.14  Aligned_cols=77  Identities=17%  Similarity=0.096  Sum_probs=56.3

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEec-EEEEEEEeCCCeEEEEEEcC----CC--EEEeCCCCeeEEEecCCcc
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKG-VVIAGFVDTNRQVFQVMLKA----GE--VCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G-~~~v~~~~~~~~~~~~~l~~----GD--v~~vP~G~~H~~~N~g~~~  142 (205)
                      ..+....-|.++.....|.- ++.|+.+...| .+++.+++++++....+|..    |+  .++||+|.+...+-.+...
T Consensus        40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~  118 (139)
T PF06172_consen   40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGD  118 (139)
T ss_dssp             S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSS
T ss_pred             cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCC
Confidence            46666777888888877776 78999999998 58889999998877777744    43  7899999998886544555


Q ss_pred             EEEEE
Q 042644          143 ATVFS  147 (205)
Q Consensus       143 a~~l~  147 (205)
                      ..+++
T Consensus       119 y~Lvs  123 (139)
T PF06172_consen  119 YSLVS  123 (139)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=93.86  E-value=1.3  Score=36.59  Aligned_cols=132  Identities=11%  Similarity=0.013  Sum_probs=82.0

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ++.......+++|..+-..-. ....+++|++|.+.+...+++|+. ....+.+||++-...+..+.....--++..++.
T Consensus        34 ~~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~  112 (230)
T PRK09391         34 AGLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRL  112 (230)
T ss_pred             ccceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEE
Confidence            356677778888886544333 356788999999999988877763 445668999887665544332222234444332


Q ss_pred             EEe-------CCCCceeec----------------------------ccccc------C-----CCCCCHHHHHhhcCCC
Q 042644          148 VLN-------SQNPGVVSI----------------------------SDAAF------S-----DFDTIDDLVRKFIPFL  181 (205)
Q Consensus       148 ~~~-------s~~pg~~~~----------------------------~~~~f------~-----~~~~~~evLa~af~v~  181 (205)
                      +--       ..+|.....                            +..+.      +     ...++.+.||..+|++
T Consensus       113 i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGis  192 (230)
T PRK09391        113 IKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGMMALPMSRRDIADYLGLT  192 (230)
T ss_pred             EEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHCCC
Confidence            211       123322110                            00000      0     0146789999999999


Q ss_pred             HHHHHHhhhcCCCcccEEEe
Q 042644          182 CWTIRVSEMSHFQDNKLKIM  201 (205)
Q Consensus       182 ~~~v~~l~~~~~~~~~i~i~  201 (205)
                      ++++.++.+.-.+.|.|.+.
T Consensus       193 retlsR~L~~L~~~GlI~~~  212 (230)
T PRK09391        193 IETVSRALSQLQDRGLIGLS  212 (230)
T ss_pred             HHHHHHHHHHHHHCCcEEec
Confidence            99999988888877777653

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=93.84  E-value=0.57  Score=33.95  Aligned_cols=69  Identities=13%  Similarity=-0.096  Sum_probs=43.5

Q ss_pred             EEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           72 SVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        72 s~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ....-.+.||.   -+....+.|+.-|++|++.+.+-   +...+.++++|+.|.||++.-..++-.  ++...++.
T Consensus        24 ~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lp---g~~ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~   92 (94)
T PF06865_consen   24 KKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLP---GEDEWQTYSAGESFEVPANSSFDVKVK--EPTAYLCS   92 (94)
T ss_dssp             EEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEET---T-SS-EEEETT-EEEE-TTEEEEEEES--S-EEEEEE
T ss_pred             cceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcC---CCcccEEeCCCCeEEECCCCeEEEEEC--cceeeEEE
Confidence            33334456665   33444578999999999999873   333479999999999999988777653  44444443

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine

Probab=93.66  E-value=0.42  Score=39.38  Aligned_cols=85  Identities=15%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             CCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC----------eEEEE------EE-cCCC-EEEe
Q 042644           66 LNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR----------QVFQV------ML-KAGE-VCVF  127 (205)
Q Consensus        66 l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~----------~~~~~------~l-~~GD-v~~v  127 (205)
                      ..+..+++..+.|++|..+|+|=||+-+-+.-|+.|++.+.-.+--.          +....      ++ .+++ .+.-
T Consensus        39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~  118 (200)
T PF07847_consen   39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY  118 (200)
T ss_pred             EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence            44557899999999999999999999888888999999886544210          11011      12 2334 4455


Q ss_pred             CC--CCeeEEEecCCccEEEEEEEeC
Q 042644          128 PR--GLLHFGFNVGYEFATVFSVLNS  151 (205)
Q Consensus       128 P~--G~~H~~~N~g~~~a~~l~~~~s  151 (205)
                      |.  |-+|++.+.+ +++.++-++..
T Consensus       119 P~~ggNiH~f~a~~-~p~AflDIL~P  143 (200)
T PF07847_consen  119 PTSGGNIHEFTALT-GPCAFLDILAP  143 (200)
T ss_pred             cCCCCeeEEEEeCC-CCeEEEEEccC
Confidence            65  5999999886 88888888764

Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=93.64  E-value=1.1  Score=35.90  Aligned_cols=130  Identities=8%  Similarity=0.083  Sum_probs=78.1

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEeCC----CCeeEEEecCCccEEEEEE
Q 042644           74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVFPR----GLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~vP~----G~~H~~~N~g~~~a~~l~~  148 (205)
                      ....+++|..+...=. ....+++|++|.+.+...+.+|+ .....+.+||++-...    ...+...-...++..++.+
T Consensus        21 ~~~~~~kg~~l~~~g~-~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i   99 (211)
T PRK11753         21 HIHKYPAKSTLIHAGE-KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI   99 (211)
T ss_pred             eEEEeCCCCEEEeCCC-CCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEE
Confidence            4567778876543323 35679999999999987776654 4456789999985432    2222221122344444432


Q ss_pred             Ee-------CCCCceee-c---------------------------ccccc------C--------CCCCCHHHHHhhcC
Q 042644          149 LN-------SQNPGVVS-I---------------------------SDAAF------S--------DFDTIDDLVRKFIP  179 (205)
Q Consensus       149 ~~-------s~~pg~~~-~---------------------------~~~~f------~--------~~~~~~evLa~af~  179 (205)
                      -.       ..+|.... +                           +..+.      +        .-.++.+.||.-+|
T Consensus       100 ~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG  179 (211)
T PRK11753        100 SYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVG  179 (211)
T ss_pred             cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhC
Confidence            11       12333211 0                           00010      0        00466799999999


Q ss_pred             CCHHHHHHhhhcCCCcccEEEeeec
Q 042644          180 FLCWTIRVSEMSHFQDNKLKIMKHH  204 (205)
Q Consensus       180 v~~~~v~~l~~~~~~~~~i~i~~~~  204 (205)
                      ++++++.++.+.-.+.+.|.+-+.+
T Consensus       180 ~tr~tvsR~l~~l~~~gii~~~~~~  204 (211)
T PRK11753        180 CSREMVGRVLKMLEDQGLISAHGKT  204 (211)
T ss_pred             CCHHHHHHHHHHHHHCCCEEecCCE
Confidence            9999999999888888877765544

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=93.22  E-value=0.77  Score=36.32  Aligned_cols=70  Identities=20%  Similarity=0.209  Sum_probs=41.7

Q ss_pred             EEEEEEEcCCcccCCccCCCCCeEE--EEEe---cEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           72 SVARTDLDVDGMVVPHTHPRASEML--FVFK---GVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        72 s~~~~~l~pgg~~~pH~Hp~a~Ei~--yVl~---G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      .+....+.||+.+.||.-+....+-  +.|.   +...+.+   +++  ....++|+++++--...|+..|.|+++=+.+
T Consensus        81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L  155 (163)
T PF05118_consen   81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GGE--TRHWREGECWVFDDSFEHEVWNNGDEDRVVL  155 (163)
T ss_dssp             EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TTE--EEB--CTEEEEE-TTS-EEEEESSSS-EEEE
T ss_pred             hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CCe--EEEeccCcEEEEeCCEEEEEEeCCCCCEEEE
Confidence            4555568999999999886543321  1222   2222222   243  6788999999999999999999998764443

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=93.11  E-value=0.47  Score=40.53  Aligned_cols=66  Identities=18%  Similarity=0.270  Sum_probs=45.2

Q ss_pred             ceEEEEEEEcCCccc-----CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           70 GLSVARTDLDVDGMV-----VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        70 gis~~~~~l~pgg~~-----~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      ++.+.++...+..+.     ..|.+.+.--++++++|++.+..   +++  ...+++||++++|.+.+|.+.-.++
T Consensus        44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~l~~G~~~l~~~~~p~~~~~~~~  114 (302)
T PRK09685         44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DDR--QVQLAAGDITLIDASRPCSIYPQGL  114 (302)
T ss_pred             CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CCe--EEEEcCCCEEEEECCCCcEeecCCC
Confidence            456666665554322     23444444456678899998765   455  6899999999999999998765443

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.70  E-value=0.077  Score=48.85  Aligned_cols=62  Identities=19%  Similarity=0.324  Sum_probs=43.3

Q ss_pred             EEEEcC-Cc-ccCCccCCCCCeEEEEEecEEEEEEEeCC-------------------Ce-EEEEEEcCCCEEEeCCCCe
Q 042644           75 RTDLDV-DG-MVVPHTHPRASEMLFVFKGVVIAGFVDTN-------------------RQ-VFQVMLKAGEVCVFPRGLL  132 (205)
Q Consensus        75 ~~~l~p-gg-~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~-------------------~~-~~~~~l~~GDv~~vP~G~~  132 (205)
                      .+.|.| |+ -++|||- +-.-++.=++|+=+..+..|.                   |+ ++...|++||+++||+|.+
T Consensus       320 NvYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~I  398 (629)
T KOG3706|consen  320 NVYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTI  398 (629)
T ss_pred             ceeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcce
Confidence            344444 44 5799998 444455567898766665543                   11 3468999999999999999


Q ss_pred             eEEEe
Q 042644          133 HFGFN  137 (205)
Q Consensus       133 H~~~N  137 (205)
                      |....
T Consensus       399 HQA~t  403 (629)
T KOG3706|consen  399 HQADT  403 (629)
T ss_pred             eeccc
Confidence            98854

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.65  E-value=1.9  Score=38.47  Aligned_cols=72  Identities=14%  Similarity=0.069  Sum_probs=50.0

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      .|+++....+..+-.-..-+.-+..|++|+-+|++++.-..  |   ..++++||..+||+|+.....-...+ +..+
T Consensus       123 ~g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~--G---~l~v~pgeiavIPRG~~frve~~~~~-~rgy  194 (427)
T COG3508         123 DGVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTEL--G---VLEVEPGEIAVIPRGTTFRVELKDGE-ARGY  194 (427)
T ss_pred             CceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEee--c---eEEecCCcEEEeeCCceEEEEecCCc-eEEE
Confidence            45555544444443335556667789999999999876433  3   58999999999999999888754333 4433

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=91.80  E-value=1.3  Score=38.24  Aligned_cols=78  Identities=22%  Similarity=0.325  Sum_probs=50.5

Q ss_pred             ceEEEEEEEcCCc---ccCCccCCCCCeEEEEE---ecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccE
Q 042644           70 GLSVARTDLDVDG---MVVPHTHPRASEMLFVF---KGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA  143 (205)
Q Consensus        70 gis~~~~~l~pgg---~~~pH~Hp~a~Ei~yVl---~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a  143 (205)
                      .+-+....+.||+   ..|||.|.+..|..+-.   ++...+.+..+-++.....++-+|++++|+=.+|+-  .|...-
T Consensus       174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g--~gt~~y  251 (276)
T PRK00924        174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSG--VGTSNY  251 (276)
T ss_pred             cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecC--cCcccc
Confidence            4666667789998   35999998777755422   222222221111232247899999999999999987  466666


Q ss_pred             EEEEEE
Q 042644          144 TVFSVL  149 (205)
Q Consensus       144 ~~l~~~  149 (205)
                      .||..-
T Consensus       252 ~fiw~m  257 (276)
T PRK00924        252 TFIWGM  257 (276)
T ss_pred             EEEEEe
Confidence            666544

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=91.40  E-value=4.3  Score=34.77  Aligned_cols=95  Identities=20%  Similarity=0.338  Sum_probs=48.8

Q ss_pred             eEEEeccCCCCCCCccceEEEEEEEcCCc---ccCCccCCCC--------CeEEEEE----ecEEEEEEEeCCC-eEEEE
Q 042644           54 SLTLVTAADFPGLNTLGLSVARTDLDVDG---MVVPHTHPRA--------SEMLFVF----KGVVIAGFVDTNR-QVFQV  117 (205)
Q Consensus        54 ~~~~~~~~~~P~l~~~gis~~~~~l~pgg---~~~pH~Hp~a--------~Ei~yVl----~G~~~v~~~~~~~-~~~~~  117 (205)
                      .+......+.+.  ...+-+..+. .|+|   ..|||.|.+.        .|+.|-.    +|-+.-.+.+++. .....
T Consensus       136 ~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~  212 (261)
T PF04962_consen  136 TVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHY  212 (261)
T ss_dssp             EEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEE
T ss_pred             EEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEE
Confidence            344444444442  2245566555 5555   4599999662        5666653    3544433333222 23468


Q ss_pred             EEcCCCEEEeCCCCeeEEEe-cCCccEEEEEEEeCCC
Q 042644          118 MLKAGEVCVFPRGLLHFGFN-VGYEFATVFSVLNSQN  153 (205)
Q Consensus       118 ~l~~GDv~~vP~G~~H~~~N-~g~~~a~~l~~~~s~~  153 (205)
                      .++-||++++|.| .|.+.. .|.. ..++.+.-..+
T Consensus       213 ~V~~~d~V~iP~g-yHp~~aapGy~-~Yylw~maG~~  247 (261)
T PF04962_consen  213 VVRNGDAVLIPSG-YHPVVAAPGYD-MYYLWVMAGEN  247 (261)
T ss_dssp             EEETTEEEEESTT-B-SEEEEEESS-EEEEEEEESSS
T ss_pred             EEECCCEEEeCCC-CCCcCcCCCcC-cEEEEEEEcCC
Confidence            8999999999999 444432 2333 44555554444

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=91.39  E-value=1.9  Score=30.40  Aligned_cols=60  Identities=18%  Similarity=0.117  Sum_probs=42.0

Q ss_pred             CCcccCCccCCCCC--eEEEEEecEEEEEEEeCCCe--EEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           80 VDGMVVPHTHPRAS--EMLFVFKGVVIAGFVDTNRQ--VFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        80 pgg~~~pH~Hp~a~--Ei~yVl~G~~~v~~~~~~~~--~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      |.++...|.- .+-  ..+-|++|++.+...++++.  .....+.+|+..++++..+|.+.-.++
T Consensus        12 P~~l~~~H~T-K~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~   75 (82)
T PF09313_consen   12 PAALLERHNT-KAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD   75 (82)
T ss_dssp             -GGGGSSBCC-STTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred             cHHHHhhcCC-CCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence            3455666644 343  44579999999998886542  235688999999999999999987754

; PDB: 3BB6_C 3M70_A 3DL3_I.

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=91.33  E-value=1.4  Score=39.50  Aligned_cols=78  Identities=14%  Similarity=0.149  Sum_probs=54.8

Q ss_pred             CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccE
Q 042644           64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA  143 (205)
Q Consensus        64 P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a  143 (205)
                      |...  .+.+.+.+++.|.....-.- +..-|+.|++|++++.-..  +.  ...+++||+++||+...-.+. ..++++
T Consensus       328 Ppi~--eF~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~~-~~sd~~  399 (411)
T KOG2757|consen  328 PPIE--EFAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHLS-SSSDPF  399 (411)
T ss_pred             CCCc--ceeEEEeecCCCceEEeecC-CCceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCceee-ccCcce
Confidence            4544  68888999998775433333 5678999999999987532  22  589999999999999877553 345555


Q ss_pred             EEEEEE
Q 042644          144 TVFSVL  149 (205)
Q Consensus       144 ~~l~~~  149 (205)
                      ..+-++
T Consensus       400 ~~yrAf  405 (411)
T KOG2757|consen  400 LGYRAF  405 (411)
T ss_pred             eeeecc
Confidence            444333

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=91.12  E-value=1.8  Score=39.15  Aligned_cols=59  Identities=19%  Similarity=0.260  Sum_probs=42.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF  136 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~  136 (205)
                      .+++.++.+..+....+   ....++++|++|++++..   ++.  +..|++|+++++|++......
T Consensus       320 ~F~~~~~~l~~~~~~~~---~~~~~Illv~~G~~~i~~---~~~--~~~l~~G~~~fipa~~~~~~~  378 (389)
T PRK15131        320 DFAFSLHDLSDQPTTLS---QQSAAILFCVEGEAVLWK---GEQ--QLTLKPGESAFIAANESPVTV  378 (389)
T ss_pred             CcEEEEEEECCceEEec---CCCcEEEEEEcceEEEEe---CCe--EEEECCCCEEEEeCCCccEEE
Confidence            46777777765422222   245799999999999753   333  578999999999998776654

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=90.93  E-value=0.6  Score=38.77  Aligned_cols=57  Identities=16%  Similarity=0.296  Sum_probs=46.0

Q ss_pred             cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644           79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN  137 (205)
Q Consensus        79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N  137 (205)
                      .|+..---|..+ ..|++|=.+|...+.+++. ++.....+++||++..|+.+.|+-+.
T Consensus        41 GPN~RkdyHiee-geE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqR   97 (279)
T KOG3995|consen   41 GPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQR   97 (279)
T ss_pred             CCCcccccccCC-cchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhh
Confidence            444455667774 5799999999999999874 55568899999999999999998643

>PLN02288 mannose-6-phosphate isomerase

Probab=90.93  E-value=0.92  Score=41.17  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=41.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~  131 (205)
                      .+++.++.+.++.......+ +..++++|++|++++..   ++......+++|+++++|++.
T Consensus       333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~---~~~~~~~~l~~G~~~fv~a~~  390 (394)
T PLN02288        333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLST---GSSEDGTAAKRGDVFFVPAGT  390 (394)
T ss_pred             ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEec---CCccceEEEeceeEEEEeCCC
Confidence            67888888887754222213 56799999999999753   222123679999999999864

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=90.70  E-value=2.6  Score=36.58  Aligned_cols=61  Identities=23%  Similarity=0.233  Sum_probs=43.3

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF  136 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~  136 (205)
                      ..-+++.++.+.......  .+ +...+++|++|++++..   ++.  +..+++|+.+++|++.-....
T Consensus       232 ~~~F~~~~~~~~~~~~~~--~~-~~~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i  292 (302)
T TIGR00218       232 TEYFSVYKWDISGKAEFI--QQ-QSALILSVLEGSGRIKS---GGK--TLPLKKGESFFIPAHLGPFTI  292 (302)
T ss_pred             CCCeEEEEEEeCCceeec--cC-CCcEEEEEEcceEEEEE---CCE--EEEEecccEEEEccCCccEEE
Confidence            346788888876542121  22 46789999999998753   333  578999999999999865544

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=89.83  E-value=1.7  Score=28.98  Aligned_cols=57  Identities=19%  Similarity=0.039  Sum_probs=41.2

Q ss_pred             EEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644           76 TDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN  137 (205)
Q Consensus        76 ~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N  137 (205)
                      +.|.||.....+-.  +...+-|.+|++-+..   ++....+.|++||.+.+++|.--++..
T Consensus         2 ~~L~~g~~~~lr~~--~~~~l~v~~G~vWlT~---~g~~~D~~L~~G~~l~l~~g~~vvl~a   58 (63)
T PF11142_consen    2 FELAPGETLSLRAA--AGQRLRVESGRVWLTR---EGDPDDYWLQAGDSLRLRRGGRVVLSA   58 (63)
T ss_pred             EEeCCCceEEeEcC--CCcEEEEccccEEEEC---CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence            35667776665544  3445899999988775   333347999999999999998776654

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=89.66  E-value=5.5  Score=30.35  Aligned_cols=65  Identities=15%  Similarity=0.104  Sum_probs=40.8

Q ss_pred             ceEEEEEEEcCCccc-CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           70 GLSVARTDLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        70 gis~~~~~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      ++.+.++.....-.. .++ +.+.--+.+.++|...+..   +++  ...+.+||+++++.+.++.+...+.
T Consensus        33 ~~~l~~~~~~~~~~vr~~~-~~~~~~l~~~~~G~~~~~~---~g~--~~~~~pg~~~l~d~~~~~~~~~~~~   98 (172)
T PF14525_consen   33 GLRLSRISYGAQRRVRSDA-PDDHYLLVLPLSGSARIEQ---GGR--EVELAPGDVVLLDPGQPYRLEFSAG   98 (172)
T ss_pred             CEEEEEEEcCCCEEEECCC-CCCEEEEEEEccCCEEEEE---CCE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence            355555555433222 222 1223344556688877664   455  7899999999999999988875533

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=85.94  E-value=3.3  Score=27.75  Aligned_cols=48  Identities=8%  Similarity=0.213  Sum_probs=33.1

Q ss_pred             EEcCCccc-CCccCCCCCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEE
Q 042644           77 DLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCV  126 (205)
Q Consensus        77 ~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~  126 (205)
                      .+.+|..+ ...-  ....+++|++|.+.+...+.+++. ....+.+||++-
T Consensus         3 ~~~~g~~i~~~g~--~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g   52 (91)
T PF00027_consen    3 TYKKGEVIYRQGD--PCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFG   52 (91)
T ss_dssp             EESTTEEEEETTS--BESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEES
T ss_pred             EECCCCEEEeCCC--cCCEEEEEEECceEEEeceecceeeeecceeeecccc
Confidence            34555543 2222  257899999999999988876653 356788888763

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=83.83  E-value=5.9  Score=31.45  Aligned_cols=123  Identities=11%  Similarity=0.023  Sum_probs=70.9

Q ss_pred             EEEEcCCcccCCccCC-CCCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEEeCC--C--CeeEEEecCCccEEEEEE
Q 042644           75 RTDLDVDGMVVPHTHP-RASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCVFPR--G--LLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        75 ~~~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~vP~--G--~~H~~~N~g~~~a~~l~~  148 (205)
                      ...+++|..+-.---+ .+..+++|++|.+.+...+++|+. ....+.+||++-.+.  +  ..+....  .+++.++.+
T Consensus         8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A--~~~~~v~~i   85 (202)
T PRK13918          8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEA--VTDSRIDVL   85 (202)
T ss_pred             eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEE--cCceEEEEE
Confidence            3456666644222111 246799999999999988877764 445669999886542  1  1112222  234444333


Q ss_pred             EeCC--CCceeec----------------------------ccccc---------C------CCCCCHHHHHhhcCCCHH
Q 042644          149 LNSQ--NPGVVSI----------------------------SDAAF---------S------DFDTIDDLVRKFIPFLCW  183 (205)
Q Consensus       149 ~~s~--~pg~~~~----------------------------~~~~f---------~------~~~~~~evLa~af~v~~~  183 (205)
                       +..  +|.....                            +..+.         .      ...++.+.||...|++++
T Consensus        86 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~~~~~t~~~iA~~lG~tre  164 (202)
T PRK13918         86 -NPALMSAEDNLVLTQHLVRTLARAYESIYRLVGQRLKNRIAAALLELSDTPLATQEDSGETMIYATHDELAAAVGSVRE  164 (202)
T ss_pred             -EHHHcChhhHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCCCCCeEEecCCHHHHHHHhCccHH
Confidence             111  1110000                            00010         0      115789999999999999


Q ss_pred             HHHHhhhcCCCcccEEE
Q 042644          184 TIRVSEMSHFQDNKLKI  200 (205)
Q Consensus       184 ~v~~l~~~~~~~~~i~i  200 (205)
                      ++.++.+.-.+.+-|.+
T Consensus       165 tvsR~l~~l~~~g~I~~  181 (202)
T PRK13918        165 TVTKVIGELSREGYIRS  181 (202)
T ss_pred             HHHHHHHHHHHCCCEEc
Confidence            99998888777666654

>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.25  E-value=4.8  Score=28.61  Aligned_cols=43  Identities=21%  Similarity=0.057  Sum_probs=34.8

Q ss_pred             CCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644           91 RASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF  136 (205)
Q Consensus        91 ~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~  136 (205)
                      .+.|+..|+.|.+.+.+..+   ..+.+..+|+.|-+|...-.-++
T Consensus        40 a~~E~Mtvv~Gal~v~lpgs---~dWq~~~~Ge~F~VpgnS~F~lq   82 (94)
T COG3123          40 AAPEEMTVVSGALTVLLPGS---DDWQVYTAGEVFNVPGNSEFDLQ   82 (94)
T ss_pred             CCceEEEEEeeEEEEEcCCC---cccEEecCCceEEcCCCCeEEEE
Confidence            56799999999999887443   34899999999999998765554

>PHA02984 hypothetical protein; Provisional

Probab=82.93  E-value=12  Score=32.20  Aligned_cols=60  Identities=13%  Similarity=0.138  Sum_probs=44.4

Q ss_pred             CeEEE--EEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE-EeCCCC
Q 042644           93 SEMLF--VFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV-LNSQNP  154 (205)
Q Consensus        93 ~Ei~y--Vl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~-~~s~~p  154 (205)
                      .|.+|  +++|+..+.... +++..+..+++||.|.+.-+.-|.... .+..+++++. ++...|
T Consensus        92 nEy~FvlCl~G~~~I~~~~-~~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~Vi~y~v~~p  154 (286)
T PHA02984         92 NEYMFVLCLNGKTSIECFN-KGSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAVITYTSNCP  154 (286)
T ss_pred             ccEEEEEEcCCeEEEEEec-CCceeeeEEecCceEEEEccceEEEEe-CCCceEEEEEEEEecce
Confidence            46555  569999998765 456678999999999999999999974 4666665543 444433

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=81.86  E-value=3.5  Score=36.98  Aligned_cols=59  Identities=20%  Similarity=0.278  Sum_probs=41.1

Q ss_pred             EEcCCcccCCccCCCCCeEEEEEecEEE--EEEEeCC--C---------------eEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644           77 DLDVDGMVVPHTHPRASEMLFVFKGVVI--AGFVDTN--R---------------QVFQVMLKAGEVCVFPRGLLHFGFN  137 (205)
Q Consensus        77 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~--v~~~~~~--~---------------~~~~~~l~~GDv~~vP~G~~H~~~N  137 (205)
                      -..+||.+.+||-+.   -+|+++|.++  ..+....  .               -....++.+||+.++|+|.+|+-..
T Consensus       125 ~a~~GGgvg~H~D~Y---DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gva  201 (383)
T COG2850         125 FAAPGGGVGPHFDQY---DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVA  201 (383)
T ss_pred             EecCCCccCccccch---heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcc
Confidence            467899999999853   3567777654  3322110  0               0124789999999999999999876


Q ss_pred             c
Q 042644          138 V  138 (205)
Q Consensus       138 ~  138 (205)
                      .
T Consensus       202 e  202 (383)
T COG2850         202 E  202 (383)
T ss_pred             c
Confidence            5

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=81.83  E-value=14  Score=32.53  Aligned_cols=59  Identities=17%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF  136 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~  136 (205)
                      .+++.++.+..-....-  + +...+++|++|++++..   +++  ...|++|+.+++|+...-+..
T Consensus       241 ~F~l~~~~i~~~~~~~~--~-~~~~il~v~eG~~~l~~---~~~--~~~l~~G~s~~ipa~~~~~~i  299 (312)
T COG1482         241 DFALYKWDISGTAEFIK--Q-ESFSILLVLEGEGTLIG---GGQ--TLKLKKGESFFIPANDGPYTI  299 (312)
T ss_pred             ceEEEEEeccChhhhcc--C-CCcEEEEEEcCeEEEec---CCE--EEEEcCCcEEEEEcCCCcEEE
Confidence            57777777765222211  1 36799999999999864   344  799999999999999655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
2et7_A	201	Structural And Spectroscopic Insights Into The Mech		9e-27
2ete_A	201	Recombinant Oxalate Oxidase In Complex With Glycola		4e-26
1fi2_A	201	Crystal Structure Of Germin (Oxalate Oxidase) Lengt		5e-26
1ud1_A	476	Crystal Structure Of Proglycinin Mutant C88s Length		3e-05
1fxz_A	476	Crystal Structure Of Soybean Proglycinin A1ab1b Hom		3e-05
1ucx_A	476	Crystal Structure Of Proglycinin C12g Mutant Length		4e-05

>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism Of Oxalate Oxidase Length = 201

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFK-STKLRDAGDTDKFPYSSLTLVTA 60
           D LQD C  D   K  + +NG  CK P      DF  S+KL  AG+T     S++T +  
Sbjct: 4   DPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 61  ADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQV 117
           A++PG NTLG+S+AR D    G   PH HPRA+E+  V KG   V I G +D+  +++  
Sbjct: 62  AEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 118 MLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVV 157
           +++AGE  V PRGL+HF FNVG   A +    NSQNPG+V
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIV 161

>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate Length = 201

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFK-STKLRDAGDTDKFPYSSLTLVTA 60
           D LQD C  D   K  + +NG  CK P      DF  S+KL  AG+T     S++T +  
Sbjct: 4   DPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 61  ADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQV 117
           A++PG NTLG+S+ R D    G   PH HPRA+E+  V KG   V I G +D+  +++  
Sbjct: 62  AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 118 MLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVV 157
           +++AGE  V PRGL+HF FNVG   A +    NSQNPG+V
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIV 161

>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase) Length = 201

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFK-STKLRDAGDTDKFPYSSLTLVTA 60
           D LQD C  D   K  + +NG  CK P      DF  S+KL  AG+T     S++T +  
Sbjct: 4   DPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 61  ADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQV 117
           A++PG NTLG+S+ R D    G   PH HPRA+E+  V KG   V I G +D+  +++  
Sbjct: 62  AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 118 MLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVV 157
           +++AGE  V PRGL+HF FNVG   A +    NSQNPG+V
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIV 161

>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s Length = 476

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 54  SLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-R 112
           S+T  T+ DFP L+ L LS     L  + M VPH +  A+ +++   G  +   V+ N  
Sbjct: 321 SVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE 380
Query: 113 QVFQVMLKAGEVCVFPRGLL 132
           +VF   L+ G V + P+  +
Sbjct: 381 RVFDGELQEGRVLIVPQNFV 400

>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer Length = 476

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 54  SLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-R 112
           S+T  T+ DFP L+ L LS     L  + M VPH +  A+ +++   G  +   V+ N  
Sbjct: 321 SVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE 380
Query: 113 QVFQVMLKAGEVCVFPRGLL 132
           +VF   L+ G V + P+  +
Sbjct: 381 RVFDGELQEGRVLIVPQNFV 400

>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant Length = 476

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 54  SLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-R 112
           S+T  T+ DFP L+ L LS     L  + M VPH +  A+ +++   G  +   V+ N  
Sbjct: 321 SVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE 380
Query: 113 QVFQVMLKAGEVCVFPRGLL 132
           +VF   L+ G V + P+  +
Sbjct: 381 RVFDGELQEGRVLIVPQNFV 400

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	2e-42
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	1e-29
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	5e-29
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	2e-05
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	2e-28
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	1e-24
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	3e-28
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	1e-23
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	1e-23
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	4e-09
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	1e-23
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	2e-23
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	5e-09
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	3e-23
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	1e-22
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	2e-05
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	2e-22
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	1e-19
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	8e-22
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	3e-08
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	7e-11
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	6e-08
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	2e-10
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	1e-09
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	3e-05
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	3e-09
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	5e-07
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	1e-06
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	1e-06
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	2e-06
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	2e-06
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	3e-05
1v70_A	105	Probable antibiotics synthesis protein; structural	3e-06
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	4e-06
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	8e-06
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	2e-05
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	2e-05
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	5e-04
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	8e-04

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Length = 201

 Score =  140 bits (354), Expect = 2e-42
 Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 4/176 (2%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
           D LQD C  D   K  + +NG  CK           S+KL  AG+T     S++T +  A
Sbjct: 4   DPLQDFCVADLDGK-AVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVA 62

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV---DTNRQVFQVM 118
           ++PG NTLG+S+ R D    G   PH HPRA+E+  V KG ++ G +   D+  +++  +
Sbjct: 63  EWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRV 122

Query: 119 LKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 174
           ++AGE  V PRGL+HF FNVG   A +    NSQNPG+V +    F     I   V
Sbjct: 123 VRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPV 178

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Length = 476

 Score =  113 bits (282), Expect = 1e-29
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 9/168 (5%)

Query: 14  KKQTIFINGLPCKSPDRIFASDFKSTKLR------DAGDTDKFPYSSLTLVTAADFPGLN 67
            K      G   KS          + +LR       + D       S+T  T+ DFP L+
Sbjct: 275 DKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALS 334

Query: 68  TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEVCV 126
            L LS     L  + M VPH +  A+ +++   G  +   V+ N  +VF   L+ G V +
Sbjct: 335 WLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLI 394

Query: 127 FPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 174
            P+  +    +   +     S   +  P + +++  A S  + + + V
Sbjct: 395 VPQNFVVAARS-QSDNFEYVSFKTNDTPMIGTLA-GANSLLNALPEEV 440

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A Length = 493

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 26/125 (20%)

Query: 55  LTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV-----D 109
           L     +  P L   G++V++  L+ +G+ +P   P   +M+ V +G    GF      +
Sbjct: 29  LIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSP-YPQMIIVVQGKGAIGFAFPGCPE 87

Query: 110 TNRQVFQ--------------------VMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL 149
           T  +  Q                         G+V V P G+ ++ +N G E     S+L
Sbjct: 88  TFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLL 147

Query: 150 NSQNP 154
           ++ N 
Sbjct: 148 DTSNF 152

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score =  108 bits (270), Expect = 2e-28
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 2/165 (1%)

Query: 1   FDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTA 60
              L       ++                        +  L           + L L +A
Sbjct: 166 VAQLPKKQVYISSYGPASGPLASATPQGQTAKIEVPHTHNLLGQQPLVSLGGNELRLASA 225

Query: 61  ADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLK 120
            +FPG     ++ A   L+   M   H HP A E  +V  G +      +  +     L+
Sbjct: 226 KEFPGSF--NMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQ 283

Query: 121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS 165
            G+V   P+G  H   N   +   +  V N  +   + +S    S
Sbjct: 284 QGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLSTWLAS 328

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 97.9 bits (243), Expect = 1e-24
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 2/106 (1%)

Query: 50  FPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVD 109
           +   +   V   +FP     G++     L+   +   H H  A+E  +V +G        
Sbjct: 33  YDGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTS 90

Query: 110 TNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPG 155
              +V    +  G +  FPRG  H    +G + A    V N     
Sbjct: 91  PEGKVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFS 136

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score =  109 bits (273), Expect = 3e-28
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 12/158 (7%)

Query: 21  NGL---PCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTD 77
           NG+    C +  +      +S       D       SL      +   L  LGLS    +
Sbjct: 325 NGIEETICTATVKKNIGRNRS------PDIYNPQAGSLKTANELNLLILRWLGLSAEYGN 378

Query: 78  LDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEVCVFPRGLLHFGF 136
           L  + + VPH +  A  +++  +G      VD+N  +V+   L+ G V V P+     G 
Sbjct: 379 LYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGK 438

Query: 137 NVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 174
           +   +     +      P + +++    S  D + + V
Sbjct: 439 S-QSDNFEYVAFKTDSRPSIANLAGEN-SVIDNLPEEV 474

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score = 96.9 bits (240), Expect = 1e-23
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 3/130 (2%)

Query: 46  DTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIA 105
           D        +  VT+ D P L  L LS     L  + M VPH +  A+ +++  KG    
Sbjct: 333 DIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARL 392

Query: 106 GFVDTN-RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 164
             V+ N   VF   L+AG     P+           +  +  +   +   G+  ++    
Sbjct: 393 QVVNCNGNTVFDGELEAGRALTVPQNYAVAA-KSLSDRFSYVAFKTNDRAGIARLA-GTS 450

Query: 165 SDFDTIDDLV 174
           S  + +   V
Sbjct: 451 SVINNLPLDV 460

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score = 96.1 bits (238), Expect = 1e-23
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 14/162 (8%)

Query: 26  KSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVV 85
            S  +  +S  +   LR++       +     +T    P L  L + ++  D+    +++
Sbjct: 221 SSSRKELSSQDEPFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLL 280

Query: 86  PHTHPRASEMLFVFKGVVIAGFVDTNRQ-------------VFQVMLKAGEVCVFPRGLL 132
           PH   +A  ++ + +G      V  + Q              ++  L   +V V P    
Sbjct: 281 PHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYP 340

Query: 133 HFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 174
                           +N++N     ++    +    I   V
Sbjct: 341 VAINATS-NLNFFAFGINAENNRRNFLAGGKDNVMSEIPTEV 381

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score = 54.5 bits (130), Expect = 4e-09
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 13/129 (10%)

Query: 29  DRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHT 88
           DR F + +++    + G         L           N     V       + +++PH 
Sbjct: 28  DRWFRTLYRN----EWGH-----IRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH- 77

Query: 89  HPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYE--FATVF 146
           H  A  +L V  G  +   V+ + +    +L+ G     P G   F  N         + 
Sbjct: 78  HADADFLLVVLNGTAVLTLVNPDSRDS-YILEQGHAQKIPAGTTFFLVNPDDNENLRIIK 136

Query: 147 SVLNSQNPG 155
             +   NP 
Sbjct: 137 LAIPVNNPH 145

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score = 96.1 bits (238), Expect = 1e-23
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 8/136 (5%)

Query: 25  CKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMV 84
           C +   +   D          D        LT V + + P L  L LS A+  L  + M+
Sbjct: 283 CSARLAVNVDDPSK------ADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMM 336

Query: 85  VPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA 143
            PH +  A  +++  +G      V+   + VF   L  G++ V P+           +  
Sbjct: 337 APHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVK-QAFEDGF 395

Query: 144 TVFSVLNSQNPGVVSI 159
              S   S+N    S+
Sbjct: 396 EWVSFKTSENAMFQSL 411

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score = 95.7 bits (237), Expect = 2e-23
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 13/163 (7%)

Query: 24  PCKSPDRIFASDFKSTK-LRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDG 82
             +S  R   S       LR         Y  L  +T      L  L + +    ++   
Sbjct: 233 HAQSSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGA 292

Query: 83  MVVPHTHPRASEMLFVFKGVVIAGFVDTNR-----------QVFQVMLKAGEVCVFPRGL 131
           + VPH + RA+ +L   +G      V   +           + +   L  G++ V P   
Sbjct: 293 LFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSF 352

Query: 132 LHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 174
                    +   V   +N++N     ++    +    I   V
Sbjct: 353 PVALKAAS-DLNMVGIGVNAENNERNFLAGHKENVIRQIPRQV 394

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score = 54.1 bits (129), Expect = 5e-09
 Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 9/132 (6%)

Query: 26  KSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVV 85
            +P    ++ F +      G         L           N     V       + +++
Sbjct: 46  NNPYLFRSNKFLTLFKNQHGS-----LRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLL 100

Query: 86  PHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYE--FA 143
           PH H  +  ++ V +G  I   V+ + +     L  G+      G   +  N        
Sbjct: 101 PH-HSDSDLLVLVLEGQAILVLVNPDGRDTYK-LDQGDAIKIQAGTPFYLINPDNNQNLR 158

Query: 144 TVFSVLNSQNPG 155
            +   +  + PG
Sbjct: 159 ILKFAITFRRPG 170

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Length = 466

 Score = 95.0 bits (235), Expect = 3e-23
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 5/159 (3%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
                I P   +++    +NGL         A    +       D  K     ++ + + 
Sbjct: 257 GPFSVIRPPLRSQRPQEEVNGLEETICS---ARCTDNLDDPSNADVYKPQLGYISTLNSY 313

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLK 120
           D P L  L LS  R  +  + MV+P  +  A+ +L+V  G      V+ N  +VF   + 
Sbjct: 314 DLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVS 373

Query: 121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSI 159
            G++   P+G          E         + N  + ++
Sbjct: 374 QGQLLSIPQGFSVV-KRATSEQFRWIEFKTNANAQINTL 411

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score = 93.8 bits (232), Expect = 1e-22
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 2/121 (1%)

Query: 40  KLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVF 99
              +  D        ++       P L  + LS  R  L  + MV PH    +  +++  
Sbjct: 291 GRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYAT 350

Query: 100 KGVVIAGFVDTN-RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVS 158
           +G      VD   + VF   ++ G+V + P+  +              +   + N     
Sbjct: 351 RGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVI-KRASDRGFEWIAFKTNDNAITNL 409

Query: 159 I 159
           +
Sbjct: 410 L 410

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 39/157 (24%)

Query: 20  INGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLD 79
           +  L  + P R   ++        AG T+ +           D       G+++ R  + 
Sbjct: 29  LENLRAQDPVRRAEAE--------AGFTEVWD---------QDNDEFQCAGVNMIRHTIR 71

Query: 80  VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVM-------------------- 118
             G+++P     A +++FV +G  I G       + +Q                      
Sbjct: 72  PKGLLLPGFSN-APKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRP 130

Query: 119 LKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPG 155
            + G++ V P G+ H+ +N G     +    +++N  
Sbjct: 131 FREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVA 167

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 92.6 bits (229), Expect = 2e-22
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 2/117 (1%)

Query: 49  KFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV 108
           +     + +  + +F    T+  ++    ++   M   H HP   E  +   G       
Sbjct: 237 ESEGGKVYIADSTNFKVSKTIASALVT--VEPGAMRELHWHPNTHEWQYYISGKARMTVF 294

Query: 109 DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS 165
            ++        +AG+V   P  + H+  N+G E      +    +   VS++     
Sbjct: 295 ASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAM 351

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 84.5 bits (208), Expect = 1e-19
 Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 5/161 (3%)

Query: 46  DTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIA 105
                       VT  + P      L+     L    +   H H  A E  ++  G    
Sbjct: 56  HNRLEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARV 112

Query: 106 GFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV--GYEFATVFSVLNSQNPGVVSISDAA 163
             VD   + F   +  G++  FP GL H    +  G EF  VF   +        ++D  
Sbjct: 113 TIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQLTDWL 172

Query: 164 FSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMKHH 204
                 +              +   E   F++     +K  
Sbjct: 173 AHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDD 213

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score = 91.1 bits (225), Expect = 8e-22
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 15/148 (10%)

Query: 41  LRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFK 100
           LR         +     +T    P L  L + ++  D++   +++PH + +A  +L + +
Sbjct: 219 LRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINE 278

Query: 101 GVVIAGFVDTN--------------RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF 146
           G      V                  Q ++  L   +V V P                + 
Sbjct: 279 GDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATS-NLNFLA 337

Query: 147 SVLNSQNPGVVSISDAAFSDFDTIDDLV 174
             +N++N     ++    +    I+  V
Sbjct: 338 FGINAENNQRNFLAGEKDNVVRQIERQV 365

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score = 51.8 bits (123), Expect = 3e-08
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 67  NTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCV 126
           N     + +     + +++PH H  A  +LFV  G  I   V+ + +     L  G+   
Sbjct: 45  NLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDRDSYN-LHPGDAQR 102

Query: 127 FPRGLLHFGFNVGY--EFATVFSVLNSQNPG 155
            P G  ++  N         ++  +    PG
Sbjct: 103 IPAGTTYYLVNPHDHQNLKMIWLAIPVNKPG 133

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score = 59.5 bits (143), Expect = 7e-11
 Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 26/147 (17%)

Query: 53  SSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVD 109
               +      P L  L + +   ++    +++PH + +A  ++ V KG   + +     
Sbjct: 245 KLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRK 304

Query: 110 TNR----------------------QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147
             +                      + +   LK G+V + P            E   +  
Sbjct: 305 EQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASS-ELHLLGF 363

Query: 148 VLNSQNPGVVSISDAAFSDFDTIDDLV 174
            +N++N   + ++    +  D I+   
Sbjct: 364 GINAENNHRIFLAGDKDNVIDQIEKQA 390

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score = 51.0 bits (121), Expect = 6e-08
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 72  SVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL 131
            + + +   + +V+P  H  A  +L + +G       + N +     L  G     P G 
Sbjct: 45  RIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVANGNNR-KSFNLDEGHALRIPSGF 102

Query: 132 LHFGFNVGYE--FATVFSVLNSQNPG 155
           + +  N             +    PG
Sbjct: 103 ISYILNRHDNQNLRVAKISMPVNTPG 128

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531

 Score = 58.8 bits (141), Expect = 2e-10
 Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 8/138 (5%)

Query: 22  GLPCKSPDRIFASDFKSTKLRDAGDTDKF--PYSSLTLVTAADFPGLNTLGLSVARTDLD 79
            L     +  F S      + +    D F      ++ + + + P L  L LS  R    
Sbjct: 343 QLMANGLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFY 402

Query: 80  VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEVCVFPRG--LLHFGF 136
            +G+  PH +  A  +++V +G      V+ N   +    ++ G++ + P+   ++    
Sbjct: 403 RNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAG 462

Query: 137 NVGYEFATVFSVLNSQNP 154
           N G+E+   F+    +N 
Sbjct: 463 NQGFEY---FAFKTEENA 477

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 14/134 (10%)

Query: 33  ASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRA 92
           A       L    +T    + +LT  T           + ++  +++   + VPH + +A
Sbjct: 207 AKSSSRKSLSKQDNTIGNEFGNLTERTDNSLN------VLISSIEMEEGALFVPHYYSKA 260

Query: 93  SEMLFVFKGVVIAGFVDTNR-------QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATV 145
             +L V +G      V           + ++  L   +V V P                 
Sbjct: 261 IVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATS-NVNFT 319

Query: 146 FSVLNSQNPGVVSI 159
              +N+ N     +
Sbjct: 320 GFGINANNNNRNLL 333

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 7/91 (7%)

Query: 71  LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-----RQVFQVMLKAGEVC 125
             +       + +++P     A  +L V  G  I   V  +       +        +  
Sbjct: 52  YRLVEFRSKPETLLLPQ-QADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQ 110

Query: 126 VFPRGLLHFGFNVGY-EFATVFSVLNSQNPG 155
             P G + +  N    E   +  +    N  
Sbjct: 111 KIPAGTIFYLVNPDPKEDLRIIQLAMPVNNP 141

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 6/98 (6%)

Query: 60  AADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVML 119
                 L      V       + +++PH H  +  ++ V +G  I   V+ + +     L
Sbjct: 32  TEKLENLRDYR--VLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYK-L 87

Query: 120 KAGEVCVFPRGLLHFGFNVGYE--FATVFSVLNSQNPG 155
             G+      G   +  N         +   +  + PG
Sbjct: 88  DQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPG 125

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Length = 102

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 80  VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLH 133
           V+G  V H H    E+  V +G +   F D N     + L+AGE+ V P+G+ H
Sbjct: 38  VEGEFVWHEHADTDEVFIVMEGTLQIAFRDQN-----ITLQAGEMYVIPKGVEH 86

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Length = 107

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 80  VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLH 133
           + G    HTH  + ++LF  +G +   F D       + ++ GE+ V P+ + H
Sbjct: 36  LLGDYGWHTHGYSDKVLFAVEGDMAVDFADGG----SMTIREGEMAVVPKSVSH 85

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 13/111 (11%)

Query: 57  LVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQ 116
            VT           L            V+PH H +  E  +  KG         N     
Sbjct: 38  YVTGPSSGY--AFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQT 95

Query: 117 VMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDF 167
            +L +G+    PR + H  F +      +  V          I    F D 
Sbjct: 96  RVLSSGDYGSVPRNVTH-TFQIQDPDTEMTGV----------IVPGGFEDL 135

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Length = 163

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 7/123 (5%)

Query: 46  DTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---V 102
            +      S   V  A   G+  +   V    +        H H    E+  V KG   +
Sbjct: 18  SSYGIEGLSHITVAGALNHGMKEV--EVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTL 74

Query: 103 VIAG-FVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISD 161
           ++    +    Q  ++          P    H  +N          V+ S+ P  + + D
Sbjct: 75  LMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYD 134

Query: 162 AAF 164
              
Sbjct: 135 DWS 137

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 12/92 (13%), Positives = 21/92 (22%), Gaps = 10/92 (10%)

Query: 57  LVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQ 116
           +        L      +             H H    E + V  G +             
Sbjct: 36  MANGRSTGDL----FEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGERYL--- 88

Query: 117 VMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148
             L +G+    P G  H  + +      + S 
Sbjct: 89  --LISGDYANIPAGTPH-SYRMQSHRTRLVSY 117

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 57  LVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQ 116
           +    +  G       V  ++      +V H H   +E  +  +G +    + T+ Q  Q
Sbjct: 208 VAAQKNTDG----QFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMT---MWTDGQEIQ 260

Query: 117 VMLKAGEVCVFPRGLLHFGFNVG 139
             L  G+    P   +H      
Sbjct: 261 --LNPGDFLHVPANTVHSYRLDS 281

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 70  GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR 129
            +      L        H H  + ++ +  +G V+    +      + +L  G     P 
Sbjct: 27  RMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE-----EALLAPGMAAFAPA 81

Query: 130 GLLHFGFNVGYEFATVFSVL 149
           G  H   N     A +  V 
Sbjct: 82  GAPHGVRNESASPALLLVVT 101

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 70  GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR 129
              +   ++  +G   PH H      ++V +G +    +    +  +V    GE    PR
Sbjct: 38  RFVLTEFEVSPNGSTPPHFHEW-EHEIYVLEGSMGL-VLPDQGRTEEV--GPGEAIFIPR 93

Query: 130 GLLHFGFNVGYEFATVFSVLNSQNPGVV 157
           G  H       +      V   + P V 
Sbjct: 94  GEPHGFVTGPGQTCRFLVVAPCERPPVR 121

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Length = 133

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 70  GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR 129
               AR  L     V  H H    E+ ++  G    G    N +   +  KAG+VC    
Sbjct: 56  ARLFARMKLPPGSSVGLHKHEGEFEIYYILLG---EGVFHDNGKDVPI--KAGDVCFTDS 110

Query: 130 GLLHFGFNVG 139
           G  H   N G
Sbjct: 111 GESHSIENTG 120

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 15/112 (13%)

Query: 66  LNTLGLSVARTDLDV-DGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEV 124
           L   G  V+   L    G+   H+H +  E+  +  G    GF+  + +  ++  +AG+ 
Sbjct: 21  LALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSG---KGFITIDGEKIEL--QAGDW 75

Query: 125 CVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRK 176
                                           + +   +   +   D +V+ 
Sbjct: 76  LRIAPDGKRQISAASDSPIGFL---------CIQVKAGSLEGYTMTDGVVQL 118

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X Length = 79

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 52  YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG 101
           Y  L  +T      L  L + +    ++   + VPH + RA+ +L   +G
Sbjct: 17  YGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEG 66

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 86  PHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATV 145
            + H  A + LFV  G    G    +     +  +AG +    RG  H   N G      
Sbjct: 38  DNRHRGADQWLFVVDGA---GEAIVDGHTQAL--QAGSLIAIERGQAHEIRNTGDTPLKT 92

Query: 146 FSV 148
            + 
Sbjct: 93  VNF 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 32/234 (13%), Positives = 61/234 (26%), Gaps = 51/234 (21%)

Query: 4   LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTD-KFPYSSLTLVTAAD 62
           +  I  +      T+ +        + +    F    + +    + KF  S +       
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-KF----VEEVLRINYKFLMSPIKTEQRQ- 104

Query: 63  FPGLNTLGLSVARTDLDVDGMVVPHTH-PRASEM---------LFVFKGVVIAGFVDTNR 112
            P + T      R  L  D  V    +  R             L   K V+I G + + +
Sbjct: 105 -PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 113 QVFQVMLKAGEVCVFPRGLLHFGFNV-----GYEFATVFSVLNSQN------PGVVSISD 161
                   A +VC+  +      F +         +    +   Q       P   S SD
Sbjct: 164 TWV-----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 162 AAFSDFDTIDDLVRKFIPFLC--------------WTIRVSEMSHFQDNKLKIM 201
            + +    I  +  +    L                  +      F +   KI+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN--AF-NLSCKIL 269

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 70  GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR 129
              +    ++  G++  H+HP     +FV KG      V   +    V  + G       
Sbjct: 47  NFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKG---KLTVLKEQGEETV--EEGFYIFVEP 100

Query: 130 GLLHFGFNVG 139
             +H   N  
Sbjct: 101 NEIHGFRNDT 110

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 70  GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR 129
            L      +    +   H H   S + F+ +G      VD  R      +  G+  + P+
Sbjct: 99  TLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAVDGER----TPMNEGDFILTPQ 153

Query: 130 GLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDF 167
              H   N G E           +  +V+I    F++ 
Sbjct: 154 WRWHDHGNPGDEPVIWLDG---LDLPLVNILGCGFAED 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	100.0
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.98
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.97
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.97
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.97
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.97
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.97
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.97
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.96
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.96
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.96
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.96
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.96
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.96
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.95
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.95
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.94
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.94
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.94
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.94
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.93
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.93
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.93
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.93
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.93
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.93
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.93
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.92
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.92
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.87
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.81
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.79
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	99.78
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.56
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	99.52
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.51
1v70_A	105	Probable antibiotics synthesis protein; structural	99.5
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.48
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	99.46
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.46
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.46
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.45
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.45
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.45
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	99.43
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.41
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.4
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.4
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.39
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	99.39
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.39
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.37
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.36
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.36
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.36
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.36
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.35
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.34
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	99.34
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.33
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.33
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.3
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	99.28
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.28
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	99.27
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.24
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	99.24
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.23
1sef_A	274	Conserved hypothetical protein; structural genomic	99.22
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.21
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.21
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.19
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.18
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.18
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	99.15
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.15
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.14
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.11
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.11
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.1
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	99.1
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.09
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.09
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	99.09
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	99.08
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.08
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	99.08
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.07
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	99.07
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.05
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.05
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	99.04
1sef_A	274	Conserved hypothetical protein; structural genomic	99.02
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	99.0
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.99
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	98.98
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.92
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.82
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.79
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.76
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.74
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.72
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.71
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	98.67
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.66
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.65
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	98.63
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	98.59
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.58
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.56
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	98.51
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	98.49
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	98.46
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.41
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	98.33
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.29
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.2
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	98.17
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	98.12
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	98.08
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	97.99
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	97.98
3uss_A	211	Putative uncharacterized protein; cupin, three his	97.92
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.81
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.8
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	97.61
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.54
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	97.34
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	97.27
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	97.18
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	97.18
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	97.17
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	97.16
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	97.15
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	97.07
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	97.04
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	97.03
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	96.96
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	96.96
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	96.9
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	96.85
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	96.84
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	96.8
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	96.51
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	96.43
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	96.04
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	96.04
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	95.77
3loi_A	172	Putative uncharacterized protein; beta barrel, unk	95.66
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	95.51
3kv5_D	488	JMJC domain-containing histone demethylation prote	95.49
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	95.44
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	95.37
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	95.15
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	95.12
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	95.1
4diq_A	489	Lysine-specific demethylase NO66; structural genom	95.03
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	95.01
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	94.79
3kv9_A	397	JMJC domain-containing histone demethylation prote	94.75
3m3i_A	225	Putative uncharacterized protein; PFAM:PF06172, st	94.72
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	94.53
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	94.51
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	94.13
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	93.87
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	93.82
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	93.68
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	93.22
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	92.6
2rg4_A	216	Uncharacterized protein; rhodobacterales, oceanico	92.2
1znp_A	154	Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0,	92.13
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	91.78
1xe7_A	203	YML079WP, hypothetical 22.5 kDa protein in TUB1-CP	91.55
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	91.54
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	91.49
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	91.25
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	90.95
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	90.7
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	90.02
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	89.99
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	89.34
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	89.11
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	86.91
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	86.87
2ypd_A	392	Probable JMJC domain-containing histone demethyla	85.56
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	83.93
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	83.5
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	82.27
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	81.99
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	81.89
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	81.46
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	81.28
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	80.94
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	80.57
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	80.5
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	80.12

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=100.00  E-value=5.8e-47  Score=309.22  Aligned_cols=188  Identities=36%  Similarity=0.574  Sum_probs=176.3

Q ss_pred             CCCcceeccCCCCCceeeeCCcCCCCCCCCCCCCceeec-ccCCCCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEc
Q 042644            2 DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTK-LRDAGDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLD   79 (205)
Q Consensus         2 ~~~~d~cv~~~~~~~~~~~~g~~ck~~~~~~~~df~~~~-~~~~~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~   79 (205)
                      ||||||||||++++. +++|||||| |+.++++||+|++ ++.++++ |+. |+.++.++..++|++++.++++.++++.
T Consensus         4 ~~~~d~c~~~~~~~~-~~~~g~~c~-~~~~~~~df~~~~~~~~~~~~~~~~-G~~v~~~~~~~~p~l~~~~~~~~~~~l~   80 (201)
T 1fi2_A            4 DPLQDFCVADLDGKA-VSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPN-GSAVTELDVAEWPGTNTLGVSMNRVDFA   80 (201)
T ss_dssp             CCSSSCCCBCCCTTS-CCCSSCCBC-CGGGCCSCTTCCCTTSSCCCCCSTT-SEEEEEESTTTCGGGTTSSCEEEEEEEC
T ss_pred             cccceeEEecCCCCc-ccccCcccc-cCcccccceEEeeeecCCCCccCCC-CcEEEEEecccCCCcccCceEEEEEEEC
Confidence            799999999998753 789999999 9999999999999 9899987 888 9999999999999999999999999999


Q ss_pred             CCcccCCccCCCCCeEEEEEecEEEEEEEeCC---CeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCce
Q 042644           80 VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN---RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGV  156 (205)
Q Consensus        80 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~---~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~  156 (205)
                      ||+..++|||+++.|++||++|++++++.+++   ++.+.+.|++||++++|+|.+|+++|.|++++++++++++++|+.
T Consensus        81 pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~p~~  160 (201)
T 1fi2_A           81 PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI  160 (201)
T ss_dssp             TTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCC
T ss_pred             CCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCCCe
Confidence            99999999999999999999999999998764   677789999999999999999999999999999999999999999


Q ss_pred             eeccccccC-CCCCCHHHHHhhcCCCHHHHHHhhhcC
Q 042644          157 VSISDAAFS-DFDTIDDLVRKFIPFLCWTIRVSEMSH  192 (205)
Q Consensus       157 ~~~~~~~f~-~~~~~~evLa~af~v~~~~v~~l~~~~  192 (205)
                      +.++.++|+ +|.+++++|+++|+++++++++|+++.
T Consensus       161 ~~~~~~~~~~~~~~~~~vl~~af~~~~~~v~~l~~~~  197 (201)
T 1fi2_A          161 VFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKF  197 (201)
T ss_dssp             EEHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHS
T ss_pred             EehhhHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHhh
Confidence            999999998 556999999999999999999999865

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.98  E-value=2.3e-32  Score=246.85  Aligned_cols=147  Identities=17%  Similarity=0.244  Sum_probs=136.7

Q ss_pred             CCCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEEEEEEcC
Q 042644           44 AGDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLKA  121 (205)
Q Consensus        44 ~~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~l~~  121 (205)
                      ..++ ++. ||+++.+++.+||+|++++|++++++|.||++++|||||+|+||+||++|+++++++++++ +++..+|++
T Consensus       296 ~~d~~~~~-gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~  374 (466)
T 3kgl_A          296 NADVYKPQ-LGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQ  374 (466)
T ss_dssp             GEEEEETT-TEEEEEECTTTCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEET
T ss_pred             cCCcccCC-CceEEEechhhCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecC
Confidence            3444 677 9999999999999999999999999999999999999999999999999999999999864 678999999


