Citrus Sinensis ID: 042660

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MTLHHFSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEcccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccEEEccccccccccccccccccccEEEccccEEEEcccHHHHHccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEcccccEEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccHHcccccccEEEccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccc
Coil and Loop (DISEMBL)
MTLHHFSVAFFFFSLHLLFVVVLGSESELGSLIefkkgiqddplgrihstwnitslpdtkscpvswtgvscdpesgsvnlslsgnnftgrivpalgsisslqyldlsnnkfigpipgritdlwglnylnlsmngfkggfpgnlrnlqqlKVLDLRKNKLWGDIGGIMSelknvefvdlsfnrfhgglgvgadnvssiantnlevldlgdngitgelpsfgmlpnlkvlrlgsnqlfgmipeellesvipiqeldlsgngft
Flexible Loop (DISEMBL)
MTLHHFSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHStwnitslpdtkscPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELlesvipiqeldlsgngft
Low Complexity Region (SEG)
MTlhhfsvaffffslhllfvvvlGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPEsgsvnlslsgnnFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT
Disordered region (IsUnstruct)
***HHFSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE*********
Disordered Region (DISOPRED)
***HHFSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT
Disordered Region (DISEMBL)
MTLHHFSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT
Disordered Region (DISPRO)
MTLHHFSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG**F*
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTLHHFSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q0WR59	1048	Probable inactive recepto	yes	no	0.908	0.226	0.513	7e-76
Q9FL28	1173	LRR receptor-like serine/	no	no	0.858	0.190	0.336	2e-25
C0LGQ9	1037	Probable LRR receptor-lik	no	no	0.639	0.161	0.406	1e-23
C0LGS3	768	Probable LRR receptor-lik	no	no	0.931	0.316	0.354	2e-23
Q42371	976	LRR receptor-like serine/	no	no	0.919	0.245	0.323	7e-22
Q9LT96	946	Probable leucine-rich rep	no	no	0.865	0.238	0.301	8e-21
C0LGT6	1031	LRR receptor-like serine/	no	no	0.931	0.235	0.286	8e-21
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.862	0.180	0.318	2e-20
O82318	960	Probably inactive leucine	no	no	0.831	0.226	0.377	2e-20
Q9C9N5	685	Probable inactive leucine	no	no	0.839	0.319	0.331	7e-20

>sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2

 Score =  283 bits (725), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 148/288 (51%), Positives = 194/288 (67%), Gaps = 51/288 (17%)

Query: 25  SESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSV------ 78
           +E+EL SL+EF+KGI+D+   +  S  + +SL D  +CP  W G+SCDPE+GS+      
Sbjct: 23  TETELRSLLEFRKGIRDETSHQRISWSDTSSLTDPSTCPNDWPGISCDPETGSIIAINLD 82

Query: 79  --------------------NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGR 118
                               NLSLSGN+F+GR+VP+LG ISSLQ+LDLS+N F GPIPGR
Sbjct: 83  RRGLSGELKFSTLSGLTRLRNLSLSGNSFSGRVVPSLGGISSLQHLDLSDNGFYGPIPGR 142

Query: 119 ITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDL 178
           I++LW LN+LNLS N F+GGFP   RNLQQL+ LDL KN++WGD+G I +ELKNVEFVDL
Sbjct: 143 ISELWSLNHLNLSSNKFEGGFPSGFRNLQQLRSLDLHKNEIWGDVGEIFTELKNVEFVDL 202

Query: 179 SFNRFHGGLGVGADNVSSIANT-------------------------NLEVLDLGDNGIT 213
           S NRF+GGL +  +N+SSI+NT                         NLE++DL +N I 
Sbjct: 203 SCNRFNGGLSLPMENISSISNTLRHLNLSHNALNGKFFSEESIGSFKNLEIVDLENNQIN 262

Query: 214 GELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           GELP FG  P+L++L+L  N+LFG++P+ELL+S IP+ ELDLS NGFT
Sbjct: 263 GELPHFGSQPSLRILKLARNELFGLVPQELLQSSIPLLELDLSRNGFT 310

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 121/238 (50%), Gaps = 14/238 (5%)

Query: 6   FSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVS 65
            ++ FFFF + L        E E+ +L  FK GI +DPLG + S W I  +   + C  +
Sbjct: 11  LTLTFFFFGIAL---AKQSFEPEIEALKSFKNGISNDPLG-VLSDWTI--IGSLRHC--N 62

Query: 66  WTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGL 125
           WTG++CD     V++SL      G + PA+ +++ LQ LDL++N F G IP  I  L  L
Sbjct: 63  WTGITCDSTGHVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTEL 122

Query: 126 NYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG 185
           N L L +N F G  P  +  L+ +  LDLR N L GD+   + +  ++  +   +N   G
Sbjct: 123 NQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTG 182

Query: 186 GLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEE 242
            +     ++      +L++     N +TG +P S G L NL  L L  NQL G IP +
Sbjct: 183 KIPECLGDL-----VHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD 235

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 103/187 (55%), Gaps = 20/187 (10%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           NLSLSGNNF+G I  ++G + SLQ LD+S+N   GP+P  +T L  L YLNLS NGF G 
Sbjct: 130 NLSLSGNNFSGEIPESMGGLISLQSLDMSSNSLSGPLPKSLTRLNDLLYLNLSSNGFTGK 189

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVS-SI 197
            P     +  L+VLDL  N + G++ G    L N  +VD+S NR     G     VS SI
Sbjct: 190 MPRGFELISSLEVLDLHGNSIDGNLDGEFFLLTNASYVDISGNRLVTTSGKLLPGVSESI 249

Query: 198 AN-------------------TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM 238
            +                    NL+VLDL  N ++GELP F  + +L+VL+L +N+  G 
Sbjct: 250 KHLNLSHNQLEGSLTSGFQLFQNLKVLDLSYNMLSGELPGFNYVYDLEVLKLSNNRFSGS 309

Query: 239 IPEELLE 245
           +P  LL+
Sbjct: 310 LPNNLLK 316

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS3|Y4372_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 128/262 (48%), Gaps = 19/262 (7%)

Query: 1   MTLHHFSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTK 60
           M +   SV FFFF   +L    L S+  +  L++FK  +  DPL  +  TWN        
Sbjct: 1   MRMELISVIFFFF-CSVLSSSALNSDGLV--LMKFKSSVLVDPLSLLQ-TWNYK-----H 51

Query: 61  SCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRIT 120
             P SW G+SC+ +S  + LSL  +   G I   LGS+ +LQ LDLSNN F GP+P    
Sbjct: 52  ESPCSWRGISCNNDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFF 111

Query: 121 DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180
           +   L +L+LS N   G  P  + +L  L  L+L  N L G +   ++ L+N+  V L  
Sbjct: 112 NARELRFLDLSSNMISGEIPSAIGDLHNLLTLNLSDNALAGKLPTNLASLRNLTVVSLEN 171

Query: 181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL-PSFGMLPNLKVLRLGSNQLFGMI 239
           N F G +  G   V        E LDL  N I G L P FG   +L+ L +  NQ+ G I
Sbjct: 172 NYFSGEIPGGWRVV--------EFLDLSSNLINGSLPPDFGGY-SLQYLNVSFNQISGEI 222

Query: 240 PEELLESVIPIQELDLSGNGFT 261
           P E+  +      +DLS N  T
Sbjct: 223 PPEIGVNFPRNVTVDLSFNNLT 244

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  104 bits (259), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 134/272 (49%), Gaps = 32/272 (11%)

Query: 11  FFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVS 70
           F F L L+  V   +  E  +L+E KK  +D  +  +   W  T+ P +  C   W GVS
Sbjct: 12  FLFCLSLVATV---TSEEGATLLEIKKSFKD--VNNVLYDW--TTSPSSDYC--VWRGVS 62

Query: 71  CDPES-GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLN 129
           C+  +   V L+LS  N  G I PA+G + SL  +DL  N+  G IP  I D   L  L+
Sbjct: 63  CENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLD 122

Query: 130 LSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGG--- 186
           LS N   G  P ++  L+QL+ L L+ N+L G I   +S++ N++ +DL+ N+  G    
Sbjct: 123 LSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPR 182

Query: 187 ----------LGVGADN-VSSIAN-----TNLEVLDLGDNGITGELP-SFGMLPNLKVLR 229
                     LG+  +N V +I+      T L   D+ +N +TG +P + G     +VL 
Sbjct: 183 LIYWNEVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLD 242

Query: 230 LGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           L  NQL G IP ++    + +  L L GN  +
Sbjct: 243 LSYNQLTGEIPFDI--GFLQVATLSLQGNQLS 272

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LT96|Y5977_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1

 Score =  100 bits (250), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 128/272 (47%), Gaps = 46/272 (16%)

Query: 28  ELGSLIEFKKGIQDDPLGRIHSTWNI--TSLPDTKSCPVSWTGVSCDPESGSVNLSLSGN 85
           ++ S+  F  G     L  + + W+    S   +  C   W G++C+ ++  V++SL+  
Sbjct: 19  QIYSVYAFTDGSDFTALQALKNEWDTLSKSWKSSDPCGTEWVGITCNNDNRVVSISLTNR 78

Query: 86  NFTGRIVPALGSISSLQYLDLSNN-KFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR 144
           N  G++   + ++S LQ LDL+ N +  GP+P  I +L  L +L+L    F G  P ++ 
Sbjct: 79  NLKGKLPTEISTLSELQTLDLTGNPELSGPLPANIGNLRKLTFLSLMGCAFNGPIPDSIG 138

Query: 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV 204
           NL+QL  L L  NK  G I   M  L  + + D++ N+  G L V +D  S      L  
Sbjct: 139 NLEQLTRLSLNLNKFSGTIPASMGRLSKLYWFDIADNQLEGKLPV-SDGAS------LPG 191

Query: 205 LDL---------GDNGITGELP--------------------------SFGMLPNLKVLR 229
           LD+         G+N ++GE+P                          S G++ NL VLR
Sbjct: 192 LDMLLQTGHFHFGNNKLSGEIPEKLFSSEMTLLHVLFDGNQFTGSIPESLGLVQNLTVLR 251

Query: 230 LGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           L  N+L G IP   L ++  +QEL LS N FT
Sbjct: 252 LDRNRLSGDIPSS-LNNLTNLQELHLSDNKFT 282

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  100 bits (250), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 129/265 (48%), Gaps = 22/265 (8%)

Query: 6   FSVAFFFFSLHLLFVVVL------GSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDT 59
            S +  F +L LL  V +       +E+++ +L+EFK  + ++    + ++WN       
Sbjct: 3   LSFSLVFNALTLLLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWN------- 55

Query: 60  KSCP-VSWTGVSCDPESGSV-NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPG 117
            S P  +W GV+C      V +L+L G   TG I P++G++S L+ L+L++N F   IP 
Sbjct: 56  HSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQ 115

Query: 118 RITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVD 177
           ++  L+ L YLN+S N  +G  P +L N  +L  +DL  N L   +   +  L  +  +D
Sbjct: 116 KVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILD 175

Query: 178 LSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLF 236
           LS N   G       N+     T+L+ LD   N + GE+P     L  +   ++  N   
Sbjct: 176 LSKNNLTGNFPASLGNL-----TSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFS 230

Query: 237 GMIPEELLESVIPIQELDLSGNGFT 261
           G  P  L  ++  ++ L L+ N F+
Sbjct: 231 GGFPPALY-NISSLESLSLADNSFS 254

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 136/286 (47%), Gaps = 61/286 (21%)

Query: 27  SELGSLIEFKKGI-----QDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPES--GSVN 79
           ++L +L+E KK +     +DDPL +    WN  ++     C  SWTGV+CD       + 
Sbjct: 25  NDLQTLLEVKKSLVTNPQEDDPLRQ----WNSDNI---NYC--SWTGVTCDNTGLFRVIA 75

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L+L+G   TG I P  G   +L +LDLS+N  +GPIP  +++L  L  L L  N   G  
Sbjct: 76  LNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEI 135

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG-------------- 185
           P  L +L  ++ L +  N+L GDI   +  L N++ + L+  R  G              
Sbjct: 136 PSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQS 195

Query: 186 --------------GLGVGAD-NVSSIANT--------------NLEVLDLGDNGITGEL 216
                          LG  +D  V + A                NLE+L+L +N +TGE+
Sbjct: 196 LILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEI 255

Query: 217 PS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           PS  G +  L+ L L +NQL G+IP+ L + +  +Q LDLS N  T
Sbjct: 256 PSQLGEMSQLQYLSLMANQLQGLIPKSLAD-LGNLQTLDLSANNLT 300

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 117/236 (49%), Gaps = 19/236 (8%)

Query: 12  FFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSC 71
            F L L F  +  +E EL  L+ FK  IQD PL  + S+W+ +S  D       W+GV C
Sbjct: 17  LFFLFLNFSCLHANELEL--LLSFKSSIQD-PLKHL-SSWSYSSTNDV----CLWSGVVC 68

Query: 72  DPESGSVNLSLSGNNFTGRIVPALG-SISSLQYLDLSNNKFIGPIPGRI--TDLWGLNYL 128
           +  S  V+L LSG N +G+I+ A    +  LQ ++LSNN   GPIP  I  T    L YL
Sbjct: 69  NNISRVVSLDLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYL 128

Query: 129 NLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG 188
           NLS N F G  P     L  L  LDL  N   G+I   +    N+  +DL  N   G + 
Sbjct: 129 NLSNNNFSGSIPRGF--LPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVP 186

Query: 189 VGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEEL 243
               N+S      LE L L  N +TG +P   G + NLK + LG N L G IP ++
Sbjct: 187 GYLGNLS-----RLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQI 237

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 16/235 (6%)

Query: 13  FSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCD 72
           F L   F +      +  +L+ FK+ IQ+     + + WN      + S P SW GV+C+
Sbjct: 10  FILTHFFAIATSLNDQGLALLSFKQSIQNQS-DSVFTNWN-----SSDSNPCSWQGVTCN 63

Query: 73  PESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSM 132
            +   V++ L     +G + P++GS+ SL++++L +N F G +P  +  L GL  L LS 
Sbjct: 64  YDMRVVSIRLPNKRLSGSLDPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSG 123

Query: 133 NGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGL--GVG 190
           N F G  P  + +L+ L  LDL +N   G I   +   K ++ + LS N F G L  G+G
Sbjct: 124 NSFSGFVPEEIGSLKSLMTLDLSENSFNGSISLSLIPCKKLKTLVLSKNSFSGDLPTGLG 183

Query: 191 ADNVSSIANTNLEVLDLGDNGITGELPS-FGMLPNLK-VLRLGSNQLFGMIPEEL 243
           ++ V      +L  L+L  N +TG +P   G L NLK  L L  N   GMIP  L
Sbjct: 184 SNLV------HLRTLNLSFNRLTGTIPEDVGSLENLKGTLDLSHNFFSGMIPTSL 232

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
297807033	1051	hypothetical protein ARALYDRAFT_487827 [	0.984	0.244	0.512	5e-77
217426815	1052	AT5G10020-like protein [Arabidopsis aren	0.984	0.244	0.512	5e-77
224096276	1056	predicted protein [Populus trichocarpa]	0.900	0.222	0.577	2e-76
224083779	1053	predicted protein [Populus trichocarpa]	0.896	0.222	0.567	2e-75
17978960	1048	AT5g10020/T31P16_9 [Arabidopsis thaliana	0.908	0.226	0.513	3e-74
15238044	1048	putative inactive receptor kinase [Arabi	0.908	0.226	0.513	4e-74
449451491	1039	PREDICTED: probable inactive receptor ki	0.984	0.247	0.5	2e-70
225438587	1065	PREDICTED: probable inactive receptor ki	0.892	0.218	0.519	2e-70
255582512	1068	receptor protein kinase, putative [Ricin	0.965	0.235	0.538	2e-69
72255606	1037	117M18_5 [Brassica rapa]	0.885	0.222	0.515	2e-66

>gi|297807033|ref|XP_002871400.1| hypothetical protein ARALYDRAFT_487827 [Arabidopsis lyrata subsp. lyrata] gi|297317237|gb|EFH47659.1| hypothetical protein ARALYDRAFT_487827 [Arabidopsis lyrata subsp. lyrata]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 159/310 (51%), Positives = 204/310 (65%), Gaps = 53/310 (17%)

Query: 3   LHHFSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSC 62
           + HF + F F SL LL      +E+EL SL+EF+KGI+D+   +  S  + +SL D  +C
Sbjct: 1   MSHF-LTFCFISL-LLIGANAVTETELRSLLEFRKGIRDETSHQRISWSDTSSLTDPSTC 58

Query: 63  PVSWTGVSCDPESGSV--------------------------NLSLSGNNFTGRIVPALG 96
           P  W G+SCDPE+GS+                          NLSLSGN+F+GR+VP+LG
Sbjct: 59  PNDWPGISCDPETGSIIAINLDRRGLSGELKFSTLSGLTRLRNLSLSGNSFSGRVVPSLG 118

Query: 97  SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156
            ISSLQ+LDLS+N F GPIPGRI++LW LN+LNLS N F+GGFP   RNLQQL+ LDL K
Sbjct: 119 GISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGGFPSGFRNLQQLRSLDLHK 178

Query: 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANT---------------- 200
           N++WGD+G I +ELKNVEFVDLS NRFHGGL +  +N+SSI+NT                
Sbjct: 179 NEIWGDVGEIFTELKNVEFVDLSCNRFHGGLSLPMENISSISNTLRHLNLSHNALNGKFF 238

Query: 201 ---------NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQ 251
                    NLE++DL +N I GELP FG  P+L++L+L  NQLFG++PEELL+S IP+ 
Sbjct: 239 SAESIGSFKNLEIVDLENNQINGELPHFGSQPSLRILKLARNQLFGLVPEELLQSSIPLL 298

Query: 252 ELDLSGNGFT 261
           ELDLS NGFT
Sbjct: 299 ELDLSRNGFT 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217426815|gb|ACK44523.1| AT5G10020-like protein [Arabidopsis arenosa]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 159/310 (51%), Positives = 204/310 (65%), Gaps = 53/310 (17%)

Query: 3   LHHFSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSC 62
           + HF + F F SL L+    + +E+EL SL+EF+KGI+D+   +  S  + +SL D  +C
Sbjct: 1   MSHF-LTFCFISLLLIGANAV-TETELRSLLEFRKGIRDETSHQRISWSDTSSLTDPSTC 58

Query: 63  PVSWTGVSCDPESGSV--------------------------NLSLSGNNFTGRIVPALG 96
           P  W G+SCDPE+GS+                          NLSLSGN+F+GR+VP+LG
Sbjct: 59  PNDWPGISCDPETGSIIAINLDRRGLSGELKFSTLSGLTRLRNLSLSGNSFSGRVVPSLG 118

Query: 97  SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156
            ISSLQ+LDLS+N F GPIPGRI+DLW LN+LNLS N F GGFP   RNLQQL+ LDL K
Sbjct: 119 GISSLQHLDLSDNGFYGPIPGRISDLWSLNHLNLSSNKFVGGFPSGFRNLQQLRSLDLHK 178

Query: 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANT---------------- 200
           N++WGD+G I +ELKNVEFVDLS NRFHGGL +  +N+SSI+NT                
Sbjct: 179 NEIWGDVGEIFTELKNVEFVDLSCNRFHGGLSLPMENISSISNTLRHLNLSHNALNGKFF 238

Query: 201 ---------NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQ 251
                    NLE++DL +N I GELP FG  P+L++L+L  NQLFG++PEELL+S IP+ 
Sbjct: 239 SAESIVSFKNLEIVDLENNQINGELPHFGSQPSLRILKLARNQLFGLVPEELLQSSIPLL 298

Query: 252 ELDLSGNGFT 261
           ELDLS NGFT
Sbjct: 299 ELDLSRNGFT 308

Source: Arabidopsis arenosa

Species: Arabidopsis arenosa

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096276|ref|XP_002310597.1| predicted protein [Populus trichocarpa] gi|222853500|gb|EEE91047.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 168/291 (57%), Positives = 189/291 (64%), Gaps = 56/291 (19%)

Query: 27  SELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSV-------- 78
           S+L SL+EFKKGI  DPL +I S W+ +S+PD  SCP SW G+SCDP S SV        
Sbjct: 20  SDLRSLLEFKKGILYDPLDKIFSKWDPSSIPDPNSCPNSWPGISCDPNSDSVIAITLDHL 79

Query: 79  ------------------NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRIT 120
                             N+SLSGNNFTGRIVPALGS+SSLQYLDLSNN F GPIPGRI 
Sbjct: 80  SLSGNLKFSTLLDLKSLQNISLSGNNFTGRIVPALGSMSSLQYLDLSNNNFSGPIPGRIV 139

Query: 121 DLWGLNYLNLSMNGFKGGF----PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV 176
           +LW L YLNLSMNGF+G F    P   RNLQQL+VLDL  N  WGDI G++SEL N+E V
Sbjct: 140 ELWNLKYLNLSMNGFEGRFPVGSPVGFRNLQQLRVLDLSCNSFWGDISGVLSELINLERV 199

Query: 177 DLSFNRFHGGLG-VGADNVSSIANT-------------------------NLEVLDLGDN 210
           DLS N F GG   +  +NVS +ANT                         NLEVLDLG N
Sbjct: 200 DLSDNGFFGGFSEISVENVSGLANTVHFVNLSKNRLNSGFFKAEVIALFRNLEVLDLGYN 259

Query: 211 GITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            I GELPSFG L NLKVLRLG+NQLFG IPEEL+   IPI+ELDLSGNGFT
Sbjct: 260 VINGELPSFGSLTNLKVLRLGNNQLFGGIPEELINGSIPIEELDLSGNGFT 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083779|ref|XP_002307121.1| predicted protein [Populus trichocarpa] gi|222856570|gb|EEE94117.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 165/291 (56%), Positives = 190/291 (65%), Gaps = 57/291 (19%)

Query: 27  SELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSV-------- 78
           S+L SL+EFKKGIQ DPL  I S W+ ++LPD  SCP SW G+SCDP S SV        
Sbjct: 20  SDLRSLLEFKKGIQSDPLHMI-SKWDPSALPDPNSCPHSWPGISCDPNSDSVISITLDRL 78

Query: 79  ------------------NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRIT 120
                             ++SLSGN FTGR+VPALGS+SSLQYLDLSNN F GPIPGRI 
Sbjct: 79  GLAGDLKFSTLLSLNSLQSISLSGNQFTGRLVPALGSMSSLQYLDLSNNNFSGPIPGRIA 138

Query: 121 DLWGLNYLNLSMNGFKGGFPGNL----RNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV 176
           +LW L YLNLS NGF+GGFP  L    RNLQQL+VLDL  N+ WGDI  ++SEL ++E V
Sbjct: 139 ELWNLKYLNLSTNGFEGGFPVGLPVGFRNLQQLRVLDLSSNRFWGDISAVLSELIHLEKV 198

Query: 177 DLSFNRFHGGLG-VGADNVSSIANT-------------------------NLEVLDLGDN 210
           DLS N F GG   +  +NVS +ANT                         NLEVLDLG+N
Sbjct: 199 DLSDNEFSGGFSDISGENVSGLANTLHLLNLRKNKFNGGFLKADVIGLFRNLEVLDLGNN 258

Query: 211 GITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            I GELPSFG L NLKVLRLG+NQL+G IPEELL   IPI+ELDLSGNGFT
Sbjct: 259 EINGELPSFGSLTNLKVLRLGNNQLYGGIPEELLNGSIPIEELDLSGNGFT 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17978960|gb|AAL47484.1| AT5g10020/T31P16_9 [Arabidopsis thaliana]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/288 (51%), Positives = 194/288 (67%), Gaps = 51/288 (17%)

Query: 25  SESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSV------ 78
           +E+EL SL+EF+KGI+D+   +  S  + +SL D  +CP  W G+SCDPE+GS+      
Sbjct: 23  TETELRSLLEFRKGIRDETSHQRISWSDTSSLTDPSTCPNDWPGISCDPETGSIIAINLD 82

Query: 79  --------------------NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGR 118
                               NLSLSGN+F+GR+VP+LG ISSLQ+LDLS+N F GPIPGR
Sbjct: 83  RRGLSGELKFSTLSGLTRLRNLSLSGNSFSGRVVPSLGGISSLQHLDLSDNGFYGPIPGR 142

Query: 119 ITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDL 178
           I++LW LN+LNLS N F+GGFP   RNLQQL+ LDL KN++WGD+G I +ELKNVEFVDL
Sbjct: 143 ISELWSLNHLNLSSNKFEGGFPSGFRNLQQLRSLDLHKNEIWGDVGEIFTELKNVEFVDL 202

Query: 179 SFNRFHGGLGVGADNVSSIANT-------------------------NLEVLDLGDNGIT 213
           S NRF+GGL +  +N+SSI+NT                         NLE++DL +N I 
Sbjct: 203 SCNRFNGGLSLPMENISSISNTLRHLNLSHNALNGKFFSEESIGSFKNLEIVDLENNQIN 262

Query: 214 GELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           GELP FG  P+L++L+L  N+LFG++P+ELL+S IP+ ELDLS NGFT
Sbjct: 263 GELPHFGSQPSLRILKLARNELFGLVPQELLQSSIPLLELDLSRNGFT 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238044|ref|NP_196564.1| putative inactive receptor kinase [Arabidopsis thaliana] gi|193806638|sp|Q0WR59.2|Y5020_ARATH RecName: Full=Probable inactive receptor kinase At5g10020; Flags: Precursor gi|224589667|gb|ACN59365.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332004099|gb|AED91482.1| putative inactive receptor kinase [Arabidopsis thaliana]

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 148/288 (51%), Positives = 194/288 (67%), Gaps = 51/288 (17%)

Query: 25  SESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSV------ 78
           +E+EL SL+EF+KGI+D+   +  S  + +SL D  +CP  W G+SCDPE+GS+      
Sbjct: 23  TETELRSLLEFRKGIRDETSHQRISWSDTSSLTDPSTCPNDWPGISCDPETGSIIAINLD 82

Query: 79  --------------------NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGR 118
                               NLSLSGN+F+GR+VP+LG ISSLQ+LDLS+N F GPIPGR
Sbjct: 83  RRGLSGELKFSTLSGLTRLRNLSLSGNSFSGRVVPSLGGISSLQHLDLSDNGFYGPIPGR 142

Query: 119 ITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDL 178
           I++LW LN+LNLS N F+GGFP   RNLQQL+ LDL KN++WGD+G I +ELKNVEFVDL
Sbjct: 143 ISELWSLNHLNLSSNKFEGGFPSGFRNLQQLRSLDLHKNEIWGDVGEIFTELKNVEFVDL 202

Query: 179 SFNRFHGGLGVGADNVSSIANT-------------------------NLEVLDLGDNGIT 213
           S NRF+GGL +  +N+SSI+NT                         NLE++DL +N I 
Sbjct: 203 SCNRFNGGLSLPMENISSISNTLRHLNLSHNALNGKFFSEESIGSFKNLEIVDLENNQIN 262

Query: 214 GELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           GELP FG  P+L++L+L  N+LFG++P+ELL+S IP+ ELDLS NGFT
Sbjct: 263 GELPHFGSQPSLRILKLARNELFGLVPQELLQSSIPLLELDLSRNGFT 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451491|ref|XP_004143495.1| PREDICTED: probable inactive receptor kinase At5g10020-like [Cucumis sativus] gi|449516719|ref|XP_004165394.1| PREDICTED: probable inactive receptor kinase At5g10020-like [Cucumis sativus]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 155/310 (50%), Positives = 197/310 (63%), Gaps = 53/310 (17%)

Query: 3   LHHFSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSC 62
           L+H +++  F  L L+ +V   S+SEL  L+EFKKGI  DP   ++  W++ S+ +   C
Sbjct: 7   LYHAALSLNFIYL-LIVLVSSASDSELNCLLEFKKGILKDPHNSVNGKWDLASVSNFDGC 65

Query: 63  PVSWTGVSCDPESGSV--------------------------NLSLSGNNFTGRIVPALG 96
           P SWTGVSCD E+G+V                          NLSL GN+FTGR+VPALG
Sbjct: 66  PSSWTGVSCD-ENGNVSAIVLDRLGLGGELKFQTLIGLKSLKNLSLFGNDFTGRLVPALG 124

Query: 97  SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156
           ++S+LQ+LDLS+N+F GPIP RI DL+ LNYLN S N F GGFP    NL QLKVLDL  
Sbjct: 125 TLSNLQHLDLSSNRFYGPIPERINDLYNLNYLNFSANEFNGGFPVGRLNLNQLKVLDLHS 184

Query: 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANT---------------- 200
           N+L+G+IG ++S+L+NVE+VDLS N F+GGL +G DNVSS+ANT                
Sbjct: 185 NRLYGNIGLLVSQLRNVEYVDLSHNEFYGGLSIGPDNVSSLANTLKSFNLSYNRLNGGFF 244

Query: 201 ---------NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQ 251
                    NL VLD+G N I GELPSFG LPNL+VLRLG N L G +P ELL   + ++
Sbjct: 245 DVDSLMLFRNLVVLDMGHNQIIGELPSFGSLPNLRVLRLGYNLLSGSVPGELLNRSLQLE 304

Query: 252 ELDLSGNGFT 261
           ELDLSGN FT
Sbjct: 305 ELDLSGNAFT 314

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438587|ref|XP_002276354.1| PREDICTED: probable inactive receptor kinase At5g10020 [Vitis vinifera] gi|296082489|emb|CBI21494.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/285 (51%), Positives = 185/285 (64%), Gaps = 52/285 (18%)

Query: 28  ELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSV--------- 78
           +L SL+EFKKGI+ DPLG++ ++WN  S  D + CP  W GV CD    SV         
Sbjct: 33  DLRSLLEFKKGIEVDPLGKVLNSWN-RSGADPEKCPRGWHGVVCDESELSVVAIVLDRLG 91

Query: 79  -----------------NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITD 121
                            NLSL+GN+FTGR+VP +GS+SSL+ LDLS N+F GPIP RI++
Sbjct: 92  LEGELKFNTLLGLKMLRNLSLAGNSFTGRLVPVMGSMSSLEVLDLSGNRFYGPIPARISE 151

Query: 122 LWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN 181
           LW LNY+NLS N  KGGFPG   NLQQLK LDL  N++ GD G ++SE +NVE+VDLS N
Sbjct: 152 LWNLNYVNLSNNNLKGGFPGGFHNLQQLKTLDLHSNEISGDFGTLLSEFRNVEYVDLSHN 211

Query: 182 RFHGGLGVGADNVSSIANT-------------------------NLEVLDLGDNGITGEL 216
           +F+GG+  G +NVSS+ANT                         NL+VLDLG+N I GEL
Sbjct: 212 KFYGGISAGKENVSSLANTVQYVNLSYNDLSGGFFDDESIVLFRNLQVLDLGNNQIRGEL 271

Query: 217 PSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           PSFG LPNL+VL L +NQL+G IP+ LLES +P+ ELDLSGNGFT
Sbjct: 272 PSFGSLPNLQVLNLRNNQLYGSIPKGLLESSMPLTELDLSGNGFT 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582512|ref|XP_002532041.1| receptor protein kinase, putative [Ricinus communis] gi|223528284|gb|EEF30331.1| receptor protein kinase, putative [Ricinus communis]

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 168/312 (53%), Positives = 200/312 (64%), Gaps = 60/312 (19%)

Query: 10  FFFFSLHLLFVV----VLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVS 65
           F F    LLF         S+SEL SL+EFKKGI  DPL +I STWN +SLPD  +CP +
Sbjct: 10  FLFLYTSLLFFTFSPSTSASQSELRSLLEFKKGISSDPLNKILSTWNFSSLPDLNTCPAA 69

Query: 66  WTGVSCDPESGSV--------------------------NLSLSGNNFTGRIVPALGSIS 99
           W G++CDP +  +                          NLSLSGN FTGRIVPALGS+S
Sbjct: 70  WPGIACDPTTDLITAISLDRLSLSGDLKFSTLLNLKSLQNLSLSGNRFTGRIVPALGSMS 129

Query: 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNL----RNLQQLKVLDLR 155
           SLQYLDLS+N F GPIPGRI +LW L Y+NLS NGF+GGFP  L    RNLQQLKVLDLR
Sbjct: 130 SLQYLDLSDNNFSGPIPGRIAELWNLKYVNLSRNGFEGGFPVGLPVPFRNLQQLKVLDLR 189

Query: 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGL-GVGADNVSSIANT-------------- 200
            NK  G++G ++SEL N+E +DLS N F+G L G+ A+NVS +ANT              
Sbjct: 190 SNKFGGNVGEVLSELINLEHLDLSDNVFYGQLDGLSAENVSGLANTVRFVNFSGNKLNGG 249

Query: 201 -----------NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIP 249
                      NLEVLDL DNGI GELPS G L +L+VLRL +N+LFG IPEELL+  +P
Sbjct: 250 FLKEEVIGLFRNLEVLDLSDNGINGELPSLGSLLSLRVLRLKNNELFGGIPEELLKGSMP 309

Query: 250 IQELDLSGNGFT 261
           I+ELDLSGNGFT
Sbjct: 310 IEELDLSGNGFT 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|72255606|gb|AAZ66924.1| 117M18_5 [Brassica rapa]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 147/285 (51%), Positives = 176/285 (61%), Gaps = 54/285 (18%)

Query: 28  ELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSV--------- 78
           EL SL+EF+KGI+D+            SL D  +C   W G+SCDPE+GSV         
Sbjct: 32  ELQSLLEFRKGIRDESSNNRIQWAAPDSLTDPTTCLDDWPGISCDPETGSVTSINLDRLG 91

Query: 79  -----------------NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITD 121
                            NL+LSGN F+GR+VP+LG I+SLQ+LDLS+N F GPIP RI+ 
Sbjct: 92  LSGELKFHTLASLPSLRNLTLSGNRFSGRVVPSLGKITSLQHLDLSDNGFYGPIPDRISA 151

Query: 122 LWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN 181
           LWGLNYLNLS N F  GFPG   NLQQL+ LDL  N ++GD+  I +ELKNVEFVDLS N
Sbjct: 152 LWGLNYLNLSANKFSSGFPGGFGNLQQLRSLDLHGNDVYGDVTEIFAELKNVEFVDLSSN 211

Query: 182 RFHGGLGVGADNVSSIANT-------------------------NLEVLDLGDNGITGEL 216
           RF+GGL +    VSSI+NT                         NLEVLDL +N I GEL
Sbjct: 212 RFNGGLTL---TVSSISNTLRHLNLSHNELNGGFFSGDSIGLFKNLEVLDLENNEINGEL 268

Query: 217 PSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           P FG  PNL++LRL  NQLFG +P ELL+S IP+QELDLS NGFT
Sbjct: 269 PRFGSQPNLRILRLARNQLFGAVPGELLQSSIPLQELDLSRNGFT 313

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2184058	1048	AT5G10020 [Arabidopsis thalian	0.586	0.145	0.585	5.3e-44
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.850	0.189	0.324	7.3e-25
TAIR|locus:2005629	1140	AT1G75640 [Arabidopsis thalian	0.846	0.193	0.343	1.2e-22
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.647	0.176	0.382	5.2e-22
TAIR|locus:2115120	768	AT4G37250 [Arabidopsis thalian	0.823	0.279	0.341	9.6e-22
TAIR|locus:2033379	685	AT1G66830 [Arabidopsis thalian	0.842	0.321	0.326	2.1e-21
TAIR|locus:2102499	964	AT3G56370 [Arabidopsis thalian	0.854	0.231	0.348	7.9e-21
TAIR|locus:2043540	960	AT2G25790 [Arabidopsis thalian	0.846	0.230	0.343	2.7e-20
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.854	0.221	0.315	2.9e-20
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.862	0.218	0.280	3.9e-20

TAIR|locus:2184058 AT5G10020 [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 5.3e-44, P = 5.3e-44
 Identities = 92/157 (58%), Positives = 120/157 (76%)

Query:    87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNL 146
             F+GR+VP+LG ISSLQ+LDLS+N F GPIPGRI++LW LN+LNLS N F+GGFP   RNL
Sbjct:   111 FSGRVVPSLGGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGGFPSGFRNL 170

Query:   147 QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLD 206
             QQL+ LDL KN++WGD+G I +ELKNVEFVDLS NRF+GGL +  +N+SSI+NT L  L+
Sbjct:   171 QQLRSLDLHKNEIWGDVGEIFTELKNVEFVDLSCNRFNGGLSLPMENISSISNT-LRHLN 229

Query:   207 LGDNGITGEL---PSFGMLPNLKVLRLGSNQLFGMIP 240
             L  N + G+     S G   NL+++ L +NQ+ G +P
Sbjct:   230 LSHNALNGKFFSEESIGSFKNLEIVDLENNQINGELP 266

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 7.3e-25, P = 7.3e-25
 Identities = 76/234 (32%), Positives = 118/234 (50%)

Query:    26 ESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXXX 85
             E E+ +L  FK GI +DPLG + S W I  +   + C  +WTG++CD             
Sbjct:    28 EPEIEALKSFKNGISNDPLG-VLSDWTI--IGSLRHC--NWTGITCDSTGHVVSVSLLEK 82

Query:    86 XFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRN 145
                G + PA+ +++ LQ LDL++N F G IP  I  L  LN L L +N F G  P  +  
Sbjct:    83 QLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWE 142

Query:   146 LQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVL 205
             L+ +  LDLR N L GD+   + +  ++  +   +N   G +    + +  + +  L++ 
Sbjct:   143 LKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKI---PECLGDLVH--LQMF 197

Query:   206 DLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
                 N +TG +P S G L NL  L L  NQL G IP +   +++ +Q L L+ N
Sbjct:   198 VAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDF-GNLLNLQSLVLTEN 250

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2005629 AT1G75640 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 81/236 (34%), Positives = 117/236 (49%)

Query:    27 SELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXXXX 86
             SE  +L  FK  + D PLG + S WN +S P   S P  W GVSC               
Sbjct:    27 SETQALTSFKLSLHD-PLGALES-WNQSS-P---SAPCDWHGVSCF-SGRVRELRLPRLH 79

Query:    87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNL 146
              TG + P LG ++ L+ L L  N   G +P  ++    L  L L  N F G FP  + NL
Sbjct:    80 LTGHLSPRLGELTQLRKLSLHTNDINGAVPSSLSRCVFLRALYLHYNSFSGDFPPEILNL 139

Query:   147 QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLD 206
             + L+VL+   N L G++  +    K++ +VDLS N   G +     N S  A+++L++++
Sbjct:   140 RNLQVLNAAHNSLTGNLSDVTVS-KSLRYVDLSSNAISGKIPA---NFS--ADSSLQLIN 193

Query:   207 LGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
             L  N  +GE+P+  G L +L+ L L SNQL G IP  L      I    ++GN  T
Sbjct:   194 LSFNHFSGEIPATLGQLQDLEYLWLDSNQLQGTIPSALANCSSLIH-FSVTGNHLT 248

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 5.2e-22, P = 5.2e-22
 Identities = 67/175 (38%), Positives = 95/175 (54%)

Query:    87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNL 146
             F+G+I  ++G++S+L  LDLSNN F G IP  I +L  L +L L  N F G  P +  NL
Sbjct:   229 FSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNL 288

Query:   147 QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLD 206
              QL  L +  NKL G+   ++  L  +  + LS N+F G L     N++S++N  L   D
Sbjct:   289 NQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSLSNNKFTGTL---PPNITSLSN--LMDFD 343

Query:   207 LGDNGITGELPSFGM-LPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
               DN  TG  PSF   +P+L  +RL  NQL G +    + S   + ELD+  N F
Sbjct:   344 ASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDIGNNNF 398

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2115120 AT4G37250 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 9.6e-22, P = 9.6e-22
 Identities = 79/231 (34%), Positives = 109/231 (47%)

Query:    32 LIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXXXXFTGRI 91
             L++FK  +  DPL  +  TWN          P SW G+SC+ +              G I
Sbjct:    29 LMKFKSSVLVDPLSLLQ-TWNYKH-----ESPCSWRGISCNNDSKVLTLSLPNSQLLGSI 82

Query:    92 VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
                LGS+ +LQ LDLSNN F GP+P    +   L +L+LS N   G  P  + +L  L  
Sbjct:    83 PSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLLT 142

Query:   152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
             L+L  N L G +   ++ L+N+  V L  N F G +  G   V       +E LDL  N 
Sbjct:   143 LNLSDNALAGKLPTNLASLRNLTVVSLENNYFSGEIP-GGWRV-------VEFLDLSSNL 194

Query:   212 ITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
             I G LP  FG   +L+ L +  NQ+ G IP E+  +      +DLS N  T
Sbjct:   195 INGSLPPDFGGY-SLQYLNVSFNQISGEIPPEIGVNFPRNVTVDLSFNNLT 244

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2033379 AT1G66830 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-21, P = 2.1e-21
 Identities = 76/233 (32%), Positives = 118/233 (50%)

Query:    31 SLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXXXXFTGR 90
             +L+ FK+ IQ+     + + WN +   D+  C  SW GV+C+ +             +G 
Sbjct:    28 ALLSFKQSIQNQS-DSVFTNWNSS---DSNPC--SWQGVTCNYDMRVVSIRLPNKRLSGS 81

Query:    91 IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLK 150
             + P++GS+ SL++++L +N F G +P  +  L GL  L LS N F G  P  + +L+ L 
Sbjct:    82 LDPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNSFSGFVPEEIGSLKSLM 141

Query:   151 VLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDN 210
              LDL +N   G I   +   K ++ + LS N F G L  G    S++ +  L  L+L  N
Sbjct:   142 TLDLSENSFNGSISLSLIPCKKLKTLVLSKNSFSGDLPTGLG--SNLVH--LRTLNLSFN 197

Query:   211 GITGELPS-FGMLPNLK-VLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
              +TG +P   G L NLK  L L  N   GMIP  L  ++  +  +DLS N  +
Sbjct:   198 RLTGTIPEDVGSLENLKGTLDLSHNFFSGMIPTSL-GNLPELLYVDLSYNNLS 249

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2102499 AT3G56370 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 7.9e-21, P = 7.9e-21
 Identities = 84/241 (34%), Positives = 115/241 (47%)

Query:    25 SESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXX 84
             ++  LG LI FK  ++D P  ++ S WN     +    P SW GV C P           
Sbjct:    26 NDDVLG-LIVFKADLRD-PEQKLAS-WN-----EDDYTPCSWNGVKCHPRTNRVTELNLD 77

Query:    85 X-XFTGRIVPALGSISSLQYLDLSNNKFIGPI-PGRITDLWGLNYLNLSMNGFKGGFPGN 142
                 +GRI   L  +  L  L LSNN   G I P  +  L  L  ++LS NG  G  P  
Sbjct:    78 GFSLSGRIGRGLLQLQFLHKLSLSNNNLTGIINPNMLLSLVNLKVVDLSSNGLSGSLPDE 137

Query:   143 L-RNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTN 201
               R    L+VL L KNKL G I   +S   ++  ++LS N F G + +G   + S+ NT 
Sbjct:   138 FFRQCGSLRVLSLAKNKLTGKIPVSISSCSSLAALNLSSNGFSGSMPLG---IWSL-NT- 192

Query:   202 LEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
             L  LDL  N + GE P     L NL+ L L  N+L G IP E+  S + ++ +DLS N  
Sbjct:   193 LRSLDLSRNELEGEFPEKIDRLNNLRALDLSRNRLSGPIPSEI-GSCMLLKTIDLSENSL 251

Query:   261 T 261
             +
Sbjct:   252 S 252

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 82/239 (34%), Positives = 111/239 (46%)

Query:    27 SELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXXXX 86
             +EL  L+ FK  IQD PL  + S+W+ +S  D   C   W+GV C+              
Sbjct:    30 NELELLLSFKSSIQD-PLKHL-SSWSYSSTNDV--C--LWSGVVCNNISRVVSLDLSGKN 83

Query:    87 FTGRIVPALG-SISSLQYLDLSNNKFIGPIPGRI--TDLWGLNYLNLSMNGFKGGFPGNL 143
              +G+I+ A    +  LQ ++LSNN   GPIP  I  T    L YLNLS N F G  P   
Sbjct:    84 MSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGF 143

Query:   144 RNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLE 203
               L  L  LDL  N   G+I   +    N+  +DL  N   G +     N+S      LE
Sbjct:   144 --LPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLS-----RLE 196

Query:   204 VLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
              L L  N +TG +P   G + NLK + LG N L G IP ++   +  +  LDL  N  +
Sbjct:   197 FLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQI-GGLSSLNHLDLVYNNLS 254

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 75/238 (31%), Positives = 113/238 (47%)

Query:    26 ESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXXX 85
             ES+  +L+E K  + +     + S WN  S P    C  SW  V C  +           
Sbjct:    23 ESDRQALLEIKSQVSESKRDAL-SAWN-NSFP---LC--SWKWVRCGRKHKRVTRLDLGG 75

Query:    86 XFTGRIV-PALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR 144
                G ++ P++G++S L YLDLSNN F G IP  + +L+ L YL +  N  +G  P +L 
Sbjct:    76 LQLGGVISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLS 135

Query:   145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV 204
             N  +L  LDL  N L   +   +  L+ + ++ L  N   G   V   N+     T+L V
Sbjct:   136 NCSRLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNL-----TSLIV 190

Query:   205 LDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
             L+LG N + GE+P    ML  +  L L  N   G+ P     ++  ++ L L GNGF+
Sbjct:   191 LNLGYNHLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFY-NLSSLENLYLLGNGFS 247

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 3.9e-20, P = 3.9e-20
 Identities = 67/239 (28%), Positives = 116/239 (48%)

Query:    25 SESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXX 84
             +E+++ +L+EFK  + ++    + ++WN +S P    C  +W GV+C             
Sbjct:    28 NETDMQALLEFKSQVSENNKREVLASWNHSS-P---FC--NWIGVTCGRRRERVISLNLG 81

Query:    85 XX-FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNL 143
                 TG I P++G++S L+ L+L++N F   IP ++  L+ L YLN+S N  +G  P +L
Sbjct:    82 GFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSL 141

Query:   144 RNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLE 203
              N  +L  +DL  N L   +   +  L  +  +DLS N   G       N+     T+L+
Sbjct:   142 SNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNL-----TSLQ 196

Query:   204 VLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
              LD   N + GE+P     L  +   ++  N   G  P  L  ++  ++ L L+ N F+
Sbjct:   197 KLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALY-NISSLESLSLADNSFS 254

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.6__961__AT5G10020.1 annotation not avaliable (1051 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	9e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  117 bits (294), Expect = 9e-30
 Identities = 86/258 (33%), Positives = 125/258 (48%), Gaps = 24/258 (9%)

Query: 6   FSVAFFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVS 65
           F + F F +  +L         EL  L+ FK  I D PL  + S WN         C   
Sbjct: 14  FMLFFLFLNFSML------HAEELELLLSFKSSIND-PLKYL-SNWN----SSADVC--L 59

Query: 66  WTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDL-WG 124
           W G++C+  S  V++ LSG N +G+I  A+  +  +Q ++LSNN+  GPIP  I      
Sbjct: 60  WQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS 119

Query: 125 LNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
           L YLNLS N F G  P    ++  L+ LDL  N L G+I   +    +++ +DL  N   
Sbjct: 120 LRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 185 GGLGVGADNVSSIANTNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEEL 243
           G +     N++S     LE L L  N + G++P   G + +LK + LG N L G IP E+
Sbjct: 178 GKIPNSLTNLTS-----LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232

Query: 244 LESVIPIQELDLSGNGFT 261
              +  +  LDL  N  T
Sbjct: 233 GG-LTSLNHLDLVYNNLT 249

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 97.2 bits (242), Expect = 7e-23
 Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 6/166 (3%)

Query: 82  LSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG 141
           L  NN +G I   +G ++SL +LDL  N   GPIP  + +L  L YL L  N   G  P 
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTN 201
           ++ +LQ+L  LDL  N L G+I  ++ +L+N+E + L  N F G + V    ++S+    
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA---LTSLP--R 333

Query: 202 LEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLES 246
           L+VL L  N  +GE+P   G   NL VL L +N L G IPE L  S
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.2 bits (229), Expect = 3e-21
 Identities = 66/168 (39%), Positives = 86/168 (51%), Gaps = 10/168 (5%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           +L L  NN TG I  +LG++ +LQYL L  NK  GPIP  I  L  L  L+LS N   G 
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGL--GVGADNVSS 196
            P  +  LQ L++L L  N   G I   ++ L  ++ + L  N+F G +   +G  N   
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN--- 356

Query: 197 IANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEEL 243
               NL VLDL  N +TGE+P       NL  L L SN L G IP+ L
Sbjct: 357 ----NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.2 bits (229), Expect = 4e-21
 Identities = 68/202 (33%), Positives = 96/202 (47%), Gaps = 21/202 (10%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L LS N  +G I   +GS SSL+ LDL  N  +G IP  +T+L  L +L L+ N   G  
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVS---- 195
           P  L  ++ LK + L  N L G+I   +  L ++  +DL +N   G +     N+     
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 196 --------------SIAN-TNLEVLDLGDNGITGELPSF-GMLPNLKVLRLGSNQLFGMI 239
                         SI +   L  LDL DN ++GE+P     L NL++L L SN   G I
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 240 PEELLESVIPIQELDLSGNGFT 261
           P   L S+  +Q L L  N F+
Sbjct: 325 PVA-LTSLPRLQVLQLWSNKFS 345

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 91.4 bits (227), Expect = 8e-21
 Identities = 63/183 (34%), Positives = 85/183 (46%), Gaps = 8/183 (4%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L LS NN TG I   L S  +L  L L +N   G IP  +     L  + L  N F G  
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
           P     L  +  LD+  N L G I     ++ +++ + L+ N+F GGL        S  +
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP------DSFGS 474

Query: 200 TNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
             LE LDL  N  +G +P   G L  L  L+L  N+L G IP+E L S   +  LDLS N
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHN 533

Query: 259 GFT 261
             +
Sbjct: 534 QLS 536

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.2 bits (203), Expect = 9e-18
 Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 6/182 (3%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L  N F+G I   LG  ++L  LDLS N   G IP  +     L  L L  N  +G  
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
           P +L   + L+ + L+ N   G++    ++L  V F+D+S N   G +     N      
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI-----NSRKWDM 451

Query: 200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG 259
            +L++L L  N   G LP       L+ L L  NQ  G +P +L  S+  + +L LS N 
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENK 510

Query: 260 FT 261
            +
Sbjct: 511 LS 512

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 79.1 bits (195), Expect = 9e-17
 Identities = 63/187 (33%), Positives = 87/187 (46%), Gaps = 42/187 (22%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWG---LNYLNLSMNGFK 136
           L +S NN  GRI      + SLQ L L+ NKF G +P    D +G   L  L+LS N F 
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP----DSFGSKRLENLDLSRNQFS 488

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
           G  P  L +L +L  L L +NKL G+I   +S  K                         
Sbjct: 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK------------------------ 524

Query: 197 IANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEEL--LESVIPIQEL 253
                L  LDL  N ++G++P SF  +P L  L L  NQL G IP+ L  +ES++   ++
Sbjct: 525 -----LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV---QV 576

Query: 254 DLSGNGF 260
           ++S N  
Sbjct: 577 NISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.9 bits (171), Expect = 1e-13
 Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 6/141 (4%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           LSL+ N F G +  + GS   L+ LDLS N+F G +P ++  L  L  L LS N   G  
Sbjct: 457 LSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
           P  L + ++L  LDL  N+L G I    SE+  +  +DLS N+  G +     NV S+  
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575

Query: 200 TNLEVLDLGDNGITGELPSFG 220
            N+       N + G LPS G
Sbjct: 576 VNIS-----HNHLHGSLPSTG 591

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           NL LS N F+G +   LGS+S L  L LS NK  G IP  ++    L  L+LS N   G 
Sbjct: 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGL----GVGADNV 194
            P +   +  L  LDL +N+L G+I   +  ++++  V++S N  HG L       A N 
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINA 598

Query: 195 SSIANTNL 202
           S++A    
Sbjct: 599 SAVAGNID 606

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 63/188 (33%), Positives = 87/188 (46%), Gaps = 17/188 (9%)

Query: 74  ESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDL-WGLNYLNLSM 132
                +L L+ N     I   L  +++L  LDL NN  I  IP  I  L   L  L+LS 
Sbjct: 92  LLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSD 149

Query: 133 NGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGAD 192
           N  +   P  LRNL  LK LDL  N L  D+  ++S L N+  +DLS N+          
Sbjct: 150 NKIES-LPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKIS-------- 199

Query: 193 NVSSIAN--TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPI 250
           ++       + LE LDL +N I   L S   L NL  L L +N+L      E + ++  +
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL--EDLPESIGNLSNL 257

Query: 251 QELDLSGN 258
           + LDLS N
Sbjct: 258 ETLDLSNN 265

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 31/65 (47%), Positives = 40/65 (61%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           +++LSGN+  G I P+LGSI+SL+ LDLS N F G IP  +  L  L  LNL+ N   G 
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 139 FPGNL 143
            P  L
Sbjct: 506 VPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 66  WTGVSCDPESGSVN-----LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRIT 120
           W+G  C  +S         L L      G I   +  +  LQ ++LS N   G IP  + 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 121 DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDI 163
            +  L  L+LS N F G  P +L  L  L++L+L  N L G +
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 7e-08
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 6/93 (6%)

Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
           L L    L G I   +S+L++++ ++LS N   G +     +++S     LEVLDL  N 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-----LEVLDLSYNS 477

Query: 212 ITGELP-SFGMLPNLKVLRLGSNQLFGMIPEEL 243
             G +P S G L +L++L L  N L G +P  L
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           + L LS N  +G I   L S   L  LDLS+N+  G IP   +++  L+ L+LS N   G
Sbjct: 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDI 163
             P NL N++ L  +++  N L G +
Sbjct: 562 EIPKNLGNVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 7/97 (7%)

Query: 123 WGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR 182
           W ++ L L   G +G  P ++  L+ L+ ++L  N + G+I   +  + ++E +DLS+N 
Sbjct: 418 WFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 183 FHGGLGVGADNVSSIAN-TNLEVLDLGDNGITGELPS 218
           F+G +        S+   T+L +L+L  N ++G +P+
Sbjct: 478 FNGSIP------ESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 66/226 (29%), Positives = 96/226 (42%), Gaps = 48/226 (21%)

Query: 72  DPESGSVNLSLSGNNFTGRIVP-------ALGSISSLQYLDLSNNKFIGPIPGRITDL-- 122
            P    + LSL   N TGRI          L     LQ LDLS+N       G +  L  
Sbjct: 50  QPSLKELCLSL---NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR 106

Query: 123 -WGLNYLNLSMNGF-KGGFP---GNLRNLQ-QLKVLDLRKNKLWG----DIGGIMSELKN 172
              L  L L+ NG    G       L++L   L+ L L +N+L G     +   +   ++
Sbjct: 107 SSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166

Query: 173 VEFVDLSFNRFHGGLGVGADNVSSIA-----NTNLEVLDLGDNGITGE--------LPSF 219
           ++ ++L+ N      G+G   + ++A     N NLEVLDL +NG+T E        L S 
Sbjct: 167 LKELNLANN------GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS- 219

Query: 220 GMLPNLKVLRLGSNQLFGMIPEELLESVIP----IQELDLSGNGFT 261
             L +L+VL LG N L       L  +++     +  L LS N  T
Sbjct: 220 --LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.9 bits (99), Expect = 7e-06
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 25 SESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCD 72
             +  +L+ FK  +  DP G   S+WN +S     S P SWTGV+CD
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGA-LSSWNPSS-----SDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           V+L LS N  +G+I  +   +  L  LDLS N+  G IP  + ++  L  +N+S N   G
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Query: 138 GFP 140
             P
Sbjct: 586 SLP 588

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 54/156 (34%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           NL LS N+ +  +   L ++S+L  LDLS NK I  +P  I  L  L  L+LS N     
Sbjct: 167 NLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIE- 223

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
              +L NL+ L  L+L  NKL      I   L N+E +DLS N+        +   S  +
Sbjct: 224 LLSSLSNLKNLSGLELSNNKLEDLPESI-GNLSNLETLDLSNNQ-------ISSISSLGS 275

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ 234
            TNL  LDL  N ++  LP   +L  L  L L    
Sbjct: 276 LTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLL 311

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 38.6 bits (91), Expect = 9e-05
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL 235
           TNLE LDL +N IT +LP    LPNL+ L L  N++
Sbjct: 1   TNLETLDLSNNQIT-DLPPLSNLPNLETLDLSGNKI 35

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 202 LEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
           L+ ++L  N I G +P S G + +L+VL L  N   G IPE L + +  ++ L+L+GN
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGN 500

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 201 NLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
           NL+ LDL +N +T  +P  +F  LPNLKVL L  N L   I  E    +  ++ LDLSGN
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNL-TSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159
           +L+ LDLSNN+      G    L  L  L+LS N      P     L  L+ LDL  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 48/140 (34%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 124 GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRF 183
            L+ L+ S      G   NL NL  L  LDL  N+L  +I  ++ EL N+  +DL  N  
Sbjct: 71  SLDLLSPSGISSLDG-SENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNI 128

Query: 184 HGGLGVGADNVSSIANT--NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPE 241
                   D    I     NL+ LDL DN I         LPNLK L L  N L   +P+
Sbjct: 129 -------TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPK 180

Query: 242 ELLESVIPIQELDLSGNGFT 261
            L      +  LDLSGN  +
Sbjct: 181 LLSNLSN-LNNLDLSGNKIS 199

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.76
PLN03150	623	hypothetical protein; Provisional	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.6
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.49
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.49
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.49
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.49
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.45
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.43
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.41
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.4
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.35
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.34
PLN03150	623	hypothetical protein; Provisional	99.33
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.91
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.84
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.77
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.54
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.54
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.49
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.23
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.04
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.01
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.65
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.61
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.58
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.37
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.26
PRK15386	426	type III secretion protein GogB; Provisional	97.23
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.21
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.1
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.45
KOG4308	478	consensus LRR-containing protein [Function unknown	96.29
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.61
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.28
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.18
smart00370	26	LRR Leucine-rich repeats, outliers.	94.18
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.05
KOG4308	478	consensus LRR-containing protein [Function unknown	92.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.69
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.63
smart00370	26	LRR Leucine-rich repeats, outliers.	90.63
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.97
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.84
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.16
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.15

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=3.7e-29  Score=238.62  Aligned_cols=240  Identities=35%  Similarity=0.571  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcCCCCCeEEEEcCCCCccc
Q 042660           10 FFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTG   89 (261)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~~~~~~~~L~l~~n~l~~   89 (261)
                      ++++.+++.+......++|..||++||+++ .+|.+. ...|...   .++ |  .|.||+|+....++.|++++|++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~-~~~w~~~---~~~-c--~w~gv~c~~~~~v~~L~L~~~~i~~   83 (968)
T PLN00113         12 LIFMLFFLFLNFSMLHAEELELLLSFKSSI-NDPLKY-LSNWNSS---ADV-C--LWQGITCNNSSRVVSIDLSGKNISG   83 (968)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHhC-CCCccc-CCCCCCC---CCC-C--cCcceecCCCCcEEEEEecCCCccc
Confidence            444444444455566779999999999999 577665 6889643   343 5  9999999876678899999999999