Q ss_pred             CCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCC
Q 042644          122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQ  194 (205)
Q Consensus       122 GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~  194 (205)
                      |||++||+|++|++ |.|++++++++++++++|+...++  .++|+  .+|++||+++|+++.+++++|++++.+
T Consensus       375 GDV~v~P~G~~H~~-~ag~e~~~~l~~f~s~np~~~~LaG~~s~~~--~lP~eVla~aF~v~~~~v~~Lk~~q~e  446 (466)
T 3kgl_A          375 GQLLSIPQGFSVVK-RATSEQFRWIEFKTNANAQINTLAGRTSVLR--GLPLEVISNGYQISLEEARRVKFNTIE  446 (466)
T ss_dssp             TCEEEECTTCEEEE-EECSSEEEEEEEESSSSCCEEESSSTTCTGG--GSCHHHHHHHHTCCHHHHHHHHHSCCC
T ss_pred             CcEEEECCCCeEEE-EcCCCCEEEEEEECCCCCccccccchhhhhh--hCCHHHHHHHhCcCHHHHHHHHhccCc
Confidence            99999999999998 789999999999999999999887  57888  799999999999999999999998755

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.97  E-value=3e-31  Score=241.15  Aligned_cols=147  Identities=20%  Similarity=0.251  Sum_probs=135.2

Q ss_pred             CCCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC-CeEEEEEEcC
Q 042644           44 AGDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKA  121 (205)
Q Consensus        44 ~~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~l~~  121 (205)
                      ..++ ++. ||+++.+++.+||+|+++||++++++|.||++++|||||+|+||+||++|++++++++++ ++++..+|++
T Consensus       331 ~~di~~~~-gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~  409 (496)
T 3ksc_A          331 SPDIYNPE-AGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEA  409 (496)
T ss_dssp             CCSEEETT-TEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEET
T ss_pred             cCCcccCC-CeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecC
Confidence            3454 777 999999999999999999999999999999999999999999999999999999999986 4677889999


Q ss_pred             CCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCC
Q 042644          122 GEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQ  194 (205)
Q Consensus       122 GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~  194 (205)
                      |||++||+|++|++.|. ++++.+++++++++|+...++  .++|+  .+|++||+++|+++.+++++|++++.+
T Consensus       410 GDV~v~P~G~~H~~~a~-~e~~~~l~f~~s~np~~~~LaG~~sv~~--~~p~eVLa~aF~v~~~~v~~Lk~~q~e  481 (496)
T 3ksc_A          410 GRALTVPQNYAVAAKSL-SDRFSYVAFKTNDRAGIARLAGTSSVIN--NLPLDVVAATFNLQRNEARQLKSNNPF  481 (496)
T ss_dssp             TCEEEECTTCEEEEEEC-SSEEEEEEEESSTTCCEEESSSTTCTTT--TSCHHHHHHHHTCCHHHHHHHHHSCCC
T ss_pred             CeEEEECCCCEEEEEeC-CCCEEEEEEECCCCCccccccchhhhhh--hCCHHHHHHHHCcCHHHHHHHHhcCCc
Confidence            99999999999998764 788999999999999999887  57887  799999999999999999999997655

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.97  E-value=1.5e-31  Score=241.61  Aligned_cols=149  Identities=20%  Similarity=0.195  Sum_probs=137.7

Q ss_pred             CCCCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC-CeEEEEEEc
Q 042644           43 DAGDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLK  120 (205)
Q Consensus        43 ~~~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~l~  120 (205)
                      ...++ ++. ||+++.+++.+||+|+++||++++++|.||++++|||||+|+||+||++|++++++++++ ++++..+|+
T Consensus       295 ~~~dv~~~~-gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~  373 (465)
T 3qac_A          295 SKADVYTPE-AGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELS  373 (465)
T ss_dssp             TTCSEEETT-TEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             ccCCcccCC-CceEEEeCHHHCCCccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEec
Confidence            44555 778 999999999999999999999999999999999999999999999999999999999986 468889999


Q ss_pred             CCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCc
Q 042644          121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQD  195 (205)
Q Consensus       121 ~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~  195 (205)
                      +|||++||+|++|++. .|++++.+++++++++|+...++  .++|+  .+|++||+++|+++.+++++|++++.+.
T Consensus       374 ~GDVfvvP~g~~h~~~-ag~e~~~~l~f~~s~np~~~~LaG~~sv~~--~ip~eVla~aF~v~~e~v~~Lk~~~~e~  447 (465)
T 3qac_A          374 RGQLVVVPQNFAIVKQ-AFEDGFEWVSFKTSENAMFQSLAGRTSAIR--SLPIDVVSNIYQISREEAFGLKFNRPET  447 (465)
T ss_dssp             TTCEEEECTTCEEEEE-EEEEEEEEEEEESSTTCCEEESSSSSBHHH--HSCHHHHHHHHTCCHHHHHHHHHSCCSC
T ss_pred             CCeEEEECCCcEEEEE-cCCCCeEEEEEecCCCCcccccccchhhhh--hCCHHHHHHHhCCCHHHHHHHHhccCcc
Confidence            9999999999999985 67889999999999999999987  67887  7999999999999999999999987654

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.97  E-value=1e-30  Score=236.53  Aligned_cols=149  Identities=13%  Similarity=0.133  Sum_probs=137.4

Q ss_pred             CCCCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEEEEEEc
Q 042644           43 DAGDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLK  120 (205)
Q Consensus        43 ~~~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~l~  120 (205)
                      ..+++ ++. ||+++.+++.+||+|+++++++++++|.||++.+|||||+|+||+||++|+++++++++++ +++..+|+
T Consensus       294 ~~~~~~~~~-gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~  372 (459)
T 2e9q_A          294 ERADVFNPR-GGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVR  372 (459)
T ss_dssp             SCCSEEETT-TEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             ccCCcccCC-CeeEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEe
Confidence            44555 777 9999999999999999999999999999999999999999999999999999999998764 56778899


Q ss_pred             CCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCc
Q 042644          121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQD  195 (205)
Q Consensus       121 ~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~  195 (205)
                      +||+++||+|++|++.| |++++.+++++++++|+...++  .++|+  .+|++||+++|+++++++++|++...+.
T Consensus       373 ~GDv~v~P~G~~H~~~n-g~~~~~~l~~~~s~~~~~~~laG~~s~~~--~~p~~Vla~af~v~~~~v~~l~~~~~e~  446 (459)
T 2e9q_A          373 EGQVLMIPQNFVVIKRA-SDRGFEWIAFKTNDNAITNLLAGRVSQMR--MLPLGVLSNMYRISREEAQRLKYGQQEM  446 (459)
T ss_dssp             TTCEEEECTTCEEEEEE-EEEEEEEEEEESSSSCCEEESSSSSSHHH--HSCHHHHHHHHTCCHHHHHHHHHSCCSC
T ss_pred             CCcEEEECCCCEEEEEe-CCCCeEEEEEecCCCCcceeecchhHHHH--hCCHHHHHHHHCcCHHHHHHHHhcCCcc
Confidence            99999999999999999 7889999999999999999998  78888  7899999999999999999999887543

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.97  E-value=3.5e-30  Score=234.41  Aligned_cols=149  Identities=15%  Similarity=0.216  Sum_probs=133.5

Q ss_pred             CCCCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEEEEEEc
Q 042644           43 DAGDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLK  120 (205)
Q Consensus        43 ~~~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~l~  120 (205)
                      ...++ |+. ||+++.+++.+||+|++++|++++++|.||++++|||||+|+||+||++|+++++++++++ +++..+|+
T Consensus       366 s~~d~~n~~-GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~  444 (531)
T 3fz3_A          366 ERADIFSPR-AGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQ  444 (531)
T ss_dssp             GGCSEEETT-TEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             ccCCcccCC-CeEEEEeccccCCccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEec
Confidence            34555 888 9999999999999999999999999999999999999999999999999999999999864 67899999


Q ss_pred             CCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCc
Q 042644          121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQD  195 (205)
Q Consensus       121 ~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~  195 (205)
                      +||+++||+|++|+.. .+++.+.++++.++.+|+...++  .++|+  .+|++||+++|+++.+++++|+++..+.
T Consensus       445 ~GDV~v~P~G~~H~~~-ag~e~l~flaF~ss~np~~~~LaG~~svf~--~lP~eVLa~aF~v~~e~v~kLk~~~~es  518 (531)
T 3fz3_A          445 QGQLFIVPQNHGVIQQ-AGNQGFEYFAFKTEENAFINTLAGRTSFLR--ALPDEVLANAYQISREQARQLKYNRQET  518 (531)
T ss_dssp             TTCEEEECTTCEEEEE-EEEEEEEEEEEESSTTCCEEESSSTTCHHH--HSCHHHHHHHHTCCHHHHHHHHHSCCCS
T ss_pred             CCeEEEECCCCeEEEe-cCCCCEEEEEEecCCCCcceeccchhHHHH--hCCHHHHHHHhCcCHHHHHHHHhcCCCc
Confidence            9999999999999875 56777777755566899998887  68888  6999999999999999999999987664

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.97  E-value=6.5e-30  Score=229.14  Aligned_cols=157  Identities=13%  Similarity=0.117  Sum_probs=139.6

Q ss_pred             CCCceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC
Q 042644           33 ASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR  112 (205)
Q Consensus        33 ~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~  112 (205)
                      ...+.|+.+..++..+.. +|+++.+++.+||+|+++++++++++|.||++.+|||||+++|++||++|+++++++++++
T Consensus       212 ~~~~~~~l~~~~p~~~~~-~G~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g  290 (416)
T 1uij_A          212 SEDEPFNLRSRNPIYSNN-FGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKE  290 (416)
T ss_dssp             CSSSCEETTSSCCSEECS-SEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC-
T ss_pred             CcccceeccccCCCccCC-CceEEEEChHHCccchhcCcceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCC
Confidence            456778877665555444 6799999999999999999999999999999999999999999999999999999999866


Q ss_pred             --------------eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCC-CCceeecc---ccccCCCCCCHHHH
Q 042644          113 --------------QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQ-NPGVVSIS---DAAFSDFDTIDDLV  174 (205)
Q Consensus       113 --------------~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~-~pg~~~~~---~~~f~~~~~~~evL  174 (205)
                                    +++..+|++||+++||+|++|+++|.  +++.+++++++. +|+.+.++   .++|+  .+|++||
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~l~f~~~~~~~~~~~laG~~~sv~~--~~p~~vl  366 (416)
T 1uij_A          291 QQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVR--QIERQVQ  366 (416)
T ss_dssp             -----------CCEEEEEEEEETTCEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBSGG--GSCHHHH
T ss_pred             ccccccccccccceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEEcCCCCCcceecccchhhHHH--hCCHHHH
Confidence                          46778999999999999999999998  689999988655 89999887   68998  7999999


Q ss_pred             HhhcCCCHHHHHHhhhcCCC
Q 042644          175 RKFIPFLCWTIRVSEMSHFQ  194 (205)
Q Consensus       175 a~af~v~~~~v~~l~~~~~~  194 (205)
                      +++|+++++++++|++++.+
T Consensus       367 a~af~~~~~~v~~l~~~~~~  386 (416)
T 1uij_A          367 ELAFPGSAQDVERLLKKQRE  386 (416)
T ss_dssp             HHHSSSCHHHHHHHTTSCCS
T ss_pred             HHHHCcCHHHHHHHHhcCCc
Confidence            99999999999999987754

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.97  E-value=4.8e-30  Score=231.61  Aligned_cols=159  Identities=13%  Similarity=0.102  Sum_probs=137.7

Q ss_pred             CCCCceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC
Q 042644           32 FASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN  111 (205)
Q Consensus        32 ~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~  111 (205)
                      ....+.|+.+..++.++.. ||+++.+++.+||+|+++++++++++|.||++++|||||+|+|+.||++|++++++++++
T Consensus       243 ~~~~~~~~l~~~~p~~~~~-~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~  321 (445)
T 2cav_A          243 SSQDKPFNLRSRDPIYSNN-YGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLE  321 (445)
T ss_dssp             ---CCCEETTSSCCSEESS-SEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-
T ss_pred             CCcccceeccccCCCccCC-CceEEEeChHHCcccccCCCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCC
Confidence            3456788877666666666 889999999999999999999999999999999999999999999999999999999986


Q ss_pred             C---------e--EEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEe-CCCCceeecc---ccccCCCCCCHHHHHh
Q 042644          112 R---------Q--VFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLN-SQNPGVVSIS---DAAFSDFDTIDDLVRK  176 (205)
Q Consensus       112 ~---------~--~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~-s~~pg~~~~~---~~~f~~~~~~~evLa~  176 (205)
                      +         +  ++..+|++||+++||+|++|++.|.  +++.++++.+ +++|+.+.++   .++|+  .+|++||++
T Consensus       322 ~~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~--~~p~~vla~  397 (445)
T 2cav_A          322 QQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA--SDLNMVGIGVNAENNERNFLAGHKENVIR--QIPRQVSDL  397 (445)
T ss_dssp             ----------CCEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEESCTTCCEEESSSSTTBSGG--GSCHHHHHH
T ss_pred             CcccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC--CCeEEEEEEccCCCCCcEEcccchhhhhh--hCCHHHHHH
Confidence            3         3  6899999999999999999999998  4677777654 4589988887   68888  799999999


Q ss_pred             hcCCCHHHHHHhhhcCCCc
Q 042644          177 FIPFLCWTIRVSEMSHFQD  195 (205)
Q Consensus       177 af~v~~~~v~~l~~~~~~~  195 (205)
                      +|+++.+++++|+.++.+.
T Consensus       398 af~v~~~~v~~l~~~~~e~  416 (445)
T 2cav_A          398 TFPGSGEEVEELLENQKES  416 (445)
T ss_dssp             HSSSCHHHHHHHHHHCCSC
T ss_pred             HHCcCHHHHHHHHhcCCcc
Confidence            9999999999999877543

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.96  E-value=4.9e-30  Score=229.70  Aligned_cols=157  Identities=13%  Similarity=0.126  Sum_probs=138.0

Q ss_pred             CCceeecccCCCCCCCCCCeeEEEeccCCC-CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC
Q 042644           34 SDFKSTKLRDAGDTDKFPYSSLTLVTAADF-PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR  112 (205)
Q Consensus        34 ~df~~~~~~~~~~~~~~~g~~~~~~~~~~~-P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~  112 (205)
                      ..+.|+.+..++.++.. +|+++.+++.+| |+|+++|+++++++|.|||+.+|||||+|+|++||++|+++++++++++
T Consensus       226 ~~~~~nl~~~~p~~~n~-~G~~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~  304 (418)
T 3s7i_A          226 ITNPINLREGEPDLSNN-FGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRK  304 (418)
T ss_dssp             CCCCEETTCSCCSEEET-TEEEEEECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEE
T ss_pred             CCcccccccCCCceeCC-CCeEEEechHHcchhhccCCeeEEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCC
Confidence            36788887776666444 668999999999 9999999999999999999999999999999999999999999998765


Q ss_pred             -------------------------eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE-eCCCCceeeccc---cc
Q 042644          113 -------------------------QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL-NSQNPGVVSISD---AA  163 (205)
Q Consensus       113 -------------------------~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~-~s~~pg~~~~~~---~~  163 (205)
                                               +.+..+|++||+++||+|++||+.|.+  ++.++++. ++++|+.+.++.   ++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~--~l~~v~f~~~~~~~~~~~LAG~~~sv  382 (418)
T 3s7i_A          305 EQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASS--ELHLLGFGINAENNHRIFLAGDKDNV  382 (418)
T ss_dssp             C-------------------CCEEEEEEEEEECTTCEEEECTTCCEEEEESS--CEEEEEEEESCTTCCEEESSSSTTBH
T ss_pred             ccccccccccccccccccccccccceEEEeeeCCCCEEEECCCCEEEEECCC--CEEEEEEEcCCCCCcceEccCchhhh
Confidence                                     567899999999999999999998854  57777654 455899999885   68


Q ss_pred             cCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCc
Q 042644          164 FSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQD  195 (205)
Q Consensus       164 f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~  195 (205)
                      |+  ++|+++|++||+++.+++++|++++++.
T Consensus       383 ~~--~~~~evla~af~v~~~~v~~L~~~q~e~  412 (418)
T 3s7i_A          383 ID--QIEKQAKDLAFPGSGEQVEKLIKNQKES  412 (418)
T ss_dssp             HH--HSCHHHHHHHSSSCHHHHHHHHHTCCSC
T ss_pred             hh--cCCHHHHHHHhCCCHHHHHHHHhcCCcc
Confidence            87  7999999999999999999999988764

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.96  E-value=2e-29  Score=227.01  Aligned_cols=159  Identities=13%  Similarity=0.130  Sum_probs=139.9

Q ss_pred             CCCCCceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeC
Q 042644           31 IFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT  110 (205)
Q Consensus        31 ~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~  110 (205)
                      .....+.|+.+..++.++.. ||+++.+++.+||+|+++++++++++|.||++.+|||||+++|++||++|+++++++++
T Consensus       227 ~~~~~~~~~l~~~~p~~~~~-gG~v~~~~~~~~P~L~~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~  305 (434)
T 2ea7_A          227 LSSQDEPFNLRNSKPIYSNK-FGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGL  305 (434)
T ss_dssp             TTCSSSCEETTSSCCSEEET-TEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEE
T ss_pred             CCCcccceeeccCCCceeCC-CcEEEEEChhhCccccccCcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEec
Confidence            34556788877666665555 78999999999999999999999999999999999999999999999999999999987


Q ss_pred             CC-------------eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeC-CCCceeecc---ccccCCCCCCHHH
Q 042644          111 NR-------------QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNS-QNPGVVSIS---DAAFSDFDTIDDL  173 (205)
Q Consensus       111 ~~-------------~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s-~~pg~~~~~---~~~f~~~~~~~ev  173 (205)
                      ++             +++..+|++||+++||+|++|++.|.  +++.+++++++ ++++.+.++   .++|+  .+|++|
T Consensus       306 ~g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~--~~p~~v  381 (434)
T 2ea7_A          306 SDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINAT--SNLNFFAFGINAENNRRNFLAGGKDNVMS--EIPTEV  381 (434)
T ss_dssp             EECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBGGG--GSCHHH
T ss_pred             CccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEECCCCCCCceecccchhhhhh--hCCHHH
Confidence            53             26777999999999999999999998  57888887755 478998888   58888  799999


Q ss_pred             HHhhcCCCHHHHHHhhhcCCC
Q 042644          174 VRKFIPFLCWTIRVSEMSHFQ  194 (205)
Q Consensus       174 La~af~v~~~~v~~l~~~~~~  194 (205)
                      |+++|+++.+++++|++++.+
T Consensus       382 la~af~v~~~~v~~l~~~~~e  402 (434)
T 2ea7_A          382 LEVSFPASGKKVEKLIKKQSE  402 (434)
T ss_dssp             HHHHSSSCHHHHHHHHTTCCS
T ss_pred             HHHHHCcCHHHHHHHHhcCCc
Confidence            999999999999999987644

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.96  E-value=1.2e-28  Score=224.96  Aligned_cols=148  Identities=18%  Similarity=0.260  Sum_probs=136.0

Q ss_pred             CCCCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEEEEEEc
Q 042644           43 DAGDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLK  120 (205)
Q Consensus        43 ~~~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~l~  120 (205)
                      ..+++ ++. ||+++.+++.+||+|+++++++++++|.||++.+|||||+++|++||++|+++++++++++ +++..+|+
T Consensus       344 ~~~~~~~~~-gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~  422 (510)
T 3c3v_A          344 RSPDIYNPQ-AGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQ  422 (510)
T ss_dssp             SCCSEEETT-TEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEE
T ss_pred             ccCCcccCC-CeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEc
Confidence            34555 777 9999999999999999999999999999999999999999999999999999999998764 66778899


Q ss_pred             CCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCC
Q 042644          121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQ  194 (205)
Q Consensus       121 ~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~  194 (205)
                      +||+++||+|++|++.| |++++.+++++++.+|+...++  .++|+  .+|++||+++|+++.+++++|++...+
T Consensus       423 ~GDv~viP~G~~H~~~N-g~e~l~~l~f~~s~~p~~~~LaG~~svf~--~lp~eVla~aF~v~~e~v~~L~~~~~e  495 (510)
T 3c3v_A          423 EGHVLVVPQNFAVAGKS-QSDNFEYVAFKTDSRPSIANLAGENSVID--NLPEEVVANSYGLPREQARQLKNNNPF  495 (510)
T ss_dssp             TTCEEEECTTCEEEEEE-CSSEEEEEEEESSSSCCEEESSSTTSTTT--TSCHHHHHHHHTCCHHHHHHHHHSCCC
T ss_pred             CCcEEEECCCCeEEEEe-CCCCEEEEEEECCCCcceeecccHhHHHH--hCCHHHHHHHHCcCHHHHHHHHhhCCC
Confidence            99999999999999999 8888899888888899999888  78998  799999999999999999999987654

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.96  E-value=9.8e-29  Score=197.96  Aligned_cols=157  Identities=15%  Similarity=0.161  Sum_probs=129.3

Q ss_pred             ceeecccCCCCCCCCCCeeEEEecc-----CCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeC
Q 042644           36 FKSTKLRDAGDTDKFPYSSLTLVTA-----ADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT  110 (205)
Q Consensus        36 f~~~~~~~~~~~~~~~g~~~~~~~~-----~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~  110 (205)
                      |+|...+........ ||+++.++.     ..+|+++  ++++.+++++||++.+|| |+++.|++||++|+++++++++
T Consensus         4 ~~f~~~~~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~~   79 (178)
T 1dgw_A            4 YLFRSNKFLTLFKNQ-HGSLRLLQRFNEDTEKLENLR--DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNP   79 (178)
T ss_dssp             TEECGGGEEEEEEET-TEEEEEECCTTSSCGGGGGGT--TEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEET
T ss_pred             ceechhhcccceEcC-CCEEEEEcccCCcchhcCCcC--cEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEeC
Confidence            556644333333455 889999876     5677777  699999999999999999 9899999999999999999987


Q ss_pred             CCeEEEEEEcCCCEEEeCCCCeeEEEecCCc-cEEEEEEE-eCCCCcee---ecc-----ccccCCCCCCHHHHHhhcCC
Q 042644          111 NRQVFQVMLKAGEVCVFPRGLLHFGFNVGYE-FATVFSVL-NSQNPGVV---SIS-----DAAFSDFDTIDDLVRKFIPF  180 (205)
Q Consensus       111 ~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~-~a~~l~~~-~s~~pg~~---~~~-----~~~f~~~~~~~evLa~af~v  180 (205)
                      ++. ..+.|++||++++|+|.+|+++|.|++ ++++++++ ++++|+.+   .++     .++|+  ++|++||+++|++
T Consensus        80 ~~~-~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~g~~~~~~~~~--~~p~~vla~af~v  156 (178)
T 1dgw_A           80 DGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLS--AFSKNFLEASYDS  156 (178)
T ss_dssp             TEE-EEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGG--GSCHHHHHHHHTS
T ss_pred             CCc-EEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeeccCCcCcchhhh--hCCHHHHHHHHCc
Confidence            654 478999999999999999999999986 78887765 45677743   332     57887  8999999999999


Q ss_pred             CHHHHHHhhhcCCCcccEE
Q 042644          181 LCWTIRVSEMSHFQDNKLK  199 (205)
Q Consensus       181 ~~~~v~~l~~~~~~~~~i~  199 (205)
                      +++++++|+.+.++++.|.
T Consensus       157 ~~~~~~~l~~~~~~~~~iv  175 (178)
T 1dgw_A          157 PYDEIEQTLLQEEQEGVIV  175 (178)
T ss_dssp             CHHHHHHHTTSCCSSSSEE
T ss_pred             CHHHHHHHhcCcCcCceEE
Confidence            9999999998877777664

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.96  E-value=1.6e-28  Score=223.10  Aligned_cols=148  Identities=20%  Similarity=0.297  Sum_probs=135.8

Q ss_pred             CCCCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEEEEEEc
Q 042644           43 DAGDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLK  120 (205)
Q Consensus        43 ~~~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~l~  120 (205)
                      ..+++ ++. ||+++.+++.+||+|+++++++++++|+||++.+|||||+++|++||++|+++++++++++ +++..+|+
T Consensus       310 ~~~~~~~~~-gG~v~~~~~~~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~  388 (476)
T 1fxz_A          310 SSPDIYNPQ-AGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQ  388 (476)
T ss_dssp             SCCSEEETT-TEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEE
T ss_pred             ccCCcccCC-CeEEEEeccccCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEc
Confidence            34455 777 9999999999999999999999999999999999999999999999999999999998764 56778899


Q ss_pred             CCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCC
Q 042644          121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQ  194 (205)
Q Consensus       121 ~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~  194 (205)
                      +||+++||+|.+|++.| |++++.+++++++++|+...++  .++|+  .+|++||+++|+++++++++|++...+
T Consensus       389 ~GDv~viP~G~~H~~~n-g~~~l~~l~f~~s~~p~~~~laG~~s~~~--~~p~~Vla~af~~~~~~v~~l~~~~~e  461 (476)
T 1fxz_A          389 EGRVLIVPQNFVVAARS-QSDNFEYVSFKTNDTPMIGTLAGANSLLN--ALPEEVIQHTFNLKSQQARQIKNNNPF  461 (476)
T ss_dssp             TTCEEEECTTCEEEEEE-CSTTEEEEEEESSSSCCEEESSSTTCTGG--GSCHHHHHHHHTCCHHHHHHHHHSCCC
T ss_pred             CCCEEEECCCCeEEEEe-CCCCEEEEEEECCCCCceeEccchhHHHH--hCCHHHHHHHhCcCHHHHHHHHhhCCC
Confidence            99999999999999999 8889999998888899999887  78998  799999999999999999999987654

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.95  E-value=5.5e-28  Score=218.67  Aligned_cols=146  Identities=16%  Similarity=0.262  Sum_probs=127.5

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EE---------------
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VF---------------  115 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~---------------  115 (205)
                      +|.+.. +..+.|.|+++|++++|++|+|||+++|||| +++|++||++|++.+++++++++ .+               
T Consensus        45 ~G~~~~-~~~~~~~l~~~gvs~~r~~i~pggl~~Ph~h-~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~  122 (459)
T 2e9q_A           45 AGFTEV-WDQDNDEFQCAGVNMIRHTIRPKGLLLPGFS-NAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFK  122 (459)
T ss_dssp             TEEEEE-CCTTSHHHHHHTEEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCC
T ss_pred             CcEEEe-cCCCChhhccCceEEEEEEEcCCCEecceec-CCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccc
Confidence            767766 4556699999999999999999999999999 69999999999999999988753 12               


Q ss_pred             -----EEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCC--------Cceeecc----------------------
Q 042644          116 -----QVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQN--------PGVVSIS----------------------  160 (205)
Q Consensus       116 -----~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~--------pg~~~~~----------------------  160 (205)
                           .++|++||+++||+|++||++|.|++++++++++++.+        +..|.++                      
T Consensus       123 d~~q~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~~~~  202 (459)
T 2e9q_A          123 DQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWERSSRKGSS  202 (459)
T ss_dssp             EEECCCEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSSTTCC----------
T ss_pred             cccceeEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCCcccccCcccceeeccCCccccchhhhccccccccccc
Confidence                 46999999999999999999999999999999998655        4455554                      


Q ss_pred             ----ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEe
Q 042644          161 ----DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIM  201 (205)
Q Consensus       161 ----~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~  201 (205)
                          .++|+  +|++++|++||+++.+++++|+++++++|.|.=.
T Consensus       203 ~~~~~nif~--gf~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~~  245 (459)
T 2e9q_A          203 GEKSGNIFS--GFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQV  245 (459)
T ss_dssp             --CCCCTTT--TSCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEEC
T ss_pred             cccccchhh--cCCHHHHHhhcCCCHHHHHhhhhcccCCccEEEe
Confidence                37888  8999999999999999999999999989887643

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.95  E-value=9.9e-28  Score=216.61  Aligned_cols=146  Identities=15%  Similarity=0.286  Sum_probs=127.9

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEE---------------
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVF---------------  115 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~---------------  115 (205)
                      ||.+..|+..+ +.|+++|++++|++|+|||+++|||| +++|++||++|++.++++.+++ +.|               
T Consensus        32 ~G~~e~~d~~~-~~l~~~gvs~~R~~i~P~gl~~Ph~h-~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~~~~  109 (465)
T 3qac_A           32 RGLTEVWDSNE-QEFRCAGVSVIRRTIEPHGLLLPSFT-SAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERI  109 (465)
T ss_dssp             TEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEEECTTCCCCC---------------
T ss_pred             CcEEEEECCCC-hhhcccceEEEEEEEcCCcCcccEEc-CCCEEEEEEECcEEEEEecCCCCceeecchhcccccccccc
Confidence            88888887554 68999999999999999999999999 9999999999999999998753 222               


Q ss_pred             ---------------------EEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCC---------Cceeecc-----
Q 042644          116 ---------------------QVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQN---------PGVVSIS-----  160 (205)
Q Consensus       116 ---------------------~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~---------pg~~~~~-----  160 (205)
                                           ...+++||++++|+|++||++|.|++++++++++++.+         +..|.++     
T Consensus       110 ~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n~~nqld~~~~r~F~LaG~~~~  189 (465)
T 3qac_A          110 REQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGKPQQ  189 (465)
T ss_dssp             ---------------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTTSTTCCSCSSSCCEEESSSCCCC
T ss_pred             ccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCCcccccccccceeEEecCCCcc
Confidence                                 45899999999999999999999999999999998654         4456665     


Q ss_pred             -------------------ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEe
Q 042644          161 -------------------DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIM  201 (205)
Q Consensus       161 -------------------~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~  201 (205)
                                         .++|+  +|++++|++||+++.+++++|++++++++.|+=.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~ni~s--gF~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv  247 (465)
T 3qac_A          190 EHSGEHQFSRESRRGERNTGNIFR--GFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRV  247 (465)
T ss_dssp             SCC--------------CCCCGGG--GSCHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC
T ss_pred             ccccccccccccccccccccchhh--cCCHHHHHHHhCCCHHHHHHhhhccccceeEEEe
Confidence                               36898  8999999999999999999999999988866533

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.94  E-value=4.3e-27  Score=213.92  Aligned_cols=147  Identities=13%  Similarity=0.191  Sum_probs=126.0

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEE---------------
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVF---------------  115 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~---------------  115 (205)
                      ||.+..+ ..++|+|+++|++++|++|+|||+++|||| +|+|++||++|++.++++.+++ +.+               
T Consensus        28 ~G~~e~~-~~~~~~L~~~gvs~~R~~i~pggl~lPh~~-~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~~~~  105 (496)
T 3ksc_A           28 GGLIETW-NPNNKQFRCAGVALSRATLQRNALRRPYYS-NAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYR  105 (496)
T ss_dssp             TEEEEEC-CTTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC---------------C
T ss_pred             CcEEEec-cccchhhccCCceEEEEEecCCCEeCceEc-CCCEEEEEEeCceEEEEEeCCCCccchhhhhcccccccccc
Confidence            6666555 478899999999999999999999999999 9999999999999999999862 333               


Q ss_pred             -----EEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCC--------ceeecc----------------------
Q 042644          116 -----QVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNP--------GVVSIS----------------------  160 (205)
Q Consensus       116 -----~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~p--------g~~~~~----------------------  160 (205)
                           ..+|++||+|+||+|++||++|.|+++++++++|+..++        ..+.++                      
T Consensus       106 d~~qk~~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~  185 (496)
T 3ksc_A          106 DRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQEQEN  185 (496)
T ss_dssp             CCCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTGGGCC----------
T ss_pred             cchheeeccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCcccccCCCceeeeEecCCCccccccccccccccccccc
Confidence                 359999999999999999999999999999999987653        234443                      


Q ss_pred             --ccccCCCCCCHHHHHhhcCCCHHHHHHhh--hcCCCcccEEEee
Q 042644          161 --DAAFSDFDTIDDLVRKFIPFLCWTIRVSE--MSHFQDNKLKIMK  202 (205)
Q Consensus       161 --~~~f~~~~~~~evLa~af~v~~~~v~~l~--~~~~~~~~i~i~~  202 (205)
                        .++|+  +|+.++|+.||+++.+++++|+  +..++++.|+=++
T Consensus       186 ~~~ni~s--gF~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV~v~  229 (496)
T 3ksc_A          186 EGNNIFS--GFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVK  229 (496)
T ss_dssp             -CCSGGG--GSCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEEECS
T ss_pred             cCCCchh--hcCHHHHHHHHCCCHHHHHHHHhhcccccCccEEEec
Confidence              47888  8999999999999999999999  7777787766443

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.94  E-value=2.9e-27  Score=214.84  Aligned_cols=145  Identities=9%  Similarity=0.137  Sum_probs=123.5

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-----------------
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-----------------  114 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-----------------  114 (205)
                      +|.+..++ .+.|.|+++|++++|++|+|||+++|||| +++|++||++|++.+++++++++.                 
T Consensus        30 ~G~~e~~~-~~~~~l~~~gvs~~r~~l~Pggl~~Ph~~-~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~  107 (476)
T 1fxz_A           30 GGLIETWN-PNNKPFQCAGVALSRCTLNRNALRRPSYT-NGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRP  107 (476)
T ss_dssp             TEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC----------------
T ss_pred             CceEEeeC-CCChhhccCceEEEEEEEcCCCEecceec-CCceEEEEEecEEEEEEEcCCCcchhhcccccccccccccc
Confidence            77777655 55599999999999999999999999999 589999999999999999987541                 


Q ss_pred             -----EEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCC--------ceeecc---------------------
Q 042644          115 -----FQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNP--------GVVSIS---------------------  160 (205)
Q Consensus       115 -----~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~p--------g~~~~~---------------------  160 (205)
                           ..+.|++||+|+||+|++||++|.|+++++++++++..++        ..|.++                     
T Consensus       108 ~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~~~  187 (476)
T 1fxz_A          108 QDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQK  187 (476)
T ss_dssp             --CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHHHHC---------
T ss_pred             ccccceEEEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecCCCcccccCCccceeeccCCccccccccccccccccccc
Confidence                 2689999999999999999999999999999999985543        445454                     


Q ss_pred             -----------ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCC--CcccEEE
Q 042644          161 -----------DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHF--QDNKLKI  200 (205)
Q Consensus       161 -----------~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~--~~~~i~i  200 (205)
                                 .++|+  +|++++|++||+++.+++++|++.++  +++.|.=
T Consensus       188 ~~~~~~~~~~~~~if~--gf~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~  238 (476)
T 1fxz_A          188 GKHQQEEENEGGSILS--GFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVT  238 (476)
T ss_dssp             ----------CCCGGG--GSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEE
T ss_pred             cccccccccccchhhh--cCCHHHHHhhhCCCHHHHHhhhccccccccccEEE
Confidence                       36887  89999999999999999999999888  7777663

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.94  E-value=2.3e-26  Score=204.68  Aligned_cols=136  Identities=15%  Similarity=0.093  Sum_probs=121.0

Q ss_pred             CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeC------C-CeEEEEEEc
Q 042644           48 DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT------N-RQVFQVMLK  120 (205)
Q Consensus        48 ~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~------~-~~~~~~~l~  120 (205)
                      +.. +|+++.+++.+      +++++++++|.||++.+|||||+++|+.||++|+++++++++      + ++.+..+|+
T Consensus       223 ~n~-~G~~~~v~~~~------l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~  295 (397)
T 2phl_A          223 GNE-FGNLTERTDNS------LNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELS  295 (397)
T ss_dssp             EET-TEEEEEEEETT------TTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEE
T ss_pred             cCC-CCeEEEEeecc------CCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEec
Confidence            444 77899999887      799999999999999999999999999999999999999987      3 478899999


Q ss_pred             CCCEEEeCCCCeeEEEecCCccEEEEEEEeC-CCCceeecc---ccccCCCCCC-----HHHHHhhcCCCHHHHHHhhhc
Q 042644          121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNS-QNPGVVSIS---DAAFSDFDTI-----DDLVRKFIPFLCWTIRVSEMS  191 (205)
Q Consensus       121 ~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s-~~pg~~~~~---~~~f~~~~~~-----~evLa~af~v~~~~v~~l~~~  191 (205)
                      +||+++||+|++|+++|.+  ++.++++.++ ++|+.+.++   .++|+  .+|     ++||+++|+++++++++|+++
T Consensus       296 ~GDV~vvP~G~~h~~~n~~--~l~~l~f~~~s~~~~~~~laG~~~sv~~--~~p~~~~~~eVla~af~v~~~~v~~l~~~  371 (397)
T 2phl_A          296 KDDVFVIPAAYPVAIKATS--NVNFTGFGINANNNNRNLLAGKTDNVIS--SIGRALDGKDVLGLTFSGSGDEVMKLINK  371 (397)
T ss_dssp             TTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSSSBHHH--HHHTSTTHHHHHHHHSSSCHHHHHHHHTT
T ss_pred             CCCEEEECCCCeEEEEeCC--CeEEEEEECCCCCCcceecccchhhHHh--hCCCccchHHHHHHHhCcCHHHHHHHHhc
Confidence            9999999999999999985  7888886654 489988887   67887  455     999999999999999999988


Q ss_pred             CCC
Q 042644          192 HFQ  194 (205)
Q Consensus       192 ~~~  194 (205)
                      +.+
T Consensus       372 ~~e  374 (397)
T 2phl_A          372 QSG  374 (397)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            643

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=99.94  E-value=3.8e-26  Score=208.25  Aligned_cols=145  Identities=19%  Similarity=0.261  Sum_probs=124.3

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe------------------
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ------------------  113 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~------------------  113 (205)
                      ||.+.. +..+.|.|+++|+++++++|+|||+++|||| +++|++||++|++.++++.+++.                  
T Consensus        27 ~G~~e~-~~~~~~~l~~~gv~~~r~~i~pggl~~Ph~~-~~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~~~~  104 (493)
T 2d5f_A           27 GGLIET-WNSQHPELQCAGVTVSKRTLNRNGLHLPSYS-PYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQ  104 (493)
T ss_dssp             SEEEEE-CCTTSHHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECEEEEEECCTTCCCCEEECC-----------
T ss_pred             CcEEEE-eCCCChhhccCCEEEEEEEeCCCcEeCceec-CCCeEEEEEeCEEEEEEEeCCCccccccccccccccccccc
Confidence            655554 5566699999999999999999999999999 57899999999999999976631                  


Q ss_pred             -------EEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCC--------Cceeecc------------------
Q 042644          114 -------VFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQN--------PGVVSIS------------------  160 (205)
Q Consensus       114 -------~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~--------pg~~~~~------------------  160 (205)
                             ...+.|++||+|+||+|++||++|.|+++++++++++..+        +..|.++                  
T Consensus       105 ~~~~d~~qkv~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~  184 (493)
T 2d5f_A          105 QQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQK  184 (493)
T ss_dssp             --CSEEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCSCGGGTC------
T ss_pred             cccccccceEEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCcCcccccccccceeeccCCccccchhhhhhccccc
Confidence                   0256899999999999999999999999999999998443        2444554                  


Q ss_pred             -----------------ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEE
Q 042644          161 -----------------DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKI  200 (205)
Q Consensus       161 -----------------~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i  200 (205)
                                       .++|+  +|++++|++||+++.+++++|++.+++++.|.=
T Consensus       185 ~~~~~~~~~~~~~~~~~~nif~--gf~~e~La~aF~v~~~~v~kl~~~~~~~g~Iv~  239 (493)
T 2d5f_A          185 SHGGRKQGQHQQQEEEGGSVLS--GFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVT  239 (493)
T ss_dssp             ---------------CCCCGGG--GSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEE
T ss_pred             ccccccccccccccccccchhh--cCCHHHHHhHhCCCHHHHHHhhhcccCcccEEE
Confidence                             36887  899999999999999999999999998987764

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.93  E-value=3.8e-26  Score=208.00  Aligned_cols=147  Identities=15%  Similarity=0.270  Sum_probs=126.3

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-E---------------
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-F---------------  115 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~---------------  115 (205)
                      ||.+..|+ .++|+|+++|++++|++|.|+|+++||||+ ++|++||++|++.++++.|++-. |               
T Consensus        30 ~G~~e~w~-~~~p~l~~~Gvs~~R~~i~p~Gl~lPh~~~-a~el~yV~qG~g~~G~v~Pgcpet~~~~~~~~~~~~~~~~  107 (531)
T 3fz3_A           30 AGQIETWN-FNQGDFQCAGVAASRITIQRNGLHLPSYSN-APQLIYIVQGRGVLGAVFSGCPETFEESQQSSQQGRQQEQ  107 (531)
T ss_dssp             TEEEEECC-TTSHHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEECCTTCCCCEECCCC----------
T ss_pred             CceEEEeC-CCChhhccCcceEEEEEecCCCEeCCccCC-CCeEEEEEECcEEEEEEcCCCccccccccccccccccccc
Confidence            77776665 679999999999999999999999999995 99999999999999999885210 0               


Q ss_pred             -----------------------------------------------------------------EEEEcCCCEEEeCCC
Q 042644          116 -----------------------------------------------------------------QVMLKAGEVCVFPRG  130 (205)
Q Consensus       116 -----------------------------------------------------------------~~~l~~GDv~~vP~G  130 (205)
                                                                                       ...+++||+++||+|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~vr~GDviaiPaG  187 (531)
T 3fz3_A          108 EQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIREGDVVAIPAG  187 (531)
T ss_dssp             ---------------------------------------------------------CCSCEESCCEEEETTEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceeeecccCCcEEEECCC
Confidence                                                                             357899999999999


Q ss_pred             CeeEEEecCCccEEEEEEEeCCC--------Cceeecc------------------------------------------
Q 042644          131 LLHFGFNVGYEFATVFSVLNSQN--------PGVVSIS------------------------------------------  160 (205)
Q Consensus       131 ~~H~~~N~g~~~a~~l~~~~s~~--------pg~~~~~------------------------------------------  160 (205)
                      ++||++|.|+++++++++++..+        |..|.++                                          
T Consensus       188 ~~~w~yN~G~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (531)
T 3fz3_A          188 VAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQEQQGN  267 (531)
T ss_dssp             CCEEEECCSSSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC--------------------------------C
T ss_pred             CeEEEEeCCCceEEEEEEEccccccccCCCccceeEEcCCCcccccccccccccccccccccccccccccccchhhhccc
Confidence            99999999999999999997543        3334443                                          


Q ss_pred             -ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEee
Q 042644          161 -DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMK  202 (205)
Q Consensus       161 -~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~~  202 (205)
                       .++|+  +|+.++|++||+++.+++++|++++++++.|+=.+
T Consensus       268 ~~nifs--GFs~e~La~A~~v~~~~a~kLq~~~~~rg~IVrv~  308 (531)
T 3fz3_A          268 GNNVFS--GFNTQLLAQALNVNEETARNLQGQNDNRNQIIQVR  308 (531)
T ss_dssp             CSSGGG--GSCHHHHHHHHTSCHHHHHHHHTSSCCSCSEEECS
T ss_pred             CCCeee--cCCHHHHHHHHCCCHHHHHHHhcccccCceEEEec
Confidence             26888  89999999999999999999999999998776544

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.93  E-value=5.1e-26  Score=205.51  Aligned_cols=146  Identities=16%  Similarity=0.214  Sum_probs=127.0

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-E---------------
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-F---------------  115 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~---------------  115 (205)
                      ||.+..|+..+ |+|+++|++++|++++|+|+++||||+ ++|++||++|++.++++.+++.. +               
T Consensus        25 ~G~~e~w~~~~-~~L~~~gvs~~r~~i~p~Gl~lPh~~~-a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~~~~  102 (466)
T 3kgl_A           25 AGRIEVWDHHA-PQLRCSGVSFVRYIIESKGLYLPSFFS-TAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFG  102 (466)
T ss_dssp             TEEEEECCTTS-HHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC-----
T ss_pred             CcEEEEECCCC-hhhccCCeEEEEEEECCCCEeCCeeCC-CCeEEEEEeCeEEEEEecCCCcchhhcccccccccccccc
Confidence            88888887666 999999999999999999999999995 99999999999999999885321 1               


Q ss_pred             -------------------------------------------EEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCC
Q 042644          116 -------------------------------------------QVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQ  152 (205)
Q Consensus       116 -------------------------------------------~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~  152 (205)
                                                                 ...|++||+++||+|++||++|.|+++++++++++..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~d~~  182 (466)
T 3kgl_A          103 EGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLA  182 (466)
T ss_dssp             ------------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEEESS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEEEEcCC
Confidence                                                       1489999999999999999999999999999999765


Q ss_pred             CC--------ceeecc------------------ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEe
Q 042644          153 NP--------GVVSIS------------------DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIM  201 (205)
Q Consensus       153 ~p--------g~~~~~------------------~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~  201 (205)
                      +.        ..|.++                  .++|+  +|+.++|++||+++.+++++|++++++++.|.=.
T Consensus       183 n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~s--GF~~e~La~Af~v~~e~~~kL~~~q~~~G~Iv~v  255 (466)
T 3kgl_A          183 SHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILN--GFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRV  255 (466)
T ss_dssp             STTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGG--GSCHHHHHHHHTSCHHHHHHHTCTTCCSCSEEEC
T ss_pred             CcccccCCceeeeEecCCCccccccccccccccCCCccc--cCCHHHHHHHhCCCHHHHHHHhccccCceeEEEe
Confidence            43        445554                  27887  8999999999999999999999999888876644

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.93  E-value=5.3e-26  Score=207.48  Aligned_cols=146  Identities=12%  Similarity=0.157  Sum_probs=124.4

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-----------------
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-----------------  114 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-----------------  114 (205)
                      ||.+..+ ..+.|+|+++|+++++++|+|||+.+|||| +++|++||++|++.++++++++..                 
T Consensus        30 ~G~~e~~-~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~-~a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~  107 (510)
T 3c3v_A           30 GGYIETW-NPNNQEFECAGVALSRLVLRRNALRRPFYS-NAPQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRP  107 (510)
T ss_dssp             TEEEEEC-CTTSHHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECCEEEEEECTTCCCCEEEECCC---------
T ss_pred             CceEEEe-CCCCcccccCcEEEEEEEECCCCCccceec-CCCeEEEEEeCEEEEEEEeCCCccccccccccccccccccc
Confidence            7666655 456699999999999999999999999999 589999999999999999876410                 


Q ss_pred             ------------------EEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCC--------Cceeecc--------
Q 042644          115 ------------------FQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQN--------PGVVSIS--------  160 (205)
Q Consensus       115 ------------------~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~--------pg~~~~~--------  160 (205)
                                        ....|++||+|+||+|++||++|.|+++++++++++..+        +..|.++        
T Consensus       108 ~~~~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n~~nqld~~~r~F~LaG~~~~~~~  187 (510)
T 3c3v_A          108 PRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFNLAGNHEQEFL  187 (510)
T ss_dssp             -----------CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTBTTCCSCSCCCCEESSCCCCCTTG
T ss_pred             cccccccccccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCCcccccccccceeEecCCcccccc
Confidence                              137899999999999999999999999999999998665        3334443        


Q ss_pred             ----------------------------------------------------ccccCCCCCCHHHHHhhcCCC-HHHHHH
Q 042644          161 ----------------------------------------------------DAAFSDFDTIDDLVRKFIPFL-CWTIRV  187 (205)
Q Consensus       161 ----------------------------------------------------~~~f~~~~~~~evLa~af~v~-~~~v~~  187 (205)
                                                                          .++|+  +|++++|++||+++ ++++++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~s--gF~~~~La~af~v~~~~~~~~  265 (510)
T 3c3v_A          188 RYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFS--GFTPEFLAQAFQVDDRQIVQN  265 (510)
T ss_dssp             GGCC------------------------------------------------CCTGG--GSCHHHHHHHHTCCCHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccee--cCCHHHHHHHhCCCHHHHHHH
Confidence                                                                25887  89999999999999 999999


Q ss_pred             hhhcCC--CcccEEEe
Q 042644          188 SEMSHF--QDNKLKIM  201 (205)
Q Consensus       188 l~~~~~--~~~~i~i~  201 (205)
                      |+++++  +++.|.=.
T Consensus       266 l~~~~~~~~~g~Iv~v  281 (510)
T 3c3v_A          266 LRGENESEEQGAIVTV  281 (510)
T ss_dssp             HTTTTCCTTSCSEEEC
T ss_pred             hhccccccccccEEEe
Confidence            999888  77776643

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.93  E-value=2e-25  Score=201.37  Aligned_cols=161  Identities=15%  Similarity=0.151  Sum_probs=131.6

Q ss_pred             CCceeecccCCCCCCCCCCeeEEEecc--CCCCCCCccc-eEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeC
Q 042644           34 SDFKSTKLRDAGDTDKFPYSSLTLVTA--ADFPGLNTLG-LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT  110 (205)
Q Consensus        34 ~df~~~~~~~~~~~~~~~g~~~~~~~~--~~~P~l~~~g-is~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~  110 (205)
                      +-|+|............ +|++..++.  .+.|.+++++ +++++++++||++.+|| |++++|++||++|+++++++++
T Consensus        47 ~p~vf~~~~~~~~i~~e-~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~  124 (445)
T 2cav_A           47 NPYLFRSNKFLTLFKNQ-HGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNP  124 (445)
T ss_dssp             CTTEECGGGEEEEEEET-TEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEET
T ss_pred             CCeEEchhhcCceEEcC-CEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeC
Confidence            34665543221122234 778887643  5567888887 99999999999999999 6699999999999999999987


Q ss_pred             CCeEEEEEEcCCCEEEeCCCCeeEEEecC-CccEEEEEEEe-CCCCce---eecc-----ccccCCCCCCHHHHHhhcCC
Q 042644          111 NRQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLN-SQNPGV---VSIS-----DAAFSDFDTIDDLVRKFIPF  180 (205)
Q Consensus       111 ~~~~~~~~l~~GDv~~vP~G~~H~~~N~g-~~~a~~l~~~~-s~~pg~---~~~~-----~~~f~~~~~~~evLa~af~v  180 (205)
                      +++ +.+.|++||++++|+|..||++|.| +++++++++++ +++|+.   +.++     .++|+  ++|+++|+++|++
T Consensus       125 ~~~-~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~pg~~~~F~laG~~~~~~~~~--~~~~~vLa~af~v  201 (445)
T 2cav_A          125 DGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLS--AFSKNFLEASYDS  201 (445)
T ss_dssp             TEE-EEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGG--GSCHHHHHHHHTS
T ss_pred             CCC-EEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCCCCceeeeeccCCCchhhhhh--cCCHHHHHHHhCC
Confidence            665 7899999999999999999999998 89999999887 555653   3344     36888  7999999999999


Q ss_pred             CHHHHHHhhhcCCCcccEE
Q 042644          181 LCWTIRVSEMSHFQDNKLK  199 (205)
Q Consensus       181 ~~~~v~~l~~~~~~~~~i~  199 (205)
                      +++++++|++..++++.|.
T Consensus       202 ~~~~v~~l~~~~~~~g~Iv  220 (445)
T 2cav_A          202 PYDEIEQTLLQEEQEGVIV  220 (445)
T ss_dssp             CHHHHHHHTTSCCSSSSEE
T ss_pred             CHHHHHhhhcccCCCCcEE
Confidence            9999999998777777765

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.93  E-value=1.8e-25  Score=198.95  Aligned_cols=146  Identities=13%  Similarity=0.155  Sum_probs=124.6

Q ss_pred             CCCCCeeEEEe--ccCCCCCCCccc-eEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCE
Q 042644           48 DKFPYSSLTLV--TAADFPGLNTLG-LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEV  124 (205)
Q Consensus        48 ~~~~g~~~~~~--~~~~~P~l~~~g-is~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv  124 (205)
                      ... ||.++.+  +..+.|.|++++ +++++++++|||+.+|||| +++|++||++|++++++++++++ +++.|++||+
T Consensus        27 ~~e-~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~-~a~ei~yVl~G~~~v~~v~~~~~-~~~~l~~GDv  103 (397)
T 2phl_A           27 KNQ-YGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPDDR-REYFFLTSDN  103 (397)
T ss_dssp             EET-TEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEETTTE-EEEEEEESSC
T ss_pred             EcC-CEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEec-CCCeEEEEEeeeEEEEEEeCCCc-EEEEECCCCc
Confidence            444 8899987  556669999998 9999999999999999999 89999999999999999998777 5899999999


Q ss_pred             ------EEeCCCCeeEEEecC-CccEEEEEEEeCCC-C--ceeeccc-----cccCCCCCCHHHHHhhcCCCHHHHHHhh
Q 042644          125 ------CVFPRGLLHFGFNVG-YEFATVFSVLNSQN-P--GVVSISD-----AAFSDFDTIDDLVRKFIPFLCWTIRVSE  189 (205)
Q Consensus       125 ------~~vP~G~~H~~~N~g-~~~a~~l~~~~s~~-p--g~~~~~~-----~~f~~~~~~~evLa~af~v~~~~v~~l~  189 (205)
                            ++||+|.+||++|.| ++++++++++++.+ |  ..+.++.     ++|+  ++|++||+++|+++++++++|+
T Consensus       104 ~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~~~~~~f~L~G~~~~~s~~~--~~~~~vLa~af~v~~~~v~~l~  181 (397)
T 2phl_A          104 PIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQ--EFSKHILEASFNSKFEEINRVL  181 (397)
T ss_dssp             TTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGG--GSCHHHHHHHHTSCHHHHHHHH
T ss_pred             ccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCCccceeeeccCCCchhHHhh--cCCHHHHHHHhCCCHHHHHhhh
Confidence                  999999999999999 78999999987543 3  3345442     5887  8999999999999999999999


Q ss_pred             hcC-C-CcccE
Q 042644          190 MSH-F-QDNKL  198 (205)
Q Consensus       190 ~~~-~-~~~~i  198 (205)
                      .++ + +++.|
T Consensus       182 ~~~~~q~~~~I  192 (397)
T 2phl_A          182 FEEEGQQEGVI  192 (397)
T ss_dssp             TCSTTCBSSSE
T ss_pred             hcccccccCce
Confidence            444 3 34444

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.93  E-value=3.1e-25  Score=199.69  Aligned_cols=138  Identities=15%  Similarity=0.191  Sum_probs=119.1

Q ss_pred             CeeEEEe--ccCCCCCCCccc-eEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644           52 YSSLTLV--TAADFPGLNTLG-LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP  128 (205)
Q Consensus        52 g~~~~~~--~~~~~P~l~~~g-is~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP  128 (205)
                      ||++..+  +..+.|.|++++ +++++++++||++.+|| |++++|++||++|++++++++++ +.+.+.|++||++++|
T Consensus        39 ~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~~~-~~~~~~l~~GDv~~iP  116 (434)
T 2ea7_A           39 WGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPD-SRDSYILEQGHAQKIP  116 (434)
T ss_dssp             TEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSS-CEEEEEEETTEEEEEC
T ss_pred             CEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEeCC-CCEEEEeCCCCEEEEC
Confidence            8899887  446668899998 99999999999999999 77999999999999999999854 4568999999999999


Q ss_pred             CCCeeEEEecC-CccEEEEEEEe-CCCCce---eeccc-----cccCCCCCCHHHHHhhcCCCHHHHHHhh-hcCC
Q 042644          129 RGLLHFGFNVG-YEFATVFSVLN-SQNPGV---VSISD-----AAFSDFDTIDDLVRKFIPFLCWTIRVSE-MSHF  193 (205)
Q Consensus       129 ~G~~H~~~N~g-~~~a~~l~~~~-s~~pg~---~~~~~-----~~f~~~~~~~evLa~af~v~~~~v~~l~-~~~~  193 (205)
                      +|.+||++|.| +++++++++++ +++|+.   +.++.     ++|+  ++|++||+++|+++++++++|+ +.++
T Consensus       117 ~G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g~~~~~~~~~--~~~~~vLa~af~v~~~~v~~l~~~~~~  190 (434)
T 2ea7_A          117 AGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLR--GFSKNILEASFDSDFKEINRVLFGEER  190 (434)
T ss_dssp             TTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGG--GSCHHHHHHHHTSCHHHHHHHHTCC--
T ss_pred             CCccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecCCcchhhhhh--cCCHHHHHHHhCCCHHHHHhhhhcccc
Confidence            99999999998 88999999875 556653   34544     4887  8999999999999999999999 6543

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.93  E-value=2.6e-25  Score=199.30  Aligned_cols=144  Identities=17%  Similarity=0.196  Sum_probs=122.4

Q ss_pred             CeeEEEe--ccCCCCCCCccc-eEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644           52 YSSLTLV--TAADFPGLNTLG-LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP  128 (205)
Q Consensus        52 g~~~~~~--~~~~~P~l~~~g-is~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP  128 (205)
                      ||++..+  +..+.+.|++++ +++++++++||++.+|| |++++|++||++|+++++++++ ++.+++.|++||++++|
T Consensus        27 ~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~~-~~~~~~~l~~GDv~~iP  104 (416)
T 1uij_A           27 NGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNN-DDRDSYNLHPGDAQRIP  104 (416)
T ss_dssp             SEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECS-SCEEEEEECTTEEEEEC
T ss_pred             CEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEEC-CCCeEEEecCCCEEEEC
Confidence            8898886  334557888887 99999999999999999 7799999999999999999987 45568999999999999


Q ss_pred             CCCeeEEEecC-CccEEEEEEEe-CCCCce---eeccc-----cccCCCCCCHHHHHhhcCCCHHHHHHhh-hcCC----
Q 042644          129 RGLLHFGFNVG-YEFATVFSVLN-SQNPGV---VSISD-----AAFSDFDTIDDLVRKFIPFLCWTIRVSE-MSHF----  193 (205)
Q Consensus       129 ~G~~H~~~N~g-~~~a~~l~~~~-s~~pg~---~~~~~-----~~f~~~~~~~evLa~af~v~~~~v~~l~-~~~~----  193 (205)
                      +|.+||++|.| +++++++++++ +++|+.   +.+++     ++|+  ++|++||+++|+++++++++|+ +.++    
T Consensus       105 ~G~~H~~~N~gg~e~l~~l~~~~~~~~pg~~~~f~l~g~~~~~~~~~--~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~  182 (416)
T 1uij_A          105 AGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQ--GFSHNILETSFHSEFEEINRVLFGEEEEQRQ  182 (416)
T ss_dssp             TTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGG--GSCHHHHHHHHTSCHHHHHHHHTCTTCGGGS
T ss_pred             CCCeEEEEecCCCCCEEEEEEeccCCCCCcceeeeecCCcccchhhh--cCCHHHHHHHhCcCHHHHHhhhhcccccccc
Confidence            99999999995 99999999986 456653   34443     4887  8999999999999999999999 6653    


Q ss_pred             CcccEE
Q 042644          194 QDNKLK  199 (205)
Q Consensus       194 ~~~~i~  199 (205)
                      +++.|.
T Consensus       183 ~~g~Iv  188 (416)
T 1uij_A          183 QEGVIV  188 (416)
T ss_dssp             BSSSEE
T ss_pred             CcceEE
Confidence            456554

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.92  E-value=4.6e-24  Score=186.69  Aligned_cols=159  Identities=17%  Similarity=0.159  Sum_probs=140.1

Q ss_pred             CCCCCCCCceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEE
Q 042644           28 PDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGF  107 (205)
Q Consensus        28 ~~~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~  107 (205)
                      +...+.++|+++.+..++..+.. |++++.+...++|+++  .+++.+++++||+..++|||+++.|++||++|++++.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~-gg~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v  270 (361)
T 2vqa_A          194 QTAKIEVPHTHNLLGQQPLVSLG-GNELRLASAKEFPGSF--NMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTV  270 (361)
T ss_dssp             CCCBCCSCCEEECTTSCCSEEET-TEEEEEECTTTCTTST--TCEEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEE
T ss_pred             cCCCCCcceEeccccCCCcccCC-CceEEEEehhhCcCcc--cceEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEE
Confidence            34567889999888766533666 8899999999999887  57889999999999999999988999999999999999


Q ss_pred             EeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHHHH
Q 042644          108 VDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRV  187 (205)
Q Consensus       108 ~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~  187 (205)
                      ++++++...+.|++||++++|+|.+|++.|.|+++++++++++..+++...++. +++  .+|++||+++|+++++++++
T Consensus       271 ~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~-~~~--~~~~~vl~~~f~~~~~~~~~  347 (361)
T 2vqa_A          271 FASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLST-WLA--SNPSSVLGNTFQISPELTKK  347 (361)
T ss_dssp             ECSTTCEEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCCEEHHH-HHH--TSCHHHHHHHHTCCHHHHTT
T ss_pred             EcCCCcEEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcceeeHHH-Hhh--hCCHHHHHHHHCcCHHHHHh
Confidence            887777668999999999999999999999999999999999999999888876 565  69999999999999999999


Q ss_pred             hhhcC
Q 042644          188 SEMSH  192 (205)
Q Consensus       188 l~~~~  192 (205)
                      |+++.
T Consensus       348 l~~~~  352 (361)
T 2vqa_A          348 LPVQD  352 (361)
T ss_dssp             SCCSC
T ss_pred             hhccC
Confidence            98544

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.92  E-value=1.9e-24  Score=193.44  Aligned_cols=135  Identities=14%  Similarity=0.236  Sum_probs=112.5

Q ss_pred             CeeEEEec-----cCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEE
Q 042644           52 YSSLTLVT-----AADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCV  126 (205)
Q Consensus        52 g~~~~~~~-----~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~  126 (205)
                      +|.++.+.     ...||+|+  ++++++++++|+|+++|| |++|+|++||++|+++++++++++ .+.++|++||+++
T Consensus        22 ~G~i~~l~~f~~~s~~l~~l~--~~~l~~~~l~p~gl~~Ph-h~~A~ei~yV~~G~g~~g~V~~~~-~~~~~l~~GDv~~   97 (418)
T 3s7i_A           22 NGRIRVLQRFDQRSRQFQNLQ--NHRIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVANGNN-RKSFNLDEGHALR   97 (418)
T ss_dssp             SEEEEEECCHHHHCGGGGGGT--TCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSC-EEEEEEETTEEEE
T ss_pred             CcEEEEecccCCcchhccccc--ceEEEEEEecCCceeeee-eCCCCeEEEEEEeeEEEEEEecCC-EEEEEecCCCEEE
Confidence            77999884     34566666  678889999999999999 889999999999999999999754 4689999999999


Q ss_pred             eCCCCeeEEEecCC-ccEEEEEE-EeCCCCceeec---c-----ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcC
Q 042644          127 FPRGLLHFGFNVGY-EFATVFSV-LNSQNPGVVSI---S-----DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSH  192 (205)
Q Consensus       127 vP~G~~H~~~N~g~-~~a~~l~~-~~s~~pg~~~~---~-----~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~  192 (205)
                      ||+|++||++|.|. +.++++++ +++++||.+..   +     .++|+  +||+++|++||+++++++++|+.+.
T Consensus        98 ~P~G~~h~~~N~g~~~~l~i~~l~~~s~~pg~~~~f~laG~~~~~s~~~--gf~~evLa~af~v~~~~v~kl~~~~  171 (418)
T 3s7i_A           98 IPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQSSYLQ--GFSRNTLEAAFNAEFNEIRRVLLEE  171 (418)
T ss_dssp             ECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEECSSCCSSCCCGGG--GSCHHHHHHHHTSCHHHHHHHTTSC
T ss_pred             ECCCCeEEEEecCCCccEEEEEeecCcCCCCccceeeccCCcchhHHhh--cCCHHHHHHHHCcCHHHHHhhhccc
Confidence            99999999999875 45666653 56667875432   2     35887  8999999999999999999999553

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.87  E-value=3.7e-21  Score=168.18  Aligned_cols=150  Identities=18%  Similarity=0.151  Sum_probs=126.5

Q ss_pred             CceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE
Q 042644           35 DFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV  114 (205)
Q Consensus        35 df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~  114 (205)
                      .|.|+.-..+. .... ||+++.++..++|.+.  ++++.++.+.||+..++|||+++.|++||++|++++.+++++++.
T Consensus        20 ~~~~~~~~~~~-~~~~-~G~~~~~~~~~~p~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~   95 (361)
T 2vqa_A           20 AFTYAFSKTPL-VLYD-GGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKV   95 (361)
T ss_dssp             CSEECGGGSCC-EEET-TEEEEEESTTTCTTCC--SCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCE
T ss_pred             ceEEEcccCCc-eecC-CceEEEeChhhCcccc--ceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcE
Confidence            36666544432 3234 8899999999999887  679999999999999999998899999999999999999877654


Q ss_pred             EEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCc---eeeccccccCCCCCCHHHHHhhcCCCHHHHHHhhhc
Q 042644          115 FQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPG---VVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMS  191 (205)
Q Consensus       115 ~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg---~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~l~~~  191 (205)
                      ..+.|++||+++||+|.+|+++|.|+++++++.+++..++.   .+.. .++|+  .+|.++|+++|+++.+.+++++..
T Consensus        96 ~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~~~~~~~~~~~-~~~~~--~~p~~vLa~~~~v~~~~~~~l~~~  172 (361)
T 2vqa_A           96 EIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSEGATFSV-TDWLS--HTPIAWVEENLGWTAAQVAQLPKK  172 (361)
T ss_dssp             EEEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESSTTCCTTSSEEH-HHHHH--TSCHHHHHHHHTCCHHHHTTSCSS
T ss_pred             EEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCccccceecH-hHHHH--hCCHHHHHHHhCcCHHHHHhcccc
Confidence            46899999999999999999999999999999999887664   3433 45666  799999999999999999988864

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.81  E-value=1e-18  Score=154.11  Aligned_cols=153  Identities=14%  Similarity=0.155  Sum_probs=125.7

Q ss_pred             CCCceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC
Q 042644           33 ASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR  112 (205)
Q Consensus        33 ~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~  112 (205)
                      ...|+++....+. .... ++.+..+...+++..+  ++++.+++++||+..++|||+.+.|++||++|++++.+.++++
T Consensus       223 ~~~~v~~~~~~~~-~~~~-~g~~~~~~~~~~~~~~--~~~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g  298 (385)
T 1j58_A          223 PYPFTYRLLEQEP-IESE-GGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDG  298 (385)
T ss_dssp             SSCSEEEGGGSCC-EECS-SEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETT
T ss_pred             CCCeeeecccCCC-eeCC-CceEEEeecccCCccc--ceEEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCC
Confidence            4567777654443 3333 6688888887777544  6899999999999999999988799999999999999876565


Q ss_pred             eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHHHHhhhcC
Q 042644          113 QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSH  192 (205)
Q Consensus       113 ~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~  192 (205)
                      +-.++.|++||++++|+|..|++.|.|++++++++++....+....+.. +++  .++.++++++|+++++++++|.+..
T Consensus       299 ~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v~~~~~~~d~~~~~-~l~--~~~~~v~~~~f~~~~~~~~~l~~~~  375 (385)
T 1j58_A          299 HARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQ-WLA--MLPETFVQAHLDLGKDFTDVLSKEK  375 (385)
T ss_dssp             EEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEHHH-HHH--TSCHHHHHHHHTCCHHHHTTCCSSC
T ss_pred             cEEEEEEcCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCccccCHHH-HHH--hCCHHHHHHHhCCCHHHHHhhhccC
Confidence            4457999999999999999999999999999999999877776655544 444  6899999999999999999998653

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.79  E-value=3.2e-19  Score=157.32  Aligned_cols=147  Identities=17%  Similarity=0.098  Sum_probs=121.7

Q ss_pred             ceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEE
Q 042644           36 FKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVF  115 (205)
Q Consensus        36 f~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~  115 (205)
                      +.|+....+.. ... ||+++.++..++|.++  ++++.++.+.||+..++|||+ +.|++||++|++++.+++.+++.+
T Consensus        48 ~~~~~~~~~~~-~~~-~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g~~~  122 (385)
T 1j58_A           48 MKFSFSDTHNR-LEK-GGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKGRSF  122 (385)
T ss_dssp             CEECGGGSCCE-EET-TEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTSCEE
T ss_pred             eEEEcccCCcc-ccC-CcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCCcEE
Confidence            66665433332 224 8899999999999988  789999999999999999997 889999999999999998777765


Q ss_pred             EEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceee--ccccccCCCCCCHHHHHhhcCCCHHHHHHhhh
Q 042644          116 QVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVS--ISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEM  190 (205)
Q Consensus       116 ~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~--~~~~~f~~~~~~~evLa~af~v~~~~v~~l~~  190 (205)
                      .+.|++||++++|+|.+|++.|.+ ++++++.+|+...+....  ...++|.  .++.++|+++|+++.++++++..
T Consensus       123 ~~~l~~GD~~~ip~g~~H~~~n~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~p~evla~~~~vs~~~~~~l~~  196 (385)
T 1j58_A          123 IDDVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDDGSFSENSTFQLTDWLA--HTPKEVIAANFGVTKEEISNLPG  196 (385)
T ss_dssp             EEEEETTEEEEECTTCCEEEEEEE-EEEEEEEEESCTTCCGGGEEEHHHHHH--TSCHHHHHHHHTCCTGGGTTSCS
T ss_pred             EEEeCCCCEEEECCCCeEEEEECC-CCEEEEEEECCCCccccchhhhhhhhh--cccHHHHHHHhCCCHHHHHhccc
Confidence            679999999999999999999987 568888889887665321  1245676  78999999999999988888765

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=99.78  E-value=1.5e-19  Score=126.41  Aligned_cols=75  Identities=17%  Similarity=0.199  Sum_probs=66.5

Q ss_pred             eeecccCCCCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe
Q 042644           37 KSTKLRDAGDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ  113 (205)
Q Consensus        37 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~  113 (205)
                      .|+.+.+.+.+ |.. | +++.+++.++|+|+++++|++|+++.+||+.+|||||+|+|++||++|+++++++++.++
T Consensus         3 pfnl~~~~p~~~n~~-G-~~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g~   78 (79)
T 1dgw_X            3 PFNLRSRDPIYSNNY-G-KLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQ   78 (79)
T ss_dssp             CEETTSSCCSEECSS-E-EEEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC--
T ss_pred             ccccccCCCCccCCC-C-cEEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCCC
Confidence            36777777777 665 5 679999999999999999999999999999999999999999999999999999987653

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.56  E-value=2.4e-14  Score=106.57  Aligned_cols=83  Identities=24%  Similarity=0.256  Sum_probs=72.1

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      ++.+.++.++||+..++|||+...|++||++|++++.+  .+++  ...|++||++++|+|..|++.|.+++++++++++
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~  113 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGI--VTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVV  113 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTC--EEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCe--EEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEE
Confidence            57889999999999999999877899999999999865  1344  6899999999999999999999999999999998


Q ss_pred             eCCCCce
Q 042644          150 NSQNPGV  156 (205)
Q Consensus       150 ~s~~pg~  156 (205)
                      ....+++
T Consensus       114 ~p~~~~~  120 (125)
T 3h8u_A          114 APGNAGF  120 (125)
T ss_dssp             ESTTCCC
T ss_pred             CCCcccc
Confidence            7665554

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=99.52  E-value=1.8e-14  Score=120.23  Aligned_cols=116  Identities=14%  Similarity=0.142  Sum_probs=86.2

Q ss_pred             CCCCCCCceeecccCCCCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEE
Q 042644           29 DRIFASDFKSTKLRDAGDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGF  107 (205)
Q Consensus        29 ~~~~~~df~~~~~~~~~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~  107 (205)
                      +.-+.+||.+..+..+... ++. | .+...-.   +...+.++++.++.++||+..++|+|++..|++||++|++++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~---~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v   79 (239)
T 2xlg_A            5 EIHTFDDIPMPKLADPLLIYTPA-N-EIFDIAS---CSAKDIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFH   79 (239)
T ss_dssp             -CCBCSCCCCCCCSSCEEEECTT-C-CEEEEEE---EEETTEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEE
T ss_pred             cccchhhCCCccccccceeecCC-c-eEEEEec---cCCCCCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEE
Confidence            3456777776666544433 443 3 3332211   12334578999999999999999999989999999999999976


Q ss_pred             --------EeC-------CCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEE-EEEE
Q 042644          108 --------VDT-------NRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATV-FSVL  149 (205)
Q Consensus       108 --------~~~-------~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~-l~~~  149 (205)
                              .+.       +++.+...+++||++++|+|.+|.+.|.+++++++ +.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A           80 STKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             EEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSSSCEEEEEEEE
T ss_pred             EecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEEE
Confidence                    221       12345789999999999999999999999999988 6666

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.51  E-value=1.7e-13  Score=106.68  Aligned_cols=81  Identities=16%  Similarity=0.170  Sum_probs=72.1

Q ss_pred             cceEEEEEEEcCCc-ccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCC-CeeEEEecCCccEEEE
Q 042644           69 LGLSVARTDLDVDG-MVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRG-LLHFGFNVGYEFATVF  146 (205)
Q Consensus        69 ~gis~~~~~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G-~~H~~~N~g~~~a~~l  146 (205)
                      .++.+.++.++||+ ..++|||+...|++||++|++.+.+   +++  .+.|++||++++|+| ..|++.|.|+++++++
T Consensus        44 ~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l  118 (162)
T 3l2h_A           44 RHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---END--QYPIAPGDFVGFPCHAAAHSISNDGTETLVCL  118 (162)
T ss_dssp             CSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTSCCEEEECCSSSCEEEE
T ss_pred             CeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCE--EEEeCCCCEEEECCCCceEEeEeCCCCCEEEE
Confidence            36899999999999 5899999888999999999999886   455  689999999999997 9999999999999999


Q ss_pred             EEEeCCCC
Q 042644          147 SVLNSQNP  154 (205)
Q Consensus       147 ~~~~s~~p  154 (205)
                      .+.....+
T Consensus       119 ~v~~p~~~  126 (162)
T 3l2h_A          119 VIGQRLDQ  126 (162)
T ss_dssp             EEEECCSE
T ss_pred             EEECCCCC
Confidence            88776543

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.50  E-value=2.6e-13  Score=96.55  Aligned_cols=79  Identities=16%  Similarity=0.166  Sum_probs=70.0

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      +.++.+.++.++||+..++|+|+...|++||++|++.+.+   +++  ...+++||++++|+|..|.+.|.+++++.++.
T Consensus        25 ~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~   99 (105)
T 1v70_A           25 SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE--EALLAPGMAAFAPAGAPHGVRNESASPALLLV   99 (105)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTSCEEEECCSSSCEEEEE
T ss_pred             CCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            4468899999999999999999777899999999999876   354  78999999999999999999999999999888


Q ss_pred             EEeC
Q 042644          148 VLNS  151 (205)
Q Consensus       148 ~~~s  151 (205)
                      ++..
T Consensus       100 v~~p  103 (105)
T 1v70_A          100 VTAP  103 (105)
T ss_dssp             EEES
T ss_pred             EeCC
Confidence            7653

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.48  E-value=1.8e-13  Score=97.95  Aligned_cols=77  Identities=14%  Similarity=0.072  Sum_probs=67.1

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ..+.+.+++++||+..++|.|+...|++||++|++++.+.  ++. ....|++||.+++|+|..|+..|.|+++++++.+
T Consensus        16 ~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~--~g~-~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v   92 (97)
T 2fqp_A           16 ERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETP--EGS-VTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEI   92 (97)
T ss_dssp             SSEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEET--TEE-EEEEECTTCCEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             CeEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeC--CCC-EEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEE
Confidence            3688999999999999999998766799999999998762  221 2689999999999999999999999999988775

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=99.46  E-value=1.4e-12  Score=104.92  Aligned_cols=83  Identities=19%  Similarity=0.159  Sum_probs=73.3

Q ss_pred             cceEEEEEEEcCCcc------cCCccCC--CCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           69 LGLSVARTDLDVDGM------VVPHTHP--RASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        69 ~gis~~~~~l~pgg~------~~pH~Hp--~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      ..+.+..+.++||+.      .++|+|+  +..|++||++|++.+.+.+..++.....+++||++++|+|..|++.|.|+
T Consensus        65 ~~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g~  144 (190)
T 1x82_A           65 GDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGD  144 (190)
T ss_dssp             TCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSS
T ss_pred             CCeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeEEEEECCc
Confidence            368888889999998      8899997  35799999999999998775566677999999999999999999999999


Q ss_pred             ccEEEEEEEeC
Q 042644          141 EFATVFSVLNS  151 (205)
Q Consensus       141 ~~a~~l~~~~s  151 (205)
                      +++++++++..
T Consensus       145 ~~~~~l~v~~~  155 (190)
T 1x82_A          145 EPFIFLAIYPA  155 (190)
T ss_dssp             SCEEEEEEEET
T ss_pred             ccEEEEEEECC
Confidence            99999887754

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.46  E-value=8e-13  Score=103.08  Aligned_cols=85  Identities=15%  Similarity=0.099  Sum_probs=71.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC----CeEEEEEEcCCCEEEeCCCCeeEEEecC-CccEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN----RQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFAT  144 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~----~~~~~~~l~~GDv~~vP~G~~H~~~N~g-~~~a~  144 (205)
                      .+.+.++.++||+..++|+| ...|++||++|++++.+.+.+    ++.....+++||++++|+|..|++.|.+ +++++
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H-~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~  118 (163)
T 1lr5_A           40 EVEVWLQTISPGQRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQ  118 (163)
T ss_dssp             SEEEEEEEECTTCBCCEEEE-SSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEE
T ss_pred             cEEEEEEEECCCCcCCCeEC-CCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEE
Confidence            68899999999999999999 568999999999999875421    1123789999999999999999999999 89999


Q ss_pred             EEEEEeCCCCc
Q 042644          145 VFSVLNSQNPG  155 (205)
Q Consensus       145 ~l~~~~s~~pg  155 (205)
                      +++++......
T Consensus       119 ~l~i~~~~~~~  129 (163)
T 1lr5_A          119 VLVIISRPPAK  129 (163)
T ss_dssp             EEEEEESSSCC
T ss_pred             EEEEECCCCcc
Confidence            99887654433

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.46  E-value=2.4e-12  Score=101.43  Aligned_cols=117  Identities=10%  Similarity=0.144  Sum_probs=86.0

Q ss_pred             CCCCCCCceeecccCC---CCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEE
Q 042644           29 DRIFASDFKSTKLRDA---GDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIA  105 (205)
Q Consensus        29 ~~~~~~df~~~~~~~~---~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v  105 (205)
                      ..+.++++....+...   .....+.|.....+..... +....++.+.++.++||+..++|||+ ..|++||++|++.+
T Consensus        12 ~iv~~~~~~W~~~~~~~~~~~~~~~~g~~~~~L~~~~~-g~~~~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~~   89 (167)
T 3ibm_A           12 RVLRERDYRWEGTEEEAYKAEGTHFSGARRQTLVGRPA-GQEAPAFETRYFEVEPGGYTTLERHE-HTHVVMVVRGHAEV   89 (167)
T ss_dssp             EEECEETTEETTCCCC---------CCEEEEEEECTTT-TCCSSSEEEEEEEECTTCBCCCBBCS-SCEEEEEEESEEEE
T ss_pred             ceeecCCcccccceeeeccCCCCcCCCcEEEEEECCCC-CCCCCcEEEEEEEECCCCCCCCccCC-CcEEEEEEeCEEEE
Confidence            3455666666654321   1111122555555544332 22344789999999999999999995 78999999999998


Q ss_pred             EEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC-CccEEEEEEEeCC
Q 042644          106 GFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQ  152 (205)
Q Consensus       106 ~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g-~~~a~~l~~~~s~  152 (205)
                      .+   +++  .+.|++||++++|+|..|++.|.+ ++++.+++++...
T Consensus        90 ~i---~~~--~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~  132 (167)
T 3ibm_A           90 VL---DDR--VEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD  132 (167)
T ss_dssp             EE---TTE--EEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred             EE---CCE--EEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence            86   455  789999999999999999999999 9999999887654

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.45  E-value=8.1e-13  Score=103.68  Aligned_cols=84  Identities=19%  Similarity=0.183  Sum_probs=73.1

Q ss_pred             CccceEEEEEEEcCCccc-CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCC--CeeEEEecCCccE
Q 042644           67 NTLGLSVARTDLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRG--LLHFGFNVGYEFA  143 (205)
Q Consensus        67 ~~~gis~~~~~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G--~~H~~~N~g~~~a  143 (205)
                      ....+.+.+++++||+.. ++|||+...|++||++|++++.+   +++  .+.|++||++++|+|  ..|.+.|.+++++
T Consensus        39 ~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~--~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~  113 (163)
T 3i7d_A           39 GLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQG--EHPMVPGDCAAFPAGDPNGHQFVNRTDAPA  113 (163)
T ss_dssp             TCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCCCBEEECCSSSCE
T ss_pred             CCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCE--EEEeCCCCEEEECCCCCcceEEEECCCCCE
Confidence            334789999999999965 89999776899999999999886   455  799999999999999  9999999999999


Q ss_pred             EEEEEEeCCCCc
Q 042644          144 TVFSVLNSQNPG  155 (205)
Q Consensus       144 ~~l~~~~s~~pg  155 (205)
                      +++.+.......
T Consensus       114 ~~l~v~~p~~~d  125 (163)
T 3i7d_A          114 TFLVVGTRTPTE  125 (163)
T ss_dssp             EEEEEEECCSCE
T ss_pred             EEEEEECCCCCC
Confidence            999988765543

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.45  E-value=1e-12  Score=95.02  Aligned_cols=79  Identities=20%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             ccceEEEEEEEcCCcccCCc--cCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPH--THPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATV  145 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH--~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~  145 (205)
                      ..++.+.++.++||+..++|  +|++..|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+++++++
T Consensus        18 ~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~   92 (113)
T 2gu9_A           18 LRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGH--TQALQAGSLIAIERGQAHEIRNTGDTPLKT   92 (113)
T ss_dssp             ETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTE--EEEECTTEEEEECTTCCEEEECCSSSCEEE
T ss_pred             CCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEcCCCCCEEE
Confidence            34688999999999998888  99768899999999999886   455  689999999999999999999999999998


Q ss_pred             EEEEeC
Q 042644          146 FSVLNS  151 (205)
Q Consensus       146 l~~~~s  151 (205)
                      +.++..
T Consensus        93 ~~v~~~   98 (113)
T 2gu9_A           93 VNFYHP   98 (113)
T ss_dssp             EEEEES
T ss_pred             EEEECC
Confidence            887754

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.45  E-value=1e-12  Score=101.07  Aligned_cols=84  Identities=19%  Similarity=0.193  Sum_probs=70.9

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ..+.+.++.+.||+..++|||+...|++||++|++++.+.+.... .++..|++||++++|+|..|++.|.+++++.+++
T Consensus        41 ~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~  120 (148)
T 2oa2_A           41 DHLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYS  120 (148)
T ss_dssp             SSCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEE
T ss_pred             CceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEE
Confidence            357888999999999999999877799999999999987543211 1348999999999999999999999999998888


Q ss_pred             EEeCC
Q 042644          148 VLNSQ  152 (205)
Q Consensus       148 ~~~s~  152 (205)
                      ++...
T Consensus       121 i~~~~  125 (148)
T 2oa2_A          121 IYAPP  125 (148)
T ss_dssp             EEESC
T ss_pred             EECCC
Confidence            76543

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=99.43  E-value=9.6e-14  Score=100.41  Aligned_cols=80  Identities=15%  Similarity=0.039  Sum_probs=69.0

Q ss_pred             CccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           67 NTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        67 ~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      ....+.+.|++++||+..++|+|+...|++||++|++++..  .++......+++||.+++|+|..|.+.|.|++|+++|
T Consensus        13 en~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~I   90 (98)
T 3lag_A           13 DNDEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFL   90 (98)
T ss_dssp             ESSSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEE
T ss_pred             cCCeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCceEEEEecCCcEEEEcCCCcEECEECCCCeEEEE
Confidence            34478999999999999999999988899999999998764  3444445779999999999999999999999999998


Q ss_pred             EE
Q 042644          147 SV  148 (205)
Q Consensus       147 ~~  148 (205)
                      .+
T Consensus        91 eV   92 (98)
T 3lag_A           91 EI   92 (98)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.41  E-value=1.1e-12  Score=99.36  Aligned_cols=85  Identities=19%  Similarity=0.233  Sum_probs=72.2

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ...+.+.++.++||+..++|+|+ ..|++||++|++++.+.. +++  ...+++||++++|+|..|.+.|.+++++.++.
T Consensus        36 ~~~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~~~-~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~  111 (145)
T 3ht1_A           36 ADRFVLTEFEVSPNGSTPPHFHE-WEHEIYVLEGSMGLVLPD-QGR--TEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLV  111 (145)
T ss_dssp             CCSEEEEEEEEEEEEECCCEECS-SCEEEEEEEECEEEEEGG-GTE--EEEECTTCEEEECTTCCBEEECCTTCCEEEEE
T ss_pred             CCcEEEEEEEECCCCcCCCccCC-CceEEEEEEeEEEEEEeE-CCE--EEEECCCCEEEECCCCeEEeEcCCCCCEEEEE
Confidence            34789999999999999999996 568889999999987211 344  78999999999999999999999999999998


Q ss_pred             EEeCCCCce
Q 042644          148 VLNSQNPGV  156 (205)
Q Consensus       148 ~~~s~~pg~  156 (205)
                      ++....+..
T Consensus       112 i~~~~~~~~  120 (145)
T 3ht1_A          112 VAPCERPPV  120 (145)
T ss_dssp             EEESCCCCC
T ss_pred             EECCCCCCe
Confidence            887665543

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.40  E-value=2.1e-12  Score=97.65  Aligned_cols=77  Identities=26%  Similarity=0.275  Sum_probs=68.2

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      +..+.+.++.++||+..++|+|++..|++||++|++++.+   +++  .+.|++||++++|+|..|++.|.+++++++++
T Consensus        54 ~~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~  128 (133)
T 1o4t_A           54 NKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK--DVPIKAGDVCFTDSGESHSIENTGNTDLEFLA  128 (133)
T ss_dssp             TSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCEEEEECCSSSCEEEEE
T ss_pred             CceEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCE--EEEeCCCcEEEECCCCcEEeEECCCCCEEEEE
Confidence            4457888999999999999999767899999999999876   455  78999999999999999999999999998887


Q ss_pred             EE
Q 042644          148 VL  149 (205)
Q Consensus       148 ~~  149 (205)
                      +.
T Consensus       129 v~  130 (133)
T 1o4t_A          129 VI  130 (133)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.40  E-value=1.9e-12  Score=96.12  Aligned_cols=77  Identities=14%  Similarity=0.261  Sum_probs=68.0

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .++.+.++.++||+..++|+|+. .|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.++ ++.++.+
T Consensus        39 ~~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v  111 (126)
T 4e2g_A           39 KNLMLNWVRIEPNTEMPAHEHPH-EQAGVMLEGTLELTI---GEE--TRVLRPGMAYTIPGGVRHRARTFED-GCLVLDI  111 (126)
T ss_dssp             SSCEEEEEEECTTCEEEEECCSS-EEEEEEEEECEEEEE---TTE--EEEECTTEEEEECTTCCEEEECCTT-CEEEEEE
T ss_pred             CCeEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEECCC-CEEEEEE
Confidence            36899999999999999999974 899999999999886   455  6899999999999999999999987 7888887


Q ss_pred             EeCC
Q 042644          149 LNSQ  152 (205)
Q Consensus       149 ~~s~  152 (205)
                      +...
T Consensus       112 ~~p~  115 (126)
T 4e2g_A          112 FSPP  115 (126)
T ss_dssp             EESC
T ss_pred             ECCC
Confidence            7643

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.39  E-value=2.7e-12  Score=100.31  Aligned_cols=79  Identities=13%  Similarity=0.106  Sum_probs=70.8

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ..+.+.++.++||+..++|||+ ..|++||++|++++.+   +++  .+.+++||++++|+|..|.+.|.+++++.++++
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~v~v---~g~--~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i  115 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHA-HVHAVMIHRGHGQCLV---GET--ISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCV  115 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCS-SCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEEECCCCccCceeCC-CcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            4788999999999999999996 5799999999999886   455  789999999999999999999999999999988


Q ss_pred             EeCCC
Q 042644          149 LNSQN  153 (205)
Q Consensus       149 ~~s~~  153 (205)
                      ++...
T Consensus       116 ~~~~~  120 (156)
T 3kgz_A          116 VNAAR  120 (156)
T ss_dssp             EESSC
T ss_pred             EeCCC
Confidence            86543

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.39  E-value=1.3e-12  Score=103.83  Aligned_cols=80  Identities=14%  Similarity=0.107  Sum_probs=71.5

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .|..+.+++++||+..++|.| ...|++||++|++++.+.  +++  ++.|++||.+ +|+|..|.+.|.|+++++++++
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H-~~eE~~~VLeGel~l~ld--~ge--~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V  150 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRT-NSIDYGIVLEGEIELELD--DGA--KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFI  150 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCC-SEEEEEEEEESCEEEECG--GGC--EEEECTTCEE-EECSCCBEEECCSSSCEEEEEE
T ss_pred             CCeEEEEEEECCCCCCCCeec-CceEEEEEEeCEEEEEEC--CCe--EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEE
Confidence            488999999999999999999 467999999999999863  144  6899999999 9999999999999999999999


Q ss_pred             EeCCCC
Q 042644          149 LNSQNP  154 (205)
Q Consensus       149 ~~s~~p  154 (205)
                      +....|
T Consensus       151 ~~P~~p  156 (172)
T 3es1_A          151 LIEAPA  156 (172)
T ss_dssp             EEECCC
T ss_pred             EcCCCc
Confidence            987766

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.39  E-value=1.1e-11  Score=97.68  Aligned_cols=78  Identities=14%  Similarity=0.089  Sum_probs=70.0

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .++.+.++++.||+..++|||+ ..|++||++|++.+.+   +++  .+.+++||++++|+|..|.+.|.+++++.++++
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~~~v---~g~--~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i  124 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQ-HAHGVMILKGRGHAMV---GRA--VSAVAPYDLVTIPGWSWHQFRAPADEALGFLCM  124 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCS-SCEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEECCTTSCEEEEEE
T ss_pred             CeEEEEEEEECCCCccCceeCC-CcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            4788999999999999999996 5799999999999876   455  789999999999999999999999999999988


Q ss_pred             EeCC
Q 042644          149 LNSQ  152 (205)
Q Consensus       149 ~~s~  152 (205)
                      ....
T Consensus       125 ~~~~  128 (166)
T 3jzv_A          125 VNAE  128 (166)
T ss_dssp             EESS
T ss_pred             EccC
Confidence            7653

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.37  E-value=3e-12  Score=94.52  Aligned_cols=76  Identities=22%  Similarity=0.182  Sum_probs=64.7

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      +.++.+.++.++||+..++|||+. .|++||++|++++.+   +++  .+.|++||.+++|+|..|.+.|.++..+.++.
T Consensus        33 ~~~~~v~~~~l~~G~~~~~H~H~~-~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~~  106 (114)
T 3fjs_A           33 EHRLEVMRMVLPAGKQVGSHSVAG-PSTIQCLEGEVEIGV---DGA--QRRLHQGDLLYLGAGAAHDVNAITNTSLLVTV  106 (114)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSS-CEEEEEEESCEEEEE---TTE--EEEECTTEEEEECTTCCEEEEESSSEEEEEEE
T ss_pred             CCCEEEEEEEECCCCccCceeCCC-cEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCcEEEEeCCCcEEEEEE
Confidence            447899999999999999999965 699999999999886   455  68999999999999999999998765554444


Q ss_pred             EE
Q 042644          148 VL  149 (205)
Q Consensus       148 ~~  149 (205)
                      ++
T Consensus       107 v~  108 (114)
T 3fjs_A          107 VL  108 (114)
T ss_dssp             EC
T ss_pred             Ee
Confidence            33

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.36  E-value=9.1e-12  Score=99.58  Aligned_cols=83  Identities=19%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             CCCccceEEEEEEEcCCcccC---CccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec-CC
Q 042644           65 GLNTLGLSVARTDLDVDGMVV---PHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV-GY  140 (205)
Q Consensus        65 ~l~~~gis~~~~~l~pgg~~~---pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~-g~  140 (205)
                      ...+..+.+.+++++||+..+   +|+|+. .|++||++|++.+.+.+ ++....+.|++||.+++|++.+|++.|. ++
T Consensus       111 ~~~~~~~~~~~~~~~pg~~~~~~~~h~h~~-~E~~~Vl~G~~~~~~~~-~~~~~~~~l~~GD~~~~~~~~~H~~~n~~~~  188 (198)
T 2bnm_A          111 TKRAPSLVPLVVDVLTDNPDDAKFNSGHAG-NEFLFVLEGEIHMKWGD-KENPKEALLPTGASMFVEEHVPHAFTAAKGT  188 (198)
T ss_dssp             CTTSTTCEEEEEEECCCCGGGCCCCCCCSS-CEEEEEEESCEEEEESC-TTSCEEEEECTTCEEEECTTCCEEEEESTTS
T ss_pred             CCCCCcceEEEEEEcCCCCCcccccccCCC-eEEEEEEeeeEEEEECC-cCCcccEEECCCCEEEeCCCCceEEEecCCC
Confidence            344557899999999999876   799965 89999999999998732 1112378999999999999999999999 99


Q ss_pred             ccEEEEEEE
Q 042644          141 EFATVFSVL  149 (205)
Q Consensus       141 ~~a~~l~~~  149 (205)
                      +++++++++
T Consensus       189 ~~~~~l~v~  197 (198)
T 2bnm_A          189 GSAKLIAVN  197 (198)
T ss_dssp             CCEEEEEEE
T ss_pred             CCeEEEEEe
Confidence            999988765

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.36  E-value=1.1e-11  Score=95.40  Aligned_cols=78  Identities=18%  Similarity=0.222  Sum_probs=69.2

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEE-EEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQ-VMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~-~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      ..++.+.++.++||+..++|+|+. .|++||++|++++.+   +++  . ..+++||++++|+|..|++.|.+++++.++
T Consensus        45 ~~~~~~~~~~~~pg~~~~~H~H~~-~E~~~Vl~G~~~~~~---~~~--~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l  118 (147)
T 2f4p_A           45 VFNTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQE---RGK--PARILKKGDVVEIPPNVVHWHGAAPDEELVHI  118 (147)
T ss_dssp             SSSCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEE---TTS--CCEEEETTCEEEECTTCCEEEEEBTTBCEEEE
T ss_pred             CCcEEEEEEEECCCCccCceECCC-ceEEEEEeCEEEEEE---CCE--EEEEECCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            347899999999999999999965 899999999999886   344  4 799999999999999999999999999988


Q ss_pred             EEEeC
Q 042644          147 SVLNS  151 (205)
Q Consensus       147 ~~~~s  151 (205)
                      +++..
T Consensus       119 ~v~~~  123 (147)
T 2f4p_A          119 GISTQ  123 (147)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            87754

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.36  E-value=5.9e-12  Score=92.52  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=65.3

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEE-EEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQV-MLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~-~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ++.+.++.+.||+..++||| ...|++||++|++++.+   +++  .. .+++||++++|+|..|++.|.+++++.++.+
T Consensus        26 ~~~~~~~~~~pg~~~~~H~H-~~~e~~~Vl~G~~~~~i---~~~--~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i   99 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPKHYS-NSYVHLIIIKGEMTLTL---EDQ--EPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVV   99 (117)
T ss_dssp             SCEEEEEEEETTCBCCCEEC-SSCEEEEEEESEEEEEE---TTS--CCEEEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCCEeC-CCcEEEEEEeCEEEEEE---CCE--EEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            57888899999999999999 57899999999999886   344  46 9999999999999999999999988888776


Q ss_pred             E
Q 042644          149 L  149 (205)
Q Consensus       149 ~  149 (205)
                      .
T Consensus       100 ~  100 (117)
T 2b8m_A          100 K  100 (117)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.36  E-value=9.6e-12  Score=92.55  Aligned_cols=75  Identities=17%  Similarity=0.247  Sum_probs=67.1

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ..+.+....++||...++||| +..|++||++|++++.+   +++  .+.+++||++++|+|..|.+.|.+++++.++++
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H-~~~Ei~~v~~G~~~~~i---~~~--~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i  105 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHSH-NEYELFIVIQGNAIIRI---NDE--DFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI  105 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBCC-SSEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             CCcEEEEEEECCCCccCCEec-CCeEEEEEEeCEEEEEE---CCE--EEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            468889999999999999999 68999999999999887   455  789999999999999999999999998887765


Q ss_pred             E
Q 042644          149 L  149 (205)
Q Consensus       149 ~  149 (205)
                      .
T Consensus       106 ~  106 (128)
T 4i4a_A          106 W  106 (128)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.35  E-value=8.4e-12  Score=91.20  Aligned_cols=76  Identities=16%  Similarity=0.163  Sum_probs=66.3

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      ++.+.++.++||...++|+|+ ..|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+  ++.++.++
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~v~  104 (116)
T 2pfw_A           33 ELMAVKIWFDKGAEGYVHAHR-HSQVSYVVEGEFHVNV---DGV--IKVLTAGDSFFVPPHVDHGAVCPT--GGILIDTF  104 (116)
T ss_dssp             TEEEEEEEECTTEEEEEECCS-SEEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEEESS--CEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCcEECC-cceEEEEEeeEEEEEE---CCE--EEEeCCCCEEEECcCCceeeEeCC--CcEEEEEE
Confidence            588999999999999999996 7899999999999886   455  689999999999999999999986  67777777


Q ss_pred             eCCC
Q 042644          150 NSQN  153 (205)
Q Consensus       150 ~s~~  153 (205)
                      ....
T Consensus       105 ~p~~  108 (116)
T 2pfw_A          105 SPAR  108 (116)
T ss_dssp             ESCC
T ss_pred             CCch
Confidence            6543

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.34  E-value=4.3e-12  Score=94.41  Aligned_cols=79  Identities=14%  Similarity=0.100  Sum_probs=66.3

Q ss_pred             ccceEEEEEEEcCCcccC-CccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVV-PHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      ..++.+.++.++||+..+ +|+|+...+++||++|++.+.+   +++  .+.+++||++++|+|..|.+.|.+++++.++
T Consensus        23 ~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~~--~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~   97 (125)
T 3cew_A           23 LTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DGE--KIELQAGDWLRIAPDGKRQISAASDSPIGFL   97 (125)
T ss_dssp             CSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TTE--EEEEETTEEEEECTTCCEEEEEBTTBCEEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence            457888889999999888 8999654445559999999886   455  6899999999999999999999998999887


Q ss_pred             EEEeC
Q 042644          147 SVLNS  151 (205)
Q Consensus       147 ~~~~s  151 (205)
                      ++...
T Consensus        98 ~i~~~  102 (125)
T 3cew_A           98 CIQVK  102 (125)
T ss_dssp             EEEEE
T ss_pred             EEEcC
Confidence            76543

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.33  E-value=5.5e-12  Score=94.34  Aligned_cols=77  Identities=14%  Similarity=0.157  Sum_probs=68.4

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ..++.+.++.++||+..++|+|+ ..|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+++++.+++
T Consensus        45 ~~~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~  118 (126)
T 1vj2_A           45 APNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLK---EQG--EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLC  118 (126)
T ss_dssp             CSSEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEEC---SSC--EEEEETTEEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             CCCEEEEEEEECCCCcCCceeCC-CcEEEEEEEeEEEEEE---CCE--EEEECCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            45789999999999999999996 7899999999999876   344  68999999999999999999999999998887


Q ss_pred             EEe
Q 042644          148 VLN  150 (205)
Q Consensus       148 ~~~  150 (205)
                      ++.
T Consensus       119 v~~  121 (126)
T 1vj2_A          119 LIP  121 (126)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            654

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.33  E-value=9.6e-12  Score=93.47  Aligned_cols=78  Identities=22%  Similarity=0.302  Sum_probs=59.8

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           71 LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        71 is~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      +.+.++.++||+..++|+|+...|++||++|++++.+   ++ +  ...+++||++++|+|..|.+.|.+++ +.++.++
T Consensus        43 ~~~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~---~~~~--~~~l~~Gd~~~ip~g~~H~~~~~~~~-~~~l~~~  116 (134)
T 2o8q_A           43 AHVIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEY---EDIG--AVMLEAGGSAFQPPGVRHRELRHSDD-LEVLEIV  116 (134)
T ss_dssp             EEEEEECC-----CCCEEECCSCEEEEEEESEEEEEE---TTTE--EEEEETTCEEECCTTCCEEEEEECTT-CEEEEEE
T ss_pred             EEEEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEE---CCcE--EEEecCCCEEEECCCCcEEeEeCCCC-eEEEEEE
Confidence            4566666778999999999776999999999999886   34 4  78999999999999999999998774 5777666


Q ss_pred             eCCCC
Q 042644          150 NSQNP  154 (205)
Q Consensus       150 ~s~~p  154 (205)
                      .....
T Consensus       117 ~p~~~  121 (134)
T 2o8q_A          117 SPAGF  121 (134)
T ss_dssp             SSTTC
T ss_pred             CCCch
Confidence            55443

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.30  E-value=1e-11  Score=104.03  Aligned_cols=78  Identities=10%  Similarity=0.111  Sum_probs=67.3

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC-ccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY-EFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~-~~a~~l  146 (205)
                      ...+.+.+++++||+..+.|+|+...|++||++|++++.+   +++  ++.|++||++++|+|..|++.|.|+ ++++++
T Consensus       176 ~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i---~~~--~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l  250 (261)
T 1rc6_A          176 GFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL---DNN--WIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYI  250 (261)
T ss_dssp             TCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES---SSC--EEEEETTCEEEECSSEEEEEEEC----CEEEE
T ss_pred             CCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEeCCCCcCEEEE
Confidence            4468899999999999999999878899999999999876   455  6899999999999999999999999 999988


Q ss_pred             EEEe
Q 042644          147 SVLN  150 (205)
Q Consensus       147 ~~~~  150 (205)
                      .+.+
T Consensus       251 ~~~d  254 (261)
T 1rc6_A          251 YSKD  254 (261)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7765

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.8e-11  Score=96.58  Aligned_cols=75  Identities=17%  Similarity=0.095  Sum_probs=65.5

Q ss_pred             ceEEEEEEEcC-CcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           70 GLSVARTDLDV-DGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        70 gis~~~~~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      -+...+++++| |+...+|.|....|++||++|++.+.+   +++  .+.|++||.+++|+|..|.+.|.++++++++.+
T Consensus        87 ~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl---~g~--~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A           87 YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV---CKN--KFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEE---CCE--EEEEcCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            47788899999 777666666688999999999999987   455  789999999999999999999999999988876


Q ss_pred             E
Q 042644          149 L  149 (205)
Q Consensus       149 ~  149 (205)
                      .
T Consensus       162 q  162 (166)
T 2vpv_A          162 Q  162 (166)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.28  E-value=4.7e-11  Score=87.03  Aligned_cols=73  Identities=19%  Similarity=0.343  Sum_probs=62.8

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .++.+.++.+.||+..++|+|+ ..|++||++|++.+.+   +++  ...+++||++++|+|..|.+.|.+  ++.++.+
T Consensus        38 ~~~~~~~~~~~~g~~~~~H~H~-~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~~~v  109 (115)
T 1yhf_A           38 QDLGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITI---DQE--TYRVAEGQTIVMPAGIPHALYAVE--AFQMLLV  109 (115)
T ss_dssp             TTEEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTSCEEEEESS--CEEEEEE
T ss_pred             CceEEEEEEECCCCccCCEECC-CcEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECC--CceEEEE
Confidence            3678899999999999999996 6899999999999876   455  689999999999999999999986  4666554


Q ss_pred             E
Q 042644          149 L  149 (205)
Q Consensus       149 ~  149 (205)
                      +
T Consensus       110 ~  110 (115)
T 1yhf_A          110 V  110 (115)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.27  E-value=2.7e-11  Score=96.54  Aligned_cols=78  Identities=21%  Similarity=0.175  Sum_probs=66.2

Q ss_pred             CccceEEEEEEEcCCcccC--CccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEE
Q 042644           67 NTLGLSVARTDLDVDGMVV--PHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFAT  144 (205)
Q Consensus        67 ~~~gis~~~~~l~pgg~~~--pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~  144 (205)
                      ....+.+.+++++||+..+  +|+| ...|++||++|++.+.+   +++  .+.|++||++++|+|.+|++.|.+++++ 
T Consensus       100 ~~~~~~~~~~~~~pg~~~~~~~H~h-~~~E~~~Vl~G~~~~~~---~~~--~~~l~~GD~i~i~~~~~H~~~n~~~~~~-  172 (192)
T 1y9q_A          100 ADTGLEIFEITLLDHHQQMSSPHAL-GVIEYIHVLEGIMKVFF---DEQ--WHELQQGEHIRFFSDQPHGYAAVTEKAV-  172 (192)
T ss_dssp             TTTTEEEEEEEECTTCEEEECCCST-TCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEEECSSSEEEEESSSCEE-
T ss_pred             CCCcEEEEEEEECCCCCccCCCCCC-CCEEEEEEEEeEEEEEE---CCE--EEEeCCCCEEEEcCCCCeEeECCCCCcE-
Confidence            3457899999999999765  6777 46799999999999886   455  6899999999999999999999999999 


Q ss_pred             EEEEEeC
Q 042644          145 VFSVLNS  151 (205)
Q Consensus       145 ~l~~~~s  151 (205)
                      +++++..
T Consensus       173 ~l~v~~~  179 (192)
T 1y9q_A          173 FQNIVAY  179 (192)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            7766543

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.24  E-value=8e-11  Score=103.17  Aligned_cols=89  Identities=10%  Similarity=-0.029  Sum_probs=73.8

Q ss_pred             CeeEEEeccC-CCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCC
Q 042644           52 YSSLTLVTAA-DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRG  130 (205)
Q Consensus        52 g~~~~~~~~~-~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G  130 (205)
                      |+.+..++.. ..+.+.+  +++....|+||+..++|||+.+ |++||++|++++.+   +++  +..+++||+++||++
T Consensus       250 G~~~~~~np~t~~~~~~t--i~~~~~~l~pG~~~~~H~h~~~-ev~~v~~G~g~~~v---~~~--~~~~~~GD~~~vP~~  321 (354)
T 2d40_A          250 GYKMRYVNPVTGGYPMPS--MGAFLQLLPKGFASRVARTTDS-TIYHVVEGSGQVII---GNE--TFSFSAKDIFVVPTW  321 (354)
T ss_dssp             BEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCBEESSC-EEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTT
T ss_pred             CeEEEEeCCCcCCCCCCc--ceeEEEEECCCCCCCceecCCc-EEEEEEeCeEEEEE---CCE--EEEEcCCCEEEECCC
Confidence            7778877743 5666664  5566778999999999999776 99999999999987   455  799999999999999


Q ss_pred             CeeEEEecCCccEEEEEEEe
Q 042644          131 LLHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus       131 ~~H~~~N~g~~~a~~l~~~~  150 (205)
                      ..|.+.|.  +++.++++.+
T Consensus       322 ~~H~~~n~--e~~~l~~~~d  339 (354)
T 2d40_A          322 HGVSFQTT--QDSVLFSFSD  339 (354)
T ss_dssp             CCEEEEEE--EEEEEEEEES
T ss_pred             CeEEEEeC--CCEEEEEEcC
Confidence            99999994  7788777644

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=99.24  E-value=5.2e-11  Score=85.76  Aligned_cols=77  Identities=16%  Similarity=0.087  Sum_probs=63.1

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeE-EEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEM-LFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei-~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      +.++.+.++.+.||...++|+|+...|+ +||++|++++.+.  +++  ...+++||++++|+|..|++.|.++  +.++
T Consensus        30 ~~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~--~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~--~~~l  103 (110)
T 2q30_A           30 SENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGD--GDA--VIPAPRGAVLVAPISTPHGVRAVTD--MKVL  103 (110)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECG--GGC--EEEECTTEEEEEETTSCEEEEESSS--EEEE
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeC--CCE--EEEECCCCEEEeCCCCcEEEEEcCC--cEEE
Confidence            3467889999999999999999755788 8999999998762  134  6899999999999999999999765  4555


Q ss_pred             EEEe
Q 042644          147 SVLN  150 (205)
Q Consensus       147 ~~~~  150 (205)
                      .++.
T Consensus       104 ~~~~  107 (110)
T 2q30_A          104 VTIA  107 (110)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            5554

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.23  E-value=5e-11  Score=98.93  Aligned_cols=79  Identities=11%  Similarity=0.031  Sum_probs=68.8

Q ss_pred             ceEEEEEEEcC-CcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           70 GLSVARTDLDV-DGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        70 gis~~~~~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      -+.+..+.++| |+..++|||+ ..|++||++|++++.+   +++  ...|++||.+++|+|..|.++|.|+++++++.+
T Consensus       144 ~~~~~~~~~~p~g~~~~~H~H~-~~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v  217 (243)
T 3h7j_A          144 WVEIMLAKIPGNGGEMPFHKHR-NEQIGICIGGGYDMTV---EGC--TVEMKFGTAYFCEPREDHGAINRSEKESKSINI  217 (243)
T ss_dssp             TEEEEEEEECTTTEEEEEECCS-SEEEEEECSSCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             eeEEEEEEECCCCCcCCCEeCC-CcEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            35677888999 8889999996 4799999999999886   455  688999999999999999999999999999998


Q ss_pred             EeCCCC
Q 042644          149 LNSQNP  154 (205)
Q Consensus       149 ~~s~~p  154 (205)
                      +.....
T Consensus       218 ~~p~~~  223 (243)
T 3h7j_A          218 FFPPRY  223 (243)
T ss_dssp             EESCSS
T ss_pred             EcCChh
Confidence            875443

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.22  E-value=1.8e-10  Score=97.21  Aligned_cols=76  Identities=9%  Similarity=0.121  Sum_probs=67.8

Q ss_pred             cceEEEEEEEcCCcccCC-ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC-ccEEEE
Q 042644           69 LGLSVARTDLDVDGMVVP-HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY-EFATVF  146 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~-~~a~~l  146 (205)
                      ..+.+.+++++||+..+. |+|+ ..|++||++|++++.+   +++  .+.|++||++++|++.+|+++|.++ ++++++
T Consensus       180 ~~~~~~~~~l~pg~~~~~~H~H~-~~E~~yVl~G~~~~~i---~~~--~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l  253 (274)
T 1sef_A          180 FDMNMHILSFEPGASHAYIETHV-QEHGAYLISGQGMYNL---DNE--WYPVEKGDYIFMSAYVPQAAYAVGREEPLMYV  253 (274)
T ss_dssp             CSEEEEEEEECTTCBCSSCBCCS-CCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEECSSSCEEEE
T ss_pred             CCEEEEEEEECCCCccCcceecc-CeEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEeCCCCCCEEEE
Confidence            478899999999999888 9994 6799999999999987   455  7899999999999999999999999 999888


Q ss_pred             EEEe
Q 042644          147 SVLN  150 (205)
Q Consensus       147 ~~~~  150 (205)
                      +..+
T Consensus       254 ~~~~  257 (274)
T 1sef_A          254 YSKD  257 (274)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            7754

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.21  E-value=9.3e-11  Score=100.65  Aligned_cols=79  Identities=15%  Similarity=0.113  Sum_probs=69.7

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ..+++..+.+.||+..++|||++..|++||++|++++.+   +++  ...|++||++++|+|.+|.+.|.++ +++++.+
T Consensus        44 ~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~n~~~-~~~~~~~  117 (337)
T 1y3t_A           44 DLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DGE--RYLLISGDYANIPAGTPHSYRMQSH-RTRLVSY  117 (337)
T ss_dssp             SSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECST-TEEEEEE
T ss_pred             CeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCcEEEEECCC-CeEEEEE
Confidence            368999999999999999999768999999999999986   455  6899999999999999999999987 6888888


Q ss_pred             EeCCC
Q 042644          149 LNSQN  153 (205)
Q Consensus       149 ~~s~~  153 (205)
                      ++...
T Consensus       118 ~~p~~  122 (337)
T 1y3t_A          118 TMKGN  122 (337)
T ss_dssp             EETTS
T ss_pred             ECCCC
Confidence            76554

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.21  E-value=1.6e-10  Score=82.64  Aligned_cols=78  Identities=8%  Similarity=-0.007  Sum_probs=67.3

Q ss_pred             eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCC-CCceeeccc---cccCCCCCCHHHHHhhcCCCHHHHHHh
Q 042644          113 QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQ-NPGVVSISD---AAFSDFDTIDDLVRKFIPFLCWTIRVS  188 (205)
Q Consensus       113 ~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~-~pg~~~~~~---~~f~~~~~~~evLa~af~v~~~~v~~l  188 (205)
                      +.++.+|++||+++||+|.+-...+.+  .+.++++-++. ++..+.+++   +++.  .+|.++|+.||+++++++++|
T Consensus         4 ~~~~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~tna~~~~~~~LAG~~~Svl~--~l~~evla~aF~~s~ee~~~l   79 (93)
T 1dgw_Y            4 RRYAATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGVNAENNERNFLAGHKENVIR--QIPRQVSDLTFPGSGEEVEEL   79 (93)
T ss_dssp             EEEEEEECTTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSTTBSTT--TSCHHHHHHHSSSCTHHHHHH
T ss_pred             chhhceecCCcEEEECCCCceeEEecC--CeEEEEEEecCCCCeeeeccCCcccHHH--hCCHHHHHHHcCCCHHHHHHH
Confidence            345789999999999999999998864  49998885555 888888865   8888  899999999999999999999


Q ss_pred             hhcCCC
Q 042644          189 EMSHFQ  194 (205)
Q Consensus       189 ~~~~~~  194 (205)
                      +.++++
T Consensus        80 ~~~q~e   85 (93)
T 1dgw_Y           80 LENQKE   85 (93)
T ss_dssp             TTSCCC
T ss_pred             HhcCCC
Confidence            988754

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.19  E-value=2.8e-10  Score=83.06  Aligned_cols=72  Identities=11%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      .+.+..+.+.||...++|+|+ ..|++||++|++.+.+   +++  .+.|++||++++|+|.+|.+.|.  +++.++.+.
T Consensus        37 ~~~~~~~~~~~g~~~~~H~h~-~~e~~~vl~G~~~~~i---~~~--~~~l~~Gd~i~i~~~~~H~~~~~--~~~~~~~i~  108 (114)
T 2ozj_A           37 RVQISLFSFADGESVSEEEYF-GDTLYLILQGEAVITF---DDQ--KIDLVPEDVLMVPAHKIHAIAGK--GRFKMLQIT  108 (114)
T ss_dssp             SEEEEEEEEETTSSCCCBCCS-SCEEEEEEEEEEEEEE---TTE--EEEECTTCEEEECTTCCBEEEEE--EEEEEEEEE
T ss_pred             CceEEEEEECCCCccccEECC-CCeEEEEEeCEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEeC--CCcEEEEEE
Confidence            466777788999999999995 6899999999999886   455  78999999999999999999986  466666544

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.18  E-value=1.8e-10  Score=85.98  Aligned_cols=74  Identities=14%  Similarity=0.106  Sum_probs=62.0

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ..+++..+.++||+..+.|  ....|++||++|++++.+   +++  ...|++||+++||+|..|++.|.+ ++++++.+
T Consensus        38 ~~~~~~~~~~~pG~~~~~H--~~~~E~~~Vl~G~~~~~~---~g~--~~~l~~GD~v~ip~g~~H~~~~~~-~~~~~l~v  109 (119)
T 3lwc_A           38 GPITIGYGRYAPGQSLTET--MAVDDVMIVLEGRLSVST---DGE--TVTAGPGEIVYMPKGETVTIRSHE-EGALTAYV  109 (119)
T ss_dssp             CCCEEEEEEECTTCEEEEE--CSSEEEEEEEEEEEEEEE---TTE--EEEECTTCEEEECTTCEEEEEEEE-EEEEEEEE
T ss_pred             CCEEEEEEEECCCCCcCcc--CCCCEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCEEEEEcCC-CCeEEEEE
Confidence            3688999999999876555  477899999999999987   455  689999999999999999998875 67777766


Q ss_pred             Ee
Q 042644          149 LN  150 (205)
Q Consensus       149 ~~  150 (205)
                      ..
T Consensus       110 ~~  111 (119)
T 3lwc_A          110 TY  111 (119)
T ss_dssp             EE
T ss_pred             EC
Confidence            65

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.18  E-value=5.2e-11  Score=104.38  Aligned_cols=78  Identities=18%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ..+.+....++||+..++|+|+ ..|++||++|++.+..+  +++  .+.+++||++++|+|.+|.+.|.|+++++++.+
T Consensus        98 ~~l~~~~~~l~PG~~~~~H~H~-~~e~~yVl~G~g~~t~v--~g~--~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v  172 (354)
T 2d40_A           98 ATLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAV--DGE--RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDG  172 (354)
T ss_dssp             SSCEEEEEEECTTCEEEEEEES-SCEEEEEEECSSCEEEE--TTE--EEECCTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEEECCCCCcCCeecC-cceEEEEEEEEEEEEEE--CCE--EEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            3678999999999999999995 67999999999988444  354  689999999999999999999999999999887


Q ss_pred             EeC
Q 042644          149 LNS  151 (205)
Q Consensus       149 ~~s  151 (205)
                      .+.
T Consensus       173 ~d~  175 (354)
T 2d40_A          173 LDL  175 (354)
T ss_dssp             ECH
T ss_pred             ECc
Confidence            653

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=99.15  E-value=2.6e-10  Score=99.62  Aligned_cols=82  Identities=16%  Similarity=0.145  Sum_probs=65.5

Q ss_pred             ceEEEEEEEcCCc-ccC--CccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           70 GLSVARTDLDVDG-MVV--PHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        70 gis~~~~~l~pgg-~~~--pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      .+++. ..+.|++ ..+  +|||++..|++||++|++++.+.+.+++...+.|++||++++|+|.+|++.|.++++ +++
T Consensus        47 ~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l  124 (350)
T 1juh_A           47 AFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMT  124 (350)
T ss_dssp             SCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEE
T ss_pred             cEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEE
Confidence            46666 4555655 455  899987899999999999999876444444799999999999999999999998876 777


Q ss_pred             EEEeCCC
Q 042644          147 SVLNSQN  153 (205)
Q Consensus       147 ~~~~s~~  153 (205)
                      .++....
T Consensus       125 ~v~~p~~  131 (350)
T 1juh_A          125 GVIVPGG  131 (350)
T ss_dssp             EEEESSC
T ss_pred             EEEcCcc
Confidence            7776543

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.15  E-value=6e-10  Score=92.71  Aligned_cols=78  Identities=9%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             ccceEEEEEEEcCCcccCC-ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVP-HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      +..+.+..++++||+..+. |.| ...|.+||++|++.+.+   +++  ++.|++||+++++++..|+++|.|+++++++
T Consensus       162 ~~~~~~~~~tl~PG~~~~~~~~h-~~ee~~~vLeG~~~~~~---~~~--~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl  235 (246)
T 1sfn_A          162 AFDFMVSTMSFAPGASLPYAEVH-YMEHGLLMLEGEGLYKL---EEN--YYPVTAGDIIWMGAHCPQWYGALGRNWSKYL  235 (246)
T ss_dssp             TCSEEEEEEEECTTCBCSSCBCC-SSCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             CCCeEEEEEEECCCCccCcccCC-CceEEEEEEECEEEEEE---CCE--EEEcCCCCEEEECCCCCEEEEcCCCCCEEEE
Confidence            4578999999999998886 556 67899999999999886   565  7899999999999999999999999999998


Q ss_pred             EEEeC
Q 042644          147 SVLNS  151 (205)
Q Consensus       147 ~~~~s  151 (205)
                      .+-+-
T Consensus       236 ~~kd~  240 (246)
T 1sfn_A          236 LYKDM  240 (246)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            87764