Q ss_pred             cCcccccCCCCCCEEECcCCcCcCCCCcccc-CCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhcc
Q 042660           90 RIVPALGSISSLQYLDLSNNKFIGPIPGRIT-DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMS  168 (261)
Q Consensus        90 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  168 (261)
                      .++..+..+++|+.|++++|.+.+.+|..+. .+.+|++|++++|.+++.+|.  +.+++|++|++++|.+.+..|..++
T Consensus        84 ~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~  161 (968)
T PLN00113         84 KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIG  161 (968)
T ss_pred             cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHh
Confidence            9999999999999999999999887776543 777788887777777655553  2355566666666666555555555


Q ss_pred             CCCCCCEEecccCcccccCCccccccccCC-------------------CCCccEEEcccCccCccCc-cCCCCCCCCEE
Q 042660          169 ELKNVEFVDLSFNRFHGGLGVGADNVSSIA-------------------NTNLEVLDLGDNGITGELP-SFGMLPNLKVL  228 (261)
Q Consensus       169 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------------~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L  228 (261)
                      .+++|++|++++|.+.+.+|..+..+..+.                   ..+|+.|++++|.+.+..| .++.+++|++|
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence            566666666666655555555444443220                   1234555555555555444 45555555555


Q ss_pred             EcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          229 RLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       229 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      ++++|.+++.+|..+ ..+.+|+.|++++|.+
T Consensus       242 ~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        242 DLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKL  272 (968)
T ss_pred             ECcCceeccccChhH-hCCCCCCEEECcCCee
Confidence            555555554444432 3345556666655543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=1.2e-21  Score=187.18  Aligned_cols=181  Identities=36%  Similarity=0.550  Sum_probs=103.2

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      +|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..++.+++|++|++++|.
T Consensus       144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            45555555555566666666667777777776666666666666666666666666666666666666666666666666


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccccccCC-------------------CCCccEEEcccCccCccCc-c
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-------------------NTNLEVLDLGDNGITGELP-S  218 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------------~~~L~~L~Ls~n~l~~~~~-~  218 (261)
                      +.+..|..++.+++|++|++++|.+++..|..+..+..+.                   ..+|+.|++++|.+.+.+| .
T Consensus       224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  303 (968)
T PLN00113        224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL  303 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence            6666666666666666666666666666665555543331                   1233444444444444433 3


Q ss_pred             CCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          219 FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       219 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +..+++|+.|++++|.+++.+|..+ ..+++|+.|++++|.+
T Consensus       304 ~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        304 VIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKF  344 (968)
T ss_pred             HcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCC
Confidence            4444444444444444444333322 2334455555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.82  E-value=7.8e-22  Score=161.74  Aligned_cols=199  Identities=24%  Similarity=0.249  Sum_probs=160.6

Q ss_pred             CCCCc---ceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEE
Q 042660           62 CPVSW---TGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYL  128 (261)
Q Consensus        62 c~~~~---~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  128 (261)
                      |.|+-   ..|.|..+          ...|+|+|..|+|+.+.+.+|+.+++|+.|||++|.|+.+.|.+|.+++.+.+|
T Consensus        41 C~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~L  120 (498)
T KOG4237|consen   41 CTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSL  120 (498)
T ss_pred             cccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHH
Confidence            45555   55888753          356799999999998889999999999999999999999999999999998887


Q ss_pred             EccC-CcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCC---------
Q 042660          129 NLSM-NGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA---------  198 (261)
Q Consensus       129 ~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~---------  198 (261)
                      .+.+ |+|+......|.++.+++.|.+.-|++.....+.|..++++..|.+..|.+.......+..+..++         
T Consensus       121 vlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  121 VLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             HhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence            7666 999986677788888888888877777777777777777777777777766532222222222221         


Q ss_pred             ------------------------------------------------------------------------CCCccEEE
Q 042660          199 ------------------------------------------------------------------------NTNLEVLD  206 (261)
Q Consensus       199 ------------------------------------------------------------------------~~~L~~L~  206 (261)
                                                                                              .++|++|+
T Consensus       201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln  280 (498)
T KOG4237|consen  201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN  280 (498)
T ss_pred             ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence                                                                                    46899999


Q ss_pred             cccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          207 LGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       207 Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      |++|++++..+ +|.+...++.|.|..|++. .+....|.++..|++|+|++|+||
T Consensus       281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  281 LSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             cCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeE
Confidence            99999998777 8999999999999999997 788888999999999999999875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.81  E-value=2.1e-21  Score=166.29  Aligned_cols=179  Identities=26%  Similarity=0.273  Sum_probs=118.8

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      +.+.|.|+.|+++...+..|+++++|+.|++..|+|.-..-..|.++++|+.|.+..|.+.....+.|..+.++++|+|+
T Consensus       198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~  277 (873)
T KOG4194|consen  198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE  277 (873)
T ss_pred             hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence            45577778888876667777778888888888887764444556666666666666666665555666666677777777


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCc
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQ  234 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~  234 (261)
                      .|++...-..++.++..|++|++++|.|...-++.|.-..     +|++|+|++|+++...+ .|..+..|+.|+|+.|.
T Consensus       278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-----kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-----KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             cchhhhhhcccccccchhhhhccchhhhheeecchhhhcc-----cceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence            7777666666666677777777777776655555554443     44777777777766555 56666666666666666


Q ss_pred             CcccCcHHHHhCCCCccEEEccCccC
Q 042660          235 LFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      ++ .+.+..|.++++|++|||++|.+
T Consensus       353 i~-~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  353 ID-HLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             hH-HHHhhHHHHhhhhhhhcCcCCeE
Confidence            65 56666666666666666666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.76  E-value=6.3e-19  Score=151.30  Aligned_cols=192  Identities=25%  Similarity=0.286  Sum_probs=140.6

Q ss_pred             CCCCcceEEcCCC---------------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCC
Q 042660           62 CPVSWTGVSCDPE---------------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLN  126 (261)
Q Consensus        62 c~~~~~gv~c~~~---------------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  126 (261)
                      |+|.-.-..|+..               ..+..|++++|.++..-+..|.++++|+++++..|.++ .+|........++
T Consensus        50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~  128 (873)
T KOG4194|consen   50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLE  128 (873)
T ss_pred             CCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccccccee
Confidence            5667777777642               12237999999999888888999999999999999998 5676555666788


Q ss_pred             EEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEE
Q 042660          127 YLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLD  206 (261)
Q Consensus       127 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~  206 (261)
                      .|+|.+|.|+....+++..++.|+.|||+.|.|+...-..|..-.++++|+|++|+|+..--..|..+.     +|..|.
T Consensus       129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-----sL~tlk  203 (873)
T KOG4194|consen  129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-----SLLTLK  203 (873)
T ss_pred             EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc-----hheeee
Confidence            888888888877777888888888888888888776666677777888888888888755444555553     457777


Q ss_pred             cccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          207 LGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       207 Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      |+.|+++..++ .|+.+++|+.|+|..|+|. .+..-.|.++.+|+.|.|..|.+
T Consensus       204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I  257 (873)
T KOG4194|consen  204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDI  257 (873)
T ss_pred             cccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCc
Confidence            77777776666 6777777777777777765 44334455555555555555554

>PLN03150 hypothetical protein; Provisional

Probab=99.71  E-value=1.2e-16  Score=145.09  Aligned_cols=158  Identities=26%  Similarity=0.394  Sum_probs=127.6

Q ss_pred             hcCChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCC-CCCCCcceEEcCCCC-----CeEEEEcCCCCccccCcccc
Q 042660           22 VLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTK-SCPVSWTGVSCDPES-----GSVNLSLSGNNFTGRIVPAL   95 (261)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~-~c~~~~~gv~c~~~~-----~~~~L~l~~n~l~~~~~~~~   95 (261)
                      .+..++|..||.++|+.+ .+|..   .+|.+.    .| .+.+.|.||.|....     ....|+|++|.+.|.+|..+
T Consensus       367 ~~t~~~~~~aL~~~k~~~-~~~~~---~~W~g~----~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i  438 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSL-GLPLR---FGWNGD----PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDI  438 (623)
T ss_pred             cccCchHHHHHHHHHHhc-CCccc---CCCCCC----CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHH
Confidence            344578999999999998 34432   368752    22 012489999995311     25589999999999999999


Q ss_pred             cCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCC-CCCC
Q 042660           96 GSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSEL-KNVE  174 (261)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~  174 (261)
                      ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|+.++.+++|+.|++++|.+.+.+|..+... .++.
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~  518 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA  518 (623)
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887654 4667


Q ss_pred             EEecccCcccccC
Q 042660          175 FVDLSFNRFHGGL  187 (261)
Q Consensus       175 ~L~l~~n~l~~~~  187 (261)
                      .+++.+|......
T Consensus       519 ~l~~~~N~~lc~~  531 (623)
T PLN03150        519 SFNFTDNAGLCGI  531 (623)
T ss_pred             eEEecCCccccCC
Confidence            8888888755433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=5.5e-19  Score=130.20  Aligned_cols=158  Identities=30%  Similarity=0.446  Sum_probs=134.9

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ..+.|.+++|.++ .+|+.++.+.+|+.|++.+|++. .+|.++..+++|++|++..|++. ..|..|+.++.|+.||+.
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            4457889999998 57778899999999999999998 68888999999999999999988 589999999999999999


Q ss_pred             cCcccc-ccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCc
Q 042660          156 KNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ  234 (261)
Q Consensus       156 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~  234 (261)
                      +|++.. .+|.-|..+..|+.|+++.|.+. .+|..++++.     +|+.|.+.+|.+-..+..++.+..|+.|.+++|.
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt-----~lqil~lrdndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT-----NLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc-----ceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence            998854 57888888889999999999985 6777788775     4599999999888554488889999999999999


Q ss_pred             CcccCcHHH
Q 042660          235 LFGMIPEEL  243 (261)
Q Consensus       235 l~~~~~~~~  243 (261)
                      ++ .+|+++
T Consensus       185 l~-vlppel  192 (264)
T KOG0617|consen  185 LT-VLPPEL  192 (264)
T ss_pred             ee-ecChhh
Confidence            98 788776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=6.5e-19  Score=129.82  Aligned_cols=157  Identities=31%  Similarity=0.498  Sum_probs=128.9

Q ss_pred             ccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCC
Q 042660           95 LGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE  174 (261)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  174 (261)
                      +.++.+++.|.+++|.++ ..|..+..+.+|+.|++++|++. .+|.+++.+++|+.|+++.|++ ...|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCCCchhh
Confidence            445678888999999998 55666788999999999999998 4888899999999999998888 67788899999999


Q ss_pred             EEecccCcccc-cCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEE
Q 042660          175 FVDLSFNRFHG-GLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL  253 (261)
Q Consensus       175 ~L~l~~n~l~~-~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  253 (261)
                      .||+.+|++.. .+|..+..+.     .|+.|+|++|.+.-.+|..+.+.+|+.|.++.|.+- ..|.++.. +..|+.|
T Consensus       106 vldltynnl~e~~lpgnff~m~-----tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt~lrel  178 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMT-----TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LTRLREL  178 (264)
T ss_pred             hhhccccccccccCCcchhHHH-----HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHH-HHHHHHH
Confidence            99999998864 4566665554     458899999999866668899999999999999887 78888743 5678888


Q ss_pred             EccCccCC
Q 042660          254 DLSGNGFT  261 (261)
Q Consensus       254 ~L~~N~ls  261 (261)
                      .+++|+++
T Consensus       179 hiqgnrl~  186 (264)
T KOG0617|consen  179 HIQGNRLT  186 (264)
T ss_pred             hcccceee
Confidence            88888764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.60  E-value=3.1e-17  Score=142.36  Aligned_cols=173  Identities=28%  Similarity=0.318  Sum_probs=100.6

Q ss_pred             EEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660           78 VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN  157 (261)
Q Consensus        78 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  157 (261)
                      ..|||++|+++ ..|..+....++-+|++++|+|..+....|.++..|-.||||+|++. .+|+.+..+..|++|+|++|
T Consensus       106 t~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  106 TILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             eeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCC
Confidence            35666666666 45666666666666666666666444444556666666666666665 35555566666666666666


Q ss_pred             cccc-------------------------ccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCcc
Q 042660          158 KLWG-------------------------DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGI  212 (261)
Q Consensus       158 ~l~~-------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l  212 (261)
                      .+.-                         .+|.++-.+.+|+.+|++.|.+. ..|+.+.++.     +|+.|+||+|.|
T Consensus       184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-----~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-----NLRRLNLSGNKI  257 (1255)
T ss_pred             hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-----hhheeccCcCce
Confidence            5422                         24444445555556666655553 3344444332     446667777766


Q ss_pred             CccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          213 TGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       213 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +..-...+.+.+|+.|+++.|+++ .+|..+.+ +++|+.|.+.+|++
T Consensus       258 teL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  258 TELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKL  303 (1255)
T ss_pred             eeeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcc
Confidence            644334455666666777777766 56665543 45666666666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.59  E-value=7.2e-17  Score=140.11  Aligned_cols=174  Identities=25%  Similarity=0.291  Sum_probs=119.7

Q ss_pred             EEEcCCCCccc-cCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660           79 NLSLSGNNFTG-RIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN  157 (261)
Q Consensus        79 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  157 (261)
                      .+++..|++.. .+|+.+..+..|+.||+++|++. ..|..+..-+++-+|+||+|+|..+.-..|-+++.|-.|||++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            57788888864 48889999999999999999999 78888888899999999999998644445678899999999999


Q ss_pred             ccccccchhccCCCCCCEEecccCcccccCCccccccccCC-----------------------CCCccEEEcccCccCc
Q 042660          158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-----------------------NTNLEVLDLGDNGITG  214 (261)
Q Consensus       158 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-----------------------~~~L~~L~Ls~n~l~~  214 (261)
                      ++ ..+|.....+..|++|+|++|.+..-   .+.+++++.                       ..+|..+|+|.|.+. 
T Consensus       161 rL-e~LPPQ~RRL~~LqtL~Ls~NPL~hf---QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-  235 (1255)
T KOG0444|consen  161 RL-EMLPPQIRRLSMLQTLKLSNNPLNHF---QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-  235 (1255)
T ss_pred             hh-hhcCHHHHHHhhhhhhhcCCChhhHH---HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence            99 55666678888999999999977421   111222210                       124455566666555 


Q ss_pred             cCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          215 ELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       215 ~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      ..| .+..+++|+.|+|++|+|+ .+.... ..+.+|.+|++|.|++
T Consensus       236 ~vPecly~l~~LrrLNLS~N~it-eL~~~~-~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGNKIT-ELNMTE-GEWENLETLNLSRNQL  280 (1255)
T ss_pred             cchHHHhhhhhhheeccCcCcee-eeeccH-HHHhhhhhhccccchh
Confidence            333 5555556666666666555 222211 1123555566665554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.49  E-value=2.6e-13  Score=124.65  Aligned_cols=166  Identities=25%  Similarity=0.382  Sum_probs=92.2

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|+++. +|..+.  .+|++|++++|.++. +|..+.  ..|+.|++++|.+. .+|..+.  .+|+.|+++
T Consensus       200 ~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            34467777777763 444333  367777777777663 444332  35666666666666 3454443  356777777


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccCCcccc--------------ccccCCCCCccEEEcccCccCccCccCCC
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGAD--------------NVSSIANTNLEVLDLGDNGITGELPSFGM  221 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--------------~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~  221 (261)
                      +|++.. +|..+.  ++|+.|++++|.+++ +|..+.              .++....++|+.|++++|.+++.+..+  
T Consensus       271 ~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--  344 (754)
T PRK15370        271 HNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--  344 (754)
T ss_pred             CCccCc-cccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh--
Confidence            776653 444332  367777777776653 222111              000001235666666666666433233  


Q ss_pred             CCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          222 LPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       222 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      .++|+.|++++|+|+ .+|..+   .++|+.|++++|.+
T Consensus       345 ~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~L  379 (754)
T PRK15370        345 PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNAL  379 (754)
T ss_pred             cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcC
Confidence            246777777777776 566544   24667777777665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.49  E-value=4.5e-15  Score=124.78  Aligned_cols=186  Identities=28%  Similarity=0.319  Sum_probs=112.7

Q ss_pred             CCeEEEEcCCCCccccCcccccCCCC---CCEEECcCCcCcC----CCCccccCC-CCCCEEEccCCcCcCC----CCcc
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSISS---LQYLDLSNNKFIG----PIPGRITDL-WGLNYLNLSMNGFKGG----FPGN  142 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~  142 (261)
                      .....|++++|.+.+..+..+..+..   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            35667888888887655555544444   8888888887763    222334555 7788888888887732    2334


Q ss_pred             ccCCCCCCEEEcccCccccc----cchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-
Q 042660          143 LRNLQQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-  217 (261)
Q Consensus       143 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-  217 (261)
                      +..+++|++|++++|.+.+.    ++..+...++|++|++++|.+.+.....+..... ..++|++|++++|.+++... 
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~-~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA-SLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc-ccCCCCEEecCCCcCchHHHH
Confidence            55667788888888877642    3334455668888888888776432222211110 12456888888887765211 


Q ss_pred             cC-----CCCCCCCEEEcccCcCcccCcHH---HHhCCCCccEEEccCccCC
Q 042660          218 SF-----GMLPNLKVLRLGSNQLFGMIPEE---LLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       218 ~~-----~~~~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~L~~N~ls  261 (261)
                      .+     ...+.|+.|++++|.+++.....   .+...++|+.+++++|+++
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            11     12357888888888776322221   2233357788888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.49  E-value=2e-16  Score=130.69  Aligned_cols=171  Identities=30%  Similarity=0.403  Sum_probs=74.4

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .++.++|.+. .+|+.+..+..+..++.++|.+. .+|+.++.+..+..++..+|.++. .|+.++.+.++..+++.+|+
T Consensus        95 ~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~  171 (565)
T KOG0472|consen   95 SLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNK  171 (565)
T ss_pred             HhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccc
Confidence            4455555554 34445555555555555555544 333334444444444444444442 33333333333333333333


Q ss_pred             cccc----------------------cchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660          159 LWGD----------------------IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL  216 (261)
Q Consensus       159 l~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  216 (261)
                      +...                      +|+.++.+.+|..|++..|.+. .+| .|..++     .|++++++.|++.-.+
T Consensus       172 l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs-----~L~Elh~g~N~i~~lp  244 (565)
T KOG0472|consen  172 LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCS-----LLKELHVGENQIEMLP  244 (565)
T ss_pred             hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccH-----HHHHHHhcccHHHhhH
Confidence            3222                      2333333333333333333332 112 122221     2355555555554222


Q ss_pred             c-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          217 P-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       217 ~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      . ...+++++..|||+.|+++ .+|.+++. +++|..||+|+|.||
T Consensus       245 ae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  245 AEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS  288 (565)
T ss_pred             HHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc
Confidence            2 2335555555555555555 55555432 345555555555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.49  E-value=8.8e-15  Score=123.04  Aligned_cols=184  Identities=30%  Similarity=0.351  Sum_probs=134.3

Q ss_pred             CeEEEEcCCCCccc------cCcccccCCCCCCEEECcCCcCcCCCCccccCCCC---CCEEEccCCcCcC----CCCcc
Q 042660           76 GSVNLSLSGNNFTG------RIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWG---LNYLNLSMNGFKG----GFPGN  142 (261)
Q Consensus        76 ~~~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~p~~  142 (261)
                      ....++++++.+.+      .++..+..+++|++|++++|.+.+..+..+..+..   |++|++++|++++    .+...
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence            45678888887762      23456777889999999999998666666655555   9999999999873    23344


Q ss_pred             ccCC-CCCCEEEcccCccccc----cchhccCCCCCCEEecccCcccccCCcccc-ccccCCCCCccEEEcccCccCccC
Q 042660          143 LRNL-QQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFHGGLGVGAD-NVSSIANTNLEVLDLGDNGITGEL  216 (261)
Q Consensus       143 ~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~~l~~~~L~~L~Ls~n~l~~~~  216 (261)
                      +..+ ++|+.|++++|.+++.    .+..+..++.|++|++++|.+++.....+. .+..  .++|++|++++|.+++..
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~  209 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA--NCNLEVLDLNNNGLTDEG  209 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh--CCCCCEEeccCCccChHH
Confidence            5566 8999999999999743    445567778999999999999753211111 1211  257899999999987532


Q ss_pred             ----c-cCCCCCCCCEEEcccCcCcccCcHHHHhC----CCCccEEEccCccCC
Q 042660          217 ----P-SFGMLPNLKVLRLGSNQLFGMIPEELLES----VIPIQELDLSGNGFT  261 (261)
Q Consensus       217 ----~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~L~~N~ls  261 (261)
                          + .+..+++|+.|++++|.+++.....+...    ...|+.|++++|.++
T Consensus       210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence                2 45678899999999999986444444433    268999999999874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.45  E-value=4.4e-16  Score=128.65  Aligned_cols=174  Identities=30%  Similarity=0.422  Sum_probs=137.6

Q ss_pred             eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEccc
Q 042660           77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK  156 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  156 (261)
                      .+.+++++|++. ..|++++.+..++.++.++|++. .+|+++..+.++..++.++|++. ..|+.++.+..+..++..+
T Consensus        70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~  146 (565)
T KOG0472|consen   70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATN  146 (565)
T ss_pred             eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccc
Confidence            458899999998 68889999999999999999999 78999999999999999999998 5888899999999999999


Q ss_pred             CccccccchhccCCCCCCEEecccCcccc----------------------cCCccccccccCCCCCccEEEcccCccCc
Q 042660          157 NKLWGDIGGIMSELKNVEFVDLSFNRFHG----------------------GLGVGADNVSSIANTNLEVLDLGDNGITG  214 (261)
Q Consensus       157 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~  214 (261)
                      |++.. .|+.+..+.++..+++.+|.+..                      .+|..++.+.     +|+-|+|..|.+. 
T Consensus       147 N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~-----~L~~LyL~~Nki~-  219 (565)
T KOG0472|consen  147 NQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLE-----SLELLYLRRNKIR-  219 (565)
T ss_pred             ccccc-CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchh-----hhHHHHhhhcccc-
Confidence            99955 44445555555555555554442                      4444454443     3466777777776 


Q ss_pred             cCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          215 ELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       215 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      ..|.|.++..|.+|+++.|+|. .+|.+..+++.++..||+.+|+++
T Consensus       220 ~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  220 FLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             cCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence            5567777777888888888887 788888888889999999999874

>PLN03210 Resistant to P

Probab=99.43  E-value=2e-12  Score=125.41  Aligned_cols=178  Identities=23%  Similarity=0.293  Sum_probs=104.6

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      +.+.|++.++.+. .++..+..+++|+.++++++.....+|. +..+++|++|++++|..-..+|..+..+++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            4456777777766 4566666777777777777654445553 5667777777777766545677777777777777777


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccC--------------------Cccc--ccccc-----------------
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGL--------------------GVGA--DNVSS-----------------  196 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------p~~~--~~~~~-----------------  196 (261)
                      +|.....+|..+ ++++|+.|++++|...+.+                    |..+  ..+..                 
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP  768 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence            765444455433 4455555555554332222                    2111  00000                 


Q ss_pred             ------CCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660          197 ------IANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN  258 (261)
Q Consensus       197 ------l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N  258 (261)
                            ..+++|+.|++++|...+.+| .++.+++|+.|++++|..-+.+|..+  .+++|+.|++++|
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c  835 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGC  835 (1153)
T ss_pred             cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCC
Confidence                  002356777777776555566 67777778888887764333555543  3445555555554

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.41  E-value=1.7e-12  Score=118.94  Aligned_cols=76  Identities=26%  Similarity=0.248  Sum_probs=51.5

Q ss_pred             CCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCcc
Q 042660          172 NVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQ  251 (261)
Q Consensus       172 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  251 (261)
                      +|+.|++++|.+++ +|..        ..+|+.|++++|++++.+..   ..+|+.|++++|+++ .+|..+ ..+.+|+
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l--------~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl-~~L~~L~  448 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL--------PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESL-IHLSSET  448 (788)
T ss_pred             ccceEEecCCcccC-CCCc--------ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHH-hhccCCC
Confidence            45566666666552 2221        13567888888887753322   246778888889988 788775 3567899


Q ss_pred             EEEccCccCC
Q 042660          252 ELDLSGNGFT  261 (261)
Q Consensus       252 ~L~L~~N~ls  261 (261)
                      .|++++|+|+
T Consensus       449 ~LdLs~N~Ls  458 (788)
T PRK15387        449 TVNLEGNPLS  458 (788)
T ss_pred             eEECCCCCCC
Confidence            9999999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.41  E-value=4.4e-13  Score=123.09  Aligned_cols=76  Identities=28%  Similarity=0.413  Sum_probs=41.7

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      +...|++++|+++ .+|..+.  ..|+.|++++|.+. .+|..+.  .+|+.|++++|.++. +|..+.  .+|+.|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECC
Confidence            4456777777776 3444332  35666666666665 3444332  356666666666653 444332  355566666


Q ss_pred             cCccc
Q 042660          156 KNKLW  160 (261)
Q Consensus       156 ~n~l~  160 (261)
                      +|+++
T Consensus       292 ~N~Lt  296 (754)
T PRK15370        292 DNSIR  296 (754)
T ss_pred             CCccc
Confidence            55554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.40  E-value=5.7e-15  Score=121.79  Aligned_cols=177  Identities=25%  Similarity=0.258  Sum_probs=131.5

Q ss_pred             EEEEcCCCCccccCcccccCCCCCCEEECcC-CcCcCCCCccccCCCC------------------------CCEEEccC
Q 042660           78 VNLSLSGNNFTGRIVPALGSISSLQYLDLSN-NKFIGPIPGRITDLWG------------------------LNYLNLSM  132 (261)
Q Consensus        78 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~------------------------L~~L~l~~  132 (261)
                      .+|||++|+|+-+-|.+|.+++.+..|-+.+ |+|+......|.++..                        +..|.+.+
T Consensus        94 RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD  173 (498)
T KOG4237|consen   94 RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD  173 (498)
T ss_pred             ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc
Confidence            3899999999999999999999887776665 8887655555555544                        44445555


Q ss_pred             CcCcCCCCccccCCCCCCEEEcccCccc----------------------------------------------------
Q 042660          133 NGFKGGFPGNLRNLQQLKVLDLRKNKLW----------------------------------------------------  160 (261)
Q Consensus       133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~----------------------------------------------------  160 (261)
                      |.+.......|..+..++.+.+..|.+.                                                    
T Consensus       174 n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s  253 (498)
T KOG4237|consen  174 NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS  253 (498)
T ss_pred             hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH
Confidence            5554322235556666666666555410                                                    


Q ss_pred             ---------cccc-hhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEE
Q 042660          161 ---------GDIG-GIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLR  229 (261)
Q Consensus       161 ---------~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~  229 (261)
                               +..| ..|..+++|+.|++++|.+++.-+..|.....     +++|+|..|++..... .|.++..|+.|+
T Consensus       254 ~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~-----l~eL~L~~N~l~~v~~~~f~~ls~L~tL~  328 (498)
T KOG4237|consen  254 RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE-----LQELYLTRNKLEFVSSGMFQGLSGLKTLS  328 (498)
T ss_pred             hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh-----hhhhhcCcchHHHHHHHhhhccccceeee
Confidence                     0011 23456889999999999999887777777764     5999999999986555 788999999999


Q ss_pred             cccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          230 LGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      |++|+|+ .+.+..|..+..|.+|.+-.|+|
T Consensus       329 L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  329 LYDNQIT-TVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ecCCeeE-EEecccccccceeeeeehccCcc
Confidence            9999999 67777788888999999999886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.37  E-value=2.7e-14  Score=128.69  Aligned_cols=130  Identities=32%  Similarity=0.354  Sum_probs=90.7

Q ss_pred             CCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCC
Q 042660          122 LWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTN  201 (261)
Q Consensus       122 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~  201 (261)
                      ++.|+.|++.+|.++...-+.+-+..+|+.|+|++|++.......+.++..|++|+|++|+++ .+|..+..+.     .
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~-----~  431 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG-----R  431 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh-----h
Confidence            334677777777777666666777788888888888886565666778888888888888886 5566665554     3


Q ss_pred             ccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660          202 LEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG  259 (261)
Q Consensus       202 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (261)
                      |++|...+|++. ..|.+..+++|+.+|++.|+++...-++.. ..++|++||+++|.
T Consensus       432 L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  432 LHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             hHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            477888888877 445777778888888888887632222221 12578888888875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.35  E-value=1.1e-11  Score=113.62  Aligned_cols=32  Identities=34%  Similarity=0.433  Sum_probs=17.5

Q ss_pred             CCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          224 NLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +|+.|++++|.|+ .+|..    ..+|+.|++++|.|
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~L  414 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL----PSELKELMVSGNRL  414 (788)
T ss_pred             ccceEEecCCccc-CCCCc----ccCCCEEEccCCcC
Confidence            4556666666665 34421    23566666666655

>PLN03210 Resistant to P

Probab=99.35  E-value=1.5e-11  Score=119.42  Aligned_cols=54  Identities=26%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             CccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660          201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN  258 (261)
Q Consensus       201 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N  258 (261)
                      +|+.|++++|......|..  ..+|+.|+|++|.++ .+|..+ ..+++|+.|++++|
T Consensus       826 sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si-~~l~~L~~L~L~~C  879 (1153)
T PLN03210        826 SLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE-EVPWWI-EKFSNLSFLDMNGC  879 (1153)
T ss_pred             ccCEEECCCCCcccccccc--ccccCEeECCCCCCc-cChHHH-hcCCCCCEEECCCC
Confidence            3455555554332233311  245777777777777 676654 45678888888874

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.34  E-value=2.1e-14  Score=123.44  Aligned_cols=159  Identities=30%  Similarity=0.364  Sum_probs=76.7

Q ss_pred             EEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660           78 VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN  157 (261)
Q Consensus        78 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  157 (261)
                      +..|++.|++. .+|..+..+..|+.+.+.+|.+. .+|..+.++..|++++++.|+++ .+|..+..++ |+.|.+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            34555666555 34444444444555555555544 34444555555555555555554 2444444443 455555555


Q ss_pred             ccccccchhccCCCCCCEEecccCcccccCCccccccccCC-----------------CCCccEEEcccCccCccCccCC
Q 042660          158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-----------------NTNLEVLDLGDNGITGELPSFG  220 (261)
Q Consensus       158 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-----------------~~~L~~L~Ls~n~l~~~~~~~~  220 (261)
                      ++ +.+|..++..+.|..||.+.|++. ++|..+..+.++.                 .-.|..||+|.|++..++-.|.
T Consensus       154 kl-~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr  231 (722)
T KOG0532|consen  154 KL-TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFR  231 (722)
T ss_pred             cc-ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhh
Confidence            54 333444444445555555555543 2333333332220                 0134556666666653322555


Q ss_pred             CCCCCCEEEcccCcCcccCcHHH
Q 042660          221 MLPNLKVLRLGSNQLFGMIPEEL  243 (261)
Q Consensus       221 ~~~~L~~L~L~~n~l~~~~~~~~  243 (261)
                      .+.+|++|-|.+|.+. .-|.++
T Consensus       232 ~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             hhhhheeeeeccCCCC-CChHHH
Confidence            6666666666666665 344444

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=4.1e-12  Score=115.71  Aligned_cols=114  Identities=27%  Similarity=0.400  Sum_probs=89.8

Q ss_pred             CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660          100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS  179 (261)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  179 (261)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCcccccCCccccccccCCCCCccEEEcccCccCccCc
Q 042660          180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP  217 (261)
Q Consensus       180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~  217 (261)
                      +|.++|.+|..+....    .++..+++.+|...+..|
T Consensus       499 ~N~l~g~iP~~l~~~~----~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRL----LHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhcc----ccCceEEecCCccccCCC
Confidence            8888888887765432    244677777776544333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.32  E-value=6.5e-14  Score=126.31  Aligned_cols=156  Identities=30%  Similarity=0.390  Sum_probs=85.4

Q ss_pred             CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660          100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS  179 (261)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  179 (261)
                      +++++++++|++++ +|+.+..+.+|+.+...+|+++ .+|..+..+.+|+.+....|.+. -+|......+.|++|+|.
T Consensus       242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence            45555555555553 3355555555555555555554 34555555555555555555552 233334445555555555


Q ss_pred             cCcccccCCccccccccC---------------------CCCCccEEEcccCccCcc-CccCCCCCCCCEEEcccCcCcc
Q 042660          180 FNRFHGGLGVGADNVSSI---------------------ANTNLEVLDLGDNGITGE-LPSFGMLPNLKVLRLGSNQLFG  237 (261)
Q Consensus       180 ~n~l~~~~p~~~~~~~~l---------------------~~~~L~~L~Ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~  237 (261)
                      .|++.. +|+.+-.....                     ..+.|+.|++.+|.+++. .|.+.+..+|+.|+|++|.+. 
T Consensus       319 ~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-  396 (1081)
T KOG0618|consen  319 SNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-  396 (1081)
T ss_pred             hccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence            555432 22211111100                     023567777777777653 446666777777777777776 


Q ss_pred             cCcHHHHhCCCCccEEEccCccC
Q 042660          238 MIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       238 ~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      .+|...+..+..|+.|+||+|++
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKL  419 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchh
Confidence            67776666666777777777765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.21  E-value=1.1e-11  Score=94.21  Aligned_cols=128  Identities=29%  Similarity=0.291  Sum_probs=43.2

Q ss_pred             cCCCCCCEEECcCCcCcCCCCcccc-CCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCC
Q 042660           96 GSISSLQYLDLSNNKFIGPIPGRIT-DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE  174 (261)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  174 (261)
                      .+...+++|++.+|.|+.+.  .++ .+.+|+.|++++|.++. + +.+..++.|++|++++|.++...+.....+++|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccccc--chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            34456788888888887432  243 46778888888888874 2 2466778888888888888654333234577888


Q ss_pred             EEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc----cCCCCCCCCEEEcc
Q 042660          175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP----SFGMLPNLKVLRLG  231 (261)
Q Consensus       175 ~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~~~L~~L~L~  231 (261)
                      +|++++|++...  ..+..+..  .++|+.|+|.+|.++...-    .+..+|+|+.||-.
T Consensus        92 ~L~L~~N~I~~l--~~l~~L~~--l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDL--NELEPLSS--LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SC--CCCGGGGG---TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCCh--HHhHHHHc--CCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            888888887531  12333332  2567777777777764322    34556777776543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=2.5e-11  Score=105.22  Aligned_cols=172  Identities=37%  Similarity=0.499  Sum_probs=122.1

Q ss_pred             CeEEEEcCCCCccccCcccccCCC-CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSIS-SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      ....+++.+|+++ .+++....+. +|+.|++++|++. .+|..+..++.|+.|++++|.++. +|...+..+.|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheec
Confidence            3457888888888 4555666664 8888888888888 444556788888888888888884 5665557788888888


Q ss_pred             ccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCc
Q 042660          155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ  234 (261)
Q Consensus       155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~  234 (261)
                      ++|++.. +|........|+.+.+++|.+. ..+..+...     .++..+.+.+|++...+..++.++.++.|++++|.
T Consensus       194 s~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~-----~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         194 SGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNL-----KNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             cCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhc-----ccccccccCCceeeeccchhccccccceecccccc
Confidence            8888844 4444344556888888888532 223333333     34577778888877543466777889999999999


Q ss_pred             CcccCcHHHHhCCCCccEEEccCccC
Q 042660          235 LFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      ++ .++.  +....+++.|++++|.+
T Consensus       267 i~-~i~~--~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         267 IS-SISS--LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cc-cccc--ccccCccCEEeccCccc
Confidence            98 5655  44556889999988865

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=4.6e-12  Score=109.27  Aligned_cols=144  Identities=29%  Similarity=0.385  Sum_probs=95.9

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .++|+.|+++ .+|..++.++ |+.|-+++|+++ .+|..++.+..|..|+.+.|.+.. +|..++++.+|+.|.+..|.
T Consensus       125 ~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~  200 (722)
T KOG0532|consen  125 FLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNH  200 (722)
T ss_pred             Hhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhh
Confidence            4566666665 4555555544 566666666666 455556666666667777776663 56666667777777777776


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccC---CCCCCCCEEEcccCc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSF---GMLPNLKVLRLGSNQ  234 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~~~L~~L~L~~n~  234 (261)
                      +. .+|+.+..++ |..||++.|+++ .+|..|.++.     .|++|-|.+|.+...+..+   +...-.++|+.+.++
T Consensus       201 l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~-----~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  201 LE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMR-----HLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhh-----hheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            63 3455555444 888999999997 7888888885     5599999999998443332   233346778887774

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=7.1e-11  Score=89.78  Aligned_cols=128  Identities=29%  Similarity=0.310  Sum_probs=50.9

Q ss_pred             ccCCCCCCEEEccCCcCcCCCCcccc-CCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccc-ccccc
Q 042660          119 ITDLWGLNYLNLSMNGFKGGFPGNLR-NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGA-DNVSS  196 (261)
Q Consensus       119 ~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~~~~  196 (261)
                      +.+..++++|+|.+|.|+. + +.++ .+.+|+.|++++|.+....  .+..++.|++|++++|.++.. +..+ ..+  
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~l--   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNL--   87 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH---
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhC--
Confidence            3455678999999999985 2 3455 5789999999999997642  467789999999999999732 2222 123  


Q ss_pred             CCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCcccC--cHHHHhCCCCccEEEcc
Q 042660          197 IANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMI--PEELLESVIPIQELDLS  256 (261)
Q Consensus       197 l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~L~  256 (261)
                         ++|++|++++|++.....  .+..+++|+.|++.+|+++..-  ...++..+++|+.||-.
T Consensus        88 ---p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   88 ---PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             ---TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ---CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence               577999999999986433  6778999999999999998432  23355667899988753

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=1.5e-11  Score=98.85  Aligned_cols=131  Identities=33%  Similarity=0.365  Sum_probs=102.2

Q ss_pred             CCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660           97 SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV  176 (261)
Q Consensus        97 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  176 (261)
                      ....|+++|+++|.|+ .+.++..-.|.++.|++++|++..  -+.+..+++|+.||+++|.+ ..+..+-..+.+++.|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchh-HhhhhhHhhhcCEeee
Confidence            3456888999999998 566677778899999999999874  23377889999999999988 4445566678889999


Q ss_pred             ecccCcccccCCccccccccCCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCccc
Q 042660          177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGM  238 (261)
Q Consensus       177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~  238 (261)
                      .+++|.+.     +++.+.++  -+|..||+++|+|.....  .++++|-|+++.|.+|.+.+.
T Consensus       358 ~La~N~iE-----~LSGL~KL--YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  358 KLAQNKIE-----TLSGLRKL--YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ehhhhhHh-----hhhhhHhh--hhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            99999884     33333333  356999999999986443  789999999999999999743

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=3.1e-10  Score=71.24  Aligned_cols=59  Identities=36%  Similarity=0.432  Sum_probs=28.9

Q ss_pred             CCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCc
Q 042660          124 GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR  182 (261)
Q Consensus       124 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  182 (261)
                      +|++|++++|+++...+..|.++++|++|++++|.+....+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34445555554444333444455555555555555544444445555555555555444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=2.7e-10  Score=71.54  Aligned_cols=61  Identities=39%  Similarity=0.517  Sum_probs=50.6

Q ss_pred             CCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660           99 SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL  159 (261)
Q Consensus        99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  159 (261)
                      ++|++|++++|++..+.+..|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678888888888877777888888888888888888877777888888888888888865

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.3e-10  Score=96.07  Aligned_cols=177  Identities=24%  Similarity=0.199  Sum_probs=106.6

Q ss_pred             EEEcCCCCccccCc-ccccCCCCCCEEECcCCcCcCCC--CccccCCCCCCEEEccCCcCcCCCCccc-cCCCCCCEEEc
Q 042660           79 NLSLSGNNFTGRIV-PALGSISSLQYLDLSNNKFIGPI--PGRITDLWGLNYLNLSMNGFKGGFPGNL-RNLQQLKVLDL  154 (261)
Q Consensus        79 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l  154 (261)
                      ++.|.+..+....- .....+++++.||+++|-+....  -.....+++|+.|+++.|++........ ..+++|+.|.+
T Consensus       125 ~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l  204 (505)
T KOG3207|consen  125 EISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVL  204 (505)
T ss_pred             heeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEe
Confidence            55666666653211 35567788888888888776321  1223568888888888888753222211 24577888888


Q ss_pred             ccCccccccc-hhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC--ccCCCCCCCCEEEcc
Q 042660          155 RKNKLWGDIG-GIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL--PSFGMLPNLKVLRLG  231 (261)
Q Consensus       155 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~~~L~~L~L~  231 (261)
                      +.|.++.... ..+..+|+|+.|++..|.....     ...+.--++.|++|+|++|++....  +..+.++.|+.|+++
T Consensus       205 ~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-----~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  205 NSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-----KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             ccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-----ecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            8888764432 3345678888888887753211     1111111245688888888776544  356677777777777


Q ss_pred             cCcCcccCcHHH-----HhCCCCccEEEccCccC
Q 042660          232 SNQLFGMIPEEL-----LESVIPIQELDLSGNGF  260 (261)
Q Consensus       232 ~n~l~~~~~~~~-----~~~~~~L~~L~L~~N~l  260 (261)
                      .+.+...--++.     ....++|+.|+++.|++
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            777653211111     22335777777777776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.91  E-value=1.1e-09  Score=94.99  Aligned_cols=170  Identities=36%  Similarity=0.461  Sum_probs=125.9

Q ss_pred             EEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCC-CCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           80 LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLW-GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        80 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      ++...+.+.. ....+..++.++.|++.+|.++. ++.....+. +|+.|++++|.+.. +|..+..++.|+.|++++|+
T Consensus        98 l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          98 LDLNLNRLRS-NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eecccccccc-CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCch
Confidence            5666666642 23344556789999999999994 444555664 89999999999984 66778899999999999999


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCccc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM  238 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~  238 (261)
                      +.. +|...+..+.|+.|++++|.++ .+|......     ..|+++.+++|.+...+..+..+..+..+.+.+|++. .
T Consensus       175 l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~-----~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~  246 (394)
T COG4886         175 LSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL-----SALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-D  246 (394)
T ss_pred             hhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhh-----hhhhhhhhcCCcceecchhhhhcccccccccCCceee-e
Confidence            954 4444457889999999999997 333332222     2469999999975545557788888889999999987 3


Q ss_pred             CcHHHHhCCCCccEEEccCccCC
Q 042660          239 IPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       239 ~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      .+ .....+..++.|++++|.++
T Consensus       247 ~~-~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         247 LP-ESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             cc-chhccccccceecccccccc
Confidence            32 33345667999999999874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=2.9e-10  Score=95.47  Aligned_cols=181  Identities=23%  Similarity=0.215  Sum_probs=122.7

Q ss_pred             CeEEEEcCCCCcccc--CcccccCCCCCCEEECcCCcCcCCCCccc-cCCCCCCEEEccCCcCcCCC-CccccCCCCCCE
Q 042660           76 GSVNLSLSGNNFTGR--IVPALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKGGF-PGNLRNLQQLKV  151 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~  151 (261)
                      ....|||+.|-+...  +..-...+++|+.|+++.|.+........ ..++.|+.|.++.|.++... -.....+|+|+.
T Consensus       147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~  226 (505)
T KOG3207|consen  147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV  226 (505)
T ss_pred             cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHH
Confidence            556899999988753  22334578999999999999874433322 35788999999999987422 223346789999


Q ss_pred             EEcccCccccccchhccCCCCCCEEecccCcccccCC-ccccccccCCCCCccEEEcccCccCcc-CccC------CCCC
Q 042660          152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG-VGADNVSSIANTNLEVLDLGDNGITGE-LPSF------GMLP  223 (261)
Q Consensus       152 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~l~~~~L~~L~Ls~n~l~~~-~~~~------~~~~  223 (261)
                      |++..|.....-......++.|+.|||++|++-.... ...+.     .+.|+.|.++.+++... .|..      ..++
T Consensus       227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~-----l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  227 LYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT-----LPGLNQLNLSSTGIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             hhhhcccccceecchhhhhhHHhhccccCCccccccccccccc-----ccchhhhhccccCcchhcCCCccchhhhcccc
Confidence            9999996444444455667889999999998853211 11222     35678889998888763 2222      4578


Q ss_pred             CCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          224 NLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +|++|++..|++.+.-...-...+.+|+.|.+..|.++
T Consensus       302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            89999999999963222222233456777776666653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=2.4e-10  Score=91.92  Aligned_cols=130  Identities=25%  Similarity=0.290  Sum_probs=97.1

Q ss_pred             CCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCC
Q 042660          121 DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANT  200 (261)
Q Consensus       121 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~  200 (261)
                      ....|+++|+++|.|+ .+.++..-.++++.|++++|.+....  .++.+++|+.||+++|.++...     .+ .....
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~-----Gw-h~KLG  352 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECV-----GW-HLKLG  352 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhh-----hh-Hhhhc
Confidence            3457899999999998 47777788899999999999995543  3788999999999999987321     11 11124


Q ss_pred             CccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcH-HHHhCCCCccEEEccCccCC
Q 042660          201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPE-ELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       201 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +.+.|.|++|.+. ....+..+-+|..|++++|+|. ...+ .-+..++-|.++.|.+|+++
T Consensus       353 NIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  353 NIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             CEeeeehhhhhHh-hhhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence            6699999999987 4445667778999999999996 3321 12344567888888898874

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.77  E-value=1.5e-09  Score=88.80  Aligned_cols=18  Identities=33%  Similarity=0.482  Sum_probs=8.2

Q ss_pred             CCCCCCCCEEEcccCcCc
Q 042660          219 FGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       219 ~~~~~~L~~L~L~~n~l~  236 (261)
                      +..+++|+.+++++|.+.
T Consensus       237 L~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             hcccchheeecccccccc
Confidence            334444444444444444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.71  E-value=3.1e-09  Score=86.96  Aligned_cols=185  Identities=26%  Similarity=0.257  Sum_probs=127.3

Q ss_pred             CCeEEEEcCCCCcccc----CcccccCCCCCCEEECcCCcC---cCCCCc-------cccCCCCCCEEEccCCcCcCCCC
Q 042660           75 SGSVNLSLSGNNFTGR----IVPALGSISSLQYLDLSNNKF---IGPIPG-------RITDLWGLNYLNLSMNGFKGGFP  140 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l---~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~p  140 (261)
                      ...+.++|++|.+...    +...+.+.+.|+..++++-.-   ...+|.       ++...++|++++||+|.+....+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            3556899999999754    455567778888888875432   223443       34567799999999999875545


Q ss_pred             ccc----cCCCCCCEEEcccCccccccc-------------hhccCCCCCCEEecccCcccccCCccccccccCCCCCcc
Q 042660          141 GNL----RNLQQLKVLDLRKNKLWGDIG-------------GIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLE  203 (261)
Q Consensus       141 ~~~----~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~  203 (261)
                      ..|    ..+..|++|.|.+|.+...-.             +..+.-+.|+++..++|++....-..+...- -..+.|+
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~-~~~~~le  188 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF-QSHPTLE  188 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH-Hhccccc
Confidence            443    467899999999998843322             2234457899999999998533222222211 1135789


Q ss_pred             EEEcccCccCcc----Cc-cCCCCCCCCEEEcccCcCcccCcHHH---HhCCCCccEEEccCccC
Q 042660          204 VLDLGDNGITGE----LP-SFGMLPNLKVLRLGSNQLFGMIPEEL---LESVIPIQELDLSGNGF  260 (261)
Q Consensus       204 ~L~Ls~n~l~~~----~~-~~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~L~~N~l  260 (261)
                      .+.++.|.|...    .. .+..+++|+.|+|+.|.|+-.....+   +..+++|+.+++++|.+
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence            999999998631    12 57889999999999999984443333   34455788888888765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=4.6e-10  Score=99.76  Aligned_cols=127  Identities=28%  Similarity=0.287  Sum_probs=78.3

Q ss_pred             CCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCcc
Q 042660          124 GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLE  203 (261)
Q Consensus       124 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~  203 (261)
                      .|.+.+.++|++. ....++.-++.++.|+|+.|+++..-  .+..++.|++||++.|.+..     +..+... .+.|+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-----vp~l~~~-gc~L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-----VPQLSMV-GCKLQ  235 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-----ccccchh-hhhhe
Confidence            3555666666665 35556666677777777777775542  56667777777777777752     1122111 13467


Q ss_pred             EEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          204 VLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       204 ~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      .|.+.+|.++ ..-.+.++.+|+.||+++|-+.+.-....+..+..|+.|.|.+|++
T Consensus       236 ~L~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  236 LLNLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eeeecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            7777777776 3334456677777777777776543333333344677777777765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=3.1e-08  Score=79.80  Aligned_cols=178  Identities=20%  Similarity=0.198  Sum_probs=98.6

Q ss_pred             EEEcCCCCccc--cCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCC-CCccccCCCCCCEEEcc
Q 042660           79 NLSLSGNNFTG--RIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG-FPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        79 ~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~  155 (261)
                      ++||.+|.|+.  .+...+.++++|+.|++++|.+...+...-....+|++|.|.+..+... ....+..++.++.|.++
T Consensus        75 elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS  154 (418)
T KOG2982|consen   75 ELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMS  154 (418)
T ss_pred             hhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhc
Confidence            67777777764  2444556777788888888877644433223556777777777766532 23344567777777777


Q ss_pred             cCcccccc--chhccCC-CCCCEEecccCcccccCCccccccccC--CCCCccEEEcccCccCccCc--cCCCCCCCCEE
Q 042660          156 KNKLWGDI--GGIMSEL-KNVEFVDLSFNRFHGGLGVGADNVSSI--ANTNLEVLDLGDNGITGELP--SFGMLPNLKVL  228 (261)
Q Consensus       156 ~n~l~~~~--~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~~~l--~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L  228 (261)
                      .|.+....  .+....+ +.++++++..|...     .|.+..++  .++++..+.+..|.+...-.  .....+.+..|
T Consensus       155 ~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-----~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  155 DNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-----LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             cchhhhhccccccccccchhhhhhhcCCcHHH-----HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            77442210  0011111 13334443333221     11111110  03455666666666654322  44556666677


Q ss_pred             EcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          229 RLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       229 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +|+.|+|......+.+...+.|+.|.+++|+++
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            777777765555555566667777777777653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.54  E-value=1.2e-08  Score=88.96  Aligned_cols=99  Identities=35%  Similarity=0.325  Sum_probs=41.4

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .+++.+|.|... ...+..+++|++|++++|.|+.+.+  +..++.|+.|++++|.++.  ...+..+..|+.+++++|.
T Consensus        99 ~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen   99 ALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNR  173 (414)
T ss_pred             eeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh--ccCCccchhhhcccCCcch
Confidence            444444444421 1113344444555555555443322  2333344445555554442  1222334444455555554


Q ss_pred             cccccc-hhccCCCCCCEEecccCcc
Q 042660          159 LWGDIG-GIMSELKNVEFVDLSFNRF  183 (261)
Q Consensus       159 l~~~~~-~~~~~l~~L~~L~l~~n~l  183 (261)
                      +...-+ . ...+.+++.+++.+|.+
T Consensus       174 i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  174 IVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             hhhhhhhh-hhhccchHHHhccCCch
Confidence            433322 1 23344444444444444

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.49  E-value=2.1e-07  Score=53.72  Aligned_cols=42  Identities=45%  Similarity=0.991  Sum_probs=28.2

Q ss_pred             hhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcC
Q 042660           26 ESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCD   72 (261)
Q Consensus        26 ~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~   72 (261)
                      ++|+.||++||+++..+|.+ .+.+|+...  ..  .+|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~-~l~~W~~~~--~~--~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSG-VLSSWNPSS--DS--DPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-C-CCTT--TT----S---CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCc-ccccCCCcC--CC--CCeeeccEEeC
Confidence            57999999999999666755 489999753  12  24599999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.40  E-value=2.4e-08  Score=87.19  Aligned_cols=169  Identities=32%  Similarity=0.361  Sum_probs=108.7

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .+.+..|.+.. +-..+..+.+++.+++.+|.|..+.. .+..+++|++|++++|.|+..  ..+..++.|+.|++++|.
T Consensus        76 ~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   76 ELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNL  151 (414)
T ss_pred             hhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheeccCc
Confidence            45566666663 33446778899999999999985443 267789999999999999863  235667779999999999


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc---------------------
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP---------------------  217 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~---------------------  217 (261)
                      +...  ..+..+..|+.+++++|.+...-+.....+     ..++.+++.+|.+.....                     
T Consensus       152 i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~-----~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  152 ISDI--SGLESLKSLKLLDLSYNRIVDIENDELSEL-----ISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             chhc--cCCccchhhhcccCCcchhhhhhhhhhhhc-----cchHHHhccCCchhcccchHHHHHHHHhhcccccceecc
Confidence            9654  234458899999999999874433101222     345666777766542111                     


Q ss_pred             cCCCCC--CCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          218 SFGMLP--NLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       218 ~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      .+....  +|+.+++.+|.+. .++ ..+..+..+..+++.+|++
T Consensus       225 ~l~~~~~~~L~~l~l~~n~i~-~~~-~~~~~~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  225 GLNELVMLHLRELYLSGNRIS-RSP-EGLENLKNLPVLDLSSNRI  267 (414)
T ss_pred             CcccchhHHHHHHhcccCccc-ccc-ccccccccccccchhhccc
Confidence            001111  2566677777665 332 1123345667777777665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=2.3e-09  Score=95.42  Aligned_cols=125  Identities=29%  Similarity=0.300  Sum_probs=65.0

Q ss_pred             CCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660          101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF  180 (261)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  180 (261)
                      |...+++.|.+. ....++.-++.++.|+|++|+++..  +.+..+++|++||+++|.+.. +|..-..-..|+.|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhheeeeecc
Confidence            444455555555 3344455555666666666666532  255566666666666666632 222211112266666666


Q ss_pred             CcccccCCccccccccCCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCc
Q 042660          181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~  236 (261)
                      |.++     .+..+.++  .+|+.||+++|-+.+.-.  .++.+..|..|+|.+|.+-
T Consensus       242 N~l~-----tL~gie~L--ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALT-----TLRGIENL--KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHH-----hhhhHHhh--hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            6664     23333332  345666666666654322  3445556666666666653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.24  E-value=2.7e-06  Score=65.02  Aligned_cols=57  Identities=26%  Similarity=0.233  Sum_probs=25.5

Q ss_pred             CCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660          101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL  159 (261)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  159 (261)
                      ...+||++|.+...  ..|..++.|++|.+.+|+|+..-|.--.-+++|..|.+.+|.|
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            34455555555421  1234444555555555555543333222334455555555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.23  E-value=4.6e-07  Score=72.32  Aligned_cols=160  Identities=22%  Similarity=0.229  Sum_probs=88.2

Q ss_pred             CeEEEEcCCCCccccC----cccccCCCCCCEEECcCCcCc---CCCC-------ccccCCCCCCEEEccCCcCcCCCCc
Q 042660           76 GSVNLSLSGNNFTGRI----VPALGSISSLQYLDLSNNKFI---GPIP-------GRITDLWGLNYLNLSMNGFKGGFPG  141 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~---~~~~-------~~~~~l~~L~~L~l~~n~l~~~~p~  141 (261)
                      ..++++|++|.|...-    ...+++-.+|+..+++.-...   ..++       .++.+++.|+..+||+|.+....|+
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            4458888888887543    334555567777777653322   1122       2345678888888888888765554


Q ss_pred             c----ccCCCCCCEEEcccCcccccc----ch---------hccCCCCCCEEecccCcccccCCccccccccCCCCCccE
Q 042660          142 N----LRNLQQLKVLDLRKNKLWGDI----GG---------IMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV  204 (261)
Q Consensus       142 ~----~~~l~~L~~L~l~~n~l~~~~----~~---------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~  204 (261)
                      .    ++..+.|++|.+++|.+...-    .+         ....-|.|+++..+.|++-. .+........-...+|+.
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLKE  189 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCcee
Confidence            3    345677888888888763221    11         11234677888887777742 111111110000124566


Q ss_pred             EEcccCccCcc--Cc----cCCCCCCCCEEEcccCcCc
Q 042660          205 LDLGDNGITGE--LP----SFGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       205 L~Ls~n~l~~~--~~----~~~~~~~L~~L~L~~n~l~  236 (261)
                      +.+.+|.|.-.  ..    .+..+.+|+.|+|+.|-|+
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            66666655421  00    1233455666666666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.16  E-value=1.2e-06  Score=82.61  Aligned_cols=105  Identities=30%  Similarity=0.405  Sum_probs=86.0

Q ss_pred             eEEEEcCCCC--ccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           77 SVNLSLSGNN--FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        77 ~~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      ..+|-+..|.  +.......|..++.|++||+++|.--+.+|..++++-+|++|+++++.+. .+|..+.++..|.+|++
T Consensus       547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence            3366677775  44344455788999999999998877889999999999999999999998 68999999999999999


Q ss_pred             ccCccccccchhccCCCCCCEEecccCc
Q 042660          155 RKNKLWGDIGGIMSELKNVEFVDLSFNR  182 (261)
Q Consensus       155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~  182 (261)
                      ..+.....+|.....+++|++|.+....
T Consensus       626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  626 EVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccchhhhcccccEEEeeccc
Confidence            9887666667777778999999886654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=2.6e-06  Score=49.30  Aligned_cols=36  Identities=47%  Similarity=0.657  Sum_probs=27.5

Q ss_pred             CccEEEcccCccCccCccCCCCCCCCEEEcccCcCc
Q 042660          201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       201 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~  236 (261)
                      +|++|++++|+++..++.+..+++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            578888888888865556788888888888888887

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.04  E-value=1.2e-07  Score=68.02  Aligned_cols=104  Identities=25%  Similarity=0.440  Sum_probs=55.0

Q ss_pred             CCEEECcCCcCcCCCCcc---ccCCCCCCEEEccCCcCcCCCCcccc-CCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660          101 LQYLDLSNNKFIGPIPGR---ITDLWGLNYLNLSMNGFKGGFPGNLR-NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV  176 (261)
Q Consensus       101 L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  176 (261)
                      +..++++.+++-. ++..   +.....|+..++++|.+.. .|+.|. ..+.++.+++++|.+ ..+|..+..++.|+.+
T Consensus        29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhc
Confidence            3455666665541 2222   2334445556677776664 444443 334666666766666 3344456666666666


Q ss_pred             ecccCcccccCCccccccccCCCCCccEEEcccCccC
Q 042660          177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGIT  213 (261)
Q Consensus       177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~  213 (261)
                      +++.|.+. ..|..+..+     .++..|+..+|.+.
T Consensus       106 Nl~~N~l~-~~p~vi~~L-----~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPL-----IKLDMLDSPENARA  136 (177)
T ss_pred             ccccCccc-cchHHHHHH-----HhHHHhcCCCCccc
Confidence            66666664 223333332     23355555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.01  E-value=1.8e-05  Score=60.69  Aligned_cols=101  Identities=22%  Similarity=0.174  Sum_probs=54.9

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCC-CccccCCCCCCEEEcccC
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF-PGNLRNLQQLKVLDLRKN  157 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n  157 (261)
                      .+||++|.+..  .+.|..++.|.+|.++.|+|+.+.|.--.-+++|+.|.+.+|++.... -..+..+++|++|.+-+|
T Consensus        46 ~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   46 AIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN  123 (233)
T ss_pred             eecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence            56666666653  223445566666667777666555544445566666666666654211 122345566666666666