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.14  E-value=6.5e-10  Score=95.34  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             EEEEEEcC-CcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeC
Q 042644           73 VARTDLDV-DGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNS  151 (205)
Q Consensus        73 ~~~~~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s  151 (205)
                      ...+.+.| |...++|||+...|++||++|++++.+   +++  ++.|++||++++|++..|++.|.++ ++.++.+++.
T Consensus       219 ~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i---~~~--~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~  292 (337)
T 1y3t_A          219 IVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DGQ--EIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVP  292 (337)
T ss_dssp             EEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEES
T ss_pred             EEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcC
Confidence            34455655 567789999778999999999999987   455  7899999999999999999999988 8999888866


Q ss_pred             CCC
Q 042644          152 QNP  154 (205)
Q Consensus       152 ~~p  154 (205)
                      ...
T Consensus       293 ~~~  295 (337)
T 1y3t_A          293 GLF  295 (337)
T ss_dssp             STT
T ss_pred             ccH
Confidence            543

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.11  E-value=2.9e-10  Score=94.31  Aligned_cols=74  Identities=16%  Similarity=0.102  Sum_probs=64.8

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEE-eCCCCeeEEEecCCccEEEEEEE
Q 042644           71 LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCV-FPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        71 is~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~-vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      ..+.++.++||...++|||+ ..|++||++|++++.+   +++  ...|++||.++ +|+|..|.+.|.++++++++.+.
T Consensus        34 ~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~~---~~~--~~~l~~Gd~i~~ip~~~~H~~~n~~~~~~~~l~i~  107 (243)
T 3h7j_A           34 TEVLMSYVPPHTNVEPHQHK-EVQIGMVVSGELMMTV---GDV--TRKMTALESAYIAPPHVPHGARNDTDQEVIAIDIK  107 (243)
T ss_dssp             EEEEEEEECTTEEEEEECCS-SEEEEEEEESEEEEEE---TTE--EEEEETTTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEECCCCccCCEECC-CcEEEEEEEeEEEEEE---CCE--EEEECCCCEEEEcCCCCcEeeEeCCCCcEEEEEEe
Confidence            46667789999999999996 6899999999999886   455  68999999885 99999999999999999888765


Q ss_pred             e
Q 042644          150 N  150 (205)
Q Consensus       150 ~  150 (205)
                      .
T Consensus       108 r  108 (243)
T 3h7j_A          108 R  108 (243)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.11  E-value=2.8e-10  Score=82.24  Aligned_cols=67  Identities=18%  Similarity=0.223  Sum_probs=52.9

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           73 VARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        73 ~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ..++.+.||. .++|+|+...|++||++|++++.+   ++ +  ...+++||++++|+|..|.+.|.  +++.++.
T Consensus        30 ~~~~~~~~g~-~~~H~H~~~~E~~~Vl~G~~~~~~---~~~~--~~~l~~Gd~~~ip~~~~H~~~~~--~~~~~l~   97 (107)
T 2i45_A           30 QFHLVKLLGD-YGWHTHGYSDKVLFAVEGDMAVDF---ADGG--SMTIREGEMAVVPKSVSHRPRSE--NGCSLVL   97 (107)
T ss_dssp             EEEEEEEEEE-CCCBCC--CCEEEEESSSCEEEEE---TTSC--EEEECTTEEEEECTTCCEEEEEE--EEEEEEE
T ss_pred             EEEEEECCCC-CcceeCCCCCEEEEEEeCEEEEEE---CCCc--EEEECCCCEEEECCCCcEeeEeC--CCeEEEE
Confidence            4456677776 469999766899999999999886   33 5  68999999999999999999995  4565554

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.10  E-value=2.9e-10  Score=96.49  Aligned_cols=77  Identities=17%  Similarity=0.134  Sum_probs=67.2

Q ss_pred             ccceEEEEEEEcCCccc--CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEE
Q 042644           68 TLGLSVARTDLDVDGMV--VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATV  145 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~--~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~  145 (205)
                      +..+.+.+++++||+..  +.|.| ...|++||++|++++.+   +++  .+.|++||.+++|+|..|.+.|.|++++++
T Consensus        65 ~~~~~~~~~~l~PG~~~~~~~h~H-~~eE~~~Vl~G~l~v~v---~g~--~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~  138 (278)
T 1sq4_A           65 AETFSQYIVELAPNGGSDKPEQDP-NAEAVLFVVEGELSLTL---QGQ--VHAMQPGGYAFIPPGADYKVRNTTGQHTRF  138 (278)
T ss_dssp             CCSCEEEEEEEEEEEEESSCCCCT-TEEEEEEEEESCEEEEE---SSC--EEEECTTEEEEECTTCCEEEECCSSSCEEE
T ss_pred             CCcEEEEEEEECCCCccCCCCcCC-CceEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCcEEEEECCCCCEEE
Confidence            44689999999999876  55778 57899999999999987   344  689999999999999999999999999998


Q ss_pred             EEEEe
Q 042644          146 FSVLN  150 (205)
Q Consensus       146 l~~~~  150 (205)
                      +.+..
T Consensus       139 l~v~~  143 (278)
T 1sq4_A          139 HWIRK  143 (278)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88764

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=99.10  E-value=2e-10  Score=81.54  Aligned_cols=70  Identities=26%  Similarity=0.481  Sum_probs=53.7

Q ss_pred             CccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           67 NTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        67 ~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      ++..+.+.++.    +..++|+|+...|++||++|++.+.+   +++  ...+++||++++|+|..|.+.|.+  ++.++
T Consensus        29 ~~~~~~~~~~~----~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l   97 (102)
T 3d82_A           29 NDYQFKLVKVE----GEFVWHEHADTDEVFIVMEGTLQIAF---RDQ--NITLQAGEMYVIPKGVEHKPMAKE--ECKIM   97 (102)
T ss_dssp             TTEEEEEEEEE----EECCCBCCTTCCEEEEEEESEEEEEC---SSC--EEEEETTEEEEECTTCCBEEEEEE--EEEEE
T ss_pred             CCCEEEEEEEC----CCCCceeCCCCcEEEEEEeCEEEEEE---CCE--EEEEcCCCEEEECCCCeEeeEcCC--CCEEE
Confidence            33344544442    45899999776899999999999876   344  689999999999999999999973  44444


Q ss_pred             E
Q 042644          147 S  147 (205)
Q Consensus       147 ~  147 (205)
                      .
T Consensus        98 ~   98 (102)
T 3d82_A           98 I   98 (102)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.09  E-value=4.3e-10  Score=94.16  Aligned_cols=78  Identities=18%  Similarity=0.129  Sum_probs=67.2

Q ss_pred             cceEEEEEEEcCCcccCCccC-CCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTH-PRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~H-p~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ..+.+.+++++||+....|.| +...|++||++|++++.+   +++  .+.|++||.+++|++..|.+.|.|+++++++.
T Consensus        57 ~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~--~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~  131 (261)
T 1rc6_A           57 ASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGK--TFALSEGGYLYCPPGSLMTFVNAQAEDSQIFL  131 (261)
T ss_dssp             CSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCCCEEEECSSSCEEEEE
T ss_pred             CcEEEEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEeCCCCCEEEEE
Confidence            467889999999998766654 456789999999999987   455  78999999999999999999999999999988


Q ss_pred             EEeC
Q 042644          148 VLNS  151 (205)
Q Consensus       148 ~~~s  151 (205)
                      +...
T Consensus       132 v~~~  135 (261)
T 1rc6_A          132 YKRR  135 (261)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7743

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.09  E-value=1.2e-09  Score=96.84  Aligned_cols=92  Identities=16%  Similarity=0.087  Sum_probs=73.9

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~  131 (205)
                      |..+..++..+- +-....+.+....++||+..++|.|. ..|++||++|++.+.+   +++  +..+++||++++|+|.
T Consensus       276 ~~~l~l~nP~~g-~~~~~tl~~~~~~l~PG~~~~~HrH~-~~~v~~VleG~G~~~V---~ge--~~~~~~GD~~~iP~g~  348 (394)
T 3bu7_A          276 GLILRYTNPQTG-GHPMLTMGASMQMLRPGEHTKAHRHT-GNVIYNVAKGQGYSIV---GGK--RFDWSEHDIFCVPAWT  348 (394)
T ss_dssp             BEEEEECCTTTS-SCSSSSCEEEEEEECTTCBCCCEEES-SCEEEEEEECCEEEEE---TTE--EEEECTTCEEEECTTC
T ss_pred             ceEEEEeCCCCC-CCCCCeeeEEEEEECCCCcCCCcccC-CcEEEEEEeCeEEEEE---CCE--EEEEeCCCEEEECCCC
Confidence            445555554432 21233578889999999999999996 5689999999997766   455  7999999999999999


Q ss_pred             eeEEEecC-CccEEEEEEEe
Q 042644          132 LHFGFNVG-YEFATVFSVLN  150 (205)
Q Consensus       132 ~H~~~N~g-~~~a~~l~~~~  150 (205)
                      .|.+.|.| ++++.++++.+
T Consensus       349 ~H~~~N~g~~e~~~ll~i~D  368 (394)
T 3bu7_A          349 WHEHCNTQERDDACLFSFND  368 (394)
T ss_dssp             CEEEEECCSSCCEEEEEEES
T ss_pred             eEEeEeCCCCCCeEEEEeeC
Confidence            99999998 79998887754

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=99.09  E-value=2.7e-10  Score=100.21  Aligned_cols=79  Identities=19%  Similarity=0.155  Sum_probs=69.3

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      +..+.+....+.||+..++|.|. ..|++||++|++....+  +|+  +..+++||++++|+|..|...|.|+++++++.
T Consensus       100 t~~L~a~~~~l~PG~~~~~HrH~-~~ev~~VleG~G~~~~v--dG~--~~~~~~GD~v~iP~g~~H~~~N~gde~l~~l~  174 (368)
T 3nw4_A          100 SPTMWAAIQYLGPRETAPEHRHS-QNAFRFVVEGEGVWTVV--NGD--PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWID  174 (368)
T ss_dssp             SSSCEEEEEEECTTCEEEEEEES-SCEEEECSSCEEEEEEE--TTE--EEEEETTCEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             CCceEEEEEEECCCCccCceecc-cceEEEEEecceEEEEE--CCE--EEEEeCCCEEEECCCCcEEeEeCCCCCeEEEE
Confidence            34689999999999999999995 57999999999953333  455  78999999999999999999999999999999


Q ss_pred             EEeC
Q 042644          148 VLNS  151 (205)
Q Consensus       148 ~~~s  151 (205)
                      +++.
T Consensus       175 v~D~  178 (368)
T 3nw4_A          175 GLDI  178 (368)
T ss_dssp             EECH
T ss_pred             ecch
Confidence            8874

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=99.08  E-value=5.8e-10  Score=87.13  Aligned_cols=72  Identities=21%  Similarity=0.205  Sum_probs=59.1

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEe--cEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFK--GVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~--G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+++..+.+  ++..++|||+...|++||++  |++++.+   +++  .+.|++||+++||+|..|++.  +  ++++++
T Consensus        46 p~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G~g~v~i---dge--~~~l~~GD~v~IPpg~~H~i~--g--~l~~L~  114 (157)
T 4h7l_A           46 SVSVHYTQI--TKAARTHYHREHQEIYVVLDHAAHATIEL---NGQ--SYPLTKLLAISIPPLVRHRIV--G--EATIIN  114 (157)
T ss_dssp             SCEEEEEEE--CSCCCCBBCSSCEEEEEEEEECTTCEEEE---TTE--EEECCTTEEEEECTTCCEEEE--S--CEEEEE
T ss_pred             cEEEEEEeC--CCCccceECCCCcEEEEEEecCcEEEEEE---CCE--EEEeCCCCEEEECCCCeEeeE--C--CEEEEE
Confidence            456666555  45568999988889999999  9999987   465  689999999999999999997  2  688888


Q ss_pred             EEeCC
Q 042644          148 VLNSQ  152 (205)
Q Consensus       148 ~~~s~  152 (205)
                      ++...
T Consensus       115 I~~Pp  119 (157)
T 4h7l_A          115 IVSPP  119 (157)
T ss_dssp             EEESS
T ss_pred             EECCC
Confidence            87643

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.08  E-value=5.8e-10  Score=98.99  Aligned_cols=79  Identities=18%  Similarity=0.098  Sum_probs=69.5

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe-cCCccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN-VGYEFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N-~g~~~a~~l  146 (205)
                      +..+.+....+.||+..++|.|.. .|++||++|++.+..+  +++  ...+++||++++|.|..|...| .|+++++++
T Consensus       120 t~~L~a~~~~l~PG~~~~~HrH~~-~ev~~IleG~G~~t~v--~G~--~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l  194 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGAHRHAA-SALRFIMEGSGAYTIV--DGH--KVELGANDFVLTPNGTWHEHGILESGTECIWQ  194 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCCEEESS-CEEEEEEECSCEEEEE--TTE--EEEECTTCEEEECTTCCEEEEECTTCCCEEEE
T ss_pred             CCeeEEEEEEECCCCCcCCccCCc-ceEEEEEEeeEEEEEE--CCE--EEEEcCCCEEEECcCCCEEEEcCCCCCCEEEE
Confidence            457899999999999999999955 5999999999976444  465  6899999999999999999999 999999999


Q ss_pred             EEEeC
Q 042644          147 SVLNS  151 (205)
Q Consensus       147 ~~~~s  151 (205)
                      ++++.
T Consensus       195 ~v~d~  199 (394)
T 3bu7_A          195 DGLDI  199 (394)
T ss_dssp             EEECH
T ss_pred             Ecccc
Confidence            87763

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=99.08  E-value=5.1e-10  Score=85.11  Aligned_cols=72  Identities=15%  Similarity=0.084  Sum_probs=60.3

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      .+++..++++||   ..|||....|++||++|++++.+   +++  .+.|++||++++|+|..|.+.|  .++++++.++
T Consensus        56 ~~~~~~~~~~pG---~~~~h~~~~E~~~VLeG~~~l~~---~g~--~~~l~~GD~i~~p~g~~h~~~~--~~~~~~l~v~  125 (133)
T 2pyt_A           56 SMAAGFMQWDNA---FFPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGT--PTSVRFLYVA  125 (133)
T ss_dssp             SSEEEEEEEEEE---EEEEECSSEEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCEEEEEE--EEEEEEEEEE
T ss_pred             cEEEEEEEECCC---CccccCCCCEEEEEEECEEEEEE---CCE--EEEECCCcEEEECCCCEEEEEe--CCCEEEEEEE
Confidence            688889999999   35667668899999999999886   455  6799999999999999999987  4678887776


Q ss_pred             eC
Q 042644          150 NS  151 (205)
Q Consensus       150 ~s  151 (205)
                      ..
T Consensus       126 ~p  127 (133)
T 2pyt_A          126 WP  127 (133)
T ss_dssp             ES
T ss_pred             cC
Confidence            43

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.07  E-value=9.5e-10  Score=93.27  Aligned_cols=83  Identities=14%  Similarity=0.129  Sum_probs=71.6

Q ss_pred             CCCCccceEEEEEEEcCCcccCC-ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644           64 PGLNTLGLSVARTDLDVDGMVVP-HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus        64 P~l~~~gis~~~~~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~  142 (205)
                      |.-....+.+.+++++||+..+. |.| ...|.+||++|++.+.+   +++  +..|++||+++++.+..|+++|.|+++
T Consensus       184 p~~~~~~~~~~~~~l~pG~~i~~~~~h-~~e~~~~il~G~~~~~~---~~~--~~~v~~GD~~~~~~~~~h~~~n~g~~~  257 (278)
T 1sq4_A          184 MSDMRHDMHVNIVNFEPGGVIPFAETH-VMEHGLYVLEGKAVYRL---NQD--WVEVEAGDFMWLRAFCPQACYSGGPGR  257 (278)
T ss_dssp             TTCTTCSEEEEEEEECSSSEESCCCCC-SEEEEEEEEECEEEEEE---TTE--EEEEETTCEEEEEESCCEEEECCSSSC
T ss_pred             CCCcCCCeEEEEEEECCCCCcCCCCCC-CccEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEEcCCCCC
Confidence            43345679999999999999987 555 56799999999999876   565  799999999999999999999999999


Q ss_pred             EEEEEEEeCC
Q 042644          143 ATVFSVLNSQ  152 (205)
Q Consensus       143 a~~l~~~~s~  152 (205)
                      ++++.+.+-+
T Consensus       258 ~~yl~~~d~n  267 (278)
T 1sq4_A          258 FRYLLYKDVN  267 (278)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEEEEcC
Confidence            9999988743

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=99.07  E-value=8.7e-10  Score=81.00  Aligned_cols=77  Identities=14%  Similarity=0.071  Sum_probs=59.2

Q ss_pred             ccceEEEEEEEcCCcccCCc--cCCCCCeEEEEEecEEEEEEEeCCCeEEE--EEEcCCCEEEeCCCCeeEEEecCCc-c
Q 042644           68 TLGLSVARTDLDVDGMVVPH--THPRASEMLFVFKGVVIAGFVDTNRQVFQ--VMLKAGEVCVFPRGLLHFGFNVGYE-F  142 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH--~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~--~~l~~GDv~~vP~G~~H~~~N~g~~-~  142 (205)
                      +.++.+.++. .+|...+++  +|....|++||++|++++.+   +++  .  ..|++||.+++|+|..|.+.|.+++ +
T Consensus        28 ~~~~~i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~---~~~--~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~  101 (112)
T 2opk_A           28 RKGLKIERII-SNGQASPPGFWYDSPQDEWVMVVSGSAGIEC---EGD--TAPRVMRPGDWLHVPAHCRHRVAWTDGGEP  101 (112)
T ss_dssp             ETTEEEEEEE-ESSCCCCTTCCBCCSSEEEEEEEESCEEEEE---TTC--SSCEEECTTEEEEECTTCCEEEEEECSSSC
T ss_pred             CCCEEEEEEE-eCCccCCCCccccCCccEEEEEEeCeEEEEE---CCE--EEEEEECCCCEEEECCCCcEEEEeCCCCCC
Confidence            4467777775 455555552  34367899999999999987   344  4  7999999999999999999999876 6


Q ss_pred             EEEEEEEe
Q 042644          143 ATVFSVLN  150 (205)
Q Consensus       143 a~~l~~~~  150 (205)
                      +.+++++.
T Consensus       102 ~~~l~v~~  109 (112)
T 2opk_A          102 TVWLAVHC  109 (112)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            76777764

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.05  E-value=3.1e-09  Score=89.69  Aligned_cols=77  Identities=12%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             ccceEEEEEEEcCCcccCC-ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVP-HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      ...+.+.+++++||+..+. |.| ...|.+||++|++.+.+   +++  ++.+++||+++++++..|+++|.|++++++|
T Consensus       183 ~~d~~~~~~t~~PG~~~p~~e~H-~~eh~~~vL~G~g~y~l---~~~--~~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl  256 (266)
T 4e2q_A          183 AYDFNIHTMDFQPGEFLNVKEVH-YNQHGLLLLEGQGIYRL---GDN--WYPVQAGDVIWMAPFVPQWYAALGKTRSRYL  256 (266)
T ss_dssp             TCSEEEEEEEECTTCBCSSCCCC-SCCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             ccceEEEEEEECCCcCcCCceEc-ccceEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCcEEEEeCCCCCEEEE
Confidence            5578999999999999986 778 56799999999999876   455  7999999999999999999999999999998


Q ss_pred             EEEe
Q 042644          147 SVLN  150 (205)
Q Consensus       147 ~~~~  150 (205)
                      ..-+
T Consensus       257 ~ykd  260 (266)
T 4e2q_A          257 LYKD  260 (266)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            7654

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.05  E-value=1.1e-09  Score=90.04  Aligned_cols=73  Identities=19%  Similarity=0.230  Sum_probs=62.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      .+++..+.++||...++|+|+ ..|++||++|++.+.+   +++  .+.+++||.+++|+|..|++.|. .++++++.++
T Consensus       152 ~~~~~~~~~~~G~~~~~H~H~-~~e~~~Vl~G~~~~~i---~g~--~~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~ll~~  224 (227)
T 3rns_A          152 NLVMTIMSFWKGESLDPHKAP-GDALVTVLDGEGKYYV---DGK--PFIVKKGESAVLPANIPHAVEAE-TENFKMLLIL  224 (227)
T ss_dssp             TEEEEEEEECTTCEEEEECCS-SEEEEEEEEEEEEEEE---TTE--EEEEETTEEEEECTTSCEEEECC-SSCEEEEEEE
T ss_pred             CeEEEEEEECCCCccCCEECC-CcEEEEEEeEEEEEEE---CCE--EEEECCCCEEEECCCCcEEEEeC-CCCEEEEEEE
Confidence            578899999999999999996 5799999999999886   455  79999999999999999999983 4566665543

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=99.04  E-value=3.3e-09  Score=82.40  Aligned_cols=72  Identities=15%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      .+++..++++ ++.  .|||....|+.||++|++.+.+   +++  ...|++||+++||+|..|.+.|.  ++++++++.
T Consensus        65 ~~s~g~~~~e-~~~--~~~~~~~eE~~yVLeG~~~l~i---~g~--~~~l~~GD~i~iP~G~~h~~~n~--~~a~~l~V~  134 (151)
T 4axo_A           65 RLGCGMMEMK-ETT--FDWTLNYDEIDYVIDGTLDIII---DGR--KVSASSGELIFIPKGSKIQFSVP--DYARFIYVT  134 (151)
T ss_dssp             SCEEEEEEEE-EEE--EEEECSSEEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCEEEEEEE--EEEEEEEEE
T ss_pred             cEEEEEEEEc-Ccc--ccEeCCCcEEEEEEEeEEEEEE---CCE--EEEEcCCCEEEECCCCEEEEEeC--CCEEEEEEE
Confidence            5777777776 433  4677778899999999999986   455  78999999999999999999997  678888776


Q ss_pred             eC
Q 042644          150 NS  151 (205)
Q Consensus       150 ~s  151 (205)
                      ..
T Consensus       135 ~P  136 (151)
T 4axo_A          135 YP  136 (151)
T ss_dssp             EC
T ss_pred             CC
Confidence            54

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.02  E-value=9.5e-10  Score=92.77  Aligned_cols=78  Identities=13%  Similarity=0.094  Sum_probs=66.6

Q ss_pred             ccceEEEEEEEcCCcccCCccC-CCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTH-PRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~H-p~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      +..+.+.+++++||+....|.| +...|++||++|++++.+   +++  ...|++||.+++|++.+|.+.|.|+++++++
T Consensus        59 ~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~--~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l  133 (274)
T 1sef_A           59 GATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD---GQE--THELEAGGYAYFTPEMKMYLANAQEADTEVF  133 (274)
T ss_dssp             TCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC---SSC--EEEEETTEEEEECTTSCCEEEESSSSCEEEE
T ss_pred             CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEeCCCCCEEEE
Confidence            3467889999999997765554 456789999999999886   455  6899999999999999999999999999988


Q ss_pred             EEEe
Q 042644          147 SVLN  150 (205)
Q Consensus       147 ~~~~  150 (205)
                      .+..
T Consensus       134 ~v~~  137 (274)
T 1sef_A          134 LYKK  137 (274)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8764

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=99.00  E-value=5.6e-09  Score=84.05  Aligned_cols=83  Identities=13%  Similarity=0.227  Sum_probs=65.6

Q ss_pred             EEEEEEEcCCc----------ccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCc
Q 042644           72 SVARTDLDVDG----------MVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYE  141 (205)
Q Consensus        72 s~~~~~l~pgg----------~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~  141 (205)
                      +...+.+.|+.          ..+.|+|+. .|++||++|++.+.+.+.+++.+...+++||+++||+|..|++.+..+.
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~-~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~  153 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFEEHLHLD-EEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKN  153 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSS-CEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTC
T ss_pred             ceeEEEECCCcCcchhhhhccCCcceECCc-ceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCCC
Confidence            44556677765          348999975 7999999999999987654666678999999999999999999987777


Q ss_pred             cEEEEEEEeCCCCce
Q 042644          142 FATVFSVLNSQNPGV  156 (205)
Q Consensus       142 ~a~~l~~~~s~~pg~  156 (205)
                      .+.++-+|.. .|+.
T Consensus       154 ~~~airlF~~-~~~W  167 (191)
T 1vr3_A          154 YVKAMRLFVG-EPVW  167 (191)
T ss_dssp             CEEEEEEESS-SCCC
T ss_pred             CEEEEEEECC-CCCc
Confidence            7777777753 3444

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.99  E-value=1e-09  Score=92.68  Aligned_cols=88  Identities=13%  Similarity=0.047  Sum_probs=69.7

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~  131 (205)
                      +..++.+-..   .+ +..+.+.+++++||+..+.|.| ...|++||++|++++.+.+  ++  +++|++||.+++|++.
T Consensus        55 ~~~~~vL~sP---~~-G~~f~~~lv~l~PGg~s~~~~h-~~EEfiyVleG~l~l~l~~--g~--~~~L~~Gds~y~p~~~  125 (266)
T 4e2q_A           55 NTLGAYLITP---AT-GSHFVMYLAKMKEMSSSGLPPQ-DIERLIFVVEGAVTLTNTS--SS--SKKLTVDSYAYLPPNF  125 (266)
T ss_dssp             SEEEEEEECG---GG-TCSSEEEEEEECSSEECCCCCT-TEEEEEEEEEECEEEEC----CC--CEEECTTEEEEECTTC
T ss_pred             CEEEEEEcCC---CC-CCcEEEEEEEECcCCcCCCCCC-CCeEEEEEEEEEEEEEECC--Cc--EEEEcCCCEEEECCCC
Confidence            4455444433   33 3478999999999998888866 6889999999999998731  44  6899999999999999


Q ss_pred             eeEEEecCCccEEEEEEEe
Q 042644          132 LHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus       132 ~H~~~N~g~~~a~~l~~~~  150 (205)
                      .|++.|.  ++++++.+..
T Consensus       126 ~H~~~N~--~~Ar~l~V~k  142 (266)
T 4e2q_A          126 HHSLDCV--ESATLVVFER  142 (266)
T ss_dssp             CCEEEES--SCEEEEEEEE
T ss_pred             CEEEEeC--CCEEEEEEEe
Confidence            9999994  6888887754

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=98.98  E-value=3e-09  Score=86.91  Aligned_cols=78  Identities=18%  Similarity=0.082  Sum_probs=67.5

Q ss_pred             CccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           67 NTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        67 ~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      ....+.+..+.++||...|.|.|+ ..|++||++|++++.+.  +++  ...+++||++++|+|..|+++ .+++|+.++
T Consensus       128 ~s~~l~lG~v~l~PG~~yP~HsHp-~EEiy~VLsG~~e~~v~--~g~--~~~l~pGd~v~ipsgv~Ha~r-t~dePllal  201 (217)
T 4b29_A          128 LTQSLRVTVGYWGPGLDYGWHEHL-PEELYSVVSGRALFHLR--NAP--DLMLEPGQTRFHPANAPHAMT-TLTDPILTL  201 (217)
T ss_dssp             ECSSCEEEEEEECSSCEEEEEECS-SEEEEEEEEECEEEEET--TSC--CEEECTTCEEEECTTCCEEEE-CCSSCEEEE
T ss_pred             CCCeEEEEEEEECCCCcCCCCCCC-CceEEEEEeCCEEEEEC--CCC--EEecCCCCEEEcCCCCceeEE-ECCccEEEE
Confidence            344789999999999999999997 68999999999998873  244  689999999999999999998 588999877


Q ss_pred             EEEe
Q 042644          147 SVLN  150 (205)
Q Consensus       147 ~~~~  150 (205)
                      .+..
T Consensus       202 wvW~  205 (217)
T 4b29_A          202 VLWR  205 (217)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6654

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.92  E-value=7e-09  Score=85.11  Aligned_cols=73  Identities=7%  Similarity=0.004  Sum_probs=63.9

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      ++.+.++.++||...++|.|| ..|++||++|++++.+   +++  ...|++||++++|+|.+|.+.|.  ++++++.++
T Consensus        36 ~~~~~~~~~~~G~~~~~h~h~-~~~~~~Vl~G~~~~~i---~~~--~~~l~~Gd~~~~p~~~~H~~~a~--~~~~~l~i~  107 (227)
T 3rns_A           36 NSYISLFSLAKDEEITAEAML-GNRYYYCFNGNGEIFI---ENN--KKTISNGDFLEITANHNYSIEAR--DNLKLIEIG  107 (227)
T ss_dssp             SEEEEEEEECTTCEEEECSCS-SCEEEEEEESEEEEEE---SSC--EEEEETTEEEEECSSCCEEEEES--SSEEEEEEE
T ss_pred             CcEEEEEEECCCCccCccccC-CCEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEEC--CCcEEEEEE
Confidence            678899999999999999996 6799999999999987   344  68999999999999999999985  467777765


Q ss_pred             e
Q 042644          150 N  150 (205)
Q Consensus       150 ~  150 (205)
                      .
T Consensus       108 ~  108 (227)
T 3rns_A          108 E  108 (227)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.82  E-value=1.5e-08  Score=73.31  Aligned_cols=63  Identities=14%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEE
Q 042644           75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFAT  144 (205)
Q Consensus        75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~  144 (205)
                      ...+.||.. +.| | ...|++||++|++++.+.  +++  ...|++||++++|+|..|.+.|.++....
T Consensus        35 ~~~~~pg~~-~~h-H-~~~E~~~Vl~G~~~~~i~--~g~--~~~l~~GD~i~ip~g~~H~~~n~~~~~~~   97 (101)
T 1o5u_A           35 IWEKEVSEF-DWY-Y-DTNETCYILEGKVEVTTE--DGK--KYVIEKGDLVTFPKGLRCRWKVLEPVRKH   97 (101)
T ss_dssp             EEEECSEEE-EEE-C-SSCEEEEEEEEEEEEEET--TCC--EEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred             EEEeCCCcc-ccc-C-CceEEEEEEeCEEEEEEC--CCC--EEEECCCCEEEECCCCcEEEEeCCCeeEE
Confidence            566778764 355 6 578999999999998862  144  68999999999999999999997665443

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.79  E-value=3.1e-09  Score=84.79  Aligned_cols=70  Identities=20%  Similarity=0.249  Sum_probs=55.6

Q ss_pred             cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCce
Q 042644           84 VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGV  156 (205)
Q Consensus        84 ~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~  156 (205)
                      .++|+|+. .|++||++|++.+.+. .+++.+...+++||+++||+|..|++.+..+..+.++-+|... |+.
T Consensus        93 ~~~H~H~~-~Ei~~Vl~G~g~~~i~-~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~-~~w  162 (179)
T 1zrr_A           93 LNEHTHGE-DEVRFFVEGAGLFCLH-IGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP-EGW  162 (179)
T ss_dssp             HSCBEESS-CEEEEEEESCCCCCEE-CSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG-GGE
T ss_pred             ccceECCh-heEEEEEcceEEEEEE-eCCEEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC-CCc
Confidence            68999975 7999999999998775 3566566789999999999999999987655556666666543 543

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.76  E-value=3.8e-08  Score=81.72  Aligned_cols=72  Identities=14%  Similarity=0.105  Sum_probs=61.9

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ..+.+.+++++||+....|+   ..|++||++|++++.+   +++  .+.|++||.+++|++..|.+.|.  ++++++.+
T Consensus        48 ~~~~~~~~~l~Pg~~~~~~~---~ee~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~n~--~~~~~l~v  117 (246)
T 1sfn_A           48 ARFVQFTAEMPAGAQATESV---YQRFAFVLSGEVDVAV---GGE--TRTLREYDYVYLPAGEKHMLTAK--TDARVSVF  117 (246)
T ss_dssp             CSSEEEEEEECTTCEEECCS---SEEEEEEEEEEEEEEC---SSC--EEEECTTEEEEECTTCCCEEEEE--EEEEEEEE
T ss_pred             CcEEEEEEEECCCCcCCCCc---eeEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEeC--CCEEEEEE
Confidence            46788999999999887774   6799999999999886   455  68999999999999999999998  77877776


Q ss_pred             Ee
Q 042644          149 LN  150 (205)
Q Consensus       149 ~~  150 (205)
                      ..
T Consensus       118 ~~  119 (246)
T 1sfn_A          118 EK  119 (246)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.74  E-value=8.2e-08  Score=76.16  Aligned_cols=79  Identities=19%  Similarity=0.160  Sum_probs=62.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCC------CCeEEEEEecEEEEEEEeCCCeE------------------EEEEEcCCCEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPR------ASEMLFVFKGVVIAGFVDTNRQV------------------FQVMLKAGEVC  125 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~------a~Ei~yVl~G~~~v~~~~~~~~~------------------~~~~l~~GDv~  125 (205)
                      ....-++.+.||...|.|.|+.      -.|-++|+.|.+++.+  ++.+.                  ...+|++||.+
T Consensus        52 ~Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesv  129 (175)
T 2y0o_A           52 RYCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--EGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQY  129 (175)
T ss_dssp             SEEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--SSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEE
T ss_pred             CceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--CCccccCcceeccCCceeeecCCcEEEECCCCEE
Confidence            4788889999999999999999      8999999999988876  22221                  24699999999


Q ss_pred             EeCCCCeeEEEecCCccEEEEEEEeCC
Q 042644          126 VFPRGLLHFGFNVGYEFATVFSVLNSQ  152 (205)
Q Consensus       126 ~vP~G~~H~~~N~g~~~a~~l~~~~s~  152 (205)
                      .+|+|.+|++.| |.+. +++.-+++.
T Consensus       130 tIppg~~H~f~a-geeg-vli~EvSt~  154 (175)
T 2y0o_A          130 TIPPNTKHWFQA-GEEG-AVVTEMSST  154 (175)
T ss_dssp             EECTTCCEEEEE-EEEE-EEEEEEEEC
T ss_pred             EECCCCcEEEEe-CCCC-EEEEEEeCC
Confidence            999999999998 3344 444444443

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.71  E-value=4.1e-08  Score=73.58  Aligned_cols=67  Identities=12%  Similarity=-0.003  Sum_probs=54.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~  142 (205)
                      .+++...++.||... .|+|. ..|++||++|++++.+  ++++  ..+|++||++++|+|..|.+.|.+...
T Consensus        48 ~~~~g~w~~~pG~~~-~~~~~-~~E~~~Vl~G~~~l~~--~~g~--~~~l~~GD~~~ip~g~~h~~~~~~~~r  114 (123)
T 3bcw_A           48 KVESGVWESTSGSFQ-SNTTG-YIEYCHIIEGEARLVD--PDGT--VHAVKAGDAFIMPEGYTGRWEVDRHVK  114 (123)
T ss_dssp             TEEEEEEEEEEEEEE-CCCTT-EEEEEEEEEEEEEEEC--TTCC--EEEEETTCEEEECTTCCCEEEEEEEEE
T ss_pred             CEEEEEEEECCCcee-eEcCC-CcEEEEEEEEEEEEEE--CCCe--EEEECCCCEEEECCCCeEEEEECCcee
Confidence            578888899998754 46663 2899999999999875  2455  689999999999999999999986543

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=98.67  E-value=4.4e-07  Score=71.78  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=72.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEe-CCCe---EEEEEEcCCCEEEeCCCCeeEEEecCCccEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVD-TNRQ---VFQVMLKAGEVCVFPRGLLHFGFNVGYEFATV  145 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~-~~~~---~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~  145 (205)
                      ++++..+...||...++|-|.++..+++|++|+++..+.. ++++   ..+..+++||++++|++.+|.+.|.++++++.
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aVS  147 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTSERMVS  147 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSSSCEEE
T ss_pred             CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCCCCEEE
Confidence            6799999999999999999988889999999999886543 2232   23678999999999999999999999999999


Q ss_pred             EEEEeCCCC
Q 042644          146 FSVLNSQNP  154 (205)
Q Consensus       146 l~~~~s~~p  154 (205)
                      |-++..+..
T Consensus       148 lHvY~pp~~  156 (171)
T 3eqe_A          148 LHVYSPPLE  156 (171)
T ss_dssp             EEEEESCCC
T ss_pred             EEEeCCCcc
Confidence            888876654

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.66  E-value=1.3e-07  Score=82.52  Aligned_cols=77  Identities=16%  Similarity=0.220  Sum_probs=62.4

Q ss_pred             CccceEEEEEEEcC---CcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEEEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644           67 NTLGLSVARTDLDV---DGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLKAGEVCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus        67 ~~~gis~~~~~l~p---gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~  142 (205)
                      +...+++.++++.+   |+..+.|.| ...|++||++|++.+.+   ++ +  ...|++||++++|+|.+|.+.|.++. 
T Consensus       245 ~~~~f~~~~i~~~~~~~g~~~~~h~~-~~~~~~~vleG~~~i~i---~g~~--~~~l~~Gd~~~iPag~~h~~~~~~~~-  317 (350)
T 1juh_A          245 QDTNYTLSTISMSTTPSTVTVPTWSF-PGACAFQVQEGRVVVQI---GDYA--ATELGSGDVAFIPGGVEFKYYSEAYF-  317 (350)
T ss_dssp             GGGCEEEEEEEECCCCTTSCCCCBCC-SSCEEEEEEESCEEEEE---TTSC--CEEECTTCEEEECTTCCEEEEESSSS-
T ss_pred             ceeEEEEEEEeeccccCCCCCCcccC-CCcEEEEEEeeEEEEEE---CCeE--EEEeCCCCEEEECCCCCEEEEecCCe-
Confidence            43457888888888   447788888 56899999999999987   34 4  68999999999999999999997654 


Q ss_pred             EEEEEEEe
Q 042644          143 ATVFSVLN  150 (205)
Q Consensus       143 a~~l~~~~  150 (205)
                      +.++.+.+
T Consensus       318 ~~~l~~~~  325 (350)
T 1juh_A          318 SKVLFVSS  325 (350)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            66666654

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.65  E-value=3e-07  Score=80.83  Aligned_cols=89  Identities=15%  Similarity=0.108  Sum_probs=70.2

Q ss_pred             Cee-EEEeccCC-CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCC
Q 042644           52 YSS-LTLVTAAD-FPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR  129 (205)
Q Consensus        52 g~~-~~~~~~~~-~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~  129 (205)
                      |.. +..+|..+ -+.+.  -|++....|+||....+|.|. +.++++|++|++++.+   +++  ++..++||+|++|+
T Consensus       260 g~~~~~y~NP~tg~~~~p--ti~~~~~~L~pG~~t~~hRht-~s~Vy~V~eG~G~~~I---~~~--~~~w~~gD~fvvP~  331 (368)
T 3nw4_A          260 GHAAIRYVNPTTGGDVMP--TLRCEFHRLRAGTETATRNEV-GSTVFQVFEGAGAVVM---NGE--TTKLEKGDMFVVPS  331 (368)
T ss_dssp             TEEEEECBCTTTSSBSSS--SCEEEEEEECTTCBCCCEEES-SCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECT
T ss_pred             ceEEEEEeCCCCCCCcch--hHHhheEEECCCCccCCeecc-ccEEEEEEeCcEEEEE---CCE--EEEecCCCEEEECC
Confidence            445 66666443 23344  467777789999999999995 6699999999999887   455  78999999999999


Q ss_pred             CCeeEEEecCCccEEEEEEEe
Q 042644          130 GLLHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus       130 G~~H~~~N~g~~~a~~l~~~~  150 (205)
                      +..|...|.  +++.++.+-+
T Consensus       332 w~~h~~~n~--~~a~Lf~~~D  350 (368)
T 3nw4_A          332 WVPWSLQAE--TQFDLFRFSD  350 (368)
T ss_dssp             TCCEEEEES--SSEEEEEEES
T ss_pred             CCcEEEEeC--CCEEEEEEeC
Confidence            999999996  6777766543

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=98.63  E-value=1.1e-07  Score=74.33  Aligned_cols=74  Identities=12%  Similarity=0.108  Sum_probs=62.4

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec--CCccEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV--GYEFATVFS  147 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~--g~~~a~~l~  147 (205)
                      +..+.++.++||+..++|+|+. .|.+|||+|++.+   +.++    ..+++||.++.|+|..|...+.  ++++++++.
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~---~e~~----~~~~~Gd~~~~P~g~~H~~~~~~~~~e~~~~~~  112 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTG-TVIVYTVQGSWRY---KEHD----WVAHAGSVVYETASTRHTPQSAYAEGPDIITFN  112 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESS-CEEEEEEESCEEE---TTSS----CCBCTTCEEEECSSEEECEEESSSSSSCEEEEE
T ss_pred             CeEEEEEEECCCCCcccccCCC-CEEEEEEEeEEEE---eCCC----eEECCCeEEEECCCCcceeEeCCCCCCCEEEEE
Confidence            5788889999999999999965 7889999999874   2222    4799999999999999999998  778898887


Q ss_pred             EEeC
Q 042644          148 VLNS  151 (205)
Q Consensus       148 ~~~s  151 (205)
                      +.+-
T Consensus       113 ~~~G  116 (159)
T 3ebr_A          113 IVAG  116 (159)
T ss_dssp             EEES
T ss_pred             EecC
Confidence            6653

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=98.59  E-value=4.4e-08  Score=75.21  Aligned_cols=77  Identities=13%  Similarity=-0.073  Sum_probs=58.7

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEEeCCCCeeE-EEecCCccEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCVFPRGLLHF-GFNVGYEFATVFS  147 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~vP~G~~H~-~~N~g~~~a~~l~  147 (205)
                      +-.+.++.++||+..++|+|+. .|.+||++|++...    .+.. ....+++||.+++|+|..|. ..+  .+.++++.
T Consensus        43 g~~~~~~~~~pG~~~p~H~H~~-~ee~~VL~G~~~~~----~g~~~~~~~~~~Gd~~~~p~g~~H~p~~~--~e~~~~l~  115 (145)
T 2o1q_A           43 GSWTAIFDCPAGSSFAAHVHVG-PGEYFLTKGKMDVR----GGKAAGGDTAIAPGYGYESANARHDKTEF--PVASEFYM  115 (145)
T ss_dssp             TEEEEEEEECTTEEECCEEESS-CEEEEEEEEEEEET----TCGGGTSEEEESSEEEEECTTCEESCCEE--EEEEEEEE
T ss_pred             ccEEEEEEECCCCCCCccCCCC-CEEEEEEEeEEEEc----CCCEecceEeCCCEEEEECcCCccCCeEC--CCCeEEEE
Confidence            3467789999999999999975 56699999999843    2321 12789999999999999999 433  45567777


Q ss_pred             EEeCCC
Q 042644          148 VLNSQN  153 (205)
Q Consensus       148 ~~~s~~  153 (205)
                      +++...
T Consensus       116 ~~~gp~  121 (145)
T 2o1q_A          116 SFLGPL  121 (145)
T ss_dssp             EEESCE
T ss_pred             EECCcc
Confidence            776543

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.58  E-value=2.1e-07  Score=80.35  Aligned_cols=77  Identities=22%  Similarity=0.163  Sum_probs=63.4

Q ss_pred             EEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC-CeEEEEEEcC-C---CEEEeCCCCeeEEEecCCccEEEE
Q 042644           72 SVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKA-G---EVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        72 s~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~l~~-G---Dv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      .....++.||.....|||.+..|.++|++|++.+.+-++. ++  ...+.. |   +.+++|+|..|.+.|.|+++++++
T Consensus       273 q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~  350 (369)
T 3st7_A          273 QVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDE--IIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTI  350 (369)
T ss_dssp             EEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCC--CEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEE
T ss_pred             eEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCc--EEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEE
Confidence            4455678999999999999999999999999998776544 34  445555 6   999999999999999998999877


Q ss_pred             EEEe
Q 042644          147 SVLN  150 (205)
Q Consensus       147 ~~~~  150 (205)
                      ..-+
T Consensus       351 ~~~~  354 (369)
T 3st7_A          351 MWVN  354 (369)
T ss_dssp             EEES
T ss_pred             EecC
Confidence            6543

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.56  E-value=5.5e-07  Score=70.97  Aligned_cols=68  Identities=13%  Similarity=0.127  Sum_probs=54.9

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG  139 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g  139 (205)
                      ..+.++ ..-.|++....|.| ...|++||++|++.+.+.+ +++.....|++||++++|+|+.|+-...+
T Consensus        34 ~~~~V~-~v~Gpn~r~d~H~h-~~dE~FyvlkG~m~i~v~d-~g~~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           34 SDFIVT-VVGGPNHRTDYHDD-PLEEFFYQLRGNAYLNLWV-DGRRERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             CSEEEE-EECSCBCCCCEEEC-SSCEEEEEEESCEEEEEEE-TTEEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             CcEEEE-EEcCCCcCccCcCC-CCceEEEEEeeEEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCccccC
Confidence            344443 33567778999988 6789999999999999987 45455799999999999999999997654

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=98.51  E-value=1.7e-06  Score=70.42  Aligned_cols=82  Identities=13%  Similarity=0.082  Sum_probs=69.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEe--CCCeE----EEEEEcCCCEEEeCC--CCeeEEEec-CC
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVD--TNRQV----FQVMLKAGEVCVFPR--GLLHFGFNV-GY  140 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~--~~~~~----~~~~l~~GDv~~vP~--G~~H~~~N~-g~  140 (205)
                      .+.+..+...||...++|-|.. ..+++|++|++...+..  .+++.    .+.++++||+++++.  |.+|.+.|. ++
T Consensus        78 ~~~v~~l~w~PGq~spiHdH~~-~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~  156 (208)
T 2gm6_A           78 RFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  156 (208)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEeCCCcccCcccCCc-ceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCC
Confidence            6889999999999999999976 89999999999877643  23322    258999999999999  999999999 68


Q ss_pred             ccEEEEEEEeCC
Q 042644          141 EFATVFSVLNSQ  152 (205)
Q Consensus       141 ~~a~~l~~~~s~  152 (205)
                      ++++.|-++...
T Consensus       157 ~~avsLHvY~~~  168 (208)
T 2gm6_A          157 RVSISIHVYGAN  168 (208)
T ss_dssp             SCEEEEEEESSC
T ss_pred             CcEEEEEEEcCC
Confidence            899988888543

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=98.49  E-value=4.5e-07  Score=71.27  Aligned_cols=74  Identities=19%  Similarity=0.134  Sum_probs=59.8

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC--CccEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG--YEFATVFS  147 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g--~~~a~~l~  147 (205)
                      +..+.++.++||+..++|+|+ ..|.+|||+|++...    ++.  ...+++||.+..|+|..|...+..  +++++++.
T Consensus        42 g~~v~lvr~~pG~~~p~H~H~-g~ee~~VL~G~f~~~----~~~--~~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l~  114 (165)
T 3cjx_A           42 GLMVMRASFAPGLTLPLHFHT-GTVHMYTISGCWYYT----EYP--GQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIF  114 (165)
T ss_dssp             TEEEEEEEECTTCBCCEEEES-SCEEEEEEESEEEET----TCT--TSCEETTEEEEECTTCEECEECCTTCSSCEEEEE
T ss_pred             CcEEEEEEECCCCcCCcccCC-CCEEEEEEEEEEEEC----CCc--eEEECCCeEEEeCCCCceeeEeCCCCCCCcEEEE
Confidence            567889999999999999996 579999999999752    221  257899999999999999998854  33786666


Q ss_pred             EEe
Q 042644          148 VLN  150 (205)
Q Consensus       148 ~~~  150 (205)
                      +.+
T Consensus       115 v~~  117 (165)
T 3cjx_A          115 MLS  117 (165)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            655

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=98.46  E-value=3.7e-07  Score=69.52  Aligned_cols=68  Identities=13%  Similarity=0.238  Sum_probs=53.3

Q ss_pred             CCcccCCccCCCCCeEEEEEecEEEEEEEeCC-C--eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           80 VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-R--QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        80 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~-~--~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      ++++..+|.|++..|+|+|++|++++.+-+.. +  +.....+++|++++||+|+.|.....  +.+.++.+=
T Consensus        38 ~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~--~e~~vLLiE  108 (140)
T 3d0j_A           38 IEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQ--KDTKMMYVQ  108 (140)
T ss_dssp             TTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEEC--TTCEEEEEE
T ss_pred             cccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCC--CceEEEEEE
Confidence            45678899999999999999999999887421 1  12368999999999999999999864  445555443

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.41  E-value=2.7e-06  Score=64.59  Aligned_cols=58  Identities=14%  Similarity=0.131  Sum_probs=47.8

Q ss_pred             CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC-ccEEEEEE
Q 042644           85 VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY-EFATVFSV  148 (205)
Q Consensus        85 ~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~-~~a~~l~~  148 (205)
                      .||.| +.-|++||++|++.+.+   +++  .+.+++||++++|+|.+|...+.++ ++...+.+
T Consensus        32 ~p~~h-~~~~i~~v~~G~~~~~i---~~~--~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i   90 (164)
T 2arc_A           32 RPLGM-KGYILNLTIRGQGVVKN---QGR--EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWV   90 (164)
T ss_dssp             ETTCC-SSEEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEE
T ss_pred             cccCC-CceEEEEEEEeEEEEEE---CCE--EEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEE
Confidence            58999 67799999999999886   455  7899999999999999999988763 55555443

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=98.33  E-value=1.3e-05  Score=64.83  Aligned_cols=86  Identities=14%  Similarity=0.053  Sum_probs=71.8

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeC--CC-----eEEEEEEcCCCEEEe-CCCCeeEEEecC-C
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT--NR-----QVFQVMLKAGEVCVF-PRGLLHFGFNVG-Y  140 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~--~~-----~~~~~~l~~GDv~~v-P~G~~H~~~N~g-~  140 (205)
                      .+++..+...||...++|-|.++..+++|++|+++..+.+-  ++     ...+.++++||+.++ |.+.+|.+.|.+ +
T Consensus        69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~  148 (200)
T 3eln_A           69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  148 (200)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             ceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCC
Confidence            58888999999999999999878999999999999876541  11     123689999999999 888899999998 7


Q ss_pred             ccEEEEEEEeCCCCc
Q 042644          141 EFATVFSVLNSQNPG  155 (205)
Q Consensus       141 ~~a~~l~~~~s~~pg  155 (205)
                      ++++-|=++.....+
T Consensus       149 ~~avSlHvY~pp~~~  163 (200)
T 3eln_A          149 EPAVSLHLYSPPFDT  163 (200)
T ss_dssp             CCEEEEEEEESCCSE
T ss_pred             CCEEEEEeCCCCccc
Confidence            899888888766544

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.29  E-value=5.3e-06  Score=65.32  Aligned_cols=59  Identities=15%  Similarity=0.289  Sum_probs=49.5

Q ss_pred             EcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC----eEEEEEEcCCCEEEeCCCCeeEEEec
Q 042644           78 LDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR----QVFQVMLKAGEVCVFPRGLLHFGFNV  138 (205)
Q Consensus        78 l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~----~~~~~~l~~GDv~~vP~G~~H~~~N~  138 (205)
                      -.|+...-.|.| ...|++|+++|+..+.+.+. +    +.....+++||++++|+|+.|+-+..
T Consensus        41 gGPn~r~D~H~~-~~eE~Fy~lkG~m~l~v~d~-g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~  103 (176)
T 1zvf_A           41 GGPNERTDYHIN-PTPEWFYQKKGSMLLKVVDE-TDAEPKFIDIIINEGDSYLLPGNVPHSPVRF  103 (176)
T ss_dssp             CSSBCCSCEEEC-SSCEEEEEEESCEEEEEEEC-SSSSCEEEEEEECTTEEEEECTTCCEEEEEC
T ss_pred             cCCCcCCcCcCC-CCceEEEEEeCEEEEEEEcC-CCcccceeeEEECCCCEEEcCCCCCcCCccc
Confidence            345567889955 67899999999999999873 4    45579999999999999999998654

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.20  E-value=5.2e-06  Score=68.17  Aligned_cols=83  Identities=20%  Similarity=0.173  Sum_probs=63.3

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~  131 (205)
                      |.+...+....  .  ..+..+..+.++||+..++|+|+ ..|.+|||+|++.    +.     ...+.+||.+..|+|.
T Consensus        28 Gv~~~~L~~~~--~--e~g~~~~lvr~~pG~~~p~H~H~-g~Ee~~VL~G~f~----d~-----~~~~~~Gd~~~~P~g~   93 (223)
T 3o14_A           28 GVERRMLDRIG--G--EVARATSIVRYAPGSRFSAHTHD-GGEEFIVLDGVFQ----DE-----HGDYPAGTYVRNPPTT   93 (223)
T ss_dssp             TEEEEEEEEES--S--SSCEEEEEEEECTTEECCCEECT-TCEEEEEEEEEEE----ET-----TEEEETTEEEEECTTC
T ss_pred             CEEEEEeecCC--C--ccccEEEEEEECCCCCcccccCC-CCEEEEEEEeEEE----EC-----CeEECCCeEEEeCCCC
Confidence            55555553221  1  12456778899999999999995 5799999999975    32     3689999999999999


Q ss_pred             eeEEEecCCccEEEEEEEe
Q 042644          132 LHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus       132 ~H~~~N~g~~~a~~l~~~~  150 (205)
                      .|....  .+.+.+++.+.
T Consensus        94 ~H~p~a--~~gc~~~vk~~  110 (223)
T 3o14_A           94 SHVPGS--AEGCTIFVKLW  110 (223)
T ss_dssp             EECCEE--SSCEEEEEEES
T ss_pred             ccccEe--CCCCEEEEEec
Confidence            999875  56688887764

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=98.17  E-value=1.1e-05  Score=67.99  Aligned_cols=59  Identities=14%  Similarity=0.273  Sum_probs=50.3

Q ss_pred             cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC
Q 042644           79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG  139 (205)
Q Consensus        79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g  139 (205)
                      .|+...-.| |....|+||+++|...+.+.+ +++.....+++||++++|+|+.|.-....
T Consensus        39 GpN~R~d~H-~~~~dE~FyqlkG~m~l~~~d-~g~~~~V~i~eGemfllP~gv~HsP~r~~   97 (286)
T 2qnk_A           39 GPNTRKDYH-IEEGEEVFYQLEGDMVLRVLE-QGKHRDVVIRQGEIFLLPARVPHSPQRFA   97 (286)
T ss_dssp             SCBCCCCEE-ECSSCEEEEEEESCEEEEEEE-TTEEEEEEECTTEEEEECTTCCEEEEECT
T ss_pred             CCCcCccCc-CCCCCeEEEEEeCeEEEEEEe-CCceeeEEECCCeEEEeCCCCCcCCcccC
Confidence            344457889 888899999999999999987 46666799999999999999999997643

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=98.12  E-value=5e-05  Score=58.08  Aligned_cols=94  Identities=12%  Similarity=0.086  Sum_probs=66.3

Q ss_pred             CeeEEEecc-CCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCC-EEEeCC
Q 042644           52 YSSLTLVTA-ADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGE-VCVFPR  129 (205)
Q Consensus        52 g~~~~~~~~-~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GD-v~~vP~  129 (205)
                      .|.++.+.. .+.|- .-.. .+.....+||....+|.|....|++++++|+..+.+.+ +....+..|.+.+ .+.||+
T Consensus        17 RG~L~~~e~~~~ipf-~ikR-vy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldD-g~~~~~~~L~~~~~gL~Ipp   93 (141)
T 2pa7_A           17 RGSLVAIEENKNIPF-SIKR-VYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDD-GNIIQEITLDSPAVGLYVGP   93 (141)
T ss_dssp             TEEEEEEETTTTSSS-CCCE-EEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEEC-SSCEEEEEECCTTEEEEECT
T ss_pred             CCcEEEEeccCCCCC-CccE-EEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEEC-CcEEEEEEECCCCcEEEeCC
Confidence            567777765 33333 2111 22223456888999999999999999999999998854 3334567776655 589999


Q ss_pred             CCeeEEEecCCccEEEEEEE
Q 042644          130 GLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus       130 G~~H~~~N~g~~~a~~l~~~  149 (205)
                      |.+|.+.+.+.. ++++.+-
T Consensus        94 gvWh~~~~~s~~-avllvla  112 (141)
T 2pa7_A           94 AVWHEMHDFSSD-CVMMVLA  112 (141)
T ss_dssp             TCEEEEECCCTT-CEEEEEE
T ss_pred             CEEEEEEEcCCC-eEEEEEC
Confidence            999999998775 5555443

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=98.08  E-value=6.5e-05  Score=59.39  Aligned_cols=98  Identities=13%  Similarity=0.038  Sum_probs=69.7

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC------CeEEEEEEc---CC
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN------RQVFQVMLK---AG  122 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~---~G  122 (205)
                      .|.+.+....+...+... .........+|.+...|+|....++++|++|++...++|-.      ++.....|.   ..
T Consensus        35 RG~f~e~~~~~~~~~~~f-~Q~n~s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~  113 (174)
T 3ejk_A           35 GGPVLHMLRLDSPQFSQF-GEIYFSEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNY  113 (174)
T ss_dssp             TSCEECCCCTTCTTCCCC-CEEEEEEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBC
T ss_pred             CcCEEEEEecCccCCCCe-eEEEEEECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCc
Confidence            446666554333222111 11222334788899999998889999999999999888743      455778887   56


Q ss_pred             CEEEeCCCCeeEEEecCCccEEEEEEEe
Q 042644          123 EVCVFPRGLLHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus       123 Dv~~vP~G~~H~~~N~g~~~a~~l~~~~  150 (205)
                      ..++||+|.+|.+.+.++++++++...+
T Consensus       114 ~~L~IP~G~aHgf~~lsd~~av~ly~~s  141 (174)
T 3ejk_A          114 RLLRIPPQVWYGFAATGDTPALVANCTD  141 (174)
T ss_dssp             EEEEECTTCEEEEEECTTSCEEEEEEES
T ss_pred             eEEEeCCCcEEEEEEccCCCEEEEEECC
Confidence            7999999999999999887777665544

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=97.99  E-value=0.00025  Score=55.71  Aligned_cols=131  Identities=14%  Similarity=0.039  Sum_probs=89.7

Q ss_pred             CCCCeeEEEeccCCCC-CCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEE-EEEEEeCCCeEEEEE----EcCC
Q 042644           49 KFPYSSLTLVTAADFP-GLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVV-IAGFVDTNRQVFQVM----LKAG  122 (205)
Q Consensus        49 ~~~g~~~~~~~~~~~P-~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~-~v~~~~~~~~~~~~~----l~~G  122 (205)
                      +- ||+..+.....-+ .-.....+....-|.+|....+|.. ++.|+.|...|.. ++.++.++++....+    +.+|
T Consensus        27 PE-GG~yret~rs~~~~~~~R~~~T~IYfLL~~g~~S~~HRv-~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~G  104 (170)
T 1yud_A           27 VE-GGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRL-TADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAG  104 (170)
T ss_dssp             TT-SSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEEC-SSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTT
T ss_pred             CC-CceEEEeecCCCCCCCCCccceEEEEEECCCCCCeeEEc-CCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccC
Confidence            44 8888887765411 1122346778888999998889998 6999999999995 888888888765555    4678


Q ss_pred             CE--EEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHHHHhh
Q 042644          123 EV--CVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSE  189 (205)
Q Consensus       123 Dv--~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~l~  189 (205)
                      +.  ++||+|.++..++.+.+-+.+-++.   .||+..-...+     .+.+.|.+.|---++.++++-
T Consensus       105 e~pQ~vVP~G~wqaa~~~~g~~~LV~C~V---aPGF~f~dfel-----~~~~~L~~~~P~~~~~I~~lt  165 (170)
T 1yud_A          105 ERPQFLVPKGCIFGSAMNQDGFSLVGCMV---SPGFTFDDFEL-----FSQEALLAMYPQHKAVVQKLS  165 (170)
T ss_dssp             EESCEEECTTCEEEEEESSSSEEEEEEEE---SSCCCGGGCCB-----CBHHHHHHSCCTTHHHHTTSC
T ss_pred             ceeEEEECCCCEEEEEECCCCcEEEEEEE---CCCccCCceEE-----cCHHHHHhHCchhHHHHHHhh
Confidence            98  9999999999998732433333332   35543221112     246667777777777777765