Q ss_pred             ccccccc---hhccCCCCCCEEecccC
Q 042660          158 KLWGDIG---GIMSELKNVEFVDLSFN  181 (261)
Q Consensus       158 ~l~~~~~---~~~~~l~~L~~L~l~~n  181 (261)
                      .....--   -.+..+|+|++||+..-
T Consensus       124 pv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  124 PVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             chhcccCceeEEEEecCcceEeehhhh
Confidence            6533211   12345566666665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=8.7e-06  Score=47.06  Aligned_cols=34  Identities=38%  Similarity=0.583  Sum_probs=12.3

Q ss_pred             CCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660          125 LNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL  159 (261)
Q Consensus       125 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  159 (261)
                      |++|++++|.++. +|..++++++|+.|++++|++
T Consensus         3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCC
Confidence            3344444444432 233333444444444444433

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.98  E-value=4.8e-06  Score=78.60  Aligned_cols=107  Identities=21%  Similarity=0.234  Sum_probs=78.5

Q ss_pred             CCCCEEECcCCc--CcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660           99 SSLQYLDLSNNK--FIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV  176 (261)
Q Consensus        99 ~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  176 (261)
                      +.|+.|-+..|.  +.......|..++.|++||+++|.--+.+|..++.+.+|++|++++..+ ..+|..++++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-cccchHHHHHHhhhee
Confidence            368888888876  5545555577888888888888776567888888888888888888888 4778888888888888


Q ss_pred             ecccCcccccCCccccccccCCCCCccEEEcccCc
Q 042660          177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG  211 (261)
Q Consensus       177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~  211 (261)
                      ++..+.....+|.....+     ++|++|.+-...
T Consensus       624 nl~~~~~l~~~~~i~~~L-----~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLEL-----QSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhc-----ccccEEEeeccc
Confidence            888776554444433334     355777776554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.94  E-value=4.1e-06  Score=67.03  Aligned_cols=163  Identities=26%  Similarity=0.251  Sum_probs=96.2

Q ss_pred             cccCCCCCCEEECcCCcCcCCCCcc----ccCCCCCCEEEccCCcCcCCCCccc-------------cCCCCCCEEEccc
Q 042660           94 ALGSISSLQYLDLSNNKFIGPIPGR----ITDLWGLNYLNLSMNGFKGGFPGNL-------------RNLQQLKVLDLRK  156 (261)
Q Consensus        94 ~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~p~~~-------------~~l~~L~~L~l~~  156 (261)
                      ++.++++++..+++.|.+....|..    +..-..|.+|.+++|.+...-...+             ..-|.|+++....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            4557788888888888887655544    3556678888888887753222112             2346788888888


Q ss_pred             Cccccc----cchhccCCCCCCEEecccCcccccCCccccccccC---CCCCccEEEcccCccCccC----c-cCCCCCC
Q 042660          157 NKLWGD----IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI---ANTNLEVLDLGDNGITGEL----P-SFGMLPN  224 (261)
Q Consensus       157 n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l---~~~~L~~L~Ls~n~l~~~~----~-~~~~~~~  224 (261)
                      |++..-    ....+..-..|+.+.+..|.|.   |..+..+...   ..++|+.|||.+|-++...    . .+..++.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            777221    1122233357777778777775   2222222111   1356788888888776421    1 4556667


Q ss_pred             CCEEEcccCcCcccCcHHHHhCC-----CCccEEEccCcc
Q 042660          225 LKVLRLGSNQLFGMIPEELLESV-----IPIQELDLSGNG  259 (261)
Q Consensus       225 L~~L~L~~n~l~~~~~~~~~~~~-----~~L~~L~L~~N~  259 (261)
                      |+.|.+..|.++.....+++...     ++|..|-..+|.
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence            77787777777655444444322     355555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.83  E-value=3.2e-07  Score=65.90  Aligned_cols=102  Identities=26%  Similarity=0.308  Sum_probs=71.2

Q ss_pred             EEEcCCCCccccCccc---ccCCCCCCEEECcCCcCcCCCCccc-cCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           79 NLSLSGNNFTGRIVPA---LGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      .++|+++++. .+++.   +....+|+..++++|.+.. .|+.| ..++.++++++++|.++. +|..+..++.|+.+++
T Consensus        31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNL  107 (177)
T ss_pred             hcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhccc
Confidence            4666666665 23333   3445567777888888874 44444 455678888888888884 7777888888888888


Q ss_pred             ccCccccccchhccCCCCCCEEecccCccc
Q 042660          155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFH  184 (261)
Q Consensus       155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  184 (261)
                      +.|.+. ..|+.+..+.++..|+..+|.+.
T Consensus       108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            888884 34555555788888888877764

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.71  E-value=0.00025  Score=61.00  Aligned_cols=133  Identities=15%  Similarity=0.224  Sum_probs=73.5

Q ss_pred             eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCC-cCcCCCCccccCCCCCCEEEcc
Q 042660           77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMN-GFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ...|++++|.++. +|. +  -.+|+.|.++++.--..+|..+.  .+|++|++++| .+. .+|.      +|+.|++.
T Consensus        54 l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~  120 (426)
T PRK15386         54 SGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIK  120 (426)
T ss_pred             CCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeC
Confidence            3478888887773 341 1  23588888876443335555442  47888888887 444 3443      36666666


Q ss_pred             cCccccccchhccCC-CCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCc
Q 042660          156 KNKLWGDIGGIMSEL-KNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ  234 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~  234 (261)
                      .+....     +..+ ++|+.|.+.+++..  .+   ......-+.+|+.|++++|.....++.+  ..+|+.|.++.+.
T Consensus       121 ~n~~~~-----L~~LPssLk~L~I~~~n~~--~~---~~lp~~LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n~  188 (426)
T PRK15386        121 GSATDS-----IKNVPNGLTSLSINSYNPE--NQ---ARIDNLISPSLKTLSLTGCSNIILPEKL--PESLQSITLHIEQ  188 (426)
T ss_pred             CCCCcc-----cccCcchHhheeccccccc--cc---cccccccCCcccEEEecCCCcccCcccc--cccCcEEEecccc
Confidence            554421     1222 24566666432210  00   0001111357899999988866332233  2578889887763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=1.2e-06  Score=70.84  Aligned_cols=155  Identities=23%  Similarity=0.251  Sum_probs=77.6

Q ss_pred             CCEEECcCCcCcC-CCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc-cccc-cchhccCCCCCCEEe
Q 042660          101 LQYLDLSNNKFIG-PIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK-LWGD-IGGIMSELKNVEFVD  177 (261)
Q Consensus       101 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~  177 (261)
                      +++||++...|+. .....+..+.+|+.|.+.++++...+...+.+-..|+.++++.+. ++.. ..-.+.+++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            5566666555542 122223445566666666666665555555555666666666542 2111 112244566666666


Q ss_pred             cccCcccccCCc-ccccc----ccC-------------------CCCCccEEEcccCc-cCccCc-cCCCCCCCCEEEcc
Q 042660          178 LSFNRFHGGLGV-GADNV----SSI-------------------ANTNLEVLDLGDNG-ITGELP-SFGMLPNLKVLRLG  231 (261)
Q Consensus       178 l~~n~l~~~~p~-~~~~~----~~l-------------------~~~~L~~L~Ls~n~-l~~~~~-~~~~~~~L~~L~L~  231 (261)
                      ++++.+...... .+...    ..+                   ..++|.+|||++|- ++.... .+..++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            666655421100 00000    000                   14567777777643 332222 56667777777777


Q ss_pred             cCcCcccCcHHHH--hCCCCccEEEccC
Q 042660          232 SNQLFGMIPEELL--ESVIPIQELDLSG  257 (261)
Q Consensus       232 ~n~l~~~~~~~~~--~~~~~L~~L~L~~  257 (261)
                      .|..  .+|..+.  ...++|.+||.-+
T Consensus       347 RCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  347 RCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hhcC--CChHHeeeeccCcceEEEEecc
Confidence            7654  2444332  2334677776654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=1.1e-06  Score=71.10  Aligned_cols=105  Identities=23%  Similarity=0.234  Sum_probs=70.9

Q ss_pred             CCeEEEEcCCCCccccCcccccCC--CCCCEEECcCCcCcCC-CCccccC-CCCCCEEEccCCcCcCC-CCccccCCCCC
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSI--SSLQYLDLSNNKFIGP-IPGRITD-LWGLNYLNLSMNGFKGG-FPGNLRNLQQL  149 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~-~~~~~~~-l~~L~~L~l~~n~l~~~-~p~~~~~l~~L  149 (261)
                      ...+.+|+.+-+|.   |..+..+  ..+..+.+....+... +.+.+.- -..||++||++..++.. .-.-++.+.+|
T Consensus       136 ~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kL  212 (419)
T KOG2120|consen  136 SLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKL  212 (419)
T ss_pred             cceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhh
Confidence            34557888887776   3333333  2344455553333221 2222222 23599999999998732 23345678899


Q ss_pred             CEEEcccCccccccchhccCCCCCCEEecccCc
Q 042660          150 KVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR  182 (261)
Q Consensus       150 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  182 (261)
                      +.|.+.++++.+.+...+++..+|+.++++++.
T Consensus       213 k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s  245 (419)
T KOG2120|consen  213 KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS  245 (419)
T ss_pred             hhccccccccCcHHHHHHhccccceeecccccc
Confidence            999999999999999999999999999998863

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.61  E-value=3e-05  Score=61.66  Aligned_cols=84  Identities=27%  Similarity=0.243  Sum_probs=38.4

Q ss_pred             CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCC--cCcCCCCccccCCCCCCEEEcccCccccc-cchhccCCCCCC
Q 042660           98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMN--GFKGGFPGNLRNLQQLKVLDLRKNKLWGD-IGGIMSELKNVE  174 (261)
Q Consensus        98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~  174 (261)
                      +..++.+.+.+..++..  ..|..+++|+.|.++.|  ++.+.++.....+++|+++++++|++... --..+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            33444444444443311  12345556666666666  44443443334446666666666655321 111123344455


Q ss_pred             EEecccCcc
Q 042660          175 FVDLSFNRF  183 (261)
Q Consensus       175 ~L~l~~n~l  183 (261)
                      .|++.+|..
T Consensus       120 ~Ldl~n~~~  128 (260)
T KOG2739|consen  120 SLDLFNCSV  128 (260)
T ss_pred             hhhcccCCc
Confidence            555555444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.58  E-value=4.1e-05  Score=70.62  Aligned_cols=61  Identities=20%  Similarity=0.341  Sum_probs=28.1

Q ss_pred             CCCEEEccCCcC-cCCCCcccc-CCCCCCEEEcccCccc-cccchhccCCCCCCEEecccCccc
Q 042660          124 GLNYLNLSMNGF-KGGFPGNLR-NLQQLKVLDLRKNKLW-GDIGGIMSELKNVEFVDLSFNRFH  184 (261)
Q Consensus       124 ~L~~L~l~~n~l-~~~~p~~~~-~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~  184 (261)
                      +|++|++++... ...-|..++ .+|+|+.|.+.+-.+. +.+...+.++++|..||+++.+++
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence            455555555332 111222222 2455555555554432 223344455556666666555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=1.6e-05  Score=64.58  Aligned_cols=160  Identities=21%  Similarity=0.137  Sum_probs=96.5

Q ss_pred             CCCCCCEEECcCCcCcC--CCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccc-cchhccCCCCC
Q 042660           97 SISSLQYLDLSNNKFIG--PIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGD-IGGIMSELKNV  173 (261)
Q Consensus        97 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L  173 (261)
                      ...+++.+|+.+|.|+.  .+...+.++|.|++|+++.|.+...+...-....+|+++.|.+..+... ....+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            35789999999999973  2333457899999999999998754333223567889999988877543 33445677888


Q ss_pred             CEEecccCcccccC--CccccccccCCCCCccEEEcccCccCcc--Cc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCC
Q 042660          174 EFVDLSFNRFHGGL--GVGADNVSSIANTNLEVLDLGDNGITGE--LP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVI  248 (261)
Q Consensus       174 ~~L~l~~n~l~~~~--p~~~~~~~~l~~~~L~~L~Ls~n~l~~~--~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  248 (261)
                      +.++++.|.+.-..  .......    .+.+++++...|....-  .. .-..++++..+-+..|.+.......-++..+
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~----s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p  224 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDW----STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP  224 (418)
T ss_pred             hhhhhccchhhhhcccccccccc----chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence            88888888553111  1111111    12234444444432210  00 1123556677777778776444444444555


Q ss_pred             CccEEEccCccC
Q 042660          249 PIQELDLSGNGF  260 (261)
Q Consensus       249 ~L~~L~L~~N~l  260 (261)
                      .+..|.|+.|.|
T Consensus       225 ~~~~LnL~~~~i  236 (418)
T KOG2982|consen  225 SLSCLNLGANNI  236 (418)
T ss_pred             cchhhhhccccc
Confidence            666777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.37  E-value=6.5e-05  Score=69.32  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=13.4

Q ss_pred             CCCCCEEEcccCcCcccCcHHHHh
Q 042660          222 LPNLKVLRLGSNQLFGMIPEELLE  245 (261)
Q Consensus       222 ~~~L~~L~L~~n~l~~~~~~~~~~  245 (261)
                      +|+|+.||.+++.+++.+-+.+..
T Consensus       249 LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             CccccEEecCCcchhHHHHHHHHH
Confidence            556666666666655544444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.26  E-value=0.0014  Score=47.18  Aligned_cols=83  Identities=16%  Similarity=0.154  Sum_probs=33.6

Q ss_pred             cccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCC
Q 042660           94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNV  173 (261)
Q Consensus        94 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  173 (261)
                      +|.+..+|+.+.+.. .+..+....|.+..+|+.+.+..+ +.......|..+.+++.+.+.+ .+.......|..++++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344455566666553 344444455555555666665553 4433344455555555555543 3322333344444555


Q ss_pred             CEEecc
Q 042660          174 EFVDLS  179 (261)
Q Consensus       174 ~~L~l~  179 (261)
                      +.+++.
T Consensus        84 ~~i~~~   89 (129)
T PF13306_consen   84 KNIDIP   89 (129)
T ss_dssp             CEEEET
T ss_pred             cccccC
Confidence            554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.23  E-value=0.0022  Score=55.27  Aligned_cols=54  Identities=13%  Similarity=0.155  Sum_probs=24.0

Q ss_pred             CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660           98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN  157 (261)
Q Consensus        98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  157 (261)
                      +..++.|++++|.+. .+|. +  -.+|++|.++++.--..+|+.+.  .+|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            345555565555544 2231 1  12355555554322123343331  34555555555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.21  E-value=0.00024  Score=56.66  Aligned_cols=109  Identities=28%  Similarity=0.304  Sum_probs=68.2

Q ss_pred             CccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccC--cccccCCccccccccCCCCCccEEEcccCccCc--c
Q 042660          140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN--RFHGGLGVGADNVSSIANTNLEVLDLGDNGITG--E  215 (261)
Q Consensus       140 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~--~  215 (261)
                      .........|+.+++.+..++..  ..+..+++|+.|.++.|  .+.+.++......     ++|+++++++|++..  .
T Consensus        36 ~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~-----P~l~~l~ls~Nki~~lst  108 (260)
T KOG2739|consen   36 GGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA-----PNLKVLNLSGNKIKDLST  108 (260)
T ss_pred             ccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhC-----CceeEEeecCCccccccc
Confidence            33334455666666666555332  22456788999999999  4444333322222     577999999999874  2


Q ss_pred             CccCCCCCCCCEEEcccCcCcc--cCcHHHHhCCCCccEEEc
Q 042660          216 LPSFGMLPNLKVLRLGSNQLFG--MIPEELLESVIPIQELDL  255 (261)
Q Consensus       216 ~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L  255 (261)
                      ++.+..+.+|..|++.+|..+.  .....+|.-+++|+.||-
T Consensus       109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            2245667778888998887663  223446666667777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.10  E-value=0.0024  Score=45.89  Aligned_cols=123  Identities=21%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             CccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccc
Q 042660          116 PGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVS  195 (261)
Q Consensus       116 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~  195 (261)
                      ...|.+..+|+.+.+.. .+.......|..+.+|+.+.+..+ +.......|..+++++.+.+.. .+.......+... 
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~-   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC-   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT--
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc-
Confidence            45677888999999875 566556677888889999999875 6666667788888899999965 3321222223323 


Q ss_pred             cCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCc
Q 042660          196 SIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPI  250 (261)
Q Consensus       196 ~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L  250 (261)
                          .+++.+++..+ +..... .+... .++.+.+.. .++ .++...|....+|
T Consensus        81 ----~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 ----TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             ----TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             ----ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence                46688988765 554444 66666 888888876 444 5677777665444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=1.3e-05  Score=64.47  Aligned_cols=105  Identities=22%  Similarity=0.114  Sum_probs=65.4

Q ss_pred             CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccc-hhccCCCCCCEE
Q 042660           98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIG-GIMSELKNVEFV  176 (261)
Q Consensus        98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L  176 (261)
                      +.+++.|++-++.+..+.  ....++.|++|.|+-|.|+..-  .+..+++|++|+|..|.|..... ..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            445667777777776431  2356777888888888877532  35677788888888887744322 346677888888


Q ss_pred             ecccCcccccCCccccccccCCCCCccEEE
Q 042660          177 DLSFNRFHGGLGVGADNVSSIANTNLEVLD  206 (261)
Q Consensus       177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~  206 (261)
                      .|..|.-.|..+.......-...++|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888877766554433322111134556654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.00015  Score=58.50  Aligned_cols=85  Identities=20%  Similarity=0.144  Sum_probs=46.0

Q ss_pred             CCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCC
Q 042660          122 LWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTN  201 (261)
Q Consensus       122 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~  201 (261)
                      +.+.+.|+..++.++.+  ....+|+.|++|.|+-|+|+..-  .+..+.+|++|+|..|.|.+.  ..+.-+..+  ++
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sl--dEL~YLknl--ps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESL--DELEYLKNL--PS   89 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccH--HHHHHHhcC--ch
Confidence            44556666666666532  22346677777777777775442  245566677777776666411  111112222  45


Q ss_pred             ccEEEcccCccCc
Q 042660          202 LEVLDLGDNGITG  214 (261)
Q Consensus       202 L~~L~Ls~n~l~~  214 (261)
                      |+.|+|..|.=.+
T Consensus        90 Lr~LWL~ENPCc~  102 (388)
T KOG2123|consen   90 LRTLWLDENPCCG  102 (388)
T ss_pred             hhhHhhccCCccc
Confidence            5666666655443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.29  E-value=1.7e-05  Score=69.99  Aligned_cols=184  Identities=27%  Similarity=0.288  Sum_probs=117.0

Q ss_pred             eEEEEcCCCCccccC----cccccCCCCCCEEECcCCcCcCCCCc----cccCC-CCCCEEEccCCcCcCC----CCccc
Q 042660           77 SVNLSLSGNNFTGRI----VPALGSISSLQYLDLSNNKFIGPIPG----RITDL-WGLNYLNLSMNGFKGG----FPGNL  143 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~l~~n~l~~~----~p~~~  143 (261)
                      ...+.+.+|.+....    ...+...+.|+.|++++|.+.+.-..    .+... ..+++|++..+.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            346788888887653    33456778899999999998743222    22222 5677788888887753    34555


Q ss_pred             cCCCCCCEEEcccCcccc----ccchhcc----CCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc
Q 042660          144 RNLQQLKVLDLRKNKLWG----DIGGIMS----ELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE  215 (261)
Q Consensus       144 ~~l~~L~~L~l~~n~l~~----~~~~~~~----~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~  215 (261)
                      .....++.++++.|.+..    .++..+.    ...++++|.+.+|.++...-..+...-......+..++++.|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            567788999999998732    1233333    47789999999988863211111111111112256688888888742


Q ss_pred             -----CccCCCC-CCCCEEEcccCcCcccCcHHHHh---CCCCccEEEccCccC
Q 042660          216 -----LPSFGML-PNLKVLRLGSNQLFGMIPEELLE---SVIPIQELDLSGNGF  260 (261)
Q Consensus       216 -----~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~---~~~~L~~L~L~~N~l  260 (261)
                           .|.+... ..++.++++.|.|++.-...+..   ....++.+.+++|++
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence                 2344555 67889999999988655544433   223778888888875

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.61  E-value=0.0052  Score=29.55  Aligned_cols=11  Identities=45%  Similarity=0.724  Sum_probs=4.4

Q ss_pred             CEEEccCCcCc
Q 042660          126 NYLNLSMNGFK  136 (261)
Q Consensus       126 ~~L~l~~n~l~  136 (261)
                      ++|++++|.++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.28  E-value=0.01  Score=28.46  Aligned_cols=12  Identities=50%  Similarity=0.573  Sum_probs=6.3

Q ss_pred             CCEEEcccCccc
Q 042660          149 LKVLDLRKNKLW  160 (261)
Q Consensus       149 L~~L~l~~n~l~  160 (261)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            455555555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.18  E-value=0.051  Score=27.09  Aligned_cols=22  Identities=41%  Similarity=0.653  Sum_probs=15.8

Q ss_pred             CCCCEEEcccCcCcccCcHHHHh
Q 042660          223 PNLKVLRLGSNQLFGMIPEELLE  245 (261)
Q Consensus       223 ~~L~~L~L~~n~l~~~~~~~~~~  245 (261)
                      ++|+.|+|++|.|+ .+|...|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHcc
Confidence            46777888888877 67776654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.18  E-value=0.051  Score=27.09  Aligned_cols=22  Identities=41%  Similarity=0.653  Sum_probs=15.8

Q ss_pred             CCCCEEEcccCcCcccCcHHHHh
Q 042660          223 PNLKVLRLGSNQLFGMIPEELLE  245 (261)
Q Consensus       223 ~~L~~L~L~~n~l~~~~~~~~~~  245 (261)
                      ++|+.|+|++|.|+ .+|...|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHcc
Confidence            46777888888877 67776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.05  E-value=0.061  Score=23.94  Aligned_cols=12  Identities=50%  Similarity=0.772  Sum_probs=4.6

Q ss_pred             ccEEEcccCccC
Q 042660          202 LEVLDLGDNGIT  213 (261)
Q Consensus       202 L~~L~Ls~n~l~  213 (261)
                      |+.|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            455555555544

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.89  E-value=0.001  Score=58.94  Aligned_cols=160  Identities=27%  Similarity=0.280  Sum_probs=105.8

Q ss_pred             CCEEECcCCcCcCCCC----ccccCCCCCCEEEccCCcCcCCCC----ccccCC-CCCCEEEcccCccccc----cchhc
Q 042660          101 LQYLDLSNNKFIGPIP----GRITDLWGLNYLNLSMNGFKGGFP----GNLRNL-QQLKVLDLRKNKLWGD----IGGIM  167 (261)
Q Consensus       101 L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l-~~L~~L~l~~n~l~~~----~~~~~  167 (261)
                      +..+.+.+|.+.....    ..+...+.|+.|+++.|.+.....    ..+... ..+++|++..|.++..    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            7788889998875433    345778899999999999874221    222232 5677788888887654    44556


Q ss_pred             cCCCCCCEEecccCccccc----CCccccccccCCCCCccEEEcccCccCccCc-----cCCCCCC-CCEEEcccCcCcc
Q 042660          168 SELKNVEFVDLSFNRFHGG----LGVGADNVSSIANTNLEVLDLGDNGITGELP-----SFGMLPN-LKVLRLGSNQLFG  237 (261)
Q Consensus       168 ~~l~~L~~L~l~~n~l~~~----~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-----~~~~~~~-L~~L~L~~n~l~~  237 (261)
                      .....++.++++.|.+...    ++..+.. ......++++|.++++.++....     .+...+. +..+++..|.+.+
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~-~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALES-AASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhh-hhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            6678899999999988411    1111111 00123578999999999874221     3444555 7779999999985


Q ss_pred             cCcHHHHhCCC----CccEEEccCccCC
Q 042660          238 MIPEELLESVI----PIQELDLSGNGFT  261 (261)
Q Consensus       238 ~~~~~~~~~~~----~L~~L~L~~N~ls  261 (261)
                      .....+...+.    .+++++++.|.|+
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~  275 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSIT  275 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence            54444433333    5689999999874

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.69  E-value=0.08  Score=46.91  Aligned_cols=37  Identities=35%  Similarity=0.401  Sum_probs=17.3

Q ss_pred             CCCCCEEEcccCc-CcccCcHHHHhCCCCccEEEccCc
Q 042660          222 LPNLKVLRLGSNQ-LFGMIPEELLESVIPIQELDLSGN  258 (261)
Q Consensus       222 ~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~N  258 (261)
                      ++.|+.|.+.++. +++..-..+....+.|++|+++++
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            4455555544444 343333344444444555555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.63  E-value=0.25  Score=24.50  Aligned_cols=13  Identities=38%  Similarity=0.440  Sum_probs=6.1

Q ss_pred             CCCEEEccCCcCc
Q 042660          124 GLNYLNLSMNGFK  136 (261)
Q Consensus       124 ~L~~L~l~~n~l~  136 (261)
                      +|++|++++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.63  E-value=0.25  Score=24.50  Aligned_cols=13  Identities=38%  Similarity=0.440  Sum_probs=6.1

Q ss_pred             CCCEEEccCCcCc
Q 042660          124 GLNYLNLSMNGFK  136 (261)
Q Consensus       124 ~L~~L~l~~n~l~  136 (261)
                      +|++|++++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.97  E-value=0.0048  Score=48.75  Aligned_cols=82  Identities=18%  Similarity=0.194  Sum_probs=52.9

Q ss_pred             eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEccc
Q 042660           77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK  156 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  156 (261)
                      .+.||++.|++.. ...-+.-++.+..|+++.|++. ..|..+..+..+..+++..|..+ ..|.+++..++++++++-+
T Consensus        44 ~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   44 VTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             eeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence            3456777766552 3333444556666777777766 56666666666777777666666 4677777777777777777


Q ss_pred             Ccccc
Q 042660          157 NKLWG  161 (261)
Q Consensus       157 n~l~~  161 (261)
                      |.+..
T Consensus       121 ~~~~~  125 (326)
T KOG0473|consen  121 TEFFR  125 (326)
T ss_pred             CcchH
Confidence            66533

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.84  E-value=0.0054  Score=48.50  Aligned_cols=90  Identities=20%  Similarity=0.196  Sum_probs=73.1

Q ss_pred             cccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCC
Q 042660           92 VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELK  171 (261)
Q Consensus        92 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  171 (261)
                      -..+..+...+.||++.|++. ..-..|.-+..+..|+++.|.+.. .|..++....++.+++.+|.. ...|.++...+
T Consensus        35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~  111 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNH-SQQPKSQKKEP  111 (326)
T ss_pred             hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccch-hhCCccccccC
Confidence            345677788999999999987 334456667778889999999884 788888888888888888877 66788899999


Q ss_pred             CCCEEecccCccc
Q 042660          172 NVEFVDLSFNRFH  184 (261)
Q Consensus       172 ~L~~L~l~~n~l~  184 (261)
                      .++.+++-.|.+.
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            9999999988875

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.16  E-value=0.2  Score=24.30  Aligned_cols=15  Identities=47%  Similarity=0.729  Sum_probs=7.2

Q ss_pred             CCCCEEEcccCcCcc
Q 042660          223 PNLKVLRLGSNQLFG  237 (261)
Q Consensus       223 ~~L~~L~L~~n~l~~  237 (261)
                      ++|+.|++++|.|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345566666665554

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.15  E-value=1.6  Score=21.80  Aligned_cols=12  Identities=50%  Similarity=0.689  Sum_probs=6.0

Q ss_pred             CccEEEccCccC
Q 042660          249 PIQELDLSGNGF  260 (261)
Q Consensus       249 ~L~~L~L~~N~l  260 (261)
                      +|+.|++++|+|
T Consensus         3 ~L~~L~L~~NkI   14 (26)
T smart00365        3 NLEELDLSQNKI   14 (26)
T ss_pred             ccCEEECCCCcc
Confidence            345555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-15
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-09
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		8e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 87  FTGRIVPALGS--ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR 144
           F+G I+P L     ++LQ L L NN F G IP  +++   L  L+LS N   G  P +L 
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV 204
           +L +L+ L L  N L G+I   +  +K +E + L FN   G +  G  N      TNL  
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-----TNLNW 494
Query: 205 LDLGDNGITGELPSF-GMLPNLKVLRLGSNQLFGMIPEEL 243
           + L +N +TGE+P + G L NL +L+L +N   G IP EL
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 87  FTGRIVPALGS--ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR 144
           F+G I+P L     ++LQ L L NN F G IP  +++   L  L+LS N   G  P +L 
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV 204
           +L +L+ L L  N L G+I   +  +K +E + L FN   G +  G  N      TNL  
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-----TNLNW 491
Query: 205 LDLGDNGITGELPSF-GMLPNLKVLRLGSNQLFGMIPEEL 243
           + L +N +TGE+P + G L NL +L+L +N   G IP EL
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 16/196 (8%)
Query: 49  STWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXXXXFTG--RIVPALGSISSLQYLDL 106
           S+W    LP T  C  +W GV CD +                 +  P   S+++L YL+ 
Sbjct: 25  SSW----LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80
Query: 107 SN----NKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGD 162
                 N  +GPIP  I  L  L+YL ++     G  P  L  ++ L  LD   N L G 
Sbjct: 81  LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140
Query: 163 IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL-PSFGM 221
           +   +S L N+  +    NR  G +     + S +       + +  N +TG++ P+F  
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL----FTSMTISRNRLTGKIPPTFAN 196
Query: 222 LPNLKVLRLGSNQLFG 237
           L NL  + L  N L G
Sbjct: 197 L-NLAFVDLSRNMLEG 211

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 94  ALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
            L S+++L  LDL+NN+   + P+ G    L  L  L L  N      P  L  L  L  
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQISNISP--LAGLTALTN 290
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
           L+L +N+L  DI  I S LKN+ ++ L FN            VSS+  T L+ L   +N 
Sbjct: 291 LELNENQL-EDISPI-SNLKNLTYLTLYFNNIS-----DISPVSSL--TKLQRLFFANNK 341
Query: 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           +  ++ S   L N+  L  G NQ+  + P   L ++  I +L L+   +T
Sbjct: 342 V-SDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWT 387

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 94  ALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
            L S+++L  LDL+NN+   + P+ G    L  L  L L  N      P  L  L  L  
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQISNISP--LAGLTALTN 286
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
           L+L +N+L  DI  I S LKN+ ++ L FN            VSS+  T L+ L   +N 
Sbjct: 287 LELNENQL-EDISPI-SNLKNLTYLTLYFNNIS-----DISPVSSL--TKLQRLFFSNNK 337
Query: 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           +  ++ S   L N+  L  G NQ+  + P   L ++  I +L L+   +T
Sbjct: 338 V-SDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWT 383

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 94  ALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
            L S+++L  LDL+NN+   + P+ G    L  L  L L  N      P  L  L  L  
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
           L+L +N+L  DI  I S LKN+ ++ L FN            VSS+  T L+ L   +N 
Sbjct: 288 LELNENQL-EDISPI-SNLKNLTYLTLYFNNIS-----DISPVSSL--TKLQRLFFSNNK 338
Query: 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           +  ++ S   L N+  L  G NQ+  + P   L ++  I +L L+   +T
Sbjct: 339 V-SDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWT 384

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (388), Expect = 4e-45
 Identities = 66/271 (24%), Positives = 107/271 (39%), Gaps = 47/271 (17%)

Query: 23  LGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGS---VN 79
           L +  +  +L++ KK + +       S+W     P T  C  +W GV CD ++ +    N
Sbjct: 2   LCNPQDKQALLQIKKDLGNPT---TLSSWL----PTTDCCNRTWLGVLCDTDTQTYRVNN 54

Query: 80  LSLSG---------------------------NNFTGRIVPALGSISSLQYLDLSNNKFI 112
           L LSG                           NN  G I PA+  ++ L YL +++    
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 113 GPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDI-GGIMSELK 171
           G IP  ++ +  L  L+ S N   G  P ++ +L  L  +    N++ G I     S  K
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 172 NVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRL 230
               + +S NR  G +        + AN NL  +DL  N + G+    FG   N + + L
Sbjct: 175 LFTSMTISRNRLTGKIP------PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 231 GSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
             N L   + +  +     +  LDL  N   
Sbjct: 229 AKNSLAFDLGK--VGLSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  123 bits (312), Expect = 5e-34
 Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 11/166 (6%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGL-NYLNLSMNGFKGG 138
           L  S N  +G + P++ S+ +L  +    N+  G IP        L   + +S N   G 
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
            P    NL  L  +DL +N L GD   +    KN + + L+ N     L         + 
Sbjct: 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-------GKVG 241

Query: 199 N-TNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEE 242
              NL  LDL +N I G LP     L  L  L +  N L G IP+ 
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  111 bits (279), Expect = 4e-29
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 10/156 (6%)

Query: 80  LSLSGNNFTGRIVPALGSISSL-QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           ++  GN  +G I  + GS S L   + +S N+  G IP    +L  L +++LS N  +G 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
                 + +  + + L KN L  D+G +    KN+  +DL  NR +G L         + 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRNNRIYGTLP------QGLT 265

Query: 199 N-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSN 233
               L  L++  N + GE+P  G L    V    +N
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.0 bits (180), Expect = 3e-15
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            + L+ N+    +   +G   +L  LDL NN+  G +P  +T L  L+ LN+S N   G 
Sbjct: 225 KIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 139 FP--GNLRNLQQL 149
            P  GNL+     
Sbjct: 284 IPQGGNLQRFDVS 296

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  146 bits (372), Expect = 2e-40
 Identities = 61/275 (22%), Positives = 98/275 (35%), Gaps = 60/275 (21%)

Query: 24  GSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSV----- 78
               E+  LI FK  + D  L      W+    P    C  ++ GV+C      V     
Sbjct: 9   SLYREIHQLISFKDVLPDKNLL---PDWSSNKNP----C--TFDGVTCR--DDKVTSIDL 57

Query: 79  -----------------------NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPI 115
                                  +L LS ++  G +       +SL  LDLS N   GP+
Sbjct: 58  SSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPV 116

Query: 116 PGR--ITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLKVLDLRKNKLWGDI---GGIMSE 169
                +    GL +LN+S N             L  L+VLDL  N + G       +   
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176

Query: 170 LKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLEVLDLGDNGITGELPSFGMLPNLKVL 228
              ++ + +S N+  G +         ++   NLE LD+  N  +  +P  G    L+ L
Sbjct: 177 CGELKHLAISGNKISGDV--------DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL 228

Query: 229 RLGSNQLFGMIPEEL--LESVIPIQELDLSGNGFT 261
            +  N+L G     +        ++ L++S N F 
Sbjct: 229 DISGNKLSGDFSRAISTCTE---LKLLNISSNQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  146 bits (371), Expect = 3e-40
 Identities = 71/188 (37%), Positives = 100/188 (53%), Gaps = 15/188 (7%)

Query: 80  LSLSGNNFTGRIVPALGSI--SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           L LS NNF+G I+P L     ++LQ L L NN F G IP  +++   L  L+LS N   G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
             P +L +L +L+ L L  N L G+I   +  +K +E + L FN   G +       S +
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP------SGL 486

Query: 198 AN-TNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEEL--LESVIPIQEL 253
           +N TNL  + L +N +TGE+P   G L NL +L+L +N   G IP EL    S   +  L
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS---LIWL 543

Query: 254 DLSGNGFT 261
           DL+ N F 
Sbjct: 544 DLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  143 bits (363), Expect = 4e-39
 Identities = 66/186 (35%), Positives = 91/186 (48%), Gaps = 13/186 (6%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L +S NNF+  I P LG  S+LQ+LD+S NK  G     I+    L  LN+S N F G  
Sbjct: 205 LDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDI-GGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
           P     L+ L+ L L +NK  G+I   +      +  +DLS N F+G +           
Sbjct: 264 PPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP------PFFG 315

Query: 199 N-TNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255
           + + LE L L  N  +GELP  +   +  LKVL L  N+  G +PE L      +  LDL
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 256 SGNGFT 261
           S N F+
Sbjct: 376 SSNNFS 381

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  138 bits (349), Expect = 3e-37
 Identities = 58/181 (32%), Positives = 82/181 (45%), Gaps = 8/181 (4%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L  N FTG+I P L + S L  L LS N   G IP  +  L  L  L L +N  +G  
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
           P  L  ++ L+ L L  N L G+I   +S   N+ ++ LS NR  G +         I  
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP------KWIGR 512

Query: 200 -TNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
             NL +L L +N  +G +P   G   +L  L L +N   G IP  + +    I    ++G
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572

Query: 258 N 258
            
Sbjct: 573 K 573

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (336), Expect = 1e-35
 Identities = 66/190 (34%), Positives = 93/190 (48%), Gaps = 13/190 (6%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNGFK 136
             L LSGN+F G + P  GS S L+ L LS+N F G +P   +  + GL  L+LS N F 
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 137 GGFPGNLRNL-QQLKVLDLRKNKLWGDI--GGIMSELKNVEFVDLSFNRFHGGLGVGADN 193
           G  P +L NL   L  LDL  N   G I      +    ++ + L  N F G +      
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP----- 411

Query: 194 VSSIAN-TNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQ 251
             +++N + L  L L  N ++G +P S G L  L+ L+L  N L G IP+EL+     ++
Sbjct: 412 -PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLE 469

Query: 252 ELDLSGNGFT 261
            L L  N  T
Sbjct: 470 TLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (331), Expect = 7e-35
 Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 12/189 (6%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
            +L +SGN  +G    A+ + + L+ L++S+N+F+GPIP     L  L YL+L+ N F G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTG 283

Query: 138 GFPGNLR-NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
             P  L      L  LDL  N  +G +         +E + LS N F G L      + +
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL-----PMDT 338

Query: 197 IAN-TNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIP-IQE 252
           +     L+VLDL  N  +GELP     +  +L  L L SN   G I   L ++    +QE
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 253 LDLSGNGFT 261
           L L  NGFT
Sbjct: 399 LYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (304), Expect = 3e-31
 Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 19/200 (9%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L  N   G I   L  + +L+ L L  N   G IP  +++   LN+++LS N   G  
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGL------------ 187
           P  +  L+ L +L L  N   G+I   + + +++ ++DL+ N F+G +            
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566

Query: 188 -----GVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPE 241
                G     + +                 G        L       + S    G    
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 242 ELLESVIPIQELDLSGNGFT 261
              ++   +  LD+S N  +
Sbjct: 627 T-FDNNGSMMFLDMSYNMLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (285), Expect = 1e-28
 Identities = 49/203 (24%), Positives = 74/203 (36%), Gaps = 23/203 (11%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L L  N+ TG I   L + ++L ++ LSNN+  G IP  I  L  L  L LS N F G 
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDI-----------------GGIMSELKNVEFVDLSFN 181
            P  L + + L  LDL  N   G I                 G     +KN         
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589

Query: 182 RFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIP 240
             +     G  +      +     ++      G    +F    ++  L +  N L G IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

Query: 241 EEL--LESVIPIQELDLSGNGFT 261
           +E+  +     +  L+L  N  +
Sbjct: 650 KEIGSMPY---LFILNLGHNDIS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (273), Expect = 4e-27
 Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 31/206 (15%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGP--------------------IPGRI 119
           L LS N+F+G I   LG   SL +LDL+ N F G                         I
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578

Query: 120 TDLWGLNYLNLSMNG--FKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVD 177
            +       + + N   F+G     L  L      ++      G          ++ F+D
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 178 LSFNRFHGGLGVGADNVSSIAN-TNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQL 235
           +S+N   G +         I +   L +L+LG N I+G +P   G L  L +L L SN+L
Sbjct: 639 MSYNMLSGYIP------KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692

Query: 236 FGMIPEELLESVIPIQELDLSGNGFT 261
            G IP+  + ++  + E+DLS N  +
Sbjct: 693 DGRIPQA-MSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (257), Expect = 5e-25
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 10/173 (5%)

Query: 73  PESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNN--KFIGPIPGRITDLWGLNYLNL 130
                 +  ++ N   G+    + +    +    + N  +F G    ++  L   N  N+
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615

Query: 131 SMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVG 190
           +   + G       N   +  LD+  N L G I   +  +  +  ++L  N   G +   
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI--- 672

Query: 191 ADNVSSIAN-TNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPE 241
                 + +   L +LDL  N + G +P +   L  L  + L +N L G IPE
Sbjct: 673 ---PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 5e-23
 Identities = 31/155 (20%), Positives = 67/155 (43%), Gaps = 7/155 (4%)

Query: 72  DPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLS 131
           D      + + +   F G     L  +S+    ++++  + G       +   + +L++S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGA 191
            N   G  P  + ++  L +L+L  N + G I   + +L+ +  +DLS N+  G +    
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP--- 697

Query: 192 DNVSSIAN-TNLEVLDLGDNGITGELPSFGMLPNL 225
               +++  T L  +DL +N ++G +P  G     
Sbjct: 698 ---QAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.9 bits (203), Expect = 7e-18
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           + L +S N  +G I   +GS+  L  L+L +N   G IP  + DL GLN L+LS N   G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDI--GGIMSELKNVEFV 176
             P  +  L  L  +DL  N L G I   G        +F+
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (286), Expect = 8e-29
 Identities = 46/207 (22%), Positives = 69/207 (33%), Gaps = 24/207 (11%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L+L+ N             S L  LD+  N      P     L  L  LNL  N     
Sbjct: 29  VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG-------GL---- 187
                     L  L L  N +         + KN+  +DLS N            L    
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148

Query: 188 ----------GVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLF 236
                      + ++ +   AN++L+ L+L  N I    P  F  +  L  L L + QL 
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 237 GMIPEELLESVIP--IQELDLSGNGFT 261
             + E+L   +    I+ L LS +  +
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLS 235

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  111 bits (279), Expect = 6e-28
 Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 18/194 (9%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNGFKG 137
           + LS N +      +   + SLQ L L       +   P     L  L  L+LS N    
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 138 GFPGNLRNLQQLKVLDLRKNKL--------WGDIGGIMSELKNVEFVDLSFNRFHGGLGV 189
                L  L++L++LDL+ N L         G     +  L ++  ++L  N F      
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE---- 550

Query: 190 GADNVSSIAN-TNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESV 247
               V    +   L+++DLG N +     S F    +LK L L  N +  +  +    + 
Sbjct: 551 --IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 248 IPIQELDLSGNGFT 261
             + ELD+  N F 
Sbjct: 609 RNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (268), Expect = 1e-26
 Identities = 44/196 (22%), Positives = 71/196 (36%), Gaps = 18/196 (9%)

Query: 80  LSLSGNNFTGRIVPALG----SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGF 135
           LSLS +  + R +        + S L  L+L+ NK         + L  L  L+L +N  
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417

Query: 136 KGGFPGN-LRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNV 194
                G   R L+ +  + L  NK         + + +++ + L              + 
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN----VDSSP 473

Query: 195 SSIAN-TNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQL-------FGMIPEELLE 245
           S      NL +LDL +N I          L  L++L L  N L           P   L+
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 246 SVIPIQELDLSGNGFT 261
            +  +  L+L  NGF 
Sbjct: 534 GLSHLHILNLESNGFD 549

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (258), Expect = 3e-25
 Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 10/184 (5%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
              S    T   VP     +++  L+L++N+         T    L  L++  N      
Sbjct: 9   ADCSHLKLTQ--VPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
           P   + L  LKVL+L+ N+L        +   N+  + L  N       +  +       
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ---KIKNNPFVK--Q 120

Query: 200 TNLEVLDLGDNGITG-ELPSFGMLPNLKVLRLGSNQLFGMIPEEL-LESVIPIQELDLSG 257
            NL  LDL  NG++  +L +   L NL+ L L +N++  +  EEL + +   +++L+LS 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 258 NGFT 261
           N   
Sbjct: 181 NQIK 184

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.7 bits (249), Expect = 5e-24
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 21/194 (10%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWG---LNYLNLSMNGFK 136
           L LS N           +I  L  L L+N +    +  ++        +  L+LS +   
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 137 GGFPGNLRNLQ--QLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNV 194
                    L+   L +LDL  N L        + L  +E+  L +N       + + ++
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ---HLFSHSL 292

Query: 195 SSIANTNLEVLDLGDNGITGELP----------SFGMLPNLKVLRLGSNQLFGMIPEELL 244
             +   N+  L+L  +     +           SF  L  L+ L +  N + G I   + 
Sbjct: 293 HGL--FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMF 349

Query: 245 ESVIPIQELDLSGN 258
             +I ++ L LS +
Sbjct: 350 TGLINLKYLSLSNS 363

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.5 bits (246), Expect = 1e-23
 Identities = 42/202 (20%), Positives = 70/202 (34%), Gaps = 28/202 (13%)

Query: 79  NLSLSGNNFTGRIVPALGS--ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK 136
           NLSLS +  +            ++L  LDLS N            L  L Y  L  N  +
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIG---------GIMSELKNVEFVDLSFNRFHGGL 187
             F  +L  L  ++ L+L+++     I               LK +E +++  N   G  
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-- 343

Query: 188 GVGADNVSSIAN-TNLEVLDLGDN-----GITGELPSFGMLPNLKVLRLGSNQLFGMIPE 241
                  +      NL+ L L ++      +T E         L +L L  N++  +  +
Sbjct: 344 ----IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 242 EL--LESVIPIQELDLSGNGFT 261
               L     ++ LDL  N   
Sbjct: 400 AFSWLGH---LEVLDLGLNEIG 418

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.9 bits (234), Expect = 5e-22
 Identities = 45/198 (22%), Positives = 70/198 (35%), Gaps = 21/198 (10%)

Query: 80  LSLSGNNFTGRIVPALGSI--SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           L LS N         L     SSL+ L+LS+N+     PG    +  L  L L+      
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 138 GFPGNLR---NLQQLKVLDLRKNKLWGDIGGIMSELK--NVEFVDLSFNRFHGGLGVGAD 192
                L        ++ L L  ++L          LK  N+  +DLS+N  +    VG D
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN---VVGND 266

Query: 193 NVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIP-- 249
           + + +    LE   L  N I      S   L N++ L L  +     I    L  +    
Sbjct: 267 SFAWL--PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 250 ------IQELDLSGNGFT 261
                 ++ L++  N   
Sbjct: 325 FQWLKCLEHLNMEDNDIP 342

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 39/164 (23%), Positives = 58/164 (35%), Gaps = 12/164 (7%)

Query: 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159
           S +  D S+ K    +P  +     +  LNL+ N  +     N     QL  LD+  N +
Sbjct: 5   SHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 160 WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLEVLDLGDNGITGELP- 217
                 +  +L  ++ ++L  N           +  + A  TNL  L L  N I      
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQL------SDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 218 SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            F    NL  L L  N L           +  +QEL LS N   
Sbjct: 116 PFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 14/164 (8%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNK--------FIGPIPGRITDLWGLNYLNLS 131
           L LS NN        L  +  L+ LDL +N           G     +  L  L+ LNL 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGA 191
            NGF        ++L +LK++DL  N L      + +   +++ ++L  N          
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV----E 600

Query: 192 DNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL 235
             V   A  NL  LD+  N       S  +   +  +      +
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCES--IAWFVNWINETHTNI 642

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.5 bits (194), Expect = 8e-17
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 9/149 (6%)

Query: 80  LSLSGNNFT--------GRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLS 131
           L L  NN          G  +  L  +S L  L+L +N F         DL+ L  ++L 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSE-LKNVEFVDLSFNRFHGGLGVG 190
           +N           N   LK L+L+KN +      +     +N+  +D+ FN F       
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 628

Query: 191 ADNVSSIANTNLEVLDLGDNGITGELPSF 219
           A  V+ I  T+  + +L  + +    P +
Sbjct: 629 AWFVNWINETHTNIPELSSHYLCNTPPHY 657

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
             + EV D     +T ++P   +  N+ VL L  NQL   +P         +  LD+  N
Sbjct: 3   TVSHEVADCSHLKLT-QVPD-DLPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59

Query: 259 GFT 261
             +
Sbjct: 60  TIS 62

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (282), Expect = 2e-28
 Identities = 45/189 (23%), Positives = 68/189 (35%), Gaps = 13/189 (6%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           NL LS N        +  S   LQ LDLS  +      G    L  L+ L L+ N  +  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
             G    L  L+ L   +  L       +  LK ++ ++++ N                +
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----KLPEYFS 146

Query: 199 N-TNLEVLDLGDNGITGELP-SFGMLPNLKV----LRLGSNQLFGMIPEELLESVIPIQE 252
           N TNLE LDL  N I         +L  + +    L L  N +  + P       I + +
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHK 204

Query: 253 LDLSGNGFT 261
           L L  N  +
Sbjct: 205 LTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (262), Expect = 9e-26
 Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 2/183 (1%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L LS          A  S+S L  L L+ N       G  + L  L  L           
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 140 PGNLRNLQQLKVLDLRKNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
              + +L+ LK L++  N +    +    S L N+E +DLS N+           +  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
             NL  LDL  N +    P       L  L L +N     + +  ++ +  ++   L   
Sbjct: 177 LLNLS-LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 259 GFT 261
            F 
Sbjct: 236 EFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (258), Expect = 3e-25
 Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 32/185 (17%)

Query: 80  LSLSGNNFTGRI-VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           L    +N           S+ +L YLD+S+        G    L  L  L ++ N F+  
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 139 F-PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
           F P     L+ L  LDL + +L        + L                           
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL--------------------------- 493

Query: 198 ANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256
             ++L+VL++  N         +  L +L+VL    N +     +EL      +  L+L+
Sbjct: 494 --SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

Query: 257 GNGFT 261
            N F 
Sbjct: 552 QNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (252), Expect = 2e-24
 Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 15/191 (7%)

Query: 75  SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG 134
            G  +L L    F     P L  + SL+ L  ++NK          DL  L +L+LS NG
Sbjct: 304 FGWQHLELVNCKFGQ--FPTL-KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNG 358

Query: 135 --FKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGAD 192
             FKG    +      LK LDL  N +       +  L+ +E +D   +           
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLK-----QMS 412

Query: 193 NVSSIAN-TNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPI 250
             S   +  NL  LD+            F  L +L+VL++  N        ++   +  +
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 251 QELDLSGNGFT 261
             LDLS     
Sbjct: 473 TFLDLSQCQLE 483

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.9 bits (247), Expect = 8e-24
 Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 12/169 (7%)

Query: 99  SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158
            S + LDLS N               L  L+LS    +    G  ++L  L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLEVLDLGDNGITG--E 215
           +     G  S L +++ +                    I +   L+ L++  N I     
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKL 141

Query: 216 LPSFGMLPNLKVLRLGSNQLFGMIPEELL---ESVIPIQELDLSGNGFT 261
              F  L NL+ L L SN++  +   +L    +  +    LDLS N   
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.3 bits (240), Expect = 8e-23
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 11/184 (5%)

Query: 79  NLSLSGNN-FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
              L+  + +   I+     ++++    L +           +  +G  +L L    F  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ 318

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
                L++L++L     +    + ++      L ++EF+DLS N        G  + S  
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVD-----LPSLEFLDLSRNGLSF---KGCCSQSDF 370

Query: 198 ANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
             T+L+ LDL  NG+     +F  L  L+ L    + L  M    +  S+  +  LD+S 
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 258 NGFT 261
               
Sbjct: 431 THTR 434

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 34/181 (18%)

Query: 80  LSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           L ++GN+F    +P     + +L +LDLS  +     P     L  L  LN+S N F   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
                + L  L+VLD   N +       +                               
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF---------------------------- 541

Query: 199 NTNLEVLDLGDNGITGELPS---FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255
            ++L  L+L  N              + + + L +   ++    P +     +P+  L++
Sbjct: 542 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG--MPVLSLNI 599

Query: 256 S 256
           +
Sbjct: 600 T 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 46/194 (23%), Positives = 63/194 (32%), Gaps = 23/194 (11%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNGFK 136
           ++L LS N     I P       L  L L NN     +    I  L GL    L +  F+
Sbjct: 180 LSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 137 GGF------PGNLRNLQQLKVLDLRKNKL---WGDIGGIMSELKNVEFVDLSFNRFHGGL 187
                       L  L  L + + R   L     DI  + + L NV    L         
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-- 296

Query: 188 GVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESV 247
                      N   + L+L +            L +LK L   SN+      E  L S 
Sbjct: 297 -----VKDFSYNFGWQHLELVNCKFGQ--FPTLKLKSLKRLTFTSNKGGNAFSEVDLPS- 348

Query: 248 IPIQELDLSGNGFT 261
             ++ LDLS NG +
Sbjct: 349 --LEFLDLSRNGLS 360

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 8e-17
 Identities = 32/207 (15%), Positives = 63/207 (30%), Gaps = 27/207 (13%)

Query: 80  LSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIG------PIPGRITDLWGLNYLNLS- 131
           L+L  N  +  ++   +  ++ L+   L   +F             +  L  L       
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 132 --MNGFKGGFPGNLRNLQQLKVLDLRKNKLWG-DIGGIMSELKNVEFVDLSFNRFHGG-- 186
             ++ +          L  +    L    +            +++E V+  F +F     
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 187 --------LGVGADNVSSIAN-TNLEVLDLGDNGITGE---LPSFGMLPNLKVLRLGSNQ 234
                         N  S  +  +LE LDL  NG++ +     S     +LK L L  N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 235 LFGMIPEELLESVIPIQELDLSGNGFT 261
           +  M        +  ++ LD   +   
Sbjct: 385 VITMSSN--FLGLEQLEHLDFQHSNLK 409

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  110 bits (276), Expect = 1e-27
 Identities = 29/202 (14%), Positives = 64/202 (31%), Gaps = 22/202 (10%)

Query: 73  PESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSM 132
                 + +            +  ++  L  ++L N   +  +P  + DL  L  LN++ 
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524

Query: 133 NGFKG---------GFPGNLRNLQQLKVLDLRKNKLWG-DIGGIMSELKNVEFVDLSFNR 182
           N                 +     ++++  +  N L        + ++  +  +D   N+
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

Query: 183 FHGGLGVGADNVSSIAN-TNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMI 239
                     ++ +      L  L L  N I  E+P         ++ L    N+L  + 
Sbjct: 585 VR--------HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP 635

Query: 240 PEELLESVIPIQELDLSGNGFT 261
                +SV  +  +D S N   
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIG 657

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.3 bits (237), Expect = 2e-22
 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 39/194 (20%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKF-------IGPIPGRITDLWGLNYLNL 130
             ++LS N           + S +  + LSNN         + P  G   + + L  ++L
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 131 SMNGFKGGFPGNLR--NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG 188
             N        + R   L  L  +D+  N               ++   +          
Sbjct: 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQ------- 786

Query: 189 VGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESV 247
                            D   N I  + P      P+L  L++GSN +   + E+L    
Sbjct: 787 ----------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQ- 828

Query: 248 IPIQELDLSGNGFT 261
             +  LD++ N   
Sbjct: 829 --LYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.6 bits (230), Expect = 1e-21
 Identities = 38/269 (14%), Positives = 87/269 (32%), Gaps = 37/269 (13%)

Query: 24  GSESELGSLIEFKKGIQDDPL----GRIHSTWNITSLPDTKSC--PVSWTGVSCDPESGS 77
               +  +L    + +         G I++T +  +    K         GV  D     
Sbjct: 266 EYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRV 325

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
             LSL+G    GR+  A+G ++ L+ L    +           +    +      +  + 
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 138 GFPGN-LRNLQQLKVLDLRKNKLWG--DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNV 194
            +    L   Q+L + DL ++ +    ++  I  +   +   D         +   +  +
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI-KKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 195 SSIANTNLEVLDLGDNGITGELP--------------------SFGMLPNLKVLRLGSNQ 234
             +  T L+++   ++  T +                      S+  L +L  + L +  
Sbjct: 445 QRL--TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 235 LFGMIPEEL--LESVIPIQELDLSGNGFT 261
               +P+ L  L     +Q L+++ N   
Sbjct: 503 NMTQLPDFLYDLPE---LQSLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.1 bits (226), Expect = 5e-21
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 14/191 (7%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIG-PIPGRITDLWGLNYLNLSMNGFKG 137
           +L L  N               ++ L  S+NK    P       ++ +  ++ S N    
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 138 -----GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRF-HGGLGVGA 191
                    +         + L  N++      + +    +  + LS N           
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 192 DNVSSIAN-TNLEVLDLGDNGITGELPS---FGMLPNLKVLRLGSNQLFGMIPEELLESV 247
               +  N   L  +DL  N +T  L        LP L  + +  N      P + L S 
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSS 776

Query: 248 IPIQELDLSGN 258
             ++   +   
Sbjct: 777 -QLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 8e-07
 Identities = 11/103 (10%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 77  SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK 136
                  GN    +    + +  SL  L + +N     +  ++     L  L+++ N   
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNI 840

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS 179
                ++    +  +  L  +K          +++  + + + 
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYDKT--------QDIRGCDALGIE 875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  105 bits (263), Expect = 7e-26
 Identities = 34/243 (13%), Positives = 68/243 (27%), Gaps = 42/243 (17%)

Query: 48  HSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLS 107
            + WN     D      +  GVS +       LSL G   +GR+  A+G ++ L+ L L 
Sbjct: 57  GANWNFNKELDMWG---AQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALG 113

Query: 108 NNKFIGP----IPGRITDLWGLNYLNLSMNGFKGGFPGNL--RNLQQLKVLDLRKNKLWG 161
           ++          P  I+              ++  F       +   L    +  +    
Sbjct: 114 SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173

Query: 162 DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLEVLDLGDNGITGELP--- 217
            I            +    N              ++   T L    +G++    E     
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITFVS-------KAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 218 -----------------SFGMLPNLKVLRLGSNQLFGMIPEEL--LESVIPIQELDLSGN 258
                             +  L +L  + + +      +P  L  L     +Q ++++ N
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE---MQLINVACN 283

Query: 259 GFT 261
              
Sbjct: 284 RGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (254), Expect = 1e-24
 Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 34/205 (16%)

Query: 80  LSLSGNNFTG-------RIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSM 132
           +  S N            + P      ++  ++LSNN+         +    L+ +NL  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 133 NGFKG-------GFPGNLRNLQQLKVLDLRKNKLWGDIGGI-MSELKNVEFVDLSFNRFH 184
           N               N +N   L  +DLR NKL         + L  +  +DLS+N F 
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526

Query: 185 GGLGVGADNVSSIAN-TNLEVLDLGD------NGITGELP-SFGMLPNLKVLRLGSNQLF 236
                     +   N + L+   + +      N    E P    + P+L  L++GSN + 
Sbjct: 527 K-------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 237 GMIPEELLESVIPIQELDLSGNGFT 261
             + E++  +   I  LD+  N   
Sbjct: 580 K-VNEKITPN---ISVLDIKDNPNI 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (253), Expect = 2e-24
 Identities = 28/200 (14%), Positives = 70/200 (35%), Gaps = 18/200 (9%)

Query: 73  PESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSM 132
                 N +               ++  L  +++ N   +  +P  +  L  +  +N++ 
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 133 NGFKGG--------FPGNLRNLQQLKVLDLRKNKLW-GDIGGIMSELKNVEFVDLSFNRF 183
           N    G           +    ++++++ +  N L    +   + ++K +  ++  +N+ 
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 184 HGGLGVGADNVSSIAN-TNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPE 241
            G        + +  +   L  L+L  N IT    +  G    ++ L    N+L  +   
Sbjct: 343 EG-------KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395