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=97.98  E-value=1.1e-05  Score=62.54  Aligned_cols=88  Identities=14%  Similarity=0.003  Sum_probs=62.3

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEEeCCC
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCVFPRG  130 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~vP~G  130 (205)
                      |.++..+...  |   ..|-...++.++||+.+++|+|+ ..|.+|||+|++....    +.. ....+++|+.++.|+|
T Consensus        32 Gv~~k~L~~~--~---e~g~~t~lvr~~pG~~~p~H~H~-g~ee~~VL~G~~~~~~----Gd~~~~~~~~aGsYv~ePpG  101 (153)
T 3bal_A           32 GITWQLLHSS--P---ETSSWTAIFNCPAGSSFASHIHA-GPGEYFLTKGKMEVRG----GEQEGGSTAYAPSYGFESSG  101 (153)
T ss_dssp             CCEEEEEEEE--T---TTTEEEEEEEECTTEEECCEEES-SCEEEEEEESEEEETT----CGGGTSEEEESSEEEEECTT
T ss_pred             CeEEEEEEEC--C---ccceEEEEEEeCCCCCccCccCC-CCEEEEEEEEEEEecC----ccccCccccCCCeEEEcCCC
Confidence            5566555221  2   24788889999999999999997 4688999999997542    210 1367899999999999


Q ss_pred             CeeEEEecCCccEEEEEEEe
Q 042644          131 LLHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus       131 ~~H~~~N~g~~~a~~l~~~~  150 (205)
                      ..|..... ++..+++....
T Consensus       102 s~H~p~~~-~~~~~~~~~~~  120 (153)
T 3bal_A          102 ALHGKTFF-PVESQFYMTFL  120 (153)
T ss_dssp             CEESCCEE-SSCEEEEEEEE
T ss_pred             CcccceeC-CCCeEEEEEEE
Confidence            99985432 33344444443

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=97.92  E-value=0.00026  Score=57.60  Aligned_cols=83  Identities=14%  Similarity=0.067  Sum_probs=67.7

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEe--CCCeEE----EEEEcCCCEEEeCCC--CeeEEEecC-C
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVD--TNRQVF----QVMLKAGEVCVFPRG--LLHFGFNVG-Y  140 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~--~~~~~~----~~~l~~GDv~~vP~G--~~H~~~N~g-~  140 (205)
                      .+++..+...||...++|=|. +.-++.|++|+++..+..  ++++..    ..++.+||+++++++  .+|.+.|.+ +
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d  150 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSD  150 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCC
Confidence            588999999999999999997 899999999999876543  233321    378999999999877  899999984 7


Q ss_pred             ccEEEEEEEeCCC
Q 042644          141 EFATVFSVLNSQN  153 (205)
Q Consensus       141 ~~a~~l~~~~s~~  153 (205)
                      ++++-|=++....
T Consensus       151 ~~avSLHvYg~pl  163 (211)
T 3uss_A          151 RTSISIHVYGANI  163 (211)
T ss_dssp             SCEEEEEEESSCG
T ss_pred             CCEEEEEEcCCCC
Confidence            8888877776543

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.81  E-value=0.00017  Score=59.67  Aligned_cols=73  Identities=22%  Similarity=0.234  Sum_probs=54.5

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .++++..+.+ .|...... +| .+|++||++|++++..   +++  ..++++||+++||+|..|.+...+.-. .+++.
T Consensus        45 ~~~~~G~~~~-~g~~~v~~-~p-~dE~~~VleG~~~lt~---~g~--~~~~~~Gd~~~ip~G~~~~w~~~~~~~-~~y~~  115 (238)
T 3myx_A           45 QGIAAGIVEF-GTALSVEA-YP-YTEMLVMHRGSVTLTS---GTD--SVTLSTGESAVIGRGTQVRIDAQPESL-WAFCA  115 (238)
T ss_dssp             TSEEEEEEEE-CSEEEESS-CS-SEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEECTTEE-EEEEE
T ss_pred             CCeEEEEEEe-cccccccc-CC-CcEEEEEEEeEEEEEC---CCe--EEEEcCCCEEEECCCCEEEEEecCCeE-EEEEe
Confidence            3788888888 55544322 21 3799999999999875   455  689999999999999999998765443 34455


Q ss_pred             Ee
Q 042644          149 LN  150 (205)
Q Consensus       149 ~~  150 (205)
                      +.
T Consensus       116 ~~  117 (238)
T 3myx_A          116 ST  117 (238)
T ss_dssp             EC
T ss_pred             cc
Confidence            66

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.80  E-value=0.00015  Score=53.64  Aligned_cols=63  Identities=14%  Similarity=0.094  Sum_probs=48.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV  138 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~  138 (205)
                      .+.+......||...-. ++ ...|++|||+|++++..  .+|+  ..++++||++++|+|..-.+.-.
T Consensus        41 ~~~~GvWe~tPG~~~~~-~~-~~~E~~~iLeG~~~lt~--ddG~--~~~l~aGD~~~~P~G~~gtWev~  103 (116)
T 3es4_A           41 GTIVAVWMAEPGIYNYA-GR-DLEETFVVVEGEALYSQ--ADAD--PVKIGPGSIVSIAKGVPSRLEIL  103 (116)
T ss_dssp             CCEEEEEEECSEEEEEC-CC-SEEEEEEEEECCEEEEE--TTCC--CEEECTTEEEEECTTCCEEEEEC
T ss_pred             CEEEEEEecCCceeECe-eC-CCcEEEEEEEeEEEEEe--CCCe--EEEECCCCEEEECCCCeEEEEEe
Confidence            35666678999976532 23 23499999999999875  3455  68999999999999999888654

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=97.61  E-value=0.00033  Score=57.82  Aligned_cols=73  Identities=7%  Similarity=0.017  Sum_probs=53.2

Q ss_pred             ceEEEEEEEcCCc--ccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec--CCccEEE
Q 042644           70 GLSVARTDLDVDG--MVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV--GYEFATV  145 (205)
Q Consensus        70 gis~~~~~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~--g~~~a~~  145 (205)
                      ++-+....+....  ..++||| +.-|++||++|++. .+ + +.....+.+++||++++|+|.+|.+...  ++++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~G~~~-~i-~-~~~~~~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~   81 (276)
T 3gbg_A            6 SFQTNVYRMSKFDTYIFNNLYI-NDYKMFWIDSGIAK-LI-D-KNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINV   81 (276)
T ss_dssp             TEEEEEEEECTTCEEEEEEEEC-SSCEEEEESSSCEE-EE-E-TTTTEEEEECTTEEEEECTTCEEEEEEEECCSSCEEE
T ss_pred             hhhhhhhhhhcccchhccHhhh-cceEEEEEecCceE-EE-C-CccceeEEEcCCCEEEEcCCCceeeccccCCCcceEE
Confidence            4555666666655  4588999 77899999999999 65 3 2200148899999999999999998765  3344443


Q ss_pred             E
Q 042644          146 F  146 (205)
Q Consensus       146 l  146 (205)
                      +
T Consensus        82 ~   82 (276)
T 3gbg_A           82 S   82 (276)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.54  E-value=0.00063  Score=56.27  Aligned_cols=63  Identities=13%  Similarity=0.172  Sum_probs=50.9

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV  138 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~  138 (205)
                      .++.......||...+.++  +..|++|||+|++++..  .+|+  ..++++||+++||+|..-.+.-.
T Consensus       166 ~~~~GiW~~tpG~~~~~~~--~~~E~~~ILeG~v~lt~--~~G~--~~~~~aGD~~~~P~G~~~tWev~  228 (238)
T 3myx_A          166 TLRIGVWDSTPYERISRPH--KIHELMNLIEGRVVLSL--ENGS--SLTVNTGDTVFVAQGAPCKWTST  228 (238)
T ss_dssp             SCEEEEEEECCEEBCCEEC--SSCEEEEEEECCEEEEE--TTSC--EEEECTTCEEEECTTCEEEEEES
T ss_pred             CEEEeEEEeCCCEEECCcC--CCCEEEEEEEeEEEEEe--CCCC--EEEECCCCEEEECCCCEEEEEEC
Confidence            5788889999988554433  46799999999999864  3565  68999999999999998888754

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=97.34  E-value=0.0026  Score=50.62  Aligned_cols=70  Identities=17%  Similarity=0.095  Sum_probs=55.4

Q ss_pred             cCCcccCCccC--CCCCeEEEEEecEEEEEEEeCC------CeEEEEEEcC--CCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           79 DVDGMVVPHTH--PRASEMLFVFKGVVIAGFVDTN------RQVFQVMLKA--GEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        79 ~pgg~~~pH~H--p~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~--GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .+|.+...|+|  ....++++|++|++..-++|-.      ++.....|.+  +..++||+|.+|.+.+.++. ++++..
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  134 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNYK  134 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEEe
Confidence            37889999999  7778999999999866566643      3667788865  58999999999999999876 555544


Q ss_pred             E
Q 042644          149 L  149 (205)
Q Consensus       149 ~  149 (205)
                      .
T Consensus       135 ~  135 (185)
T 1ep0_A          135 C  135 (185)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=97.27  E-value=0.0032  Score=50.03  Aligned_cols=71  Identities=17%  Similarity=0.022  Sum_probs=55.5

Q ss_pred             cCCcccCCccC--CCCCeEEEEEecEEEEEEEeCC------CeEEEEEEcC--CCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           79 DVDGMVVPHTH--PRASEMLFVFKGVVIAGFVDTN------RQVFQVMLKA--GEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        79 ~pgg~~~pH~H--p~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~--GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .+|.+...|+|  .....+++|++|++..-++|-.      ++.....|.+  +..++||+|.+|.+.+.++. ++++..
T Consensus        57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  135 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEY-AEFLYK  135 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             CCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCC-EEEEEe
Confidence            37889999999  6778999999999865556532      4667788865  58999999999999999876 555544


Q ss_pred             Ee
Q 042644          149 LN  150 (205)
Q Consensus       149 ~~  150 (205)
                      .+
T Consensus       136 ~s  137 (184)
T 2ixk_A          136 TT  137 (184)
T ss_dssp             ES
T ss_pred             CC
Confidence            33

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=97.18  E-value=0.0026  Score=51.43  Aligned_cols=68  Identities=18%  Similarity=0.210  Sum_probs=54.1

Q ss_pred             cCCcccCCccCC---CCCeEEEEEecEEEEEEEeCC------CeEEEEEEcC--CCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           79 DVDGMVVPHTHP---RASEMLFVFKGVVIAGFVDTN------RQVFQVMLKA--GEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        79 ~pgg~~~pH~Hp---~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~--GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+|.++..|+|.   ...++++|++|++..-++|-.      ++.....|.+  +..++||+|.+|.+.+.++. +.++.
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~-a~~~Y  156 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH-TIVMY  156 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS-EEEEE
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC-EEEEE
Confidence            678899999994   367999999999876666632      5667788875  78999999999999999865 54443

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=97.18  E-value=0.0019  Score=53.84  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=55.9

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCC--CCeeEEEecCC-ccEEEEEE
Q 042644           73 VARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR--GLLHFGFNVGY-EFATVFSV  148 (205)
Q Consensus        73 ~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~--G~~H~~~N~g~-~~a~~l~~  148 (205)
                      +....+.||.-+++|-|.+-..+.||++|+++-.  |+.|.  ..++++||+-+..+  |+.|.-+|..+ ++++++-.
T Consensus        66 ln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn--~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQl  140 (256)
T 2vec_A           66 LNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DSEGN--HVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQL  140 (256)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ETTSC--EEEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEE
T ss_pred             ccccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eCCCC--EEEECCCeEEEEECCCCeEEEEEECCCCceEEEEEE
Confidence            4456789999899999966555779999998754  55455  68999999999955  67999999754 67776554

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=97.17  E-value=0.0024  Score=51.35  Aligned_cols=70  Identities=17%  Similarity=0.177  Sum_probs=57.1

Q ss_pred             cCCcccCCccCCCCCeEEEEEe-cEEEEEEEeCC-----CeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEe
Q 042644           79 DVDGMVVPHTHPRASEMLFVFK-GVVIAGFVDTN-----RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus        79 ~pgg~~~pH~Hp~a~Ei~yVl~-G~~~v~~~~~~-----~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~  150 (205)
                      .+|.+...|+| ....+++|++ |++..-++|-.     ++.....|..+..++||+|.+|.+.+.++. ++++...+
T Consensus        68 ~~GvlRGlH~h-~q~Klv~~~~~G~v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~-a~~~y~~s  143 (197)
T 1nxm_A           68 RKNVLRGLHAE-PWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDF-VAYSYLVN  143 (197)
T ss_dssp             ETTBEEEEEEC-SSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSE-EEEEEEES
T ss_pred             CCCCcceeeec-ccceEEEEcCCCEEEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCC-eEEEEECC
Confidence            67889999999 5679999999 99876667754     677788999999999999999999998765 55544433

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=97.16  E-value=0.0014  Score=53.58  Aligned_cols=65  Identities=18%  Similarity=0.197  Sum_probs=53.0

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           71 LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        71 is~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      -.+..+.++||..+++|.| ...|+ +||+|++.    + +    ..++.+|+.+..|.|..|.... |++.+.++.
T Consensus       146 E~v~l~r~~~G~~~~~~~h-gG~Ei-lVL~G~~~----d-~----~~~~~~GsWlR~P~gs~h~~~a-g~~g~~i~~  210 (223)
T 3o14_A          146 ETVTHRKLEPGANLTSEAA-GGIEV-LVLDGDVT----V-N----DEVLGRNAWLRLPEGEALSATA-GARGAKIWM  210 (223)
T ss_dssp             CEEEEEEECTTCEEEECCS-SCEEE-EEEEEEEE----E-T----TEEECTTEEEEECTTCCEEEEE-EEEEEEEEE
T ss_pred             cEEEEEEECCCCccCCCCC-CcEEE-EEEEeEEE----E-C----CceECCCeEEEeCCCCccCcEE-CCCCeEEEE
Confidence            3456677899999999999 88886 99999975    2 2    2689999999999999999976 667776554

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=97.15  E-value=0.0024  Score=47.77  Aligned_cols=65  Identities=22%  Similarity=0.172  Sum_probs=52.4

Q ss_pred             CCcccCCc----cCCCCCeEEEEEecEEEEEEEeCCCe---EEEEEEcCCCEEEeCCCCeeEEEecCCccEEE
Q 042644           80 VDGMVVPH----THPRASEMLFVFKGVVIAGFVDTNRQ---VFQVMLKAGEVCVFPRGLLHFGFNVGYEFATV  145 (205)
Q Consensus        80 pgg~~~pH----~Hp~a~Ei~yVl~G~~~v~~~~~~~~---~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~  145 (205)
                      |+++...|    +|+...+.+.|++|++.+...++++.   .......+|+..++|++.+|.+.-..+ ++.+
T Consensus        23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsd-d~~f   94 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTD-DTYF   94 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESST-TCEE
T ss_pred             hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCC-CEEE
Confidence            67888999    58888899999999999987665553   234667999999999999999997544 5555

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=97.07  E-value=0.0056  Score=49.11  Aligned_cols=68  Identities=16%  Similarity=0.152  Sum_probs=53.3

Q ss_pred             cCCcccCCccCCC---CCeEEEEEecEEEEEEEeCC------CeEEEEEEcC--CCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           79 DVDGMVVPHTHPR---ASEMLFVFKGVVIAGFVDTN------RQVFQVMLKA--GEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        79 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~--GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+|.+...|+|..   ..++++|++|++..-++|-.      ++.....|.+  +..++||+|.+|.+.+.++. ++++.
T Consensus        73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~-a~~ly  151 (196)
T 1wlt_A           73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS-IVIYF  151 (196)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE-EEEEE
T ss_pred             CCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEE
Confidence            5788899999954   57999999999966666632      4567788875  68999999999999999764 54443

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=97.04  E-value=0.0076  Score=47.77  Aligned_cols=69  Identities=19%  Similarity=0.080  Sum_probs=53.9

Q ss_pred             cCCcccCCccCC---CCCeEEEEEecEEEEEEEeCC------CeEEEEEEcC--CCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           79 DVDGMVVPHTHP---RASEMLFVFKGVVIAGFVDTN------RQVFQVMLKA--GEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        79 ~pgg~~~pH~Hp---~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~--GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+|.+...|+|.   ....+++|++|++..-++|-.      |+.....|.+  +..++||+|.+|.+.+.++. ++++.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (183)
T 1dzr_A           55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY-AEFLY  133 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEE
Confidence            378899999995   567999999999865556633      4567788865  58999999999999999776 54444


Q ss_pred             E
Q 042644          148 V  148 (205)
Q Consensus       148 ~  148 (205)
                      .
T Consensus       134 ~  134 (183)
T 1dzr_A          134 K  134 (183)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=97.03  E-value=0.0089  Score=49.14  Aligned_cols=76  Identities=21%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEec-EE--EEEEEeCC-------------CeEE------EEEEcCCCEEEe
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKG-VV--IAGFVDTN-------------RQVF------QVMLKAGEVCVF  127 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G-~~--~v~~~~~~-------------~~~~------~~~l~~GDv~~v  127 (205)
                      ..+--.+.+.+|...|.|+|+.-.|-+++.-| .+  ++...+++             |...      ..+|+||+-+-+
T Consensus       105 ~YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl  184 (246)
T 3kmh_A          105 CYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICL  184 (246)
T ss_dssp             CEEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEE
T ss_pred             cceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEec
Confidence            56777788999999999999999999999998 34  44433322             1111      358999999999


Q ss_pred             CCCCeeEEEecCC-ccEEE
Q 042644          128 PRGLLHFGFNVGY-EFATV  145 (205)
Q Consensus       128 P~G~~H~~~N~g~-~~a~~  145 (205)
                      ++|..|++...+. .++.+
T Consensus       185 ~Pg~~H~F~ae~g~G~vli  203 (246)
T 3kmh_A          185 PPGLYHSFWAEAGFGDVLV  203 (246)
T ss_dssp             CTTEEEEEEECTTSCCEEE
T ss_pred             CCCCEEEEEecCCCccEEE
Confidence            9999999987654 34544

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=96.96  E-value=0.0088  Score=48.64  Aligned_cols=68  Identities=16%  Similarity=0.012  Sum_probs=53.2

Q ss_pred             cCCcccCCccCCC---CCeEEEEEecEEEEEEEeCC------CeEEEEEEcCC--CEEEeCCCCeeEEEecCCccEEEEE
Q 042644           79 DVDGMVVPHTHPR---ASEMLFVFKGVVIAGFVDTN------RQVFQVMLKAG--EVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        79 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~G--Dv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+|-+...|+|..   ..++++|++|++..-++|-.      ++.....|.+.  ..++||+|.+|.+.+.++. ++++.
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~~ly  141 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE-ATLCY  141 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC-eEEEE
Confidence            4788999999954   58999999999865556532      45677888764  7999999999999999876 54444

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=96.96  E-value=0.0093  Score=48.11  Aligned_cols=70  Identities=13%  Similarity=0.130  Sum_probs=54.3

Q ss_pred             cCCcccCCccCCC---CCeEEEEEecEEEEEEEeCC------CeEEEEEEcC--CCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           79 DVDGMVVPHTHPR---ASEMLFVFKGVVIAGFVDTN------RQVFQVMLKA--GEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        79 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~--GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+|.+...|+|..   ...+++|++|++..-++|-.      |+.....|.+  +..++||+|..|.+.+.++. ++++.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD-TVMSY  133 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT-EEEEE
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC-eEEEE
Confidence            5788899999954   57999999999866666632      4567788876  57999999999999999766 54444


Q ss_pred             EE
Q 042644          148 VL  149 (205)
Q Consensus       148 ~~  149 (205)
                      ..
T Consensus       134 ~~  135 (205)
T 1oi6_A          134 ML  135 (205)
T ss_dssp             EE
T ss_pred             ec
Confidence            33

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=96.90  E-value=0.013  Score=47.97  Aligned_cols=68  Identities=18%  Similarity=0.118  Sum_probs=53.1

Q ss_pred             cCCcccCCccCCC---CCeEEEEEecEEEEEEEeCC------CeEEEEEEcC--CCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           79 DVDGMVVPHTHPR---ASEMLFVFKGVVIAGFVDTN------RQVFQVMLKA--GEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        79 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~--GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+|-+...|+|..   ...+++|++|++..-++|-.      ++.....|.+  +..++||+|.+|.+.+.++. ++++.
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~vly  152 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STVMY  152 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEEEE
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC-EEEEE
Confidence            5788899999954   57999999999866566532      4566778866  47999999999999999876 54444

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=96.85  E-value=0.0069  Score=52.39  Aligned_cols=70  Identities=20%  Similarity=0.218  Sum_probs=50.8

Q ss_pred             EEEcC-CcccCCccCCCCCeEEEEEecEEEEEEE-eCC---------------------------------CeEEEEEEc
Q 042644           76 TDLDV-DGMVVPHTHPRASEMLFVFKGVVIAGFV-DTN---------------------------------RQVFQVMLK  120 (205)
Q Consensus        76 ~~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~-~~~---------------------------------~~~~~~~l~  120 (205)
                      +-+.| |+..++|+-+. .-++..+.|+=++.+. .++                                 ...++.+|+
T Consensus       145 ~~~gp~g~~~~~H~D~~-dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~  223 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDAY-TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLT  223 (342)
T ss_dssp             EEEECSSCCCCSEECSS-EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEEC
T ss_pred             EEEeCCCCCCCCeECCh-hcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEEC
Confidence            44555 77899999843 4666778899887777 322                                 012578999


Q ss_pred             CCCEEEeCCCCeeEEEecCCccEEEE
Q 042644          121 AGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus       121 ~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      +||++++|+|.+|+..+.++++..-+
T Consensus       224 pGD~LyiP~gwwH~v~s~~~~~slsv  249 (342)
T 1vrb_A          224 PGTMLYLPRGLWHSTKSDQATLALNI  249 (342)
T ss_dssp             TTCEEEECTTCEEEEECSSCEEEEEE
T ss_pred             CCcEEEeCCCccEEEEECCCCceEEE
Confidence            99999999999999998754444333

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=96.84  E-value=0.0082  Score=48.30  Aligned_cols=69  Identities=13%  Similarity=0.067  Sum_probs=54.5

Q ss_pred             cCCcccCCccCC---CCCeEEEEEecEEEEEEEeCC------CeEEEEEEcC--CCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           79 DVDGMVVPHTHP---RASEMLFVFKGVVIAGFVDTN------RQVFQVMLKA--GEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        79 ~pgg~~~pH~Hp---~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~--GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+|.+..+|+|.   ....+++|++|++.--++|-.      |+.....|.+  +..++||+|..|.+.+.++. +.++.
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~-a~~~Y  130 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDD-ATLVF  130 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTT-EEEEE
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCC-eEEEE
Confidence            578899999994   468999999999877777632      5667778876  78999999999999998765 44443


Q ss_pred             E
Q 042644          148 V  148 (205)
Q Consensus       148 ~  148 (205)
                      .
T Consensus       131 ~  131 (201)
T 4hn1_A          131 L  131 (201)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=96.80  E-value=0.0071  Score=49.96  Aligned_cols=73  Identities=18%  Similarity=0.296  Sum_probs=56.1

Q ss_pred             EEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEe--CCCCeeEEEecC-CccEEEEEE
Q 042644           72 SVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVF--PRGLLHFGFNVG-YEFATVFSV  148 (205)
Q Consensus        72 s~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~v--P~G~~H~~~N~g-~~~a~~l~~  148 (205)
                      .+....+.||.-+++|-|.+-..+.||++|++.-.  |+.|.  ..++++||+-..  -+|..|.-+|.. ++++.++-.
T Consensus        42 v~n~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn--~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQl  117 (242)
T 1tq5_A           42 VINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DSMGN--KEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQI  117 (242)
T ss_dssp             EEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ESSSC--EEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEE
T ss_pred             eeccceeCCCCcCCCcCCCCcEEEEEEEEeEEEEE--eCCCC--cEEECCCcEEEEECCCCcEEEEEcCCCCCeEEEEEE
Confidence            34466789998899999966656889999998754  55454  589999999999  456999999975 367766554

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=96.51  E-value=0.015  Score=46.21  Aligned_cols=65  Identities=14%  Similarity=0.246  Sum_probs=47.9

Q ss_pred             EEEEcCC-cccCCccCCCCCeEEEEEecEEEEEEEeCCC----------------------------------eEEEEEE
Q 042644           75 RTDLDVD-GMVVPHTHPRASEMLFVFKGVVIAGFVDTNR----------------------------------QVFQVML  119 (205)
Q Consensus        75 ~~~l~pg-g~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~----------------------------------~~~~~~l  119 (205)
                      .+-+.++ +..++|+-+. .-++.+++|+=++.+..+..                                  +..+.+|
T Consensus       127 ~~wiG~~gs~t~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l  205 (235)
T 4gjz_A          127 NAWFGPQGTISPLHQDPQ-QNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCIL  205 (235)
T ss_dssp             EEEEECTTCEEEEECCSS-EEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEE
T ss_pred             EEEEeCCCCCceeeeccc-cceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEE
Confidence            3445554 4567787754 45777889999888865421                                  1246799


Q ss_pred             cCCCEEEeCCCCeeEEEecCC
Q 042644          120 KAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus       120 ~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      ++||+++||+|..|...|.+.
T Consensus       206 ~pGD~LyiP~gW~H~V~~l~~  226 (235)
T 4gjz_A          206 SPGEILFIPVKYWHYVRALDL  226 (235)
T ss_dssp             CTTCEEEECTTCEEEEEESSS
T ss_pred             CCCCEEEeCCCCcEEEEECCC
Confidence            999999999999999999854

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=96.43  E-value=0.013  Score=50.69  Aligned_cols=72  Identities=10%  Similarity=0.093  Sum_probs=53.0

Q ss_pred             EEEc-CCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-----------------------------------eEEEEEE
Q 042644           76 TDLD-VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-----------------------------------QVFQVML  119 (205)
Q Consensus        76 ~~l~-pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-----------------------------------~~~~~~l  119 (205)
                      +-+. +|...++|+.+. .-+..+++|+=++.+..+..                                   +.++.+|
T Consensus       187 l~iG~~gs~t~~H~D~~-~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l  265 (349)
T 3d8c_A          187 LLIGMEGNVTPAHYGEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVV  265 (349)
T ss_dssp             EEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEE
T ss_pred             EEEECCCCCccceECCh-hcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEE
Confidence            4455 455779999865 56778899998887764320                                   3468999


Q ss_pred             cCCCEEEeCCCCeeEEEecCC-ccEEEEEE
Q 042644          120 KAGEVCVFPRGLLHFGFNVGY-EFATVFSV  148 (205)
Q Consensus       120 ~~GDv~~vP~G~~H~~~N~g~-~~a~~l~~  148 (205)
                      ++||+++||+|.+|...|.++ .....+.+
T Consensus       266 ~pGD~LyiP~gWwH~V~~l~d~~~sisvn~  295 (349)
T 3d8c_A          266 GPGDVLYIPMYWWHHIESLLNGGITITVNF  295 (349)
T ss_dssp             CTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             CCCCEEEECCCCcEEEEEcCCCCcEEEEEE
Confidence            999999999999999999863 33444443

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=96.04  E-value=0.026  Score=47.02  Aligned_cols=72  Identities=22%  Similarity=0.179  Sum_probs=59.4

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCee-EEEecCCccEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLH-FGFNVGYEFATVF  146 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H-~~~N~g~~~a~~l  146 (205)
                      ..|-|-.++.++|+--.|+-.|.-..| +||++|++.++         ...+.++...++|+|+.- .+.-.|.+++.+|
T Consensus        88 d~GaSTl~V~fpp~~~~P~Gi~~ad~E-~fVL~G~i~~G---------~~~l~~h~Y~f~PaGV~~~~~kv~~~~g~~iL  157 (303)
T 2qdr_A           88 DSGASTSRVVLPPKFEAPSGIFTADLE-IFVIKGAIQLG---------EWQLNKHSYSFIPAGVRIGSWKVLGGEEAEIL  157 (303)
T ss_dssp             TTSCEEEEEEECTTCEECCBEESSCEE-EEEEESEEEET---------TEEECTTEEEEECTTCCBCCEEEETTSCEEEE
T ss_pred             CCCcceEEEEecCCCCCCCcccccceE-EEEEEeEEEeC---------CEEecCCceEEecCCCccCceeecCCCCcEEE
Confidence            447899999999999999998865667 99999999864         268999999999999854 3455688899888


Q ss_pred             EEE
Q 042644          147 SVL  149 (205)
Q Consensus       147 ~~~  149 (205)
                      .+-
T Consensus       158 ~fe  160 (303)
T 2qdr_A          158 WME  160 (303)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            773

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=96.04  E-value=0.051  Score=45.54  Aligned_cols=81  Identities=19%  Similarity=0.204  Sum_probs=53.1

Q ss_pred             cceEEEEEEEcCCccc---CCccCCCC--C------eEEEE-E---ecEEEEEEEeCCCe-EEEEEEcCCCEEEeCCCCe
Q 042644           69 LGLSVARTDLDVDGMV---VPHTHPRA--S------EMLFV-F---KGVVIAGFVDTNRQ-VFQVMLKAGEVCVFPRGLL  132 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~---~pH~Hp~a--~------Ei~yV-l---~G~~~v~~~~~~~~-~~~~~l~~GDv~~vP~G~~  132 (205)
                      -.+-+..+ +.|||.-   |||.|.+.  .      |+.|. +   +|.+.-.+..++++ -....++-||++++|+|. 
T Consensus       151 ~~LlvgEv-~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~Gy-  228 (270)
T 2qjv_A          151 DSLLVVEV-YTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXGY-  228 (270)
T ss_dssp             SSCEEEEE-EECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSSB-
T ss_pred             ceEEEEEE-EcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCCc-
Confidence            34666666 7788854   99999754  5      88875 3   35555544443332 246899999999999999 


Q ss_pred             eEEEecCCccEEEEEEEeC
Q 042644          133 HFGFNVGYEFATVFSVLNS  151 (205)
Q Consensus       133 H~~~N~g~~~a~~l~~~~s  151 (205)
                      |.....-.-...+|-+.-.
T Consensus       229 Hp~~a~pGy~~YylwvMaG  247 (270)
T 2qjv_A          229 HPVATIAGYDNYYLNVMAG  247 (270)
T ss_dssp             CCEEECTTCEEEEEEEEEC
T ss_pred             CCCcCCCCcccEEEEEEEC
Confidence            9965442333445554433

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=95.77  E-value=0.034  Score=49.73  Aligned_cols=63  Identities=22%  Similarity=0.367  Sum_probs=46.0

Q ss_pred             EEEcCCc-c-cCCccCCCCCeEEEEEecEEEEEEEeCCC----------------eEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644           76 TDLDVDG-M-VVPHTHPRASEMLFVFKGVVIAGFVDTNR----------------QVFQVMLKAGEVCVFPRGLLHFGFN  137 (205)
Q Consensus        76 ~~l~pgg-~-~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~----------------~~~~~~l~~GDv~~vP~G~~H~~~N  137 (205)
                      +-+.|+| . .++||- ...-++..++|+=++.+..+..                ..+..+|++||++++|+|.+|+..+
T Consensus       143 ~y~~~~g~~g~~~H~D-~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s  221 (442)
T 2xdv_A          143 VYITPAGSQGLPPHYD-DVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADT  221 (442)
T ss_dssp             EEEECTTCBCSCSEEC-SSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEEC
T ss_pred             eEECCCCCCCccceEC-CcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEe
Confidence            3445555 3 369997 3445666778988877766531                1247899999999999999999988


Q ss_pred             cC
Q 042644          138 VG  139 (205)
Q Consensus       138 ~g  139 (205)
                      .+
T Consensus       222 ~~  223 (442)
T 2xdv_A          222 PA  223 (442)
T ss_dssp             CS
T ss_pred             cC
Confidence            75

>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*

Probab=95.66  E-value=0.57  Score=36.57  Aligned_cols=128  Identities=15%  Similarity=-0.003  Sum_probs=83.4

Q ss_pred             CeeEEEeccCCC----CCC--CccceEEEEEEEcCCcccCCccCCCCCeEEEEEecE-EEEEEEeCCCeEEEEEEc----
Q 042644           52 YSSLTLVTAADF----PGL--NTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGV-VIAGFVDTNRQVFQVMLK----  120 (205)
Q Consensus        52 g~~~~~~~~~~~----P~l--~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~-~~v~~~~~~~~~~~~~l~----  120 (205)
                      ||+.++......    +..  .....+....-|.+|.....|.- ++.|+.+-..|. +++.++.++|+....+|.    
T Consensus        28 GG~yrEt~rs~~~v~~~~~~~~R~~~TaIYfLL~~~~~S~~HRv-~sdEiW~~~~G~pL~l~~~~~dG~~~~~~LG~d~~  106 (172)
T 3loi_A           28 GGWFRETYRSDVQVEAEGFDGKRSVLTMIYYLMQAGQPDPFHRV-KSDETFVHNLGGSMKIHMIHPDGSYSCSILGNPLE  106 (172)
T ss_dssp             SSEEEEEEECSCEECCTTSSSCEESCEEEEEEEETTCCEEEEEC-SSEEEEEEEEESCEEEEEECTTSCEEEEEESCTTT
T ss_pred             CCeEEEEEECcCcccCCCCCCCcccceEEEEEEcCCCCccCEEe-cCCEEEEEEcCCCEEEEEEcCCCceEEEEeCCCcc
Confidence            667776665432    111  12235667777888887666666 689999999997 688888888887777775    


Q ss_pred             CCC---EEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHHHHhhh
Q 042644          121 AGE---VCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEM  190 (205)
Q Consensus       121 ~GD---v~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~l~~  190 (205)
                      +|+   -++||+|.+...+. |  ...++...  -.||+..-...+     .+.+.|.+.|---++.+++|-.
T Consensus       107 ~Ge~~pQ~vVP~G~WqaA~~-~--~~~LVsct--VaPGF~f~dfel-----~~~~~L~~~~P~~~~~I~~lt~  169 (172)
T 3loi_A          107 HPEARHQVVVPRRVWFAQEV-D--GYCLASVL--VAPGFDFKDFSL-----GKREELIKEYPQHRDVIMRCTS  169 (172)
T ss_dssp             STTCBSEEEECTTCEEEEEE-S--SEEEEEEE--EESCCCGGGCEE-----CCHHHHHHHCGGGHHHHHHTSC
T ss_pred             cCCcceEEEECCCEEEEEEe-C--CcEEEEEE--EcCCccchhcEE-----cCHHHHHHHCchHHHHHHHhcc
Confidence            577   78999999888776 3  33333322  225543222222     2567777777777778877754

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=95.51  E-value=0.044  Score=49.17  Aligned_cols=76  Identities=16%  Similarity=0.122  Sum_probs=54.1

Q ss_pred             EcCCcccCCccCCCCCe-EEEEEecEEEEEEEeCC-------------------------CeEEEEEEcCCCEEEeCCCC
Q 042644           78 LDVDGMVVPHTHPRASE-MLFVFKGVVIAGFVDTN-------------------------RQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        78 l~pgg~~~pH~Hp~a~E-i~yVl~G~~~v~~~~~~-------------------------~~~~~~~l~~GDv~~vP~G~  131 (205)
                      -.+|...+.|+.+..+- +..+++|+=++.+.-|.                         .+.+..++++||+++||.|.
T Consensus       203 Gp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIPsGW  282 (451)
T 2yu1_A          203 SVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPSGW  282 (451)
T ss_dssp             ECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEECTTC
T ss_pred             ccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeCCCc
Confidence            34556779999987654 56799999988877653                         12357899999999999999


Q ss_pred             eeEEEecCCccEEEEEEEeCCC
Q 042644          132 LHFGFNVGYEFATVFSVLNSQN  153 (205)
Q Consensus       132 ~H~~~N~g~~~a~~l~~~~s~~  153 (205)
                      +|...|..+.-++-.-++++.+
T Consensus       283 wH~V~nledsIait~NF~~~~n  304 (451)
T 2yu1_A          283 IHAVYTPTDTLVFGGNFLHSFN  304 (451)
T ss_dssp             EEEEECSSCEEEEEEEECCSSS
T ss_pred             eEEEecCCCeEEEeeeeCCccc
Confidence            9999997544332223344443

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=95.49  E-value=0.037  Score=50.12  Aligned_cols=62  Identities=16%  Similarity=0.210  Sum_probs=49.4

Q ss_pred             cCCcccCCccCCCCCe-EEEEEecEEEEEEEeCC-------------------------CeEEEEEEcCCCEEEeCCCCe
Q 042644           79 DVDGMVVPHTHPRASE-MLFVFKGVVIAGFVDTN-------------------------RQVFQVMLKAGEVCVFPRGLL  132 (205)
Q Consensus        79 ~pgg~~~pH~Hp~a~E-i~yVl~G~~~v~~~~~~-------------------------~~~~~~~l~~GDv~~vP~G~~  132 (205)
                      ..|+..+.|+.+..+- +..+++|+=++.+.-|.                         .+.+..++++||+++||.|.+
T Consensus       274 ~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIPsGWw  353 (488)
T 3kv5_D          274 VQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWI  353 (488)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeCCCce
Confidence            4566789999987763 55799999988887653                         123578999999999999999


Q ss_pred             eEEEecCC
Q 042644          133 HFGFNVGY  140 (205)
Q Consensus       133 H~~~N~g~  140 (205)
                      |+.+|..+
T Consensus       354 H~V~nled  361 (488)
T 3kv5_D          354 HAVLTSQD  361 (488)
T ss_dssp             EEEEEEEE
T ss_pred             EEeeCCCC
Confidence            99999743

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=95.44  E-value=0.058  Score=46.54  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=49.2

Q ss_pred             EEEcC-CcccCCccCCCCC-eEEEEEecEEEEEEEeCCC---------------------------------------eE
Q 042644           76 TDLDV-DGMVVPHTHPRAS-EMLFVFKGVVIAGFVDTNR---------------------------------------QV  114 (205)
Q Consensus        76 ~~l~p-gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~~~~~~---------------------------------------~~  114 (205)
                      +-+.+ |...+.|+.+..+ -+..++.|+=++.+..++.                                       +.
T Consensus       176 ~~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~~  255 (336)
T 3k2o_A          176 FVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKP  255 (336)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGCC
T ss_pred             EEECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCce
Confidence            34444 4567889987654 5778999988877765431                                       12


Q ss_pred             EEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644          115 FQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus       115 ~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      ++.++++||++++|+|.+|+..|.++
T Consensus       256 ~~~~l~pGd~l~iP~gw~H~v~~~~~  281 (336)
T 3k2o_A          256 LEILQKPGETVFVPGGWWHVVLNLDT  281 (336)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEESSC
T ss_pred             EEEEECCCCEEEeCCCCcEEEecCCC
Confidence            46889999999999999999999865

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=95.37  E-value=0.044  Score=47.11  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=50.2

Q ss_pred             EEEEcC-CcccCCccCCCCCeEEEEEecEEEEEEEeCC------------------------------CeEEEEEEcCCC
Q 042644           75 RTDLDV-DGMVVPHTHPRASEMLFVFKGVVIAGFVDTN------------------------------RQVFQVMLKAGE  123 (205)
Q Consensus        75 ~~~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~------------------------------~~~~~~~l~~GD  123 (205)
                      .+-+.+ |+..++|+-+. .-++.+++|+=++.+..+.                              .+.++.+|++||
T Consensus       170 ~l~~g~~g~~~~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pGD  248 (338)
T 3al5_A          170 VFRISSPGLQLWTHYDVM-DNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGD  248 (338)
T ss_dssp             EEEEECTTCEEEEECCSS-EEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTTC
T ss_pred             eeEECCCCCCccceECCc-ccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCCC
Confidence            334444 55678898764 4566788999888776541                              024688999999


Q ss_pred             EEEeCCCCeeEEEecCCccEEEEE
Q 042644          124 VCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus       124 v~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      +++||+|.+|...|.+  ....+.
T Consensus       249 ~LyiP~gWwH~v~~l~--~sisvn  270 (338)
T 3al5_A          249 VLFIPALWFHNVISEE--FGVGVN  270 (338)
T ss_dssp             EEEECTTCEEEEEESS--CEEEEE
T ss_pred             EEEECCCCeEEEeeCC--CEEEEE
Confidence            9999999999999984  334444

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=95.15  E-value=0.08  Score=47.44  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=49.8

Q ss_pred             EcCCcccCCccCCCCCe-EEEEEecEEEEEEEeCC-------------------------CeEEEEEEcCCCEEEeCCCC
Q 042644           78 LDVDGMVVPHTHPRASE-MLFVFKGVVIAGFVDTN-------------------------RQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        78 l~pgg~~~pH~Hp~a~E-i~yVl~G~~~v~~~~~~-------------------------~~~~~~~l~~GDv~~vP~G~  131 (205)
                      -..|+....|.-+..+- +..|++|+=++.+.-|.                         .+.+..++++||+++||.|.
T Consensus       238 G~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIPsGW  317 (447)
T 3kv4_A          238 SVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGW  317 (447)
T ss_dssp             ECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEECTTC
T ss_pred             eCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecCCCC
Confidence            34566778899887764 45799999988877553                         12357899999999999999


Q ss_pred             eeEEEecCCc
Q 042644          132 LHFGFNVGYE  141 (205)
Q Consensus       132 ~H~~~N~g~~  141 (205)
                      +|+.+|..+.
T Consensus       318 wH~V~nleds  327 (447)
T 3kv4_A          318 IHAVLTPVDC  327 (447)
T ss_dssp             EEEEEESSCE
T ss_pred             eEEEecCCCE
Confidence            9999998544

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=95.12  E-value=0.11  Score=43.52  Aligned_cols=67  Identities=18%  Similarity=0.194  Sum_probs=52.2

Q ss_pred             EEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCC--CCeeEEEecCCccEEEEE
Q 042644           77 DLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR--GLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        77 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~--G~~H~~~N~g~~~a~~l~  147 (205)
                      ...++.-+++|=|.+-.-+.||++|++.-.  |+-|.  ..++++||+=..-+  |..|.-+|..+++++.+=
T Consensus        45 ~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~--DS~Gn--~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQ  113 (277)
T 2p17_A           45 DIFERGTFDVHPHRGIETVTYVISGELEHF--DSKAG--HSTLGPGDVQWMTAGRGVVHKEDPASGSTVHSLQ  113 (277)
T ss_dssp             EEECTTCCCCEEECSEEEEEEEEESCEEEE--ETTTE--EEEECTTCEEEEECTTCEEEEEEECTTCCEEEEE
T ss_pred             CCCCCCCCCCCCCCCcEEEEEEEEeEEEEe--eCCCC--ceEECCCeEEEEeCCCCEEEEeecCCCCCEEEEE
Confidence            667888899999955444669999998754  55565  68999999888876  688999998777776554

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=95.10  E-value=0.063  Score=46.99  Aligned_cols=63  Identities=17%  Similarity=0.204  Sum_probs=49.7

Q ss_pred             EcCCcccCCccCCCCCe-EEEEEecEEEEEEEeCC-------------------------CeEEEEEEcCCCEEEeCCCC
Q 042644           78 LDVDGMVVPHTHPRASE-MLFVFKGVVIAGFVDTN-------------------------RQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        78 l~pgg~~~pH~Hp~a~E-i~yVl~G~~~v~~~~~~-------------------------~~~~~~~l~~GDv~~vP~G~  131 (205)
                      -.+|+..+.|..+..+- +..+++|+=++.+.-|.                         .+.+..++++||+++||.|.
T Consensus       154 Gp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIPsGW  233 (371)
T 3k3o_A          154 SVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGW  233 (371)
T ss_dssp             ECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEECTTC
T ss_pred             cCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeCCCC
Confidence            35566789999988775 45799999888877543                         12357899999999999999


Q ss_pred             eeEEEecCC
Q 042644          132 LHFGFNVGY  140 (205)
Q Consensus       132 ~H~~~N~g~  140 (205)
                      +|+.+|..+
T Consensus       234 wH~V~nled  242 (371)
T 3k3o_A          234 IHAVLTPVD  242 (371)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEecCCC
Confidence            999999743

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=95.03  E-value=0.17  Score=45.74  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=45.4

Q ss_pred             EEEEcCCcc--cCCccCCCCCeEEEEEecEEEEEEEeCCC--------------------eEEEEEEcCCCEEEeCCCCe
Q 042644           75 RTDLDVDGM--VVPHTHPRASEMLFVFKGVVIAGFVDTNR--------------------QVFQVMLKAGEVCVFPRGLL  132 (205)
Q Consensus        75 ~~~l~pgg~--~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~--------------------~~~~~~l~~GDv~~vP~G~~  132 (205)
                      .+-+.|+|.  ++||+=+. .-++.-++|+=+..+..+..                    ..++.+|++||++++|+|.+
T Consensus       167 N~Y~tp~Gs~g~~pH~D~~-DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~  245 (489)
T 4diq_A          167 NVYLTPPNSQGFAPHYDDI-EAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFI  245 (489)
T ss_dssp             EEEEECSSBCCSCCBCCSS-EEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCE
T ss_pred             eEEecCCCcccccCccCCc-ceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCc
Confidence            344555553  57998743 33444556666666655421                    12478999999999999999


Q ss_pred             eEEEecCCcc
Q 042644          133 HFGFNVGYEF  142 (205)
Q Consensus       133 H~~~N~g~~~  142 (205)
                      |+..+.+++.
T Consensus       246 H~~~s~~~~~  255 (489)
T 4diq_A          246 HQAECQDGVH  255 (489)
T ss_dssp             EEEEBCSSCC
T ss_pred             eEEEecCCCc
Confidence            9999986443

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=95.01  E-value=0.034  Score=47.14  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEE--eC-------CCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV--DT-------NRQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~--~~-------~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      .+..+|+.+.||+.+.||.=+  .|+.....|..++.+-  +.       +++  .+.+++|+++++....+|+..|.|+
T Consensus        90 ~l~~vRlrL~PG~~I~~HrD~--~~l~~~~~~~~RlHIPL~Tnp~~~f~vdg~--~~~m~~GE~w~~d~~~~H~v~N~g~  165 (290)
T 1e5r_A           90 HLQMARSRNLKNAIVIPHRDF--VELDREVDRYFRTFMVLEDSPLAFHSNEDT--VIHMRPGEIWFLDAATVHSAVNFSE  165 (290)
T ss_dssp             SEEEEEEEEEESEEEEEECCC----------CBCCEEEECSCCTTEEEEETTE--EECCCTTEEEECCTTSCEEEEESSS
T ss_pred             hhheEEEEeCCCCEeeCccCc--cccccccCCceEEEeeEecCCCcEEEECCE--EEecCCCCEEEEcCCCeeEEEcCCC
Confidence            347788899999999999443  2555445666554432  21       233  6889999999999999999999987


Q ss_pred             cc-EEEEE
Q 042644          141 EF-ATVFS  147 (205)
Q Consensus       141 ~~-a~~l~  147 (205)
                      ++ ..+++
T Consensus       166 ~~RIhLv~  173 (290)
T 1e5r_A          166 ISRQSLCV  173 (290)
T ss_dssp             SCCCEEEE
T ss_pred             CCeEEEEE
Confidence            54 44443

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=94.79  E-value=0.11  Score=43.64  Aligned_cols=53  Identities=8%  Similarity=0.070  Sum_probs=40.9

Q ss_pred             EcCCccc-CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec
Q 042644           78 LDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV  138 (205)
Q Consensus        78 l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~  138 (205)
                      +.+|... ..-.   ..-++++++|+..|.+   +++  .+.|++||.+.||+|..|.+...
T Consensus       214 ~G~Ges~~~~~~---~d~wiWqLEGss~Vt~---~~q--~~~L~~~DsLLIpa~~~y~~~r~  267 (286)
T 2qnk_A          214 YGQGSSEGLRQN---VDVWLWQLEGSSVVTM---GGR--RLSLAPDDSLLVLAGTSYAWERT  267 (286)
T ss_dssp             ECSEEEEECCCS---SCEEEEEEESCEEEEE---TTE--EEEECTTEEEEECTTCCEEEEEC
T ss_pred             EcCCccccccCc---CcEEEEEEcCceEEEE---CCe--EEeccCCCEEEecCCCeEEEEec
Confidence            6666533 2222   2678999999998776   555  79999999999999999999753

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=94.75  E-value=0.09  Score=46.41  Aligned_cols=62  Identities=16%  Similarity=0.210  Sum_probs=49.1

Q ss_pred             cCCcccCCccCCCCCe-EEEEEecEEEEEEEeCC-------------------------CeEEEEEEcCCCEEEeCCCCe
Q 042644           79 DVDGMVVPHTHPRASE-MLFVFKGVVIAGFVDTN-------------------------RQVFQVMLKAGEVCVFPRGLL  132 (205)
Q Consensus        79 ~pgg~~~pH~Hp~a~E-i~yVl~G~~~v~~~~~~-------------------------~~~~~~~l~~GDv~~vP~G~~  132 (205)
                      ..|+..+.|+.+..+- +..+++|+=++.+.-|.                         .+.+...+++||+++||.|.+
T Consensus       183 p~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfIPsGW~  262 (397)
T 3kv9_A          183 VQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWI  262 (397)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEeCCCCe
Confidence            4466778899988764 45799999888887653                         123578999999999999999


Q ss_pred             eEEEecCC
Q 042644          133 HFGFNVGY  140 (205)
Q Consensus       133 H~~~N~g~  140 (205)
                      |+..|..+
T Consensus       263 H~V~nled  270 (397)
T 3kv9_A          263 HAVLTSQD  270 (397)
T ss_dssp             EEEEEEEE
T ss_pred             EEccCCcC
Confidence            99999743

>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}

Probab=94.72  E-value=1.2  Score=36.10  Aligned_cols=134  Identities=12%  Similarity=0.010  Sum_probs=85.3

Q ss_pred             CCCCeeEEEeccCCCC-----CCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecE-EEEEEEeCCC----------
Q 042644           49 KFPYSSLTLVTAADFP-----GLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGV-VIAGFVDTNR----------  112 (205)
Q Consensus        49 ~~~g~~~~~~~~~~~P-----~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~-~~v~~~~~~~----------  112 (205)
                      +- ||+..+.......     .-.....+...+-|.+|....+|.- ++.|+.+-..|. +++.++.+++          
T Consensus        34 PE-GG~yrEt~Rs~~~v~~~~~~~R~~~TaIYfLL~~g~~S~~HRv-~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~~~  111 (225)
T 3m3i_A           34 PE-GGYYSEVVRSAHKVDNEEGNRRHAYTTIYFLCTPESPSHLHRL-CSDETWMYHAGDPLQLHVILKDPQDEDRIAAQP  111 (225)
T ss_dssp             TT-SSEEEEEEECSSEEECTTSCEEESCEEEEEEECSSSCEEEEEC-SSEEEEEEEEESCEEEEEEESSSTTTTC-----
T ss_pred             CC-CceEEEEEECCCcccCCCCCCcccceeEEEEecCCCCcccEEe-cCCEEEEEECCCCEEEEEEcCCCcccccccccc
Confidence            44 8888887765432     1111235666677888886666655 688999999998 5777887776          


Q ss_pred             ------------------eEEEEEEcC----CC--EEEeCCCCeeEEEecCCc-----cEEEEEEEeCCCCceeeccccc
Q 042644          113 ------------------QVFQVMLKA----GE--VCVFPRGLLHFGFNVGYE-----FATVFSVLNSQNPGVVSISDAA  163 (205)
Q Consensus       113 ------------------~~~~~~l~~----GD--v~~vP~G~~H~~~N~g~~-----~a~~l~~~~s~~pg~~~~~~~~  163 (205)
                                        +....+|.+    |+  -++||+|.+...+..+++     ...+++..  -.||+..-...+
T Consensus       112 ~~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCt--VaPGFdF~DFel  189 (225)
T 3m3i_A          112 PAAPQAETDTADARPKYQVYRRVLVGARVERGELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCI--VSPGFDYRDFEI  189 (225)
T ss_dssp             -------------CCSSCEEEEEEESSCGGGTCBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEE--EESCCCGGGCEE
T ss_pred             cccccccccccccccccCceEEEEeCCCccCCceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEE--EcCCccchhcEe
Confidence                              455666644    66  689999998888766543     33333322  125543222222


Q ss_pred             cCCCCCCHHHHHhhcCCCHHHHHHhhhc
Q 042644          164 FSDFDTIDDLVRKFIPFLCWTIRVSEMS  191 (205)
Q Consensus       164 f~~~~~~~evLa~af~v~~~~v~~l~~~  191 (205)
                           ++.+.|.+.|.--++.+++|...
T Consensus       190 -----~~~~~L~~~~P~~~~~I~~lt~~  212 (225)
T 3m3i_A          190 -----FTQAQLMELYPQHEAVIKQMAYE  212 (225)
T ss_dssp             -----CBHHHHHHHCGGGHHHHHHHSBC
T ss_pred             -----cCHHHHHHHCchHHHHHHHhchh
Confidence                 25677777777777888887653

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=94.53  E-value=0.11  Score=45.77  Aligned_cols=63  Identities=14%  Similarity=0.189  Sum_probs=49.3

Q ss_pred             EcCCcccCCccCCCCCe-EEEEEecEEEEEEEeCC-------------------------CeEEEEEEcCCCEEEeCCCC
Q 042644           78 LDVDGMVVPHTHPRASE-MLFVFKGVVIAGFVDTN-------------------------RQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        78 l~pgg~~~pH~Hp~a~E-i~yVl~G~~~v~~~~~~-------------------------~~~~~~~l~~GDv~~vP~G~  131 (205)
                      -..|+....|.-+..+- +..+++|+=++.+.-|.                         .+.+..++++||+++||.|.
T Consensus       181 Gp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIPsGW  260 (392)
T 3pua_A          181 CVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGW  260 (392)
T ss_dssp             ECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEECTTC
T ss_pred             eCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeCCCc
Confidence            35566788999987764 55799999888877553                         12357899999999999999


Q ss_pred             eeEEEecCC
Q 042644          132 LHFGFNVGY  140 (205)
Q Consensus       132 ~H~~~N~g~  140 (205)
                      +|+.+|..+
T Consensus       261 wH~V~nled  269 (392)
T 3pua_A          261 IYATLTPVD  269 (392)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEecCCC
Confidence            999999743

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=94.51  E-value=0.099  Score=46.88  Aligned_cols=56  Identities=13%  Similarity=0.107  Sum_probs=43.0

Q ss_pred             CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           85 VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        85 ~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ..-++.+..|++++-+|++.+.-.  =|   ...+++||+++||+|+.+.+.-.+  +++.++
T Consensus       171 ~~f~NaDGD~Livpq~G~l~i~TE--fG---~L~v~pgei~VIPRGi~frv~l~~--p~Rgyi  226 (471)
T 1eyb_A          171 RCFYNSDGDFLIVPQKGNLLIYTE--FG---KMLVQPNEICVIQRGMRFSIDVFE--ETRGYI  226 (471)
T ss_dssp             EEEEESSEEEEEEEEESCEEEEET--TE---EEEECTTEEEEECTTCCEEEECSS--SEEEEE
T ss_pred             ceeecCCCCEEEEEEeCCEEEEEe--cc---cEEeccCCEEEECCccEEEEeeCC--CceEEE
Confidence            344566888999999999987632  24   478999999999999999996554  665544

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=94.13  E-value=0.28  Score=41.36  Aligned_cols=73  Identities=15%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             EEEEEEEcCCcccCCccCCCCCeEEEEE-ecEEEEEEEeCCCeEEEEEEcCCCEEEeCC--CCeeEEEecCCccEEEEEE
Q 042644           72 SVARTDLDVDGMVVPHTHPRASEMLFVF-KGVVIAGFVDTNRQVFQVMLKAGEVCVFPR--GLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        72 s~~~~~l~pgg~~~pH~Hp~a~Ei~yVl-~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~--G~~H~~~N~g~~~a~~l~~  148 (205)
                      -+....+.|+.-+++|=|.+-.-+.||+ +|++.-.  |+-|.  ..++++||+=..-+  |..|.-+|..+++++.+=.
T Consensus        41 ~ld~~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~--DS~Gn--~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQl  116 (290)
T 1j1l_A           41 LFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE--DFCGH--TGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQL  116 (290)
T ss_dssp             EEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEE--ETTSC--EEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEE
T ss_pred             EEEccccCCCCCCCCCCCCCeEEEEEECcceEEEEe--eCCCC--ceEECCCcEEEEeCCCCEEEEeEcCCCCCEEEEEE
Confidence            4445567888778999995443466999 9998754  55555  58999999888865  6889999986677766543

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=93.87  E-value=0.36  Score=40.73  Aligned_cols=77  Identities=18%  Similarity=0.238  Sum_probs=41.8

Q ss_pred             ceEEEEEEEcCCcc---cCCccCCCCCeEEEEEe----cEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644           70 GLSVARTDLDVDGM---VVPHTHPRASEMLFVFK----GVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus        70 gis~~~~~l~pgg~---~~pH~Hp~a~Ei~yVl~----G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~  142 (205)
                      .+-+..-.+.|||.   .|||.|-+..|..|--+    |.+ +.+..+-++.....++-||++++|+|..|..  .|...
T Consensus       179 qllmg~evltpGg~WSSyPpHkHDrr~E~yyYF~l~p~~~v-~h~~g~pdEtrh~~V~n~daVlvP~wgyHp~--~Gt~~  255 (289)
T 1ywk_A          179 QLQMGYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRI-FHMMGKPDETKHLVMSNEQAAISPSWSIHSG--VGTSN  255 (289)
T ss_dssp             SCEEEEEEECTTCCCCC--------CEEEEEEESCCTTCCE-EEEESSTTSCEEEEECTTEEEEECTTSCCCE--EESSC
T ss_pred             eEEEEEEEEeCCCCcCCCCCccCCCCCeeEEEEEeCCCCeE-EEECCCCCceEEEEEECCCEEEeCCCcccCC--CCCcC
Confidence            45566677888873   59999977677766432    222 2223322343456889999999999999973  34444


Q ss_pred             EEEEEEE
Q 042644          143 ATVFSVL  149 (205)
Q Consensus       143 a~~l~~~  149 (205)
                      -.+|.+.
T Consensus       256 Y~ylwvM  262 (289)
T 1ywk_A          256 YSFIWAM  262 (289)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            3344433

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=93.82  E-value=0.31  Score=34.29  Aligned_cols=68  Identities=13%  Similarity=-0.022  Sum_probs=47.6

Q ss_pred             EEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           72 SVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        72 s~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ....-.+.||.   .+....+.|+.-|++|++++.+-   |...+.++++||.|.||++.---++-.  ++...++
T Consensus        24 ~~TvGVm~pGe---ytF~T~~~E~M~vvsG~~~V~lp---g~~ew~~~~aGesF~Vpans~F~l~v~--~~~~YlC   91 (94)
T 2oyz_A           24 DVSVGVMLPGE---YTFGTQAPERMTVVKGALVVKRV---GEADWTTYSSGESFDVEGNSSFELQVK--DATAYLC   91 (94)
T ss_dssp             EEEEEEECSEE---EEEEESSCEEEEEEESEEEEEET---TCSSCEEEETTCEEEECSSEEEEEEES--SCEEEEE
T ss_pred             CEEEEEEeceE---EEEcCCCeEEEEEEEeEEEEEcC---CCCcCEEECCCCEEEECCCCEEEEEEc--ccEeEEE
Confidence            33344566664   23344578999999999999873   322379999999999999988777653  4444444

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=93.68  E-value=0.45  Score=37.95  Aligned_cols=77  Identities=14%  Similarity=0.198  Sum_probs=51.8

Q ss_pred             EEEEEEEcCCcccCCccCCCCCeEEEE----Eec-EEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           72 SVARTDLDVDGMVVPHTHPRASEMLFV----FKG-VVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        72 s~~~~~l~pgg~~~pH~Hp~a~Ei~yV----l~G-~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      ++....+.||+.+.||..|....+-+-    +.. ...+.+   +++  ....++|+++++--...|+..|.++++-+ +
T Consensus       103 ~a~fs~L~pG~~I~pH~g~~n~~lR~HL~L~~p~~~~~i~V---~~~--~~~w~eGe~~~fDds~~Hev~N~~d~~Rv-v  176 (197)
T 3rcq_A          103 QIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRC---ANE--TKTWEEGKVLIFDDSFEHEVWQDASSFRL-I  176 (197)
T ss_dssp             EEEEEEECTTEEEEEECCSCTTEEEEEEEEECCSSSEEEEE---TTE--EECCCBTCEEEECTTSCEEEEECSSSCEE-E
T ss_pred             eEEEEEeCCCCCcCCeeCCCCCeEEEEEEEEeCCCCcEEEE---CCE--EEEeeCCcEEEEcCCeEEEEEECCCCCEE-E
Confidence            566678999999999999865444321    111 122221   233  67889999999999999999999887543 3


Q ss_pred             EEEeCCCC
Q 042644          147 SVLNSQNP  154 (205)
Q Consensus       147 ~~~~s~~p  154 (205)
                      .+++--.|
T Consensus       177 L~~D~~rP  184 (197)
T 3rcq_A          177 FIVDVWHP  184 (197)
T ss_dssp             EEEEEECT
T ss_pred             EEEeeeCC
Confidence            34443333

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=93.22  E-value=0.18  Score=45.88  Aligned_cols=62  Identities=19%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             EcCCcccCCccCCCCC-eEEEEEecEEEEEEEeCC-------------------------CeEEEEEEcCCCEEEeCCCC
Q 042644           78 LDVDGMVVPHTHPRAS-EMLFVFKGVVIAGFVDTN-------------------------RQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        78 l~pgg~~~pH~Hp~a~-Ei~yVl~G~~~v~~~~~~-------------------------~~~~~~~l~~GDv~~vP~G~  131 (205)
                      -..|+....|.-+..+ -+.+|++|+=++.+.-|.                         ++....++++||+++||+|.
T Consensus       303 g~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIPsGW  382 (528)
T 3pur_A          303 GMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGW  382 (528)
T ss_dssp             ECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEECTTC
T ss_pred             eCCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEecCCc
Confidence            3456677889887766 456799999888877653                         12246899999999999999


Q ss_pred             eeEEEecC
Q 042644          132 LHFGFNVG  139 (205)
Q Consensus       132 ~H~~~N~g  139 (205)
                      +|+.+|..
T Consensus       383 ~HaV~tle  390 (528)
T 3pur_A          383 IHAVLTPV  390 (528)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEecCC
Confidence            99999973

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=92.60  E-value=0.48  Score=34.32  Aligned_cols=69  Identities=12%  Similarity=-0.003  Sum_probs=49.3

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      .-.+.||. .|.+....+.|+.-|++|++++.+-   |...+.++++|+.|.||.+.-.-++-.  ++...++.+
T Consensus        41 lGVm~PGe-~~YtF~T~~~E~MevvsG~l~V~Lp---g~~eW~~~~aGesF~VpanssF~lkv~--~~~~Y~C~y  109 (111)
T 3hqx_A           41 LGVILPTE-QPLTFETHVPERMEIISGECRVKIA---DSTESELFRAGQSFYVPGNSLFKIETD--EVLDYVCHL  109 (111)
T ss_dssp             EEEECCCS-SCEEEECSSCEEEEEEESEEEEEET---TCSSCEEEETTCEEEECTTCEEEEECS--SCEEEEEEE
T ss_pred             EEEEeccc-cceEEcCCCcEEEEEEEeEEEEEcC---CcccCEEeCCCCEEEECCCCcEEEEEC--cceeEEEEc
Confidence            34466763 2244555688999999999999873   322379999999999999988777643  455555543

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A

Probab=92.20  E-value=0.49  Score=37.93  Aligned_cols=78  Identities=22%  Similarity=0.154  Sum_probs=47.2

Q ss_pred             EEEEEEcCCcccCCccCCCCC--eEEEEEe--cEEEEEEEeCC------------------CeEEEEEEcCCCEEEeCCC
Q 042644           73 VARTDLDVDGMVVPHTHPRAS--EMLFVFK--GVVIAGFVDTN------------------RQVFQVMLKAGEVCVFPRG  130 (205)
Q Consensus        73 ~~~~~l~pgg~~~pH~Hp~a~--Ei~yVl~--G~~~v~~~~~~------------------~~~~~~~l~~GDv~~vP~G  130 (205)
                      .-....++|+...+|.|+++.  -++|+-.  +.+.+.+.++.                  .......-++||+++||+-
T Consensus       105 ~W~~~~~~G~~~~~H~H~~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~~~~~~~~~~~~i~P~~G~lvlFpS~  184 (216)
T 2rg4_A          105 IWINILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGAREELRTFRSVAPKVGDVLLWESW  184 (216)
T ss_dssp             EEEEEECTTCCEEEECCTTCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCCCSCGGGCSEEEECCCTTEEEEEETT
T ss_pred             EEEEEcCCCCcccCccCCCCeEEEEEEEECCCCCccEEEeCCccccccccCcccccCcccCCCeeEecCCCCeEEEECCC
Confidence            344567899999999998753  2334432  22334444442                  1112456699999999999


Q ss_pred             CeeEEEecCCccEEEEEEEe
Q 042644          131 LLHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus       131 ~~H~~~N~g~~~a~~l~~~~  150 (205)
                      +.|...-...+.-++-.+||
T Consensus       185 l~H~V~p~~~~~~RiSIsFN  204 (216)
T 2rg4_A          185 LRHEVPMNMAEEDRISVSFN  204 (216)
T ss_dssp             SCEEECCCCSSSCEEEEEEE
T ss_pred             CEEeccCCCCCCCEEEEEEE
Confidence            99998643332223333444

>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16

Probab=92.13  E-value=3.1  Score=31.76  Aligned_cols=89  Identities=15%  Similarity=0.058  Sum_probs=61.7

Q ss_pred             CCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecE-EEEEEEeCCCeEEEEEEc----CCC
Q 042644           49 KFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGV-VIAGFVDTNRQVFQVMLK----AGE  123 (205)
Q Consensus        49 ~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~-~~v~~~~~~~~~~~~~l~----~GD  123 (205)
                      +- ||+.++.......+-+ .-.+....-|.+|.....|.--++.|+.+-..|. +++.+..+++.....+|.    +|+
T Consensus        20 PE-GG~yrEt~Rs~~~~~R-~~~TaIYfLL~~g~~S~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~~~~~LG~d~~~Ge   97 (154)
T 1znp_A           20 PE-GGFYHQTFRDKAGGER-GHSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEGE   97 (154)
T ss_dssp             TT-SSEEEEEEECSSSTTT-CSCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTTE
T ss_pred             CC-CccEEEEEeCCCCCCC-cceeEEEEEecCCCCCcceeccCCCEEEEeECCCCEEEEEEcCCCcEEEEEeCCCcccCc
Confidence            44 8888887766432222 2345566667777765555533589999999998 777788777765566664    465


Q ss_pred             --EEEeCCCCeeEEEecC
Q 042644          124 --VCVFPRGLLHFGFNVG  139 (205)
Q Consensus       124 --v~~vP~G~~H~~~N~g  139 (205)
                        -++||+|.+...+..|
T Consensus        98 ~pQ~vVP~G~WqaA~~~g  115 (154)
T 1znp_A           98 RPQVIVPANCWQSAESLG  115 (154)
T ss_dssp             ESEEEECTTCEEEEEESS
T ss_pred             ccEEEEcCCEEEEeeECC
Confidence              4899999998887654

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=91.78  E-value=0.78  Score=38.54  Aligned_cols=77  Identities=23%  Similarity=0.329  Sum_probs=49.7

Q ss_pred             ceEEEEEEEcCCc---ccCCccCCCCCeEEEEEe----cEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644           70 GLSVARTDLDVDG---MVVPHTHPRASEMLFVFK----GVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus        70 gis~~~~~l~pgg---~~~pH~Hp~a~Ei~yVl~----G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~  142 (205)
                      .+-+..-.+.|||   ..|||.|-+..|..|--+    |.+ +.++.+.++.....++-||++++|...+|..  .|.+.
T Consensus       179 qllmg~evltpgg~WSSyPpHkHDrr~EeyyYF~l~~~gfv-~q~~g~p~Etrhi~V~n~daVlvP~wh~h~~--~G~~~  255 (282)
T 1xru_A          179 QLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACV-FHMMGQPQETRHIVMHNEQAVISPSWSIHSG--VGTKA  255 (282)
T ss_dssp             SCEEEEEEECTTCCEESCSEEECTTEEEEEEEESCCTTCCE-EEEEEETTEEEEEEECSSEEEEECTTCEEEE--EESSC
T ss_pred             hEEEEEEEEeCCCCcCCCCCccCCCCceEEEEEEeCCCCEE-EEEeCCCCCeeEEEEECCCEEEeCCCCCCCC--CCccc
Confidence            4556667788887   359999976666666443    433 3333333444456789999999996667764  46666


Q ss_pred             EEEEEEE
Q 042644          143 ATVFSVL  149 (205)
Q Consensus       143 a~~l~~~  149 (205)
                      -.+|.+.
T Consensus       256 Y~ylwvM  262 (282)
T 1xru_A          256 YTFIWGM  262 (282)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            5444433

>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A*

Probab=91.55  E-value=3.3  Score=33.08  Aligned_cols=109  Identities=17%  Similarity=0.120  Sum_probs=68.6

Q ss_pred             eEEEEEEEcCCc-ccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcC----CC--EEEeCCCCeeEEEec-CCcc
Q 042644           71 LSVARTDLDVDG-MVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKA----GE--VCVFPRGLLHFGFNV-GYEF  142 (205)
Q Consensus        71 is~~~~~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~----GD--v~~vP~G~~H~~~N~-g~~~  142 (205)
                      .+....-|.+++ ....|.- ++.|+.+-..|.....++.++++....+|.+    |+  -++||+|.+...+.. +.+-
T Consensus        79 ~TaIYfLL~~~~~~S~wHRv-~sdEiW~~h~G~p~~~li~~dg~~~~~~LG~dl~~Ge~pQ~vVPaG~WqaA~~~~~~~~  157 (203)
T 1xe7_A           79 STLIYYLLTPDSPIGKFHKN-INRIIHILQRGKGQYVLVYPDGQVKSFKVGFDYKNGEVSQWVVPGGVFKASFLLPNEEF  157 (203)
T ss_dssp             CEEEEEEEBTTBCEEEEEEE-SSCEEEEEEEECEEEEEECTTSCEEEEEESSCGGGTCBSEEEECTTCEEEEEECCCTTT
T ss_pred             eeEEEEEEcCCCCcccceee-CCCEEEEEEcCCccEEEEcCCCCEEEEEeCCCcccCcccEEEEcCCEEEEeEecCCCCc
Confidence            466666688886 5777766 7899999999976666777888766677754    54  589999999887654 2222


Q ss_pred             --EEEEEEEeCCCCceeeccccccCCCCCCHH-HHHhhcCCCHHHHHHhh
Q 042644          143 --ATVFSVLNSQNPGVVSISDAAFSDFDTIDD-LVRKFIPFLCWTIRVSE  189 (205)
Q Consensus       143 --a~~l~~~~s~~pg~~~~~~~~f~~~~~~~e-vLa~af~v~~~~v~~l~  189 (205)
                        ..++...  -.||+..-...++     +.+ .|.+.|.  ++.++.|+
T Consensus       158 ~~~tLVgCt--VaPGFdF~dFel~-----~~~~~L~~~~P--~~~~~~l~  198 (203)
T 1xe7_A          158 DNGFLISEV--VVPGFDFEDHTFL-----KGEDELKHLVG--PEKAAELA  198 (203)
T ss_dssp             TTCEEEEEE--ESSCCCGGGEEEC-----CHHHHHHHHHC--HHHHHHTG
T ss_pred             ccceEEEEE--ecCCccchhcEec-----CCcHHHHHHCC--HHHHHHHH
Confidence              1333322  2355433222222     344 5555554  66776654

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=91.54  E-value=1.2  Score=37.80  Aligned_cols=57  Identities=18%  Similarity=0.297  Sum_probs=41.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHF  134 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~  134 (205)
                      -+++.++++..+...   ...+...++.|++|++.+..   +++  ...|++||.+++|++.-.+
T Consensus       250 ~F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~l~~---~~~--~~~l~~G~~~~vpa~~~~~  306 (319)
T 1qwr_A          250 YFSVYKWDINGEAEM---AQDESFLICSVIEGSGLLKY---EDK--TCPLKKGDHFILPAQMPDF  306 (319)
T ss_dssp             SCEEEEEEEEEEEEE---CCCSSCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCCCE
T ss_pred             EEEEEEEEECCceEE---ccCCccEEEEEEcCeEEEEE---CCE--EEEEcCCcEEEEeCCCceE
Confidence            467778887644322   22256789999999999864   344  5789999999999986433

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=91.49  E-value=0.81  Score=40.79  Aligned_cols=77  Identities=16%  Similarity=0.065  Sum_probs=48.1

Q ss_pred             ceEEEEEEEc--CCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec---CCccEE
Q 042644           70 GLSVARTDLD--VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV---GYEFAT  144 (205)
Q Consensus        70 gis~~~~~l~--pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~---g~~~a~  144 (205)
                      .+++.++++.  ++.....-.+ ....++.|++|++++..  .+++.....|++||+++||++..-.+.+.   +.+.+.
T Consensus       356 eF~v~~~~~~~~~~~~~~~~~~-~~~~illv~~G~g~i~~--~~~~~~~~~l~~G~~~fvpa~~~~~i~g~~~~~~~~~~  432 (440)
T 1pmi_A          356 EFSVLQTIFDKSKGGKQVIEGL-NGPSIVIATNGKGTIQI--TGDDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFT  432 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEECCC-SSCEEEEEEESEEEEEE--TTCGGGCEEEETTCEEEECTTCCEEEEECSSCCSSCCE
T ss_pred             eEEEEEEEecCCCCceeEEecC-CCcEEEEEEeCeEEEEe--CCcccceEEeccCCEEEEeCCCcEEEEEecccCCCcEE
Confidence            5788888887  3422211112 46789999999999864  12210015899999999999954444544   144555


Q ss_pred             EEEEE
Q 042644          145 VFSVL  149 (205)
Q Consensus       145 ~l~~~  149 (205)
                      ++.++
T Consensus       433 ~~~a~  437 (440)
T 1pmi_A          433 TYRAF  437 (440)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=91.25  E-value=0.92  Score=32.54  Aligned_cols=57  Identities=18%  Similarity=-0.030  Sum_probs=43.1

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644           75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN  137 (205)
Q Consensus        75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N  137 (205)
                      .-.+.||.   .+....+.|+.-|++|++++.+-   |...+.++++|+.|.||++.-.-++-
T Consensus        40 lGVm~PGe---Y~F~T~~~E~MevvsG~l~V~Lp---G~~eW~~~~aGesF~VpanssF~lkv   96 (106)
T 3eo6_A           40 LTLLHPGV---YTLSSEVAETIRVLSGMAYYHAE---GANDVQELHAGDSMVIPANQSYRLEV   96 (106)
T ss_dssp             EEEECSEE---EEECCSSCEEEEEEEEEEEEECT---TCSSCEEEETTCEEEECSSSCEEEEE
T ss_pred             EEEEeeeE---EEecCCCcEEEEEEEeEEEEECC---CCccCEEECCCCEEEECCCCcEEEEE
Confidence            33456663   34555688999999999998873   32237999999999999998777654

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=90.95  E-value=2.8  Score=35.20  Aligned_cols=101  Identities=11%  Similarity=0.049  Sum_probs=59.8

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ...+.+..+.|++|+.......+...-++||++|++.+.   .+..  ...+.++.+++...|..-.+.+.+.++++++.
T Consensus       166 ~~~~~~~~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v~---g~~~--~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LL  240 (290)
T 1j1l_A          166 RTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIG---PDDA--QQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL  240 (290)
T ss_dssp             SSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEES---CTTS--CEEECTTEEEEECSCSEEEEECCSSSCEEEEE
T ss_pred             cCCcEEEEEEECCCCEEEeecCCCCEEEEEEEeCeEEEC---Cccc--ceeccCceEEEecCCCEEEEEEcCCCCcEEEE
Confidence            446888999999999663333333456889999999863   1111  14566777777777766556554456777665


Q ss_pred             EEeCC--CCceeeccccccCCCCCCHHHHHhhc
Q 042644          148 VLNSQ--NPGVVSISDAAFSDFDTIDDLVRKFI  178 (205)
Q Consensus       148 ~~~s~--~pg~~~~~~~~f~~~~~~~evLa~af  178 (205)
                      +-..+  .|-.+.. .-+.    -+.|-|++|+
T Consensus       241 l~G~Pl~epi~~~g-pFVm----nt~eeI~qA~  268 (290)
T 1j1l_A          241 IAGEPLREPVIQHG-PFVM----NTNEEISQAI  268 (290)
T ss_dssp             EEECCCCSCCEEET-TEEE----SSHHHHHHHH
T ss_pred             EEcccCCCCEEecC-Ceee----CCHHHHHHHH
Confidence            54333  2222221 1122    2567777665

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=90.70  E-value=1.1  Score=32.73  Aligned_cols=62  Identities=18%  Similarity=0.190  Sum_probs=43.1

Q ss_pred             CcccCCccCCCCC--eEEEEEecEEEEEEEeCCCe---EEEEEEcCCCEEEeCCCCeeEEEecCCccEEE
Q 042644           81 DGMVVPHTHPRAS--EMLFVFKGVVIAGFVDTNRQ---VFQVMLKAGEVCVFPRGLLHFGFNVGYEFATV  145 (205)
Q Consensus        81 gg~~~pH~Hp~a~--Ei~yVl~G~~~v~~~~~~~~---~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~  145 (205)
                      -++...|.- .+-  ..+-|++|++.+...++++.   .....+.+|+.-++|+..+|.+.-  ++++.+
T Consensus        26 ~~l~~~HnT-K~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~--sdD~~f   92 (119)
T 3dl3_A           26 EALLTHHNT-AVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIEL--SDDAQF   92 (119)
T ss_dssp             HHHHSSBCC-CTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEE--CTTCEE
T ss_pred             HHHHhccCC-CCcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEE--CCCeEE
Confidence            345555644 332  45579999999887664432   235688999999999999999994  344444

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=90.02  E-value=0.8  Score=35.26  Aligned_cols=125  Identities=7%  Similarity=0.049  Sum_probs=77.0

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEeC-----CC--CeeEEEecCCccEEE
Q 042644           74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVFP-----RG--LLHFGFNVGYEFATV  145 (205)
Q Consensus        74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~vP-----~G--~~H~~~N~g~~~a~~  145 (205)
                      ....+++|..+-..-. ....+++|++|.+.+...+++|+ .....+.+||++.+.     .+  .......  .+++.+
T Consensus        27 ~~~~~~~g~~i~~~G~-~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a--~~~~~~  103 (220)
T 3dv8_A           27 ITQHVKKGTIIHNGNM-DCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEA--EKDTDL  103 (220)
T ss_dssp             EEEEECTTCEEEEGGG-CCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCCCEEEE--SSCEEE
T ss_pred             ceEEeCCCCEEECCCC-CcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCceEEEE--eeeeEE
Confidence            3566777775533222 34689999999999998887765 345678999996321     22  2223333  345555


Q ss_pred             EEEEe-------CCCCceeec----------------------------cc------cccC--CCCCCHHHHHhhcCCCH
Q 042644          146 FSVLN-------SQNPGVVSI----------------------------SD------AAFS--DFDTIDDLVRKFIPFLC  182 (205)
Q Consensus       146 l~~~~-------s~~pg~~~~----------------------------~~------~~f~--~~~~~~evLa~af~v~~  182 (205)
                      +.+-.       ..+|.....                            +.      ...+  .-.++.+.||..+|+++
T Consensus       104 ~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr  183 (220)
T 3dv8_A          104 WIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHR  183 (220)
T ss_dssp             EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCH
T ss_pred             EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCH
Confidence            44321       123322110                            00      0111  01578999999999999


Q ss_pred             HHHHHhhhcCCCcccEEEe
Q 042644          183 WTIRVSEMSHFQDNKLKIM  201 (205)
Q Consensus       183 ~~v~~l~~~~~~~~~i~i~  201 (205)
                      +++.++.+.-.+.|-|.+-
T Consensus       184 ~tvsR~l~~L~~~g~I~~~  202 (220)
T 3dv8_A          184 EVITRMLRYFQVEGLVKLS  202 (220)
T ss_dssp             HHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHCCCEEeC
Confidence            9999999988888877654

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=89.99  E-value=0.82  Score=40.14  Aligned_cols=57  Identities=18%  Similarity=0.288  Sum_probs=41.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHF  134 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~  134 (205)
                      -+++.++++.++...  ..+ +...++.|++|++++..   +++  ...|++||.++||++..-+
T Consensus       323 ~F~v~~~~l~~~~~~--~~~-~~~~il~v~~G~~~l~~---~~~--~~~l~~G~~~fvpa~~~~~  379 (394)
T 2wfp_A          323 DFAFSLHDLALQETS--IGQ-HSAAILFCVEGEAVLRK---DEQ--RLVLKPGESAFIGADESPV  379 (394)
T ss_dssp             SCEEEEEECCSSCEE--ECC-SSCEEEEEEEEEEEEEE---TTE--EEEECTTCEEEECGGGCCE
T ss_pred             EEEEEEEEEcCCeEE--ecC-CCcEEEEEEeceEEEEE---CCe--EEEEccCcEEEEeCCCceE
Confidence            578888888755322  133 55699999999998653   333  5799999999999985333

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=89.34  E-value=1.5  Score=36.54  Aligned_cols=73  Identities=15%  Similarity=0.158  Sum_probs=48.3

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCC-C----CeeEEEecCCcc
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR-G----LLHFGFNVGYEF  142 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~-G----~~H~~~N~g~~~  142 (205)
                      ...+.+..+.|++|+.......+...-++||++|++.+.     +.  ...+.+||.+++.. |    ..-.+.+.  ++
T Consensus       164 ~~~~~~~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v~-----g~--~~~l~~~d~~~~~~~~~~~~~~l~l~a~--~~  234 (277)
T 2p17_A          164 IVPVTMVEMIVEPGTTVVQDLPGHYNGFLYILEGSGVFG-----AD--NIEGKAGQALFFSRHNRGEETELNVTAR--EK  234 (277)
T ss_dssp             SSCEEEEEEEECTTCEEEEEEETTCEEEEEEEESEEEET-----TT--TEEEETTEEEEECCCCTTCEEEEEEEES--SS
T ss_pred             CCCCEEEEEEECCCCEEEeccCCCCEEEEEEEeCeEEEC-----CC--ceEeCCCcEEEEcCCCCCccceEEEEeC--CC
Confidence            447889999999999663333223346899999998762     31  14699999999985 6    43344443  35


Q ss_pred             EEEEEEE
Q 042644          143 ATVFSVL  149 (205)
Q Consensus       143 a~~l~~~  149 (205)
                      ++++.+-
T Consensus       235 a~~Ll~~  241 (277)
T 2p17_A          235 LRLLLYA  241 (277)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            6655443

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=89.11  E-value=1.6  Score=35.69  Aligned_cols=69  Identities=16%  Similarity=-0.013  Sum_probs=47.7

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ..+.+..+.+++|+....-..++..-++||++|++.+     ++    ..+.+||.+++..+..-.+.+  .++++++.+
T Consensus       158 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~v~~G~v~v-----~g----~~l~~gd~~~~~~~~~l~l~a--~~~a~~Ll~  226 (242)
T 1tq5_A          158 QDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTI-----NG----VKASTSDGLAIWDEQAISIHA--DSDSEVLLF  226 (242)
T ss_dssp             SSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEE-----TT----EEEETTCEEEEESCSCEEEEE--SSSEEEEEE
T ss_pred             CCCEEEEEEECCCCEEEeecCCCcEEEEEEccCcEEE-----CC----EEeCCCCEEEECCCCeEEEEe--CCCCEEEEE
Confidence            4678888999999866333333445678999999986     23    369999999997765445544  345655543

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=86.91  E-value=4.2  Score=33.45  Aligned_cols=72  Identities=11%  Similarity=-0.063  Sum_probs=47.7

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ..+.+..+.+++|.........+. -++||++|++.+.  ..++  ....|.+||.+++-.+..-.+.+  .++++++.
T Consensus       180 ~~~~~~~~~L~~g~~~~~~~~~~~-~~l~v~~G~v~v~--g~~~--~~~~l~~gd~~~l~~~~~l~l~a--~~~a~~LL  251 (256)
T 2vec_A          180 QQVWLHHIVLDKGESANFQLHGPR-AYLQSIHGKFHAL--THHE--EKAALTCGDGAFIRDEANITLVA--DSPLRALL  251 (256)
T ss_dssp             SSCEEEEEEECTTCEEEEECSSSE-EEEEEEESCEEEE--ETTE--EEEEECTTCEEEEESCSEEEEEE--SSSEEEEE
T ss_pred             CCcEEEEEEECCCCEEEEecCCCe-EEEEEEECEEEEC--Cccc--cceEECCCCEEEECCCCeEEEEe--CCCCEEEE
Confidence            467888899999986644333333 6889999999874  2111  13679999999997665444444  24555543

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=86.87  E-value=3.4  Score=34.71  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=40.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCC-eEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRAS-EMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFG  135 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~-Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~  135 (205)
                      -+++.++++......   .. +.. .++.|++| +++..   +++  ...+++||.+++|++.-.+.
T Consensus       229 ~F~v~~~~~~~~~~~---~~-~~~~~il~v~~G-~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~  285 (300)
T 1zx5_A          229 NFGLEVVDVTGTAEI---KT-GGVMNILYAAEG-YFILR---GKE--TADLHRGYSCLVPASTDSFT  285 (300)
T ss_dssp             SEEEEEEEEEEEEEE---EC-CSBCEEEEEEES-CEEEE---SSS--EEEECTTCEEEECTTCCEEE
T ss_pred             eEEEEEEEECCceEE---ec-CCceEEEEEccc-EEEEe---CCe--EEEEccceEEEEeCCCceEE
Confidence            477888887643222   23 566 89999999 88764   344  46899999999999875444

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}

Probab=85.56  E-value=0.89  Score=39.84  Aligned_cols=28  Identities=25%  Similarity=0.283  Sum_probs=24.4

Q ss_pred             EEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644          115 FQVMLKAGEVCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus       115 ~~~~l~~GDv~~vP~G~~H~~~N~g~~~  142 (205)
                      ++..-++||.++||+|.+|...|..+.-
T Consensus       293 ~~~~Q~~GeavfiPaG~~HQV~Nl~~~i  320 (392)
T 2ypd_A          293 CTLIQFLGDAIVLPAGALHQVQNFHSCI  320 (392)
T ss_dssp             EEEEEETTCEEEECTTCEEEEEESSEEE
T ss_pred             EEEEEcCCCEEEecCCCHHHHhcccchh
Confidence            5678899999999999999999987543

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=83.93  E-value=2.8  Score=29.66  Aligned_cols=53  Identities=9%  Similarity=0.070  Sum_probs=37.5

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEe
Q 042644           74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVF  127 (205)
Q Consensus        74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~v  127 (205)
                      ....+++|..+-..-- .+..+++|++|.+.+...+++|+ .....+.+||++-.
T Consensus        29 ~~~~~~~g~~i~~~g~-~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~   82 (149)
T 2pqq_A           29 SEVTLARGDTLFHEGD-PGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGE   82 (149)
T ss_dssp             EEEEECTTCEEECTTS-EECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESG
T ss_pred             eEEEeCCCCEEECCCC-CCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEech
Confidence            4567788876533222 34679999999999988876665 44678899998743

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=83.50  E-value=15  Score=30.51  Aligned_cols=70  Identities=7%  Similarity=-0.030  Sum_probs=47.2

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEE-EEEecEEEEEEEeCCCeEEEEEEcC--------CCEEEeCCCCeeEEEecCCc
Q 042644           71 LSVARTDLDVDGMVVPHTHPRASEML-FVFKGVVIAGFVDTNRQVFQVMLKA--------GEVCVFPRGLLHFGFNVGYE  141 (205)
Q Consensus        71 is~~~~~l~pgg~~~pH~Hp~a~Ei~-yVl~G~~~v~~~~~~~~~~~~~l~~--------GDv~~vP~G~~H~~~N~g~~  141 (205)
                      +++..+.|++|.......- + .|+. +.+.|.+.+.+   +++.+...-+.        .|.+++|+|.--.+...+  
T Consensus        29 ~~f~~~~L~~Ge~~~~~~~-~-~E~~iv~l~G~~~V~~---~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~--  101 (270)
T 2qjv_A           29 VGFDVWQLXAGESITLPSD-E-RERCLVLVAGLASVXA---ADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAET--  101 (270)
T ss_dssp             CEEEEEEECTTCEEEECCS-S-EEEEEEEEESCEEEEE---TTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESS--
T ss_pred             eEEEEEEecCCCEEEecCC-C-cEEEEEEecceEEEEE---CCEEEeccccccccccCCCCcEEEECCCCEEEEEecC--
Confidence            6788889999998777655 3 4665 56799999886   45532221233        599999999966666544  


Q ss_pred             cEEEEE
Q 042644          142 FATVFS  147 (205)
Q Consensus       142 ~a~~l~  147 (205)
                      ++++..
T Consensus       102 ~~~~~v  107 (270)
T 2qjv_A          102 DLELAV  107 (270)
T ss_dssp             SEEEEE
T ss_pred             CceEEE
Confidence            455543

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=82.27  E-value=4.9  Score=30.09  Aligned_cols=52  Identities=12%  Similarity=0.008  Sum_probs=37.1

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEE
Q 042644           74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCV  126 (205)
Q Consensus        74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~  126 (205)
                      ....+++|..+-.- ...+..+++|++|.+.+...+++|+ .....+.+||++-
T Consensus        31 ~~~~~~~g~~l~~~-G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~g   83 (194)
T 3dn7_A           31 QLKKVRKKETLLKT-GEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLS   83 (194)
T ss_dssp             EEEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEC
T ss_pred             EEEEEcCCCEEECC-CCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEe
Confidence            35567777754222 1234689999999999998877775 3456789999986

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=81.99  E-value=2.9  Score=29.37  Aligned_cols=53  Identities=8%  Similarity=0.188  Sum_probs=32.9

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EE---EEEEcCCCEEE
Q 042644           73 VARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VF---QVMLKAGEVCV  126 (205)
Q Consensus        73 ~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~---~~~l~~GDv~~  126 (205)
                      +....+.+|..+-.- ...+..+++|++|.+.+...+++++ ..   ...+.+||++-
T Consensus        29 ~~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG   85 (142)
T 3mdp_A           29 SEEKSFPTGSVIFKE-NSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG   85 (142)
T ss_dssp             EEEEEECTTCEEECT-TSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred             hcEEecCCCCEEEeC-CCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence            345667787754322 2235689999999999887665554 33   56789999884

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=81.89  E-value=6.3  Score=29.71  Aligned_cols=52  Identities=13%  Similarity=0.072  Sum_probs=37.8

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEE
Q 042644           73 VARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVC  125 (205)
Q Consensus        73 ~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~  125 (205)
                      +....+.+|..+-.-=- .+..+++|++|.+.+...+++|+ .....+.+||++
T Consensus        62 ~~~~~~~~ge~i~~~G~-~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~f  114 (187)
T 3gyd_A           62 MQCYAAPRDCQLLTEGD-PGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAII  114 (187)
T ss_dssp             CEEEEECTTCEEECTTS-CCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEE
T ss_pred             cEEEEeCCCCEEEcCCC-CCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCee
Confidence            44566788875533222 35689999999999998887775 345688999987

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=81.46  E-value=5.5  Score=29.98  Aligned_cols=124  Identities=10%  Similarity=0.073  Sum_probs=75.3

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEeCC---C------CeeEEEecCCccEE
Q 042644           75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVFPR---G------LLHFGFNVGYEFAT  144 (205)
Q Consensus        75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~vP~---G------~~H~~~N~g~~~a~  144 (205)
                      ...+++|..+-.- ......+++|++|.+.+...+++|+ .....+.+||++-...   +      ..+....  .+++.
T Consensus        15 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A--~~~~~   91 (207)
T 2oz6_A           15 RRRYTAKSTIIYA-GDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRA--KVECE   91 (207)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEE--SSCEE
T ss_pred             eEEECCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCcceEEEE--CCcEE
Confidence            4567777755322 2234679999999999998877665 4557889999985432   1      2223333  34444


Q ss_pred             EEEEEe-------CCCCceeec----------------------------ccccc---CC-----------CCCCHHHHH
Q 042644          145 VFSVLN-------SQNPGVVSI----------------------------SDAAF---SD-----------FDTIDDLVR  175 (205)
Q Consensus       145 ~l~~~~-------s~~pg~~~~----------------------------~~~~f---~~-----------~~~~~evLa  175 (205)
                      ++.+-.       ..+|.....                            +..+.   ..           -.++.+.||
T Consensus        92 v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA  171 (207)
T 2oz6_A           92 VAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIG  171 (207)
T ss_dssp             EEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHH
T ss_pred             EEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHH
Confidence            443221       123322110                            00010   00           037889999


Q ss_pred             hhcCCCHHHHHHhhhcCCCcccEEEe
Q 042644          176 KFIPFLCWTIRVSEMSHFQDNKLKIM  201 (205)
Q Consensus       176 ~af~v~~~~v~~l~~~~~~~~~i~i~  201 (205)
                      ..+|++++++.++.+.-.+.|-|.+-
T Consensus       172 ~~lg~sr~tvsR~l~~l~~~g~I~~~  197 (207)
T 2oz6_A          172 RIVGCSREMVGRVLKSLEEQGLVHVK  197 (207)
T ss_dssp             HHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHhCCCHHHHHHHHHHHHHCCCEEec
Confidence            99999999999999888888877654

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=81.28  E-value=6.1  Score=28.65  Aligned_cols=51  Identities=4%  Similarity=-0.073  Sum_probs=35.5

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEE
Q 042644           73 VARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVC  125 (205)
Q Consensus        73 ~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~  125 (205)
                      +....+.+|..+-.- ...+..+++|++|.+.+.. +.+|+ .....+.+||++
T Consensus        61 ~~~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~f  112 (161)
T 3idb_B           61 MFEKLVKEGEHVIDQ-GDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSF  112 (161)
T ss_dssp             CEEEEECTTCEEECT-TSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCEE
T ss_pred             cceeEeCCCCEEEeC-CCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCEe
Confidence            345677888755332 2245689999999999987 54554 445678999976

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=80.94  E-value=5.2  Score=30.39  Aligned_cols=126  Identities=11%  Similarity=-0.021  Sum_probs=77.6

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEeC-----CCCeeEEEecCCccEEEEE
Q 042644           74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVFP-----RGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~vP-----~G~~H~~~N~g~~~a~~l~  147 (205)
                      ....+++|..+-..-. ....+++|++|.+.+...+++|+ .....+.+||++-..     .-..+....  .+++.++.
T Consensus        23 ~~~~~~~g~~i~~~g~-~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a--~~~~~v~~   99 (216)
T 4ev0_A           23 QRRLYPQGKPIFYQGD-LGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVA--VEDTELLA   99 (216)
T ss_dssp             EEEEECTTCEEECTTC-BCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCCBCSSEEEE--SSSEEEEE
T ss_pred             eEEEeCCCCEEEeCCC-CCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCCCcceEEEE--cCCEEEEE
Confidence            3556777775533222 35689999999999998877765 455788999988431     112233333  34454443


Q ss_pred             EEe-------CCCCceeec----------------------------ccccc-----C---CCCCCHHHHHhhcCCCHHH
Q 042644          148 VLN-------SQNPGVVSI----------------------------SDAAF-----S---DFDTIDDLVRKFIPFLCWT  184 (205)
Q Consensus       148 ~~~-------s~~pg~~~~----------------------------~~~~f-----~---~~~~~~evLa~af~v~~~~  184 (205)
                      +-.       ..+|.....                            +..+.     +   ...++.+.||..+|+++++
T Consensus       100 i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~t  179 (216)
T 4ev0_A          100 LFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRET  179 (216)
T ss_dssp             EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHH
T ss_pred             EcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHH
Confidence            321       123322110                            01110     0   0147899999999999999


Q ss_pred             HHHhhhcCCCcccEEEee
Q 042644          185 IRVSEMSHFQDNKLKIMK  202 (205)
Q Consensus       185 v~~l~~~~~~~~~i~i~~  202 (205)
                      +.++.+.-.+.|-|.+-+
T Consensus       180 vsR~l~~l~~~g~I~~~~  197 (216)
T 4ev0_A          180 VSRVLHALAEEGVVRLGP  197 (216)
T ss_dssp             HHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHHHHCCCEEecC
Confidence            999999888888776543

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=80.57  E-value=5.5  Score=30.81  Aligned_cols=119  Identities=8%  Similarity=-0.029  Sum_probs=71.9

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEeC-----CCCeeEEEecCCccEEEEE
Q 042644           74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVFP-----RGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~vP-----~G~~H~~~N~g~~~a~~l~  147 (205)
                      ....+.+|..+-.--. ....+++|++|.+.+...+++|+ .....+.+||++-..     .-.......  .+++.++.
T Consensus        35 ~~~~~~~g~~i~~~G~-~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a--~~~~~v~~  111 (237)
T 3fx3_A           35 VWRSYDRGETLFLQEE-KAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEA--VTPCEVMH  111 (237)
T ss_dssp             EEEEECTTCEEECTTS-CCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHHHTCCCSSEEEE--SSSEEEEE
T ss_pred             EEEEECCCCEEEcCCC-ccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHhcCCCCCceEEE--CCceEEEE
Confidence            4566777775533222 35689999999999998877765 445688999988432     112223333  24454443


Q ss_pred             EEe-------CCCCceeec----------------------------ccc------------ccCCCCCCHHHHHhhcCC
Q 042644          148 VLN-------SQNPGVVSI----------------------------SDA------------AFSDFDTIDDLVRKFIPF  180 (205)
Q Consensus       148 ~~~-------s~~pg~~~~----------------------------~~~------------~f~~~~~~~evLa~af~v  180 (205)
                      +-.       ..+|.....                            +..            .+.. .++.+.||...|+
T Consensus       112 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l-~~t~~~iA~~lg~  190 (237)
T 3fx3_A          112 IPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTL-PYDKMLIAGRLGM  190 (237)
T ss_dssp             EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-----EEEC-CSCTHHHHHHTTC
T ss_pred             EcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCeEEEe-cCCHHHHHHHhCC
Confidence            221       122322110                            000            1111 3558999999999


Q ss_pred             CHHHHHHhhhcCCCcc
Q 042644          181 LCWTIRVSEMSHFQDN  196 (205)
Q Consensus       181 ~~~~v~~l~~~~~~~~  196 (205)
                      +++++.++.+.-.+.|
T Consensus       191 sr~tvsR~l~~L~~~g  206 (237)
T 3fx3_A          191 KPESLSRAFSRLKAAG  206 (237)
T ss_dssp             CHHHHHHHHHHHGGGT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            9999999998777666

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=80.50  E-value=1.2  Score=37.51  Aligned_cols=44  Identities=23%  Similarity=0.323  Sum_probs=33.7

Q ss_pred             CeEEEEEe-cEEEEEEEeCC-----------Ce------EEEEEEcCCCEEEeCCCCeeEEE
Q 042644           93 SEMLFVFK-GVVIAGFVDTN-----------RQ------VFQVMLKAGEVCVFPRGLLHFGF  136 (205)
Q Consensus        93 ~Ei~yVl~-G~~~v~~~~~~-----------~~------~~~~~l~~GDv~~vP~G~~H~~~  136 (205)
                      +|+.|+++ .++.+|+-...           +.      +....|++||.+++|+|.+|..-
T Consensus       118 pE~~y~L~~~~~~~Gf~~~~~~~~~~~~l~~~~~~~~~lLn~v~l~pGd~~~ipaGt~HA~~  179 (300)
T 1zx5_A          118 ESAWLVFNKGKAYAGFKEDVKIEELEEKLKEEDFDFKTLLNTFETTPYDTFVIRPGIPHAGE  179 (300)
T ss_dssp             CEEEEECSSCEEEEEESSCCCHHHHHHHHTSSSCCGGGGEEEEECCTTCEEEECTTCCEEEE
T ss_pred             cEEEEEcccHHHhhCCCCCCCHHHHHHHHHhCchhHHHHhceeECCCCCEEEcCCCCceEcC
Confidence            69999997 55666653211           22      45789999999999999999984

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=80.12  E-value=6.6  Score=29.60  Aligned_cols=125  Identities=10%  Similarity=0.082  Sum_probs=77.1

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEeCC----C--CeeEEEecCCccEEEEE
Q 042644           75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVFPR----G--LLHFGFNVGYEFATVFS  147 (205)
Q Consensus        75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~vP~----G--~~H~~~N~g~~~a~~l~  147 (205)
                      ...+++|..+-..-- ....+++|++|.+.+...+++|+ .....+.+||++-...    +  .......  .+++.++.
T Consensus        21 ~~~~~~g~~i~~~g~-~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a--~~~~~v~~   97 (210)
T 3ryp_A           21 IHKYPSKSTLIHQGE-KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRA--KTACEVAE   97 (210)
T ss_dssp             EEEECTTCEEECTTS-BCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCSSEEEE--SSCEEEEE
T ss_pred             EEEeCCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCCCceEEEEE--CCcEEEEE
Confidence            456777775433222 35689999999999998877765 3456789999985332    1  2223333  34555444


Q ss_pred             EEe-------CCCCceeec----------------------------ccccc---CC-----------CCCCHHHHHhhc
Q 042644          148 VLN-------SQNPGVVSI----------------------------SDAAF---SD-----------FDTIDDLVRKFI  178 (205)
Q Consensus       148 ~~~-------s~~pg~~~~----------------------------~~~~f---~~-----------~~~~~evLa~af  178 (205)
                      +-.       ..+|.....                            +..+.   ..           -.++.+.||...
T Consensus        98 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~l  177 (210)
T 3ryp_A           98 ISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIV  177 (210)
T ss_dssp             EEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHH
T ss_pred             EcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHh
Confidence            321       123432210                            00000   00           046889999999


Q ss_pred             CCCHHHHHHhhhcCCCcccEEEee
Q 042644          179 PFLCWTIRVSEMSHFQDNKLKIMK  202 (205)
Q Consensus       179 ~v~~~~v~~l~~~~~~~~~i~i~~  202 (205)
                      |++++++.++.+.-.+.|-|.+-+
T Consensus       178 g~sr~tvsR~l~~L~~~g~I~~~~  201 (210)
T 3ryp_A          178 GCSRETVGRILKMLEDQNLISAHG  201 (210)
T ss_dssp             TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred             CCcHHHHHHHHHHHHHCCcEEeCC
Confidence            999999999999888888776644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	2e-46
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	1e-25
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	2e-24
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	6e-14
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	4e-24
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	1e-22
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	3e-20
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	2e-17
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	5e-13
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	1e-11
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	2e-11
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	1e-08
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	1e-06
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	4e-04
d1lr5a_	160	b.82.1.2 (A:) Auxin binding protein {Maize (Zea ma	1e-06
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	1e-05
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	0.002
d1vr3a1	179	b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse	1e-04
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	2e-04
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	0.004
d1o4ta_	115	b.82.1.9 (A:) Hypothetical protein TM1287 {Thermot	8e-04
d1x82a_	190	b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {	0.001

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  150 bits (379), Expect = 2e-46
 Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 4/176 (2%)

Query: 2   DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAA 61
           D LQD C  D   K  + +NG  CK           S+KL  AG+T     S++T +  A
Sbjct: 4   DPLQDFCVADLDGK-AVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVA 62

Query: 62  DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV---DTNRQVFQVM 118
           ++PG NTLG+S+ R D    G   PH HPRA+E+  V KG ++ G +   D+  +++  +
Sbjct: 63  EWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRV 122

Query: 119 LKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 174
           ++AGE  V PRGL+HF FNVG   A +    NSQNPG+V +    F     I   V
Sbjct: 123 VRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPV 178

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 95.8 bits (238), Expect = 1e-25
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 2/126 (1%)

Query: 46  DTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIA 105
           D       S+T  T+ DFP L+ L LS     L  + M VPH +  A+ +++   G  + 
Sbjct: 17  DIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALI 76

Query: 106 GFVDTN-RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATV-FSVLNSQNPGVVSISDAA 163
             V+ N  +VF   L+ G V + P+  +    +    F  V F   ++   G ++ +++ 
Sbjct: 77  QVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSL 136

Query: 164 FSDFDT 169
            +    
Sbjct: 137 LNALPE 142

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 96.6 bits (240), Expect = 2e-24
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 5/128 (3%)

Query: 49  KFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV 108
           +     + +  + +F    T+  + A   ++   M   H HP   E  +   G       
Sbjct: 230 ESEGGKVYIADSTNFKVSKTI--ASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVF 287

Query: 109 DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFD 168
            ++        +AG+V   P  + H+  N+G E      +    +   VS++        
Sbjct: 288 ASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAM--- 344

Query: 169 TIDDLVRK 176
             +  V+ 
Sbjct: 345 LPETFVQA 352

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 67.0 bits (163), Expect = 6e-14
 Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 4/119 (3%)

Query: 58  VTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQV 117
           VT  + P      L+     L    +   H H  A E  ++  G      VD   + F  
Sbjct: 61  VTVRELPISE--NLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRSFID 117

Query: 118 MLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRK 176
            +  G++  FP GL H    +  E A    V +  +    S          T  +++  
Sbjct: 118 DVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAA 175

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 91.6 bits (227), Expect = 4e-24
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 53  SSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR 112
             ++ + +   P L   GLS     L  +G+  PH +  A+ +++V +G      V+   
Sbjct: 29  GRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQG 88

Query: 113 Q-VFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDT 169
             VF   L+ G++ V P+  +            V  V  + +  V S     F    +
Sbjct: 89  NAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYV--VFKTHHNAVSSYIKDVFRAIPS 144

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 81.6 bits (201), Expect = 3e-20
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 15/155 (9%)

Query: 34  SDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRAS 93
           S+ K   LR            L  +T    P L  L + ++  D++   + +PH + +A 
Sbjct: 5   SEDKPFNLRSRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAI 64

Query: 94  EMLFVFKGVVIAGFVDTN--------------RQVFQVMLKAGEVCVFPRGLLHFGFNVG 139
            +L + +G      V                  + ++  L   ++ V P G         
Sbjct: 65  VVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATS 124

Query: 140 YEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 174
                 F + N++N     ++ +  +    I   V
Sbjct: 125 DLNFFAFGI-NAENNQRNFLAGSKDNVISQIPSQV 158

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 73.8 bits (181), Expect = 2e-17
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 66  LNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-------VFQVM 118
            N+L + ++  +++   + VPH + +A  +L V +G      V             ++  
Sbjct: 15  DNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAE 74

Query: 119 LKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNP 154
           L   +V V P               T F +  + N 
Sbjct: 75  LSKDDVFVIPAAYPVAIKATSNVNFTGFGINANNNN 110

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 62.2 bits (151), Expect = 5e-13
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 34  SDFKSTKLRDAGD---TDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHP 90
           + F++      G      +F   S  L        L      + +     + +++PH H 
Sbjct: 12  NSFQTLFENQNGRIRLLQRFNKRSPQL------ENLRDY--RIVQFQSKPNTILLPH-HA 62

Query: 91  RASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEVCVFPRGLLHFGFNVGYE--FATVFS 147
            A  +LFV  G  I   V+ + R  +   L  G+    P G  ++  N         ++ 
Sbjct: 63  DADFLLFVLSGRAILTLVNNDDRDSYN--LHPGDAQRIPAGTTYYLVNPHDHQNLKMIWL 120

Query: 148 VLNSQNPGVVSISDAAF 164
            +    PG       + 
Sbjct: 121 AIPVNKPGRYDDFFLSS 137

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 58.8 bits (142), Expect = 1e-11
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 5/106 (4%)

Query: 62  DFPGLNTLG-LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLK 120
           D   L  L    V       + +++PH H  +  ++ V +G  I   V+         L 
Sbjct: 31  DTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVN-PDGRDTYKLD 88

Query: 121 AGEVCVFPRGLLHFGFNVGYE--FATVFSVLNSQNPGVVSISDAAF 164
            G+      G   +  N         +   +  + PG V     + 
Sbjct: 89  QGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSS 134

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 63  FPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKA 121
              L      +   +   + +++PH H  A  ++ +  G  I   V+ + R  +   L++
Sbjct: 34  LQNLR--DYRILEFNSKPNTLLLPH-HADADYLIVILNGTAILTLVNNDDRDSYN--LQS 88

Query: 122 GEVCVFPRGLLHFGFNVGYE--FATVFSVLNSQNPG 155
           G+    P G  ++  N   +     +   +    PG
Sbjct: 89  GDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPG 124

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 10/98 (10%)

Query: 67  NTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVM----LKA 121
           N     +       + +++P     A  +L V  G  I   V  + R+ +  +       
Sbjct: 38  NLEDYRLVEFRSKPETLLLPQ-QADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIF 96

Query: 122 GEVCVFPRGLLHFGFNVG----YEFATVFSVLNSQNPG 155
            +    P G + +  N           +   +N+    
Sbjct: 97  SDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIH 134

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 6/85 (7%)

Query: 57  LVTAADFPGLNTLGLSVARTDLDVDGMV--VPHTHPRASEMLFVFKGVVIAGFVDTNRQV 114
            VT            ++  T+      +  +PH H +  E  +  KG         N   
Sbjct: 36  YVTGPSSGYA----FTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQ 91

Query: 115 FQVMLKAGEVCVFPRGLLHFGFNVG 139
              +L +G+    PR + H      
Sbjct: 92  QTRVLSSGDYGSVPRNVTHTFQIQD 116

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 82  GMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYE 141
            + VP      +    V +G V+      +    +  L +G+V   P G+    ++    
Sbjct: 260 TVTVPTWSFPGACAFQVQEGRVV--VQIGDYAATE--LGSGDVAFIPGGVEFKYYSEA-Y 314

Query: 142 FATVFSVLNSQN 153
           F+ V  V +  +
Sbjct: 315 FSKVLFVSSGSD 326

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Length = 160

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 7/113 (6%)

Query: 56  TLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN---- 111
             V  A   G+  + + +        G   P       E+  V KG        ++    
Sbjct: 28  ITVAGALNHGMKEVEVWLQTIS---PGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYP 84

Query: 112 RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 164
            Q  ++          P    H  +N          V+ S+ P  + + D   
Sbjct: 85  GQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWS 137

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 71  LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRG 130
             V  ++      +V H H   +E  +  +G      + T+ Q  Q  L  G+    P  
Sbjct: 214 FIVVSSEGPKGDRIVDHYHEYHTETFYCLEG---QMTMWTDGQEIQ--LNPGDFLHVPAN 268

Query: 131 LLHFGFNVGYEFATVFSVLN 150
            +H  + +   +  +  VL 
Sbjct: 269 TVH-SYRLDSHYTKMVGVLV 287

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 10/78 (12%), Positives = 18/78 (23%), Gaps = 9/78 (11%)

Query: 56  TLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVF 115
            +               +             H H    E + V  G +            
Sbjct: 31  VMANGRSTGD----LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGE----- 81

Query: 116 QVMLKAGEVCVFPRGLLH 133
           + +L +G+    P G  H
Sbjct: 82  RYLLISGDYANIPAGTPH 99

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 86  PHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLH 133
            H H    E+ ++ +G       D   +  ++ ++ G++   P G+ H
Sbjct: 87  EHLHLDE-EIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYH 133

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 86  PHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATV 145
            H H   S + F+ +G      VD  R      +  G+  + P+   H   N G E    
Sbjct: 69  SHRHN-QSALRFIVEGKGAFTAVDGER----TPMNEGDFILTPQWRWHDHGNPGDEPVIW 123

Query: 146 FSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPF 180
              L   +  +V+I    F++    +         
Sbjct: 124 LDGL---DLPLVNILGCGFAEDYPEEQQPVTRKEG 155

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 9/110 (8%)

Query: 39  TKLRDAGDTDKFP-YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLF 97
             L   GD D++  Y    +        + ++G  +    L              S +  
Sbjct: 191 HDLTRLGDADEWDGYKMRYVNPVTGGYPMPSMGAFLQL--LPKGFASRVARTT-DSTIYH 247

Query: 98  VFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147
           V +G   +G V    + F     A ++ V P                 FS
Sbjct: 248 VVEG---SGQVIIGNETFS--FSAKDIFVVPTWHGVSFQTTQDSVLFSFS 292

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Length = 115

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.5 bits (81), Expect = 8e-04
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 66  LNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVC 125
           ++      AR  L     V  H H    E+ ++  G  +      +  +       G+VC
Sbjct: 34  MHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKDVPIKA-----GDVC 88

Query: 126 VFPRGLLHFGFNVGYEFATVFSVL 149
               G  H   N G       +V+
Sbjct: 89  FTDSGESHSIENTGNTDLEFLAVI 112

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 190

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 14/89 (15%)

Query: 87  HTHPRASEMLFVFKG--VVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFAT 144
           H     +E+    KG   ++    + + +   +  + G V   P    H   N+G E   
Sbjct: 91  HAKLDRAEVYVALKGKGGMLLQTPEGDAKWISM--EPGTVVYVPPYWAHRTVNIGDEPFI 148

Query: 145 VFSVLNSQNPGVVSISDAAFSDFDTIDDL 173
             ++  +           A  D+ TI + 
Sbjct: 149 FLAIYPA----------DAGHDYGTIAEK 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	100.0
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	100.0
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	100.0
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	99.97
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.96
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.95
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.94
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	99.93
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.92
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.92
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.92
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	99.91
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	99.91
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.66
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.6
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.58
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.55
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.53
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.51
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	99.41
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.41
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.32
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.29
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.27
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.25
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.25
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.23
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.23
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.22
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	99.21
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.16
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.15
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.13
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	99.12
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.1
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.1
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	99.07
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	99.06
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.91
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.9
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.87
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.81
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.69
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	98.67
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	98.31
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	98.3
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	98.01
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.71
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	97.71
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	97.39
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.34
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	97.25
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	97.24
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	97.22
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	97.17
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	97.14
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	97.12
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	97.06
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	97.01
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	96.81
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	96.55
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	96.0
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	95.87
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	95.79
d1znpa1	140	Hypothetical protein Atu3615 {Agrobacterium tumefa	95.32
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	94.42
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	93.74
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	93.29
d1yuda1	158	Hypothetical protein SO0799 {Shewanella oneidensis	93.29
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	92.58
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	92.51
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	92.03
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	91.65
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	90.56
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	90.14
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	90.09
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	88.74
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	88.4
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	88.38
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	88.28
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	86.88
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	85.46
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	83.38
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	83.33
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	83.15
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	81.64

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=2.4e-58  Score=375.10  Aligned_cols=189  Identities=35%  Similarity=0.551  Sum_probs=179.6

Q ss_pred             CCCcceeccCCCCCceeeeCCcCCCCCCCCCCCCceeecccCCCCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcC
Q 042644            2 DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDV   80 (205)
Q Consensus         2 ~~~~d~cv~~~~~~~~~~~~g~~ck~~~~~~~~df~~~~~~~~~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~p   80 (205)
                      ||||||||||++++. +++||||||+++.++.+||+|++|+.++++ |+. |++++.+++.+||+|+++|+|++|++|+|
T Consensus         4 ~~lqdfcvad~~~~~-~~~~g~~ck~~~~~~~~~f~~~~l~~~~~~~~~~-g~~vt~~~~~~fP~Ln~lglS~~rv~l~p   81 (201)
T d2et1a1           4 DPLQDFCVADLDGKA-VSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPN-GSAVTELDVAEWPGTNTLGVSMNRVDFAP   81 (201)
T ss_dssp             CCSSSCCCBCCCTTS-CCCSSCCBCCGGGCCSCTTCCCTTSSCCCCCSTT-SEEEEEESTTTCGGGTTSSCEEEEEEECT
T ss_pred             cccceeEeecCCCCc-cccCCcccCChhhccccceeecccccCCCccCCC-CcEEEEeehhcCccccccceeEEEEEECC
Confidence            799999999997753 899999999999999999999999999999 999 99999999999999999999999999999


Q ss_pred             CcccCCccCCCCCeEEEEEecEEEEEEEeC---CCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCcee
Q 042644           81 DGMVVPHTHPRASEMLFVFKGVVIAGFVDT---NRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVV  157 (205)
Q Consensus        81 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~---~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~  157 (205)
                      ||+++|||||+++|++||++|+++++++++   +++.+..+|++||+++||+|.+||++|.|+++++++++|++++|+.+
T Consensus        82 gg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f~s~~pg~~  161 (201)
T d2et1a1          82 GGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIV  161 (201)
T ss_dssp             TCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCCE
T ss_pred             CCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEEEEecCCCCcce
Confidence            999999999999999999999999999864   57889999999999999999999999999999999999999999999


Q ss_pred             eccccccC-CCCCCHHHHHhhcCCCHHHHHHhhhcC
Q 042644          158 SISDAAFS-DFDTIDDLVRKFIPFLCWTIRVSEMSH  192 (205)
Q Consensus       158 ~~~~~~f~-~~~~~~evLa~af~v~~~~v~~l~~~~  192 (205)
                      .++.++|+ .+++|+|||+++|+++++++++|+++.
T Consensus       162 ~~~~~~f~~~~~~p~eVLa~af~i~~~~v~kLks~f  197 (201)
T d2et1a1         162 FVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKF  197 (201)
T ss_dssp             EHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             ehhhhhhccCCCCCHHHHHHHhCCCHHHHHHHHhhc
Confidence            99999998 467999999999999999999998753

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=1.5e-34  Score=229.48  Aligned_cols=146  Identities=20%  Similarity=0.302  Sum_probs=132.6

Q ss_pred             CCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEEEEEEcCC
Q 042644           45 GDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLKAG  122 (205)
Q Consensus        45 ~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~l~~G  122 (205)
                      .++ ++. ||+++.+++.+||+|+++++++++++|+||++++|||||+|+|++||++|+++++++++++ +.++.+|++|
T Consensus        16 ~d~~~~~-gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~G   94 (174)
T d1fxza2          16 PDIYNPQ-AGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEG   94 (174)
T ss_dssp             CSEEETT-TEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETT
T ss_pred             CCcCcCC-CeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCC
Confidence            344 677 9999999999999999999999999999999999999999999999999999999999875 6778899999


Q ss_pred             CEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCC
Q 042644          123 EVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQ  194 (205)
Q Consensus       123 Dv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~  194 (205)
                      |+++||+|.+|+++|.+ +...++++++++++....++  .++|+  ++|+|+|+++|+++.+++++|++++++
T Consensus        95 dv~vvP~G~~h~~~n~~-~~~~~v~~~~~~~~~~~~lag~~s~l~--~~~~~vl~~af~v~~eei~~lk~~q~~  165 (174)
T d1fxza2          95 RVLIVPQNFVVAARSQS-DNFEYVSFKTNDTPMIGTLAGANSLLN--ALPEEVIQHTFNLKSQQARQIKNNNPF  165 (174)
T ss_dssp             CEEEECTTCEEEEEECS-TTEEEEEEESSSSCCEEESSSTTCTGG--GSCHHHHHHHHTCCHHHHHHHHHSCCC
T ss_pred             cEEEECCCCEEEEEeCC-CCeEEEEEEccCCCCcccccchhhhhh--cCCHHHHHHHHCcCHHHHHHHHhcCCc
Confidence            99999999999999964 67888888888888887775  46787  799999999999999999999988754

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=100.00  E-value=5.4e-34  Score=226.08  Aligned_cols=145  Identities=17%  Similarity=0.217  Sum_probs=129.9