Query: 242 ELLESVIPIQELDLSGNGFT 261
              +SV  +  +D S N   
Sbjct: 396 FDAKSVSVMSAIDFSYNEIG 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 5e-22
 Identities = 36/206 (17%), Positives = 61/206 (29%), Gaps = 30/206 (14%)

Query: 79  NLSLSGNNFTG-RIVPALGSISSLQYLDLSNNKF-------IGPIPGRITDLWGLNYLNL 130
           NLS + N       +    S+S +  +D S N+          P+         ++ +NL
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 131 SMNGFKGGFPGNLRNLQQLKVLDLRKNKL-------WGDIGGIMSELKNVEFVDLSFNRF 183
           S N               L  ++L  N L         D          +  +DL FN+ 
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

Query: 184 HGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLG------SNQLFG 237
                   D+  +     L  +DL  N  +           LK   +        N+   
Sbjct: 501 TKLS----DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 238 MIPEEL--LESVIPIQELDLSGNGFT 261
             PE +    S   + +L +  N   
Sbjct: 557 EWPEGITLCPS---LTQLQIGSNDIR 579

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 25/194 (12%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKF-------IGPIPGRITDLWGLNYLNLSM 132
           ++LS N  +        + S L  ++L  N         +        + + L  ++L  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 133 NGFKGGFPGNLR--NLQQLKVLDLRKNKLWG---DIGGIMS--ELKNVEFVDLSFNRFHG 185
           N        + R   L  L  +DL  N             +          D   NR   
Sbjct: 498 NKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 186 GLGVGADNVSSIAN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELL 244
                      I    +L  L +G N I   +    + PN+ VL +  N    +    + 
Sbjct: 557 EWP------EGITLCPSLTQLQIGSNDIRK-VNE-KITPNISVLDIKDNPNISIDLSYVC 608

Query: 245 ESVIPIQELDLSGN 258
              I      L  +
Sbjct: 609 PY-IEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSN------NKFIGPIPGRITDLWGLNYLNLSMN 133
           + LS N+F+        + S+L+   + N      N+ +   P  IT    L  L +  N
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 134 GFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR 182
             +      +     + VLD++ N         +          L +++
Sbjct: 577 DIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 77  SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK 136
                  GN         +    SL  L + +N     +  +IT    ++ L++  N   
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP--NISVLDIKDNPNI 600

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGG 165
                 +    +  +  L  +K   DI G
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYDKTQ-DIRG 628

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 99.7 bits (249), Expect = 5e-24
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 8/186 (4%)

Query: 80  LSLSGNNFT--GRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           L LS ++          L ++S LQ L+LS N+ +        +   L  L+L+    K 
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 138 -GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
                  +NL  LKVL+L  + L      +   L  ++ ++L  N F  G     +++ +
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 197 IANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255
           +    LE+L L    ++     +F  L  +  + L  N+L     E L  S +    L+L
Sbjct: 475 L--GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL--SHLKGIYLNL 530

Query: 256 SGNGFT 261
           + N  +
Sbjct: 531 ASNHIS 536

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.5 bits (246), Expect = 1e-23
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 14/188 (7%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG- 138
           L L+  + +  +   L  +S+L+ L LS NKF        ++   L +L++  N  +   
Sbjct: 283 LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341

Query: 139 FPGNLRNLQQLKVLDLRKNKLW--GDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
             G L NL+ L+ LDL  + +         +  L +++ ++LS+N              +
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS------LKTEA 395

Query: 197 IAN-TNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL 253
                 LE+LDL    +  +     F  L  LKVL L  + L  +  E+L + +  +Q L
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DISSEQLFDGLPALQHL 454

Query: 254 DLSGNGFT 261
           +L GN F 
Sbjct: 455 NLQGNHFP 462

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.3 bits (235), Expect = 4e-22
 Identities = 40/187 (21%), Positives = 64/187 (34%), Gaps = 12/187 (6%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIG-PIPGRITDLWGLNYLNLSMNGFKGG 138
           L+LS N        A      L+ LDL+  +           +L  L  LNLS +     
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 139 FPGNLRNLQQLKVLDLRKNKL---WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVS 195
                  L  L+ L+L+ N            +  L  +E + LSF        +     +
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS---IDQHAFT 497

Query: 196 SIANTNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD 254
           S+    +  +DL  N +T         L  +  L L SN +   I   LL  +   + ++
Sbjct: 498 SL--KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI-ILPSLLPILSQQRTIN 553

Query: 255 LSGNGFT 261
           L  N   
Sbjct: 554 LRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.6 bits (228), Expect = 3e-21
 Identities = 34/186 (18%), Positives = 53/186 (28%), Gaps = 12/186 (6%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L  S N            + +L +LDL+  +              L+ L L+ N      
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
              L   + LK L   +  +       +   K +E + L  N            +     
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI------KLPKGFP 151

Query: 200 -TNLEVLDLGDNGITGELP-SFGMLPNLKV--LRLGSNQLFGMIPEELLESVIPIQELDL 255
              L+VLD  +N I          L       L L  N +   I     +S    Q L+ 
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDS-AVFQSLNF 209

Query: 256 SGNGFT 261
            G    
Sbjct: 210 GGTQNL 215

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.1 bits (224), Expect = 1e-20
 Identities = 39/195 (20%), Positives = 67/195 (34%), Gaps = 12/195 (6%)

Query: 70  SCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLN 129
            C  +  +   +         I   L +  S + L+ S N          + L  L +L+
Sbjct: 7   KCIEKEVNKTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLD 63

Query: 130 LSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGV 189
           L+            ++  +L  L L  N L       +S  K ++ +             
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS----- 118

Query: 190 GADNVSSIANTNLEVLDLGDNGITG-ELPSFGMLPNLKVLRLGSNQLFGMIPEELLESV- 247
             D +       LE L LG N I+  +LP       LKVL   +N +   + +E + S+ 
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQ 177

Query: 248 -IPIQELDLSGNGFT 261
                 L+L+GN   
Sbjct: 178 QATNLSLNLNGNDIA 192

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 15/191 (7%)

Query: 79  NLSLSGNNFTGRIVPALG--SISSLQYLDLSNNKFIGPIPGRITDLWGLN--YLNLSMNG 134
           +L+  G      I   L   +I SL      +       P     L  ++   +NL  + 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 135 FKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNV 194
           F             L+ LDL    L  ++   +  L  ++ + LS N+F           
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFEN------LCQ 318

Query: 195 SSIAN-TNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGM-IPEELLESVIPI 250
            S +N  +L  L +  N    EL +     L NL+ L L  + +         L ++  +
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 251 QELDLSGNGFT 261
           Q L+LS N   
Sbjct: 379 QSLNLSYNEPL 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 6e-18
 Identities = 33/186 (17%), Positives = 59/186 (31%), Gaps = 15/186 (8%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQ--YLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           L    N         + S+       L+L+ N  I  I     D      LN        
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGTQNLL 216

Query: 138 GFPGNLRN--LQQLKVLDLRKNKLWGDIGGIMSELK--NVEFVDLSFNRFHGGLGVGADN 193
                L+N  +Q L +              +   L   +VE ++L  + F         +
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN------IS 270

Query: 194 VSSIAN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE 252
            ++    + L+ LDL    ++        L  LK L L +N+    + +    +   +  
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTH 329

Query: 253 LDLSGN 258
           L + GN
Sbjct: 330 LSIKGN 335

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 80  LSLSGNNFTGRIVPALGSI---SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK 136
           L+L GN+F    +    S+     L+ L LS            T L  +N+++LS N   
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG 185
                 L +L+ +  L+L  N +   +  ++  L     ++L  N    
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.3 bits (248), Expect = 7e-24
 Identities = 43/186 (23%), Positives = 68/186 (36%), Gaps = 10/186 (5%)

Query: 80  LSLSGNNFT--GRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           L LS N  +  G    +    +SL++LDLS N  I  +      L  L +L+   +  K 
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR 413

Query: 138 -GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
                   +L++L  LD+       D  GI   L ++  + ++ N F             
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-- 471

Query: 197 IANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255
              TNL  LDL    +       F  L  L++L +  N L   +       +  +  LD 
Sbjct: 472 --TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDC 528

Query: 256 SGNGFT 261
           S N   
Sbjct: 529 SFNRIE 534

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.4 bits (243), Expect = 3e-23
 Identities = 39/183 (21%), Positives = 56/183 (30%), Gaps = 2/183 (1%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L LS          A   +  L  L L+ N      PG  + L  L  L           
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 140 PGNLRNLQQLKVLDLRKNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
              +  L  LK L++  N +    +    S L N+  VDLS+N     + V         
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLREN 179

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
                 LD+  N I            L  L L  N     I +  L+++  +    L   
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 259 GFT 261
            F 
Sbjct: 240 EFK 242

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.0 bits (242), Expect = 4e-23
 Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 10/183 (5%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
              L+  N     +     ++++  + L+               +    L++     K  
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV--PKHFKWQSLSIIRCQLKQF 322

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
              +L  L+    L L  NK    I      L ++ ++DLS N        G  + S + 
Sbjct: 323 PTLDLPFLK---SLTLTMNKG--SISFKKVALPSLSYLDLSRNALSF---SGCCSYSDLG 374

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
             +L  LDL  NG      +F  L  L+ L    + L  +       S+  +  LD+S  
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 259 GFT 261
              
Sbjct: 435 NTK 437

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.9 bits (239), Expect = 9e-23
 Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 16/188 (8%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNK--FIGPIPGRITDLWGLNYLNLSMNGFKG 137
           L+L+ N  +  I     ++ SL YLDLS N   F G           L +L+LS NG   
Sbjct: 333 LTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDI-GGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
               N   L++L+ LD + + L           L+ + ++D+S+           D    
Sbjct: 391 -MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI------DFDGI 443

Query: 197 IAN-TNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL 253
               T+L  L +  N       S  F    NL  L L   QL   I   + +++  +Q L
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLL 502

Query: 254 DLSGNGFT 261
           ++S N   
Sbjct: 503 NMSHNNLL 510

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.9 bits (239), Expect = 1e-22
 Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 13/189 (6%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           N+ LS N        +  + S LQ+LDLS  +           L  L+ L L+ N  +  
Sbjct: 36  NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
            PG+   L  L+ L   + KL       + +L  ++ ++++ N  H          +  +
Sbjct: 96  SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH-----SCKLPAYFS 150

Query: 199 N-TNLEVLDLGDNGITGELPS-----FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE 252
           N TNL  +DL  N I     +              L +  N +   I ++  +  I + E
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQG-IKLHE 208

Query: 253 LDLSGNGFT 261
           L L GN  +
Sbjct: 209 LTLRGNFNS 217

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.3 bits (235), Expect = 4e-22
 Identities = 36/186 (19%), Positives = 63/186 (33%), Gaps = 12/186 (6%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNGFKGG 138
           L LS N     +      +  LQ+LD  ++             L  L YL++S    K  
Sbjct: 381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDI-GGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
           F G    L  L  L +  N    +    + +   N+ F+DLS  +          +    
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ------ISWGVF 493

Query: 198 AN-TNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255
                L++L++  N +     S +  L +L  L    N++       L      +   +L
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI-ETSKGILQHFPKSLAFFNL 552

Query: 256 SGNGFT 261
           + N   
Sbjct: 553 TNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 4e-21
 Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 15/187 (8%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           +LS+          P L  +  L+ L L+ NK  G I  +   L  L+YL+LS N     
Sbjct: 311 SLSIIRCQLKQ--FPTL-DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFS 365

Query: 139 FPGNLRNLQ--QLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
              +  +L    L+ LDL  N     +      L+ ++ +D   +             S+
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKR-----VTEFSA 419

Query: 197 IAN-TNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD 254
             +   L  LD+       +    F  L +L  L++  N         +  +   +  LD
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 255 LSGNGFT 261
           LS     
Sbjct: 480 LSKCQLE 486

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 5e-21
 Identities = 36/197 (18%), Positives = 65/197 (32%), Gaps = 13/197 (6%)

Query: 70  SCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLN 129
            C     ++         + ++   + S  S + +DLS N          ++   L +L+
Sbjct: 6   PCIEVVPNITYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLD 62

Query: 130 LSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGV 189
           LS    +         L  L  L L  N +     G  S L ++E +     +       
Sbjct: 63  LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA----- 117

Query: 190 GADNVSSIANTNLEVLDLGDNGITG--ELPSFGMLPNLKVLRLGSNQLFGMIPEE---LL 244
             ++        L+ L++  N I        F  L NL  + L  N +  +   +   L 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 245 ESVIPIQELDLSGNGFT 261
           E+      LD+S N   
Sbjct: 178 ENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 30/192 (15%), Positives = 57/192 (29%), Gaps = 21/192 (10%)

Query: 80  LSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRITDLW--------GLNYLNL 130
           L+L GN  +  I+   L +++ L    L   +F       I +           ++   L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 131 SMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVG 190
           +              L  +  + L    +         +    + + +   +        
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV--PKHFKWQSLSIIRCQL------- 319

Query: 191 ADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIP- 249
                ++    L+ L L  N  +        LP+L  L L  N L         +     
Sbjct: 320 -KQFPTLDLPFLKSLTLTMNKGSI-SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 250 IQELDLSGNGFT 261
           ++ LDLS NG  
Sbjct: 378 LRHLDLSFNGAI 389

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 5e-22
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
             ++ ++    +     S  +++ LDLS N         +     L  LNLS N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
             +L +L  L+ LDL  N +       +    ++E +  + N            VS    
Sbjct: 73  TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS--------RVSCSRG 119

Query: 200 TNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
              + + L +N IT  L     G    ++ L L  N++  +   EL  S   ++ L+L  
Sbjct: 120 QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 258 NGFT 261
           N   
Sbjct: 179 NFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.9 bits (208), Expect = 4e-19
 Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 20/181 (11%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L+ N         L    S++ L  +NN  I  +        G   + L+ N      
Sbjct: 85  LDLNNNYVQ-----ELLVGPSIETLHAANNN-ISRVSCSR--GQGKKNIYLANNKITMLR 136

Query: 140 PGNLRNLQQLKVLDLRKNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
             +     +++ LDL+ N++   +   + +    +E ++L +N  +        +V    
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--------DVKGQV 188

Query: 199 N-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
               L+ LDL  N +    P F     +  + L +N+L  +I +  L     ++  DL G
Sbjct: 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKA-LRFSQNLEHFDLRG 246

Query: 258 N 258
           N
Sbjct: 247 N 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 7e-13
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 144 RNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNL 202
           +N  + K+  +  + L   +  +     NV+ +DLS N             + +A  T L
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA------ADLAPFTKL 60

Query: 203 EVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           E+L+L  N +  E      L  L+ L L +N +      + L     I+ L  + N  +
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 35/182 (19%), Positives = 53/182 (29%), Gaps = 35/182 (19%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIG-PIPGRITDLWGLNYLNLSMNGFKG 137
           N+ L+ N  T       G  S +QYLDL  N+               L +LNL  N    
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
              G +    +LK LDL  NKL               F+   F                 
Sbjct: 183 DVKGQV-VFAKLKTLDLSSNKL--------------AFMGPEFQSA-------------- 213

Query: 198 ANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256
               +  + L +N +   +  +     NL+   L  N        +       +Q +   
Sbjct: 214 --AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 257 GN 258
             
Sbjct: 271 TV 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.6 bits (230), Expect = 1e-21
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
             ++ ++    +     S  +++ LDLS N         +     L  LNLS N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
             +L +L  L+ LDL  N +       +    ++E +  + N            VS    
Sbjct: 73  TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS--------RVSCSRG 119

Query: 200 TNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
              + + L +N IT  L     G    ++ L L  N++  +   EL  S   ++ L+L  
Sbjct: 120 QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 258 NGFT 261
           N   
Sbjct: 179 NFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.4 bits (206), Expect = 2e-18
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 20/181 (11%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L+ N         L    S++ L  +NN  I  +        G   + L+ N      
Sbjct: 85  LDLNNNYVQ-----ELLVGPSIETLHAANNN-ISRVSCSR--GQGKKNIYLANNKITMLR 136

Query: 140 PGNLRNLQQLKVLDLRKNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
             +     +++ LDL+ N++   +   + +    +E ++L +N  +        +V    
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--------DVKGQV 188

Query: 199 N-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
               L+ LDL  N +    P F     +  + L +N+L  +I + L  S   ++  DL G
Sbjct: 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQ-NLEHFDLRG 246

Query: 258 N 258
           N
Sbjct: 247 N 247

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 6e-14
 Identities = 26/182 (14%), Positives = 52/182 (28%), Gaps = 4/182 (2%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L LS N     + P   S + + ++ L NNK +  I   +     L + +L  NGF  G 
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
             +    +  +V  + K  +    G    E                     AD + ++  
Sbjct: 254 LRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR 312

Query: 200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG 259
               +L    +               + +     Q    + +++         L+     
Sbjct: 313 KEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKA 371

Query: 260 FT 261
             
Sbjct: 372 LD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 3e-12
 Identities = 41/186 (22%), Positives = 56/186 (30%), Gaps = 21/186 (11%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIG-PIPGRITDLWGLNYLNLSMNGFKG 137
           N+ L+ N  T       G  S +QYLDL  N+               L +LNL  N    
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
              G +    +LK LDL  NKL   +G        V ++ L  N+              I
Sbjct: 183 DVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL-----------VLI 229

Query: 198 AN-----TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE 252
                   NLE  DL  NG            N +V  +        +  +  E       
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT-VKKLTGQNEEECTVPTL 288

Query: 253 LDLSGN 258
                 
Sbjct: 289 GHYGAY 294

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 14/118 (11%)

Query: 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLE 203
           N  + K+  +  + L   +  +     NV+ +DLS N             + +A  T LE
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA------ADLAPFTKLE 61

Query: 204 VLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           +L+L  N +  E      L  L+ L L +N +      + L     I+ L  + N  +
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 20/182 (10%), Positives = 35/182 (19%), Gaps = 5/182 (2%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            +SL  N     I  AL    +L++ DL  N F      R           ++    K  
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL-RDFFSKNQRVQTVAKQTVKKL 275

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
              N        +                  L  ++  + +     G             
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE-TERLECEREN 334

Query: 199 NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
                 +D         +            L      L          +   +       
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE-QVSNGRRAHAELDGTLQQA 393

Query: 258 NG 259
            G
Sbjct: 394 VG 395

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.0 bits (223), Expect = 3e-21
 Identities = 40/164 (24%), Positives = 54/164 (32%), Gaps = 17/164 (10%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPI-------PGRITDLWGLNYLNLSM 132
           LS++  +        +    +L  LDLS+N  +G         P +   L  L   N  M
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 133 NGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIM-SELKNVEFVDLSFNRFHGGLGVGA 191
               G          QL+ LDL  N L    G         +  ++LSF           
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ------ 267

Query: 192 DNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL 235
             V       L VLDL  N +    PS   LP +  L L  N  
Sbjct: 268 --VPKGLPAKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.1 bits (187), Expect = 3e-16
 Identities = 42/196 (21%), Positives = 65/196 (33%), Gaps = 20/196 (10%)

Query: 79  NLSLSGNNFTGRIVPALGSIS--SLQYLDLSNNKFIGPIPGRITDLW-----GLNYLNLS 131
            L+L     TG   P L   +   L  L+L N  +       + +L      GL  L+++
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIA 157

Query: 132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIG----GIMSELKNVEFVDLSFNRFHGGL 187
                      +R    L  LDL  N   G+ G        +   ++ + L         
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 188 GVGADNVSSIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLE 245
           GV +   ++     L+ LDL  N +       S      L  L L    L   +P+ L  
Sbjct: 218 GVCSALAAA--RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLPA 274

Query: 246 SVIPIQELDLSGNGFT 261
               +  LDLS N   
Sbjct: 275 K---LSVLDLSYNRLD 287

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 7e-16
 Identities = 44/196 (22%), Positives = 69/196 (35%), Gaps = 14/196 (7%)

Query: 79  NLSLSGNNFTGRIVP---ALGSISSLQYLDLSNNKFIGPIPGRITDLWG--LNYLNLSMN 133
            L++       RI+     +  IS LQ L L N +  G  P  + +  G  LN LNL   
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 134 GFKGG--FPGNLRNL--QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGV 189
            +     +   L+      LKVL + +          +     +  +DLS N   G  G+
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 190 GADNVSSIANTNLEVLDLGDNGIT---GELPS-FGMLPNLKVLRLGSNQLFGMIPEELLE 245
            +          L+VL L + G+    G   +       L+ L L  N L         +
Sbjct: 192 ISALCPL-KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 246 SVIPIQELDLSGNGFT 261
               +  L+LS  G  
Sbjct: 251 WPSQLNSLNLSFTGLK 266

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.3 bits (225), Expect = 3e-21
 Identities = 38/184 (20%), Positives = 82/184 (44%), Gaps = 19/184 (10%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L+++ +      V  + +++ L  L L+ N+     P  +  L  L+Y    +N     
Sbjct: 159 YLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD- 213

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
               + N+ +L  L +  NK+  D+  + + L  + ++++  N+          +++++ 
Sbjct: 214 -ITPVANMTRLNSLKIGNNKI-TDLSPL-ANLSQLTWLEIGTNQIS--------DINAVK 262

Query: 199 N-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
           + T L++L++G N I+ ++     L  L  L L +NQL     E  +  +  +  L LS 
Sbjct: 263 DLTKLKMLNVGSNQIS-DISVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQ 320

Query: 258 NGFT 261
           N  T
Sbjct: 321 NHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.8 bits (221), Expect = 9e-21
 Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 20/185 (10%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           +   L   + T   V     + S+  L ++  K +  I G I  L  L YLNL+ N    
Sbjct: 25  IRAVLQKASVTD--VVTQEELESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQITD 80

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
                L NL +L  L +  NK+  DI  +   L N+  + L+ +            +S +
Sbjct: 81  --ISPLSNLVKLTNLYIGTNKI-TDISAL-QNLTNLRELYLNEDNISD--------ISPL 128

Query: 198 AN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256
           AN T +  L+LG N    +L     +  L  L +  +++  + P   L     +  L L+
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTD---LYSLSLN 185

Query: 257 GNGFT 261
            N   
Sbjct: 186 YNQIE 190

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 87.2 bits (217), Expect = 4e-20
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 21/182 (11%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           +LSL+ N      +  L S++SL Y     N+     P  + ++  LN L +  N     
Sbjct: 181 SLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD- 235

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
               L NL QL  L++  N++  DI  +  +L  ++ +++  N+          ++S + 
Sbjct: 236 -LSPLANLSQLTWLEIGTNQI-SDINAV-KDLTKLKMLNVGSNQI--------SDISVLN 284

Query: 199 N-TNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256
           N + L  L L +N +  E     G L NL  L L  N +  + P   L S+  +   D +
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFA 341

Query: 257 GN 258
             
Sbjct: 342 NQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.1 bits (209), Expect = 4e-19
 Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 16/157 (10%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
            +   N  T   +  + +++ L  L + NNK     P  + +L  L +L +  N      
Sbjct: 204 FTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-- 257

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
              +++L +LK+L++  N++  DI  + + L  +  + L+ N+         +++  I  
Sbjct: 258 INAVKDLTKLKMLNVGSNQI-SDISVL-NNLSQLNSLFLNNNQLGN------EDMEVIGG 309

Query: 200 -TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL 235
            TNL  L L  N IT  +     L  +      +  +
Sbjct: 310 LTNLTTLFLSQNHITD-IRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.7 bits (208), Expect = 6e-19
 Identities = 30/187 (16%), Positives = 67/187 (35%), Gaps = 20/187 (10%)

Query: 76  GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGF 135
           G+  L+          +     ++      L        +     +L  +  L ++    
Sbjct: 1   GAATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 136 KGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVS 195
                  +  L  L+ L+L  N++  DI  + S L  +  + +  N+          ++S
Sbjct: 57  AS--IQGIEYLTNLEYLNLNGNQI-TDISPL-SNLVKLTNLYIGTNKIT--------DIS 104

Query: 196 SIAN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD 254
           ++ N TNL  L L ++ I+  +     L  +  L LG+N     +    L ++  +  L 
Sbjct: 105 ALQNLTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLT 161

Query: 255 LSGNGFT 261
           ++ +   
Sbjct: 162 VTESKVK 168

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.3 bits (173), Expect = 4e-14
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L +  N  T   +  L ++S L +L++  N+        + DL  L  LN+  N      
Sbjct: 226 LKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISD-- 279

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
              L NL QL  L L  N+L  +   ++  L N+  + LS N           ++  +A+
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI--------TDIRPLAS 331

Query: 200 -TNLEVLDLGDNGIT 213
            + ++  D  +  I 
Sbjct: 332 LSKMDSADFANQVIK 346

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 91.2 bits (227), Expect = 4e-21
 Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L +S N  +   +  L  +++L+ L  +NN+     P  +  L  L+ L+L+ N  K  
Sbjct: 181 RLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD- 235

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
             G L +L  L  LDL  N++  ++  + S L  +  + L  N+          N+S +A
Sbjct: 236 -IGTLASLTNLTDLDLANNQI-SNLAPL-SGLTKLTELKLGANQI--------SNISPLA 284

Query: 199 N-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
             T L  L+L +N +   +     L NL  L L  N +  + P   + S+  +Q L    
Sbjct: 285 GLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYN 340

Query: 258 NGFT 261
           N  +
Sbjct: 341 NKVS 344

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.6 bits (223), Expect = 1e-20
 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 22/183 (12%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L+L  N  T   +  L ++++L  L+LS+N         ++ L  L  L+          
Sbjct: 117 LTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD--- 169

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
              L NL  L+ LD+  NK+  DI  + ++L N+E +  + N+          +++ +  
Sbjct: 170 LKPLANLTTLERLDISSNKV-SDISVL-AKLTNLESLIATNNQIS--------DITPLGI 219

Query: 200 -TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
            TNL+ L L  N +  ++ +   L NL  L L +NQ+  + P   L     + EL L  N
Sbjct: 220 LTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAPLSGLTK---LTELKLGAN 275

Query: 259 GFT 261
             +
Sbjct: 276 QIS 278

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 22/183 (12%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           ++ S N  T   +  L +++ L  + ++NN+     P  + +L  L  L L  N      
Sbjct: 73  INFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-- 126

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
              L+NL  L  L+L  N +  DI  + S L +++ +                ++  +AN
Sbjct: 127 IDPLKNLTNLNRLELSSNTI-SDISAL-SGLTSLQQLSFGNQVT---------DLKPLAN 175

Query: 200 -TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
            T LE LD+  N ++ ++     L NL+ L   +NQ+  + P  +L +   + EL L+GN
Sbjct: 176 LTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGN 231

Query: 259 GFT 261
              
Sbjct: 232 QLK 234

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 43/180 (23%), Positives = 68/180 (37%), Gaps = 18/180 (10%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L+ N  +   +  L  ++ L  L L  N+     P  +  L  L  L L+ N  +   
Sbjct: 248 LDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-- 301

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
              + NL+ L  L L  N +  DI  + S L  ++ +    N+          +VSS+AN
Sbjct: 302 ISPISNLKNLTYLTLYFNNI-SDISPV-SSLTKLQRLFFYNNKV--------SDVSSLAN 351

Query: 200 -TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
            TN+  L  G N I+  L     L  +  L L                 IP    +++G 
Sbjct: 352 LTNINWLSAGHNQISD-LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.3 bits (204), Expect = 3e-18
 Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 20/181 (11%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           + +++ +    +I     +++      L        +    TDL  +  L     G K  
Sbjct: 5   SATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS- 60

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
               +  L  L  ++   N+L  DI  +   L  +  + ++ N+          +++ +A
Sbjct: 61  -IDGVEYLNNLTQINFSNNQL-TDITPL-KNLTKLVDILMNNNQIA--------DITPLA 109

Query: 199 N-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
           N TNL  L L +N IT  +     L NL  L L SN +  +     L S   +Q+L    
Sbjct: 110 NLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTS---LQQLSFGN 165

Query: 258 N 258
            
Sbjct: 166 Q 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 7e-13
 Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 14/157 (8%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           NL L+ N      +  + ++ +L YL L  N      P  ++ L  L  L    N     
Sbjct: 291 NLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD- 345

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
              +L NL  +  L    N++  D+  + + L  +  + L+   +          V+  A
Sbjct: 346 -VSSLANLTNINWLSAGHNQI-SDLTPL-ANLTRITQLGLNDQAWTN------APVNYKA 396

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL 235
           N ++        G      +     +     +  N  
Sbjct: 397 NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 13/95 (13%)

Query: 168 SELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLEVLDLGDNGITGELPSFGMLPNLK 226
           + L       L              +  S  +   +  L     GI   +     L NL 
Sbjct: 21  TALAEKMKTVLGKTNV--------TDTVSQTDLDQVTTLQADRLGIK-SIDGVEYLNNLT 71

Query: 227 VLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            +   +NQL  + P + L     + ++ ++ N   
Sbjct: 72  QINFSNNQLTDITPLKNLTK---LVDILMNNNQIA 103

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 91.3 bits (227), Expect = 4e-21
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 14/185 (7%)

Query: 80  LSLSGNNFT--GRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           L LS N  +  G    +    +SL+YLDLS N  +  +      L  L +L+   +  K 
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 138 GFPGN-LRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGA-DNVS 195
               +   +L+ L  LD+          GI + L ++E + ++ N F           + 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL- 469

Query: 196 SIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL 253
                NL  LDL    +  +L   +F  L +L+VL + SNQL   +P+ + + +  +Q++
Sbjct: 470 ----RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKI 523

Query: 254 DLSGN 258
            L  N
Sbjct: 524 WLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.0 bits (221), Expect = 2e-20
 Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 16/189 (8%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNK--FIGPIPGRITDLWGLNYLNLSMNGFK 136
            L+ + N        +   + SL++LDLS N   F G           L YL+LS NG  
Sbjct: 329 RLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 137 GGFPGNLRNLQQLKVLDLRKNKL-WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGA-DNV 194
                N   L+QL+ LD + + L       +   L+N+ ++D+S          G  +  
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNG- 443

Query: 195 SSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE 252
                ++LEVL +  N          F  L NL  L L   QL   +      S+  +Q 
Sbjct: 444 ----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQV 498

Query: 253 LDLSGNGFT 261
           L+++ N   
Sbjct: 499 LNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 2e-19
 Identities = 46/189 (24%), Positives = 69/189 (36%), Gaps = 13/189 (6%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           NL LS N        +  S   LQ LDLS  +      G    L  L+ L L+ N  +  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRF-HGGLGVGADNVSSI 197
             G    L  L+ L   +  L       +  LK ++ ++++ N      L     N+   
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--- 148

Query: 198 ANTNLEVLDLGDNGITG-ELPSFGMLPNLKV----LRLGSNQLFGMIPEELLESVIPIQE 252
             TNLE LDL  N I         +L  + +    L L  N +   I     +  I + +
Sbjct: 149 --TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKE-IRLHK 204

Query: 253 LDLSGNGFT 261
           L L  N  +
Sbjct: 205 LTLRNNFDS 213

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 6e-18
 Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 15/187 (8%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG--FK 136
           +L L    F     P L  + SL+ L  ++NK          DL  L +L+LS NG  FK
Sbjct: 308 HLELVNCKFGQ--FPTL-KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFK 362

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
           G    +      LK LDL  N +   +      L+ +E +D   +             S 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQ-----MSEFSV 416

Query: 197 IAN-TNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD 254
             +  NL  LD+            F  L +L+VL++  N        ++   +  +  LD
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 255 LSGNGFT 261
           LS     
Sbjct: 477 LSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.8 bits (197), Expect = 3e-17
 Identities = 40/182 (21%), Positives = 64/182 (35%), Gaps = 2/182 (1%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L LS          A  S+S L  L L+ N       G  + L  L  L           
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 140 PGNLRNLQQLKVLDLRKNKL-WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
              + +L+ LK L++  N +    +    S L N+E +DLS N+           +  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
             NL  LDL  N +    P       L  L L +N     + +  ++ +  ++   L   
Sbjct: 177 LLNLS-LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 259 GF 260
            F
Sbjct: 236 EF 237

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.6 bits (181), Expect = 3e-15
 Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 21/225 (9%)

Query: 39  IQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPAL-GS 97
           +    LG   +  N+     +    +    +            L+  ++    +  L   
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE--------EFRLAYLDYYLDDIIDLFNC 280

Query: 98  ISSLQYLDLSNNKFIGPIPG-RITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156
           ++++    L +                 L  +N     F          L+ LK L    
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL------KLKSLKRLTFTS 334

Query: 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216
           NK       +  +L ++EF+DLS N        G  + S    T+L+ LDL  NG+    
Sbjct: 335 NKGGNAFSEV--DLPSLEFLDLSRNGLSF---KGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 217 PSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            +F  L  L+ L    + L  M    +  S+  +  LD+S     
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 9/158 (5%)

Query: 105 DLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIG 164
                 F   IP  +   +    L+LS N  +     +  +  +L+VLDL + ++     
Sbjct: 13  QCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 165 GIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLP 223
           G    L ++  + L+ N     L +GA +      ++L+ L   +  +        G L 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ-SLALGAFS----GLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 224 NLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            LK L +  N +      E   ++  ++ LDLS N   
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 32/159 (20%)

Query: 80  LSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           L    +N           S+ +L YLD+S+        G    L  L  L ++ N F+  
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 139 F-PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
           F P     L+ L  LDL + +L         +L    F  L                   
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQL--------EQLSPTAFNSL------------------- 493

Query: 198 ANTNLEVLDLGDNGITG-ELPSFGMLPNLKVLRLGSNQL 235
             ++L+VL++  N +       F  L +L+ + L +N  
Sbjct: 494 --SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.8 bits (223), Expect = 1e-20
 Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 20/184 (10%)

Query: 80  LSLSGNNFTGRIVP---ALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNG 134
           L LS N      +      G+  SLQ L LS N    +      +  L  L  L++S N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 135 FKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNV 194
           F    P + +  ++++ L+L    +      I    + +E +D+S N           + 
Sbjct: 399 FHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNL---------DS 445

Query: 195 SSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD 254
            S+    L+ L +  N +   LP   + P L V+++  NQL   +P+ + + +  +Q++ 
Sbjct: 446 FSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQL-KSVPDGIFDRLTSLQKIW 503

Query: 255 LSGN 258
           L  N
Sbjct: 504 LHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.0 bits (208), Expect = 1e-18
 Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 20/187 (10%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKF---IGPIPGRITDLWGLNYLNLSMNGFK 136
           +++  +            + SL++LDLS N                  L  L LS N  +
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 137 --GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNV 194
                   L  L+ L  LD+ +N     +       + + F++LS              V
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR--------VV 425

Query: 195 SSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD 254
            +     LEVLD+ +N +      F  LP L+ L +  N+L  +    L      +  + 
Sbjct: 426 KTCIPQTLEVLDVSNNNLD-SFSLF--LPRLQELYISRNKLKTLPDASLFPV---LLVMK 479

Query: 255 LSGNGFT 261
           +S N   
Sbjct: 480 ISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 18/188 (9%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L +        +      +  ++ + + N+K           L  L +L+LS N     
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 139 FPGN---LRNLQQLKVLDLRKNKLW--GDIGGIMSELKNVEFVDLSFNRFHGGLGVGADN 193
           +  N         L+ L L +N L      G I+  LKN+  +D+S N FH       D+
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH----PMPDS 405

Query: 194 VSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL 253
                   +  L+L   GI   + +  +   L+VL + +N L       L      +QEL
Sbjct: 406 CQWP--EKMRFLNLSSTGIR-VVKT-CIPQTLEVLDVSNNNL-DSFSLFLPR----LQEL 456

Query: 254 DLSGNGFT 261
            +S N   
Sbjct: 457 YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 31/221 (14%), Positives = 71/221 (32%), Gaps = 40/221 (18%)

Query: 80  LSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           L +        I       ++SL  L++            +  +  +++L L ++     
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 139 FPGNLRNLQQLKVLDLRKNKLWG----------------------------------DIG 164
                  L  ++ L+LR   L                                     + 
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 165 GIMSELKNVEFVDLSFNR---FHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFG 220
             + EL  VEF D + N    F+         +  +    +  L +    +  +L   + 
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 221 MLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           +L  +K + + ++++F ++P    + +  ++ LDLS N   
Sbjct: 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 44/195 (22%), Positives = 69/195 (35%), Gaps = 37/195 (18%)

Query: 69  VSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYL 128
           +SCD             +FT   +P+ G  ++++ LDLS NK      G +     L  L
Sbjct: 2   LSCDASG---VCDGRSRSFTS--IPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVL 55

Query: 129 NLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG 188
            L  +           +L  L+ LDL  N L        S L +  F  L          
Sbjct: 56  ILKSSRINTIEGDAFYSLGSLEHLDLSDNHL--------SSLSSSWFGPL---------- 97

Query: 189 VGADNVSSIANTNLEVLDLGDNGIT--GELPSFGMLPNLKVLRLGSNQLFGMIPEELLES 246
                      ++L+ L+L  N     G    F  L NL+ LR+G+ + F  I       
Sbjct: 98  -----------SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 247 VIPIQELDLSGNGFT 261
           +  + EL++      
Sbjct: 147 LTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 9/171 (5%)

Query: 95  LGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154
               +     D + ++          +   +  L++               L+++K + +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITG 214
             +K++         LK++EF+DLS N          ++    A  +L+ L L  N +  
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVE--EYLKNSACKGAWPSLQTLVLSQNHLR- 374

Query: 215 ELP----SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            +         L NL  L +  N     +P+   +    ++ L+LS  G  
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTF-HPMPDS-CQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 40/233 (17%), Positives = 81/233 (34%), Gaps = 58/233 (24%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKF--------------------------- 111
           +L+L  +     +      +SS++YL+L +                              
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 112 -------IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQ--------QLKVLDLRK 156
                  +  +   I +L  + + + ++NG     P     +          ++ L + +
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 157 NKLWGDIGGIMSELKNVEFVDLSFNR---FHGGLGVGADNVSSIANTNLEVLDLGDNGIT 213
             L+ D+  + S L+ V+ + +  ++                     +LE LDL +N + 
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL--------KSLEFLDLSENLMV 347

Query: 214 GELP----SFGMLPNLKVLRLGSNQLFGM-IPEELLESVIPIQELDLSGNGFT 261
            E        G  P+L+ L L  N L  M    E+L ++  +  LD+S N F 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 24/124 (19%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L +S N F   +  +      +++L+LS+   I  +   I     L  L++S N     F
Sbjct: 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCI--PQTLEVLDVSNNNLDS-F 446

Query: 140 PGNLRNLQ-------------------QLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180
              L  LQ                    L V+ + +N+L     GI   L +++ + L  
Sbjct: 447 SLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

Query: 181 NRFH 184
           N + 
Sbjct: 507 NPWD 510

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.8 bits (215), Expect = 2e-19
 Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 21/189 (11%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           + L  N+           +  LQ LDL +N         I  +  +  + LS N      
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLP 397

Query: 140 PGNLRNLQQLKVLDLRKNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
             NL       ++ L +N+L   DI   +  + +++ + L+ NRF    G    +     
Sbjct: 398 KINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE---- 449

Query: 199 NTNLEVLDLGDNGITGELPS------FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE 252
           N +LE L LG+N +     +      F  L +L+VL L  N L   +P  +   +  ++ 
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRG 508

Query: 253 LDLSGNGFT 261
           L L+ N  T
Sbjct: 509 LSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.2 bits (211), Expect = 5e-19
 Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L+L+ N        A   + +LQ L+LS N            L  + Y++L  N      
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 140 PGNLRNLQQLKVLDLRKNKL---------------WGDIGGIMSELKNVEFVDLSFNRFH 184
               + L++L+ LDLR N L                  +  +         + LS NR  
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 185 GGLGVGADNVSSIAN-TNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPE 241
                  D +  +    +L++L L  N  +           P+L+ L LG N L      
Sbjct: 415 -----NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 242 ELLESVIP----IQELDLSGNGFT 261
           EL   V      +Q L L+ N   
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.2 bits (198), Expect = 3e-17
 Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 26/204 (12%)

Query: 80  LSLSGNNFTG-RIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWG--LNYLNLSMNGFK 136
           L LS N      + P+ G ++SL+ +D S+N+        +  L G  L++ +L+ N   
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 137 GGFPGNLRNLQQ------LKVLDLRKNKLWGDIGGI------------MSELKNVEFVDL 178
                +            L++LD+  N    DI G             +    ++     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 179 SFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFG 237
            F+          +  + +A +++  LDL    +       F  L +LKVL L  N++  
Sbjct: 248 GFHNIK---DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 238 MIPEELLESVIPIQELDLSGNGFT 261
            I +E    +  +Q L+LS N   
Sbjct: 305 -IADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 39/196 (19%), Positives = 60/196 (30%), Gaps = 39/196 (19%)

Query: 70  SCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLN 129
           SC  +           N T   VP    +++ + L LS N            L  L  L 
Sbjct: 1   SCSFDGRIAFYR--FCNLTQ--VPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 130 LSMNGFKGGFPGN-LRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG 188
           L              RNL  L++LDL  +K++                 L  + F G   
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY----------------FLHPDAFQG--- 95

Query: 189 VGADNVSSIANTNLEVLDLGDNGITGELPS---FGMLPNLKVLRLGSNQLFGMIPEELLE 245
                       +L  L L   G++  +     F  L  L  L L  NQ+  +       
Sbjct: 96  ----------LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 246 SVIPIQELDLSGNGFT 261
            +  ++ +D S N   
Sbjct: 146 KLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 80  LSLSGNNFTGRIVPALGSI--SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
                +N           +  SS+++LDLS+             L  L  LNL+ N    
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
                   L  L+VL+L  N L          L  V ++DL  N       +       +
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA---IIQDQTFKFL 361

Query: 198 ANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
               L+ LDL DN +T    +   +P++  + L  N+L       L +  +    + LS 
Sbjct: 362 --EKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKL-----VTLPKINLTANLIHLSE 410

Query: 258 NGFT 261
           N   
Sbjct: 411 NRLE 414

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 37/185 (20%), Positives = 58/185 (31%), Gaps = 39/185 (21%)

Query: 80  LSLSGNNFTGRIVPAL-GSISSLQYLDLSNNKFIGPIPGRI-----TDLWGLNYLNLSMN 133
           L L+ N F+            SL+ L L  N         +       L  L  L L+ N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 134 GFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADN 193
                 PG   +L  L+ L L  N+L                  LS N            
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRL----------------TVLSHNDLPA-------- 526

Query: 194 VSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL 253
                  NLE+LD+  N +    P+  +  +L VL +  N+           + +    +
Sbjct: 527 -------NLEILDISRNQLLA--PNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNV 577

Query: 254 DLSGN 258
            ++G 
Sbjct: 578 TIAGP 582

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.9 bits (208), Expect = 3e-19
 Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 24/189 (12%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKGG 138
           L L  N        A   ++ L+ LDLS+N  +  +       L  L+ L+L   G +  
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDI-GGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
            PG  R L  L+ L L+ N L   +      +L N+  + L  NR            SS+
Sbjct: 121 GPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRI-----------SSV 168

Query: 198 AN------TNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIP 249
                    +L+ L L  N +   +    F  L  L  L L +N L   +P E L  +  
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRA 226

Query: 250 IQELDLSGN 258
           +Q L L+ N
Sbjct: 227 LQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 39/189 (20%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            + L GN  +     +  +  +L  L L +N          T L  L  L+LS N     
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 139 FP-GNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
                   L +L  L L +  L     G+   L  ++++ L  N            + ++
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-----------LQAL 144

Query: 198 AN------TNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIP 249
            +       NL  L L  N I+  +P  +F  L +L  L L  N++   +       +  
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGR 202

Query: 250 IQELDLSGN 258
           +  L L  N
Sbjct: 203 LMTLYLFAN 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 13/161 (8%)

Query: 80  LSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKG 137
           L LS N     + P     +  L  L L     +  +   +   L  L YL L  N  + 
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGA-DNVSS 196
                 R+L  L  L L  N++          L +++ + L  NR    +   A  ++  
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDL-- 200

Query: 197 IANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQL 235
                L  L L  N ++  LP+     L  L+ LRL  N  
Sbjct: 201 ---GRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 10/141 (7%)

Query: 124 GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRF 183
               + L  N        + R  + L +L L  N L        + L  +E +DLS N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 184 HGGLGVGA-DNVSSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIP 240
              +       +       L  L L   G+  EL    F  L  L+ L L  N L   +P
Sbjct: 93  LRSVDPATFHGL-----GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALP 145

Query: 241 EELLESVIPIQELDLSGNGFT 261
           ++    +  +  L L GN  +
Sbjct: 146 DDTFRDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 80  LSLSGNNFTGRIVP--ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           L L  N      +P      + +L +L L  N+           L  L+ L L  N    
Sbjct: 134 LYLQDNALQ--ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
             P   R+L +L  L L  N L       ++ L+ ++++ L+ N + 
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.5 bits (207), Expect = 5e-19
 Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 14/188 (7%)

Query: 80  LSLSGNNFTGRIVP--ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           LSLS N  + +     +    +SL+YLDLS N  +  +      L  L +L+   +  K 
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 138 -GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGA-DNVS 195
                   +L+ L  LD+          GI + L ++E + ++ N F           + 
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL- 174

Query: 196 SIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL 253
                NL  LDL    +  +L   +F  L +L+VL +  N     +     + +  +Q L
Sbjct: 175 ----RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVL 228

Query: 254 DLSGNGFT 261
           D S N   
Sbjct: 229 DYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 9e-19
 Identities = 46/203 (22%), Positives = 71/203 (34%), Gaps = 31/203 (15%)

Query: 70  SCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLN 129
           SC        +  +    T   VP  G  SS   L+L +NK      G    L  L  L+
Sbjct: 6   SCSGTE----IRCNSKGLTS--VPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58

Query: 130 LSMNG--FKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGL 187
           LS NG  FKG    +      LK LDL  N +   +      L+ +E +D   +      
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSN----- 112

Query: 188 GVGADNVSSIAN-------TNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGM 238
                 +  ++         NL  LD+          +  F  L +L+VL++  N     
Sbjct: 113 ------LKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 239 IPEELLESVIPIQELDLSGNGFT 261
              ++   +  +  LDLS     
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 27/169 (15%)

Query: 80  LSLSGNNFTGRIVP--ALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFK 136
           L    +N   ++       S+ +L YLD+S+          I   L  L  L ++ N F+
Sbjct: 106 LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 137 GGF-PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVS 195
             F P     L+ L  LDL + +L        + L +++ +++S N F            
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-----------F 212

Query: 196 SIAN------TNLEVLDLGDNGITGELPS---FGMLPNLKVLRLGSNQL 235
           S+         +L+VLD   N I              +L  L L  N  
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 22/192 (11%)

Query: 75  SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMN 133
           S +  L+L  NN           +  L+ L L  N  I  I       L  LN L L  N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133

Query: 134 GFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS-FNRFHGGLGVGAD 192
                  G    L +L+ L LR N +        + + ++  +DL    +          
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL--------- 184

Query: 193 NVSSIAN------TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLES 246
               I+        NL+ L+LG   I  ++P+   L  L+ L +  N     I       
Sbjct: 185 --EYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHF-PEIRPGSFHG 240

Query: 247 VIPIQELDLSGN 258
           +  +++L +  +
Sbjct: 241 LSSLKKLWVMNS 252

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.9 bits (192), Expect = 1e-16
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 18/188 (9%)

Query: 80  LSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKG 137
           L L  N+   +I   A   ++SL  L+L +N  +  IP      L  L  L L  N  + 
Sbjct: 104 LQLGRNSIR-QIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIES 161

Query: 138 GFPGNLRNLQQLKVLDL-RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
                   +  L  LDL    KL     G    L N+++++L              ++ +
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--------DMPN 213

Query: 197 IAN-TNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL 253
           +     LE L++  N    E+   SF  L +LK L + ++Q+  +I     + +  + EL
Sbjct: 214 LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVEL 271

Query: 254 DLSGNGFT 261
           +L+ N  +
Sbjct: 272 NLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.6 bits (186), Expect = 8e-16
 Identities = 44/184 (23%), Positives = 66/184 (35%), Gaps = 38/184 (20%)

Query: 79  NLSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFK 136
            L L  N     I   A   + SL  LDL   K +  I       L+ L YLNL M   K
Sbjct: 151 ELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
                NL  L  L+ L++  N           E++   F  L                  
Sbjct: 210 --DMPNLTPLVGLEELEMSGNHF--------PEIRPGSFHGL------------------ 241

Query: 197 IANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD 254
              ++L+ L + ++ ++  +    F  L +L  L L  N L   +P +L   +  + EL 
Sbjct: 242 ---SSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELH 296

Query: 255 LSGN 258
           L  N
Sbjct: 297 LHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L+L   N     +P L  +  L+ L++S N F    PG    L  L  L +  +      
Sbjct: 201 LNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
                 L  L  L+L  N L      + + L+ +  + L  N ++
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 33/116 (28%)

Query: 148 QLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDL 207
             + L+L +N +          ++   F  L                      +LEVL L
Sbjct: 76  NTRYLNLMENNI--------QMIQADTFRHL---------------------HHLEVLQL 106

Query: 208 GDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           G N I  ++   +F  L +L  L L  N L  +IP    E +  ++EL L  N   
Sbjct: 107 GRNSIR-QIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIE 160

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.5 bits (204), Expect = 3e-18
 Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 22/187 (11%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKGG 138
           L+L  N      V +   +  L+ L LS N  I  I       L  LN L L  N     
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTI 127

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS-FNRFHGGLGVGADNVSSI 197
             G    L +LK L LR N +        + + ++  +DL    R            S I
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL-----------SYI 176

Query: 198 AN------TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQ 251
           +       +NL  L+L    +  E+P+   L  L  L L  N L   I     + ++ +Q
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQ 234

Query: 252 ELDLSGN 258
           +L +  +
Sbjct: 235 KLWMIQS 241

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 45/184 (24%), Positives = 66/184 (35%), Gaps = 38/184 (20%)

Query: 79  NLSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFK 136
            L L  N     I   A   I SL+ LDL   K +  I       L  L YLNL+M   +
Sbjct: 140 ELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
                NL  L +L  LDL  N L        S ++   F  L                  
Sbjct: 199 --EIPNLTPLIKLDELDLSGNHL--------SAIRPGSFQGL------------------ 230

Query: 197 IANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD 254
               +L+ L +  + I   +    F  L +L  + L  N L  ++P +L   +  ++ + 
Sbjct: 231 ---MHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIH 285

Query: 255 LSGN 258
           L  N
Sbjct: 286 LHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 55/221 (24%), Positives = 81/221 (36%), Gaps = 34/221 (15%)

Query: 51  WNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSIS-SLQYLDLSNN 109
             +      ++CP   +  SC  +   V       N     VP    IS + + L+L  N
Sbjct: 24  GCVAETGSAQTCP---SVCSCSNQFSKVICV--RKNLRE--VPD--GISTNTRLLNLHEN 74

Query: 110 KFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSE 169
           +           L  L  L LS N  +    G    L  L  L+L  N+L     G    
Sbjct: 75  QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134

Query: 170 LKNVEFVDLSFNRFHGGLGVGADNVSSIAN------TNLEVLDLGD-NGITGELP--SFG 220
           L  ++ + L  N              SI +       +L  LDLG+   ++  +   +F 
Sbjct: 135 LSKLKELWLRNNPI-----------ESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFE 182

Query: 221 MLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            L NL+ L L    L   IP   L  +I + ELDLSGN  +
Sbjct: 183 GLSNLRYLNLAMCNL-REIPN--LTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L+L+  N     +P L  +  L  LDLS N      PG    L  L  L +  +  +   
Sbjct: 190 LNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
                NLQ L  ++L  N L      + + L ++E + L  N ++
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.7 bits (202), Expect = 7e-18
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 19/190 (10%)

Query: 79  NLSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFK 136
           +L +  N+    I   A   ++SL+ L L     +  IP    + L GL  L L      
Sbjct: 132 SLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
                + + L +LKVL++        +        N+  + ++              V  
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT--------AVPY 241

Query: 197 IA---NTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQ 251
           +A      L  L+L  N I+  +       L  L+ ++L   QL  ++       +  ++
Sbjct: 242 LAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLR 299

Query: 252 ELDLSGNGFT 261
            L++SGN  T
Sbjct: 300 VLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 33/181 (18%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L   N       +   +  L+ L++S+  ++  +         L  L+++        
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
              +R+L  L+ L+L  N +        S ++     +L                     
Sbjct: 241 YLAVRHLVYLRFLNLSYNPI--------STIEGSMLHEL--------------------- 271

Query: 200 TNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
             L+ + L    +   +    F  L  L+VL +  NQL   + E +  SV  ++ L L  
Sbjct: 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDS 329

Query: 258 N 258
           N
Sbjct: 330 N 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 8e-13
 Identities = 44/210 (20%), Positives = 67/210 (31%), Gaps = 55/210 (26%)

Query: 61  SCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRIT 120
            CP       C  +  +V        F    VP  G  +  + LDL  N+ I  +     
Sbjct: 2   GCP---PRCECSAQDRAVLCH--RKRFVA--VPE-GIPTETRLLDLGKNR-IKTLN---- 48

Query: 121 DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDI-GGIMSELKNVEFVDLS 179
                                   +   L+ L+L +N +   +  G  + L N+  + L 
Sbjct: 49  -------------------QDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLR 88

Query: 180 FNRFHGGLGVGADNVSSIAN------TNLEVLDLGDNGITGELP--SFGMLPNLKVLRLG 231
            NR              I        +NL  LD+ +N I   L    F  L NLK L +G
Sbjct: 89  SNRL-----------KLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVG 136

Query: 232 SNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            N L   I       +  +++L L     T
Sbjct: 137 DNDL-VYISHRAFSGLNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 80  LSLSGNNFTGRIVP--ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           LS++  N T   VP  A+  +  L++L+LS N         + +L  L  + L       
Sbjct: 229 LSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
             P   R L  L+VL++  N+L      +   + N+E + L  N   
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.5 bits (201), Expect = 8e-18
 Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 13/185 (7%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK--G 137
             LS ++     +    S SS  +L+ + N F   +    + L  L  L L  NG K   
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 138 GFPGNLRNLQQLKVLDLRKNKL-WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
                 +N+  L+ LD+  N L         +  +++  ++LS N   G        V  
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS-------VFR 446

Query: 197 IANTNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255
                ++VLDL +N I   +P     L  L+ L + SNQL   +P+ + + +  +Q + L
Sbjct: 447 CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWL 504

Query: 256 SGNGF 260
             N +
Sbjct: 505 HDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 20/191 (10%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           NL+++          +  ++ SL    + N  F+       +    +N   LS++     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
                 +      L+  +N     +    S LK ++ + L  N           N   +A
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK--------NFFKVA 396

Query: 199 N--TNLEVLDLGDNGITGELPS------FGMLPNLKVLRLGSNQLFGMIPEELLESVIPI 250
               N+  L+  D  +   L S           ++ VL L SN L G +   L      +
Sbjct: 397 LMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK---V 452

Query: 251 QELDLSGNGFT 261
           + LDL  N   
Sbjct: 453 KVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.9 bits (132), Expect = 7e-09
 Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 40/168 (23%)

Query: 70  SCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLN 129
           S + ES  V+ S    N T   VP        + L LS N         I++L       
Sbjct: 29  SNELES-MVDYS--NRNLTH--VPK-DLPPRTKALSLSQNS--------ISELR------ 68

Query: 130 LSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGV 189
                       ++  L +L+VL L  N++      +    +++E++D+S NR       
Sbjct: 69  ----------MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ----- 113

Query: 190 GADNVSSIANTNLEVLDLGDNGIT--GELPSFGMLPNLKVLRLGSNQL 235
              N+S     +L  LDL  N          FG L  L  L L + + 
Sbjct: 114 ---NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.5 bits (131), Expect = 9e-09
 Identities = 30/194 (15%), Positives = 54/194 (27%), Gaps = 16/194 (8%)

Query: 79  NLSLSGNNFTGRIVPALGSI---SSLQYLDLSNNKFIGPIPGRITDLWG-----LNYLNL 130
           N++L     T +    L        ++YL++ N      I              L   ++
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 131 SMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVG 190
               F            ++ +  L  +              +  F++ + N F   +  G
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 191 ADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFG---MIPEELLESV 247
              +       L+ L L  NG+        M  N+  L      L        +      
Sbjct: 373 CSTL-----KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427

Query: 248 IPIQELDLSGNGFT 261
             I  L+LS N  T
Sbjct: 428 ESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 52  NITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSI-SSLQYLDLSNNK 110
            + +         + + +          L +S N+          +   S+  L+LS+N 
Sbjct: 388 GLKNFFKVALMTKNMSSLET--------LDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 111 FIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSEL 170
             G +   +     +  L+L  N      P ++ +LQ L+ L++  N+L     G+   L
Sbjct: 440 LTGSVFRCLPPK--VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496

Query: 171 KNVEFVDLSFNRFH 184
            +++++ L  N + 
Sbjct: 497 TSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 35/207 (16%), Positives = 74/207 (35%), Gaps = 13/207 (6%)

Query: 67  TGVSCDPESGSVNLSLSGNNFTGRIVPAL-GSISSLQYLDLSNNKFIGPIPGRITDLW-G 124
             +SC P +   +L LS N+F    V    G+++ L +L LS  KF       +  L   
Sbjct: 113 QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS 172

Query: 125 LNYLNLSMNGFKGGFPGNLR--NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR 182
              L+L     KGG   +L+  N   L ++    +     +   ++ L +++  ++  N 
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 183 FHGG----LGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM 238
            +               ++ N  L+ ++        +L  F     ++ L + +  +   
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV-KLFQFFWPRPVEYLNIYNLTITER 291

Query: 239 IPEELLE----SVIPIQELDLSGNGFT 261
           I  E       ++  +    +    F 
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFL 318

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.5 bits (199), Expect = 8e-18
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 10/186 (5%)

Query: 80  LSLSGNNFTGRIVP--ALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFK 136
           L+L GN +   +        ++ LQ L + N      I  +    L  L  L +  +  +
Sbjct: 129 LNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG----GLGVGAD 192
              P +L+++Q +  L L   +    +   +    +VE ++L            L  G  
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

Query: 193 NVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE 252
           N S I       + + D  +   +     +  L  L    NQL   +P+ + + +  +Q+
Sbjct: 248 N-SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305

Query: 253 LDLSGN 258
           + L  N
Sbjct: 306 IWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 13/197 (6%)

Query: 67  TGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLN 126
             +SC   +G      S  +     +P+ G   +++ LDLSNN+        +     L 
Sbjct: 26  ASLSC-DRNGIC--KGSSGSLNS--IPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQ 79

Query: 127 YLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGG 186
            L L+ NG       +  +L  L+ LDL  N L          L ++ F++L  N +   
Sbjct: 80  ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139

Query: 187 LGVGADNVSSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELL 244
                 +      T L++L +G+     ++    F  L  L+ L + ++ L      + L
Sbjct: 140 GETSLFS----HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-QSYEPKSL 194