Q ss_pred             CCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEEEEEEcCC
Q 042644           45 GDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLKAG  122 (205)
Q Consensus        45 ~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~l~~G  122 (205)
                      .|+ |+. ||+++.+++.+||.|+++|+|+++++|.||++.+|||||+|+|++||++|+++++++++++ +.++.+|++|
T Consensus        21 ~d~~n~~-gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~G   99 (173)
T d1od5a2          21 ADFYNPK-AGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRG   99 (173)
T ss_dssp             CSEEETT-TEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccCCC-CeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCC
Confidence            344 788 9999999999999999999999999999999999999999999999999999999999865 5778899999


Q ss_pred             CEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCC
Q 042644          123 EVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQ  194 (205)
Q Consensus       123 Dv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~  194 (205)
                      |+++||+|.+|++.| +++.+.+++++++.++....+. ++|+  ++|.++|+++|+++++++++|++++.+
T Consensus       100 dv~~iP~G~~h~~~n-~~~~~~~v~~~~~~~~~~~~~~-s~l~--~~p~evl~~af~v~~e~v~~lk~~~~~  167 (173)
T d1od5a2         100 QLLVVPQNFVVAEQG-GEQGLEYVVFKTHHNAVSSYIK-DVFR--AIPSEVLSNSYNLGQSQVRQLKYQGNS  167 (173)
T ss_dssp             CEEEECTTCEEEEEE-EEEEEEEEEEESSTTCCEEEHH-HHHH--HSCHHHHHHHHTCCHHHHHHHHHSSCS
T ss_pred             cEEEECCCCEEEEEc-CCCceEEEEeecCCchhhhhHH-HHHH--hCCHHHHHHHhCcCHHHHHHHHhcCCC
Confidence            999999999999987 5677888888887777766654 5776  799999999999999999999987643

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=6.7e-34  Score=227.77  Aligned_cols=162  Identities=15%  Similarity=0.121  Sum_probs=137.2

Q ss_pred             CCCCCCceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEe
Q 042644           30 RIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVD  109 (205)
Q Consensus        30 ~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~  109 (205)
                      +.+++|+.|+++.+.+.+... +|+++.+++.++|.|+++++++++++|+||++.+||||++|+|+.||++|++++++++
T Consensus         2 ~~~~~~~pfnl~~~~p~~~n~-~G~~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~   80 (185)
T d1uika2           2 TISSEDKPFNLRSRDPIYSNK-LGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVG   80 (185)
T ss_dssp             GGGCSSSCEETTSSCCSEESS-SEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEE
T ss_pred             ccccCCCccccccCCCceeCC-CCeEEEeChhhChhhhhcCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEc
Confidence            568899999998887777334 6699999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC--------------eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHH
Q 042644          110 TNR--------------QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDL  173 (205)
Q Consensus       110 ~~~--------------~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~ev  173 (205)
                      +++              +.+++.|++||+++||+|++||++|.++.+++++.+.+..+...+..+  .++|+  +||+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d~~~v~~~~~~~~~~~~f~ag~~~~vl~--~~~~ev  158 (185)
T d1uika2          81 IKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGINAENNQRNFLAGSKDNVIS--QIPSQV  158 (185)
T ss_dssp             C------------CBCCEEEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEETCTTCCEEESSSSSSBGGG--GSCHHH
T ss_pred             cCccchhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCCCccEEEEEEcCCCCcccccccccccccc--cCCHHH
Confidence            754              467889999999999999999999988866555444334444433332  46777  899999


Q ss_pred             HHhhcCCCHHHHHHhhhcCCC
Q 042644          174 VRKFIPFLCWTIRVSEMSHFQ  194 (205)
Q Consensus       174 La~af~v~~~~v~~l~~~~~~  194 (205)
                      |++||+++++++++|++++++
T Consensus       159 La~aF~v~~~~~~kl~~~q~e  179 (185)
T d1uika2         159 QELAFPGSAKDIENLIKSQSE  179 (185)
T ss_dssp             HHHHSSSCHHHHHHHHHHCCS
T ss_pred             HHHHhCCCHHHHHHHHhcCCc
Confidence            999999999999999998765

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=2.3e-28  Score=214.11  Aligned_cols=157  Identities=14%  Similarity=0.134  Sum_probs=141.1

Q ss_pred             CCCCCCCceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEE
Q 042644           29 DRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV  108 (205)
Q Consensus        29 ~~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~  108 (205)
                      ....+.-|.|+.+..++ .... ||++..+++.+||.++  ++++++++|+||++.+|||||+++|+.||++|++++++.
T Consensus       212 ~g~~~~~~~~~l~~q~P-~~~~-gG~~~~~d~~~fp~~~--~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~  287 (372)
T d1j58a_         212 NGEVPYPFTYRLLEQEP-IESE-GGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVF  287 (372)
T ss_dssp             TCCCSSCSEEEGGGSCC-EECS-SEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEE
T ss_pred             CCCCCCcceeeccccCC-cccC-CccEEEeccccCCccC--ceeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEE
Confidence            33445668888776665 5334 7899999999999998  689999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHHHHh
Q 042644          109 DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVS  188 (205)
Q Consensus       109 ~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~l  188 (205)
                      +++++.+++.+++||+++||+|..|+++|.|+++++++++|+++.++.+.+++++.   .+|.+||+++|+++.+++++|
T Consensus       288 ~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~vf~s~~~~~i~~~~~l~---~~P~~vv~~~~~~~~e~~~~l  364 (372)
T d1j58a_         288 ASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLA---MLPETFVQAHLDLGKDFTDVL  364 (372)
T ss_dssp             EETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEHHHHHH---TSCHHHHHHHHTCCHHHHTTC
T ss_pred             cCCCceEEEEecCCcEEEECCCCeEEEEECCCCCEEEEEEECCCCcceeeHHHHhh---hCCHHHHHHHhCcCHHHHHHH
Confidence            98888888999999999999999999999999999999999999999999888776   479999999999999999999


Q ss_pred             hhcC
Q 042644          189 EMSH  192 (205)
Q Consensus       189 ~~~~  192 (205)
                      ++..
T Consensus       365 ~~~k  368 (372)
T d1j58a_         365 SKEK  368 (372)
T ss_dssp             CSSC
T ss_pred             HhcC
Confidence            8754

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.95  E-value=2e-27  Score=186.15  Aligned_cols=138  Identities=16%  Similarity=0.097  Sum_probs=110.0

Q ss_pred             CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-------eEEEEEEc
Q 042644           48 DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-------QVFQVMLK  120 (205)
Q Consensus        48 ~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-------~~~~~~l~  120 (205)
                      |.+ | .++.++.      +++++++++++++||++..|||||+|+|++||++|+++++++++++       ++++.+|+
T Consensus         5 n~f-g-~~~~~~~------n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~   76 (162)
T d2phla2           5 NEF-G-NLTERTD------NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELS   76 (162)
T ss_dssp             ETT-E-EEEEEEE------TTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEE
T ss_pred             ccc-C-ceeecCC------CCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeec
Confidence            556 5 6776653      5679999999999999999999999999999999999999998765       35788999


Q ss_pred             CCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc------ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCC
Q 042644          121 AGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS------DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQ  194 (205)
Q Consensus       121 ~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~------~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~  194 (205)
                      +||+++||+|.+||+.|.++.++..+.+.+..+...+..+      .+++. +++|+|+|++||+++.+++++|..++++
T Consensus        77 ~Gdv~vvP~G~~~~~~n~~~~~~v~~~~~~~~~~~~flaG~~~sv~~~~~~-~~~~~evL~~aF~v~~eevekl~~~q~e  155 (162)
T d2phla2          77 KDDVFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGKTDNVISSIGR-ALDGKDVLGLTFSGSGDEVMKLINKQSG  155 (162)
T ss_dssp             TTCEEEECTTCCEEEEESSSEEEEEEEESCTTCCEEESSSSSSBHHHHHHT-STTHHHHHHHHSSSCHHHHHHHHTTCCC
T ss_pred             CCcEEEECCCCEEEEEeCCCceEEEEEecCCCCcceeecCccccchhhhcc-cCCCHHHHHHHhCCCHHHHHHHHhhCCc
Confidence            9999999999999999987766554443333343333221      12232 2799999999999999999999987654

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.94  E-value=6.4e-27  Score=185.81  Aligned_cols=144  Identities=17%  Similarity=0.198  Sum_probs=119.0

Q ss_pred             CeeEEEec--cCCCCCCCcc-ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644           52 YSSLTLVT--AADFPGLNTL-GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP  128 (205)
Q Consensus        52 g~~~~~~~--~~~~P~l~~~-gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP  128 (205)
                      +|+++.++  ..+.+.|.++ .+++.+++++||++..|| |++|+|++||++|++++++++++++ +++.|++||+++||
T Consensus        19 ~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph-~~~a~ev~yV~~G~g~v~~v~~~~~-~~~~l~~GDv~~iP   96 (178)
T d1dgwa_          19 HGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIKIQ   96 (178)
T ss_dssp             TEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEEEC
T ss_pred             CCcEEEecccCCcchhccCccceEEEEEEecCCcccccc-cCCCCEEEEEEEeEEEEEEecCCce-EEEEecCCCEEEEC
Confidence            67877665  5556678777 499999999999999999 5799999999999999999997554 68999999999999


Q ss_pred             CCCeeEEEecCC-ccEEEEEEEeCC-CCc---eeecc-----ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCcccE
Q 042644          129 RGLLHFGFNVGY-EFATVFSVLNSQ-NPG---VVSIS-----DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKL  198 (205)
Q Consensus       129 ~G~~H~~~N~g~-~~a~~l~~~~s~-~pg---~~~~~-----~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~~~i  198 (205)
                      +|.+||++|.++ +++.++++++.. .++   .+..+     .++|+  +++.++|++||+++++++++++.++++++.|
T Consensus        97 ~G~~h~~~N~~~~e~l~i~~~~~~~n~~~~~~~f~~~~~~~~~svl~--~~~~evL~~aF~v~~e~~~kl~~~~~~~g~I  174 (178)
T d1dgwa_          97 AGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLS--AFSKNFLEASYDSPYDEIEQTLLQEEQEGVI  174 (178)
T ss_dssp             TTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGG--GSCHHHHHHHHTSCHHHHHHHTTSCCSSSSE
T ss_pred             CCCeEEEEECCCCCCEEEEEEecCCCCCccccccccccccCcccHHH--hCCHHHHHHHhCCCHHHHHHHHhcccCCCcE
Confidence            999999999865 677777766533 233   22222     46777  8999999999999999999999998888875


Q ss_pred             E
Q 042644          199 K  199 (205)
Q Consensus       199 ~  199 (205)
                      .
T Consensus       175 v  175 (178)
T d1dgwa_         175 V  175 (178)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.93  E-value=6.9e-26  Score=187.40  Aligned_cols=147  Identities=18%  Similarity=0.267  Sum_probs=125.7

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-E----------------
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-V----------------  114 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~----------------  114 (205)
                      ||.+.. +..+.|.|.++|+++.|.+|.|+|++.||++ +++.++||++|++.++++.|++. .                
T Consensus        21 ~G~~E~-wd~~~~qlqcagV~~~r~~I~p~gL~lP~ys-~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~~~   98 (245)
T d1od5a1          21 GGLIET-WNSQHPELQCAGVTVSKRTLNRNGLHLPSYS-PYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQ   98 (245)
T ss_dssp             TEEEEE-CCTTSHHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECEEEEEECCTTCCCCEEECC-----------
T ss_pred             CCeEEe-CCCCCHHHhhcCceeEEEEEcCCcccccccc-CCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccccccc
Confidence            665555 4467799999999999999999999999985 99999999999999999987531 1                


Q ss_pred             --------EEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCC--------Cceeeccc-----------------
Q 042644          115 --------FQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQN--------PGVVSISD-----------------  161 (205)
Q Consensus       115 --------~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~--------pg~~~~~~-----------------  161 (205)
                              ....|++|||++||+|++||++|.|+++++++++++..|        +..|.++.                 
T Consensus        99 ~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~~~~~~~~~~~q~~~~  178 (245)
T d1od5a1          99 QQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQK  178 (245)
T ss_dssp             ----EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCSCTTTTC------
T ss_pred             cccccceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccCcccccCCcceeEEecCCcccccchhcccchhhh
Confidence                    135699999999999999999999999999999987554        44455543                 


Q ss_pred             ------------------cccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEee
Q 042644          162 ------------------AAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMK  202 (205)
Q Consensus       162 ------------------~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~~  202 (205)
                                        ++|+  +|+.++||+||+++.+++++|++..+++|.|+-++
T Consensus       179 ~~~~~~~~~~~~~~~~~~nif~--gF~~~~La~Af~v~~e~~~klq~~~~~rG~IVrv~  235 (245)
T d1od5a1         179 SHGGRKQGQHQQQEEEGGSVLS--GFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVE  235 (245)
T ss_dssp             ---------------CCCCTTT--TSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEECS
T ss_pred             hcccccccccccccccCCCeee--cCCHHHHHHHHCCCHHHHHHHhCcccCCCcEEEEc
Confidence                              7898  99999999999999999999999889999876554

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.92  E-value=3.1e-25  Score=174.76  Aligned_cols=134  Identities=17%  Similarity=0.231  Sum_probs=109.6

Q ss_pred             CeeEEEec--cCCCCCCCccc-eEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644           52 YSSLTLVT--AADFPGLNTLG-LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP  128 (205)
Q Consensus        52 g~~~~~~~--~~~~P~l~~~g-is~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP  128 (205)
                      +|+++.+.  ....|.|++++ ++++++++.||++.+|| |++|+|++||++|++++++++++++ .++.+++||+++||
T Consensus        22 ~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph-~~~a~ei~yV~~G~g~v~~v~~~~~-~~~~l~~GDv~~vP   99 (170)
T d1uija1          22 NGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDR-DSYNLHPGDAQRIP   99 (170)
T ss_dssp             SEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSCE-EEEEECTTEEEEEC
T ss_pred             CCcEEEEecccccchhhcchhheEEEEEEecCCcccccc-cCCCCEEEEEEEEEEEEEEEeCCCc-EEEEecCCcEEEEC
Confidence            66887665  35677888875 99999999999999999 5699999999999999999997655 58899999999999


Q ss_pred             CCCeeEEEecCCcc-EEEEEEE-eCCCCcee---ecc-----ccccCCCCCCHHHHHhhcCCCHHHHHHhh
Q 042644          129 RGLLHFGFNVGYEF-ATVFSVL-NSQNPGVV---SIS-----DAAFSDFDTIDDLVRKFIPFLCWTIRVSE  189 (205)
Q Consensus       129 ~G~~H~~~N~g~~~-a~~l~~~-~s~~pg~~---~~~-----~~~f~~~~~~~evLa~af~v~~~~v~~l~  189 (205)
                      +|.+||++|.++++ +.++... .+.+++.+   .++     .++|+  ++++|+|++||++++++++++.
T Consensus       100 ~G~~h~~~n~~~~~~l~iv~~~~~~n~~~~~~~f~~~~~~~~~svl~--~~~~evLa~aF~v~~e~i~kl~  168 (170)
T d1uija1         100 AGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQ--GFSHNILETSFHSEFEEINRVL  168 (170)
T ss_dssp             TTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGG--GSCHHHHHHHHTSCHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCcEEEEEecCCcCCCccccccccccCCCcccHhH--hCCHHHHHHHhCCCHHHHHHHh
Confidence            99999999998754 4444433 23444432   232     46787  8999999999999999999986

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.92  E-value=5.6e-25  Score=177.82  Aligned_cols=142  Identities=13%  Similarity=0.185  Sum_probs=110.2

Q ss_pred             CeeEEEeccCC--CCCCCcc-ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644           52 YSSLTLVTAAD--FPGLNTL-GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP  128 (205)
Q Consensus        52 g~~~~~~~~~~--~P~l~~~-gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP  128 (205)
                      +|++..++.-+  .+.|.++ +++++++++.||++..|||+ +|+|++||++|++++++++++++ .++.|++||+++||
T Consensus        18 ~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~-~a~ev~yV~~G~g~~~~v~~~~~-~~~~l~~GDv~~iP   95 (203)
T d1uika1          18 YGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHA-DADYLIVILNGTAILTLVNNDDR-DSYNLQSGDALRVP   95 (203)
T ss_dssp             SEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEECSSCE-EEEEEETTEEEEEC
T ss_pred             CCeEEEecccCccchhhccccceEEEEEEecCCCccccccC-CCcEEEEEEEEEEEEEEEeCCCe-EEEEecCCCEEEEC
Confidence            67888886533  2345544 78999999999999999965 99999999999999999997655 58999999999999


Q ss_pred             CCCeeEEEecCC-ccEEEEEEEeCCC----Cceeecc-----ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCccc
Q 042644          129 RGLLHFGFNVGY-EFATVFSVLNSQN----PGVVSIS-----DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNK  197 (205)
Q Consensus       129 ~G~~H~~~N~g~-~~a~~l~~~~s~~----pg~~~~~-----~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~~~  197 (205)
                      +|++||++|.++ +++.++++.+..+    .+.+.++     .++|+  +|+.++|++||+++++++++++.++++...
T Consensus        96 ~G~~~~~~N~~~~e~l~iv~~~~~~n~~~~~~~f~~~g~~~~~~vl~--gf~~~vL~~aF~v~~e~~~kl~~~q~~~~~  172 (203)
T d1uika1          96 AGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQ--GFSKNILEASYDTKFEEINKVLFGREEGQQ  172 (203)
T ss_dssp             TTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGG--GSCHHHHHHHHTSCHHHHHHHTTC------
T ss_pred             CCCeEEEEECCCCccEEEEEEecCCCCcccccccccccCccccchhH--hCCHHHHHHHhCCCHHHHHHHHhccccccc
Confidence            999999999886 5566655543222    2333433     36887  899999999999999999999988776543

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.5e-25  Score=196.13  Aligned_cols=135  Identities=19%  Similarity=0.131  Sum_probs=120.5

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL  131 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~  131 (205)
                      |||+++++..+||.++  ++++.++.|.||++++||||+++ |+.||++|++++++++++++.+...|++||+++||+|.
T Consensus        55 gg~~r~~~~~~lp~~~--~~a~~~~~L~pga~~~pH~H~~a-e~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~  131 (372)
T d1j58a_          55 GGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGL  131 (372)
T ss_dssp             TEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESSC-EEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTC
T ss_pred             CCeeEEeehhhChhhh--hhhheEEEECCCcCcCCcccCcc-cEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEECCCC
Confidence            8999999999999998  78999999999999999999865 99999999999999999988888899999999999999


Q ss_pred             eeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcC
Q 042644          132 LHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSH  192 (205)
Q Consensus       132 ~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~  192 (205)
                      +|+++|. +++++++.+|+++++......  ..+|.  ++|.++|+++|++++++++++.+.+
T Consensus       132 ~H~i~n~-~dg~e~l~vf~~~~~~~~~~f~~~~~~~--~~p~evLa~af~v~~~~~~~i~~~e  191 (372)
T d1j58a_         132 PHSIQAL-EEGAEFLLVFDDGSFSENSTFQLTDWLA--HTPKEVIAANFGVTKEEISNLPGKE  191 (372)
T ss_dssp             CEEEEEE-EEEEEEEEEESCTTCCGGGEEEHHHHHH--TSCHHHHHHHHTCCTGGGTTSCSSC
T ss_pred             EEEEEeC-CCCcEEEEEECCCCcccccceeeccccc--cCCHHHHHHhhCCCHHHHhhccccc
Confidence            9999996 577999999998877543322  24565  7999999999999999999987654

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.91  E-value=1.2e-24  Score=179.35  Aligned_cols=146  Identities=10%  Similarity=0.163  Sum_probs=121.1

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-------------------
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-------------------  112 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-------------------  112 (205)
                      ||.+. .+..+-+.|.++|+++.|.+|.|+++..||+. +++.++||++|+++++++.|++                   
T Consensus        21 ~G~~E-~~d~~~~qlqcagV~~~r~~I~p~gL~lP~y~-~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~~~~   98 (239)
T d1fxza1          21 GGLIE-TWNPNNKPFQCAGVALSRCTLNRNALRRPSYT-NGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRP   98 (239)
T ss_dssp             TEEEE-ECCTTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC----------------
T ss_pred             CceEE-ecCCCChhhhhccchhheeeeccCceecceec-CCCeEEEEEeCEEEEEEecCCChhhhccccccccccccccc
Confidence            66555 45566699999999999999999999999985 9999999999999999996542                   


Q ss_pred             ---eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCC--------Cceeeccc--------------------
Q 042644          113 ---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQN--------PGVVSISD--------------------  161 (205)
Q Consensus       113 ---~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~--------pg~~~~~~--------------------  161 (205)
                         +.....|++||+++||+|++||++|.|+++++++++++..+        +..|.++.                    
T Consensus        99 ~d~~qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~~~~e~~~~~~~~~~~~~~~  178 (239)
T d1fxza1          99 QDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQK  178 (239)
T ss_dssp             --CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHHHHC---------
T ss_pred             chhhhhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEeccccccccccccceeeeccCCccccccccccccccccccc
Confidence               11247999999999999999999999999999999987554        34455542                    


Q ss_pred             ------------cccCCCCCCHHHHHhhcCCCHHHHHHhhhcC--CCcccEEEe
Q 042644          162 ------------AAFSDFDTIDDLVRKFIPFLCWTIRVSEMSH--FQDNKLKIM  201 (205)
Q Consensus       162 ------------~~f~~~~~~~evLa~af~v~~~~v~~l~~~~--~~~~~i~i~  201 (205)
                                  ++|+  +|+.++||.||+++.+++++|++.+  +++|.|+-+
T Consensus       179 ~~~~~~~~~~~~ni~~--gFs~~~La~Afnv~~e~~~klq~~~~~~~rG~IVrv  230 (239)
T d1fxza1         179 GKHQQEEENEGGSILS--GFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTV  230 (239)
T ss_dssp             ----------CCCGGG--GSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEEC
T ss_pred             ccccccccccCCCccc--ccCHHHHHHHHCcCHHHHHHHhcccccccCCCEEEE
Confidence                        6898  9999999999999999999999887  556765543

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.91  E-value=3.6e-24  Score=172.72  Aligned_cols=145  Identities=12%  Similarity=0.091  Sum_probs=116.1

Q ss_pred             CeeEEEecc--CCCCCCCcc-ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEE-----EEEcCCC
Q 042644           52 YSSLTLVTA--ADFPGLNTL-GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQ-----VMLKAGE  123 (205)
Q Consensus        52 g~~~~~~~~--~~~P~l~~~-gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~-----~~l~~GD  123 (205)
                      +|++..+..  .+.+.|.++ ++++.++++.|+++..|||+ +|++++||++|++++++++++++...     ..+++||
T Consensus        20 ~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~~-nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~~GD   98 (200)
T d2phla1          20 YGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSD   98 (200)
T ss_dssp             TEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCS
T ss_pred             CccEEEeccccccchhhhcccceEEEEEEecCCceeeeecC-CCCEEEEEEeeeEEEEEEECCCCceeehhhccCccCCC
Confidence            678887754  455667665 68999999999999999976 89999999999999999999875321     2689999


Q ss_pred             EEEeCCCCeeEEEecC-CccEEEEEEEeCC---CCceeeccc-----cccCCCCCCHHHHHhhcCCCHHHHHHhhhcCC-
Q 042644          124 VCVFPRGLLHFGFNVG-YEFATVFSVLNSQ---NPGVVSISD-----AAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHF-  193 (205)
Q Consensus       124 v~~vP~G~~H~~~N~g-~~~a~~l~~~~s~---~pg~~~~~~-----~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~-  193 (205)
                      +++||+|.+||++|.+ +++++++.++++.   ++..+.++.     ++|+  +|+.++|++||+++.+++++|+.+.+ 
T Consensus        99 v~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~~~~~~f~lag~~~~~svl~--~f~~evLa~aF~v~~e~~~kl~~~~~~  176 (200)
T d2phla1          99 HQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQ--EFSKHILEASFNSKFEEINRVLFEEEG  176 (200)
T ss_dssp             EEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGG--GSCHHHHHHHHTSCHHHHHHHHTCSTT
T ss_pred             EEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccceeccccccccHhH--cCCHHHHHHHcCCCHHHHHHHHhcccc
Confidence            9999999999999987 4688888776433   344455543     6888  89999999999999999999976544 


Q ss_pred             -CcccEE
Q 042644          194 -QDNKLK  199 (205)
Q Consensus       194 -~~~~i~  199 (205)
                       +++.|.
T Consensus       177 q~~g~Iv  183 (200)
T d2phla1         177 QQEGVIV  183 (200)
T ss_dssp             CBSSSEE
T ss_pred             ccCCceE
Confidence             344443

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=5.8e-16  Score=113.29  Aligned_cols=80  Identities=25%  Similarity=0.284  Sum_probs=70.7

Q ss_pred             CCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEE
Q 042644           65 GLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFAT  144 (205)
Q Consensus        65 ~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~  144 (205)
                      .+.+....+.+++++||+..++|+|++..|++||++|++.+.+   +++  ...+++||++++|+|.+|+++|.|+++++
T Consensus        33 ~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~g~~H~~~N~g~~~~~  107 (115)
T d1o4ta_          33 AMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK--DVPIKAGDVCFTDSGESHSIENTGNTDLE  107 (115)
T ss_dssp             TTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCEEEEECCSSSCEE
T ss_pred             ccCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEE---cCe--eEEeeccEEEEECCCCeEEEEECCCCCEE
Confidence            4455567788899999999999999888899999999999876   455  68999999999999999999999999999


Q ss_pred             EEEEE
Q 042644          145 VFSVL  149 (205)
Q Consensus       145 ~l~~~  149 (205)
                      ++++.
T Consensus       108 ~l~I~  112 (115)
T d1o4ta_         108 FLAVI  112 (115)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98864

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=3.2e-15  Score=106.81  Aligned_cols=77  Identities=17%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .++.+..+.++||+..++|+|++..|++||++|++.+.+   +++  ...+++||++++|+|..|++.|.|+++++++++
T Consensus        26 ~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v  100 (105)
T d1v70a_          26 ERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE--EALLAPGMAAFAPAGAPHGVRNESASPALLLVV  100 (105)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             CCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE---eee--EEEecceEEEEeCCCCEEEeEECCCCCEEEEEE
Confidence            367888999999999999999988899999999999876   455  689999999999999999999999999999987


Q ss_pred             Ee
Q 042644          149 LN  150 (205)
Q Consensus       149 ~~  150 (205)
                      +.
T Consensus       101 ~~  102 (105)
T d1v70a_         101 TA  102 (105)
T ss_dssp             EE
T ss_pred             EC
Confidence            75

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.58  E-value=1.7e-14  Score=111.37  Aligned_cols=103  Identities=17%  Similarity=0.094  Sum_probs=81.7

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC----CeEEEEEEcCCCEEEe
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN----RQVFQVMLKAGEVCVF  127 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~----~~~~~~~l~~GDv~~v  127 (205)
                      |............+++  .+.+.+.+++||+..++|+| +..|++||++|++.+.+.+.+    ++..++.+++||++++
T Consensus        24 g~~~~~~~~~~~~g~~--~i~v~~~~l~PG~~~~~H~H-~~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~~~i  100 (160)
T d1lr5a_          24 GLSHITVAGALNHGMK--EVEVWLQTISPGQRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSI  100 (160)
T ss_dssp             TEEEEEEECHHHHCCS--SEEEEEEEECTTCBCCEEEE-SSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEE
T ss_pred             CceEEEeecccCCCcc--EEEEEEEEECCCccccceec-cccEEEEEEeeeEEEEECCccccccccceEEEecCCCEEEe
Confidence            5555544444444555  68999999999999999999 578999999999999875532    1235789999999999


Q ss_pred             CCCCeeEEEecCC-ccEEEEEEEeCCCCcee
Q 042644          128 PRGLLHFGFNVGY-EFATVFSVLNSQNPGVV  157 (205)
Q Consensus       128 P~G~~H~~~N~g~-~~a~~l~~~~s~~pg~~  157 (205)
                      |+|.+|.+.|.|+ ++++++++++..-...+
T Consensus       101 P~~~~H~~~N~g~~E~l~~l~i~~~~p~~~~  131 (160)
T d1lr5a_         101 PVNDPHQVWNSDEHEDLQVLVIISRPPAKIF  131 (160)
T ss_dssp             CTTCCEEEECCCSSSCEEEEEEEESSSCCEE
T ss_pred             CCCCcEEEEECCCCCCEEEEEEECCCCceEE
Confidence            9999999999996 89999988875544444

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.55  E-value=1.2e-14  Score=105.34  Aligned_cols=81  Identities=16%  Similarity=0.178  Sum_probs=69.4

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      ..+.+.++.++||...++|+|+ ..|++||++|++.+.+   +++ ....+++||++++|+|..|+++|.|++++.++++
T Consensus        24 ~~~~v~~~~l~pG~~~p~H~H~-~~e~~~Vl~G~~~~~v---~~~-e~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v   98 (108)
T d2b8ma1          24 EHVQINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTL---EDQ-EPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVV   98 (108)
T ss_dssp             SSCEEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEE---TTS-CCEEEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             CCEEEEEEEECCCCcChhhccc-ccEEEEEEeeeEEEEE---ecc-cEEEeecceEeeccCCceEEEEcCCCCcEEEEEE
Confidence            3688999999999999999995 7899999999999987   232 1468999999999999999999999999998876


Q ss_pred             EeCCCCc
Q 042644          149 LNSQNPG  155 (205)
Q Consensus       149 ~~s~~pg  155 (205)
                      . ++.|.
T Consensus        99 ~-~P~p~  104 (108)
T d2b8ma1          99 K-APHPK  104 (108)
T ss_dssp             E-CSCGG
T ss_pred             E-CCCCc
Confidence            4 45543

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.53  E-value=3.2e-14  Score=101.27  Aligned_cols=79  Identities=23%  Similarity=0.145  Sum_probs=67.7

Q ss_pred             CCCCccceEEEEEEEcCCccc--CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCc
Q 042644           64 PGLNTLGLSVARTDLDVDGMV--VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYE  141 (205)
Q Consensus        64 P~l~~~gis~~~~~l~pgg~~--~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~  141 (205)
                      |.....++.+.+++++||+..  ++|+| ...|++||++|++++.+   +++  .++|++||.+.+|++..|++.|.|++
T Consensus        15 p~~~~~~~e~~~~~l~pg~~~~~~~H~h-~~~E~~~Vl~G~~~~~~---~~~--~~~l~~GD~~~~~~~~~H~~~n~~~~   88 (99)
T d1y9qa2          15 PYAADTGLEIFEITLLDHHQQMSSPHAL-GVIEYIHVLEGIMKVFF---DEQ--WHELQQGEHIRFFSDQPHGYAAVTEK   88 (99)
T ss_dssp             EEETTTTEEEEEEEECTTCEEEECCCST-TCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEEECSSSEEEEESSSC
T ss_pred             cCCCcCCEEEEEEEEeCCcEeccccccC-CcEEEEEEEcCceEEEe---cce--EEEecCCCEEEECCCCeEEEEeCCcc
Confidence            444555899999999999855  77888 67899999999999987   455  79999999999999999999999999


Q ss_pred             cEEEEEE
Q 042644          142 FATVFSV  148 (205)
Q Consensus       142 ~a~~l~~  148 (205)
                      ++.++.+
T Consensus        89 ~~~~~vi   95 (99)
T d1y9qa2          89 AVFQNIV   95 (99)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEE
Confidence            9865554

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=3.1e-14  Score=103.63  Aligned_cols=77  Identities=14%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .++.+..++++||+..++|+|+ ..|++||++|++.+.+   +++  .+.+++||++++|+|..|++.|.|++++++|++
T Consensus        34 ~~~~~~~~~i~pG~~~~~H~H~-~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~i  107 (114)
T d1vj2a_          34 PNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLK---EQG--EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCL  107 (114)
T ss_dssp             SSEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEEC---SSC--EEEEETTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CceEEEEEEECCCCCCCceECC-CcEEEEEEEceeEEEE---eee--eeEEecCeEEEEcCCCeEEEEeCCCCCEEEEEE
Confidence            3588889999999999999995 5799999999999875   455  699999999999999999999999999999998


Q ss_pred             EeC
Q 042644          149 LNS  151 (205)
Q Consensus       149 ~~s  151 (205)
                      +..
T Consensus       108 ip~  110 (114)
T d1vj2a_         108 IPK  110 (114)
T ss_dssp             EEG
T ss_pred             ECC
Confidence            753

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.41  E-value=2.2e-12  Score=102.14  Aligned_cols=85  Identities=19%  Similarity=0.146  Sum_probs=72.4

Q ss_pred             ccceEEEEEEEcCCcccC------CccCC--CCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC
Q 042644           68 TLGLSVARTDLDVDGMVV------PHTHP--RASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG  139 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~------pH~Hp--~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g  139 (205)
                      .-++.+....+.||....      .|+|+  +..|++||++|++.+.+.+.++......+++||+++||+|..|.+.|.|
T Consensus        64 ~~~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~G  143 (190)
T d1x82a_          64 EGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIG  143 (190)
T ss_dssp             TTCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECS
T ss_pred             CCCeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECC
Confidence            336888899999997543      47775  4579999999999999887666556789999999999999999999999


Q ss_pred             CccEEEEEEEeCC
Q 042644          140 YEFATVFSVLNSQ  152 (205)
Q Consensus       140 ~~~a~~l~~~~s~  152 (205)
                      ++++++++++...
T Consensus       144 de~L~~l~v~~~~  156 (190)
T d1x82a_         144 DEPFIFLAIYPAD  156 (190)
T ss_dssp             SSCEEEEEEEETT
T ss_pred             CCCEEEEEEECCC
Confidence            9999999998654

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=2.4e-12  Score=96.58  Aligned_cols=82  Identities=18%  Similarity=0.213  Sum_probs=71.1

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      .+++.+++++||+..++|+|+. .|++||++|++++...  +++  ...+++||++++|+|..||..|.+++++..|++.
T Consensus        34 ~~~~~~vtf~PG~~~~~H~H~~-~q~~~Vl~G~~~~~~~--g~~--~~~~~~Gd~v~ippg~~H~~~a~~~~~~~~lai~  108 (134)
T d2f4pa1          34 NTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQER--GKP--ARILKKGDVVEIPPNVVHWHGAAPDEELVHIGIS  108 (134)
T ss_dssp             SCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEET--TSC--CEEEETTCEEEECTTCCEEEEEBTTBCEEEEEEE
T ss_pred             eeEEEEEEECCCCcCccccCCC-CEEEEEEeCEEEEEEC--Ccc--eEEEcCCCeEEECCCCceECccCCCCcEEEEEEE
Confidence            5899999999999999999975 7999999999988762  333  4799999999999999999999999999999987


Q ss_pred             eCCCCce
Q 042644          150 NSQNPGV  156 (205)
Q Consensus       150 ~s~~pg~  156 (205)
                      ...+.+.
T Consensus       109 ~~~~~~~  115 (134)
T d2f4pa1         109 TQVHLGP  115 (134)
T ss_dssp             CCGGGCC
T ss_pred             ecCCCCc
Confidence            6655443

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.32  E-value=5e-12  Score=91.44  Aligned_cols=72  Identities=18%  Similarity=0.296  Sum_probs=61.4

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATV  145 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~  145 (205)
                      ..++.+..+.++||...++|+|+ ..|++||++|++.+.+   +++  ...+++||++++|+|..|.++|.++..+.+
T Consensus        34 ~~~~~i~~~~~~~G~~~~~H~h~-~~~~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~a~~~~~~l~  105 (112)
T d1yhfa1          34 RQDLGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITI---DQE--TYRVAEGQTIVMPAGIPHALYAVEAFQMLL  105 (112)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTSCEEEEESSCEEEEE
T ss_pred             CCCcEEEEEEECCCCCcceEECC-CCEEEEEEeCEEEEEE---ccE--EEEecCCEEEEcCCCCeEEeEECCCcEEEE
Confidence            34678888999999999999997 4899999999999886   455  689999999999999999999976544433

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.29  E-value=8.7e-12  Score=106.81  Aligned_cols=84  Identities=18%  Similarity=0.159  Sum_probs=71.2

Q ss_pred             ceEEEEEEEcCCcc--cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           70 GLSVARTDLDVDGM--VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        70 gis~~~~~l~pgg~--~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+++.+..++||+.  .+||||.+..|++||++|++++.+.+.++......+++||++++|+|.+|.+.|.++ +..++.
T Consensus        45 ~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H~~~n~~~-~~~~l~  123 (348)
T d1juha_          45 AFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP-DTEMTG  123 (348)
T ss_dssp             SCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECST-TEEEEE
T ss_pred             eEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeEeeEeCCC-CcEEEE
Confidence            48999999999985  578999888999999999999998876544457899999999999999999999976 567777


Q ss_pred             EEeCCCC
Q 042644          148 VLNSQNP  154 (205)
Q Consensus       148 ~~~s~~p  154 (205)
                      +++....
T Consensus       124 v~~pg~~  130 (348)
T d1juha_         124 VIVPGGF  130 (348)
T ss_dssp             EEESSCT
T ss_pred             EECCCcH
Confidence            7765543

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.27  E-value=3.4e-11  Score=98.51  Aligned_cols=83  Identities=8%  Similarity=0.082  Sum_probs=70.6

Q ss_pred             CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccE
Q 042644           64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA  143 (205)
Q Consensus        64 P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a  143 (205)
                      |.-....+.+..++++||+..+.|.|....|++||++|++.+.+   +++  .+.+++||++++|++.+|+++|.|++++
T Consensus       158 p~~~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i---~~~--~~~v~~GD~i~~~~~~~H~~~n~g~~~~  232 (245)
T d1sfna_         158 PDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EEN--YYPVTAGDIIWMGAHCPQWYGALGRNWS  232 (245)
T ss_dssp             CCCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEESSSCE
T ss_pred             CcccccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE---CCE--EEEecCCCEEEECCCCCEeeEeCCCCCE
Confidence            33344468999999999999988764477899999999999876   455  7999999999999999999999999999


Q ss_pred             EEEEEEeC
Q 042644          144 TVFSVLNS  151 (205)
Q Consensus       144 ~~l~~~~s  151 (205)
                      ++|...+-
T Consensus       233 ~~l~~k~~  240 (245)
T d1sfna_         233 KYLLYKDM  240 (245)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecC
Confidence            98876653

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.25  E-value=4.7e-11  Score=97.86  Aligned_cols=83  Identities=7%  Similarity=0.067  Sum_probs=68.4

Q ss_pred             CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC-Cc
Q 042644           63 FPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG-YE  141 (205)
Q Consensus        63 ~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g-~~  141 (205)
                      +|.-....+.+..+.++||+..+.|+|....|++||++|++.+.+   +++  ++.+++||++++|++.+|+.+|.| ++
T Consensus       160 ~p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~---~~~--~~~~~~GD~i~~~~~~pH~~~n~G~~~  234 (250)
T d1sefa_         160 LPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DNE--WYPVEKGDYIFMSAYVPQAAYAVGREE  234 (250)
T ss_dssp             SCSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEECSSS
T ss_pred             cCccccccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEE---CCE--EEEecCCCEEEECCCCCEEeEcCCCCC
Confidence            344455579999999999999886444477899999999999886   455  799999999999999999999999 57


Q ss_pred             cEEEEEEEe
Q 042644          142 FATVFSVLN  150 (205)
Q Consensus       142 ~a~~l~~~~  150 (205)
                      +++++..-+
T Consensus       235 ~~~~l~~k~  243 (250)
T d1sefa_         235 PLMYVYSKD  243 (250)
T ss_dssp             CEEEEEEEE
T ss_pred             cEEEEEEec
Confidence            777765443

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=5.6e-12  Score=106.26  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=68.8

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      ++.+....|+||+..++|+| ...|++||++|++.+..++  ++  ...+++||++++|+|.+|...|.|++++.++.++
T Consensus        53 ~l~~~~~~l~PG~~~~~H~H-~~~e~~~vl~G~g~~t~~~--~~--~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~~  127 (308)
T d2d40a1          53 TLYAGLQLIMPGEVAPSHRH-NQSALRFIVEGKGAFTAVD--GE--RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGL  127 (308)
T ss_dssp             SCEEEEEEECTTCEEEEEEE-SSCEEEEEEECSSCEEEET--TE--EEECCTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             cceeeeEEECCCCccccccC-chhheEEEEEeeEEEEEec--CE--EEEecCCCEEEeCCCceEEeEECCCCCEEEEEEe
Confidence            57888889999999999999 5689999999999876664  44  6789999999999999999999999999999988


Q ss_pred             eC
Q 042644          150 NS  151 (205)
Q Consensus       150 ~s  151 (205)
                      +.
T Consensus       128 d~  129 (308)
T d2d40a1         128 DL  129 (308)
T ss_dssp             CH
T ss_pred             cc
Confidence            63

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.23  E-value=4.3e-11  Score=101.39  Aligned_cols=78  Identities=17%  Similarity=0.225  Sum_probs=68.3

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      .+++..+++.||+..++|+|+...|++||++|++++.+   +++  +..+++||++++|+|..|++.|.+ +++.++.++
T Consensus       213 ~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v---~~~--~~~~~~Gd~~~vP~g~~H~~~~~~-~~~~~l~~~  286 (330)
T d1y3ta1         213 QFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DGQ--EIQLNPGDFLHVPANTVHSYRLDS-HYTKMVGVL  286 (330)
T ss_dssp             SCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECS-SSEEEEEEE
T ss_pred             cEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEE---CCE--EEEeCCCCEEEECcCCcEEeEeCC-CCeEEEEEE
Confidence            47888899999999999999888899999999999976   455  689999999999999999999975 578888887


Q ss_pred             eCCC
Q 042644          150 NSQN  153 (205)
Q Consensus       150 ~s~~  153 (205)
                      ....
T Consensus       287 ~p~~  290 (330)
T d1y3ta1         287 VPGL  290 (330)
T ss_dssp             ESST
T ss_pred             CCcc
Confidence            6543

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.23  E-value=3e-11  Score=102.43  Aligned_cols=77  Identities=14%  Similarity=0.116  Sum_probs=67.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      .+++.+++++||+..++|+|+.+.|++||++|++++.+   +++  +..+++||++++|+|.+|.+.|.|+ ++.++.++
T Consensus        41 ~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~n~~~-~~~~l~~~  114 (330)
T d1y3ta1          41 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DGE--RYLLISGDYANIPAGTPHSYRMQSH-RTRLVSYT  114 (330)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECST-TEEEEEEE
T ss_pred             cEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEE---CCE--EEEEcCCCEEEeCCCCeEEEEEcCC-CeEEEEEE
Confidence            58999999999999999999888999999999999886   455  6899999999999999999999987 45566665


Q ss_pred             eCC
Q 042644          150 NSQ  152 (205)
Q Consensus       150 ~s~  152 (205)
                      +..
T Consensus       115 ~p~  117 (330)
T d1y3ta1         115 MKG  117 (330)
T ss_dssp             ETT
T ss_pred             CCc
Confidence            543

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.22  E-value=3.2e-11  Score=100.26  Aligned_cols=77  Identities=16%  Similarity=0.191  Sum_probs=68.2

Q ss_pred             cceEEEEEEEcCCcccC-CccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           69 LGLSVARTDLDVDGMVV-PHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ..+.+..++++||+..+ +|+|+ ..|++||++|++++.+   +++  ++.+++||++++|++.+|+++|.|++++++|.
T Consensus       187 ~d~~~~i~~~~PG~~~~~~h~H~-~ee~~~vl~G~~~~~~---~~~--~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~  260 (273)
T d1sq4a_         187 HDMHVNIVNFEPGGVIPFAETHV-MEHGLYVLEGKAVYRL---NQD--WVEVEAGDFMWLRAFCPQACYSGGPGRFRYLL  260 (273)
T ss_dssp             CSEEEEEEEECSSSEESCCCCCS-EEEEEEEEECEEEEEE---TTE--EEEEETTCEEEEEESCCEEEECCSSSCEEEEE
T ss_pred             cceEEEEEEEccCCccccccccc-cceEEEEEccEEEEEE---CCE--EEEecCCCEEEECCCCCEEeEeCCCCCEEEEE
Confidence            46889999999998664 79995 5799999999999887   455  79999999999999999999999999999988


Q ss_pred             EEeC
Q 042644          148 VLNS  151 (205)
Q Consensus       148 ~~~s  151 (205)
                      ..+-
T Consensus       261 ~kd~  264 (273)
T d1sq4a_         261 YKDV  264 (273)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            7764

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=99.21  E-value=1.1e-10  Score=85.87  Aligned_cols=78  Identities=21%  Similarity=0.215  Sum_probs=63.3

Q ss_pred             cceEEEEEEEcCCcccCC---ccCCCCCeEEEEEecEEEEEEEeCC-CeEEEEEEcCCCEEEeCCCCeeEEEec-CCccE
Q 042644           69 LGLSVARTDLDVDGMVVP---HTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEVCVFPRGLLHFGFNV-GYEFA  143 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~p---H~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~l~~GDv~~vP~G~~H~~~N~-g~~~a  143 (205)
                      ..+...++++.|++....   |.| ...|++||++|++.+.+.+.. ++  +.+|++||.+++|++.+|.+.|. |++++
T Consensus        39 ~~~~~~~i~v~~~~~~~~~~~~~H-~~eE~~yVl~G~~~~~~g~~~~~~--~~~l~~GDsi~~~~~~pH~~~n~~g~~~a  115 (122)
T d2bnma2          39 PSLVPLVVDVLTDNPDDAKFNSGH-AGNEFLFVLEGEIHMKWGDKENPK--EALLPTGASMFVEEHVPHAFTAAKGTGSA  115 (122)
T ss_dssp             TTCEEEEEEECCCCGGGCCCCCCC-SSCEEEEEEESCEEEEESCTTSCE--EEEECTTCEEEECTTCCEEEEESTTSCCE
T ss_pred             CccEeEEEEEeCCCCCccccCCCc-ccEEEEEEEEEEEEEEEecccCCE--EEEEccCcEEEeCCCCCEEEEcCCCCccE
Confidence            467788899999886532   336 568999999999999875432 34  78999999999999999999997 78999


Q ss_pred             EEEEEE
Q 042644          144 TVFSVL  149 (205)
Q Consensus       144 ~~l~~~  149 (205)
                      .++++.
T Consensus       116 ~~l~Vt  121 (122)
T d2bnma2         116 KLIAVN  121 (122)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888763

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.16  E-value=6.7e-11  Score=96.87  Aligned_cols=82  Identities=15%  Similarity=0.121  Sum_probs=67.6

Q ss_pred             CCCCCCccceEEEEEEEcCCccc-CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           62 DFPGLNTLGLSVARTDLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        62 ~~P~l~~~gis~~~~~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      --|.+ +.++++..++++||+-. .+|.|....|++||++|++++.+   +++  .+.|++||.+++|+|..|.+.|.|+
T Consensus        40 ~sp~~-Ga~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~N~~~  113 (250)
T d1sefa_          40 GSPKL-GATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD---GQE--THELEAGGYAYFTPEMKMYLANAQE  113 (250)
T ss_dssp             SCGGG-TCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC---SSC--EEEEETTEEEEECTTSCCEEEESSS
T ss_pred             cCccc-CCcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEE---CCE--EEEEcCCCEEEEcCCCcEEEEECCC
Confidence            34555 34689999999999965 44445466789999999999886   455  6899999999999999999999999


Q ss_pred             ccEEEEEEE
Q 042644          141 EFATVFSVL  149 (205)
Q Consensus       141 ~~a~~l~~~  149 (205)
                      ++++++.+-
T Consensus       114 ~~~~~l~v~  122 (250)
T d1sefa_         114 ADTEVFLYK  122 (250)
T ss_dssp             SCEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            999998874

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=7.2e-11  Score=96.76  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=62.9

Q ss_pred             CCCCccceEEEEEEEcCCcccC-CccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644           64 PGLNTLGLSVARTDLDVDGMVV-PHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus        64 P~l~~~gis~~~~~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~  142 (205)
                      |.-...++.+..++++||+..+ +|.| ...|++||++|++.+.+   +++  .+.+++||++++|+|.+|++.|.|..+
T Consensus       164 p~~~~~~~~~~~~~~~PG~~~~~~h~h-~~ee~~~vl~G~g~~~i---~~~--~~~~~~GD~i~~~~~~ph~~~~~g~~~  237 (253)
T d1rc6a_         164 PKELGFDMNMHILSFAPGASHGYIETH-VQEHGAYILSGQGVYNL---DNN--WIPVKKGDYIFMGAYSLQAGYGVGRGE  237 (253)
T ss_dssp             CCSTTCSEEEEEEEECTTCCBEEEEEE-SSCEEEEEEESEEEEES---SSC--EEEEETTCEEEECSSEEEEEEEC----
T ss_pred             CccccccEEEEEEEECCCceEeEEEeC-CceEEEEEeCCEEEEEE---CCE--EEEecCCCEEEECCCCCEeeeeCCCCC
Confidence            4444557999999999999776 7888 67899999999999876   455  799999999999999999999999755


Q ss_pred             E-EEEEEE
Q 042644          143 A-TVFSVL  149 (205)
Q Consensus       143 a-~~l~~~  149 (205)
                      + +++..-
T Consensus       238 ~~~~~~~~  245 (253)
T d1rc6a_         238 AFSYIYSK  245 (253)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEE
Confidence            4 454433

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.13  E-value=1.4e-10  Score=99.23  Aligned_cols=74  Identities=20%  Similarity=0.218  Sum_probs=64.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+++..+.+.|++...||||+++.|++||++|++++.+.+  ++  ...|++||+++||+|.+|.+.|.+.....++.
T Consensus       248 ~~~~~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~~--~~--~~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~~  321 (348)
T d1juha_         248 TLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGD--YA--ATELGSGDVAFIPGGVEFKYYSEAYFSKVLFV  321 (348)
T ss_dssp             EEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEETT--SC--CEEECTTCEEEECTTCCEEEEESSSSEEEEEE
T ss_pred             ceeEEEEEecCCCCCCCcccCCCCEEEEEEeceEEEEeCC--cc--eEEecCCCEEEECCCCcEEEEeCCCCcEEEEE
Confidence            5788889999999999999999999999999999998732  33  57899999999999999999999887654443

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=99.12  E-value=1.3e-10  Score=99.62  Aligned_cols=78  Identities=17%  Similarity=0.133  Sum_probs=69.5

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      -.+.+....|.||...++|+| .+.++.||++|++.+..++  ++  ...+++||++++|.|.+|...|.|++++.++.+
T Consensus        85 ~~l~~~~~~l~PGe~~~~H~H-~~~~~~~vi~G~g~~t~v~--g~--~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~  159 (351)
T d2phda1          85 PTMWAGIQYLGPRETAPEHRH-SQNAFRFVVEGEGVWTVVN--GD--PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDG  159 (351)
T ss_dssp             SSCEEEEEEECTTCEEEEEEE-SSCEEEEEEECEEEEEEET--TE--EEEEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             chhhhheEEECCCCcCCcccc-ccceeEEEEECCcEEEEEC--CE--EEEEeCCCEEEeCCCceEEEEEcCCCCEEEEEe
Confidence            367778888999999999999 6889999999999877664  55  579999999999999999999999999999998


Q ss_pred             EeC
Q 042644          149 LNS  151 (205)
Q Consensus       149 ~~s  151 (205)
                      ++.
T Consensus       160 ~d~  162 (351)
T d2phda1         160 LDI  162 (351)
T ss_dssp             ECH
T ss_pred             ecC
Confidence            864

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=2.3e-10  Score=93.65  Aligned_cols=80  Identities=20%  Similarity=0.160  Sum_probs=66.8

Q ss_pred             CCCCccceEEEEEEEcCCcccCCccCC-CCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644           64 PGLNTLGLSVARTDLDVDGMVVPHTHP-RASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus        64 P~l~~~gis~~~~~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~  142 (205)
                      |.+ +.++.+..++++||+....|+|. +..|++||++|++++.+   +++  .+.+++||++++|+|..|.+.|.|+++
T Consensus        45 p~~-g~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~N~~~~~  118 (253)
T d1rc6a_          45 PKL-GASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGK--TFALSEGGYLYCPPGSLMTFVNAQAED  118 (253)
T ss_dssp             GGG-TCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCCCEEEECSSSC
T ss_pred             ccc-CCceEEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCC
Confidence            444 34799999999999976555554 44568899999999876   455  689999999999999999999999999


Q ss_pred             EEEEEEE
Q 042644          143 ATVFSVL  149 (205)
Q Consensus       143 a~~l~~~  149 (205)
                      ++++.+.
T Consensus       119 ~~~l~v~  125 (253)
T d1rc6a_         119 SQIFLYK  125 (253)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9998874

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.10  E-value=3.4e-10  Score=93.91  Aligned_cols=95  Identities=18%  Similarity=0.148  Sum_probs=75.5

Q ss_pred             CCeeEEEeccCCCCCCCc-cceEEEEEEEcCCcc-cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644           51 PYSSLTLVTAADFPGLNT-LGLSVARTDLDVDGM-VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP  128 (205)
Q Consensus        51 ~g~~~~~~~~~~~P~l~~-~gis~~~~~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP  128 (205)
                      |+..=+.++...-|.+.. ..++...++++|||. ..||.|+++.|++||++|++++.+   +++  .+.|++||.+++|
T Consensus        45 P~w~~~~~~vl~~p~~G~a~~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~---~g~--~~~L~~Gd~~y~P  119 (273)
T d1sq4a_          45 PFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL---QGQ--VHAMQPGGYAFIP  119 (273)
T ss_dssp             TTCEEEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE---SSC--EEEECTTEEEEEC
T ss_pred             CCCCCceEEEECCcccCCCcceEEEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEE---CCE--EEEecCCCEEEEC
Confidence            344334444444455543 369999999999985 466667788899999999999986   455  6899999999999


Q ss_pred             CCCeeEEEecCCccEEEEEEEe
Q 042644          129 RGLLHFGFNVGYEFATVFSVLN  150 (205)
Q Consensus       129 ~G~~H~~~N~g~~~a~~l~~~~  150 (205)
                      +|..|.+.|.|+++++++.+..
T Consensus       120 ~g~~h~~~N~g~~~a~~l~i~k  141 (273)
T d1sq4a_         120 PGADYKVRNTTGQHTRFHWIRK  141 (273)
T ss_dssp             TTCCEEEECCSSSCEEEEEEEE
T ss_pred             CCCcEeeeecCCCCEEEEEEEe
Confidence            9999999999999999887653

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.07  E-value=3.3e-10  Score=83.62  Aligned_cols=71  Identities=15%  Similarity=0.085  Sum_probs=58.9

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      .+++....++||..   |||+...|++||++|++.+.+   +|+  .+.|++||+++||+|..|.+.|.+  +++++.++
T Consensus        53 ~~~~~~~~~~~g~~---~~~~~~~E~~~vl~G~~~~~~---~g~--~~~l~~Gd~~~~p~g~~h~~~~~~--~~~~~~v~  122 (128)
T d2pyta1          53 SMAAGFMQWDNAFF---PWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTPT--SVRFLYVA  122 (128)
T ss_dssp             SSEEEEEEEEEEEE---EEECSSEEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCEEEEEEEE--EEEEEEEE
T ss_pred             ceEEEEEEECCCcc---ceeCCccEEEEEEEeEEEEEE---CCE--EEEecCCCEEEECCCCEEEEEeCC--CEEEEEEE
Confidence            57778888888863   677788999999999999975   465  789999999999999999999964  46666665


Q ss_pred             e
Q 042644          150 N  150 (205)
Q Consensus       150 ~  150 (205)
                      .
T Consensus       123 ~  123 (128)
T d2pyta1         123 W  123 (128)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=99.06  E-value=8.9e-10  Score=94.54  Aligned_cols=93  Identities=11%  Similarity=-0.029  Sum_probs=73.2

Q ss_pred             CCCCCeeEEEeccCCC-CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEE
Q 042644           48 DKFPYSSLTLVTAADF-PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCV  126 (205)
Q Consensus        48 ~~~~g~~~~~~~~~~~-P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~  126 (205)
                      +.. |..+..++..+. +.+.  .+++....|+||....+|+|+ ..|++||++|++++.+   +++  ++.+++||+++
T Consensus       235 ~~~-g~~l~y~nP~tg~~~~~--ti~~~~~~l~pG~~~~~hrH~-~~~v~~v~~G~g~~~i---~g~--~~~~~~GDv~~  305 (355)
T d3bu7a1         235 PYD-GLILRYTNPQTGGHPML--TMGASMQMLRPGEHTKAHRHT-GNVIYNVAKGQGYSIV---GGK--RFDWSEHDIFC  305 (355)
T ss_dssp             TTT-BEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCEEES-SCEEEEEEECCEEEEE---TTE--EEEECTTCEEE
T ss_pred             CCC-ceEEEeccccccCCCcc--eeeEEEEEECCCCccCCcCcc-CcEEEEEEECcEEEEE---CCE--EEEeeCCCEEE
Confidence            444 777777775443 4555  466677789999999999995 6799999999999887   455  68999999999


Q ss_pred             eCCCCeeEEEecCCccEEEEEEE
Q 042644          127 FPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus       127 vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      +|++..|...|.++++..++..+
T Consensus       306 vP~~~~h~~~N~s~~e~~~Lf~~  328 (355)
T d3bu7a1         306 VPAWTWHEHCNTQERDDACLFSF  328 (355)
T ss_dssp             ECTTCCEEEEECCSSCCEEEEEE
T ss_pred             eCCCCcEEeecCCCCCcEEEEEe
Confidence            99999999999987654444333

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.91  E-value=8.3e-10  Score=90.04  Aligned_cols=105  Identities=18%  Similarity=0.120  Sum_probs=75.7

Q ss_pred             CCCCCCCCceeecccCCCCCCCCCCeeEEEeccCCCCCC-CccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEE
Q 042644           28 PDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGL-NTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAG  106 (205)
Q Consensus        28 ~~~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l-~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~  106 (205)
                      .+.+|+++|+.+.+  |+-   . +..+...-+   |.. .+..+++..++++||+...  .| ...|++||++|++++.
T Consensus        15 ~a~i~P~~~v~s~~--P~w---~-~~~~~~l~s---P~~g~~~~F~~~~v~~~pGg~~~--~~-~~E~~~~Vl~G~~~~~   82 (245)
T d1sfna_          15 HAVITPETFVRTAL--AEW---P-GSAIVLHIA---PVVGLGARFVQFTAEMPAGAQAT--ES-VYQRFAFVLSGEVDVA   82 (245)
T ss_dssp             EEEECGGGCCCBCC--TTS---T-TCEEEEEEC---TTSTTCCSSEEEEEEECTTCEEE--CC-SSEEEEEEEEEEEEEE
T ss_pred             eEEECCcccEecCC--CCC---C-CcEEEEEec---CCCCCCCceEEEEEEECCCCCCC--CC-CccEEEEEEECEEEEE
Confidence            45567888876655  211   1 222222222   221 1336899999999999654  34 4579999999999987


Q ss_pred             EEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644          107 FVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL  149 (205)
Q Consensus       107 ~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~  149 (205)
                      +   +++  .+.|++||.+++|+|..|.+.|.|++++.++-..
T Consensus        83 ~---~g~--~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~~~~  120 (245)
T d1sfna_          83 V---GGE--TRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKP  120 (245)
T ss_dssp             C---SSC--EEEECTTEEEEECTTCCCEEEEEEEEEEEEEEEC
T ss_pred             E---CCE--EEEecCCCEEEeCCCCcEEEEeCCCccEEEEEee
Confidence            5   455  6899999999999999999999999988887653

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=5.7e-09  Score=87.44  Aligned_cols=87  Identities=11%  Similarity=-0.042  Sum_probs=68.7