Query: 245 ESVIPIQELDLSGNGFT 261
           +S+  +  L L      
Sbjct: 195 KSIQNVSHLILHMKQHI 211

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.1 bits (198), Expect = 9e-18
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           + ++   +N T         +  +  L       +  I G +  L  L  L L  N    
Sbjct: 22  IKIAAGKSNVTD--TVTQADLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQITD 77

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
                L+NL ++  L+L  N L  ++  I + L++++ +DL+  +          +V+ +
Sbjct: 78  --LAPLKNLTKITELELSGNPLK-NVSAI-AGLQSIKTLDLTSTQIT--------DVTPL 125

Query: 198 AN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256
           A  +NL+VL L  N IT  +     L NL+ L +G+ Q+  + P   L ++  +  L   
Sbjct: 126 AGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKAD 181

Query: 257 GNGFT 261
            N  +
Sbjct: 182 DNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L LSGN      V A+  + S++ LDL++ +     P  +  L  L  L L +N     
Sbjct: 89  ELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN- 143

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
               L  L  L+ L +   ++  D+  + + L  +  +    N+          ++S +A
Sbjct: 144 -ISPLAGLTNLQYLSIGNAQV-SDLTPL-ANLSKLTTLKADDNKIS--------DISPLA 192

Query: 199 N-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
           +  NL  + L +N I+ ++       NL ++ L +  +           V+P      SG
Sbjct: 193 SLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

Query: 258 N 258
            
Sbjct: 252 A 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 95  LGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154
             ++++   +    +     +     DL G+  L+    G        ++ L  L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLEL 70

Query: 155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLEVLDLGDNGIT 213
           + N++  D+  +   L  +  ++LS N           NVS+IA   +++ LDL    IT
Sbjct: 71  KDNQI-TDLAPL-KNLTKITELELSGNPL--------KNVSAIAGLQSIKTLDLTSTQIT 120

Query: 214 GELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            ++     L NL+VL L  NQ+  + P   L  +  +Q L +     +
Sbjct: 121 -DVTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 15/121 (12%)

Query: 142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-T 200
               L     +   K+ +  D     ++L  +  +                 +  +    
Sbjct: 14  PDPALANAIKIAAGKSNV-TDTVTQ-ADLDGITTLSAFGTGVT--------TIEGVQYLN 63

Query: 201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
           NL  L+L DN IT +L     L  +  L L  N L  +     L+S   I+ LDL+    
Sbjct: 64  NLIGLELKDNQIT-DLAPLKNLTKITELELSGNPLKNVSAIAGLQS---IKTLDLTSTQI 119

Query: 261 T 261
           T
Sbjct: 120 T 120

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 21/185 (11%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           +  +L   + T         ++S+  +  +N+  I  + G I  L  +  L L+ N    
Sbjct: 27  IKDNLKKKSVTD--AVTQNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTD 82

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
             P  L NL+ L  L L +NK+  D+  +  +LK ++ + L  N           +++ +
Sbjct: 83  IKP--LANLKNLGWLFLDENKVK-DLSSL-KDLKKLKSLSLEHNGIS--------DINGL 130

Query: 198 AN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256
            +   LE L LG+N IT ++     L  L  L L  NQ+  ++P   L  +  +Q L LS
Sbjct: 131 VHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLS 186

Query: 257 GNGFT 261
            N  +
Sbjct: 187 KNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 18/181 (9%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L L+GN  T   +  L ++ +L +L L  NK +  +   + DL  L  L+L  NG    
Sbjct: 72  KLFLNGNKLTD--IKPLANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGISD- 126

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
               L +L QL+ L L  NK+  DI  + S L  ++ + L  N+          ++  +A
Sbjct: 127 -INGLVHLPQLESLYLGNNKI-TDITVL-SRLTKLDTLSLEDNQI--------SDIVPLA 175

Query: 199 N-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
             T L+ L L  N I+ +L +   L NL VL L S +            V+P    +  G
Sbjct: 176 GLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 258 N 258
           +
Sbjct: 235 S 235

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 125 LNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
               NL               L  +  +    + +   + GI   L NV  + L+ N+  
Sbjct: 26  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI-KSVQGI-QYLPNVTKLFLNGNKLT 81

Query: 185 GGLGVGADNVSSIAN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEEL 243
                   ++  +AN  NL  L L +N +  +L S   L  LK L L  N +  +     
Sbjct: 82  --------DIKPLANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNGISDING--- 129

Query: 244 LESVIPIQELDLSGNGFT 261
           L  +  ++ L L  N  T
Sbjct: 130 LVHLPQLESLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-T 200
           +     +    +L+K  +  D     +EL +++ +  + +           +V  I    
Sbjct: 19  SDDAFAETIKDNLKKKSV-TDAVTQ-NELNSIDQIIANNSDIK--------SVQGIQYLP 68

Query: 201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
           N+  L L  N +T ++     L NL  L L  N++  +     L+ +  ++ L L  NG 
Sbjct: 69  NVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNGI 124

Query: 261 T 261
           +
Sbjct: 125 S 125

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L  N  +     A   +  L+ L LS N+ +  +P ++     L  L +  N      
Sbjct: 81  LILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVHENEITKVR 137

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDI--GGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
                 L Q+ V++L  N L       G    +K + ++ ++              +   
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--------TIPQG 189

Query: 198 ANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255
              +L  L L  N IT ++   S   L NL  L L  N +   +    L +   ++EL L
Sbjct: 190 LPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHL 247

Query: 256 SGNGFT 261
           + N   
Sbjct: 248 NNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 25/192 (13%)

Query: 80  LSLSGNNFTGRIVP--ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           + L  N      +   A   +  L Y+ +++   I  IP  +     L  L+L  N    
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITK 206

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH---GGLGVGADNV 194
               +L+ L  L  L L  N +     G ++   ++  + L+ N+     GGL       
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD----- 261

Query: 195 SSIANTNLEVLDLGDNGIT-------GELPSFGMLPNLKVLRLGSNQL-FGMIPEELLES 246
               +  ++V+ L +N I+                 +   + L SN + +  I       
Sbjct: 262 ----HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317

Query: 247 VIPIQELDLSGN 258
           V     + L   
Sbjct: 318 VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 15/165 (9%)

Query: 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159
            L+ +  S+      +P  +        L+L  N       G+ +NL+ L  L L  NK+
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 160 WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-- 217
                G  + L  +E + LS N+           +       L+ L + +N IT ++   
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK--------ELPEKMPKTLQELRVHENEIT-KVRKS 139

Query: 218 SFGMLPNLKVLRLGSNQL-FGMIPEELLESVIPIQELDLSGNGFT 261
            F  L  + V+ LG+N L    I     + +  +  + ++    T
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKF--IGP----IPGRITDLWGLNYLNLSMN 133
           L L+ N    ++   L     +Q + L NN    IG      PG  T     + ++L  N
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 134 GFKGGF--PGNLRNLQQLKVLDLRKNK 158
             +     P   R +     + L   K
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 27/194 (13%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           V L L       +       +S LQ++ +     +  +P  +    GL  L L+ N  + 
Sbjct: 84  VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRA 141

Query: 138 GFPGNLRNLQQLKVLDLRK-NKLW--------GDIGGIMSELKNVEFVDLSFNRFHGGLG 188
             P ++ +L +L+ L +R   +L          D  G    L N++ + L +        
Sbjct: 142 -LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI----- 195

Query: 189 VGADNV-SSIAN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEEL--L 244
               ++ +SIAN  NL+ L + ++ ++   P+   LP L+ L L         P      
Sbjct: 196 ---RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252

Query: 245 ESVIPIQELDLSGN 258
                ++ L L   
Sbjct: 253 AP---LKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 27/193 (13%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP---------GRITDLWGLNYLNL 130
           L+L+ N     +  ++ S++ L+ L +     +  +P         G    L  L  L L
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 131 SMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVG 190
              G +   P ++ NLQ LK L +R + L   +G  +  L  +E +DL            
Sbjct: 191 EWTGIRS-LPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNY--- 245

Query: 191 ADNVSSIAN-TNLEVLDLGD-NGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEEL--LE 245
                       L+ L L D + +   LP     L  L+ L L        +P  +  L 
Sbjct: 246 ---PPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 246 SVIPIQELDLSGN 258
           +      + +  +
Sbjct: 302 A---NCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 23/166 (13%)

Query: 99  SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158
           S  + L    +  + P    ++        + +             N    ++       
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRA 67

Query: 159 LWGDIGGI-MSELKNVEFVDLSFNRFHGGLGVGADNV-SSIAN-TNLEVLDLGDNGITGE 215
           L      +  +       ++L                       ++L+ + +   G+  E
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLP--------QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 216 LP-SFGMLPNLKVLRLGSNQLFGMIPEEL--LESVIPIQELDLSGN 258
           LP +      L+ L L  N L   +P  +  L     ++EL +   
Sbjct: 119 LPDTMQQFAGLETLTLARNPL-RALPASIASLNR---LRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 32/199 (16%), Positives = 52/199 (26%), Gaps = 34/199 (17%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           NL   G+         L         D +          R  +         +    K  
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK-A 70

Query: 139 FPGNLRNLQQ--LKVLDLRKNKL---WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADN 193
               L +  Q     L+LR   L             L +++ + +               
Sbjct: 71  TADLLEDATQPGRVALELRSVPLPQFPDQAF----RLSHLQHMTIDAAGLM--------E 118

Query: 194 V-SSIAN-TNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPI 250
           +  ++     LE L L  N +   LP S   L  L+ L + +      +PE L  +    
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 251 --------QELDLSGNGFT 261
                   Q L L   G  
Sbjct: 178 EHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 16/80 (20%), Positives = 27/80 (33%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L G        P  G  + L+ L L +   +  +P  I  L  L  L+L         
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 140 PGNLRNLQQLKVLDLRKNKL 159
           P  +  L    ++ +  +  
Sbjct: 294 PSLIAQLPANCIILVPPHLQ 313

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.8 bits (196), Expect = 3e-17
 Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 43/182 (23%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           +  +L   + T         ++S+  +  +N+         I  + G+ YL         
Sbjct: 24  IKDNLKKKSVTD--AVTQNELNSIDQIIANNSD--------IKSVQGIQYL--------- 64

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
                      +  L L  NKL  DI  + + LKN+ ++ L  N+          ++SS+
Sbjct: 65  ---------PNVTKLFLNGNKL-TDIKPL-TNLKNLGWLFLDENKIK--------DLSSL 105

Query: 198 AN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256
            +   L+ L L  NGI+ ++     LP L+ L LG+N++  +     L  +  +  L L 
Sbjct: 106 KDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLE 161

Query: 257 GN 258
            N
Sbjct: 162 DN 163

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 9e-13
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-T 200
                 +    +L+K  +  D     +EL +++ +  + +           +V  I    
Sbjct: 16  PDDAFAETIKDNLKKKSV-TDAVTQ-NELNSIDQIIANNSDIK--------SVQGIQYLP 65

Query: 201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
           N+  L L  N +T ++     L NL  L L  N++  +   + L+    ++ L L  NG 
Sbjct: 66  NVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK---LKSLSLEHNGI 121

Query: 261 T 261
           +
Sbjct: 122 S 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.5 bits (159), Expect = 2e-12
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 18/159 (11%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L  N      + +L  +  L+ L L +N  I  I G +  L  L  L L  N      
Sbjct: 92  LFLDENKIK--DLSSLKDLKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNKITD-- 145

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
              L  L +L  L L  N++  DI  + + L  ++ + LS N           ++ ++A 
Sbjct: 146 ITVLSRLTKLDTLSLEDNQI-SDIVPL-AGLTKLQNLYLSKNHI--------SDLRALAG 195

Query: 200 -TNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLF 236
             NL+VL+L       +  +    L     ++     L 
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.5 bits (196), Expect = 4e-17
 Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 11/182 (6%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK--G 137
            + + +      +     IS   +LD SNN     +      L  L  L L MN  K   
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 138 GFPGNLRNLQQLKVLDLRKNKL-WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
                   ++ L+ LD+ +N + + +  G  S  K++  +++S N          D +  
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL-------TDTIFR 417

Query: 197 IANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256
                ++VLDL  N I         L  L+ L + SNQL   +P+ + + +  +Q++ L 
Sbjct: 418 CLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLH 476

Query: 257 GN 258
            N
Sbjct: 477 TN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 44/253 (17%), Positives = 80/253 (31%), Gaps = 24/253 (9%)

Query: 16  HLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPES 75
            +L          + + ++    + +  L  I +TWN            +    S     
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS--- 255

Query: 76  GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGF 135
              N+ L G         +  S+ +L    + ++ F  P          +N  N +++G 
Sbjct: 256 ---NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 136 KGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVS 195
           +         +     LD   N L   +      L  +E + L  N+           +S
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK--------ELS 364

Query: 196 SIAN-----TNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVI 248
            IA       +L+ LD+  N ++ +          +L  L + SN L   I   L     
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR-- 422

Query: 249 PIQELDLSGNGFT 261
            I+ LDL  N   
Sbjct: 423 -IKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 35/158 (22%), Positives = 48/158 (30%), Gaps = 37/158 (23%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           +  S N      VP          L++S N         I  L  L  L +S N  +   
Sbjct: 5   VDRSKNGLIH--VPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
               +  Q+L+ LDL  NKL                  +S +                  
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVK----------------ISCHPT---------------- 89

Query: 200 TNLEVLDLGDNGIT--GELPSFGMLPNLKVLRLGSNQL 235
            NL+ LDL  N          FG +  LK L L +  L
Sbjct: 90  VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.0 bits (140), Expect = 7e-10
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 14/185 (7%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L++S N  +      + S+S L+ L +S+N+              L YL+LS N     
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-K 83

Query: 139 FPGNLRNLQQLKVLDLRKNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
                     LK LDL  N      I      +  ++F+ LS             +V  I
Sbjct: 84  IS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS------SVLPI 135

Query: 198 ANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL----FGMIPEELLESVIPIQEL 253
           A+ N+  + L      GE      L +     L         F  I +  +++V  ++  
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 254 DLSGN 258
           ++   
Sbjct: 196 NIKCV 200

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 80  LSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           L +S N+ +            SL  L++S+N     I   +     +  L+L  N  K  
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKS- 435

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
            P  +  L+ L+ L++  N+L     GI   L +++ + L  N + 
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 200 TNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
           + L +L +  N I   L    F     L+ L L  N+L   I      +   ++ LDLS 
Sbjct: 45  SKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKISCHPTVN---LKHLDLSF 99

Query: 258 NGFT 261
           N F 
Sbjct: 100 NAFD 103

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 12/138 (8%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           +L+++  + T      +  +S+L+ L +            ++ L  L  L++S +     
Sbjct: 70  DLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
               +  L ++  +DL  N    DI  +   L  ++ +++ F+           +   I 
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGV--------HDYRGIE 178

Query: 199 N-TNLEVLDLGDNGITGE 215
           +   L  L      I G+
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 34/185 (18%), Positives = 67/185 (36%), Gaps = 17/185 (9%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           +N  L G + T  I  A   ++SL Y+ L+N   +  + G I     +  L ++      
Sbjct: 26  LNGLL-GQSSTANITEA--QMNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATN 80

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
                +  L  L+ L +    +  D    +S L ++  +D+S +            ++ I
Sbjct: 81  --YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA------HDDSILTKI 132

Query: 198 AN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256
                +  +DL  NG   ++     LP LK L +  + +        +E    + +L   
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAF 189

Query: 257 GNGFT 261
                
Sbjct: 190 SQTIG 194

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 21/186 (11%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKGG 138
           ++   +         L S   ++ L+L++ + I  I          +  L +  N  +  
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYL 108

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRF---HGGLGVGADNVS 195
            P   +N+  L VL L +N L     GI      +  + +S N                 
Sbjct: 109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA----- 163

Query: 196 SIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255
               T+L+ L L  N +T  +    ++P+L    +  N L        L   I ++ELD 
Sbjct: 164 ---TTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLL------STLAIPIAVEELDA 212

Query: 256 SGNGFT 261
           S N   
Sbjct: 213 SHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.1 bits (185), Expect = 9e-16
 Identities = 24/191 (12%), Positives = 61/191 (31%), Gaps = 24/191 (12%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           ++ +              ++++ + +   N+         +     +  LNL+    +  
Sbjct: 25  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 84

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
                     ++ L +  N +      +   +  +  + L  N             SS+ 
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-----------SSLP 133

Query: 199 ------NTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPI 250
                    L  L + +N +   +    F    +L+ L+L SN+L   +   L+ S+   
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSL--- 188

Query: 251 QELDLSGNGFT 261
              ++S N  +
Sbjct: 189 FHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 34/159 (21%), Positives = 52/159 (32%), Gaps = 20/159 (12%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L  S N+    +V        L  L L +N         + +  GL  ++LS N  +   
Sbjct: 210 LDASHNSIN--VVRG-PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 264

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR---FHGGLGVGADNVSS 196
                 +Q+L+ L +  N+L   +      +  ++ +DLS N                  
Sbjct: 265 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQP-------- 315

Query: 197 IANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL 235
                LE L L  N I   L        LK L L  N  
Sbjct: 316 -QFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 45/204 (22%), Positives = 71/204 (34%), Gaps = 40/204 (19%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG-G 138
           LS+S NN          + +SLQ L LS+N+ +  +   ++ +  L + N+S N      
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLA 202

Query: 139 FPGNLRNL---------------QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRF 183
            P  +  L                +L +L L+ N L  D   +      +  VDLS+N  
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TDTAWL-LNYPGLVEVDLSYNEL 260

Query: 184 HGGLGVGADNVSSIAN------TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFG 237
                        I          LE L + +N +         +P LKVL L  N L  
Sbjct: 261 -----------EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-L 308

Query: 238 MIPEELLESVIPIQELDLSGNGFT 261
            +          ++ L L  N   
Sbjct: 309 HVERNQP-QFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 15/152 (9%)

Query: 115 IPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174
           I   +        +++ M      F      L   K++  + + +      ++   + VE
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 175 FVDLSFNRFHGGLGVGADNVSSIA---NTNLEVLDLGDNGITGELPS--FGMLPNLKVLR 229
            ++L+  +           + + A      ++ L +G N I   LP   F  +P L VL 
Sbjct: 73  LLNLNDLQIE--------EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123

Query: 230 LGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           L  N L   +P  +  +   +  L +S N   
Sbjct: 124 LERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE 154

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.1 bits (187), Expect = 5e-16
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 21/186 (11%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKGG 138
           ++   +         L S   ++ L+L++ + I  I          +  L +  N  +  
Sbjct: 56  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYL 114

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR---FHGGLGVGADNVS 195
            P   +N+  L VL L +N L     GI      +  + +S N                 
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA----- 169

Query: 196 SIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255
               T+L+ L L  N +T  +    ++P+L    +  N L        L   I ++ELD 
Sbjct: 170 ---TTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLL------STLAIPIAVEELDA 218

Query: 256 SGNGFT 261
           S N   
Sbjct: 219 SHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.0 bits (184), Expect = 1e-15
 Identities = 23/204 (11%), Positives = 62/204 (30%), Gaps = 23/204 (11%)

Query: 68  GVSCDPESGSVNLSLSGNNFTGRIV-----PALGSISSLQYLDLSNNKFIGPIPGRITDL 122
              C   +   +      +   +           ++++ + +   N+         +   
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74

Query: 123 WGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR 182
             +  LNL+    +            ++ L +  N +      +   +  +  + L  N 
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 183 FHGGLGVGADNVSSIA---NTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFG 237
                     ++          L  L + +N +   +    F    +L+ L+L SN+L  
Sbjct: 135 LS--------SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL-T 184

Query: 238 MIPEELLESVIPIQELDLSGNGFT 261
            +   L+ S+      ++S N  +
Sbjct: 185 HVDLSLIPSL---FHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.1 bits (174), Expect = 3e-14
 Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 14/156 (8%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L  S N+    +V        L  L L +N  +      + +  GL  ++LS N  +   
Sbjct: 216 LDASHNSIN--VVRG-PVNVELTILKLQHNN-LTDTAW-LLNYPGLVEVDLSYNELEKIM 270

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
                 +Q+L+ L +  N+L   +      +  ++ +DLS N     +            
Sbjct: 271 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQ-----F 323

Query: 200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL 235
             LE L L  N I   L        LK L L  N  
Sbjct: 324 DRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.0 bits (171), Expect = 6e-14
 Identities = 43/189 (22%), Positives = 60/189 (31%), Gaps = 32/189 (16%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           NL LS N  T   V  L  I SL + ++S N         +     +  L+ S N     
Sbjct: 175 NLQLSSNRLTH--VD-LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVV 226

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
                  L  L    L+ N L  D   +      +  VDLS+N               I 
Sbjct: 227 RGPVNVELTIL---KLQHNNL-TDTAWL-LNYPGLVEVDLSYNEL-----------EKIM 270

Query: 199 N------TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE 252
                    LE L + +N +         +P LKVL L  N L   +          ++ 
Sbjct: 271 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQP-QFDRLEN 328

Query: 253 LDLSGNGFT 261
           L L  N   
Sbjct: 329 LYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 15/163 (9%)

Query: 101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLW 160
            +Y           I   +        +++ M      F      L   K++  + + + 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 161 GDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA---NTNLEVLDLGDNGITGELP 217
                ++   + VE ++L+  +           + + A      ++ L +G N I   LP
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIE--------EIDTYAFAYAHTIQKLYMGFNAIR-YLP 115

Query: 218 S--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
              F  +P L VL L  N L   +P  +  +   +  L +S N
Sbjct: 116 PHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNN 157

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.7 bits (186), Expect = 8e-16
 Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 36/190 (18%)

Query: 74  ESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMN 133
            +G+  L++  +  T  +   L +   +  L + +N  +  +P        L  L +S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNN-LTSLPALPP---ELRTLEVSGN 91

Query: 134 GFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADN 193
                 P     L +L +       L        +    +  + +  N+           
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLTHL-------PALPSGLCKLWIFGNQL---------- 133

Query: 194 VSSIAN--TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQ 251
            +S+      L+ L + DN +   LP+  +   L  L   +NQL       L      +Q
Sbjct: 134 -TSLPVLPPGLQELSVSDNQLA-SLPA--LPSELCKLWAYNNQL-----TSLPMLPSGLQ 184

Query: 252 ELDLSGNGFT 261
           EL +S N   
Sbjct: 185 ELSVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 12/159 (7%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L +SGN  T   +P     S L+ L +S N+ +  +P   +   GL  L++  N      
Sbjct: 226 LIVSGNRLTS--LPV--LPSELKELMVSGNR-LTSLPMLPS---GLLSLSVYRNQLTR-L 276

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
           P +L +L     ++L  N L       + E+ +         RF            ++  
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

Query: 200 TNLEVLD---LGDNGITGELPSFGMLPNLKVLRLGSNQL 235
              + L     G+         FG   N     L  ++L
Sbjct: 337 AAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 51/161 (31%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
             LS+S N      +P     S L  L   NN        R+T L               
Sbjct: 184 QELSVSDNQLA--SLPT--LPSELYKLWAYNN--------RLTSL--------------- 216

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
             P     L++   L +  N+L   +  + SELK    + +S NR            +S+
Sbjct: 217 --PALPSGLKE---LIVSGNRL-TSLPVLPSELKE---LMVSGNRL-----------TSL 256

Query: 198 AN--TNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQL 235
               + L  L +  N +T  LP S   L +   + L  N L
Sbjct: 257 PMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 27/206 (13%)

Query: 80  LSLSGNNFTGRIVP--ALGSISSLQYLDLSNNKF----------IGPIPGRITDLWGLNY 127
           L L  NN   +I P     ++     LDL+ NK                  +  L  +  
Sbjct: 134 LVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192

Query: 128 LNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDI-GGIMSELKNVEFVDLSFNRFHGG 186
            +++         GN      +  LDL  N     +       +   +   L  +  +  
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 187 LGVGADNV---------SSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQL 235
                              +  + ++  DL  + I   L    F    +L+ L L  N++
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI 311

Query: 236 FGMIPEELLESVIPIQELDLSGNGFT 261
              I +     +  + +L+LS N   
Sbjct: 312 -NKIDDNAFWGLTHLLKLNLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 46/197 (23%), Positives = 62/197 (31%), Gaps = 19/197 (9%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNGFKG 137
            + LS N+       +   +  LQ+L +        I       L  L  L L  N F  
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDI--GGIMSELKNVEFVDLSFNRFHGGLGVGADNVS 195
              G    L  L+VL L +  L G +  G     L ++E + L  N              
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL-- 151

Query: 196 SIANTNLEVLDLGDNGITGELPS--FGMLP--NLKVLRLGSNQL-------FGMIPEELL 244
                   VLDL  N +   +           +  +LRL S  L        G       
Sbjct: 152 --NMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 245 ESVIPIQELDLSGNGFT 261
                I  LDLSGNGF 
Sbjct: 209 FKNTSITTLDLSGNGFK 225

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 47/211 (22%), Positives = 75/211 (35%), Gaps = 41/211 (19%)

Query: 51  WNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNK 110
           ++  +    +S  +S +         +         F G         S ++  DLS +K
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL------EASGVKTCDLSKSK 286

Query: 111 FIGPIPGRI-TDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSE 169
            I  +   + +    L  L L+ N            L  L  L+L +N L          
Sbjct: 287 -IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL--------GS 337

Query: 170 LKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP--SFGMLPNLKV 227
           + +  F +L                       LEVLDL  N I   L   SF  LPNLK 
Sbjct: 338 IDSRMFENL---------------------DKLEVLDLSYNHIR-ALGDQSFLGLPNLKE 375

Query: 228 LRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
           L L +NQL   +P+ + + +  +Q++ L  N
Sbjct: 376 LALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 9e-12
 Identities = 41/196 (20%), Positives = 61/196 (31%), Gaps = 39/196 (19%)

Query: 70  SCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLN 129
            C     +              VP L   + + Y+DLS N          + L  L +L 
Sbjct: 7   ECSVIGYNAICI--NRGLHQ--VPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLK 60

Query: 130 LSMNGFKGGFPGNL-RNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG 188
           +           N  R L  L +L L  N+          +L+   F  L          
Sbjct: 61  VEQQTPGLVIRNNTFRGLSSLIILKLDYNQF--------LQLETGAFNGL---------- 102

Query: 189 VGADNVSSIANTNLEVLDLGDNGITG-ELP--SFGMLPNLKVLRLGSNQLFGMIPEELLE 245
                       NLEVL L    + G  L    F  L +L++L L  N +  + P     
Sbjct: 103 -----------ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 246 SVIPIQELDLSGNGFT 261
           ++     LDL+ N   
Sbjct: 152 NMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 38/161 (23%)

Query: 80  LSLSGNNFTGRIVP--ALGSISSLQYLDLSNNKFIGPIPGRITD-LWGLNYLNLSMNGFK 136
             LS +      +        + L+ L L+ N+ I  I       L  L  LNLS N   
Sbjct: 280 CDLSKSKIF--ALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
                   NL +L+VLDL  N +          L +  F+ L                  
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHI--------RALGDQSFLGL------------------ 370

Query: 197 IANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQL 235
               NL+ L L  N +   +P   F  L +L+ + L +N  
Sbjct: 371 ---PNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 18/164 (10%)

Query: 95  LGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154
              +++    +L     +  +     +L G+   N   +  +      ++    LK L L
Sbjct: 15  DPGLANAVKQNLGKQS-VTDLVS-QKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHL 70

Query: 155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITG 214
             N++  D+  +  +L  +E + ++ NR          N++ I +  L  L L +N +  
Sbjct: 71  SHNQI-SDLSPL-KDLTKLEELSVNRNRLK--------NLNGIPSACLSRLFLDNNELR- 119

Query: 215 ELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
           +  S   L NL++L + +N+L  ++    L     ++ LDL GN
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSK---LEVLDLHGN 160

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.8 bits (161), Expect = 7e-13
 Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 23/183 (12%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           N +   +N     +  +   ++L+ L LS+N+ I  +   + DL  L  L+++ N  K  
Sbjct: 45  NFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRLK-- 98

Query: 139 FPGNLRNLQ--QLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
              NL  +    L  L L  N+L  D   +   LKN+E + +  N+          ++  
Sbjct: 99  ---NLNGIPSACLSRLFLDNNEL-RDTDSL-IHLKNLEILSIRNNKL--------KSIVM 145

Query: 197 IAN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255
           +   + LEVLDL  N IT        L  +  + L   +      +   E  I     D 
Sbjct: 146 LGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDP 204

Query: 256 SGN 258
            G 
Sbjct: 205 DGR 207

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.2 bits (175), Expect = 9e-15
 Identities = 56/209 (26%), Positives = 83/209 (39%), Gaps = 31/209 (14%)

Query: 59  TKSCPVSWTGV-SCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPG 117
            K       GV SC+    SV+ S      T   +P+    +  + LDL +NK       
Sbjct: 5   CKKDG----GVCSCNNNKNSVDCS--SKKLTA--IPS-NIPADTKKLDLQSNKLSSLPSK 55

Query: 118 RITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVD 177
               L  L  L L+ N  +    G  + L+ L+ L +  NKL     G+  +L N+  + 
Sbjct: 56  AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115

Query: 178 LSFNRFHGGLGVGADNVSSIAN------TNLEVLDLGDNGITGELPS--FGMLPNLKVLR 229
           L  N+             S+        T L  L LG N +   LP   F  L +LK LR
Sbjct: 116 LDRNQL-----------KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELR 163

Query: 230 LGSNQLFGMIPEELLESVIPIQELDLSGN 258
           L +NQL   +PE   + +  ++ L L  N
Sbjct: 164 LYNNQL-KRVPEGAFDKLTELKTLKLDNN 191

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 80  LSLSGNNFTGRIVP--ALGSISSLQYLDLSNNKFIGPIPGRITD-LWGLNYLNLSMNGFK 136
           L L  N      +P     S++ L YL L  N+ +  +P  + D L  L  L L  N  K
Sbjct: 114 LRLDRNQLKS--LPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK 170

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN 181
               G    L +LK L L  N+L     G    L+ ++ + L  N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 62/233 (26%)

Query: 78  VNLSLSGNNFTGR----IVPALGSISSLQYLDLSNNKFIGPIPGRI-------------- 119
             + LS N F       ++  L   + L++L L NN  +GP  G                
Sbjct: 97  HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKA 155

Query: 120 TDLWGLNYLNLSMNGFKGGFPGN---------LRNLQQLKVLDLRKNKLWGDIGGI---- 166
            +   L  +    N        N          ++ + L  + + +N +    G      
Sbjct: 156 KNAPPLRSIICGRNRL-----ENGSMKEWAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLL 209

Query: 167 --MSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-----NTNLEVLDLGDNGIT------ 213
             ++  + ++ +DL  N F           S++A       NL  L L D  ++      
Sbjct: 210 EGLAYCQELKVLDLQDNTF------THLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263

Query: 214 -GELPSFGMLPNLKVLRLGSNQL----FGMIPEELLESVIPIQELDLSGNGFT 261
             +  S      L+ LRL  N++       +   + E +  +  L+L+GN F+
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 40/223 (17%), Positives = 66/223 (29%), Gaps = 41/223 (18%)

Query: 79  NLSLSGNNFTGR----IVPALGSISSLQYLDLSNNKF-------IGPIPGRITDLWGLNY 127
             SL  +  T      +   L    S++ + LS N         +        DL    +
Sbjct: 8   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 67

Query: 128 LNLSMNGFKGGFPGN-------LRNLQQLKVLDLRKNKLWGDIGGI-----MSELKNVEF 175
            ++     K   P         L    +L  + L  N   G          +S+   +E 
Sbjct: 68  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEH 126

Query: 176 VDLSFNRF--HGG------LGVGADNVSSIANTNLEVLDLGDNGITGE-----LPSFGML 222
           + L  N      G      L   A N  +     L  +  G N +          +F   
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186

Query: 223 PNLKVLRLGSNQL--FGMIP--EELLESVIPIQELDLSGNGFT 261
             L  +++  N +   G+     E L     ++ LDL  N FT
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 45/233 (19%), Positives = 72/233 (30%), Gaps = 59/233 (25%)

Query: 79  NLSLSGNNFTGR-----------IVPALGSISSLQYLDLSNNKFIGPIPGR-----ITDL 122
               S + FTGR           ++ AL     L  + LS+N   GP         ++  
Sbjct: 64  IAEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKH 121

Query: 123 WGLNYLNLSMNGF-------------KGGFPGNLRNLQQLKVLDLRKNKLWGDIGGI--- 166
             L +L L  NG              +       +N   L+ +   +N+L  +       
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWA 180

Query: 167 --MSELKNVEFVDLSFNRFHGGLGVGADNVSSIA---NTNLEVLDLGDNGITGE------ 215
                 + +  V +  N        G +++          L+VLDL DN  T        
Sbjct: 181 KTFQSHRLLHTVKMVQNGIR---PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 216 --LPSFGMLPNLKVLRLGSNQL----FGMIPEELLESVIP-IQELDLSGNGFT 261
             L S    PNL+ L L    L       + +   +     +Q L L  N   
Sbjct: 238 IALKS---WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 30/207 (14%), Positives = 62/207 (29%), Gaps = 50/207 (24%)

Query: 97  SISSLQYLDLSNNKF----IGPIPGRITDLWGLNYLNLSMNGFKGGFPG------NLRNL 146
           +  S++   L  +         +   + +   +  + LS N    G         N+ + 
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--GTEAARWLSENIASK 59

Query: 147 QQLKVLDLRKNKLWGD----------IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
           + L++ +                   +   + +   +  V LS N F      G      
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF------GPTAQEP 113

Query: 197 IA-----NTNLEVLDLGDNGITGE--------------LPSFGMLPNLKVLRLGSNQL-- 235
           +      +T LE L L +NG+  +                     P L+ +  G N+L  
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173

Query: 236 FGMIP-EELLESVIPIQELDLSGNGFT 261
             M    +  +S   +  + +  NG  
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIR 200

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.4 bits (172), Expect = 6e-14
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 37/186 (19%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L ++ N      +P     +SL+YLD  +N+ +  +P        L +L++  N      
Sbjct: 85  LEITQNALI--SLPE--LPASLEYLDACDNR-LSTLPELPA---SLKHLDVDNNQLT-ML 135

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
           P        L+ ++   N+L      +     ++E + +  N+            + +  
Sbjct: 136 P---ELPALLEYINADNNQL----TMLPELPTSLEVLSVRNNQL-----------TFLPE 177

Query: 200 --TNLEVLDLGDNGITGELP-SFGMLPNLK----VLRLGSNQLFGMIPEELLESVIPIQE 252
              +LE LD+  N +   LP       + +      R   N++   IPE +L    P   
Sbjct: 178 LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLD-PTCT 234

Query: 253 LDLSGN 258
           + L  N
Sbjct: 235 IILEDN 240

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.8 bits (160), Expect = 2e-12
 Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 30/195 (15%)

Query: 79  NLSLSGNNFTGRI-VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
             +L G N    + +     I+    L L+    +  +P  +     +  L ++ N    
Sbjct: 38  KQALPGENRNEAVSLLKECLINQFSELQLNRLN-LSSLPDNLPP--QITVLEITQNALI- 93

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG---------GLG 188
             P    +L+ L   D R + L       +  L      D+  N+             + 
Sbjct: 94  SLPELPASLEYLDACDNRLSTLPELPAS-LKHL------DVDNNQLTMLPELPALLEYIN 146

Query: 189 VGADNVSSIAN--TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEE---L 243
              + ++ +    T+LEVL + +N +T  LP      +L+ L + +N L   +P      
Sbjct: 147 ADNNQLTMLPELPTSLEVLSVRNNQLT-FLPEL--PESLEALDVSTNLL-ESLPAVPVRN 202

Query: 244 LESVIPIQELDLSGN 258
             S           N
Sbjct: 203 HHSEETEIFFRCREN 217

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.1 bits (140), Expect = 6e-10
 Identities = 30/175 (17%), Positives = 53/175 (30%), Gaps = 33/175 (18%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
            +L +  N  T  ++P L   + L+Y++  NN+ +  +P   T    L  L++  N    
Sbjct: 123 KHLDVDNNQLT--MLPEL--PALLEYINADNNQ-LTMLPELPT---SLEVLSVRNNQLTF 174

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWG---DIGGIMSELKNVEFVDLSFNRFH------GGLG 188
             P    +L+ L   D+  N L              +   F     NR          L 
Sbjct: 175 -LPELPESLEAL---DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL- 229

Query: 189 VGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEEL 243
                           + L DN ++  +         +    G    F M   + 
Sbjct: 230 -----------DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.9 bits (124), Expect = 7e-08
 Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 18/124 (14%)

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
            +       ++  +    +N+    +   +  +     + L+             ++   
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL--------SSLPDN 77

Query: 198 ANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
               + VL++  N +   LP   +  +L+ L    N+L       L E    ++ LD+  
Sbjct: 78  LPPQITVLEITQNALI-SLPE--LPASLEYLDACDNRL-----STLPELPASLKHLDVDN 129

Query: 258 NGFT 261
           N  T
Sbjct: 130 NQLT 133

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 13/188 (6%)

Query: 80  LSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLS-MNGFK 136
           L          I   A      L+ +++S N  +  I   + ++L  L+ + +   N   
Sbjct: 35  LRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGA-DNVS 195
              P   +NL  L+ L +    +                +D+  N     +   +   +S
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 196 SIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL 253
                   +L L  NGI  E+ +  F      ++    +N L   +P ++         L
Sbjct: 154 F----ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVIL 207

Query: 254 DLSGNGFT 261
           D+S     
Sbjct: 208 DISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 31/158 (19%), Positives = 49/158 (31%), Gaps = 14/158 (8%)

Query: 80  LSLSGNNFTGRIVPALGSISS--LQYLDLSNNKFIGPIPGR-ITDL-WGLNYLNLSMNGF 135
           L +S        +P +  I S     LD+ +N  I  I       L +    L L+ NG 
Sbjct: 109 LLISNTGIK--HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 136 KGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVS 195
           +          Q  ++     N L      +         +D+S  R H        ++ 
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--------SLP 218

Query: 196 SIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSN 233
           S    NL+ L         +LP+   L  L    L   
Sbjct: 219 SYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 15/132 (11%)

Query: 52  NITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKF 111
           NI ++                    SV L L+ N        A       +     NN  
Sbjct: 140 NIHTIER---------NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN- 189

Query: 112 IGPIPGRI-TDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSEL 170
           +  +P  +     G   L++S           L NL++L+       K    +     +L
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL----EKL 245

Query: 171 KNVEFVDLSFNR 182
             +    L++  
Sbjct: 246 VALMEASLTYPS 257

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 29/183 (15%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            ++   N      +P L ++  L  +   NN  +  +P        L  +    N  +  
Sbjct: 177 FIAAGNNQLE--ELPELQNLPFLTAIYADNNS-LKKLPDLPL---SLESIVAGNNILE-- 228

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
               L+NL  L  +    N L   +  +   L+ +   D                     
Sbjct: 229 ELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDLPELPQ---------- 277

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
             +L  LD+ +N  +  L      PNL  L   SN++       L +    ++EL++S N
Sbjct: 278 --SLTFLDVSENIFS-GLSEL--PPNLYYLNASSNEI-----RSLCDLPPSLEELNVSNN 327

Query: 259 GFT 261
              
Sbjct: 328 KLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 27/195 (13%), Positives = 60/195 (30%), Gaps = 37/195 (18%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLW-------------GLN 126
                +N T  +     ++ S      + +++    P    +                 +
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 127 YLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGG 186
            L L+  G     P    +L+    L    N L  ++  +   LK++   + +       
Sbjct: 75  ELELNNLGLSS-LPELPPHLE---SLVASCNSL-TELPELPQSLKSLLVDNNNLKAL--- 126

Query: 187 LGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLES 246
                    S     LE L + +N +  +LP       LK++ + +N L   +P+     
Sbjct: 127 ---------SDLPPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSL-KKLPDLPPS- 174

Query: 247 VIPIQELDLSGNGFT 261
              ++ +    N   
Sbjct: 175 ---LEFIAAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 36/217 (16%), Positives = 65/217 (29%), Gaps = 60/217 (27%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           ++    N      +P L ++  L  +   NN  +  +P     L  LN  +  +      
Sbjct: 219 SIVAGNNILE--ELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLPE- 274

Query: 139 FPGNLRNLQ--------------QLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
            P +L  L                L  L+   N+    I  +     ++E +++S N+  
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE----IRSLCDLPPSLEELNVSNNKL- 329

Query: 185 GGLGVGADNVSSI--ANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL------- 235
                       +      LE L    N +  E+P      NLK L +  N L       
Sbjct: 330 ----------IELPALPPRLERLIASFNHLA-EVPEL--PQNLKQLHVEYNPLREFPDIP 376

Query: 236 -----------FGMIPEELLESVIPIQELDLSGNGFT 261
                         +PE        +++L +  N   
Sbjct: 377 ESVEDLRMNSHLAEVPELPQN----LKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 33/195 (16%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L +S N      +P L + S L+ +D+ NN  +  +P     L    ++    N  +   
Sbjct: 136 LGVSNNQLEK--LPELQNSSFLKIIDVDNNS-LKKLPDLPPSL---EFIAAGNNQLEE-L 188

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG-----------GLG 188
           P  L+NL  L  +    N L      +     ++E +    N                + 
Sbjct: 189 P-ELQNLPFLTAIYADNNSL----KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 243

Query: 189 VGADNVSSIAN--TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLES 246
              + + ++ +   +LE L++ DN +T        L  L V     + L  + P      
Sbjct: 244 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN----- 298

Query: 247 VIPIQELDLSGNGFT 261
              +  L+ S N   
Sbjct: 299 ---LYYLNASSNEIR 310

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 29/174 (16%), Positives = 55/174 (31%), Gaps = 35/174 (20%)

Query: 91  IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLK 150
           I P   S + LQ     ++  +  +P    ++        + + ++   P      +++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 151 VLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN--TNLEVLDLG 208
           V  LR               +    ++L+               SS+     +LE L   
Sbjct: 62  VSRLRDCL-----------DRQAHELELNNLGL-----------SSLPELPPHLESLVAS 99

Query: 209 DNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            N +T ELP     L +L V       L  + P         ++ L +S N   
Sbjct: 100 CNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE 144

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 30/180 (16%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L+ S N              SL+ L++SNNK I  +P        L  L  S N     
Sbjct: 301 YLNASSNEIRSLC----DLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHLA-E 351

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
            P   +N   LK L +  N L  +   I   ++++  ++                     
Sbjct: 352 VPELPQN---LKQLHVEYNPL-REFPDIPESVEDLR-MNSHLAEVPELPQ---------- 396

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
             NL+ L +  N +  E P      +++ LR+ S ++     E   E+   +++     +
Sbjct: 397 --NLKQLHVETNPLR-EFPDI--PESVEDLRMNSERVVD-PYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 21/159 (13%), Positives = 50/159 (31%), Gaps = 31/159 (19%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L++S N      +PA      L+ L  S N  +  +P        L  L++  N  +  F
Sbjct: 322 LNVSNNKLI--ELPA--LPPRLERLIASFNH-LAEVPELPQ---NLKQLHVEYNPLR-EF 372

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
           P    +++ L++           +  +    +N++ + +  N                 +
Sbjct: 373 PDIPESVEDLRMNSH--------LAEVPELPQNLKQLHVETNPL-----------REFPD 413

Query: 200 --TNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQL 235
              ++E L +    +      +      L+      +  
Sbjct: 414 IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.7 bits (163), Expect = 4e-13
 Identities = 48/188 (25%), Positives = 71/188 (37%), Gaps = 25/188 (13%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L LS N      +  L   + L  L+L   + +  +      L  L  L+LS N  +  
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSHNQLQ-S 91

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
            P   + L  L VLD+  N+L     G +  L  ++ + L  N              ++ 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-----------KTLP 140

Query: 199 N------TNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPI 250
                    LE L L +N +T ELP+     L NL  L L  N L   IP+    S + +
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHL-L 197

Query: 251 QELDLSGN 258
               L GN
Sbjct: 198 PFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 48/192 (25%), Positives = 65/192 (33%), Gaps = 19/192 (9%)

Query: 70  SCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLN 129
           S       VN      N T   +P          L LS N         +     L  LN
Sbjct: 7   SKVASHLEVNCD--KRNLTA--LPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 130 LSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGV 189
           L               L  L  LDL  N+L   +  +   L  +  +D+SFNR    L +
Sbjct: 62  LDRAELTKLQVDG--TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPL 117

Query: 190 GA-DNVSSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLES 246
           GA   +       L+ L L  N +   LP       P L+ L L +N L   +P  LL  
Sbjct: 118 GALRGL-----GELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNG 170

Query: 247 VIPIQELDLSGN 258
           +  +  L L  N
Sbjct: 171 LENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 36/165 (21%), Positives = 56/165 (33%), Gaps = 39/165 (23%)

Query: 99  SSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157
           +S   ++      +  +P  +  D      L+LS N         L    +L  L+L + 
Sbjct: 10  ASHLEVNCDKRN-LTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP 217
           +L        ++L+      L                       L  LDL  N +   LP
Sbjct: 66  EL--------TKLQ--VDGTL---------------------PVLGTLDLSHNQLQ-SLP 93

Query: 218 S-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
                LP L VL +  N+L   +P   L  +  +QEL L GN   
Sbjct: 94  LLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELK 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 39/204 (19%), Positives = 60/204 (29%), Gaps = 48/204 (23%)

Query: 61  SCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSI-SSLQYLDLSNNKFIGPIPGRI 119
              V      C              NF    +P   ++  S + LDLS N          
Sbjct: 4   VEVVPNITYQC-----------MELNFYK--IPD--NLPFSTKNLDLSFNPLRHLGSYSF 48

Query: 120 TDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS 179
                L  L+LS    +    G  ++L  L  L L  N +          L    F  L 
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--------QSLALGAFSGL- 99

Query: 180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFG 237
                               ++L+ L   +  +   L +   G L  LK L +  N +  
Sbjct: 100 --------------------SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS 138

Query: 238 MIPEELLESVIPIQELDLSGNGFT 261
               E   ++  ++ LDLS N   
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 37/210 (17%)

Query: 79  NLSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNGFK 136
           NL LS N     +   +  S   LQ LDLS  + I  I  G    L  L+ L L+ N  +
Sbjct: 32  NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 137 ---GGFPGNLRNLQ---------------------QLKVLDLRKNKLWG-DIGGIMSELK 171
               G    L +LQ                      LK L++  N +    +    S L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 172 NVEFVDLSFNRFHGGLGVGA-DNVSSIANTNLEVLDLGDNGITGELP--SFGMLPNLKVL 228
           N+E +DLS N+    +       +  +   NL  LDL  N +   +   +F  +  LK L
Sbjct: 150 NLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLS-LDLSLNPMN-FIQPGAFKEI-RLKEL 205

Query: 229 RLGSNQLFGMIPEELLESVIPIQELDLSGN 258
            L +NQL   +P+ + + +  +Q++ L  N
Sbjct: 206 ALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 35/203 (17%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGL------------- 125
            L  S N  T   +  +  ++ L Y D S N         ++ L  L             
Sbjct: 216 FLDCSSNKLTE--ID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLT 272

Query: 126 ---NYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR 182
                +     G +     ++ +  QL +LD +   +  ++   +S+   + ++ L+   
Sbjct: 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI-TEL--DLSQNPKLVYLYLNNTE 329

Query: 183 FHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEE 242
                      +    NT L+ L   +  I  +  S G +P L        Q   M  E 
Sbjct: 330 LT--------ELDVSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMPKET 380

Query: 243 LLESVIPI----QELDLSGNGFT 261
           L  + + I      LD  GN   
Sbjct: 381 LTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 42/184 (22%), Positives = 67/184 (36%), Gaps = 27/184 (14%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L+   N  T   V  L   + L YL+   NK +  +   ++    L YLN + N     
Sbjct: 89  YLACDSNKLTNLDVTPL---TKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLT-- 140

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
              ++ +  QL  LD   NK    +   ++    +  +D SFN+           +    
Sbjct: 141 -EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT--------ELDVSQ 189

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEEL-LESVIPIQELDLSG 257
           N  L  L+   N IT +L        L  L   SN+L      E+ +  +  +   D S 
Sbjct: 190 NKLLNRLNCDTNNIT-KLD-LNQNIQLTFLDCSSNKL-----TEIDVTPLTQLTYFDCSV 242

Query: 258 NGFT 261
           N  T
Sbjct: 243 NPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 21/183 (11%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           +   +          +   +++L  LD  N+  I  + G I  L GL  L  + N     
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSS-ITDMTG-IEKLTGLTKLICTSNNITT- 78

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
              +L     L  L    NKL  ++   ++ L  + +++   N+           +    
Sbjct: 79  --LDLSQNTNLTYLACDSNKL-TNL--DVTPLTKLTYLNCDTNKL--------TKLDVSQ 125

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
           N  L  L+   N +T E+        L  L    N+    +          +  LD S N
Sbjct: 126 NPLLTYLNCARNTLT-EID-VSHNTQLTELDCHLNKKITKLDVTPQTQ---LTTLDCSFN 180

Query: 259 GFT 261
             T
Sbjct: 181 KIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 21/118 (17%), Positives = 32/118 (27%), Gaps = 18/118 (15%)

Query: 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLE 203
           N                       +L  +  +D   +           +++ I   T L 
Sbjct: 19  NFASEVAAAFEMQAT---DTISEEQLATLTSLDCHNSSIT--------DMTGIEKLTGLT 67

Query: 204 VLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            L    N IT  L       NL  L   SN+L   +    L     +  L+   N  T
Sbjct: 68  KLICTSNNIT-TLD-LSQNTNLTYLACDSNKL-TNLDVTPLTK---LTYLNCDTNKLT 119

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 54/213 (25%), Positives = 70/213 (32%), Gaps = 51/213 (23%)

Query: 57  PDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISS-LQYLDLSNNKFIGPI 115
               SCP       C        LS S        VP   S+ S    LDLS+N  +  +
Sbjct: 7   RSVVSCP---ANCLCASNI----LSCSKQQLPN--VPQ--SLPSYTALLDLSHNN-LSRL 54

Query: 116 PGRIT--DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNV 173
               T   L  L+ L LS N            +  L+ LDL  N L          L   
Sbjct: 55  RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL--------HTLDEF 106

Query: 174 EFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLG 231
            F DL                       LEVL L +N I   +   +F  +  L+ L L 
Sbjct: 107 LFSDL---------------------QALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLS 144

Query: 232 SNQLFGMIPEELLESVIP---IQELDLSGNGFT 261
            NQ+    P EL++       +  LDLS N   
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 5e-12
 Identities = 36/141 (25%), Positives = 52/141 (36%), Gaps = 15/141 (10%)

Query: 121 DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180
           D     YL+   + F             ++VL L    L   +  +  +L  V  +DLS 
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHL-EQLLLVTHLDLSH 472

Query: 181 NRFH---GGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFG 237
           NR       L          A   LEVL   DN +   +     LP L+ L L +N+L  
Sbjct: 473 NRLRALPPALA---------ALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQ 522

Query: 238 MIPEELLESVIPIQELDLSGN 258
               + L S   +  L+L GN
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 1e-11
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 41/155 (26%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L+  + T  ++  L  +  + +LDLS+N        R+  L                 
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHN--------RLRAL----------------- 478

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
           P  L  L+ L+VL    N L  ++ G+ + L  ++ + L  NR        +  +  + +
Sbjct: 479 PPALAALRCLEVLQASDNAL-ENVDGV-ANLPRLQELLLCNNRLQQ-----SAAIQPLVS 531

Query: 200 -TNLEVLDLGDNGITGELPSF-----GMLPNLKVL 228
              L +L+L  N +  +          MLP++  +
Sbjct: 532 CPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 1e-11
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 22/152 (14%)

Query: 95  LGSISSLQYLDLSN--------NKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNL 146
           L   S+L+ +D           +KF+        +   +  L+L+          +L  L
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQL 462

Query: 147 QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLEVL 205
             +  LDL  N+L   +   ++ L+ +E +  S N          +NV  +AN   L+ L
Sbjct: 463 LLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNAL--------ENVDGVANLPRLQEL 513

Query: 206 DLGDNGITG--ELPSFGMLPNLKVLRLGSNQL 235
            L +N +     +      P L +L L  N L
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 6e-09
 Identities = 32/214 (14%), Positives = 54/214 (25%), Gaps = 19/214 (8%)

Query: 59  TKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGR 118
               P     V            L  +           +   L   +LS  K    +   
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWC-RDSATDEQLFRCELSVEK-STVLQSE 367

Query: 119 ITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL----------WGDIGGIMS 168
           +     L  L              +R L  L                       +  + S
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427

Query: 169 ELKNVEFVDLSFNRFHGGLGVGADNVSSIAN----TNLEVLDLGDNGITGELPSFGMLPN 224
           +      V          L +   +++ + +      +  LDL  N +    P+   L  
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC 487

Query: 225 LKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
           L+VL+   N L  +     L     +QEL L  N
Sbjct: 488 LEVLQASDNALENVDGVANLPR---LQELLLCNN 518

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           +L LS N     + PAL ++  L+ L  S+N  +  + G + +L  L  L L  N  +  
Sbjct: 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVDG-VANLPRLQELLLCNNRLQQ- 522

Query: 139 FPG--NLRNLQQLKVLDLRKNKL 159
                 L +  +L +L+L+ N L
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSL 545

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 27/202 (13%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L  N  +     A   +  LQ L +S N  +  IP  +     L  L +  N  +   
Sbjct: 83  LVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL--PSSLVELRIHDNRIRKVP 139

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDI--GGIMSELKNVEFVDLSFNRFHG----------GL 187
            G    L+ +  +++  N L       G    L  + ++ +S  +  G           L
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL 198

Query: 188 GVGADNVSSIAN------TNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMI 239
            +  + + +I        + L  L LG N I   +   S   LP L+ L L +N+L   +
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL-SRV 256

Query: 240 PEELLESVIPIQELDLSGNGFT 261
           P   L  +  +Q + L  N  T
Sbjct: 257 PAG-LPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 14/164 (8%)

Query: 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159
            L+ +  S+      +P  I+       L+L  N        + + LQ L  L L  NK+
Sbjct: 34  HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 160 WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-- 217
                   S L+ ++ + +S N            +     ++L  L + DN I  ++P  
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV--------EIPPNLPSSLVELRIHDNRIR-KVPKG 141

Query: 218 SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
            F  L N+  + +G N L     E      + +  L +S    T
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 31/160 (19%)

Query: 80  LSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKG 137
           L L  N     I    L   S L  L L +N+ I  I     + L  L  L+L  N    
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSR 255

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
             P  L +L+ L+V+ L  N +        +++   +F  + F                +
Sbjct: 256 -VPAGLPDLKLLQVVYLHTNNI--------TKVGVNDFCPVGFG---------------V 291

Query: 198 ANTNLEVLDLGDNGIT-GELP--SFGMLPNLKVLRLGSNQ 234
                  + L +N +   E+   +F  + +   ++ G+ +
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 28/193 (14%)

Query: 80  LSLSGNNFTGRIVPALG-SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
           + + GN                L YL +S  K +  IP  +     LN L+L  N  +  
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDL--PETLNELHLDHNKIQAI 208

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI- 197
              +L    +L  L L  N++     G +S L  +  + L  N+            S + 
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-----------SRVP 257

Query: 198 ----ANTNLEVLDLGDNGIT-------GELPSFGMLPNLKVLRLGSNQL-FGMIPEELLE 245
                   L+V+ L  N IT         +           + L +N + +  +      
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 246 SVIPIQELDLSGN 258
            V     +     
Sbjct: 318 CVTDRLAIQFGNY 330

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.7 bits (153), Expect = 8e-12
 Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 28/204 (13%)

Query: 60  KSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRI 119
           +  P        +        +L   + T         ++S+  +  +N+  I  + G I
Sbjct: 11  QIFP---DDAFAETI----KANLKKKSVTD--AVTQNELNSIDQIIANNSD-IKSVQG-I 59

Query: 120 TDLWGLNYLNLSMNGFK--GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVD 177
             L  + YL L  N            + L  L  L L  N+L     G+  +L N++ + 
Sbjct: 60  QYLPNVRYLALGGNKLHDISAL----KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115

Query: 178 LSFNRFHGGLGVGA-DNVSSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQ 234
           L  N+    L  G  D +     TNL  L+L  N +   LP   F  L NL  L L  NQ
Sbjct: 116 LVENQLQS-LPDGVFDKL-----TNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQ 168

Query: 235 LFGMIPEELLESVIPIQELDLSGN 258
           L   +PE + + +  +++L L  N
Sbjct: 169 L-QSLPEGVFDKLTQLKDLRLYQN 191

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 45/164 (27%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           V L         ++   L ++ + ++L LS N         I  +               
Sbjct: 28  VELHGMIPPIE-KMDATLSTLKACKHLALSTNN--------IEKI--------------- 63

Query: 138 GFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197
               +L  ++ L++L L +N +   I  + +    +E + +S+N+           ++S+
Sbjct: 64  ---SSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQ-----------IASL 108

Query: 198 AN----TNLEVLDLGDNGIT--GELPSFGMLPNLKVLRLGSNQL 235
           +      NL VL + +N IT  GE+     L  L+ L L  N L
Sbjct: 109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 128 LNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGL 187
           L+  +   +      L  L+  K L L  N +   I  + S ++N+  + L  N      
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNI-EKISSL-SGMENLRILSLGRNLIK--- 83

Query: 188 GVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESV 247
               +N+ ++A+  LE L +  N I   L     L NL+VL + +N++      + L ++
Sbjct: 84  --KIENLDAVAD-TLEELWISYNQIA-SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 248 IPIQELDLSGN 258
             +++L L+GN
Sbjct: 140 DKLEDLLLAGN 150

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 43/206 (20%), Positives = 68/206 (33%), Gaps = 48/206 (23%)

Query: 79  NLSLSGNNFTGR----IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG 134
            LSL     TG     +   L ++ +LQ L LS+N                    L   G
Sbjct: 89  KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-------------------LLGDAG 129

Query: 135 FKGGFPGNLRNLQQLKVLDLRKNKL----WGDIGGIMSELKNVEFVDLSFNRFHGGLGVG 190
            +    G L    +L+ L L    L       +  ++    + + + +S N         
Sbjct: 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI------N 183

Query: 191 ADNVSSIA------NTNLEVLDLGDNGITGE-----LPSFGMLPNLKVLRLGSNQL--FG 237
              V  +          LE L L   G+T +             +L+ L LGSN+L   G
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 238 M--IPEELLESVIPIQELDLSGNGFT 261
           M  +   LL     ++ L +   G T
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGIT 269

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.7 bits (148), Expect = 7e-11
 Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 48/206 (23%)

Query: 79  NLSLSGNNFTGR----IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG 134
            L L   + +      +   L +    + L +SNN              G+  L     G
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA---------GVRVL---CQG 193

Query: 135 FKGGFPGNLRNLQQLKVLDLRKNKL----WGDIGGIMSELKNVEFVDLSFNRFHGGLGVG 190
            K        +  QL+ L L    +      D+ GI++   ++  + L  N+       G
Sbjct: 194 LK-------DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL------G 240

Query: 191 ADNVSSIA------NTNLEVLDLGDNGITGE-----LPSFGMLPNLKVLRLGSNQL--FG 237
              ++ +       ++ L  L + + GIT +             +LK L L  N+L   G
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 238 M--IPEELLESVIPIQELDLSGNGFT 261
              + E LLE    ++ L +    FT
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.7 bits (148), Expect = 8e-11
 Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 48/205 (23%)

Query: 80  LSLSGNNFTGR----IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGF 135
           + L     T      I  AL    +L  L+L +N                    L   G 
Sbjct: 33  VRLDDCGLTEARCKDISSALRVNPALAELNLRSN-------------------ELGDVGV 73

Query: 136 KGGFPGNLRNLQQLKVLDLRKNKL----WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGA 191
                G      +++ L L+   L     G +   +  L  ++ + LS N        G 
Sbjct: 74  HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL------GD 127

Query: 192 DNVSSIA------NTNLEVLDLGDNGITGE-----LPSFGMLPNLKVLRLGSNQL----F 236
             +  +          LE L L    ++              P+ K L + +N +     
Sbjct: 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187

Query: 237 GMIPEELLESVIPIQELDLSGNGFT 261
            ++ + L +S   ++ L L   G T
Sbjct: 188 RVLCQGLKDSPCQLEALKLESCGVT 212

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 48/182 (26%)

Query: 99  SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158
             +Q LD+   +                 L              L  LQQ +V+ L    
Sbjct: 3   LDIQSLDIQCEEL---------SDARWAEL--------------LPLLQQCQVVRLDDCG 39

Query: 159 L----WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA------NTNLEVLDLG 208
           L      DI   +     +  ++L  N       +G   V  +       +  ++ L L 
Sbjct: 40  LTEARCKDISSALRVNPALAELNLRSNE------LGDVGVHCVLQGLQTPSCKIQKLSLQ 93

Query: 209 DNGITGE-----LPSFGMLPNLKVLRLGSNQL----FGMIPEELLESVIPIQELDLSGNG 259
           +  +TG        +   LP L+ L L  N L      ++ E LL+    +++L L    
Sbjct: 94  NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153

Query: 260 FT 261
            +
Sbjct: 154 LS 155

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 31/206 (15%), Positives = 65/206 (31%), Gaps = 50/206 (24%)

Query: 80  LSLSGNNFTGR----IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGF 135
           L +     T +    +   L +  SL+ L L+ N                    L   G 
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-------------------ELGDEGA 301

Query: 136 KGGFPGNLRNLQQLKVLDLRKNKLWGDIGGI-----MSELKNVEFVDLSFNRFHGGLGVG 190
           +      L    QL+ L ++                +++ + +  + +S NR      + 
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSF-TAACCSHFSSVLAQNRFLLELQISNNR------LE 354

Query: 191 ADNVSSIA------NTNLEVLDLGDNGITGE-----LPSFGMLPNLKVLRLGSNQL---- 235
              V  +        + L VL L D  ++         +     +L+ L L +N L    
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414

Query: 236 FGMIPEELLESVIPIQELDLSGNGFT 261
              + E + +    +++L L    ++
Sbjct: 415 ILQLVESVRQPGCLLEQLVLYDIYWS 440

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 34/163 (20%)

Query: 99  SSLQYLDLSNNKFIG-PIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157
                L L+NN+F      G    L  L  +N S N       G       +  + L  N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP 217
           +L          +++  F  L                      +L+ L L  N IT  + 
Sbjct: 92  RL--------ENVQHKMFKGL---------------------ESLKTLMLRSNRIT-CVG 121

Query: 218 --SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
             SF  L ++++L L  NQ+   +     +++  +  L+L  N
Sbjct: 122 NDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 38/146 (26%)

Query: 115 IPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174
           IP    +L  LN    ++    G F    + L QL+ ++   NK+        ++++   
Sbjct: 30  IPQYTAELR-LNNNEFTVLEATGIF----KKLPQLRKINFSNNKI--------TDIEEGA 76

Query: 175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGS 232
           F                        + +  + L  N +   +    F  L +LK L L S
Sbjct: 77  FEGA---------------------SGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRS 114

Query: 233 NQLFGMIPEELLESVIPIQELDLSGN 258
           N++   +  +    +  ++ L L  N
Sbjct: 115 NRI-TCVGNDSFIGLSSVRLLSLYDN 139

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 80  LSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRITD-LWGLNYLNLSMNGFKG 137
           ++ S N  T  I   A    S +  + L++N+ +  +  ++   L  L  L L  N    
Sbjct: 62  INFSNNKIT-DIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITC 119

Query: 138 GFPGNLRNLQQLKVLDLRKNKL 159
               +   L  +++L L  N++
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQI 141

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-- 199
              N  + + LDLR  K+   I  + + L   + +D S N            +  +    
Sbjct: 14  QYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDN-----------EIRKLDGFP 61

Query: 200 --TNLEVLDLGDNGITGELPSFG-MLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256
               L+ L + +N I          LP+L  L L +N L  +   + L S+  +  L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 257 GNGFT 261
            N  T
Sbjct: 122 RNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 37/154 (24%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L G      I     ++     +D S+N+ I  + G    L  L  L ++ N      
Sbjct: 24  LDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKLDG-FPLLRRLKTLLVNNNRICRIG 80

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
            G  + L  L  L L  N L         EL +++   L+                  + 
Sbjct: 81  EGLDQALPDLTELILTNNSL--------VELGDLDP--LA------------------SL 112

Query: 200 TNLEVLDLGDNGITGELPS-----FGMLPNLKVL 228
            +L  L +  N +T             +P ++VL
Sbjct: 113 KSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVL 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 128 LNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGL 187
           + L  N  K   PG     ++L+ +DL  N++          L+++  + L  N+    L
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 188 GVGA-DNVSSIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELL 244
                + +      +L++L L  N I   L   +F  L NL +L L  N+L   I +   
Sbjct: 96  PKSLFEGL-----FSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTF 148

Query: 245 ESVIPIQELDLSGN 258
             +  IQ + L+ N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 38/159 (23%), Positives = 55/159 (34%), Gaps = 36/159 (22%)

Query: 79  NLSLSGNNFTGRIVP-ALGSISSLQYLDLSNNKFIGPIPGRITD-LWGLNYLNLSMNGFK 136
            + L  N     I P A      L+ +DLSNN+ I  +       L  LN L L  N   
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS 196
                    L  L++L L  NK+        + L+   F DL                  
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKI--------NCLRVDAFQDL------------------ 127

Query: 197 IANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSN 233
               NL +L L DN +   +   +F  L  ++ + L  N
Sbjct: 128 ---HNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.1 bits (133), Expect = 8e-10
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 23/151 (15%)

Query: 90  RIVPALG--SISSLQYLDLSNNKF-IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNL 146
           RI   L   + S ++ L L N++   G + G   +   L +L+    G       NL  L
Sbjct: 6   RIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKL 63

Query: 147 QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI----ANTNL 202
            +LK L+L  N++ G +  +  +  N+  ++LS N+          ++S+I       NL
Sbjct: 64  NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI--------KDLSTIEPLKKLENL 115

Query: 203 EVLDLGDNGITGELPS-----FGMLPNLKVL 228
           + LDL +  +T  L       F +LP L  L
Sbjct: 116 KSLDLFNCEVT-NLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 17/123 (13%)

Query: 142 NLRNLQQLKVLDLRKNKL-WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN- 199
             R    +K L L  ++   G + G+  E + +EF+                 ++SIAN 
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-----------GLTSIANL 60

Query: 200 ---TNLEVLDLGDNGITGELPSFG-MLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255
                L+ L+L DN ++G L       PNL  L L  N++  +   E L+ +  ++ LDL
Sbjct: 61  PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

Query: 256 SGN 258
              
Sbjct: 121 FNC 123

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 17/202 (8%)

Query: 60  KSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRI 119
           K+C  + TG +C+     V+    G +     VP+ G  +  + LDL +           
Sbjct: 2   KTCE-TVTGCTCNEGKKEVDCQ--GKSLDS--VPS-GIPADTEKLDLQSTGLATLSDATF 55

Query: 120 TDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS 179
             L  L +LNL  N  +    G   +L +L  L L  N+L     G+   L  ++ + L 
Sbjct: 56  RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115

Query: 180 FNRFHGGLGVGA-DNVSSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLF 236
            N+    L  G  D +     T L+ L L  N +   +P+  F  L NL+ L L +NQL 
Sbjct: 116 GNQLK-SLPSGVFDRL-----TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168

Query: 237 GMIPEELLESVIPIQELDLSGN 258
             +P    + +  +Q + L GN
Sbjct: 169 S-VPHGAFDRLGKLQTITLFGN 189

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 37/155 (23%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L    +N  G+I        +L++L L N   +  +   +  L  L  L LS N   GG
Sbjct: 30  VLDNCKSN-DGKIEGLTAEFVNLEFLSLINVG-LISVSN-LPKLPKLKKLELSENRIFGG 86

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
                  L  L  L+L  NKL         ++  +E +                      
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKL--------KDISTLEPLK--------------------K 118

Query: 199 NTNLEVLDLGDNGITGELPS-----FGMLPNLKVL 228
              L+ LDL +  +T  L       F +LP L  L
Sbjct: 119 LECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 124 GLNYLNLSMNGFK-GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR 182
            +  L L       G   G       L+ L L    L   +  +  +L  ++ ++LS NR
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSNL-PKLPKLKKLELSENR 82

Query: 183 FHGGLGVGADNVSSIANTNLEVLDLGDNGIT--GELPSFGMLPNLKVLRLGSNQL 235
             GGL + A+ +      NL  L+L  N +     L     L  LK L L + ++
Sbjct: 83  IFGGLDMLAEKL-----PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 144 RNLQQLKVLDLRKNKL-WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN--- 199
           R    ++ L L   K   G I G+ +E  N+EF+ L               + S++N   
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-----------GLISVSNLPK 69

Query: 200 -TNLEVLDLGDNGITGELPSFG-MLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
              L+ L+L +N I G L      LPNL  L L  N+L  +   E L+ +  ++ LDL  
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 258 N 258
            
Sbjct: 130 C 130

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 45/219 (20%), Positives = 74/219 (33%), Gaps = 45/219 (20%)

Query: 80  LSLSGNNFTGRIVPALGSI-----SSLQYLDLSNNKF-----------IGPIPGRITDLW 123
           L+LSGN+   +    L  I     +++  L+LS N             +  IP  IT L 
Sbjct: 56  LNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD 115

Query: 124 GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIG------GIMSELKNVEFVD 177
            L + + S                 +  L+LR N L G          + +   NV  ++
Sbjct: 116 -LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLN 173

Query: 178 LSFNRFHGGLGVGADNVSSIA------NTNLEVLDLGDNGITGE----LPSFGMLPN--L 225
           L  N         + N + +A        ++  LDL  N +  +    L          +
Sbjct: 174 LRGNNL------ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227

Query: 226 KVLRLGSNQLFGMIPEEL---LESVIPIQELDLSGNGFT 261
             L L  N L G   E L    +S+  +Q + L  +   
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 34/204 (16%), Positives = 58/204 (28%), Gaps = 47/204 (23%)

Query: 94  ALGSISSLQYLDLSNNKFIGP------------IPGRITDLWGLNYLNLSMNGFKGGFPG 141
                  +  LDLS N  +               P  +T L  L+  +L           
Sbjct: 17  FTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLN-LSGNSLGFKNSDELVQI 74

Query: 142 NLRNLQQLKVLDLRKNKLWGDIG------GIMSELKNVEFVDLSFNRFHGGLGVGADNVS 195
                  +  L+L  N L            + +    +  +DL +N F       + + S
Sbjct: 75  LAAIPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDF------SSKSSS 127

Query: 196 SIA------NTNLEVLDLGDNGITGE--------LPSFGMLPNLKVLRLGSNQL--FGM- 238
                      ++  L+L  N +  +        L +     N+  L L  N L      
Sbjct: 128 EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA--NVNSLNLRGNNLASKNCA 185

Query: 239 -IPEELLESVIPIQELDLSGNGFT 261
            + + L      +  LDLS N   
Sbjct: 186 ELAKFLASIPASVTSLDLSANLLG 209

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 31/213 (14%), Positives = 62/213 (29%), Gaps = 37/213 (17%)

Query: 80  LSLSGNNFTGRIVPALGSI-----SSLQYLDLSNNKFIGPIPGR------ITDLWGLNYL 128
           L+L GN+   +    L  I     +++  L+L  N  +             +    +  L
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSL 201

Query: 129 NLSMN--GFKGGFP---GNLRNLQQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLS 179
           +LS N  G K               +  L+L  N L G     +  +   LK+++ V L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 180 FNRFHGGLGVGADNVSSI--ANTNLEVLDLGDNGITGE--------LPSFGMLPNLKVLR 229
           ++            + +       + ++D     I           +          V  
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSG--KADVPS 319

Query: 230 LGSNQLFGMIPEELLESVIPI----QELDLSGN 258
           L +  L      +     + I    +E   +  
Sbjct: 320 LLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 33/192 (17%), Positives = 69/192 (35%), Gaps = 19/192 (9%)

Query: 80  LSLSGNNFTGRIVP--ALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMN-GF 135
           L L   +     +P  A  ++ ++  + +S +  +  +      +L  + ++ +      
Sbjct: 36  LKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93

Query: 136 KGGFPGNLRNLQQLKVLDLRKNKLW--GDIGGIMSELKNVEFVDLSFNRFHGGLGVGA-D 192
               P  L+ L  LK L +    L    D+  + S       ++++ N +   + V A  
Sbjct: 94  TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS-TDIFFILEITDNPYMTSIPVNAFQ 152

Query: 193 NVSSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVI-P 249
            + +        L L +NG T  +    F     L  + L  N+   +I ++    V   
Sbjct: 153 GLCN----ETLTLKLYNNGFT-SVQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 250 IQELDLSGNGFT 261
              LD+S    T
Sbjct: 207 PSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 40/201 (19%)

Query: 69  VSCDPE----SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWG 124
           + C           +  ++  +     +P+L    S Q L L             ++L  
Sbjct: 1   MGCSSPPCECHQEEDFRVTCKDIQR--IPSLPP--STQTLKLIETHLRTIPSHAFSNLPN 56

Query: 125 LNYLNLSMNGFKGGFPGNL-RNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRF 183
           ++ + +S++        +   NL ++  +++R  +        ++ +      +L     
Sbjct: 57  ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-------LTYIDPDALKEL----- 104

Query: 184 HGGLGVGADNVSSIANTNLEVLDLGDNGIT--GELPSFGMLPNLKVLRLGSNQLFGMIPE 241
                             L+ L + + G+    +L          +L +  N     IP 
Sbjct: 105 ----------------PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 242 ELLESVIP-IQELDLSGNGFT 261
              + +      L L  NGFT
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 39/160 (24%)

Query: 80  LSLSGNNFTGRI--VPALGSISSLQYLDLSNNKFIGPIPGR----ITDLWGLNYLNLSMN 133
           L +           +  + S      L++++N ++  IP      + +      L L  N
Sbjct: 110 LGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNN 166

Query: 134 GFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADN 193
           GF     G   N  +L  + L KNK           L       +  + F G        
Sbjct: 167 GFT-SVQGYAFNGTKLDAVYLNKNKY----------LTV-----IDKDAFGG-------- 202

Query: 194 VSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSN 233
                 +   +LD+    +T  LPS   L +LK L   + 
Sbjct: 203 ----VYSGPSLLDVSQTSVT-ALPS-KGLEHLKELIARNT 236

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 54.2 bits (129), Expect = 9e-09
 Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 17/184 (9%)

Query: 48  HSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISS--LQYLD 105
           H         D +   +SW               L+     G    ++G      L+ L+
Sbjct: 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE 199

Query: 106 LSNNKFIGPIPGRIT--DLWGLNYLNLSMNGFKGGFPGNLRNLQ---------QLKVLDL 154
           + +      +   I   DL  L  L L +     GF G++   +          LK L +
Sbjct: 200 IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259

Query: 155 RKNKLWGDIGGIMSE---LKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
              +    +  +  E   L  +E +D+S        G            +L+ +++  N 
Sbjct: 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVL-TDEGARLLLDHVDKIKHLKFINMKYNY 318

Query: 212 ITGE 215
           ++ E
Sbjct: 319 LSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 15/150 (10%)

Query: 127 YLNLSMNGFKGGFPGNLRNLQ--QLKVLDLRKNKL-WGDIGGI-MSELKNVEFVDLSFNR 182
              L+    KG    ++       LK L++    L    +  I  S+L N+E + L    
Sbjct: 171 MPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230

Query: 183 FHGGLGVGADNVSSIAN----TNLEVLDLGDNGITGE----LPSFGMLPNLKVLRLGSNQ 234
              G     +    + +     NL+ L + D               +LP L+ + + +  
Sbjct: 231 EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290

Query: 235 LFGMIPEELLESVIPI---QELDLSGNGFT 261
           L       LL+ V  I   + +++  N  +
Sbjct: 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 36/202 (17%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITD---------LWGLNYLN 129
           NLSL G   +  IV  L   S+L  L+LS            ++            L+ LN
Sbjct: 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-------GFSEFALQTLLSSCSRLDELN 174

Query: 130 LS------MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRF 183
           LS          +         + QL +   RKN    D+  ++    N+  +DLS +  
Sbjct: 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV- 233

Query: 184 HGGLGVGADNVSSIAN-TNLEVLDLGD-NGITGE-LPSFGMLPNLKVLRLGSNQLFGMIP 240
                +  D          L+ L L     I  E L   G +P LK L+     +FG++P
Sbjct: 234 ----MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ-----VFGIVP 284

Query: 241 EELLESVIP-IQELDLSGNGFT 261
           +  L+ +   +  L ++ + FT
Sbjct: 285 DGTLQLLKEALPHLQINCSHFT 306

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 44/213 (20%), Positives = 74/213 (34%), Gaps = 23/213 (10%)

Query: 61  SCPVSWTGVSCDPESGSVN---LSLSGNNFTGRIVPALGS-ISSLQYLDLSNNKFIGPIP 116
            CP S+                + LS +      +  + S  S LQ L L   +   PI 
Sbjct: 76  RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135

Query: 117 GRITDLWGLNYLNLSM-NGFK-GGFPGNLRNLQQLKVLDLRKNKLWGDIG---GIMSELK 171
             +     L  LNLS  +GF        L +  +L  L+L     + +      +    +
Sbjct: 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195

Query: 172 NVEFVDLSFNRFHGGLGVGADNVSSIAN--TNLEVLDLGD-NGITGE-LPSFGMLPNLKV 227
            +  ++LS  R      +   ++S++     NL  LDL D   +  +    F  L  L+ 
Sbjct: 196 TITQLNLSGYRK----NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251

Query: 228 LRLGSNQLFGMIPEELLESVIP---IQELDLSG 257
           L L        I  E L  +     ++ L + G
Sbjct: 252 LSLSRCYD---IIPETLLELGEIPTLKTLQVFG 281

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 32/211 (15%), Positives = 63/211 (29%), Gaps = 55/211 (26%)

Query: 73  PESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLN--L 130
           P S  ++       F  +   +   +SSL+ L+L+  + + P+            +   L
Sbjct: 47  PPSELLDHLFFHYEFQNQRF-SAEVLSSLRQLNLAGVR-MTPV--------KCTVVAAVL 96

Query: 131 SMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGG--IMSELKNVEFVDLSFNRFHGGLG 188
                             L  ++L   +L    G   ++        + L  N       
Sbjct: 97  GSGRHA------------LDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSL----- 138

Query: 189 VGADNVSSIA------NTNLEVLDLGDNGIT---GELPSFGMLPN--LKVLRLGSNQL-- 235
            G +    +          +  L L +N +T     +   G+  N  +  L L    L  
Sbjct: 139 -GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197

Query: 236 -----FGMIPEELLESVIPIQELDLSGNGFT 261
                        L+    +QEL+++ NG  
Sbjct: 198 EGLELLA----AQLDRNRQLQELNVAYNGAG 224

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 42/149 (28%)

Query: 80  LSLSGNNFTGRIVPALGSI-----SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG 134
           L L  N+        L  +       +  L LSNN         +T   G+  L      
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN--------PLTAA-GVAVLMEG--- 178

Query: 135 FKGGFPGNLRNLQQLKVLDLRKNKLWGDIGG--IMSELKN---VEFVDLSFNRFHGGLGV 189
                   L     +  L L    L GD G   + ++L     ++ +++++N      G 
Sbjct: 179 --------LAGNTSVTHLSLLHTGL-GDEGLELLAAQLDRNRQLQELNVAYN------GA 223

Query: 190 GADNVSSIA-----NTNLEVLDLGDNGIT 213
           G     ++A     + +LE+L L  N ++
Sbjct: 224 GDTAALALARAAREHPSLELLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 22/167 (13%), Positives = 38/167 (22%), Gaps = 33/167 (19%)

Query: 80  LSLSGNNFTGR----IVPALGSISSLQYLDLSNNKFIGPIPGR-----ITDLWGLNYLNL 130
           LSL            +   L     LQ L+++ N   G            +   L  L+L
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHL 246

Query: 131 SMNGFK-------GGFPGNLRNLQQLKVLDLRKNKLWGDIGG--IMSELKNVEFVDLSFN 181
             N              G      ++ V       +  +     +    +N+   D +  
Sbjct: 247 YFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV-SEYWSVILSEVQRNLNSWDRARV 305

Query: 182 RFHGGL--------GVGADNVSSIA-----NTNLEVLDLGDNGITGE 215
           + H  L             N    A        +  L          
Sbjct: 306 QRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSP 352

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 62  CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRIT 120
           CP +     C P  GS  L  + +      +  L    +L  L + N + +  +    + 
Sbjct: 1   CPDA-----CCP-HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLR 53

Query: 121 DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159
            L  L  L +  +G +   P       +L  L+L  N L
Sbjct: 54  GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 33/124 (26%)

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
             +L   + L  L +   +    +  +           L                     
Sbjct: 24  LHHLPGAENLTELYIENQQ---HLQHLELRD----LRGL--------------------- 55

Query: 200 TNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG 257
             L  L +  +G+   +   +F   P L  L L  N L   +  + ++ +  +QEL LSG
Sbjct: 56  GELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGL-SLQELVLSG 112

Query: 258 NGFT 261
           N   
Sbjct: 113 NPLH 116

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 44/169 (26%), Positives = 60/169 (35%), Gaps = 34/169 (20%)

Query: 92  VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
           VP  G  +   YLDL  N       G   +L  L  L L  N  +    G    L  L  
Sbjct: 22  VPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80

Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
           L+L  N+L     G+  +L                             T L+ L L  N 
Sbjct: 81  LNLSTNQLQSLPNGVFDKL-----------------------------TQLKELALNTNQ 111

Query: 212 ITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
           +   LP   F  L  LK LRL  NQL   +P+ + + +  +Q + L  N
Sbjct: 112 LQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 27/81 (33%), Positives = 32/81 (39%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L L  N+           ++SL  L L  NK      G    L  L YLNLS N  +  
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 139 FPGNLRNLQQLKVLDLRKNKL 159
             G    L QLK L L  N+L
Sbjct: 92  PNGVFDKLTQLKELALNTNQL 112

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 46/168 (27%), Positives = 62/168 (36%), Gaps = 33/168 (19%)

Query: 92  VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
           VPA G  ++ Q L L +N+     PG    L  L  L L  N       G   +L QL V
Sbjct: 34  VPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92

Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
           LDL  N+L      +             F+R                  +L+ L +  N 
Sbjct: 93  LDLGTNQLTVLPSAV-------------FDRL----------------VHLKELFMCCNK 123

Query: 212 ITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
           +T ELP     L +L  L L  NQL   IP    + +  +    L GN
Sbjct: 124 LT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGN 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITD-LWGLNYLNLSMNGFKG 137
            L L GN FT  +   L +   L  +DLSNN+ I  +  +    +  L  L LS N  + 
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 138 GFPGNLRNLQQLKVLDLRKNKL 159
             P     L+ L++L L  N +
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 40/146 (27%)

Query: 115 IPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174
           IP  +T+L+ L+    ++       P  L N + L ++DL  N++        S L N  
Sbjct: 29  IPRDVTELY-LDGNQFTL------VPKELSNYKHLTLIDLSNNRI--------STLSNQS 73

Query: 175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGS 232
           F ++                     T L  L L  N +   +P   F  L +L++L L  
Sbjct: 74  FSNM---------------------TQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHG 111

Query: 233 NQLFGMIPEELLESVIPIQELDLSGN 258
           N +  ++PE     +  +  L +  N
Sbjct: 112 NDI-SVVPEGAFNDLSALSHLAIGAN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 200 TNLEVLDLGDNGITGELPS---FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256
            +   L L DN +   + S   FG LP+L  L L  NQL   I     E    IQEL L 
Sbjct: 29  LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLG 86

Query: 257 GN 258
            N
Sbjct: 87  EN 88

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 79  NLSLSGNNFTGRIVPALG---SISSLQYLDLSNNKFIGPIPGRITD-LWGLNYLNLSMNG 134
            L L+ N      + + G    +  L  L+L  N+ +  I     +    +  L L  N 
Sbjct: 33  ELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK 89

Query: 135 FKGGFPGNLRNLQQLKVLDLRKNKL 159
            K         L QLK L+L  N++
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQI 114

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 11/190 (5%)

Query: 80  LSLSG-NNFTGRIVPALGSI-SSLQYLDLSNNKFIGPIPGRITDLW----GLNYLNLSMN 133
           L LS    F+   + A+ +   +L+ LDL  +         ++        L  LN+S  
Sbjct: 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194

Query: 134 GFKGGFPGN---LRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVG 190
             +  F      +     LK L L +      +  ++     +E +            V 
Sbjct: 195 ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254

Query: 191 ADNVSSIAN-TNLEVLDLGDNGITGELPSFG-MLPNLKVLRLGSNQLFGMIPEELLESVI 248
           +    +++    L  L    + +   LP+   +   L  L L    +      +LL    
Sbjct: 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314

Query: 249 PIQELDLSGN 258
            +Q L +   
Sbjct: 315 KLQRLWVLDY 324

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.88
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.81
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.69
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.67
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.5
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.38
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.26
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.14
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.14
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.63
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.88
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.68
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.67
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.55
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.6e-34  Score=240.05  Aligned_cols=229  Identities=29%  Similarity=0.459  Sum_probs=182.9

Q ss_pred             cCChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcCCC---CCeEEEEcCCCCccc--cCcccccC
Q 042660           23 LGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPE---SGSVNLSLSGNNFTG--RIVPALGS   97 (261)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~~~---~~~~~L~l~~n~l~~--~~~~~~~~   97 (261)
                      .+.++|..||++||+++ .+|.  .+.+|...   .+| |.|.|.||.|+..   ..+++|++++|++++  .+|+.+..
T Consensus         2 ~c~~~~~~aL~~~k~~~-~~~~--~l~~W~~~---~~~-C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~   74 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDL-GNPT--TLSSWLPT---TDC-CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN   74 (313)
T ss_dssp             CSCHHHHHHHHHHHHHT-TCCG--GGTTCCTT---SCT-TTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGG
T ss_pred             CCCHHHHHHHHHHHHhc-CCcc--cccCCCCC---CCC-CcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhC
Confidence            35688999999999999 5675  37889753   344 6556999999864   577899999999999  89999999


Q ss_pred             CCCCCEEECcC-CcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660           98 ISSLQYLDLSN-NKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV  176 (261)
Q Consensus        98 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  176 (261)
                      +++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            99999999995 99999999999999999999999999998899999999999999999999988999999999999999


Q ss_pred             ecccCcccccCCccccccc-cCC------------------CCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCc
Q 042660          177 DLSFNRFHGGLGVGADNVS-SIA------------------NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       177 ~l~~n~l~~~~p~~~~~~~-~l~------------------~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~  236 (261)
                      ++++|.+++.+|..+..+. .+.                  ..+|++|++++|.+++.+| .+..+++|+.|++++|.++
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence            9999999888888777665 331                  1125566666666655555 5666666777777777766


Q ss_pred             ccCcHHHHhCCCCccEEEccCccC
Q 042660          237 GMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       237 ~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +.++.  +..+++|+.|++++|.+
T Consensus       235 ~~~~~--~~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          235 FDLGK--VGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             CBGGG--CCCCTTCCEEECCSSCC
T ss_pred             eecCc--ccccCCCCEEECcCCcc
Confidence            44443  34456777777777765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=8e-31  Score=238.44  Aligned_cols=225  Identities=20%  Similarity=0.303  Sum_probs=182.8

Q ss_pred             hhHHHHHHHHHHhcCCCCCCCCC-------CCCcCCCCCCCCCCCCCc---ceEEcCCCCCeEEEEcCCCCccccCcccc
Q 042660           26 ESELGSLIEFKKGIQDDPLGRIH-------STWNITSLPDTKSCPVSW---TGVSCDPESGSVNLSLSGNNFTGRIVPAL   95 (261)
Q Consensus        26 ~~~~~~l~~~~~~~~~~p~~~~~-------~~w~~~~~~~~~~c~~~~---~gv~c~~~~~~~~L~l~~n~l~~~~~~~~   95 (261)
                      ..|..||.++|.++. ++.+...       ..|+..   .+   .|.|   .||+|+..+.++.|+|+++++.|.+|+++
T Consensus        29 ~~d~~aL~~~~~~~~-~~~w~~~~~~~~~~~~W~~~---~~---~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l  101 (636)
T 4eco_A           29 IKDYLALKEIWDALN-GKNWSQQGFGTQPGANWNFN---KE---LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAI  101 (636)
T ss_dssp             HHHHHHHHHHHHHTT-GGGCCCCC------CCCCCS---SC---GGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGG
T ss_pred             HHHHHHHHHHHHHcC-CCCcccCCcCCccCCCCCCC---CC---cccccCCCCeEEcCCCCEEEEEecCcccCCcCChHH
Confidence            479999999999994 3333212       268753   23   2499   99999877788899999999999999999


Q ss_pred             cCCCCCCEEECcCCcC----------------------------------------------------------------
Q 042660           96 GSISSLQYLDLSNNKF----------------------------------------------------------------  111 (261)
Q Consensus        96 ~~l~~L~~L~l~~n~l----------------------------------------------------------------  111 (261)
                      +++++|++|++++|.+                                                                
T Consensus       102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  181 (636)
T 4eco_A          102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI  181 (636)
T ss_dssp             GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred             hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence            9999999999998843                                                                


Q ss_pred             --------------cCCCCccccCCCCCCEEEccCCcCcCC-----------------CCcccc--CCCCCCEEEcccCc
Q 042660          112 --------------IGPIPGRITDLWGLNYLNLSMNGFKGG-----------------FPGNLR--NLQQLKVLDLRKNK  158 (261)
Q Consensus       112 --------------~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~  158 (261)
                                    ++ +|..+.++++|++|++++|.+++.                 +|..++  ++++|++|++++|.
T Consensus       182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~  260 (636)
T 4eco_A          182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP  260 (636)
T ss_dssp             CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred             chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence                          34 778899999999999999999985                 899999  99999999999999


Q ss_pred             cccccchhccCCCCCCEEecccCc-ccc-cCCcccccccc-CCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccC
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNR-FHG-GLGVGADNVSS-IANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSN  233 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n  233 (261)
                      +.+.+|..++++++|++|++++|. ++| .+|..+..+.. ...++|++|++++|+++..+.  .++.+++|+.|++++|
T Consensus       261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC
T ss_pred             CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC
Confidence            999999999999999999999998 988 78887776510 011356888888888885444  5788888888888888


Q ss_pred             cCcccCcHHHHhCCCCccEEEccCccC
Q 042660          234 QLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      .++|.+|  .+..+++|+.|++++|.+
T Consensus       341 ~l~g~ip--~~~~l~~L~~L~L~~N~l  365 (636)
T 4eco_A          341 QLEGKLP--AFGSEIKLASLNLAYNQI  365 (636)
T ss_dssp             CCEEECC--CCEEEEEESEEECCSSEE
T ss_pred             cCccchh--hhCCCCCCCEEECCCCcc
Confidence            8887777  334455677777777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=2.7e-29  Score=232.92  Aligned_cols=222  Identities=26%  Similarity=0.386  Sum_probs=164.1

Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcCCCCCeEEEEcCCCCcccc---Cc-----
Q 042660           21 VVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGR---IV-----   92 (261)
Q Consensus        21 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~~~~~~~~L~l~~n~l~~~---~~-----   92 (261)
                      ++++.++|+.||++||+++. ||. . +++|+..   .+| |  .|.||+|+ .+.++.|+++++.+.|.   ++     
T Consensus         6 ~~~~~~~~~~all~~k~~~~-~~~-~-l~~W~~~---~~~-C--~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~   75 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLP-DKN-L-LPDWSSN---KNP-C--TFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLS   75 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCS-CTT-S-STTCCTT---SCG-G--GSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTT
T ss_pred             cccCCHHHHHHHHHHHhhCC-Ccc-c-ccCCCCC---CCC-c--CCcceEEC-CCcEEEEECCCCCcCCccCccChhHhc
Confidence            44556799999999999995 777 4 8899743   343 4  99999998 46677999999998876   44     


Q ss_pred             ------------------ccccCCCCCCEEECcCCcCcCCCCc--cccCCCCCCEEEccCCcCcCCCCccc-cCCCCCCE
Q 042660           93 ------------------PALGSISSLQYLDLSNNKFIGPIPG--RITDLWGLNYLNLSMNGFKGGFPGNL-RNLQQLKV  151 (261)
Q Consensus        93 ------------------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~  151 (261)
                                        ..+..+++|++|++++|.+.+.+|.  .+..+++|++|++++|.+.+..|..+ ..+++|++
T Consensus        76 L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  155 (768)
T 3rgz_A           76 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV  155 (768)
T ss_dssp             CTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred             cCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence                              4566677778888888887777776  77777888888888887776666655 67777888


Q ss_pred             EEcccCccccccchh---ccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEE
Q 042660          152 LDLRKNKLWGDIGGI---MSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVL  228 (261)
Q Consensus       152 L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  228 (261)
                      |++++|.+.+..+..   +..+++|++|++++|.+++..|.  ..     .++|++|++++|.+++.+|.++.+++|++|
T Consensus       156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~-----l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L  228 (768)
T 3rgz_A          156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SR-----CVNLEFLDVSSNNFSTGIPFLGDCSALQHL  228 (768)
T ss_dssp             EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TT-----CTTCCEEECCSSCCCSCCCBCTTCCSCCEE
T ss_pred             EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--cc-----CCcCCEEECcCCcCCCCCcccccCCCCCEE
Confidence            888888777776665   66777777777777777654432  22     246688888888888777777778888888


Q ss_pred             EcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          229 RLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       229 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      ++++|.+++.+|.. +..+++|+.|++++|.+
T Consensus       229 ~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l  259 (768)
T 3rgz_A          229 DISGNKLSGDFSRA-ISTCTELKLLNISSNQF  259 (768)
T ss_dssp             ECCSSCCCSCHHHH-TTTCSSCCEEECCSSCC
T ss_pred             ECcCCcCCCcccHH-HhcCCCCCEEECCCCcc
Confidence            88888887655544 45567788888887765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=4.8e-30  Score=238.72  Aligned_cols=227  Identities=18%  Similarity=0.287  Sum_probs=180.5

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCCCCCCCcCCC-CCCCCCCCCCc------------ceEEcCCCCCeEEEEcCCCCccccC
Q 042660           25 SESELGSLIEFKKGIQDDPLGRIHSTWNITS-LPDTKSCPVSW------------TGVSCDPESGSVNLSLSGNNFTGRI   91 (261)
Q Consensus        25 ~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~-~~~~~~c~~~~------------~gv~c~~~~~~~~L~l~~n~l~~~~   91 (261)
                      ..+|..||++||+++ .+|      +|+... .+....|.|.|            .||.|+..+.++.|+|+++++.|.+
T Consensus       267 ~~~d~~ALl~~k~~l-~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i  339 (876)
T 4ecn_A          267 YIKDYKALKAIWEAL-DGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV  339 (876)
T ss_dssp             HHHHHHHHHHHHHHT-TGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred             chHHHHHHHHHHHHc-CCC------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence            458999999999999 566      465432 00111134699            9999987678889999999999999


Q ss_pred             cccccCCCCCCEEEC-cCCcCcCC--------------------------------------------------------
Q 042660           92 VPALGSISSLQYLDL-SNNKFIGP--------------------------------------------------------  114 (261)
Q Consensus        92 ~~~~~~l~~L~~L~l-~~n~l~~~--------------------------------------------------------  114 (261)
                      |++++++++|++|++ ++|.+.|.                                                        
T Consensus       340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~  419 (876)
T 4ecn_A          340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK  419 (876)
T ss_dssp             CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred             chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence            999999999999999 77765433                                                        


Q ss_pred             --------------------CCccccCCCCCCEEEccCCcCcC-----------------CCCcccc--CCCCCCEEEcc
Q 042660          115 --------------------IPGRITDLWGLNYLNLSMNGFKG-----------------GFPGNLR--NLQQLKVLDLR  155 (261)
Q Consensus       115 --------------------~~~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~l~  155 (261)
                                          +|..+.++++|++|++++|.+++                 .+|..++  ++++|+.|+++
T Consensus       420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls  499 (876)
T 4ecn_A          420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY  499 (876)
T ss_dssp             CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence                                77888999999999999999998                 3898887  99999999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCc-ccc-cCCccccccc--cCCCCCccEEEcccCccCccCc--cCCCCCCCCEEE
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNR-FHG-GLGVGADNVS--SIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLR  229 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~~~--~l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~  229 (261)
                      +|.+.+.+|..++++++|+.|++++|. ++| .+|..+..+.  ....++|+.|++++|.++..++  .+..+++|+.|+
T Consensus       500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~  579 (876)
T 4ecn_A          500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD  579 (876)
T ss_dssp             SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEE
T ss_pred             CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEE
Confidence            999999999999999999999999998 888 7887776653  1122466888888888874444  477777788888


Q ss_pred             cccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          230 LGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +++|.++ .+|  .+..+++|+.|++++|.++
T Consensus       580 Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          580 CVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             CTTSCCC-BCC--CCCTTSEESEEECCSSCCS
T ss_pred             CCCCCcc-cch--hhcCCCcceEEECcCCccc
Confidence            8888777 666  3455567777777777653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.1e-29  Score=213.30  Aligned_cols=230  Identities=20%  Similarity=0.306  Sum_probs=158.3

Q ss_pred             cCChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcCC---------CCCeEEEEcCCCCccccCcc
Q 042660           23 LGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDP---------ESGSVNLSLSGNNFTGRIVP   93 (261)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~~---------~~~~~~L~l~~n~l~~~~~~   93 (261)
                      ++..++..||++||..+..+|.+. ...|........  ..|.|.|+.|..         ...++.|++++|+++ .+|+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~-~~~w~~~~~~~~--~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~   98 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNP--QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD   98 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTH-HHHHHHHTTTCT--TSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred             ccCchHHHHHHHHHHhccCCchhh-hhhhcccccccc--cccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence            345689999999999987777664 678852211122  234999999952         246668888888887 6677


Q ss_pred             cccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccC----
Q 042660           94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSE----  169 (261)
Q Consensus        94 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----  169 (261)
                      .+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+..    
T Consensus        99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence            7777888888888888887 67777777888888888888777 56777777777777777776666665554432    


Q ss_pred             -----CCCCCEEecccCcccccCCccccccccCC------------------CCCccEEEcccCccCccCc-cCCCCCCC
Q 042660          170 -----LKNVEFVDLSFNRFHGGLGVGADNVSSIA------------------NTNLEVLDLGDNGITGELP-SFGMLPNL  225 (261)
Q Consensus       170 -----l~~L~~L~l~~n~l~~~~p~~~~~~~~l~------------------~~~L~~L~Ls~n~l~~~~~-~~~~~~~L  225 (261)
                           +++|++|++++|.++ .+|..+..+..+.                  .++|++|++++|.+.+..| .+..+++|
T Consensus       177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence                 555666666555554 4444444433221                  2456777777777777666 67777777


Q ss_pred             CEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          226 KVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       226 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +.|++++|.+.+.+|..+ ..+++|+.|++++|++
T Consensus       256 ~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             CEEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTT
T ss_pred             CEEECCCCCchhhcchhh-hcCCCCCEEeCCCCCc
Confidence            777777777777776654 4566788888887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=8e-26  Score=184.73  Aligned_cols=197  Identities=25%  Similarity=0.334  Sum_probs=169.6

Q ss_pred             CCCCCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEE
Q 042660           59 TKSCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYL  128 (261)
Q Consensus        59 ~~~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  128 (261)
                      .|.|...+..+.|...          .....|++++|++++..+..+..+++|++|++++|.+....+..|..+++|++|
T Consensus        11 ~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           11 VCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             SBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            3334446777888632          234589999999998777889999999999999999998777778999999999


Q ss_pred             EccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcc
Q 042660          129 NLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLG  208 (261)
Q Consensus       129 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls  208 (261)
                      ++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+     ++|++|+++
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~  165 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-----TSLKELRLY  165 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTCCEEECC
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC-----cccceeEec
Confidence            999999998777788999999999999999999888889999999999999999986655555555     466999999


Q ss_pred             cCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          209 DNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       209 ~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +|++++.++ .+..+++|+.|++++|.++ .++...+..+++|+.|++++|+++
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          166 NNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence            999998877 6889999999999999998 677777778889999999999863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=4.3e-26  Score=184.39  Aligned_cols=186  Identities=24%  Similarity=0.351  Sum_probs=146.4

Q ss_pred             CcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCcccc
Q 042660           65 SWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR  144 (261)
Q Consensus        65 ~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~  144 (261)
                      .|.|..|..  +..+++++++.++ .+|..+.  +.++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|.
T Consensus         6 ~~~gC~C~~--~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   80 (251)
T 3m19_A            6 TVTGCTCNE--GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD   80 (251)
T ss_dssp             HHHSSEEEG--GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CCCceEcCC--CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence            677778842  3346788888887 4555444  5788888888888888888888888888888888888887777788


Q ss_pred             CCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCC
Q 042660          145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLP  223 (261)
Q Consensus       145 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~  223 (261)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+.     +|++|+|++|++++.++ .+..++
T Consensus        81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~  155 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-----KLKELRLNTNQLQSIPAGAFDKLT  155 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-----cccEEECcCCcCCccCHHHcCcCc
Confidence            888888888888888877777888888888888888888765555455553     55888888888887777 688888


Q ss_pred             CCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          224 NLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +|+.|++++|.++ .++...+..+++|+.|++++|+++
T Consensus       156 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          156 NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCcee
Confidence            8888888888888 566666677778888888888764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.4e-25  Score=183.19  Aligned_cols=182  Identities=24%  Similarity=0.253  Sum_probs=110.7

Q ss_pred             EEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCc-CcCCCCccccCCCCCCEEEccc
Q 042660           78 VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG-FKGGFPGNLRNLQQLKVLDLRK  156 (261)
Q Consensus        78 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~  156 (261)
                      .+|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|. ++...|..+..+++|++|++++
T Consensus        35 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~  114 (285)
T 1ozn_A           35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR  114 (285)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred             eEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC
Confidence            366666666665555556666666666666666665555555556666666666664 5444455555555555555555


Q ss_pred             CccccccchhccCCCCCCEEecccCcccccCCccccccccCC-------------------CCCccEEEcccCccCccCc
Q 042660          157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-------------------NTNLEVLDLGDNGITGELP  217 (261)
Q Consensus       157 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------------~~~L~~L~Ls~n~l~~~~~  217 (261)
                      |.+.+..+..+..+++|++|++++|.+++..+..+..+..+.                   .++|++|++++|.+++..|
T Consensus       115 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  194 (285)
T 1ozn_A          115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP  194 (285)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence            555555555555555555555555555433333333332221                   2456777777777777666


Q ss_pred             -cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          218 -SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       218 -~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                       .+..+++|+.|++++|.++ .++.+.+..+++|+.|++++|++
T Consensus       195 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          195 HAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCE
T ss_pred             hHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCc
Confidence             6777778888888888887 46666666777888888888875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.1e-25  Score=194.48  Aligned_cols=123  Identities=24%  Similarity=0.229  Sum_probs=95.3

Q ss_pred             CCCCCCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCE
Q 042660           58 DTKSCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNY  127 (261)
Q Consensus        58 ~~~~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  127 (261)
                      ..|.|...+..|.|...          .....|++++|++++..+..|.++++|++|++++|.+.++.+..|.++++|++
T Consensus        37 ~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~  116 (440)
T 3zyj_A           37 SVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT  116 (440)
T ss_dssp             SSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred             CCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence            34445445678888642          23458999999999888888999999999999999998888888888999999


Q ss_pred             EEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660          128 LNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF  180 (261)
Q Consensus       128 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  180 (261)
                      |++++|.++...+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence            99999998876666788888899999988888766655566656666666555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=3.5e-25  Score=180.91  Aligned_cols=189  Identities=25%  Similarity=0.296  Sum_probs=164.3

Q ss_pred             CCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccc
Q 042660           64 VSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNL  143 (261)
Q Consensus        64 ~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~  143 (261)
                      |.|.|+.|.-......+++++++++. +|..+.  +.+++|++++|.+.+..+..|..+++|++|++++|.++...+..|
T Consensus         5 C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~   81 (270)
T 2o6q_A            5 CKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF   81 (270)
T ss_dssp             BGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh
Confidence            48999988644455689999999994 665544  579999999999998888899999999999999999997666677


Q ss_pred             cCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCC
Q 042660          144 RNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGML  222 (261)
Q Consensus       144 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~  222 (261)
                      ..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+.     +|++|++++|.+++.++ .+..+
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l  156 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-----KLTYLSLGYNELQSLPKGVFDKL  156 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-----CCCEEECCCCcCCccCHhHccCC
Confidence            8999999999999999888888899999999999999999877766666654     56999999999998777 68999


Q ss_pred             CCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          223 PNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       223 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      ++|+.|++++|.++ .++...+..+++|+.|++++|+++
T Consensus       157 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             TTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCC
Confidence            99999999999998 677777777889999999999874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=5.9e-25  Score=192.24  Aligned_cols=202  Identities=23%  Similarity=0.231  Sum_probs=130.3

Q ss_pred             CCCCCCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCE
Q 042660           58 DTKSCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNY  127 (261)
Q Consensus        58 ~~~~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  127 (261)
                      ..|.|...+..|.|...          .....|++++|++++..+..|.++++|++|++++|.+.++.+..|.++++|++
T Consensus        48 ~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  127 (452)
T 3zyi_A           48 SVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT  127 (452)
T ss_dssp             TTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence            34334334677888642          24558999999999988999999999999999999999888899999999999


Q ss_pred             EEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCC-ccccccccCC--------
Q 042660          128 LNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG-VGADNVSSIA--------  198 (261)
Q Consensus       128 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~l~--------  198 (261)
                      |++++|.++...+..|..+++|++|++++|.+....+..+..+++|+.|++++|...+.++ ..+..+..+.        
T Consensus       128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            9999999998777778899999999999999876666556555555555555532222221 1222221111        


Q ss_pred             ---------CCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          199 ---------NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       199 ---------~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                               .++|++|+|++|.+++..| .+..+++|+.|++++|.+++ ++...+..+++|+.|+|++|++
T Consensus       208 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          208 IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcC
Confidence                     1344555555555554444 44444445555554444442 2222233344444444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=6.4e-25  Score=182.41  Aligned_cols=193  Identities=24%  Similarity=0.316  Sum_probs=114.2

Q ss_pred             CCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCC-----------------
Q 042660           62 CPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGP-----------------  114 (261)
Q Consensus        62 c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------  114 (261)
                      |.|.|.++.|...          ....+|++++|+++...+..+..+++|++|++++|.+...                 
T Consensus         5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            6679999999752          2445888998888855555577888888888888877522                 


Q ss_pred             --------CCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccc
Q 042660          115 --------IPGRITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG  185 (261)
Q Consensus       115 --------~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (261)
                              +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus        85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence                    12234444555555555555544322 345555666666666666555555555566666666666666654


Q ss_pred             -cCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          186 -GLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       186 -~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                       ..|..+..+.     +|++|++++|.+++..| .+..+++|+.|++++|.++ .++...+..+++|+.|++++|++
T Consensus       165 ~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          165 NFLPDIFTELR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             GEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTCCEEECTTSCC
T ss_pred             ccchhHHhhCc-----CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccCCEeECCCCCC
Confidence             3444444432     44666666666665545 5555666666666666665 33333344455566666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=1.4e-25  Score=187.15  Aligned_cols=183  Identities=26%  Similarity=0.440  Sum_probs=154.6

Q ss_pred             eEEEEcCC-CCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           77 SVNLSLSG-NNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        77 ~~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ...|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  157 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence            34888884 88888888888889999999999999988888888888999999999999888888888888899999999


Q ss_pred             cCccccccchhccCCC-CCCEEecccCcccccCCccccccccCC-------------------CCCccEEEcccCccCcc
Q 042660          156 KNKLWGDIGGIMSELK-NVEFVDLSFNRFHGGLGVGADNVSSIA-------------------NTNLEVLDLGDNGITGE  215 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------------~~~L~~L~Ls~n~l~~~  215 (261)
                      +|.+.+.+|..+..++ +|++|++++|.+++..|..+..+. +.                   .++|+.|++++|.+++.
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence            9988888888888887 888888888888877776665543 21                   36789999999999988


Q ss_pred             CccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          216 LPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       216 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +|.+..+++|++|++++|.+++.+|..+ ..+++|+.|++++|+++
T Consensus       237 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          237 LGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             GGGCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSSEEE
T ss_pred             cCcccccCCCCEEECcCCcccCcCChHH-hcCcCCCEEECcCCccc
Confidence            8888888999999999999998887665 55789999999999863

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=7.5e-25  Score=203.19  Aligned_cols=181  Identities=30%  Similarity=0.487  Sum_probs=112.0

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|.
T Consensus       446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  525 (768)
T 3rgz_A          446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS  525 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence            56666666666666666666666666666666666666666666666666666666666666666666677777777777


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccccccC-----------------------------------------
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI-----------------------------------------  197 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l-----------------------------------------  197 (261)
                      +.+.+|..+..+++|+.|++++|.++|.+|..+......                                         
T Consensus       526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  605 (768)
T 3rgz_A          526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN  605 (768)
T ss_dssp             CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred             ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence            766666666667777777777777666666544321100                                         


Q ss_pred             ------------------------CCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccE
Q 042660          198 ------------------------ANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE  252 (261)
Q Consensus       198 ------------------------~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  252 (261)
                                              ...+|+.|++++|+++|.+| .++.++.|+.|+|++|.++|.+|..+ ..+++|+.
T Consensus       606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l-~~L~~L~~  684 (768)
T 3rgz_A          606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNI  684 (768)
T ss_dssp             GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCE
T ss_pred             ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH-hCCCCCCE
Confidence                                    01345566666666666555 56666666666666666666665544 33455666


Q ss_pred             EEccCccC
Q 042660          253 LDLSGNGF  260 (261)
Q Consensus       253 L~L~~N~l  260 (261)
                      |||++|++
T Consensus       685 LdLs~N~l  692 (768)
T 3rgz_A          685 LDLSSNKL  692 (768)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCcc
Confidence            66666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=9.6e-25  Score=184.96  Aligned_cols=180  Identities=21%  Similarity=0.192  Sum_probs=157.7

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ...+|++++|++++..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            45699999999998777789999999999999999998888899999999999999999997555568999999999999


Q ss_pred             cCccccccc-hhccCCCCCCEEecccCc-ccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEccc
Q 042660          156 KNKLWGDIG-GIMSELKNVEFVDLSFNR-FHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGS  232 (261)
Q Consensus       156 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~  232 (261)
                      +|.+....+ ..+..+++|++|++++|. +.+..+..+..+     ++|++|++++|.+++..| .+..+++|++|++++
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-----TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-----CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC-----CCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence            999976555 578999999999999994 665555666655     466999999999998877 899999999999999


Q ss_pred             CcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          233 NQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       233 n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      |.++ .+|...+..+++|+.|++++|.++
T Consensus       208 n~l~-~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          208 KQHI-LLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             SCST-THHHHHHHHTTTEEEEEEESCBCT
T ss_pred             Cccc-cchhhhhhhcccccEEECCCCccc
Confidence            9997 788877777889999999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=3.7e-24  Score=188.27  Aligned_cols=196  Identities=22%  Similarity=0.256  Sum_probs=151.6

Q ss_pred             CCCCCCCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCC
Q 042660           57 PDTKSCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLN  126 (261)
Q Consensus        57 ~~~~~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  126 (261)
                      |..|.|...|..|.|...          .....|++++|++++..+..|..+++|++|++++|.+.+..|..|.++++|+
T Consensus         4 p~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~   83 (477)
T 2id5_A            4 PPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR   83 (477)
T ss_dssp             STTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCC
Confidence            445545446778999642          2344899999999988889999999999999999999998899999999999


Q ss_pred             EEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEE
Q 042660          127 YLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLD  206 (261)
Q Consensus       127 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~  206 (261)
                      +|++++|.++...+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+.     +|++|+
T Consensus        84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~  158 (477)
T 2id5_A           84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-----SLEQLT  158 (477)
T ss_dssp             EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT-----TCCEEE
T ss_pred             EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC-----CCCEEE
Confidence            999999999976667789999999999999999998899999999999999999999877777776654     447777


Q ss_pred             cccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660          207 LGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN  258 (261)
Q Consensus       207 Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N  258 (261)
                      +++|.+++.++ .+..+++|+.|++++|.+++ ++...+..+.+|+.|++++|
T Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             EESCCCSSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECC
T ss_pred             CCCCcCcccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCC
Confidence            77777765555 46666666666666666653 33333334444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=2.1e-23  Score=175.10  Aligned_cols=196  Identities=24%  Similarity=0.286  Sum_probs=130.2

Q ss_pred             CCCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEc
Q 042660           61 SCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNL  130 (261)
Q Consensus        61 ~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  130 (261)
                      .|.|.+..+.|...          .....|++++|++++..+..+..+++|++|++++|.+.+..|..|..+++|++|++
T Consensus        28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            36679999999642          23458999999999888888999999999999999999888999999999999999


Q ss_pred             cCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccc--cCCccccccccCC----------
Q 042660          131 SMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG--GLGVGADNVSSIA----------  198 (261)
Q Consensus       131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~l~----------  198 (261)
                      ++|.++. +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+..+.          
T Consensus       108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            9999884 555443  567777777777766666666666666666666666642  3333333332221          


Q ss_pred             ------CCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          199 ------NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       199 ------~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                            .++|++|++++|.+++..+ .+..+++|+.|++++|.+++ ++...+..+++|+.|++++|++
T Consensus       185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCC
T ss_pred             cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhccCCCCCCEEECCCCcC
Confidence                  1345555555555555444 45555555555555555553 2222233344555555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=4.4e-24  Score=171.27  Aligned_cols=177  Identities=17%  Similarity=0.175  Sum_probs=146.8

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCc-CcCCCCccccCCCCCCEEEccC-CcCcCCCCccccCCCCCCEEE
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNK-FIGPIPGRITDLWGLNYLNLSM-NGFKGGFPGNLRNLQQLKVLD  153 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~  153 (261)
                      ....|++++|++++..+..+..+++|++|++++|. +..+.+..|.++++|++|++++ |.++...+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56689999999998778789999999999999997 8877777899999999999998 999977778899999999999


Q ss_pred             cccCccccccchhccCCCCCC---EEecccC-cccccCCccccccccCCCCCcc-EEEcccCccCccCc-cCCCCCCCCE
Q 042660          154 LRKNKLWGDIGGIMSELKNVE---FVDLSFN-RFHGGLGVGADNVSSIANTNLE-VLDLGDNGITGELP-SFGMLPNLKV  227 (261)
Q Consensus       154 l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~~~~l~~~~L~-~L~Ls~n~l~~~~~-~~~~~~~L~~  227 (261)
                      +++|.+.+ +|. +..+++|+   +|++++| .+++..+..+..+.     +|+ +|++++|+++..++ .+.. ++|+.
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-----~L~~~L~l~~n~l~~i~~~~~~~-~~L~~  183 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-----NETLTLKLYNNGFTSVQGYAFNG-TKLDA  183 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-----SSEEEEECCSCCCCEECTTTTTT-CEEEE
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh-----cceeEEEcCCCCCcccCHhhcCC-CCCCE
Confidence            99999977 555 78888888   9999999 88766555566554     458 89999998885555 4444 78889


Q ss_pred             EEcccCc-CcccCcHHHHhCC-CCccEEEccCccCC
Q 042660          228 LRLGSNQ-LFGMIPEELLESV-IPIQELDLSGNGFT  261 (261)
Q Consensus       228 L~L~~n~-l~~~~~~~~~~~~-~~L~~L~L~~N~ls  261 (261)
                      |++++|+ ++ .++...+..+ ++|+.|++++|+++
T Consensus       184 L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          184 VYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             EECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             EEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccc
Confidence            9999985 87 6777777777 78899999888774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=2.4e-23  Score=174.87  Aligned_cols=194  Identities=24%  Similarity=0.260  Sum_probs=133.6

Q ss_pred             CCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEcc
Q 042660           62 CPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLS  131 (261)
Q Consensus        62 c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  131 (261)
                      |.|.|..+.|...          .....|++++|.+++..+..+.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            6678999999642          244589999999998888899999999999999999998889999999999999999


Q ss_pred             CCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccc--cCCccccccccCC-----------
Q 042660          132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG--GLGVGADNVSSIA-----------  198 (261)
Q Consensus       132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~l~-----------  198 (261)
                      +|.++. +|..+.  ++|++|++++|.+....+..+..+++|++|++++|.++.  ..+..+..+ .+.           
T Consensus       111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            999984 665554  789999999999887777778888889999998888852  334333322 110           


Q ss_pred             -----CCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          199 -----NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       199 -----~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                           .++|++|++++|.+++..+ .+..+++|+.|++++|.+++ ++...+..+++|+.|++++|++
T Consensus       187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCC
T ss_pred             cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcC
Confidence                 1244555555555544443 44444444444444444442 2222233334444444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=5.4e-24  Score=190.17  Aligned_cols=180  Identities=18%  Similarity=0.171  Sum_probs=157.9

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ...+|++++|++++..|..+.++++|++|++++|++.+..|..|.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            45699999999998889999999999999999999999888999999999999999999998777779999999999999


Q ss_pred             cCcccc-ccchhccCCCCCCEEecccCcccccCC-ccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEccc
Q 042660          156 KNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLG-VGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGS  232 (261)
Q Consensus       156 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~  232 (261)
                      +|.+.+ ..|..++.+++|++|++++|.+.+.+| ..+..+     ++|++|++++|.+++..| .+..+++|+.|+++.
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL-----TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-----CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc-----cccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            999987 457789999999999999998554554 455555     467999999999998777 888899999999999


Q ss_pred             CcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          233 NQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       233 n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      |.+. .+|..++..+++|+.|++++|+++
T Consensus       182 n~~~-~~~~~~~~~l~~L~~L~L~~n~l~  209 (549)
T 2z81_A          182 SESA-FLLEIFADILSSVRYLELRDTNLA  209 (549)
T ss_dssp             SBST-THHHHHHHSTTTBSEEEEESCBCT
T ss_pred             Cccc-ccchhhHhhcccccEEEccCCccc
Confidence            9886 677777777789999999998764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=6.9e-23  Score=165.52  Aligned_cols=169  Identities=23%  Similarity=0.278  Sum_probs=150.7

Q ss_pred             CcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCc
Q 042660           65 SWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG  134 (261)
Q Consensus        65 ~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  134 (261)
                      .+..+.|...          .....|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            5677777632          234589999999999888899999999999999999999998889999999999999999