Q ss_pred             CeeEEEeccCCC-CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCC
Q 042644           52 YSSLTLVTAADF-PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRG  130 (205)
Q Consensus        52 g~~~~~~~~~~~-P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G  130 (205)
                      |..+...+..+. +...  .+.+....++||....+|+| ...|++||++|++++.+   +++  +..+++||++++|++
T Consensus       204 g~~v~~~~~~~~~~~~~--t~~~~~~~l~pG~~~~~h~h-~~~~~~~v~~G~g~~~v---~~~--~~~~~~GD~~~vP~~  275 (308)
T d2d40a1         204 GYKMRYVNPVTGGYPMP--SMGAFLQLLPKGFASRVART-TDSTIYHVVEGSGQVII---GNE--TFSFSAKDIFVVPTW  275 (308)
T ss_dssp             BEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCBEE-SSCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTT
T ss_pred             ceEEEeeccccccCccc--eeEEEEEEccCCCccCCccC-ChheEEEEEeCcEEEEE---CCE--EEEEeCCCEEEeCCC
Confidence            666666665444 3344  46777778999999999999 57899999999999877   455  689999999999999


Q ss_pred             CeeEEEecCCccEEEEEE
Q 042644          131 LLHFGFNVGYEFATVFSV  148 (205)
Q Consensus       131 ~~H~~~N~g~~~a~~l~~  148 (205)
                      ..|...|.+  +..++.+
T Consensus       276 ~~h~~~~~~--d~~l~~v  291 (308)
T d2d40a1         276 HGVSFQTTQ--DSVLFSF  291 (308)
T ss_dssp             CCEEEEEEE--EEEEEEE
T ss_pred             CeEEEEcCC--CeEEEEE
Confidence            999999865  4445544

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.87  E-value=4.9e-09  Score=89.81  Aligned_cols=76  Identities=21%  Similarity=0.167  Sum_probs=66.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec-CCccEEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV-GYEFATVFSV  148 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~-g~~~a~~l~~  148 (205)
                      .|.+....+.||...++|+| ...++.||++|++....++  ++  ...+++||++++|+|.+|...|. +++++.++.+
T Consensus        84 ~l~~~~q~l~PGe~~~~HrH-~~~~~~~vi~G~g~~t~v~--ge--~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~  158 (355)
T d3bu7a1          84 WLFSGIQTMKAGERAGAHRH-AASALRFIMEGSGAYTIVD--GH--KVELGANDFVLTPNGTWHEHGILESGTECIWQDG  158 (355)
T ss_dssp             TBEEEEEEECTTCBCCCEEE-SSCEEEEEEECSCEEEEET--TE--EEEECTTCEEEECTTCCEEEEECTTCCCEEEEEE
T ss_pred             hhhhheEeeCCCCcCccccc-ccceeEEEEECCcEEEEEC--CE--EEEeeCCCEEEeCCCceEeeecCCCCCcEEEEEe
Confidence            58888889999999999999 6889999999998776664  55  57899999999999999999996 5678888776


Q ss_pred             Ee
Q 042644          149 LN  150 (205)
Q Consensus       149 ~~  150 (205)
                      .+
T Consensus       159 ~D  160 (355)
T d3bu7a1         159 LD  160 (355)
T ss_dssp             EC
T ss_pred             cc
Confidence            65

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.81  E-value=2.2e-08  Score=85.48  Aligned_cols=87  Identities=16%  Similarity=0.135  Sum_probs=68.3

Q ss_pred             CeeEEEeccCC-CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCC
Q 042644           52 YSSLTLVTAAD-FPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRG  130 (205)
Q Consensus        52 g~~~~~~~~~~-~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G  130 (205)
                      +..+..++..+ .+.+.+  +++....++||....+|+| .+.|++||++|++++.+   +++  +..+++||++++|++
T Consensus       245 ~~~l~yvnp~tg~~~~~t--~~~~~~~l~pG~~~~~hrh-~~~~v~~vi~G~g~~~i---~~~--~~~~~~gDvf~vP~~  316 (351)
T d2phda1         245 HAAIRYVNPTTGGDVMPT--LRCEFHRLRAGTETATRNE-VGSTVFQVFEGAGAVVM---NGE--TTKLEKGDMFVVPSW  316 (351)
T ss_dssp             EEEEEEBCTTTSSBSBTT--BEEEEEEECTTCBCCCEEE-SSCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTT
T ss_pred             ceeEEEeccccCCCcCCc--ceEEEEEecCCCcCCCccc-cCcEEEEEEeCcEEEEE---CCE--EEEEcCCCEEEeCCC
Confidence            44666666544 455664  5556666899999999999 57899999999999887   455  689999999999999


Q ss_pred             CeeEEEecCCccEEEEEE
Q 042644          131 LLHFGFNVGYEFATVFSV  148 (205)
Q Consensus       131 ~~H~~~N~g~~~a~~l~~  148 (205)
                      ..|...|.  +++.++.+
T Consensus       317 ~~h~~~n~--~~~~Lf~~  332 (351)
T d2phda1         317 VPWSLQAE--TQFDLFRF  332 (351)
T ss_dssp             CCEEEEES--SCEEEEEE
T ss_pred             CcEEEecC--CCeEEEEE
Confidence            99999995  45655554

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.69  E-value=5e-09  Score=81.43  Aligned_cols=69  Identities=20%  Similarity=0.245  Sum_probs=56.2

Q ss_pred             cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCc
Q 042644           84 VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPG  155 (205)
Q Consensus        84 ~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg  155 (205)
                      ...|.|+ ..|+.||++|++.+.+.+ +++.+...+++||+++||+|..||+....+...+++..|.. .+|
T Consensus        93 ~~EH~H~-~dEvr~vv~G~g~f~v~~-~d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~~-~~g  161 (179)
T d1zrra1          93 LNEHTHG-EDEVRFFVEGAGLFCLHI-GDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDN-PEG  161 (179)
T ss_dssp             HSCBEES-SCEEEEEEESCCCCCEEC-SSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECC-GGG
T ss_pred             cccccCC-CceEEEEEeCeEEEEEEc-CCeEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEecC-CCC
Confidence            3689996 589999999999998876 46667788999999999999999997666666777776644 344

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=6.3e-08  Score=74.97  Aligned_cols=84  Identities=13%  Similarity=0.224  Sum_probs=66.2

Q ss_pred             EEEEEEEcCCcc----------cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCc
Q 042644           72 SVARTDLDVDGM----------VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYE  141 (205)
Q Consensus        72 s~~~~~l~pgg~----------~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~  141 (205)
                      ..-.+++.|..+          ..-|.|+ ..|+.||++|++.+.+.+.+++.+...+++||++++|+|..||+.-..+.
T Consensus        63 ~~D~i~l~p~~~pn~~~~~~~F~~EH~H~-~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~~  141 (179)
T d1vr3a1          63 WMDIITICKDTLPNYEEKIKMFFEEHLHL-DEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKN  141 (179)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECS-SCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTC
T ss_pred             ceEEEEECCccCCCHHHHHHHHhhceeCC-CcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCCC
Confidence            344556766542          3689996 57999999999999998877888889999999999999999999866566


Q ss_pred             cEEEEEEEeCCCCcee
Q 042644          142 FATVFSVLNSQNPGVV  157 (205)
Q Consensus       142 ~a~~l~~~~s~~pg~~  157 (205)
                      ..+++-.|. ..|+..
T Consensus       142 ~v~aiRlF~-~~~~W~  156 (179)
T d1vr3a1         142 YVKAMRLFV-GEPVWT  156 (179)
T ss_dssp             CEEEEEEES-SSCCCC
T ss_pred             CEEEEEEEC-CCCeee
Confidence            677776664 456653

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=98.31  E-value=4.7e-06  Score=61.33  Aligned_cols=93  Identities=12%  Similarity=0.012  Sum_probs=67.0

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEE-EEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCC
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVART-DLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRG  130 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~-~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G  130 (205)
                      .|.++.....+.-..+-.  .+..+ ...+|.+..+|+|...+++++|++|++.+.+.+...+....-.+.++.++||+|
T Consensus        14 RG~l~~i~~~~~~~f~~k--r~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg   91 (135)
T d2pa7a1          14 RGSLVAIEENKNIPFSIK--RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPA   91 (135)
T ss_dssp             TEEEEEEETTTTSSSCCC--EEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTT
T ss_pred             CCCEEEEEcccccccccc--eEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCC
Confidence            457776665554333322  22223 356788999999999999999999999998887555443334488899999999


Q ss_pred             CeeEEEecCCccEEEEE
Q 042644          131 LLHFGFNVGYEFATVFS  147 (205)
Q Consensus       131 ~~H~~~N~g~~~a~~l~  147 (205)
                      .+|.+.+.++. +.++.
T Consensus        92 ~~h~~~~l~~~-s~ll~  107 (135)
T d2pa7a1          92 VWHEMHDFSSD-CVMMV  107 (135)
T ss_dssp             CEEEEECCCTT-CEEEE
T ss_pred             EeeeEEecCCC-cEEEE
Confidence            99999998755 44444

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=98.30  E-value=3.2e-07  Score=68.56  Aligned_cols=77  Identities=13%  Similarity=-0.072  Sum_probs=58.4

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .|....++.++||+..++|+|+ ..|.+|||+|++...-.+...   ...+.+|+.++.|+|..|... .+.+.++++..
T Consensus        41 tg~~~~l~r~~~G~~~p~H~H~-~~e~~~VL~G~l~~~~g~~~~---g~~~~~g~y~~~Pag~~H~~~-~~~e~~~~~~~  115 (144)
T d2o1qa1          41 MGSWTAIFDCPAGSSFAAHVHV-GPGEYFLTKGKMDVRGGKAAG---GDTAIAPGYGYESANARHDKT-EFPVASEFYMS  115 (144)
T ss_dssp             TTEEEEEEEECTTEEECCEEES-SCEEEEEEEEEEEETTCGGGT---SEEEESSEEEEECTTCEESCC-EEEEEEEEEEE
T ss_pred             CCcEEEEEEeCCCcCcCCCccc-cCEEEEEEEEEEEecCCCcCC---CceEeCCceeEcCCCCeEccc-cCCCCEEEEEE
Confidence            3778899999999999999995 678999999999764211111   257889999999999999742 24566766665


Q ss_pred             Ee
Q 042644          149 LN  150 (205)
Q Consensus       149 ~~  150 (205)
                      +.
T Consensus       116 ~~  117 (144)
T d2o1qa1         116 FL  117 (144)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.2e-05  Score=59.82  Aligned_cols=63  Identities=11%  Similarity=0.115  Sum_probs=49.1

Q ss_pred             ccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEE-EecCCccEEEEE-EEeC
Q 042644           83 MVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFG-FNVGYEFATVFS-VLNS  151 (205)
Q Consensus        83 ~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~-~N~g~~~a~~l~-~~~s  151 (205)
                      +..||-|+ .-++.||++|++.+.+   +++  .+.+++||++++|+|..|.. ...+++++.++. .|+.
T Consensus        30 ~~Rp~g~~-~Y~l~yv~~G~G~~~i---~~~--~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~F~~   94 (161)
T d2arca_          30 IDRPLGMK-GYILNLTIRGQGVVKN---QGR--EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRP   94 (161)
T ss_dssp             EEETTCCS-SEEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEECC
T ss_pred             EECCCCCC-CEEEEEEEEeEEEEEE---CCE--EEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEEEeC
Confidence            34788885 5799999999999876   455  79999999999999999975 444566766543 4543

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=5e-05  Score=51.76  Aligned_cols=55  Identities=16%  Similarity=0.244  Sum_probs=40.6

Q ss_pred             EEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644           76 TDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN  137 (205)
Q Consensus        76 ~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N  137 (205)
                      ....||.. +.++  ...|++||++|++++..  ++|+  ..++++||++++|+|..=.+..
T Consensus        23 W~~~pg~f-~~~y--~~~E~~~ileG~v~i~~--~~G~--~~~~~aGD~~~~p~G~~~~W~v   77 (88)
T d1o5ua_          23 WEKEVSEF-DWYY--DTNETCYILEGKVEVTT--EDGK--KYVIEKGDLVTFPKGLRCRWKV   77 (88)
T ss_dssp             EEECSEEE-EEEC--SSCEEEEEEEEEEEEEE--TTCC--EEEEETTCEEEECTTCEEEEEE
T ss_pred             EeecCcEE-EEEc--CccEEEEEEEeEEEEEc--CCCC--EEEEeCCCEEEECCCCEEEEEE
Confidence            44566543 3343  56899999999999853  4565  5789999999999998855543

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=97.71  E-value=0.00037  Score=53.53  Aligned_cols=83  Identities=14%  Similarity=0.083  Sum_probs=67.4

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeC--C--C---eEEEEEEcCCCEEEeCCC-CeeEEEecC-C
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT--N--R---QVFQVMLKAGEVCVFPRG-LLHFGFNVG-Y  140 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~--~--~---~~~~~~l~~GDv~~vP~G-~~H~~~N~g-~  140 (205)
                      .+.+..+...||...|+|=|+++.-++.|++|+++.....-  +  .   ...+..+++|++..+... -+|.+.|.+ +
T Consensus        65 ~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~~  144 (186)
T d3elna1          65 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  144 (186)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             CeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCCC
Confidence            58899999999999999999989999999999998877641  1  1   234688999999888654 599999988 4


Q ss_pred             ccEEEEEEEeCC
Q 042644          141 EFATVFSVLNSQ  152 (205)
Q Consensus       141 ~~a~~l~~~~s~  152 (205)
                      ++++.|-++..+
T Consensus       145 ~~avsLHvYspP  156 (186)
T d3elna1         145 EPAVSLHLYSPP  156 (186)
T ss_dssp             CCEEEEEEEESC
T ss_pred             CCeEEEEEeCCC
Confidence            788877777654

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=97.39  E-value=0.0007  Score=52.20  Aligned_cols=80  Identities=15%  Similarity=0.101  Sum_probs=61.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeC--CCe-E---EEEEEcCCCEEEe--CCCCeeEEEec-CC
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT--NRQ-V---FQVMLKAGEVCVF--PRGLLHFGFNV-GY  140 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~--~~~-~---~~~~l~~GDv~~v--P~G~~H~~~N~-g~  140 (205)
                      ++.+..+...||...++|-|. ...++.|++|+....+...  ++. +   ....+++||+..+  +.|.+|.+.|. ++
T Consensus        67 ~f~i~~i~W~pG~~tpiHdH~-~w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~IH~v~N~~~~  145 (192)
T d2gm6a1          67 RFSIVSFVWGPGQRTPIHDHT-VWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  145 (192)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEecCCCCCCCCCCCC-CceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCceeEEecCCCC
Confidence            588889999999999999995 5688999999987766542  221 1   2467999999877  34679999997 56


Q ss_pred             ccEEEEEEEe
Q 042644          141 EFATVFSVLN  150 (205)
Q Consensus       141 ~~a~~l~~~~  150 (205)
                      ++++-|=++.
T Consensus       146 ~~avSLHvYg  155 (192)
T d2gm6a1         146 RVSISIHVYG  155 (192)
T ss_dssp             SCEEEEEEES
T ss_pred             ccEEEEEECC
Confidence            6776666665

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=97.34  E-value=0.00058  Score=51.63  Aligned_cols=64  Identities=14%  Similarity=0.187  Sum_probs=52.9

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec
Q 042644           73 VARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV  138 (205)
Q Consensus        73 ~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~  138 (205)
                      ..++.=.|+...--|+.+ ..|++|=++|...+.+++ +++.....+++||++.+|+.++|+-+-.
T Consensus        37 iVMvVGGPN~R~DyH~~~-~eE~FyQlkG~m~Lkv~e-~g~~~di~I~EGe~fLLP~~vpHSPqR~  100 (174)
T d1yfua1          37 IVTVVGGPNHRTDYHDDP-LEEFFYQLRGNAYLNLWV-DGRRERADLKEGDIFLLPPHVRHSPQRP  100 (174)
T ss_dssp             EEEEECSCBCCCCEEECS-SCEEEEEEESCEEEEEEE-TTEEEEEEECTTCEEEECTTCCEEEEBC
T ss_pred             EEEEecCCcccCccccCc-chhheeeeccceEEEEEe-CCceEEEEcCCCcEEEeCCCCCCCcccC
Confidence            344555566666778884 679999999999999887 6777789999999999999999998763

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.25  E-value=0.0018  Score=50.17  Aligned_cols=71  Identities=17%  Similarity=0.139  Sum_probs=55.6

Q ss_pred             cCCcccCCccCC---CCCeEEEEEecEEEEEEEeCC------CeEEEEEEcCCC--EEEeCCCCeeEEEecCCccEEEEE
Q 042644           79 DVDGMVVPHTHP---RASEMLFVFKGVVIAGFVDTN------RQVFQVMLKAGE--VCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        79 ~pgg~~~pH~Hp---~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~GD--v~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      .+|-++.+|+|.   ....+++|++|++...++|-.      ++.+...|.+.+  .++||+|..|.+...++. +.++.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~-~~i~Y  132 (198)
T d2ixca1          54 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STVMY  132 (198)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEEEE
T ss_pred             ehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCc-ceeec
Confidence            688899999873   367999999999999988753      567788887754  999999999999988654 44444


Q ss_pred             EEe
Q 042644          148 VLN  150 (205)
Q Consensus       148 ~~~  150 (205)
                      ..+
T Consensus       133 ~~s  135 (198)
T d2ixca1         133 LCS  135 (198)
T ss_dssp             EES
T ss_pred             ccC
Confidence            433

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.24  E-value=0.0016  Score=49.86  Aligned_cols=68  Identities=18%  Similarity=0.088  Sum_probs=54.1

Q ss_pred             cCCcccCCccCCC---CCeEEEEEecEEEEEEEeCC------CeEEEEEEcCC--CEEEeCCCCeeEEEecCCccEEEE
Q 042644           79 DVDGMVVPHTHPR---ASEMLFVFKGVVIAGFVDTN------RQVFQVMLKAG--EVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        79 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~G--Dv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      .+|-++.+|+|..   .+.+++|++|++...++|-.      ++.....|.+.  ..++||+|..|.++..++.....+
T Consensus        55 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~Y  133 (183)
T d1dzra_          55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLY  133 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEE
T ss_pred             ccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEEE
Confidence            6888999998842   46899999999999998843      56777888665  599999999999998865443333

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=97.22  E-value=0.0014  Score=49.87  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=56.6

Q ss_pred             EcCCcccCCccCCC---CCeEEEEEecEEEEEEEeCC------CeEEEEEEc--CCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           78 LDVDGMVVPHTHPR---ASEMLFVFKGVVIAGFVDTN------RQVFQVMLK--AGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        78 l~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~--~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      -.+|.++.+|+|..   ...+++|++|++...++|-.      ++.....|.  .+..++||+|..|.++...+. +.++
T Consensus        52 s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~-~~i~  130 (176)
T d1wlta1          52 SRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS-IVIY  130 (176)
T ss_dssp             ECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE-EEEE
T ss_pred             echheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeecccc-ceEE
Confidence            36888999998832   34699999999999998753      566677786  455999999999999998764 3333


Q ss_pred             EEEe-CCCCc
Q 042644          147 SVLN-SQNPG  155 (205)
Q Consensus       147 ~~~~-s~~pg  155 (205)
                      ...+ .-+|+
T Consensus       131 Y~~~~~y~p~  140 (176)
T d1wlta1         131 FITHNEYSPP  140 (176)
T ss_dssp             EEESSCCCGG
T ss_pred             EecCCccChh
Confidence            3333 23554

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.0019  Score=48.73  Aligned_cols=66  Identities=15%  Similarity=0.263  Sum_probs=53.1

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC---CeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN---RQVFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~---~~~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      .++.=.|+...=-|+.+ ..|++|=++|...+.+++.+   ++.....+++||++..|+.++|+-+-..+
T Consensus        36 VmvVGGPN~R~DyH~~~-~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~  104 (175)
T d1zvfa1          36 VMIVGGPNERTDYHINP-TPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFAD  104 (175)
T ss_dssp             EEEECSSBCCSCEEECS-SCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTT
T ss_pred             EEEEcCCCcccccccCc-chhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCCCC
Confidence            44445666677778885 57999999999999998753   56678899999999999999999876433

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.14  E-value=0.0012  Score=50.48  Aligned_cols=78  Identities=15%  Similarity=0.031  Sum_probs=57.5

Q ss_pred             cCCcccCCccC--CCCCeEEEEEecEEEEEEEeCC------CeEEEEEEcC--CCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           79 DVDGMVVPHTH--PRASEMLFVFKGVVIAGFVDTN------RQVFQVMLKA--GEVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        79 ~pgg~~~pH~H--p~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~--GDv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .+|-++.+|++  +....+++|++|++...++|-.      ++.....|..  +..++||+|.+|.++..++.....+.+
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~~~v~Y~~  136 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKT  136 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCceEEEecc
Confidence            57888899976  3356899999999999888743      5777888877  558999999999999886554443333


Q ss_pred             EeCCCCce
Q 042644          149 LNSQNPGV  156 (205)
Q Consensus       149 ~~s~~pg~  156 (205)
                      -+.-+|+.
T Consensus       137 s~~y~~~~  144 (184)
T d2ixha1         137 TDFWAPEH  144 (184)
T ss_dssp             SSCCCGGG
T ss_pred             ccccCccc
Confidence            22234543

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.12  E-value=0.0013  Score=50.26  Aligned_cols=77  Identities=17%  Similarity=0.117  Sum_probs=56.9

Q ss_pred             cCCcccCCccCCC--CCeEEEEEecEEEEEEEeCC------CeEEEEEEcCC--CEEEeCCCCeeEEEecCCccEEEEEE
Q 042644           79 DVDGMVVPHTHPR--ASEMLFVFKGVVIAGFVDTN------RQVFQVMLKAG--EVCVFPRGLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus        79 ~pgg~~~pH~Hp~--a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~G--Dv~~vP~G~~H~~~N~g~~~a~~l~~  148 (205)
                      .+|.++.+|+|..  ...+++|++|++...++|-.      ++.+...|.+.  ..++||+|..|.+...++. +.++..
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~-~~i~Y~  132 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNYK  132 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCc-eEEEEe
Confidence            5788899998732  46799999999999998853      56677888664  5899999999999987655 444433


Q ss_pred             EeC-CCCce
Q 042644          149 LNS-QNPGV  156 (205)
Q Consensus       149 ~~s-~~pg~  156 (205)
                      .+. -+|+.
T Consensus       133 ~s~~y~p~~  141 (183)
T d1ep0a_         133 CTELYHPEY  141 (183)
T ss_dssp             ESSCCCGGG
T ss_pred             ccCCcCccc
Confidence            333 35553

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=97.06  E-value=0.0029  Score=50.79  Aligned_cols=62  Identities=19%  Similarity=0.237  Sum_probs=46.4

Q ss_pred             EcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC----------------------------------eEEEEEEcCCC
Q 042644           78 LDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR----------------------------------QVFQVMLKAGE  123 (205)
Q Consensus        78 l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~----------------------------------~~~~~~l~~GD  123 (205)
                      -..|+..++|+.+. .-++..++|+=+..+..+..                                  +.+..+|++||
T Consensus       129 ~~~g~~~~~H~D~~-d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD  207 (319)
T d1vrba1         129 AKNGGGFKAHFDAY-TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGT  207 (319)
T ss_dssp             ECSSCCCCSEECSS-EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTC
T ss_pred             cCCCCCCccccCCC-ceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCC
Confidence            34455789998853 45666789998887765421                                  12457899999


Q ss_pred             EEEeCCCCeeEEEecCC
Q 042644          124 VCVFPRGLLHFGFNVGY  140 (205)
Q Consensus       124 v~~vP~G~~H~~~N~g~  140 (205)
                      ++++|+|.+|+..|.++
T Consensus       208 vLYiP~gw~H~v~s~~~  224 (319)
T d1vrba1         208 MLYLPRGLWHSTKSDQA  224 (319)
T ss_dssp             EEEECTTCEEEEECSSC
T ss_pred             EEEeCCCceEEeEecCC
Confidence            99999999999998754

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=97.01  E-value=0.0033  Score=48.69  Aligned_cols=65  Identities=12%  Similarity=0.105  Sum_probs=52.0

Q ss_pred             EcCCcccCCccCCC---CCeEEEEEecEEEEEEEeCC------CeEEEEEEcCC--CEEEeCCCCeeEEEecCCcc
Q 042644           78 LDVDGMVVPHTHPR---ASEMLFVFKGVVIAGFVDTN------RQVFQVMLKAG--EVCVFPRGLLHFGFNVGYEF  142 (205)
Q Consensus        78 l~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~G--Dv~~vP~G~~H~~~N~g~~~  142 (205)
                      -.+|-+..+|+|..   ...+++|++|++...++|-.      ++.....|.+.  ..++||+|..|.+....+..
T Consensus        54 s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t  129 (202)
T d1oi6a_          54 SKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDT  129 (202)
T ss_dssp             ECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTE
T ss_pred             chhheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccccc
Confidence            46788899998843   46999999999999998743      56667777655  58999999999999886553

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=96.81  E-value=0.0092  Score=45.62  Aligned_cols=68  Identities=13%  Similarity=0.015  Sum_probs=52.5

Q ss_pred             cCCcccCCccCC---CCCeEEEEEecEEEEEEEeCC------CeEEEEEE--cCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644           79 DVDGMVVPHTHP---RASEMLFVFKGVVIAGFVDTN------RQVFQVML--KAGEVCVFPRGLLHFGFNVGYEFATVF  146 (205)
Q Consensus        79 ~pgg~~~pH~Hp---~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l--~~GDv~~vP~G~~H~~~N~g~~~a~~l  146 (205)
                      .+|-++.+|+|.   ...++++|++|++...++|-.      ++.+...|  +.+..++||+|..|.+...++.....+
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y  132 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCY  132 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEE
Confidence            578888999752   356899999999999998854      34455555  677899999999999998865544433

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=96.55  E-value=0.0025  Score=49.07  Aligned_cols=64  Identities=20%  Similarity=0.240  Sum_probs=51.4

Q ss_pred             cCCcccCCccCCCCCeEEEEE-ecEEEEEEEeCC-----CeEEEEEEcCCCEEEeCCCCeeEEEecCCccE
Q 042644           79 DVDGMVVPHTHPRASEMLFVF-KGVVIAGFVDTN-----RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA  143 (205)
Q Consensus        79 ~pgg~~~pH~Hp~a~Ei~yVl-~G~~~v~~~~~~-----~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a  143 (205)
                      .+|-++.+|+|+. ..+++++ .|.+...+++-.     ++.+...|..+..++||+|..|.+...++...
T Consensus        65 ~kgvlRGlH~q~~-~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~  134 (194)
T d1nxma_          65 RKNVLRGLHAEPW-DKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVA  134 (194)
T ss_dssp             ETTBEEEEEECSS-CEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEE
T ss_pred             eeeEEEEEEeccc-hhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeecccee
Confidence            5788999999975 5667665 699888777642     46678899999999999999999998865533

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.033  Score=47.50  Aligned_cols=71  Identities=13%  Similarity=0.074  Sum_probs=47.9

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      |+++........--...-..-+..|++||-+|++++.-..  |   ...+++||.++||+|+.+.+.-.+  +++.+.
T Consensus       129 G~aihiy~~n~sM~~~~f~NADGDeLi~~~~Gsg~l~Tef--G---~L~v~pGDyvVIPRG~~frv~~~~--~~r~yi  199 (439)
T d1eyba_         129 GLAIHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEF--G---KMLVQPNEICVIQRGMRFSIDVFE--ETRGYI  199 (439)
T ss_dssp             CEEEEEEEECSCCCSEEEEESSEEEEEEEEESCEEEEETT--E---EEEECTTEEEEECTTCCEEEECSS--SEEEEE
T ss_pred             CcEEEEEecCCCCccceeEcCCCCEEEEEEeCcEEEEEee--e---EEEecCCcEEEecCceEEEEecCC--CceEEE
Confidence            5555444433322222335568899999999999876422  4   489999999999999998886543  444433

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.013  Score=47.93  Aligned_cols=65  Identities=12%  Similarity=0.146  Sum_probs=48.0

Q ss_pred             EEEcCCc-ccCCccCCCCCeEEEEEecEEEEEEEeCC-----------------------------------CeEEEEEE
Q 042644           76 TDLDVDG-MVVPHTHPRASEMLFVFKGVVIAGFVDTN-----------------------------------RQVFQVML  119 (205)
Q Consensus        76 ~~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~-----------------------------------~~~~~~~l  119 (205)
                      +-+.++| ..+.|+-+. .-++.+++|+=++.+..+.                                   -+.+..+|
T Consensus       173 lwiG~~gs~t~~H~D~~-~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l  251 (335)
T d1h2ka_         173 LLIGMEGNVTPAHYDEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVV  251 (335)
T ss_dssp             EEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEE
T ss_pred             EEEcCCCCCCccccccc-cceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEE
Confidence            4455544 567787643 4677889999888876432                                   02356789


Q ss_pred             cCCCEEEeCCCCeeEEEecCCc
Q 042644          120 KAGEVCVFPRGLLHFGFNVGYE  141 (205)
Q Consensus       120 ~~GDv~~vP~G~~H~~~N~g~~  141 (205)
                      ++||+++||+|.+|...|.++.
T Consensus       252 ~pGd~L~iP~~w~H~V~~~~~~  273 (335)
T d1h2ka_         252 GPGDVLYIPMYWWHHIESLLNG  273 (335)
T ss_dssp             CTTCEEEECTTCEEEEEECTTS
T ss_pred             CCCCEEeeCCCCeEEEEEcCCC
Confidence            9999999999999999997554

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.02  Score=44.53  Aligned_cols=71  Identities=18%  Similarity=0.299  Sum_probs=52.8

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCC--CCeeEEEecC-CccEEEEE
Q 042644           73 VARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR--GLLHFGFNVG-YEFATVFS  147 (205)
Q Consensus        73 ~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~--G~~H~~~N~g-~~~a~~l~  147 (205)
                      +..-.+.||+-+++|-|.+-.-+.||++|++.-  -|+-|.  ..++++||+-.+-+  |..|.-.|.. +++++++=
T Consensus        43 ~ndd~~~pg~gf~~HpH~g~eivT~vl~G~~~H--~DS~G~--~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~lQ  116 (231)
T d1tq5a1          43 INDDVIEAGQGFGTHPHKDMEILTYVLEGTVEH--QDSMGN--KEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQ  116 (231)
T ss_dssp             EEEEEECTTCEEEEEEECSCEEEEEEEESEEEE--EESSSC--EEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEE
T ss_pred             EecceecCCCCCCCCCcCCeeEEEEEEeEEEEE--CCCCCC--cEEECCCcEEEEecCCcEEEEeeccccCCCeEEEE
Confidence            446679999999999996555555999998764  455454  58999999888865  6899998864 44565544

>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein Atu3615
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.32  E-value=0.24  Score=35.62  Aligned_cols=88  Identities=15%  Similarity=0.065  Sum_probs=61.7

Q ss_pred             CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecE-EEEEEEeCCCeEEEEEEc----CCC--E
Q 042644           52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGV-VIAGFVDTNRQVFQVMLK----AGE--V  124 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~-~~v~~~~~~~~~~~~~l~----~GD--v  124 (205)
                      ||..++....+..+-+ ..++....-|.++.....|.-.++.|+.+-..|. +++.+..++++....+|.    +|+  .
T Consensus        19 GG~f~et~rs~~~~~R-~~~T~IYyLL~~~~~s~~Hrv~~sDEiw~~~~G~pL~l~~~~~~g~~~~~~lG~~~~~ge~~q   97 (140)
T d1znpa1          19 GGFYHQTFRDKAGGER-GHSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEGERPQ   97 (140)
T ss_dssp             SSEEEEEEECSSSTTT-CSCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTTEESE
T ss_pred             CceEEEEEECCCCCCC-cceEEEEEEcCCCCCCccccccCCCeEEEEcCCceEEEEEecCCCCEEEEEecCCcccCCcee
Confidence            8888877665543322 2356666678888766555433567999999998 778878777765555554    566  7


Q ss_pred             EEeCCCCeeEEEecCC
Q 042644          125 CVFPRGLLHFGFNVGY  140 (205)
Q Consensus       125 ~~vP~G~~H~~~N~g~  140 (205)
                      ++||+|.+...+..|+
T Consensus        98 ~vVp~g~W~aa~~~g~  113 (140)
T d1znpa1          98 VIVPANCWQSAESLGD  113 (140)
T ss_dssp             EEECTTCEEEEEESSS
T ss_pred             EEECCCeEEeeeECCC
Confidence            8999999998876654

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.069  Score=42.69  Aligned_cols=91  Identities=18%  Similarity=0.197  Sum_probs=60.6

Q ss_pred             CeeEEEeccCCCCCCCccc--eEEEEEEEcCCcccCCccCCCCCeEE-EEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644           52 YSSLTLVTAADFPGLNTLG--LSVARTDLDVDGMVVPHTHPRASEML-FVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP  128 (205)
Q Consensus        52 g~~~~~~~~~~~P~l~~~g--is~~~~~l~pgg~~~pH~Hp~a~Ei~-yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP  128 (205)
                      |..+..+...  +.+...+  +-+....+.++.-+++|=|. ..|++ ||++|.. +.--|+-|.  ..++++||+-.+-
T Consensus        19 G~~v~R~~~~--~~~~~~~Pf~~~d~~~~~~~~gf~~HPH~-g~e~vTy~~~G~~-~~H~Ds~G~--~~~i~~G~vq~mt   92 (288)
T d1j1la_          19 GARVRRSIGR--PELKNLDPFLLFDEFKGGRPGGFPDHPHR-GFETVSYLLEGGS-MAHEDFCGH--TGKMNPGDLQWMT   92 (288)
T ss_dssp             TEEEEECTTS--TTCCCCTTEEEEEEEEECTTCBEEEEEEB-SEEEEEEECSSSC-EEEEETTSC--EEEECTTCEEEEE
T ss_pred             CEEEEEeCCC--CCccccCceEEeEcCcCCCCCCCCCCCcC-CeEEEEEEEeCCe-EEEecCCCC--eeEecCCCEEEEe
Confidence            5566554332  2233233  44456677888888999994 45555 8899853 223455455  5899999988886


Q ss_pred             C--CCeeEEEecCCccEEEEEE
Q 042644          129 R--GLLHFGFNVGYEFATVFSV  148 (205)
Q Consensus       129 ~--G~~H~~~N~g~~~a~~l~~  148 (205)
                      +  |..|.-.|..+++++++=+
T Consensus        93 AG~Gi~HsE~~~~~~~~~~lQi  114 (288)
T d1j1la_          93 AGRGILHAEMPCSEEPAHGLQL  114 (288)
T ss_dssp             CTTCEEEEEEECSSSCEEEEEE
T ss_pred             cccceEecccccccccceeeEE
Confidence            5  6899999998888766543

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=94.42  E-value=0.065  Score=45.64  Aligned_cols=77  Identities=13%  Similarity=0.033  Sum_probs=51.7

Q ss_pred             ceEEEEEEEcCCccc--CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC---ccEE
Q 042644           70 GLSVARTDLDVDGMV--VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY---EFAT  144 (205)
Q Consensus        70 gis~~~~~l~pgg~~--~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~---~~a~  144 (205)
                      .+++.++++.++...  ..+.. +..+|++|++|++++.....++.  ...|++||++++|+|..-.+...+.   +.++
T Consensus       356 ~F~v~~~~l~~~~~~~~~~~~~-~~~~Illv~~G~~~i~~~~~~~~--~~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~  432 (440)
T d1pmia_         356 EFSVLQTIFDKSKGGKQVIEGL-NGPSIVIATNGKGTIQITGDDST--KQKIDTGYVFFVAPGSSIELTADSANQDQDFT  432 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEECCC-SSCEEEEEEESEEEEEETTCGGG--CEEEETTCEEEECTTCCEEEEECSSCCSSCCE
T ss_pred             ceEEEEEEECCCCCceeeecCC-CCcEEEEEEcCEEEEEecCCCcc--EEEeCCceEEEEcCCceEEEEeecCCCCCceE
Confidence            468888888776432  22222 45799999999999875322222  5899999999999998766666553   3455


Q ss_pred             EEEEE
Q 042644          145 VFSVL  149 (205)
Q Consensus       145 ~l~~~  149 (205)
                      ++-+|
T Consensus       433 ~~rA~  437 (440)
T d1pmia_         433 TYRAF  437 (440)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            54443

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.74  E-value=0.16  Score=41.00  Aligned_cols=59  Identities=17%  Similarity=0.283  Sum_probs=42.1

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF  136 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~  136 (205)
                      -+++.++++.......   ..+...+++|++|++++..   ++.  +..|++||.++||++.-.+..
T Consensus       246 ~F~~~~~~~~~~~~~~---~~~~~~il~vi~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i  304 (315)
T d1qwra_         246 YFSVYKWDINGEAEMA---QDESFLICSVIEGSGLLKY---EDK--TCPLKKGDHFILPAQMPDFTI  304 (315)
T ss_dssp             SCEEEEEEEEEEEEEC---CCSSCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCCCEEE
T ss_pred             cEEEEEEEecCcEEec---cCCCcEEEEEEeCeEEEEE---CCE--EEEEecCcEEEEECCCCCEEE
Confidence            4677787776332222   2245789999999998764   344  578999999999998766544

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.41  Score=37.89  Aligned_cols=83  Identities=11%  Similarity=-0.005  Sum_probs=59.3

Q ss_pred             CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccE
Q 042644           64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA  143 (205)
Q Consensus        64 P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a  143 (205)
                      |......+.+..+.+++|+....-......-++||++|++.+.-   ...  ...+.+++++++..|..=.+.+.+.+++
T Consensus       160 pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g---~~~--~~~l~~~~~~~l~~gd~~~i~~~~~~~a  234 (288)
T d1j1la_         160 KVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGP---DDA--QQKIEPHHTAVLGEGDSVQVENKDPKRS  234 (288)
T ss_dssp             CCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESC---TTS--CEEECTTEEEEECSCSEEEEECCSSSCE
T ss_pred             ccccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecC---ccc--ceeecCceEEEEcCCCeEEEEeCCCCCC
Confidence            55555578999999999997543333344578999999998641   111  3678899998888887666777788888


Q ss_pred             EEEEEEeC
Q 042644          144 TVFSVLNS  151 (205)
Q Consensus       144 ~~l~~~~s  151 (205)
                      .++.+-..
T Consensus       235 ~~LLl~G~  242 (288)
T d1j1la_         235 HFVLIAGE  242 (288)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEECC
Confidence            77665433

>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein SO0799
species: Shewanella oneidensis [TaxId: 70863]

Probab=93.29  E-value=1  Score=32.77  Aligned_cols=129  Identities=13%  Similarity=0.073  Sum_probs=81.8

Q ss_pred             CeeEEEeccCCCC-CCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecE-EEEEEEeCCCeEEEEEEc----CCCE-
Q 042644           52 YSSLTLVTAADFP-GLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGV-VIAGFVDTNRQVFQVMLK----AGEV-  124 (205)
Q Consensus        52 g~~~~~~~~~~~P-~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~-~~v~~~~~~~~~~~~~l~----~GDv-  124 (205)
                      ||+.++....... .-.....+....-|.++.....|.- ++.|+.+-..|. +++.+++++++.....|.    .|+. 
T Consensus        19 GG~fret~rs~~~~~~~R~~~T~IY~LL~~~~~S~~Hrv-~sdEiw~~~~G~pL~l~~~~~~g~~~~~~lG~d~~~ge~~   97 (158)
T d1yuda1          19 GGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRL-TADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERP   97 (158)
T ss_dssp             SSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEEC-SSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTEES
T ss_pred             CceEEEEEeCCCCCCCCCcceEEEEEEecCCCCCceEEe-cCCeEEEEecCCCEEEEEecCCCCeEEeeeccCcCcCcee
Confidence            8888777654321 1122345777777888888888877 689999999998 678888888876666653    5664 


Q ss_pred             -EEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHHHHhh
Q 042644          125 -CVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSE  189 (205)
Q Consensus       125 -~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~l~  189 (205)
                       ++||+|.+....- ......+++..  -.||+-.-   =|.  -.+.+.|.+.|---++.++++-
T Consensus        98 q~vVp~g~w~~a~~-~~g~~sLvsct--VaPGFdf~---Dfe--l~~~~~L~~~~P~~~~~I~~lt  155 (158)
T d1yuda1          98 QFLVPKGCIFGSAM-NQDGFSLVGCM--VSPGFTFD---DFE--LFSQEALLAMYPQHKAVVQKLS  155 (158)
T ss_dssp             CEEECTTCEEEEEE-SSSSEEEEEEE--ESSCCCGG---GCC--BCBHHHHHHSCCTTHHHHTTSC
T ss_pred             EEEEcCCCEEEEEE-cCCCcEEEEEE--EcCCccch---hcc--ccCHHHHHHHCchhHHHHHHHc
Confidence             8999998665432 23333333322  23554221   121  1246667777877777776654

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.58  E-value=0.1  Score=42.32  Aligned_cols=57  Identities=23%  Similarity=0.397  Sum_probs=40.0

Q ss_pred             cCCcccCCccCCC-------------CCeEEEEEe----cEEEEEEEeCC----------C----eEEEEEEcCCCEEEe
Q 042644           79 DVDGMVVPHTHPR-------------ASEMLFVFK----GVVIAGFVDTN----------R----QVFQVMLKAGEVCVF  127 (205)
Q Consensus        79 ~pgg~~~pH~Hp~-------------a~Ei~yVl~----G~~~v~~~~~~----------~----~~~~~~l~~GDv~~v  127 (205)
                      ....-++.|.||+             -+|..|+++    .++.+++-..+          +    =.....+++||++++
T Consensus        87 da~~~LSiQvHP~~~~A~~~~~~~~gK~E~wyil~a~~~a~~~~G~~~~~~~e~~~~i~~~~~~~lln~~~l~~Gd~~~i  166 (315)
T d1qwra_          87 DVKEDTSIKVHPDDYYAGENEEGELGKTECWYIIDCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYYV  166 (315)
T ss_dssp             EESSCCCEEECCCHHHHHHHTTTCCCCCEEEEEEEECTTCEEEEEECCSSHHHHHHHHHTTCHHHHEEEEECCTTCEEEE
T ss_pred             ccCCCcccccCCCHHHHHhhccccCCCCceEEEEEcCCCcEEEEcCCCCCHHHHHHHHHcCCHHHhCcEEEcccCCEEEe
Confidence            3345555666663             579999996    45666663322          1    123689999999999


Q ss_pred             CCCCeeEE
Q 042644          128 PRGLLHFG  135 (205)
Q Consensus       128 P~G~~H~~  135 (205)
                      |+|.+|..
T Consensus       167 paG~~HA~  174 (315)
T d1qwra_         167 PSGTLHAL  174 (315)
T ss_dssp             CTTCCEEE
T ss_pred             CCCCeeEe
Confidence            99999997

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.6  Score=31.98  Aligned_cols=61  Identities=23%  Similarity=0.269  Sum_probs=42.6

Q ss_pred             CCcccCCcc--CCCC--CeEEEEEecEEEEE-EEeCCC-e-EEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644           80 VDGMVVPHT--HPRA--SEMLFVFKGVVIAG-FVDTNR-Q-VFQVMLKAGEVCVFPRGLLHFGFNVGY  140 (205)
Q Consensus        80 pgg~~~pH~--Hp~a--~Ei~yVl~G~~~v~-~~~~~~-~-~~~~~l~~GDv~~vP~G~~H~~~N~g~  140 (205)
                      |-++...|.  ...+  ...+.|++|+++.. +.+++. . .....+++|+.-++|+..+|.+.-.++
T Consensus        23 P~~ll~~H~~~nTK~Gvwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsd   90 (109)
T d3bb6a1          23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTD   90 (109)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESST
T ss_pred             hHHHHhhccCCCcCCcEEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCC
Confidence            446667773  2333  45568999999874 433222 1 235789999999999999999987654

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=92.03  E-value=0.32  Score=32.66  Aligned_cols=64  Identities=19%  Similarity=0.235  Sum_probs=43.2

Q ss_pred             CcccCCccCCCCC--eEEEEEecEEEEE-EEeCCC--eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           81 DGMVVPHTHPRAS--EMLFVFKGVVIAG-FVDTNR--QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        81 gg~~~pH~Hp~a~--Ei~yVl~G~~~v~-~~~~~~--~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      -++...|.- .+-  ..+.|++|++... +.+.++  ......+.+|+.-++|+..+|.+.-  ++++.+..
T Consensus        22 ~~ll~~HnT-K~Gvwg~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~--sdD~~f~v   90 (96)
T d3dl3a1          22 EALLTHHNT-AVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIEL--SDDAQFNI   90 (96)
T ss_dssp             HHHHSSBCC-CTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEE--CTTCEEEE
T ss_pred             HHHHhhcCC-CCceEEEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEe--CCCeEEEE
Confidence            345556644 333  4557999999874 444333  1236788999999999999999984  45555544

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=91.65  E-value=0.35  Score=32.26  Aligned_cols=69  Identities=13%  Similarity=-0.032  Sum_probs=48.4

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           71 LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        71 is~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      -....-.+.||.   -+.-..+.|+.-|++|++.+.+-   |...+.++++|+.|-||++...-++-  .++...++
T Consensus        22 ~~kTlGVm~pGe---Y~F~T~~~E~MeivsG~l~V~lp---g~~ew~~~~~G~sF~Vpans~F~ikv--~~~~~Y~C   90 (93)
T d2oyza1          22 QDVSVGVMLPGE---YTFGTQAPERMTVVKGALVVKRV---GEADWTTYSSGESFDVEGNSSFELQV--KDATAYLC   90 (93)
T ss_dssp             EEEEEEEECSEE---EEEEESSCEEEEEEESEEEEEET---TCSSCEEEETTCEEEECSSEEEEEEE--SSCEEEEE
T ss_pred             CeeEEEEEeccE---EEEcCCCCEEEEEEeeEEEEECC---CCcccEEeCCCCeEEECCCCEEEEEE--CcceeeEE
Confidence            334444556764   34455788999999999999873   33247999999999999998777764  34444443

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=90.56  E-value=0.77  Score=36.42  Aligned_cols=78  Identities=22%  Similarity=0.336  Sum_probs=53.1

Q ss_pred             ceEEEEEEEcCCcc---cCCccCCCCCeEEEEE---ecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccE
Q 042644           70 GLSVARTDLDVDGM---VVPHTHPRASEMLFVF---KGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA  143 (205)
Q Consensus        70 gis~~~~~l~pgg~---~~pH~Hp~a~Ei~yVl---~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a  143 (205)
                      .+-+..-.+.||+.   .|||.|.+..|..|-.   ++...+.+..+.++.....++-+|+++.|.=.+|..  .|....
T Consensus       176 qLlmG~tvl~PGg~WSSyPpHkHDRrmEeyyYF~l~~~~~Vfh~mGep~etrhivv~neqaVisP~wsih~g--~gt~~y  253 (277)
T d1xrua1         176 QLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFHMMGQPQETRHIVMHNEQAVISPSWSIHSG--VGTKAY  253 (277)
T ss_dssp             SCEEEEEEECTTCCEESCSEEECTTEEEEEEEESCCTTCCEEEEEEETTEEEEEEECSSEEEEECTTCEEEE--EESSCC
T ss_pred             eEEEEEEEEcCCCccCCCCCccCCCCcceEEEEEcCCCceEEEecCCCCceeEEEEECCcEEECCCCcccCC--CCCcce
Confidence            46666677889983   5999997766666544   333333444434555568899999999999999996  456666


Q ss_pred             EEEEEE
Q 042644          144 TVFSVL  149 (205)
Q Consensus       144 ~~l~~~  149 (205)
                      .+|...
T Consensus       254 ~fiW~m  259 (277)
T d1xrua1         254 TFIWGM  259 (277)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555544

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.14  E-value=1.1  Score=35.13  Aligned_cols=76  Identities=20%  Similarity=0.242  Sum_probs=43.5

Q ss_pred             ceEEEEEEEcCCc---ccCCccCCCCCeEEEEE---ecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccE
Q 042644           70 GLSVARTDLDVDG---MVVPHTHPRASEMLFVF---KGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA  143 (205)
Q Consensus        70 gis~~~~~l~pgg---~~~pH~Hp~a~Ei~yVl---~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a  143 (205)
                      .+-+..-.+.||+   ..|||.|.+..|..|-.   ++...+.+..+.++.....++-+|.++.|+=.+|..  .|...-
T Consensus       174 qLlmG~tvl~pGg~WsS~PpH~HDRrmE~YyYFdl~e~~~V~H~mGep~eTrhivv~n~qaVisP~wsiHsg--~gt~~Y  251 (260)
T d1ywka1         174 QLQMGYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMSNEQAAISPSWSIHSG--VGTSNY  251 (260)
T ss_dssp             SCEEEEEEECTTCCCCC--------CEEEEEEESCCTTCCEEEEESSTTSCEEEEECTTEEEEECTTSCCCE--EESSCC
T ss_pred             ceEEEEEEEcCCCccCCcCCcccCCCCceEEEEEcCCCceEEEeeCCCCceEEEEEECCcEEEcCCccccCC--CCccCc
Confidence            4566667789998   35999998777776644   333333444333343467889999999999999975  355554


Q ss_pred             EEEE
Q 042644          144 TVFS  147 (205)
Q Consensus       144 ~~l~  147 (205)
                      .|+.
T Consensus       252 ~FiW  255 (260)
T d1ywka1         252 SFIW  255 (260)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=90.09  E-value=0.66  Score=35.37  Aligned_cols=69  Identities=16%  Similarity=-0.015  Sum_probs=46.0

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644           68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS  147 (205)
Q Consensus        68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~  147 (205)
                      ...+.+..+.+.+|+....-..+...-++||++|++.+     ++    ..|.+||.+++-.+..-.+..  .++++++.
T Consensus       157 ~~~~~l~~~~l~~g~~~~~~l~~~~~~~lyvi~G~l~i-----~g----~~l~~gd~~~l~~~~~l~i~A--~~~a~~LL  225 (231)
T d1tq5a1         157 HQDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTI-----NG----VKASTSDGLAIWDEQAISIHA--DSDSEVLL  225 (231)
T ss_dssp             SSSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEE-----TT----EEEETTCEEEEESCSCEEEEE--SSSEEEEE
T ss_pred             ccccEEEEEEecCCceEEEcccCCccEEEEEEeeEEEE-----CC----EEccCCCeEEECCCCeEEEEE--CCCCEEEE
Confidence            44688899999998855333333334588999999985     23    468999988876665444544  34555543

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=88.74  E-value=1.8  Score=29.32  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=36.2

Q ss_pred             EEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCC
Q 042644           76 TDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR  129 (205)
Q Consensus        76 ~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~  129 (205)
                      -.+++|..+.. ---....+++|++|.+.+...+++++..-..+.+||++-.+.
T Consensus        25 ~~~~kG~~i~~-~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~~   77 (132)
T d1ft9a2          25 KIHAKGSLVCT-GEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHS   77 (132)
T ss_dssp             EEECTTCEEEC-TTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESCS
T ss_pred             EEecCCcEEEC-CCCCCCEEEEEEeCeEeeeccccccceeeccccccccccccc
Confidence            34566664422 222456899999999999877755455667889999875543

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=88.40  E-value=0.28  Score=39.36  Aligned_cols=75  Identities=16%  Similarity=0.230  Sum_probs=47.9

Q ss_pred             ceEEEEEEEcCCcccCCccCCCC--------CeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCc
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRA--------SEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYE  141 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a--------~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~  141 (205)
                      .+.+.++.+.||+.+.||.=...        .-+-+.+...-.+.+.. +++  ...+++|+++++.-+..|+..|.|++
T Consensus        90 ~~r~~rirL~pGg~I~pH~D~~~~~~~~~~~~RiHIPL~Tn~~~~f~v-~~~--~~~m~~Ge~w~~D~~~~H~v~N~sd~  166 (290)
T d1e5ra_          90 HLQMARSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFHSN-EDT--VIHMRPGEIWFLDAATVHSAVNFSEI  166 (290)
T ss_dssp             SEEEEEEEEEESEEEEEECCC--------CBCCEEEECSCCTTEEEEE-TTE--EECCCTTEEEECCTTSCEEEEESSSS
T ss_pred             eeeeeeeeecCCcEecCCcCCccccccCCceEEEEEEeecCCceEEEE-CCE--EEECCCCeEEEEcCCCeEEEECCCCC
Confidence            46778888899999999853211        01222222111111222 233  68899999999999999999999986


Q ss_pred             c-EEEEE
Q 042644          142 F-ATVFS  147 (205)
Q Consensus       142 ~-a~~l~  147 (205)
                      + .+++.
T Consensus       167 dRIHLVi  173 (290)
T d1e5ra_         167 SRQSLCV  173 (290)
T ss_dssp             CCCEEEE
T ss_pred             ceEEEEE
Confidence            5 44443

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.28  E-value=1.1  Score=35.75  Aligned_cols=58  Identities=16%  Similarity=0.295  Sum_probs=42.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644           70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF  136 (205)
Q Consensus        70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~  136 (205)
                      -+++.++++........  . ...++++|++|++.+.    +++  +..|++||.+++|++.-.+..
T Consensus       228 ~F~~~~~~~~~~~~~~~--~-~~~~il~~~~G~~~i~----~~~--~~~l~~G~s~~iPA~~~~~~i  285 (299)
T d1zx5a1         228 NFGLEVVDVTGTAEIKT--G-GVMNILYAAEGYFILR----GKE--TADLHRGYSCLVPASTDSFTV  285 (299)
T ss_dssp             SEEEEEEEEEEEEEEEC--C-SBCEEEEEEESCEEEE----SSS--EEEECTTCEEEECTTCCEEEE
T ss_pred             ceEEEEEEecCcEEecc--C-CceEEEEEeccEEEEe----CCC--EEEEcCCcEEEEecCCccEEE
Confidence            47777877764433332  2 4568999999998753    333  578999999999998877654

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=86.88  E-value=3.2  Score=28.13  Aligned_cols=48  Identities=10%  Similarity=0.196  Sum_probs=33.6

Q ss_pred             EEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEE
Q 042644           77 DLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVC  125 (205)
Q Consensus        77 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~  125 (205)
                      ++.+|..+-..-- ....+++|++|.+++...+++|+ ..-..+++||++
T Consensus        28 ~y~kg~~i~~~g~-~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~   76 (139)
T d3e5ua2          28 DFAKGSAVIMPGE-EITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLI   76 (139)
T ss_dssp             EECTTCEEECTTC-CCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             EECCCCEEEeCCC-CCCEEEEEEeccceEEEeeccccccceeecccccee
Confidence            4555554422222 45679999999999988887765 345688999986

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.46  E-value=1.1  Score=30.01  Aligned_cols=48  Identities=15%  Similarity=0.304  Sum_probs=33.7

Q ss_pred             EEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEE
Q 042644           77 DLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVC  125 (205)
Q Consensus        77 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~  125 (205)
                      .+++|..+--. --....+.+|++|.+.+...+++|+ .....+++||++
T Consensus        17 ~~~~g~~i~~~-g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~   65 (132)
T d1i5za2          17 KYPSKSTLIHQ-GEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFI   65 (132)
T ss_dssp             EECTTCEEECT-TSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEE
T ss_pred             EECcCCEEEcC-CCCCCEEEEEEEccceeeeccccchhhhhhhhCccccc
Confidence            45666544222 2234688999999999998887765 345678999987

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.38  E-value=1.4  Score=29.92  Aligned_cols=49  Identities=16%  Similarity=0.323  Sum_probs=34.4

Q ss_pred             EEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEE
Q 042644           76 TDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVC  125 (205)
Q Consensus        76 ~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~  125 (205)
                      ..+++|..+---=- .+..+++|++|++.+...+.+|+ .....+.+||++
T Consensus        15 ~~~~~g~~i~~~g~-~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~   64 (134)
T d2oz6a2          15 RRYTAKSTIIYAGD-RCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF   64 (134)
T ss_dssp             EEECTTCEEECTTS-BCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             EEECCCCEEEeCCC-cCCEEEEEEEcccceeeeecccccceeeeccCCCcc
Confidence            45666664422212 34689999999999998887765 445678999998

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.33  E-value=2.2  Score=28.84  Aligned_cols=53  Identities=4%  Similarity=-0.100  Sum_probs=36.9

Q ss_pred             EEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEE
Q 042644           72 SVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVC  125 (205)
Q Consensus        72 s~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~  125 (205)
                      .+....+.+|..+--.-. ....+++|++|.+.+.....+.......+.+|+.+
T Consensus        38 ~~~~~~~~~g~~I~~~G~-~~~~~y~I~~G~v~v~~~~~~~~~~~~~l~~g~~f   90 (136)
T d1cx4a1          38 AMFEKLVKEGEHVIDQGD-DGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSF   90 (136)
T ss_dssp             HCEEEEECTTCEEECTTS-CCCEEEEEEECEEEEEEEETTEEEEEEEEESSCEE
T ss_pred             ceEEEEECCCCEEEECCC-cchhhhhhhhheeEEeeccccceeeeeccCCcccc
Confidence            345677888887665555 45789999999999865543333334578888877

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=83.15  E-value=1.1  Score=30.64  Aligned_cols=50  Identities=8%  Similarity=0.147  Sum_probs=32.1

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEE
Q 042644           75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVC  125 (205)
Q Consensus        75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~  125 (205)
                      ...+++|..+-..-= .+..+++|++|.+.+...+++|+ .....+++||++
T Consensus        26 ~~~~~~g~~l~~~g~-~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~   76 (142)
T d2gaua2          26 PFPCKKASTVFSEGD-IPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFF   76 (142)
T ss_dssp             EEEECTTCEEECTTC-CCCEEEEEEESCEEEEC-----CCCEEEEECTTCEE
T ss_pred             EEEECCCCEEEeCCC-ccceEEEEEecceeeEeeccccceeeeecccccchh
Confidence            456777776533333 35789999999999988776665 345678999975

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.64  E-value=0.45  Score=38.06  Aligned_cols=57  Identities=21%  Similarity=0.300  Sum_probs=37.9

Q ss_pred             EcCCcccCCccCCC-------------CCeEEEEEec-EEEEEEEeCC-----------C------eEEEEEEcCCCEEE
Q 042644           78 LDVDGMVVPHTHPR-------------ASEMLFVFKG-VVIAGFVDTN-----------R------QVFQVMLKAGEVCV  126 (205)
Q Consensus        78 l~pgg~~~pH~Hp~-------------a~Ei~yVl~G-~~~v~~~~~~-----------~------~~~~~~l~~GDv~~  126 (205)
                      |..+.-++.+.||+             -+|+.|+++. ++.+++-...           +      -+....+++||+++
T Consensus        89 Lda~~~LSiQVHPd~~~A~~~~~~~~~k~E~~~~l~~~~~~~Gf~~~~~~e~l~~~i~~~~~~~~~lln~v~v~~Gd~i~  168 (299)
T d1zx5a1          89 IDAASPTQVHVHPSDKAAESLGEAEGGVESAWLVFNKGKAYAGFKEDVKIEELEEKLKEEDFDFKTLLNTFETTPYDTFV  168 (299)
T ss_dssp             EEECSCCCCEECCCHHHHHHTTCSSCCCCEEEEECSSCEEEEEESSCCCHHHHHHHHTSSSCCGGGGEEEEECCTTCEEE
T ss_pred             eccCCCcceeeCCCHHHHhhhcccCCCcEEEEEEcCCcceEeeccCCCCHHHHHHHHhccchhhHhhccEEEcccCCEEE
Confidence            33455555666655             2678888743 4555653221           0      13468999999999


Q ss_pred             eCCCCeeE
Q 042644          127 FPRGLLHF  134 (205)
Q Consensus       127 vP~G~~H~  134 (205)
                      ||+|.+|.
T Consensus       169 IpaGtvHA  176 (299)
T d1zx5a1         169 IRPGIPHA  176 (299)
T ss_dssp             ECTTCCEE
T ss_pred             eCCCCcEE
Confidence            99999999