Q ss_pred             CcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCc
Q 042660          135 FKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITG  214 (261)
Q Consensus       135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~  214 (261)
                      +++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+.     +|+.|+|++|++++
T Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~  169 (251)
T 3m19_A           95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-----NLQTLSLSTNQLQS  169 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSC
T ss_pred             ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc-----CCCEEECCCCcCCc
Confidence            9987778889999999999999999988888889999999999999999876665666664     56999999999998


Q ss_pred             cCc-cCCCCCCCCEEEcccCcCccc
Q 042660          215 ELP-SFGMLPNLKVLRLGSNQLFGM  238 (261)
Q Consensus       215 ~~~-~~~~~~~L~~L~L~~n~l~~~  238 (261)
                      .++ .+..+++|+.|++++|.+++.
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            887 788999999999999999865

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=3.1e-23  Score=169.75  Aligned_cols=180  Identities=24%  Similarity=0.211  Sum_probs=105.8

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .|++++|.+++..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        56 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  135 (276)
T 2z62_A           56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL  135 (276)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc
Confidence            45555555544444444455555555555555554444445555555555555555554334345555555555555555


Q ss_pred             cccc-cchhccCCCCCCEEecccCcccccCCccccccccCCCCCcc-EEEcccCccCccCccCCCCCCCCEEEcccCcCc
Q 042660          159 LWGD-IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLE-VLDLGDNGITGELPSFGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       159 l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~-~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~  236 (261)
                      +.+. +|..+..+++|++|++++|.+++..+..+..+..+  ..+. .|++++|.+++.++......+|+.|++++|.++
T Consensus       136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~  213 (276)
T 2z62_A          136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM--PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK  213 (276)
T ss_dssp             CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC--TTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS
T ss_pred             cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc--cccceeeecCCCcccccCccccCCCcccEEECCCCcee
Confidence            5442 35555555555555555555554444444444332  1122 677777777766554444458999999999998


Q ss_pred             ccCcHHHHhCCCCccEEEccCccCC
Q 042660          237 GMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       237 ~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                       .+|...+..+++|+.|++++|+++
T Consensus       214 -~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          214 -SVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             -CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             -ecCHhHhcccccccEEEccCCccc
Confidence             677777788889999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.5e-23  Score=164.65  Aligned_cols=171  Identities=27%  Similarity=0.303  Sum_probs=129.9

Q ss_pred             CCCCcceEEcCCCC----------CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEcc
Q 042660           62 CPVSWTGVSCDPES----------GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLS  131 (261)
Q Consensus        62 c~~~~~gv~c~~~~----------~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  131 (261)
                      |.|.|.++.|...+          ...+|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            66799999997422          34478888888886666667788888888888888887766677788888888888


Q ss_pred             CCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCc
Q 042660          132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG  211 (261)
Q Consensus       132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~  211 (261)
                      +|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+     ++|+.|++++|.
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~  159 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-----TSLQYIWLHDNP  159 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSCC
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC-----CCccEEEecCCC
Confidence            888886666667788888888888888877777777888888888888888875555445444     355888888887


Q ss_pred             cCccCccCCCCCCCCEEEcccCcCcccCcHHH
Q 042660          212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEEL  243 (261)
Q Consensus       212 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  243 (261)
                      +.      +.++.|+.|+++.|.++|.+|..+
T Consensus       160 ~~------~~~~~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          160 WD------CTCPGIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             BC------CCTTTTHHHHHHHHHCTTTBBCTT
T ss_pred             ee------cCCCCHHHHHHHHHhCCceeeccC
Confidence            66      345577788888888888887654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=7.6e-23  Score=168.76  Aligned_cols=177  Identities=25%  Similarity=0.203  Sum_probs=155.8

Q ss_pred             CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      .....|++++|.+++..+..+..+++|++|++++|.+++..+.  ..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            3556899999999988889999999999999999999865443  78999999999999998 57888999999999999


Q ss_pred             ccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccC
Q 042660          155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSN  233 (261)
Q Consensus       155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n  233 (261)
                      ++|++++..+..|..+++|++|++++|.+++..+..+..+     ++|+.|+|++|++++.++ .+..+++|+.|++++|
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-----PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-----TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc-----cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence            9999998888999999999999999999987666555555     456999999999997777 6788999999999999


Q ss_pred             cCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          234 QLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      .++ .+|..++. ..+|+.+++++|++.
T Consensus       183 ~l~-~ip~~~~~-~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          183 SLY-TIPKGFFG-SHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCC-CCCTTTTT-TCCCSEEECCSCCBC
T ss_pred             cCC-ccChhhcc-cccCCeEEeCCCCcc
Confidence            998 88888765 468999999999863

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.7e-22  Score=165.13  Aligned_cols=175  Identities=26%  Similarity=0.363  Sum_probs=117.7

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|+++++.++.  .+.+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            34467777776663  22466677777777777777653  356677777777777777776556666777777777777


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCc
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQ  234 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~  234 (261)
                      +|.+.+..+..+..+++|++|++++|.+++..+..+..+.     +|+.|++++|++++.++ .+..+++|+.|++++|.
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-----NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            7777766666677777777777777777655444444443     45777777777776655 46667777777777777


Q ss_pred             CcccCcHHHHhCCCCccEEEccCccC
Q 042660          235 LFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +++ +++..+..+++|+.|++++|++
T Consensus       193 l~~-~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          193 LKS-VPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCc-cCHHHHhCCcCCCEEEccCCCc
Confidence            773 4445555666777777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2.1e-23  Score=170.84  Aligned_cols=179  Identities=26%  Similarity=0.217  Sum_probs=155.8

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ...+|++++|++++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45699999999998888899999999999999999998888889999999999999999998888899999999999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCccccc-CCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCC----EEE
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGG-LGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLK----VLR  229 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~----~L~  229 (261)
                      +|.+.+..+..+..+++|++|++++|.+++. +|..+..+.     +|++|++++|++++.++ .+..+.+|+    .|+
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~  183 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  183 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEE
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC-----CCCEEECCCCCCCcCCHHHhhhhhhccccceeee
Confidence            9999888777899999999999999999863 577777664     56999999999998766 666666666    899


Q ss_pred             cccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          230 LGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +++|.++ .++...+.. .+|+.|++++|.++
T Consensus       184 ls~n~l~-~~~~~~~~~-~~L~~L~L~~n~l~  213 (276)
T 2z62_A          184 LSLNPMN-FIQPGAFKE-IRLKELALDTNQLK  213 (276)
T ss_dssp             CCSSCCC-EECTTSSCS-CCEEEEECCSSCCS
T ss_pred             cCCCccc-ccCccccCC-CcccEEECCCCcee
Confidence            9999998 555555443 48999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=3.6e-23  Score=171.85  Aligned_cols=179  Identities=24%  Similarity=0.325  Sum_probs=156.2

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCC-ccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      ....|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        79 ~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             CCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             ccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            4558889998888 467778999999999999999997665 67899999999999999999888899999999999999


Q ss_pred             ccCcccc-ccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEccc
Q 042660          155 RKNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGS  232 (261)
Q Consensus       155 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~  232 (261)
                      ++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+.     +|++|++++|.+++..+ .+..+++|+.|++++
T Consensus       158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  232 (306)
T 2z66_A          158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-----SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  232 (306)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred             CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-----CCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence            9999987 6888999999999999999999987777776664     56999999999998777 788999999999999


Q ss_pred             CcCcccCcHHHHhCC-CCccEEEccCccCC
Q 042660          233 NQLFGMIPEELLESV-IPIQELDLSGNGFT  261 (261)
Q Consensus       233 n~l~~~~~~~~~~~~-~~L~~L~L~~N~ls  261 (261)
                      |.+++..+..+ ..+ .+|+.|++++|+++
T Consensus       233 N~l~~~~~~~~-~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          233 NHIMTSKKQEL-QHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             SCCCBCSSSSC-CCCCTTCCEEECTTCCEE
T ss_pred             CCCcccCHHHH-HhhhccCCEEEccCCCee
Confidence            99997666554 444 48999999999863

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=8.9e-23  Score=178.25  Aligned_cols=127  Identities=22%  Similarity=0.199  Sum_probs=82.0

Q ss_pred             CCCCcceEEcCCC---------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCC-CccccCCCCCCEEEcc
Q 042660           62 CPVSWTGVSCDPE---------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPI-PGRITDLWGLNYLNLS  131 (261)
Q Consensus        62 c~~~~~gv~c~~~---------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~  131 (261)
                      |.|....+.|...         .....|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|.++++|++|+++
T Consensus         8 c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A            8 CSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             CEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             eEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            5445555777642         23457888888888777777777777777777777776433 4556777777777777


Q ss_pred             CCcCcCCCCccccCCCCCCEEEcccCccccccchh--ccCCCCCCEEecccCcccccCC
Q 042660          132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGI--MSELKNVEFVDLSFNRFHGGLG  188 (261)
Q Consensus       132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p  188 (261)
                      +|.+++..|..++++++|++|++++|.+.+..+..  +..+++|++|++++|.+++..|
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  146 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP  146 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc
Confidence            77776666666666666666666666665533332  5555555555555555554434

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=1.6e-22  Score=176.62  Aligned_cols=131  Identities=27%  Similarity=0.269  Sum_probs=92.6

Q ss_pred             CCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccE
Q 042660          125 LNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV  204 (261)
Q Consensus       125 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~  204 (261)
                      |++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+     ++|++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~  351 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL-----DKLEV  351 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC-----TTCCE
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc-----ccCCE
Confidence            3333333333333345555666666666666666666666666666777777777777665555555444     45699


Q ss_pred             EEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          205 LDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       205 L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      |++++|++++..| .+..+++|++|++++|.++ .+|.+.+..+++|+.|++++|+++
T Consensus       352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcc
Confidence            9999999988777 7888999999999999998 577777777889999999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.3e-22  Score=164.97  Aligned_cols=175  Identities=24%  Similarity=0.268  Sum_probs=152.3

Q ss_pred             CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      ....++++++++++. +|..+.  +.+++|++++|.+.+..+..|..+++|++|++++|.+++. +.. ..+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEEC
T ss_pred             CCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEEC
Confidence            456688999999984 555543  6899999999999988889999999999999999999864 332 78999999999


Q ss_pred             ccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccC
Q 042660          155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSN  233 (261)
Q Consensus       155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n  233 (261)
                      ++|.+. .+|..+..+++|++|++++|.+++..+..+..+.     +|++|++++|++++.++ .+..+++|+.|++++|
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-----ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----CCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            999996 6677889999999999999999977667777664     56999999999998777 6889999999999999


Q ss_pred             cCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          234 QLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +++ .+|...+..+++|+.|++++|+++
T Consensus       159 ~l~-~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          159 NLT-ELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CCS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCC-ccCHHHhcCcCCCCEEECCCCcCC
Confidence            998 788888888899999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=2.6e-22  Score=172.18  Aligned_cols=107  Identities=20%  Similarity=0.117  Sum_probs=81.1

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.++...+..|..+++|++|++++|.
T Consensus        73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  152 (390)
T 3o6n_A           73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN  152 (390)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence            67777777776666677777788888888888777777777778888888888888775444446777888888888888


Q ss_pred             cccccchhccCCCCCCEEecccCcccc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHG  185 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (261)
                      +.+..+..+..+++|++|++++|.+++
T Consensus       153 l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          153 LERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             cCccChhhccCCCCCCEEECCCCcCCc
Confidence            877777777778888888888887764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=1.6e-22  Score=169.73  Aligned_cols=175  Identities=21%  Similarity=0.242  Sum_probs=136.3

Q ss_pred             eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccC---------CCCCCEEEccCCcCcCCCCccccCCC
Q 042660           77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITD---------LWGLNYLNLSMNGFKGGFPGNLRNLQ  147 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~p~~~~~l~  147 (261)
                      ...|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..         +++|++|++++|.++ .+|..++.++
T Consensus       129 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~  206 (328)
T 4fcg_A          129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ  206 (328)
T ss_dssp             CSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT
T ss_pred             CCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC
Confidence            346677777776 55666777777777777776666666665543         777777777777777 5677777788


Q ss_pred             CCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCC
Q 042660          148 QLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLK  226 (261)
Q Consensus       148 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~  226 (261)
                      +|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..+.     +|++|++++|.+.+..| .+..+++|+
T Consensus       207 ~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-----~L~~L~L~~n~~~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          207 NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-----PLKRLILKDCSNLLTLPLDIHRLTQLE  280 (328)
T ss_dssp             TCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC-----CCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred             CCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCC-----CCCEEECCCCCchhhcchhhhcCCCCC
Confidence            88888888888865 455677888888888888888888877776664     56999999999998888 889999999


Q ss_pred             EEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          227 VLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       227 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      .|++++|.+.+.+|..+ ..+++++.+++..|.+
T Consensus       281 ~L~L~~n~~~~~iP~~l-~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          281 KLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EEECTTCTTCCCCCGGG-GGSCTTCEEECCGGGS
T ss_pred             EEeCCCCCchhhccHHH-hhccCceEEeCCHHHH
Confidence            99999999999999776 4578999999987754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=6.2e-22  Score=162.78  Aligned_cols=174  Identities=20%  Similarity=0.153  Sum_probs=131.8

Q ss_pred             EEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660           78 VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN  157 (261)
Q Consensus        78 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  157 (261)
                      +.++.++++++. +|..+  .+++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            456777777774 45433  468999999999999888888999999999999999999878999999999999999999


Q ss_pred             c-cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcC
Q 042660          158 K-LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQL  235 (261)
Q Consensus       158 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l  235 (261)
                      . +....+..+..+++|++|++++|.+++..|..+..+..     |++|++++|++++.++ .+..+++|+.|++++|.+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-----L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-----LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-----CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC-----CCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            7 87777889999999999999999999777776666644     4666666666665444 455566666666666666


Q ss_pred             cccCcHHHHhCCCCccEEEccCccC
Q 042660          236 FGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       236 ~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      + .++...+..+++|+.|++++|.+
T Consensus       166 ~-~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          166 S-SVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             C-EECTTTTTTCTTCCEEECCSSCC
T ss_pred             c-ccCHHHhcCccccCEEECCCCcc
Confidence            5 34444344445555555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.89  E-value=2.6e-22  Score=170.58  Aligned_cols=173  Identities=26%  Similarity=0.205  Sum_probs=140.9

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCcccc-CCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRIT-DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN  157 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  157 (261)
                      .+++++++++. +|..+.  ..++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            35556666764 555443  3588999999999988888787 8999999999999999877788999999999999999


Q ss_pred             ccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cC---CCCCCCCEEEcccC
Q 042660          158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SF---GMLPNLKVLRLGSN  233 (261)
Q Consensus       158 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~---~~~~~L~~L~L~~n  233 (261)
                      ++....+..|..+++|++|++++|.+++..|..+..+.     +|+.|+|++|++++.++ .+   ..+++|+.|+|++|
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            99888888899999999999999999877777777664     56999999999997666 44   56889999999999


Q ss_pred             cCcccCcHHHHhCCCC--ccEEEccCccC
Q 042660          234 QLFGMIPEELLESVIP--IQELDLSGNGF  260 (261)
Q Consensus       234 ~l~~~~~~~~~~~~~~--L~~L~L~~N~l  260 (261)
                      .|+ .+|...+..++.  ++.|++++|++
T Consensus       174 ~l~-~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          174 KLK-KLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCC-CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CCC-ccCHHHhhhccHhhcceEEecCCCc
Confidence            998 677776666664  58899999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=7.9e-23  Score=173.15  Aligned_cols=186  Identities=19%  Similarity=0.226  Sum_probs=154.1

Q ss_pred             CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCEEE
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLKVLD  153 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~  153 (261)
                      .....|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.++...+ ..+..+++|++|+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~  155 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR  155 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence            355689999999998888889999999999999999997666668999999999999999986433 4788999999999


Q ss_pred             cccC-ccccccchhccCCCCCCEEecccCcccccCCccccccccCC-------------------CCCccEEEcccCccC
Q 042660          154 LRKN-KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-------------------NTNLEVLDLGDNGIT  213 (261)
Q Consensus       154 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------------~~~L~~L~Ls~n~l~  213 (261)
                      +++| .+....+..+..+++|++|++++|.+++..|..+..+..+.                   .++|+.|++++|.++
T Consensus       156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence            9998 46666678889999999999999999887777776654432                   357788888888887


Q ss_pred             ccCc--------------------------------cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          214 GELP--------------------------------SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       214 ~~~~--------------------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +..+                                .+..+++|+.|++++|.++ .+|..++..+++|+.|++++|+++
T Consensus       236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence            6332                                2456788999999999998 788888788889999999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=4.3e-23  Score=172.00  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=55.5

Q ss_pred             eEEEEcCCCCccccCcccc--cCCCCCCEEECcCCcCcCCCCccccCC-----CCCCEEEccCCcCcCCCCccccCCCCC
Q 042660           77 SVNLSLSGNNFTGRIVPAL--GSISSLQYLDLSNNKFIGPIPGRITDL-----WGLNYLNLSMNGFKGGFPGNLRNLQQL  149 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L  149 (261)
                      ..+|++++|.+++.+|..+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+++..|..++.+++|
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence            3355555555555555544  5555555555555555544 4444443     555555555555555444555555555


Q ss_pred             CEEEcccCccccc--cchhc--cCCCCCCEEecccCccc
Q 042660          150 KVLDLRKNKLWGD--IGGIM--SELKNVEFVDLSFNRFH  184 (261)
Q Consensus       150 ~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~  184 (261)
                      ++|++++|++.+.  .+..+  ..+++|++|++++|.++
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            5555555554433  12222  44455555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=7.1e-22  Score=178.39  Aligned_cols=108  Identities=19%  Similarity=0.106  Sum_probs=86.1

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .|++++|.+++..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..|+.+++|++|++++|.
T Consensus        79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~  158 (597)
T 3oja_B           79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN  158 (597)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence            67788888877777778888888888888888887777777888888888888888886555556788888888888888


Q ss_pred             cccccchhccCCCCCCEEecccCccccc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGG  186 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~  186 (261)
                      +.+..|..+..+++|++|++++|.+++.
T Consensus       159 l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          159 LERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            8887777888888888888888877653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.88  E-value=1.7e-21  Score=155.32  Aligned_cols=159  Identities=25%  Similarity=0.277  Sum_probs=134.0

Q ss_pred             CCCCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc
Q 042660           62 CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG  141 (261)
Q Consensus        62 c~~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  141 (261)
                      |.|+|.+|.|..           ++++ .+|..+.  ++|++|++++|.+.+..|..|..+++|++|++++|.++...+.
T Consensus        17 ~~Cs~~~v~c~~-----------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~   82 (229)
T 3e6j_A           17 CSCSGTTVDCRS-----------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG   82 (229)
T ss_dssp             CEEETTEEECTT-----------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CEEeCCEeEccC-----------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh
Confidence            566999998863           3343 3444433  7899999999999998899999999999999999999876667


Q ss_pred             cccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCC
Q 042660          142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFG  220 (261)
Q Consensus       142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~  220 (261)
                      .|..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+.     +|+.|+|++|++++.++ .+.
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~  156 (229)
T 3e6j_A           83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT-----HLTHLALDQNQLKSIPHGAFD  156 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT-----TCSEEECCSSCCCCCCTTTTT
T ss_pred             hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC-----CCCEEECCCCcCCccCHHHHh
Confidence            7889999999999999998888888899999999999999998 6677665554     56999999999998777 688


Q ss_pred             CCCCCCEEEcccCcCcccCc
Q 042660          221 MLPNLKVLRLGSNQLFGMIP  240 (261)
Q Consensus       221 ~~~~L~~L~L~~n~l~~~~~  240 (261)
                      .+++|+.|++++|.+.+..+
T Consensus       157 ~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          157 RLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TCTTCCEEECTTSCBCTTBG
T ss_pred             CCCCCCEEEeeCCCccCCcc
Confidence            89999999999999986554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.88  E-value=1.7e-22  Score=182.61  Aligned_cols=178  Identities=24%  Similarity=0.216  Sum_probs=155.7

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ...+|++++|.+++..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  112 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV  112 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence            45699999999998888899999999999999999998889999999999999999999998889999999999999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccc-cCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCC----CEEE
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHG-GLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNL----KVLR  229 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L----~~L~  229 (261)
                      +|.+.+..+..++.+++|++|++++|.+.+ .+|..+..+.     +|++|++++|++++..+ .+..+.+|    ..|+
T Consensus       113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~  187 (606)
T 3vq2_A          113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-----NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD  187 (606)
T ss_dssp             TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-----TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred             CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-----CCCEEEccCCcceecChhhhhhhhccccccceee
Confidence            999988888889999999999999999986 5688777775     55999999999998777 66665554    4899


Q ss_pred             cccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          230 LGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +++|.++ .++...+... +|+.|++++|.+
T Consensus       188 l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~  216 (606)
T 3vq2_A          188 MSLNPID-FIQDQAFQGI-KLHELTLRGNFN  216 (606)
T ss_dssp             CTTCCCC-EECTTTTTTC-EEEEEEEESCCS
T ss_pred             ccCCCcc-eeCcccccCc-eeeeeeccCCcc
Confidence            9999998 5666666544 899999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=5.1e-22  Score=162.30  Aligned_cols=159  Identities=26%  Similarity=0.308  Sum_probs=141.5

Q ss_pred             CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      .....|++++|.+++.  +.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            4566899999999873  47889999999999999999888888999999999999999999877778899999999999


Q ss_pred             ccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccC
Q 042660          155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSN  233 (261)
Q Consensus       155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n  233 (261)
                      ++|.+.+..+..+..+++|++|++++|.+++..+..+..+.     +|+.|++++|.+++.++ .+..+++|+.|++++|
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-----QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc-----cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            99999988888899999999999999999876666566554     56999999999998888 6889999999999999


Q ss_pred             cCcccCc
Q 042660          234 QLFGMIP  240 (261)
Q Consensus       234 ~l~~~~~  240 (261)
                      .+.+..|
T Consensus       216 ~~~~~~~  222 (272)
T 3rfs_A          216 PWDCTCP  222 (272)
T ss_dssp             CBCCCTT
T ss_pred             CccccCc
Confidence            9986554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=9e-22  Score=171.47  Aligned_cols=179  Identities=21%  Similarity=0.229  Sum_probs=123.6

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus        89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~  168 (440)
T 3zyj_A           89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG  168 (440)
T ss_dssp             SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence            45588999999988778888889999999999999987777788888899999999888886556566667777777776


Q ss_pred             cCc-cccccchhccCCCCCCEEecccCcc----------------------cccCCccccccccCCCCCccEEEcccCcc
Q 042660          156 KNK-LWGDIGGIMSELKNVEFVDLSFNRF----------------------HGGLGVGADNVSSIANTNLEVLDLGDNGI  212 (261)
Q Consensus       156 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l----------------------~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l  212 (261)
                      +|. +....+..+..+++|++|++++|.+                      ++..|..+..+     ++|+.|++++|++
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~n~l  243 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL-----MHLQKLWMIQSQI  243 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTC-----TTCCEEECTTCCC
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccC-----ccCCEEECCCCce
Confidence            633 3333333455555555555555554                      44334333333     3456666666666


Q ss_pred             CccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          213 TGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       213 ~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      ++..+ .+..+++|+.|+|++|.++ .++.+.+..+++|+.|++++|++
T Consensus       244 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred             eEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence            66555 5666777777777777776 56666666666777777777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=1.6e-21  Score=154.50  Aligned_cols=160  Identities=23%  Similarity=0.274  Sum_probs=127.1

Q ss_pred             CCCCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc
Q 042660           62 CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG  141 (261)
Q Consensus        62 c~~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  141 (261)
                      |.|.|..+.|.           +++++ .+|..+.  +.+++|++++|.+.++.+..|..+++|++|++++|.+++..|.
T Consensus         9 C~C~~~~v~c~-----------~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~   74 (220)
T 2v9t_B            9 CTCSNNIVDCR-----------GKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD   74 (220)
T ss_dssp             SEEETTEEECT-----------TSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             CEECCCEEEcC-----------CCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence            66677766664           44555 3454443  5788999999998887777888888999999999998887788


Q ss_pred             cccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCC
Q 042660          142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFG  220 (261)
Q Consensus       142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~  220 (261)
                      .|.++++|++|++++|.+....+..|..+++|++|++++|.+++..|..+..+.     +|+.|+|++|.+++.++ .+.
T Consensus        75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~  149 (220)
T 2v9t_B           75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-----NLNLLSLYDNKLQTIAKGTFS  149 (220)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTT
T ss_pred             HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC-----CCCEEECCCCcCCEECHHHHh
Confidence            888899999999999998877777788889999999999998877777666664     45899999999988777 688


Q ss_pred             CCCCCCEEEcccCcCcccCc
Q 042660          221 MLPNLKVLRLGSNQLFGMIP  240 (261)
Q Consensus       221 ~~~~L~~L~L~~n~l~~~~~  240 (261)
                      .+++|+.|++++|.+.....
T Consensus       150 ~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          150 PLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             TCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCEEEeCCCCcCCCCc
Confidence            88889999999998864433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=1.1e-21  Score=172.57  Aligned_cols=110  Identities=23%  Similarity=0.160  Sum_probs=76.0

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ...+|++++|.+++..|..+.++++|++|++++|.+....+..|.++++|++|++++|.+++..|..|..+++|+.|+++
T Consensus        57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~  136 (477)
T 2id5_A           57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG  136 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred             CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence            44577777777777667777777777777777777776666666777777777777777766666666666777777777


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccc
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHG  185 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (261)
                      +|.+.+..+..+..+++|+.|++++|.+++
T Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A          137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             CTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred             CCccceeChhhccCCCCCCEEECCCCcCcc
Confidence            666666666666666666666666666553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=9.2e-22  Score=171.96  Aligned_cols=177  Identities=23%  Similarity=0.180  Sum_probs=137.6

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|.+++..+..+.++++|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus       100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  179 (452)
T 3zyi_A          100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG  179 (452)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence            45589999999998888888899999999999999987777778888999999999988876555455555555555555


Q ss_pred             c-------------------------CccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccC
Q 042660          156 K-------------------------NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDN  210 (261)
Q Consensus       156 ~-------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n  210 (261)
                      +                         |.+.+. | .+..+++|+.|++++|.+++..|..+..+     ++|+.|++++|
T Consensus       180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~n  252 (452)
T 3zyi_A          180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGL-----SSLKKLWVMNS  252 (452)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTC-----TTCCEEECTTS
T ss_pred             CCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCc-----cCCCEEEeCCC
Confidence            4                         444332 1 24455566666666666665555555555     46799999999


Q ss_pred             ccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          211 GITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       211 ~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      ++++..+ .+..+++|+.|+|++|.++ .++.+.+..+++|+.|++++|++
T Consensus       253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          253 QVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCc
Confidence            9998878 8999999999999999998 78888888888999999999986

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.88  E-value=1.6e-21  Score=154.42  Aligned_cols=157  Identities=22%  Similarity=0.176  Sum_probs=131.3

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCC-ccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN  157 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  157 (261)
                      .+++++|.++. +|..+.  ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            45666777774 565543  356899999999997755 45789999999999999999877778999999999999999


Q ss_pred             ccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCc
Q 042660          158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       158 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~  236 (261)
                      .+.+..+..+..+++|++|++++|.+++..|..+..+.     +|+.|+|++|++++..| .+..+++|+.|++++|.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-----SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-----TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-----cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            99988888899999999999999999987787777664     56999999999998877 8889999999999999998


Q ss_pred             ccCcHHH
Q 042660          237 GMIPEEL  243 (261)
Q Consensus       237 ~~~~~~~  243 (261)
                      +..+..+
T Consensus       167 c~c~l~~  173 (220)
T 2v70_A          167 CNCYLAW  173 (220)
T ss_dssp             CSGGGHH
T ss_pred             CCCchHH
Confidence            6665443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.88  E-value=5.9e-22  Score=179.05  Aligned_cols=166  Identities=18%  Similarity=0.088  Sum_probs=131.7

Q ss_pred             cceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcC
Q 042660           66 WTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGF  135 (261)
Q Consensus        66 ~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  135 (261)
                      +..+.|...          .....|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            456777532          2455999999999988899999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc
Q 042660          136 KGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE  215 (261)
Q Consensus       136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~  215 (261)
                      ++..|..|+++++|++|++++|.+.+..+..++.+++|++|++++|.+.+.....+..+     ++|++|++++|.+++.
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-----EKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC-----TTCCEEECCSSCCCEE
T ss_pred             cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCC-----cccCEEEcccCccccc
Confidence            98889999999999999999999988878889999999999999999986332222223     3456777776666655


Q ss_pred             Cc-cCCCCCCCC--EEEcccCcCc
Q 042660          216 LP-SFGMLPNLK--VLRLGSNQLF  236 (261)
Q Consensus       216 ~~-~~~~~~~L~--~L~L~~n~l~  236 (261)
                      .+ .+..+++|+  .|++++|.++
T Consensus       169 ~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          169 SKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             CHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             ChhhhhhhcccceeEEecCCCccC
Confidence            44 455555555  5555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=4.4e-22  Score=181.00  Aligned_cols=184  Identities=18%  Similarity=0.315  Sum_probs=129.5

Q ss_pred             CCeEEEEcCCCCcccc-----------------Cccccc--CCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCc-
Q 042660           75 SGSVNLSLSGNNFTGR-----------------IVPALG--SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG-  134 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-  134 (261)
                      .....|++++|.+++.                 +|+.+.  ++++|++|++++|.+.+.+|..+.++++|++|++++|. 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            3556899999999885                 888888  89999999999999988899888899999999999998 


Q ss_pred             CcC-CCCccccCC------CCCCEEEcccCccccccch--hccCCCCCCEEecccCcccccCCccccccccCC-------
Q 042660          135 FKG-GFPGNLRNL------QQLKVLDLRKNKLWGDIGG--IMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-------  198 (261)
Q Consensus       135 l~~-~~p~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-------  198 (261)
                      +++ .+|..++.+      ++|++|++++|.+. .+|.  .++.+++|++|++++|.++|.+| .+..+..+.       
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN  363 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred             CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence            877 677766665      77777777777776 6666  67777777777777777776666 444333322       


Q ss_pred             -----------CCC-ccEEEcccCccC-------------------------ccCc-cCC-------CCCCCCEEEcccC
Q 042660          199 -----------NTN-LEVLDLGDNGIT-------------------------GELP-SFG-------MLPNLKVLRLGSN  233 (261)
Q Consensus       199 -----------~~~-L~~L~Ls~n~l~-------------------------~~~~-~~~-------~~~~L~~L~L~~n  233 (261)
                                 .++ |++|++++|.++                         +..| .+.       ..++|+.|++++|
T Consensus       364 ~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N  443 (636)
T 4eco_A          364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN  443 (636)
T ss_dssp             EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred             ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence                       123 455555555444                         4333 333       4445666666666


Q ss_pred             cCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          234 QLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      .++ .+|..++..+++|+.|++++|.++
T Consensus       444 ~l~-~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          444 QIS-KFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence            666 566666666667777777777653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=1.1e-21  Score=177.24  Aligned_cols=175  Identities=21%  Similarity=0.230  Sum_probs=117.1

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCC-ccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN  157 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  157 (261)
                      .|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus       380 ~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          380 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             EEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             EeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence            45555555543 33555666666666666666666555 45666677777777777776666666777777777777777


Q ss_pred             cccc-ccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcC
Q 042660          158 KLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQL  235 (261)
Q Consensus       158 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l  235 (261)
                      .+.+ ..|..++.+++|++|++++|.+++..|..+..+.     +|++|++++|++++..| .+..+++|+.|++++|.+
T Consensus       459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-----RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred             cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc-----cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence            7765 3566667777777777777777766666555553     45777777777777666 677777778888888777


Q ss_pred             cccCcHHHHhCCC-CccEEEccCccCC
Q 042660          236 FGMIPEELLESVI-PIQELDLSGNGFT  261 (261)
Q Consensus       236 ~~~~~~~~~~~~~-~L~~L~L~~N~ls  261 (261)
                      + .+|.. +..++ +|+.|++++|+++
T Consensus       534 ~-~~p~~-~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          534 E-TSKGI-LQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             C-CEESC-GGGSCTTCCEEECCSCCCC
T ss_pred             c-ccCHh-HhhhcccCcEEEccCCCcc
Confidence            7 66666 33444 5778888877763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=2.8e-22  Score=167.06  Aligned_cols=176  Identities=23%  Similarity=0.263  Sum_probs=145.5

Q ss_pred             CCeEEEEcCCCCccccCcccccCC-----CCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCC--CCccc--cC
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSI-----SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG--FPGNL--RN  145 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~~  145 (261)
                      .....|++++|++++. |..+..+     ++|++|++++|.+.+..+..|..+++|++|++++|.+.+.  .|..+  ..
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            3566899999999987 7777776     8999999999999998889999999999999999998764  34444  88


Q ss_pred             CCCCCEEEcccCcccc---ccchhccCCCCCCEEecccCcccccCCc-cccccccCCCCCccEEEcccCccCccCccCCC
Q 042660          146 LQQLKVLDLRKNKLWG---DIGGIMSELKNVEFVDLSFNRFHGGLGV-GADNVSSIANTNLEVLDLGDNGITGELPSFGM  221 (261)
Q Consensus       146 l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~  221 (261)
                      +++|++|++++|.+.+   .....+..+++|++|++++|.+++..|. .+..+     ++|++|++++|.++..+..+. 
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l-----~~L~~L~Ls~N~l~~ip~~~~-  273 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP-----SQLNSLNLSFTGLKQVPKGLP-  273 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC-----TTCCEEECTTSCCSSCCSSCC-
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc-----CCCCEEECCCCccChhhhhcc-
Confidence            9999999999999973   2334557889999999999999876642 22222     577999999999994444554 


Q ss_pred             CCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          222 LPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       222 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                       ++|+.|++++|++++ +|.  +..+++|+.|++++|+++
T Consensus       274 -~~L~~L~Ls~N~l~~-~p~--~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDR-NPS--PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             -SEEEEEECCSSCCCS-CCC--TTTSCEEEEEECTTCTTT
T ss_pred             -CCceEEECCCCCCCC-Chh--HhhCCCCCEEeccCCCCC
Confidence             889999999999995 455  667889999999999985

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.87  E-value=1.9e-21  Score=177.93  Aligned_cols=175  Identities=25%  Similarity=0.194  Sum_probs=146.3

Q ss_pred             CCCCcceEEcCC----------CCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEcc
Q 042660           62 CPVSWTGVSCDP----------ESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLS  131 (261)
Q Consensus        62 c~~~~~gv~c~~----------~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  131 (261)
                      |.|.+..+.|..          ......|++++|.+++..+..+.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus         2 C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             --CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred             ceeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence            455566666643          1345689999999998888889999999999999999999999999999999999999


Q ss_pred             CCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCc
Q 042660          132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG  211 (261)
Q Consensus       132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~  211 (261)
                      +|.++...+..|+++++|++|++++|.+.+..+..++++++|++|++++|.+++..|..+..+.     +|++|++++|.
T Consensus        82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~  156 (680)
T 1ziw_A           82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE-----NLQELLLSNNK  156 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT-----TCCEEECCSSC
T ss_pred             CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccc-----cCCEEEccCCc
Confidence            9999976566799999999999999999888888999999999999999999887777766654     56999999999


Q ss_pred             cCccCc-cC--CCCCCCCEEEcccCcCcccCcH
Q 042660          212 ITGELP-SF--GMLPNLKVLRLGSNQLFGMIPE  241 (261)
Q Consensus       212 l~~~~~-~~--~~~~~L~~L~L~~n~l~~~~~~  241 (261)
                      +++..+ .+  ...++|+.|++++|.+++..|.
T Consensus       157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             ccccCHHHhhccccccccEEECCCCcccccChh
Confidence            988776 33  3567899999999999854443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.87  E-value=6.3e-21  Score=163.52  Aligned_cols=178  Identities=20%  Similarity=0.146  Sum_probs=117.5

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|.+++..|..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A           94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence            44578888888887777778888888888888888886555556788888888888888887667777888888888888


Q ss_pred             cCccccccch-----------------------------------------------------------hccCCCCCCEE
Q 042660          156 KNKLWGDIGG-----------------------------------------------------------IMSELKNVEFV  176 (261)
Q Consensus       156 ~n~l~~~~~~-----------------------------------------------------------~~~~l~~L~~L  176 (261)
                      +|.+.+....                                                           .+..+++|++|
T Consensus       174 ~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L  253 (390)
T 3o6n_A          174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV  253 (390)
T ss_dssp             SSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             CCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEE
Confidence            8777543221                                                           23334555666


Q ss_pred             ecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEcc
Q 042660          177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS  256 (261)
Q Consensus       177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~  256 (261)
                      ++++|.+++..|..+..+.     +|++|++++|++++.+..+..+++|+.|++++|.++ .+|..+ ..+++|+.|+++
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~L~  326 (390)
T 3o6n_A          254 DLSYNELEKIMYHPFVKMQ-----RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLD  326 (390)
T ss_dssp             ECCSSCCCEEESGGGTTCS-----SCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECC
T ss_pred             ECCCCcCCCcChhHccccc-----cCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccc-cccCcCCEEECC
Confidence            6666665555454444443     446666666666654334555666666666666666 455443 234556666666


Q ss_pred             CccC
Q 042660          257 GNGF  260 (261)
Q Consensus       257 ~N~l  260 (261)
                      +|++
T Consensus       327 ~N~i  330 (390)
T 3o6n_A          327 HNSI  330 (390)
T ss_dssp             SSCC
T ss_pred             CCcc
Confidence            6655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=6.2e-21  Score=172.24  Aligned_cols=178  Identities=20%  Similarity=0.146  Sum_probs=129.6

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|.+++..|..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus       100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            44589999999998888888999999999999999997777777889999999999999988788888889999999998


Q ss_pred             cCccccccch-----------------------------------------------------------hccCCCCCCEE
Q 042660          156 KNKLWGDIGG-----------------------------------------------------------IMSELKNVEFV  176 (261)
Q Consensus       156 ~n~l~~~~~~-----------------------------------------------------------~~~~l~~L~~L  176 (261)
                      +|.+.+....                                                           .+..+++|+.|
T Consensus       180 ~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L  259 (597)
T 3oja_B          180 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV  259 (597)
T ss_dssp             TSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             CCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEE
Confidence            8887654222                                                           23445566666


Q ss_pred             ecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEcc
Q 042660          177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS  256 (261)
Q Consensus       177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~  256 (261)
                      ++++|.+++..|..+..+.     +|+.|+|++|.+++.++.+..+++|+.|+|++|.++ .+|..+ ..+++|+.|+++
T Consensus       260 ~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~l~~L~~L~L~  332 (597)
T 3oja_B          260 DLSYNELEKIMYHPFVKMQ-----RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLD  332 (597)
T ss_dssp             ECCSSCCCEEESGGGTTCS-----SCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECC
T ss_pred             ECCCCccCCCCHHHhcCcc-----CCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCccc-ccCCCCCEEECC
Confidence            6666666665555555543     447777777777655445566677777777777776 566554 334566666666


Q ss_pred             CccC
Q 042660          257 GNGF  260 (261)
Q Consensus       257 ~N~l  260 (261)
                      +|.+
T Consensus       333 ~N~l  336 (597)
T 3oja_B          333 HNSI  336 (597)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            6665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=2.2e-21  Score=175.32  Aligned_cols=175  Identities=23%  Similarity=0.244  Sum_probs=89.6

Q ss_pred             EEEcCCCCccccC--cccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCcc-ccCCCCCCEEEcc
Q 042660           79 NLSLSGNNFTGRI--VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGN-LRNLQQLKVLDLR  155 (261)
Q Consensus        79 ~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~  155 (261)
                      +|++++|.+.+..  +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|.. +..+++|++|+++
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS  433 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence            5566666555443  445555555555555555555555555555555555555555555433322 4555555555555


Q ss_pred             cCccccccchhccCCCCCCEEecccCccc---------------------------ccCCccccccccCCCCCccEEEcc
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFH---------------------------GGLGVGADNVSSIANTNLEVLDLG  208 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------------~~~p~~~~~~~~l~~~~L~~L~Ls  208 (261)
                      +|.+.+..|..+..+++|++|++++|.+.                           +..|..+..+.     +|+.|+++
T Consensus       434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls  508 (606)
T 3t6q_A          434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK-----MMNHVDLS  508 (606)
T ss_dssp             TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECC
T ss_pred             CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc-----CCCEEECC
Confidence            55555555555555555555555555554                           33333333332     33555555


Q ss_pred             cCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          209 DNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       209 ~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +|++++..| .+..++.| .|++++|.+++ ++++.+..+++|+.+++++|++
T Consensus       509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          509 HNRLTSSSIEALSHLKGI-YLNLASNHISI-ILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             SSCCCGGGGGGGTTCCSC-EEECCSSCCCC-CCGGGHHHHHTSSEEECTTCCE
T ss_pred             CCccCcCChhHhCccccc-EEECcCCcccc-cCHhhcccCCCCCEEeCCCCCc
Confidence            555554444 44555555 55555555552 3333333344555555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=172.50  Aligned_cols=158  Identities=25%  Similarity=0.260  Sum_probs=126.3

Q ss_pred             cCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcC--CCCccccCCCCCCEEEcccCccccccch-hccCCCC
Q 042660           96 GSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG--GFPGNLRNLQQLKVLDLRKNKLWGDIGG-IMSELKN  172 (261)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  172 (261)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            567778888888888887778788888888888888888875  4556777888888888888888774554 4777788


Q ss_pred             CCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccE
Q 042660          173 VEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE  252 (261)
Q Consensus       173 L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  252 (261)
                      |++|++++|.+++..|..+.       ++|+.|++++|+++..++.+..+++|+.|++++|.++ .+|...+..+++|+.
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~-------~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~  472 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP-------PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK  472 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC-------TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCEEECcCCCCCcchhhhhc-------ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccE
Confidence            88888888888766555432       4679999999999955446678999999999999998 788876777889999


Q ss_pred             EEccCccCC
Q 042660          253 LDLSGNGFT  261 (261)
Q Consensus       253 L~L~~N~ls  261 (261)
                      |++++|+++
T Consensus       473 L~l~~N~~~  481 (520)
T 2z7x_B          473 IWLHTNPWD  481 (520)
T ss_dssp             EECCSSCBC
T ss_pred             EECcCCCCc
Confidence            999999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.86  E-value=1.2e-20  Score=172.60  Aligned_cols=183  Identities=23%  Similarity=0.302  Sum_probs=99.8

Q ss_pred             eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCC-ccccCCCCCCEEEccCCc---------------------
Q 042660           77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNG---------------------  134 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~---------------------  134 (261)
                      ...|++++|++++..|..+..+++|++|++++|.+.+.+| ..+.++++|++|++++|.                     
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence            3355555555555555555555555555555555543332 334444444444444444                     


Q ss_pred             ---Cc--CCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccc---cCCCCCccEEE
Q 042660          135 ---FK--GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVS---SIANTNLEVLD  206 (261)
Q Consensus       135 ---l~--~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~---~l~~~~L~~L~  206 (261)
                         ++  +..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+....   ....++|+.|+
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN  542 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred             cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence               33  23455666667777777777777666666667777777777777776643221110000   00113456666


Q ss_pred             cccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          207 LGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       207 Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +++|+++..++ .+..+++|+.|++++|.++ .+|...|..+++|+.|++++|++
T Consensus       543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcC
Confidence            66666664444 4566666666666666665 45555555555666666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=4.6e-21  Score=171.90  Aligned_cols=158  Identities=25%  Similarity=0.289  Sum_probs=134.2

Q ss_pred             cCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCC--CCccccCCCCCCEEEcccCccccccc-hhccCCCC
Q 042660           96 GSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG--FPGNLRNLQQLKVLDLRKNKLWGDIG-GIMSELKN  172 (261)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~  172 (261)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+.+.+| ..+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            5678899999999999988888899999999999999999862  35678899999999999999988444 45888899


Q ss_pred             CCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccE
Q 042660          173 VEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE  252 (261)
Q Consensus       173 L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  252 (261)
                      |++|++++|.+++..|..+.       ++|+.|++++|+++..++.+..+++|+.|++++|+++ .+|...+..+++|+.
T Consensus       430 L~~L~l~~n~l~~~~~~~l~-------~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~  501 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP-------PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY  501 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC-------TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCC
T ss_pred             CCEEECCCCCCCcchhhhhc-------CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCE
Confidence            99999999999876655442       3679999999999965556669999999999999999 788876777889999


Q ss_pred             EEccCccCC
Q 042660          253 LDLSGNGFT  261 (261)
Q Consensus       253 L~L~~N~ls  261 (261)
                      |++++|+++
T Consensus       502 L~l~~N~~~  510 (562)
T 3a79_B          502 IWLHDNPWD  510 (562)
T ss_dssp             EECCSCCBC
T ss_pred             EEecCCCcC
Confidence            999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=2.4e-21  Score=175.31  Aligned_cols=177  Identities=25%  Similarity=0.192  Sum_probs=136.4

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ...+|+|++|+|++..+.+|.++++|++|++++|+|+++.+.+|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            45689999999988777889999999999999999988888888999999999999999987666778889999999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccc-cCCccccccccCCCCCccEEEcccCccCccCc-cCCCCC----CCCEEE
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHG-GLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLP----NLKVLR  229 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~----~L~~L~  229 (261)
                      +|++++..+..|+++++|++|++++|.+++ ..|..+..+.     +|++|++++|++++..+ .+..+.    ....++
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~  207 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  207 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch-----hhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence            999988777788899999999999998865 3455555554     55899999999887666 454333    234677


Q ss_pred             cccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660          230 LGSNQLFGMIPEELLESVIPIQELDLSGNG  259 (261)
Q Consensus       230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (261)
                      ++.|.++ .++...+.. ..+..+++.+|.
T Consensus       208 ls~n~l~-~i~~~~~~~-~~~~~l~l~~n~  235 (635)
T 4g8a_A          208 LSLNPMN-FIQPGAFKE-IRLHKLTLRNNF  235 (635)
T ss_dssp             CTTCCCC-EECTTTTTT-CEEEEEEEESCC
T ss_pred             cccCccc-ccCcccccc-hhhhhhhhhccc
Confidence            8888776 444444332 245566666653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.85  E-value=3.7e-21  Score=172.44  Aligned_cols=179  Identities=26%  Similarity=0.312  Sum_probs=154.2

Q ss_pred             CeEEEEcCCCCccccC--cccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCEE
Q 042660           76 GSVNLSLSGNNFTGRI--VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLKVL  152 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L  152 (261)
                      ....|++++|.+++..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+..+++|++|
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            4457888888888653  67788899999999999998865554 8899999999999999987655 568899999999


Q ss_pred             EcccCccccccchhccCCCCCCEEecccCccc-ccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEc
Q 042660          153 DLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH-GGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRL  230 (261)
Q Consensus       153 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L  230 (261)
                      ++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+.     +|++|++++|++++..| .+..+++|+.|++
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc-----CCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence            99999999999999999999999999999997 56787776664     56999999999998877 8899999999999


Q ss_pred             ccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          231 GSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       231 ~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      ++|.++ .+++..+..+++|+.|++++|+++
T Consensus       502 ~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          502 ASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCcCC-CCCHHHhhcccCCcEEEecCCccc
Confidence            999999 456666677889999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.2e-20  Score=148.05  Aligned_cols=166  Identities=22%  Similarity=0.224  Sum_probs=138.1

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .++.+++.++. +|..+  .+++++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        11 ~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            68888888874 44433  3589999999999998888888999999999999999997667778999999999999999


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFG  237 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~  237 (261)
                      +.+..+..+..+++|++|++++|.+++..+..+..+.     +|+.|++++|++++.++ .+..+++|+.|++++|.+.+
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-----QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC-----cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            9988888889999999999999999866665555554     56999999999998777 68889999999999999986


Q ss_pred             cCcHHHHhCCCCccEEEccCccC
Q 042660          238 MIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       238 ~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      ..+        +|+.|+++.|.+
T Consensus       163 ~~~--------~l~~L~~~~n~~  177 (208)
T 2o6s_A          163 TCP--------GIRYLSEWINKH  177 (208)
T ss_dssp             CTT--------TTHHHHHHHHHC
T ss_pred             CCC--------CHHHHHHHHHhC
Confidence            543        445555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=9.1e-22  Score=163.79  Aligned_cols=178  Identities=23%  Similarity=0.227  Sum_probs=104.8

Q ss_pred             eEEEEcCCCCccccCcccc--cCCCCCCEEECcCCcCcCCCC----ccccCCCCCCEEEccCCcCcCCCCccccCCCCCC
Q 042660           77 SVNLSLSGNNFTGRIVPAL--GSISSLQYLDLSNNKFIGPIP----GRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLK  150 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  150 (261)
                      ..+|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+++..+..++.+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            4478888888887777776  677777777777777775444    2334566777777777777666666677777777


Q ss_pred             EEEcccCccccc--c--chh---------------------------ccCCCCCCEEecccCcccccCCccccccccCCC
Q 042660          151 VLDLRKNKLWGD--I--GGI---------------------------MSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN  199 (261)
Q Consensus       151 ~L~l~~n~l~~~--~--~~~---------------------------~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~  199 (261)
                      +|++++|++.+.  .  +..                           +..+++|++|++++|.+++..|..+..+...  
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~--  250 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS--  250 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC--
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc--
Confidence            777777765431  1  111                           2334555555555555554444444433211  


Q ss_pred             CCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       200 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      ++|++|++++|+++..+..+.  ++|+.|++++|++++ +|.  +..+++|+.|++++|+|+
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-APQ--PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CCC--TTSCCCCSCEECSSTTTS
T ss_pred             CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-Cch--hhhCCCccEEECcCCCCC
Confidence            355666666666663322332  466666666666663 222  234456666666666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=1.3e-20  Score=158.18  Aligned_cols=176  Identities=24%  Similarity=0.266  Sum_probs=115.6

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|.+++..|..+..+++|++|++++|.+.. +|..+.  ++|++|++++|.++...+..+..+++|++|+++
T Consensus        79 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  155 (332)
T 2ft3_A           79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG  155 (332)
T ss_dssp             TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred             CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence            45689999999998888999999999999999999884 444333  678888888888876656667788888888888


Q ss_pred             cCcccc--ccchhccCC--------------------CCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccC
Q 042660          156 KNKLWG--DIGGIMSEL--------------------KNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGIT  213 (261)
Q Consensus       156 ~n~l~~--~~~~~~~~l--------------------~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~  213 (261)
                      +|.+..  ..+..+..+                    ++|++|++++|.+++..+..+..+     ++|+.|++++|.++
T Consensus       156 ~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~L~~N~l~  230 (332)
T 2ft3_A          156 GNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRY-----SKLYRLGLGHNQIR  230 (332)
T ss_dssp             SCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTC-----TTCSCCBCCSSCCC
T ss_pred             CCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCC-----CCCCEEECCCCcCC
Confidence            887742  444444433                    234444444444443333333333     34566666666666


Q ss_pred             ccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          214 GELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       214 ~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +..+ .+..+++|+.|++++|.++ .+|..+ ..+++|+.|++++|+++
T Consensus       231 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CCCTTGGGGCTTCCEEECCSSCCC-BCCTTG-GGCTTCCEEECCSSCCC
T ss_pred             cCChhHhhCCCCCCEEECCCCcCe-ecChhh-hcCccCCEEECCCCCCC
Confidence            6555 5566666666666666666 555543 34556666666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=2.6e-20  Score=156.15  Aligned_cols=173  Identities=18%  Similarity=0.212  Sum_probs=118.3

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcC--CCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEccc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIG--PIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK  156 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  156 (261)
                      +|++++|.+++..+..+..+++|++|++++|.+..  ..+..+.++++|++|++++|.++. +|..+.  ++|++|++++
T Consensus       125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~  201 (330)
T 1xku_A          125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDG  201 (330)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTT
T ss_pred             EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCC
Confidence            45555555555445556666777777777776642  555666667777777777777664 444433  6777777777


Q ss_pred             CccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCc
Q 042660          157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       157 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~  236 (261)
                      |.+.+..+..+..+++|+.|++++|.+++..+..+..+.     +|++|++++|+++..+..+..+++|+.|++++|.++
T Consensus       202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-----HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-----TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC-----CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence            777777777788888888888888888766665565553     458888888888744447777888888888888887


Q ss_pred             ccCcHHHHhCC------CCccEEEccCccC
Q 042660          237 GMIPEELLESV------IPIQELDLSGNGF  260 (261)
Q Consensus       237 ~~~~~~~~~~~------~~L~~L~L~~N~l  260 (261)
                       .++...|...      ..++.+++++|++
T Consensus       277 -~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          277 -AIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             -CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             -ccChhhcCCcccccccccccceEeecCcc
Confidence             4555444322      4677788888775

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=3e-21  Score=160.62  Aligned_cols=152  Identities=24%  Similarity=0.279  Sum_probs=123.6

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCC---C-CccccCCCCCCEEEccCCcCcCCCCc----cccCCC
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGP---I-PGRITDLWGLNYLNLSMNGFKGGFPG----NLRNLQ  147 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~-~~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~l~  147 (261)
                      ....|++++|.+.+..+..+..+++|++|++++|++.+.   . +..+..+++|++|++++|.++. ++.    .+..++
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~  224 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGV  224 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTC
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCC
Confidence            556889999999888888888999999999999987642   1 2234678899999999999873 333    246789


Q ss_pred             CCCEEEcccCccccccchhccCC---CCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCC
Q 042660          148 QLKVLDLRKNKLWGDIGGIMSEL---KNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPN  224 (261)
Q Consensus       148 ~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~  224 (261)
                      +|++|++++|.+.+..|..+..+   ++|++|++++|.++ .+|..+.       ++|++|+|++|++++. |.+..+++
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-------~~L~~L~Ls~N~l~~~-~~~~~l~~  295 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-------AKLRVLDLSSNRLNRA-PQPDELPE  295 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-------SCCSCEECCSCCCCSC-CCTTSCCC
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-------CCCCEEECCCCcCCCC-chhhhCCC
Confidence            99999999999998888777776   69999999999998 5565542       4779999999999965 44677899


Q ss_pred             CCEEEcccCcCcc
Q 042660          225 LKVLRLGSNQLFG  237 (261)
Q Consensus       225 L~~L~L~~n~l~~  237 (261)
                      |+.|++++|.+++
T Consensus       296 L~~L~L~~N~l~~  308 (310)
T 4glp_A          296 VDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCEECSSTTTSC
T ss_pred             ccEEECcCCCCCC
Confidence            9999999999974

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=2.4e-20  Score=147.74  Aligned_cols=150  Identities=23%  Similarity=0.253  Sum_probs=131.0

Q ss_pred             CEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccC
Q 042660          102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN  181 (261)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  181 (261)
                      +.++.+++.++. +|..+.  +++++|++++|.+++..+..|..+++|+.|++++|.+.+..|..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            578889999884 555443  68999999999999877778999999999999999999999999999999999999999


Q ss_pred             cccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          182 RFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       182 ~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      .+++..+..+..+     ++|+.|+|++|++++..+ .+..+++|+.|+|++|.++ .++...+..+++|+.|++++|++
T Consensus        91 ~l~~l~~~~f~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           91 KITELPKSLFEGL-----FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCCCCTTTTTTC-----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCCccCHhHccCC-----CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCc
Confidence            9986555555555     456999999999998888 8999999999999999999 67777777788999999999986

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=5.5e-21  Score=168.52  Aligned_cols=180  Identities=24%  Similarity=0.277  Sum_probs=90.2

Q ss_pred             eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc---------------
Q 042660           77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG---------------  141 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~---------------  141 (261)
                      ...|++++|.+++..|..+..+++|++|++++|.+.+..|  +..+++|++|++++|.+++..+.               
T Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~  113 (487)
T 3oja_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR  113 (487)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCC
T ss_pred             ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCC
Confidence            3456666666655555555556666666666665554333  44555555554444444321100               


Q ss_pred             -cccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCcccc-ccccC-----------------CCCCc
Q 042660          142 -NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGAD-NVSSI-----------------ANTNL  202 (261)
Q Consensus       142 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~~l-----------------~~~~L  202 (261)
                       ....+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+..+                 ..++|
T Consensus       114 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L  193 (487)
T 3oja_A          114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL  193 (487)
T ss_dssp             EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTC
T ss_pred             CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCC
Confidence             001123444444444444444444444444444444444444443333332 12111                 12455


Q ss_pred             cEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          203 EVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       203 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +.|+|++|.+++.+|.+..+++|+.|++++|.++ .+|.. +..+++|+.|++++|++
T Consensus       194 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCB
T ss_pred             CEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchh-hccCCCCCEEEcCCCCC
Confidence            6666666666665555556666666666666666 34443 33445666677766665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=3.8e-21  Score=160.55  Aligned_cols=175  Identities=25%  Similarity=0.255  Sum_probs=105.0

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCc----------------cccCCCCCCEEEccCCcCcCCC
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPG----------------RITDLWGLNYLNLSMNGFKGGF  139 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~~~~l~~L~~L~l~~n~l~~~~  139 (261)
                      ....|++++|.+++..+  +..+++|++|++++|.+.+..+.                ....+++|++|++++|.+++..
T Consensus        59 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~  136 (317)
T 3o53_A           59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR  136 (317)
T ss_dssp             TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGG
T ss_pred             cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCcc
Confidence            34466666666654333  55666666666666655432110                0112334455555555555444


Q ss_pred             CccccCCCCCCEEEcccCccccccchhc-cCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCcc
Q 042660          140 PGNLRNLQQLKVLDLRKNKLWGDIGGIM-SELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPS  218 (261)
Q Consensus       140 p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~  218 (261)
                      +..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+.     .  ..++|++|++++|.+++.++.
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~--~l~~L~~L~Ls~N~l~~l~~~  209 (317)
T 3o53_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----V--VFAKLKTLDLSSNKLAFMGPE  209 (317)
T ss_dssp             GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-----C--CCTTCCEEECCSSCCCEECGG
T ss_pred             chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-----c--ccccCCEEECCCCcCCcchhh
Confidence            4455556666666666666665555544 3566666666666666533111     1  135678888888888876667


Q ss_pred             CCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          219 FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       219 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +..+++|+.|++++|.++ .+|.. +..+++|+.|++++|+++
T Consensus       210 ~~~l~~L~~L~L~~N~l~-~l~~~-~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          210 FQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCCB
T ss_pred             hcccCcccEEECcCCccc-chhhH-hhcCCCCCEEEccCCCcc
Confidence            777788888888888887 56654 355678888888888763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=6.2e-21  Score=177.71  Aligned_cols=181  Identities=19%  Similarity=0.250  Sum_probs=118.3

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCc-CcC-CCCccccCC-------CCCCEEEccCCcCcCCCCc--ccc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNK-FIG-PIPGRITDL-------WGLNYLNLSMNGFKGGFPG--NLR  144 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~l~~n~l~~~~p~--~~~  144 (261)
                      ....|++++|++.+.+|..+.++++|++|++++|+ +++ .+|..+..+       ++|++|++++|.++ .+|.  .++
T Consensus       492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~  570 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ  570 (876)
T ss_dssp             TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred             CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence            44577888888777777777777778888887776 666 555544333       36677777777666 4666  666


Q ss_pred             CCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCcccccccc-CC--------------------CCCcc
Q 042660          145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS-IA--------------------NTNLE  203 (261)
Q Consensus       145 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~-l~--------------------~~~L~  203 (261)
                      .+++|+.|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+..+.. +.                    .++|+
T Consensus       571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~  647 (876)
T 4ecn_A          571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG  647 (876)
T ss_dssp             TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEE
T ss_pred             cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCC
Confidence            6666666666666665 444 5566666666666666665 45544444433 21                    12367


Q ss_pred             EEEcccCccCccCccCC------CCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          204 VLDLGDNGITGELPSFG------MLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       204 ~L~Ls~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      .|++++|.+.+.+|.+.      ..++|+.|++++|.++ .+|..++..+++|+.|+|++|+++
T Consensus       648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence            77777777766555222      2346778888888887 677777777778888888888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.84  E-value=5.4e-21  Score=179.00  Aligned_cols=191  Identities=22%  Similarity=0.197  Sum_probs=154.4

Q ss_pred             CCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCC-CccccCCCCCCEEEccCCcCcCCCCcc
Q 042660           64 VSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPI-PGRITDLWGLNYLNLSMNGFKGGFPGN  142 (261)
Q Consensus        64 ~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~  142 (261)
                      +.|..|.+ -......|++++|.+++..+..+.++++|++|++++|...+.+ |..|.++++|++|++++|.+++..|..
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            36666766 4467779999999999888999999999999999999665554 788999999999999999999888999


Q ss_pred             ccCCCCCCEEEcccCccccccchh--ccCCCCCCEEecccCcccccCC-ccccccccCCCCCccEEEcccCccCccCc-c
Q 042660          143 LRNLQQLKVLDLRKNKLWGDIGGI--MSELKNVEFVDLSFNRFHGGLG-VGADNVSSIANTNLEVLDLGDNGITGELP-S  218 (261)
Q Consensus       143 ~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~  218 (261)
                      |.++++|++|++++|.+.+..+..  +.++++|++|++++|.+++..+ ..+..+.     +|++|++++|.+++..+ .
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~-----~L~~L~Ls~N~i~~~~~~~  167 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-----SLKSIDFSSNQIFLVCEHE  167 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS-----SCCEEEEESSCCCCCCSGG
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC-----CCCEEECCCCcCCeeCHHH
Confidence            999999999999999998866654  8899999999999999986544 3555554     56999999999987766 6


Q ss_pred             CCCC--CCCCEEEcccCcCcccCcHHHHhC-----CCCccEEEccCccC
Q 042660          219 FGML--PNLKVLRLGSNQLFGMIPEELLES-----VIPIQELDLSGNGF  260 (261)
Q Consensus       219 ~~~~--~~L~~L~L~~n~l~~~~~~~~~~~-----~~~L~~L~L~~N~l  260 (261)
                      +..+  ++|+.|++++|.+++..|..+...     ..+|+.|++++|.+
T Consensus       168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  216 (844)
T 3j0a_A          168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW  216 (844)
T ss_dssp             GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred             cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence            6655  788888888888887666543211     11488888888854

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=8.3e-21  Score=160.61  Aligned_cols=195  Identities=18%  Similarity=0.115  Sum_probs=146.8

Q ss_pred             CCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCC-ccccCCCCCCE-EE
Q 042660           62 CPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNY-LN  129 (261)
Q Consensus        62 c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~  129 (261)
                      |.|.+..|.|...          .+.++|+|++|+|+...+.+|.++++|++|++++|.+.+.+| ..|.+++++++ +.
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            6778999999632          245689999999997666789999999999999999866544 56788888776 56


Q ss_pred             ccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc-CcccccCCccccccccCCCCCccEEEcc
Q 042660          130 LSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF-NRFHGGLGVGADNVSSIANTNLEVLDLG  208 (261)
Q Consensus       130 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~~~~l~~~~L~~L~Ls  208 (261)
                      +..|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+....    ..++.|+++
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~----~~l~~L~L~  162 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS----FESVILWLN  162 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB----SSCEEEECC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc----hhhhhhccc
Confidence            677889887788899999999999999999877766666667777888765 455433333333332    246788888


Q ss_pred             cCccCccCccCCCCCCCCEEEccc-CcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          209 DNGITGELPSFGMLPNLKVLRLGS-NQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       209 ~n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +|+++..++......+|+.+++.+ |.++ .+|.+.|..+++|+.||+++|+|+
T Consensus       163 ~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          163 KNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             SSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred             cccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence            888886655444556788888865 5555 788887777778888888888774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=1e-20  Score=169.50  Aligned_cols=177  Identities=25%  Similarity=0.195  Sum_probs=154.1

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            45689999999998888899999999999999999998888899999999999999999998778899999999999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccc-cCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCC----CEEE
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHG-GLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNL----KVLR  229 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L----~~L~  229 (261)
                      +|.+.+..+..++.+++|++|++++|.+.+ .+|..+..+.     +|++|++++|.+++..+ .+..+.+|    ..++
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~  183 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  183 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred             ccccccCCCccccccccccEEecCCCccceecChhhhcccC-----CCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence            999988777679999999999999999986 4687777765     56999999999998777 67777777    8999


Q ss_pred             cccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660          230 LGSNQLFGMIPEELLESVIPIQELDLSGNG  259 (261)
Q Consensus       230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (261)
                      +++|.+++ +++..+... +|+.|++++|.
T Consensus       184 l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~  211 (570)
T 2z63_A          184 LSLNPMNF-IQPGAFKEI-RLHKLTLRNNF  211 (570)
T ss_dssp             CTTCCCCE-ECTTTTTTC-EEEEEEEESCC
T ss_pred             cCCCCcee-cCHHHhccC-cceeEeccccc
Confidence            99999985 444555443 79999998873

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=2.7e-20  Score=149.17  Aligned_cols=172  Identities=19%  Similarity=0.198  Sum_probs=147.3

Q ss_pred             CeEEEEcCCCC-ccccCcccccCCCCCCEEECcC-CcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCC---
Q 042660           76 GSVNLSLSGNN-FTGRIVPALGSISSLQYLDLSN-NKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLK---  150 (261)
Q Consensus        76 ~~~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~---  150 (261)
                      ....|++++|. ++...+..+..+++|++|++++ |.+.+..+..|.++++|++|++++|.+++ +|. +..+++|+   
T Consensus        56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~  133 (239)
T 2xwt_C           56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFF  133 (239)
T ss_dssp             TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEE
T ss_pred             CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccccc
Confidence            45689999997 8877777899999999999998 99998888889999999999999999997 676 88889998   


Q ss_pred             EEEcccC-ccccccchhccCCCCCC-EEecccCcccccCCccccccccCCCCCccEEEcccCc-cCccCc-cCCCC-CCC
Q 042660          151 VLDLRKN-KLWGDIGGIMSELKNVE-FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG-ITGELP-SFGML-PNL  225 (261)
Q Consensus       151 ~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~-~~L  225 (261)
                      +|++++| .+.+..+..|..+++|+ .|++++|.++ .+|......     .+|++|++++|+ +++.++ .+..+ ++|
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-----~~L~~L~L~~n~~l~~i~~~~~~~l~~~L  207 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-----TKLDAVYLNKNKYLTVIDKDAFGGVYSGP  207 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-----CEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-----CCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence            9999999 99888888899999999 9999999998 444332222     367999999995 987777 78888 999


Q ss_pred             CEEEcccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660          226 KVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG  259 (261)
Q Consensus       226 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (261)
                      +.|++++|.++ .+|..   .+.+|+.|+++++.
T Consensus       208 ~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          208 SLLDVSQTSVT-ALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             SEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred             cEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence            99999999998 67765   36789999998864

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=5.6e-20  Score=152.84  Aligned_cols=168  Identities=23%  Similarity=0.322  Sum_probs=134.6

Q ss_pred             CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      .....|++++|.+++..+  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus        63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence            356689999999986444  88899999999999998864  358889999999999999986 333 888999999999


Q ss_pred             ccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCc
Q 042660          155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ  234 (261)
Q Consensus       155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~  234 (261)
                      ++|.+.+..+  +..+++|++|++++|.+++..+  +..+     ++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus       137 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l-----~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          137 DLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANL-----SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC-----TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred             CCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCC-----CCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc
Confidence            9999976654  7888999999999999875322  3333     567999999999986554 6778899999999999


Q ss_pred             CcccCcHHHHhCCCCccEEEccCccCC
Q 042660          235 LFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +++ ++.  +..+++|+.|++++|+++
T Consensus       207 l~~-~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          207 ISD-VSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCB-CGG--GTTCTTCCEEEEEEEEEE
T ss_pred             cCc-ccc--ccCCCCCCEEEccCCeee
Confidence            984 443  566789999999998763

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=9.2e-20  Score=145.20  Aligned_cols=152  Identities=24%  Similarity=0.240  Sum_probs=131.2

Q ss_pred             CCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660          101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF  180 (261)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  180 (261)
                      .+.++.+++.+. .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            467888888887 4554443  7899999999999998899999999999999999999877778889999999999999


Q ss_pred             CcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      |.+++..+..+..+.     +|+.|++++|+++..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|++
T Consensus        98 N~l~~l~~~~~~~l~-----~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLV-----HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             SCCCCCCTTTTTTCT-----TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCB
T ss_pred             CcCCccChhHhCcch-----hhCeEeccCCcccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCc
Confidence            999876666566554     569999999999955448889999999999999998 67777778888999999999987


Q ss_pred             C
Q 042660          261 T  261 (261)
Q Consensus       261 s  261 (261)
                      +
T Consensus       172 ~  172 (229)
T 3e6j_A          172 D  172 (229)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=1.4e-19  Score=162.24  Aligned_cols=107  Identities=25%  Similarity=0.279  Sum_probs=74.8

Q ss_pred             CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      ....+|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|.++. +|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEEC
Confidence            355577788887777666777777778888888887777777777777777777777777763 5544  5677777777


Q ss_pred             ccCccccc-cchhccCCCCCCEEecccCccc
Q 042660          155 RKNKLWGD-IGGIMSELKNVEFVDLSFNRFH  184 (261)
Q Consensus       155 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~  184 (261)
                      ++|.+.+. .|..++++++|++|++++|.++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccc
Confidence            77777653 3466666666666666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=2.1e-19  Score=149.44  Aligned_cols=167  Identities=26%  Similarity=0.375  Sum_probs=141.7

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|+++++.++. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECC
Confidence            55689999999985 44 68889999999999999997655  8999999999999999986 3 368899999999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcC
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL  235 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l  235 (261)
                      +|.+.+..  .+..+++|++|++++|.+++..+  +..+     ++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus       116 ~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l-----~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          116 STQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGL-----TNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             TSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGC-----TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             CCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCC-----CCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence            99997753  38999999999999999975433  3333     567999999999997555 88899999999999999


Q ss_pred             cccCcHHHHhCCCCccEEEccCccCC
Q 042660          236 FGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       236 ~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      ++ ++.  +..+++|+.|++++|+++
T Consensus       186 ~~-~~~--l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          186 SD-ISP--LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             CC-CGG--GGGCTTCCEEECTTSCCC
T ss_pred             Cc-Chh--hcCCCCCCEEEccCCccC
Confidence            84 544  566789999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=3.3e-20  Score=167.91  Aligned_cols=171  Identities=25%  Similarity=0.187  Sum_probs=140.8

Q ss_pred             CCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccc
Q 042660           83 SGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGD  162 (261)
Q Consensus        83 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  162 (261)
                      ++.+++ .+|..+.  +.+++|++++|+|+++.+.+|.++++|++|++++|.+++..|.+|.++++|++|++++|++.+.
T Consensus        39 ~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           39 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence            344455 4555442  4799999999999988889999999999999999999987788999999999999999999888


Q ss_pred             cchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc-Cc-cCCCCCCCCEEEcccCcCcccCc
Q 042660          163 IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE-LP-SFGMLPNLKVLRLGSNQLFGMIP  240 (261)
Q Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~-~~-~~~~~~~L~~L~L~~n~l~~~~~  240 (261)
                      .+..|.++++|++|++++|.+++..+..++.+.     +|++|++++|.+++. .| .+..+++|++|++++|.+++..+
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~-----~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-----TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT-----TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc-----ccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            888999999999999999999876666666664     569999999999864 45 67889999999999999996555


Q ss_pred             HHHH--hCCC-CccEEEccCccCC
Q 042660          241 EELL--ESVI-PIQELDLSGNGFT  261 (261)
Q Consensus       241 ~~~~--~~~~-~L~~L~L~~N~ls  261 (261)
                      ..+.  .... ....++++.|+++
T Consensus       191 ~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          191 TDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             ccccchhhhhhhhhhhhcccCccc
Confidence            4431  2222 4457888888763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=1.4e-19  Score=149.31  Aligned_cols=166  Identities=23%  Similarity=0.304  Sum_probs=137.4

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence            445899999998854 3 48889999999999999997655  8899999999999999986 33 48899999999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcC
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL  235 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l  235 (261)
                      +|.+.+.  ..+..+++|++|++++|.+++.  ..+..+     ++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus       121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-----~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL-----TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGC-----TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccC-----CCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence            9999774  4678899999999999999753  333333     567999999999997666 78899999999999999


Q ss_pred             cccCcHHHHhCCCCccEEEccCccC
Q 042660          236 FGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       236 ~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      + .++.  +..+++|+.|++++|++
T Consensus       191 ~-~l~~--l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          191 S-DLRA--LAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             C-BCGG--GTTCTTCSEEEEEEEEE
T ss_pred             C-CChh--hccCCCCCEEECcCCcc
Confidence            8 4553  56778999999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=8.9e-20  Score=144.40  Aligned_cols=151  Identities=26%  Similarity=0.266  Sum_probs=129.6

Q ss_pred             CEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660          102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF  180 (261)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  180 (261)
                      +.+++++|.++. +|..+.  ..+++|++++|.+++..+ ..|..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            589999999985 565443  457899999999997644 4588999999999999999998888999999999999999


Q ss_pred             CcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660          181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG  259 (261)
Q Consensus       181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (261)
                      |.+++..+..+..+.     +|++|+|++|++++..| .+..+++|+.|+|++|.+++ +++..+..+++|+.|++++|+
T Consensus        91 N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           91 NRLENVQHKMFKGLE-----SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SCCCCCCGGGGTTCS-----SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCC
T ss_pred             CccCccCHhHhcCCc-----CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcC
Confidence            999877766666664     56999999999999877 89999999999999999995 544556778899999999998


Q ss_pred             CC
Q 042660          260 FT  261 (261)
Q Consensus       260 ls  261 (261)
                      ++
T Consensus       165 l~  166 (220)
T 2v70_A          165 FN  166 (220)
T ss_dssp             EE
T ss_pred             Cc
Confidence            63

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.82  E-value=8.7e-20  Score=162.92  Aligned_cols=180  Identities=25%  Similarity=0.270  Sum_probs=151.9

Q ss_pred             CCCCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc
Q 042660           62 CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG  141 (261)
Q Consensus        62 c~~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  141 (261)
                      +.|.|.|+ |+         .++++++ .+|..+.  +++++|++++|.+++..|..|.++++|++|++++|++++..|.
T Consensus         2 ~~C~~~~~-c~---------~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            2 LSCDASGV-CD---------GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             CEECTTSE-EE---------CTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             ccCCCCce-EE---------CCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            34588887 75         3556676 4565543  7899999999999998899999999999999999999988889


Q ss_pred             cccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccc-cCCccccccccCCCCCccEEEcccCccCc-cCc-c
Q 042660          142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG-GLGVGADNVSSIANTNLEVLDLGDNGITG-ELP-S  218 (261)
Q Consensus       142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~-~  218 (261)
                      .|..+++|++|++++|.+.+..+..++.+++|++|++++|.+++ ..|..+..+     ++|++|++++|.+.+ .++ .
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~  143 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL-----TNLQTLRIGNVETFSEIRRID  143 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC-----TTCCEEEEEESSSCCEECTTT
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc-----CCccEEECCCCccccccCHhh
Confidence            99999999999999999999888889999999999999999985 345555555     466999999998544 444 7


Q ss_pred             CCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          219 FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       219 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +..+++|++|++++|.+++..|..+ ..+.+|+.|++++|.+
T Consensus       144 ~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          144 FAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSES  184 (549)
T ss_dssp             TTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECSBS
T ss_pred             hhcccccCeeeccCCcccccChhhh-hccccCceEecccCcc
Confidence            8999999999999999997776554 5577999999999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=1.1e-19  Score=170.26  Aligned_cols=59  Identities=31%  Similarity=0.323  Sum_probs=34.1

Q ss_pred             CccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          201 NLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       201 ~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +|+.|++++|.+.+..+ .+..+++|+.|++++|.+++ +++..+..+++|+.|++++|.+
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l  326 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLL  326 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCC
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCC
Confidence            45566666666555544 55666666666666666663 3333344555666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=3e-20  Score=163.82  Aligned_cols=151  Identities=17%  Similarity=0.109  Sum_probs=103.6

Q ss_pred             CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCcccc-CCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660           98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR-NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV  176 (261)
Q Consensus        98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  176 (261)
                      +++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++..+  ...+++|+.|
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L  196 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTL  196 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEE
Confidence            34555666666666665566666666777777777777665565554 56677777777777655522  2346778888


Q ss_pred             ecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEcc
Q 042660          177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS  256 (261)
Q Consensus       177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~  256 (261)
                      ++++|.+++..| .+..+     ++|+.|++++|.+++.++.+..+++|+.|++++|.+....++.++..++.++.++++
T Consensus       197 ~Ls~N~l~~~~~-~~~~l-----~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          197 DLSSNKLAFMGP-EFQSA-----AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ECCSSCCCEECG-GGGGG-----TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             ECCCCCCCCCCH-hHcCC-----CCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            888888775433 35444     467999999999997665888899999999999999833444555556667666664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=2.3e-19  Score=159.27  Aligned_cols=133  Identities=25%  Similarity=0.335  Sum_probs=114.2

Q ss_pred             cCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcccc--ccchhccCCCCCCEEecccCcccccCCcc-cccccc
Q 042660          120 TDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWG--DIGGIMSELKNVEFVDLSFNRFHGGLGVG-ADNVSS  196 (261)
Q Consensus       120 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~  196 (261)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|++.+  .+|..+..+++|++|++++|.+++.+|.. +..+  
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l--  398 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT--  398 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC--
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC--
Confidence            578899999999999998889999999999999999999987  56788999999999999999998755543 3333  


Q ss_pred             CCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          197 IANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       197 l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                         ++|++|++++|++++..| .+.  ++|+.|++++|.++ .+|..++ .+++|+.|++++|+++
T Consensus       399 ---~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          399 ---KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLK  457 (520)
T ss_dssp             ---TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCC
T ss_pred             ---ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCC
Confidence               467999999999988776 443  78999999999998 8988876 6789999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=1.2e-19  Score=141.13  Aligned_cols=150  Identities=19%  Similarity=0.264  Sum_probs=69.6

Q ss_pred             CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEe
Q 042660           98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVD  177 (261)
Q Consensus        98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  177 (261)
                      +++|++|++++|.+. .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            344455555555544 222 34444555555555554331  22444455555555555555444444455555555555


Q ss_pred             cccCcccccCCccccccccCCCCCccEEEcccCc-cCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEcc
Q 042660          178 LSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG-ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS  256 (261)
Q Consensus       178 l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~  256 (261)
                      +++|.+++..|..+..+     ++|++|++++|. ++ ..+.+..+++|+.|++++|.+++ ++  .+..+++|+.|+++
T Consensus       119 Ls~n~i~~~~~~~l~~l-----~~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTL-----PKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAF  189 (197)
T ss_dssp             CCSSBCBGGGHHHHTTC-----SSCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEEC
T ss_pred             ecCCccCcHhHHHHhhC-----CCCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEee
Confidence            55555544333333332     233555555554 33 23344445555555555555552 32  22334455555555


Q ss_pred             CccC
Q 042660          257 GNGF  260 (261)
Q Consensus       257 ~N~l  260 (261)
                      +|+|
T Consensus       190 ~N~i  193 (197)
T 4ezg_A          190 SQTI  193 (197)
T ss_dssp             BC--
T ss_pred             Cccc
Confidence            5554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.81  E-value=4.2e-20  Score=143.22  Aligned_cols=131  Identities=18%  Similarity=0.172  Sum_probs=99.1

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCc-cccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPG-RITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN  157 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  157 (261)
                      .+++++++++ .+|..+..  ++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            3555566665 45554433  788888888888876664 4778888888888888888777888888888888888888


Q ss_pred             ccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc
Q 042660          158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP  217 (261)
Q Consensus       158 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~  217 (261)
                      ++.+..+..+..+++|++|++++|.+++..|..+..+.     +|++|++++|.+++..+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-----SLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-----TCCEEECTTCCBCCSGG
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-----CCCEEEeCCCCccCcCc
Confidence            88888777788888888888888888877777666654     45888888888876544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.81  E-value=4.7e-19  Score=149.38  Aligned_cols=165  Identities=25%  Similarity=0.345  Sum_probs=98.8

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      +|++++|.+.+..+  +..+++|+++++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.
T Consensus       181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence            44444444443221  4444555555555555543322  5556666666666666664322  6666677777777776


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFG  237 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~  237 (261)
                      +.+.  +.+..+++|++|++++|.+++.  ..+..+     ++|+.|++++|.+++..+ .+..+++|+.|++++|.+++
T Consensus       255 l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          255 ISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNL-----SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGC-----TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             cCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCC-----CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence            6553  3466667777777777766532  122222     456888888888777666 67777788888888888874


Q ss_pred             cCcHHHHhCCCCccEEEccCccCC
Q 042660          238 MIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       238 ~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      ..|   +..+++|+.|++++|+|+
T Consensus       326 ~~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          326 IRP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CGG---GGGCTTCSEESSSCC---
T ss_pred             ccC---hhhhhccceeehhhhccc
Confidence            433   445677888888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=1.1e-19  Score=154.28  Aligned_cols=181  Identities=24%  Similarity=0.160  Sum_probs=149.4

Q ss_pred             CCCCCCCCCCCCcceEEcCCC----------CCeEEEEcCCCCccccCccccc-CCCCCCEEECcCCcCcCCCCccccCC
Q 042660           54 TSLPDTKSCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALG-SISSLQYLDLSNNKFIGPIPGRITDL  122 (261)
Q Consensus        54 ~~~~~~~~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l  122 (261)
                      ...|..  |.|.+..+.|...          .....|++++|++++..+..+. .+++|++|++++|.|.++.+..|..+
T Consensus        10 ~~Cp~~--C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l   87 (361)
T 2xot_A           10 VSCPAN--CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV   87 (361)
T ss_dssp             TTCCTT--CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCCCCC--CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence            334444  5668888999642          1344899999999988888887 99999999999999998888899999


Q ss_pred             CCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCc
Q 042660          123 WGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNL  202 (261)
Q Consensus       123 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L  202 (261)
                      ++|++|++++|.++...+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..+.....  .++|
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~--l~~L  165 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK--LPKL  165 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------CTTC
T ss_pred             CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc--CCcC
Confidence            99999999999999877788999999999999999999998999999999999999999998543333322122  2577


Q ss_pred             cEEEcccCccCccCc-cCCCCCC--CCEEEcccCcCccc
Q 042660          203 EVLDLGDNGITGELP-SFGMLPN--LKVLRLGSNQLFGM  238 (261)
Q Consensus       203 ~~L~Ls~n~l~~~~~-~~~~~~~--L~~L~L~~n~l~~~  238 (261)
                      +.|+|++|++++.++ .+..++.  ++.|++++|.+...
T Consensus       166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            999999999997666 6777776  48899999998743

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=3.3e-20  Score=154.82  Aligned_cols=168  Identities=20%  Similarity=0.194  Sum_probs=140.1

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ...+|++++|.+++..|..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +    ..++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEECC
Confidence            45689999999998888899999999999999999987655  88999999999999999853 2    33899999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cC-CCCCCCCEEEcccC
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SF-GMLPNLKVLRLGSN  233 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~-~~~~~L~~L~L~~n  233 (261)
                      +|.+.+..+..   +++|++|++++|.+++..+..+..+     ++|++|++++|.+++..+ .+ ..+++|+.|++++|
T Consensus       108 ~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCR-----SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             SSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGG-----SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CCccCCcCccc---cCCCCEEECCCCCCCCccchhhhcc-----CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            99998776543   6789999999999987666666655     466999999999998766 44 46899999999999


Q ss_pred             cCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          234 QLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      .+++ ++...  .+++|+.|++++|+++
T Consensus       180 ~l~~-~~~~~--~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          180 FIYD-VKGQV--VFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             CCCE-EECCC--CCTTCCEEECCSSCCC
T ss_pred             cCcc-ccccc--ccccCCEEECCCCcCC
Confidence            9984 44333  3679999999999875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.2e-18  Score=153.86  Aligned_cols=169  Identities=21%  Similarity=0.263  Sum_probs=98.8

Q ss_pred             CcceE-EcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccc
Q 042660           65 SWTGV-SCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNL  143 (261)
Q Consensus        65 ~~~gv-~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~  143 (261)
                      .|.++ .|.. .+...|++++|++++ +|..+.  ++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +
T Consensus        49 ~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l  118 (571)
T 3cvr_A           49 AVSLLKECLI-NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L  118 (571)
T ss_dssp             HHHHHHHHHH-TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C
T ss_pred             hhhhcccccc-CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h
Confidence            57776 4542 345566777776665 444332  45666666666655 333   234555555555555554 343 3


Q ss_pred             c------------------CCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEE
Q 042660          144 R------------------NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVL  205 (261)
Q Consensus       144 ~------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L  205 (261)
                      .                  .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.       ++|+.|
T Consensus       119 ~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------~~L~~L  185 (571)
T 3cvr_A          119 PASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------ESLEAL  185 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-------TTCCEE
T ss_pred             hcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-------CCCCEE
Confidence            3                  23444455555554443 222   34455555555555553 333 22       467888


Q ss_pred             EcccCccCccCccCCCCCCC-------CEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          206 DLGDNGITGELPSFGMLPNL-------KVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       206 ~Ls~n~l~~~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +|++|+++..++ +..  +|       +.|+|++|.|+ .+|..++. +++|+.|++++|+++
T Consensus       186 ~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          186 DVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLS  243 (571)
T ss_dssp             ECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCC
T ss_pred             ECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCC
Confidence            888888874444 433  56       88899999888 78887766 788999999999875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=3.1e-20  Score=157.82  Aligned_cols=183  Identities=23%  Similarity=0.229  Sum_probs=78.9

Q ss_pred             eEEEEcCCCCccccCcccccCC-----CCCCEEECcCCcCcCCCCccc----cCC-CCCCEEEccCCcCcCCCCccc---
Q 042660           77 SVNLSLSGNNFTGRIVPALGSI-----SSLQYLDLSNNKFIGPIPGRI----TDL-WGLNYLNLSMNGFKGGFPGNL---  143 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~p~~~---  143 (261)
                      ..+|++++|.+++..+..+..+     ++|++|++++|.+.+..+..+    ..+ ++|++|++++|.+++..+..+   
T Consensus        53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  132 (362)
T 3goz_A           53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA  132 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence            3345555555554444333332     455555555555544333322    222 455555555555544333222   


Q ss_pred             -cC-CCCCCEEEcccCcccccc----chhccCCC-CCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc-
Q 042660          144 -RN-LQQLKVLDLRKNKLWGDI----GGIMSELK-NVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE-  215 (261)
Q Consensus       144 -~~-l~~L~~L~l~~n~l~~~~----~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~-  215 (261)
                       .. .++|++|++++|.+....    +..+...+ +|++|++++|.+++..+..+...-....++|++|+|++|.+++. 
T Consensus       133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~  212 (362)
T 3goz_A          133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS  212 (362)
T ss_dssp             HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence             12 134555555555554322    22223333 55555555555544333322221110012445555555555541 


Q ss_pred             ---Cc-cCCC-CCCCCEEEcccCcCcccCcHH---HHhCCCCccEEEccCcc
Q 042660          216 ---LP-SFGM-LPNLKVLRLGSNQLFGMIPEE---LLESVIPIQELDLSGNG  259 (261)
Q Consensus       216 ---~~-~~~~-~~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~L~~N~  259 (261)
                         ++ .+.. .++|+.|++++|.+++..+..   ++..+++|+.|++++|.
T Consensus       213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence               11 2222 235555566555555333322   12333455556555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.79  E-value=2.1e-18  Score=151.22  Aligned_cols=163  Identities=31%  Similarity=0.428  Sum_probs=95.6

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .|++++|.+++.  +.+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.
T Consensus       225 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ  298 (466)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred             EEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc
Confidence            444444444432  234455555555555555554333  4555566666666666554322  5556666666666666


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCccc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM  238 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~  238 (261)
                      +.+..+  +..+++|+.|++++|.+++..|  +..+     ++|+.|++++|.+++. +.+..+++|+.|++++|.+++.
T Consensus       299 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l-----~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          299 LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL-----TKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC-----TTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBC
T ss_pred             ccCchh--hcCCCCCCEEECcCCcCCCchh--hccC-----ccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCcc
Confidence            655433  5556666666666666654433  2222     4557777777777654 4566677777777777777755


Q ss_pred             CcHHHHhCCCCccEEEccCccC
Q 042660          239 IPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       239 ~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      .|   +..+++|+.|++++|++
T Consensus       369 ~~---~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          369 TP---LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             GG---GTTCTTCCEEECCCEEE
T ss_pred             ch---hhcCCCCCEEeccCCcc
Confidence            54   45566777788777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=3.9e-18  Score=143.73  Aligned_cols=152  Identities=24%  Similarity=0.351  Sum_probs=101.1

Q ss_pred             ccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCC
Q 042660           95 LGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE  174 (261)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  174 (261)
                      +..+++|++|++++|.+.+..+  +..+++|+++++++|.+++..+  +..+++|++|++++|.+.+..+  +..+++|+
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~  246 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT  246 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCC
Confidence            3444445555555554443222  4445555555555555543222  5666777777777777765544  67777888


Q ss_pred             EEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEE
Q 042660          175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD  254 (261)
Q Consensus       175 ~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  254 (261)
                      +|++++|.+++.  ..+..+     ++|+.|++++|.+++. +.+..+++|+.|++++|.+++ .+...+..+++|+.|+
T Consensus       247 ~L~l~~n~l~~~--~~~~~l-----~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~  317 (347)
T 4fmz_A          247 WLEIGTNQISDI--NAVKDL-----TKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLF  317 (347)
T ss_dssp             EEECCSSCCCCC--GGGTTC-----TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCG-GGHHHHHTCTTCSEEE
T ss_pred             EEECCCCccCCC--hhHhcC-----CCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCC-cChhHhhccccCCEEE
Confidence            888888877642  122222     5679999999998864 667788899999999999984 4455567788999999


Q ss_pred             ccCccCC
Q 042660          255 LSGNGFT  261 (261)
Q Consensus       255 L~~N~ls  261 (261)
                      +++|+++
T Consensus       318 L~~n~l~  324 (347)
T 4fmz_A          318 LSQNHIT  324 (347)
T ss_dssp             CCSSSCC
T ss_pred             ccCCccc
Confidence            9999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=2.1e-18  Score=134.09  Aligned_cols=150  Identities=20%  Similarity=0.238  Sum_probs=126.2

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|.++ .+| .+..+++|++|++++|.+..  +..+..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            4558999999999 455 68899999999999997763  3478899999999999999998789999999999999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCc-ccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCc
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNR-FHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ  234 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~  234 (261)
                      +|.+.+..+..+..+++|++|++++|. ++ .+| .+..+     ++|+.|++++|.+++. +.+..+++|+.|++++|+
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l-----~~L~~L~l~~n~i~~~-~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTL-----PELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGC-----SSCCEEECTTBCCCCC-TTGGGCSSCCEEEECBC-
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCC-----CCCCEEECCCCCCcCh-HHhccCCCCCEEEeeCcc
Confidence            999999889999999999999999998 54 343 34444     5679999999999864 477788999999999999


Q ss_pred             Ccc
Q 042660          235 LFG  237 (261)
Q Consensus       235 l~~  237 (261)
                      +.+
T Consensus       193 i~~  195 (197)
T 4ezg_A          193 IGG  195 (197)
T ss_dssp             ---
T ss_pred             cCC
Confidence            863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.7e-18  Score=154.61  Aligned_cols=133  Identities=23%  Similarity=0.310  Sum_probs=92.5

Q ss_pred             CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660          100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS  179 (261)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  179 (261)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            89999999999997 66554  378999999999999 477   457899999999999987 555 554  88999999


Q ss_pred             cCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660          180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG  259 (261)
Q Consensus       180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (261)
                      +|.+++ +|.   .     .++|+.|++++|.+++.++   .+++|+.|++++|.+++ +|. + .  .+|+.|++++|.
T Consensus       129 ~N~l~~-lp~---~-----l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l-~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          129 NNQLTM-LPE---L-----PALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-L-P--ESLEALDVSTNL  191 (571)
T ss_dssp             SSCCSC-CCC---C-----CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-C-C--TTCCEEECCSSC
T ss_pred             CCcCCC-CCC---c-----CccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-h-h--CCCCEEECcCCC
Confidence            998876 444   1     1345666666666664322   34455666666665553 444 2 1  455555555555


Q ss_pred             C
Q 042660          260 F  260 (261)
Q Consensus       260 l  260 (261)
                      |
T Consensus       192 L  192 (571)
T 3cvr_A          192 L  192 (571)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=7.8e-19  Score=142.70  Aligned_cols=145  Identities=26%  Similarity=0.319  Sum_probs=94.5

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|+++. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ +|... . ++|+.|+++
T Consensus        42 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~  114 (263)
T 1xeu_A           42 GVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD  114 (263)
T ss_dssp             TCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred             cCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence            34467777777764 33 56667777777777777775544  6677777777777777765 33322 2 677777777


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcC
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL  235 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l  235 (261)
                      +|.+++.  +.+..+++|+.|++++|.+++. + .+..+     ++|+.|++++|.+++. +.+..+++|+.|++++|.+
T Consensus       115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l-----~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFL-----SKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGC-----TTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred             CCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccC-----CCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence            7777653  2466777777777777777643 1 23333     4557777777777755 5566677777777777777


Q ss_pred             cc
Q 042660          236 FG  237 (261)
Q Consensus       236 ~~  237 (261)
                      ++
T Consensus       185 ~~  186 (263)
T 1xeu_A          185 VN  186 (263)
T ss_dssp             EC
T ss_pred             cC
Confidence            63

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=3.4e-18  Score=154.05  Aligned_cols=165  Identities=24%  Similarity=0.314  Sum_probs=114.7

Q ss_pred             eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEccc
Q 042660           77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK  156 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  156 (261)
                      ...|++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|++|+|++|.+++ +| .+..+++|+.|++++
T Consensus        45 L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           45 IDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             CCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTT
T ss_pred             CCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecC
Confidence            34567777777643 2 46777788888888888776554  6777788888888887775 33 577777888888888


Q ss_pred             CccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCc
Q 042660          157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       157 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~  236 (261)
                      |.+.+.  ..+..+++|+.|++++|.+++.  ..+..+     ++|+.|+|++|.+.+.+| +..+++|+.|+|++|.|+
T Consensus       119 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-----~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          119 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL-----TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSC-----TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCC--ccccCCCccCEEECCCCccCCc--hhhccc-----CCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence            877653  3467777888888888877643  223333     456888888888776656 667777888888888777


Q ss_pred             ccCcHHHHhCCCCccEEEccCccC
Q 042660          237 GMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       237 ~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      + ++  .+..+++|+.|+|++|++
T Consensus       189 ~-l~--~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          189 D-LR--ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             B-CG--GGTTCTTCSEEECCSEEE
T ss_pred             C-Ch--HHccCCCCCEEEccCCcC
Confidence            4 43  245567788888887765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.77  E-value=1.1e-17  Score=146.77  Aligned_cols=149  Identities=25%  Similarity=0.292  Sum_probs=85.7

Q ss_pred             cCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCE
Q 042660           96 GSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEF  175 (261)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  175 (261)
                      ..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+..+  +..+++|+.
T Consensus       218 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  291 (466)
T 1o6v_A          218 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN  291 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence            3344444444444444432  234455555555555555554322  5555666666666666554433  555666666


Q ss_pred             EecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEc
Q 042660          176 VDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL  255 (261)
Q Consensus       176 L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L  255 (261)
                      |++++|.+.+..+  +..+     ++|+.|++++|.+++..| +..+++|+.|++++|.+++ ++  .+..+++|+.|++
T Consensus       292 L~L~~n~l~~~~~--~~~l-----~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l  360 (466)
T 1o6v_A          292 LELNENQLEDISP--ISNL-----KNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD-VS--SLANLTNINWLSA  360 (466)
T ss_dssp             EECCSSCCSCCGG--GGGC-----TTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEEC
T ss_pred             EEcCCCcccCchh--hcCC-----CCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCC-ch--hhccCCCCCEEeC
Confidence            6666666654322  2222     456777777777776555 5567777777777777774 32  2455677888888


Q ss_pred             cCccCC
Q 042660          256 SGNGFT  261 (261)
Q Consensus       256 ~~N~ls  261 (261)
                      ++|+++
T Consensus       361 ~~n~l~  366 (466)
T 1o6v_A          361 GHNQIS  366 (466)
T ss_dssp             CSSCCC
T ss_pred             CCCccC
Confidence            887764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=3.2e-20  Score=158.96  Aligned_cols=182  Identities=21%  Similarity=0.249  Sum_probs=137.3

Q ss_pred             CCeEEEEcCCCCccc----cCcccccCCCCCCEEECcCCcCcCCCCccc----cCC---------CCCCEEEccCCcCc-
Q 042660           75 SGSVNLSLSGNNFTG----RIVPALGSISSLQYLDLSNNKFIGPIPGRI----TDL---------WGLNYLNLSMNGFK-  136 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~l~~n~l~-  136 (261)
                      .....|++++|.+++    .++..+..+++|++|++++|.+....+..+    ..+         ++|++|++++|+++ 
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            355688888888887    466777888888888888888864433333    333         78899999998887 


Q ss_pred             CCCC---ccccCCCCCCEEEcccCcccc-----ccchhccCCCCCCEEecccCccc----ccCCccccccccCCCCCccE
Q 042660          137 GGFP---GNLRNLQQLKVLDLRKNKLWG-----DIGGIMSELKNVEFVDLSFNRFH----GGLGVGADNVSSIANTNLEV  204 (261)
Q Consensus       137 ~~~p---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~~~~l~~~~L~~  204 (261)
                      ...+   ..+..+++|++|++++|.+..     ..+..+..+++|+.|++++|.++    +.+|..+..+     ++|+.
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~-----~~L~~  248 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-----PNLRE  248 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC-----TTCCE
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC-----CCcCE
Confidence            3344   456678889999999998863     34447788899999999999986    4455545444     45699


Q ss_pred             EEcccCccCcc----Cc-cC--CCCCCCCEEEcccCcCcc----cCcHHHHhCCCCccEEEccCccCC
Q 042660          205 LDLGDNGITGE----LP-SF--GMLPNLKVLRLGSNQLFG----MIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       205 L~Ls~n~l~~~----~~-~~--~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      |+|++|.+++.    ++ .+  +.+++|+.|+|++|.+++    .+|..++..+++|+.|++++|+++
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            99999999864    33 44  448899999999999986    477777666789999999999875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=1.3e-19  Score=153.97  Aligned_cols=186  Identities=20%  Similarity=0.149  Sum_probs=142.2

Q ss_pred             CeEEEEcCCCCccccCc----ccccCCC-CCCEEECcCCcCcCCCCccccCC-----CCCCEEEccCCcCcCCCCccc--
Q 042660           76 GSVNLSLSGNNFTGRIV----PALGSIS-SLQYLDLSNNKFIGPIPGRITDL-----WGLNYLNLSMNGFKGGFPGNL--  143 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~--  143 (261)
                      ...+|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..+     ++|++|++++|.+++..+..+  
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            46799999999998766    7788888 89999999999998777777664     899999999999987666544  


Q ss_pred             --cCC-CCCCEEEcccCccccccchhc----cC-CCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc
Q 042660          144 --RNL-QQLKVLDLRKNKLWGDIGGIM----SE-LKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE  215 (261)
Q Consensus       144 --~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~  215 (261)
                        ... ++|++|++++|.+++..+..+    .. .++|++|++++|.+++..+..+...-.-..++|++|+|++|++++.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence              344 899999999999987766554    34 3699999999999986444333222111123789999999999876


Q ss_pred             Cc-c----CCCC-CCCCEEEcccCcCccc----CcHHHHhCCCCccEEEccCccCC
Q 042660          216 LP-S----FGML-PNLKVLRLGSNQLFGM----IPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       216 ~~-~----~~~~-~~L~~L~L~~n~l~~~----~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      .+ .    +... ++|+.|+|++|.+++.    ++..+....++|+.|++++|+++
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            65 3    3344 5899999999999854    34444443458999999999874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=1.5e-17  Score=128.70  Aligned_cols=134  Identities=23%  Similarity=0.196  Sum_probs=117.0

Q ss_pred             CEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc-cccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660          102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG-NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF  180 (261)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  180 (261)
                      +.+++++|.+. .+|..+..  ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            78999999997 56655533  899999999999976554 488999999999999999999999999999999999999


Q ss_pred             CcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHH
Q 042660          181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEEL  243 (261)
Q Consensus       181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~  243 (261)
                      |.+++..+..+..+.     +|++|+|++|++++..| .+..+++|+.|++++|.+++..+..+
T Consensus        88 N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~  146 (192)
T 1w8a_A           88 NKIKEISNKMFLGLH-----QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             CCCCEECSSSSTTCT-----TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             CcCCccCHHHhcCCC-----CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH
Confidence            999988777776664     56999999999999888 88999999999999999997766544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=2.1e-19  Score=165.40  Aligned_cols=202  Identities=22%  Similarity=0.142  Sum_probs=94.0

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCC--
Q 042660           25 SESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQ--  102 (261)
Q Consensus        25 ~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~--  102 (261)
                      .+.+..++.+++.+....... ....|....   ..  ...|.++.+.. ..++.+++.++.+... +..+.....|+  
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~---~~--~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~  201 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTA-KKQQPTGDS---TP--SGTATNSAVST-PLTPKIELFANGKDEA-NQALLQHKKLSQY  201 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTT-C---------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCc-ccCCCcCCC---Cc--cccCCCceecC-CccceEEeeCCCCCcc-hhhHhhcCccCcc
Confidence            457788888888776322222 133454322   11  12677766654 3455677777776642 32222222222  


Q ss_pred             ---EEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660          103 ---YLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS  179 (261)
Q Consensus       103 ---~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  179 (261)
                         .+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|+
T Consensus       202 ~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls  278 (727)
T 4b8c_D          202 SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS  278 (727)
T ss_dssp             ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred             cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence               2223333333 44566677777777777777777 46666667777777777777776 666777777777777777


Q ss_pred             cCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHH
Q 042660          180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEEL  243 (261)
Q Consensus       180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  243 (261)
                      +|.++ .+|..+..+.     +|++|+|++|.++..+..++.+++|+.|+|++|.|++.+|..+
T Consensus       279 ~N~l~-~lp~~~~~l~-----~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          279 HNRLT-SLPAELGSCF-----QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TSCCS-SCCSSGGGGT-----TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCcCC-ccChhhcCCC-----CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            77776 5666666654     4477777777776443367777777777777777776555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.75  E-value=2.1e-17  Score=126.17  Aligned_cols=136  Identities=26%  Similarity=0.297  Sum_probs=93.6

Q ss_pred             CCCCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc
Q 042660           62 CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG  141 (261)
Q Consensus        62 c~~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  141 (261)
                      |.|.|.++.|..           ++++. +|..+  .+++++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus         5 C~C~~~~l~~~~-----------~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (177)
T 2o6r_A            5 CSCSGTEIRCNS-----------KGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG   70 (177)
T ss_dssp             CEEETTEEECCS-----------SCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             CEeCCCEEEecC-----------CCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh
Confidence            666888877753           44442 33322  25788888888888877777778888888888888888866666


Q ss_pred             cccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660          142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL  216 (261)
Q Consensus       142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  216 (261)
                      .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+     ++|++|++++|.+.+..
T Consensus        71 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           71 VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL-----TSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCBCCCH
T ss_pred             HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCC-----cccCEEEecCCCeeccC
Confidence            67788888888888888877666667777777777777777764333333333     24466666666666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.75  E-value=6.4e-17  Score=141.45  Aligned_cols=162  Identities=25%  Similarity=0.252  Sum_probs=83.9

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|++++. +  +..+++|++|++++|.+++. +  +..+++|++|++++|.+++ +|  ++.+++|++|+++
T Consensus        65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~  135 (457)
T 3bz5_A           65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA  135 (457)
T ss_dssp             TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred             CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence            344566666666653 2  55556666666666666543 2  5555566666666665554 22  4555555555555


Q ss_pred             cCccccccc-------------------hhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660          156 KNKLWGDIG-------------------GIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL  216 (261)
Q Consensus       156 ~n~l~~~~~-------------------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  216 (261)
                      +|.+++...                   -.+..+++|++|++++|.+++ +|  +..+     ++|+.|++++|.+++. 
T Consensus       136 ~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l-----~~L~~L~l~~N~l~~~-  206 (457)
T 3bz5_A          136 RNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQN-----KLLNRLNCDTNNITKL-  206 (457)
T ss_dssp             TSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTC-----TTCCEEECCSSCCSCC-
T ss_pred             CCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccC-----CCCCEEECcCCcCCee-
Confidence            555544210                   013344555555555555543 11  2222     3445555555555543 


Q ss_pred             ccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          217 PSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       217 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                       .+..+++|+.|++++|.+++ +|   +..+++|+.|++++|++
T Consensus       207 -~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          207 -DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             -CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCC
T ss_pred             -ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcC
Confidence             24455566666666666653 44   33445666666666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.75  E-value=8e-17  Score=140.83  Aligned_cols=167  Identities=20%  Similarity=0.204  Sum_probs=127.4

Q ss_pred             CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      .....|++++|.+++. | .+..+++|++|++++|.+++. |  +..+++|++|++++|.+++. +  ++.+++|++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence            3556899999999974 4 689999999999999999975 3  88999999999999999974 4  889999999999


Q ss_pred             ccCccccccchhccCCCCCCEEecccCcccccCCccccccccC-----------------CCCCccEEEcccCccCccCc
Q 042660          155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI-----------------ANTNLEVLDLGDNGITGELP  217 (261)
Q Consensus       155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l-----------------~~~~L~~L~Ls~n~l~~~~~  217 (261)
                      ++|.+.+. +  ++.+++|++|++++|.+++. +  +..+..+                 ..++|++|++++|++++. |
T Consensus       114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-~  186 (457)
T 3bz5_A          114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-D  186 (457)
T ss_dssp             CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-C
T ss_pred             CCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-c
Confidence            99999874 3  88999999999999999863 2  2222211                 124566666666666653 3


Q ss_pred             cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          218 SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       218 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                       +..+++|+.|++++|.+++ ++   +..+++|+.|++++|+++
T Consensus       187 -l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          187 -VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCS
T ss_pred             -cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCccc
Confidence             5566677777777777764 32   344567777777777764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2e-17  Score=136.38  Aligned_cols=162  Identities=27%  Similarity=0.295  Sum_probs=131.6

Q ss_pred             EcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccc
Q 042660           81 SLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLW  160 (261)
Q Consensus        81 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  160 (261)
                      .+..+.+.+..  .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.
T Consensus        30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  103 (291)
T 1h6t_A           30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK  103 (291)
T ss_dssp             HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence            34445554332  244678899999999999865 3 47889999999999999997444  899999999999999997


Q ss_pred             cccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCc
Q 042660          161 GDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIP  240 (261)
Q Consensus       161 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~  240 (261)
                      +.  ..+..+++|++|++++|.+++.  ..+..+     ++|+.|++++|++++. +.+..+++|+.|++++|.+++ ++
T Consensus       104 ~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l-----~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~  172 (291)
T 1h6t_A          104 DL--SSLKDLKKLKSLSLEHNGISDI--NGLVHL-----PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IV  172 (291)
T ss_dssp             CG--GGGTTCTTCCEEECTTSCCCCC--GGGGGC-----TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CG
T ss_pred             CC--hhhccCCCCCEEECCCCcCCCC--hhhcCC-----CCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-ch
Confidence            63  3489999999999999999753  233333     5679999999999965 778889999999999999985 44


Q ss_pred             HHHHhCCCCccEEEccCccCC
Q 042660          241 EELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       241 ~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      .  +..+++|+.|++++|.++
T Consensus       173 ~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          173 P--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             G--GTTCTTCCEEECCSSCCC
T ss_pred             h--hcCCCccCEEECCCCcCC
Confidence            4  667889999999999875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=8.6e-18  Score=127.21  Aligned_cols=135  Identities=27%  Similarity=0.329  Sum_probs=92.5

Q ss_pred             CCCCCEEECcCCcCc-CCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660           98 ISSLQYLDLSNNKFI-GPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV  176 (261)
Q Consensus        98 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  176 (261)
                      .+++++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356777788777776 56666677777777788877777754  667777777788887777777667766667777777


Q ss_pred             ecccCcccccCC-ccccccccCCCCCccEEEcccCccCccCc----cCCCCCCCCEEEcccCcCcccCc
Q 042660          177 DLSFNRFHGGLG-VGADNVSSIANTNLEVLDLGDNGITGELP----SFGMLPNLKVLRLGSNQLFGMIP  240 (261)
Q Consensus       177 ~l~~n~l~~~~p-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~~~L~~L~L~~n~l~~~~~  240 (261)
                      ++++|.+++..+ ..+..+     ++|+.|++++|.+++.++    .+..+++|+.|++++|.+. .+|
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l-----~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~  163 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKL-----ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAP  163 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSC-----SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred             eccCCccCcchhHHHHhcC-----CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcc
Confidence            777777764211 233333     355777777777776555    4666777777777777765 444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=7.3e-19  Score=147.49  Aligned_cols=174  Identities=22%  Similarity=0.221  Sum_probs=81.0

Q ss_pred             EEEcCCCCcccc-CcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCC-cCcC-CCCccccCCCCCCEEEcc
Q 042660           79 NLSLSGNNFTGR-IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMN-GFKG-GFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        79 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~p~~~~~l~~L~~L~l~  155 (261)
                      +|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++ .++..+..+++|++|+++
T Consensus        97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~  176 (336)
T 2ast_B           97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS  176 (336)
T ss_dssp             EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred             EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence            444444444433 3444444445555555555444444444444455555555554 3332 133334444455555555


Q ss_pred             cC-ccccc-cchhccCCC-CCCEEecccC--ccc-ccCCccccccccCCCCCccEEEcccCc-cCccCc-cCCCCCCCCE
Q 042660          156 KN-KLWGD-IGGIMSELK-NVEFVDLSFN--RFH-GGLGVGADNVSSIANTNLEVLDLGDNG-ITGELP-SFGMLPNLKV  227 (261)
Q Consensus       156 ~n-~l~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~p~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~~~L~~  227 (261)
                      +| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+     ++|+.|++++|. +++..+ .+..+++|+.
T Consensus       177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~-----~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~  251 (336)
T 2ast_B          177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC-----PNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  251 (336)
T ss_dssp             CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC-----TTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC-----CCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence            55 44332 334444444 5555555555  222 1222222222     345666666666 443333 5555666666


Q ss_pred             EEcccCc-CcccCcHHHHhCCCCccEEEccCc
Q 042660          228 LRLGSNQ-LFGMIPEELLESVIPIQELDLSGN  258 (261)
Q Consensus       228 L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~N  258 (261)
                      |++++|. ++.... ..+..+++|+.|++++|
T Consensus       252 L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          252 LSLSRCYDIIPETL-LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred             eeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence            6666663 221111 12334556666666665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=6.2e-19  Score=147.93  Aligned_cols=178  Identities=20%  Similarity=0.186  Sum_probs=142.0

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCC-CCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGP-IPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      ....+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            455888999988876655 55789999999999998765 7777889999999999999998778888889999999999


Q ss_pred             ccC-ccccc-cchhccCCCCCCEEecccC-ccccc-CCccccccccCCCCCccEEEcccC--ccC-ccCc-cCCCCCCCC
Q 042660          155 RKN-KLWGD-IGGIMSELKNVEFVDLSFN-RFHGG-LGVGADNVSSIANTNLEVLDLGDN--GIT-GELP-SFGMLPNLK  226 (261)
Q Consensus       155 ~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~~~l~~~~L~~L~Ls~n--~l~-~~~~-~~~~~~~L~  226 (261)
                      ++| .+++. ++..+..+++|++|++++| .+++. ++..+..++    .+|++|++++|  .++ +..+ .+..+++|+
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~----~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~  225 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS----ETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  225 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC----TTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc----cCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence            999 67653 6777888999999999999 88753 344444443    16799999999  455 3444 667789999


Q ss_pred             EEEcccCc-CcccCcHHHHhCCCCccEEEccCcc
Q 042660          227 VLRLGSNQ-LFGMIPEELLESVIPIQELDLSGNG  259 (261)
Q Consensus       227 ~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~N~  259 (261)
                      .|++++|. +++..+..+ ..+++|+.|++++|.
T Consensus       226 ~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          226 HLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCY  258 (336)
T ss_dssp             EEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCT
T ss_pred             EEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCC
Confidence            99999999 776666554 556899999999983

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=4.7e-17  Score=126.06  Aligned_cols=126  Identities=21%  Similarity=0.216  Sum_probs=92.8

Q ss_pred             EEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660           80 LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL  159 (261)
Q Consensus        80 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  159 (261)
                      +++++++++ .+|..+.  +.+++|++++|.+. .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus        15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            445556666 3454432  47888888888887 5667788888888888888888877777788888888888888888


Q ss_pred             ccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCc
Q 042660          160 WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITG  214 (261)
Q Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~  214 (261)
                      ++..+..|..+++|++|++++|.+++..+..+..+.     +|+.|++++|.+..
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS-----ALSHLAIGANPLYC  140 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-----TCCEEECCSSCEEC
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc-----cccEEEeCCCCeec
Confidence            887777788888888888888888755444455443     45788888887754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=6.9e-19  Score=150.64  Aligned_cols=181  Identities=24%  Similarity=0.228  Sum_probs=114.2

Q ss_pred             CeEEEEcCCCC---ccccCcccc-------cCCCCCCEEECcCCcCcC----CCCccccCCCCCCEEEccCCcCcCCCCc
Q 042660           76 GSVNLSLSGNN---FTGRIVPAL-------GSISSLQYLDLSNNKFIG----PIPGRITDLWGLNYLNLSMNGFKGGFPG  141 (261)
Q Consensus        76 ~~~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~  141 (261)
                      ....|++++|.   +.+.+|..+       ..+++|++|++++|.+.+    .++..+..+++|++|++++|.++...+.
T Consensus        61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  140 (386)
T 2ca6_A           61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA  140 (386)
T ss_dssp             TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred             CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence            44567777643   334444443       566777777777777765    3555666677777777777777543333


Q ss_pred             ccc----CC---------CCCCEEEcccCccc-cccc---hhccCCCCCCEEecccCccccc-----CCccccccccCCC
Q 042660          142 NLR----NL---------QQLKVLDLRKNKLW-GDIG---GIMSELKNVEFVDLSFNRFHGG-----LGVGADNVSSIAN  199 (261)
Q Consensus       142 ~~~----~l---------~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~~-----~p~~~~~~~~l~~  199 (261)
                      .+.    .+         ++|++|++++|.+. ...+   ..+..+++|++|++++|.++..     .+..+..+     
T Consensus       141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-----  215 (386)
T 2ca6_A          141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-----  215 (386)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-----
T ss_pred             HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-----
Confidence            232    22         67777777777775 2333   3555677788888887777521     12133333     


Q ss_pred             CCccEEEcccCccC----ccCc-cCCCCCCCCEEEcccCcCcccC----cHHHH-hCCCCccEEEccCccCC
Q 042660          200 TNLEVLDLGDNGIT----GELP-SFGMLPNLKVLRLGSNQLFGMI----PEELL-ESVIPIQELDLSGNGFT  261 (261)
Q Consensus       200 ~~L~~L~Ls~n~l~----~~~~-~~~~~~~L~~L~L~~n~l~~~~----~~~~~-~~~~~L~~L~L~~N~ls  261 (261)
                      ++|+.|+|++|.++    +.+| .+..+++|+.|+|++|.+++..    +..+. ..+++|+.|++++|.++
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            46688888888885    3444 6777888888888888887542    22221 12568888888888764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=2.7e-17  Score=124.44  Aligned_cols=133  Identities=22%  Similarity=0.224  Sum_probs=115.0

Q ss_pred             CCCCCCEEEccCCcCc-CCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCC
Q 042660          121 DLWGLNYLNLSMNGFK-GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN  199 (261)
Q Consensus       121 ~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~  199 (261)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+.    
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----   95 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP----   95 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT----
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC----
Confidence            3478999999999998 67888889999999999999999776  7789999999999999999877776655554    


Q ss_pred             CCccEEEcccCccCccC--ccCCCCCCCCEEEcccCcCcccCcH---HHHhCCCCccEEEccCccCC
Q 042660          200 TNLEVLDLGDNGITGEL--PSFGMLPNLKVLRLGSNQLFGMIPE---ELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       200 ~~L~~L~Ls~n~l~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~~L~~L~L~~N~ls  261 (261)
                       +|+.|++++|.+++.+  +.+..+++|+.|++++|.+++ ++.   ..+..+++|+.|++++|.++
T Consensus        96 -~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           96 -NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             -TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             -CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh
Confidence             5699999999999864  478899999999999999994 554   56778899999999999763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=8e-17  Score=145.10  Aligned_cols=164  Identities=27%  Similarity=0.310  Sum_probs=134.3

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .+.+..+.+.+..+  +..+++|+.|++++|.+... + .+..+++|++|+|++|.+++..|  +..+++|+.|++++|.
T Consensus        25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             HHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence            34455555554333  45788999999999999854 3 58899999999999999997544  8899999999999999


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCccc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM  238 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~  238 (261)
                      +.+.  ..+..+++|+.|++++|.+.+.  ..+..+     ++|+.|+|++|.+++. +.+..+++|+.|+|++|.+++.
T Consensus        99 l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-----~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           99 IKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHL-----PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGC-----TTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CCCC--hhhccCCCCCEEEecCCCCCCC--ccccCC-----CccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc
Confidence            9763  3688999999999999999752  233333     5779999999999966 7788899999999999999964


Q ss_pred             CcHHHHhCCCCccEEEccCccCC
Q 042660          239 IPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       239 ~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      .|   +..+++|+.|+|++|+|+
T Consensus       169 ~~---l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          169 VP---LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             GG---GTTCTTCCEEECCSSCCC
T ss_pred             hh---hccCCCCCEEECcCCCCC
Confidence            44   667889999999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=3.6e-16  Score=121.11  Aligned_cols=130  Identities=25%  Similarity=0.305  Sum_probs=113.1

Q ss_pred             CEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccC
Q 042660          102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN  181 (261)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  181 (261)
                      +.+++++|.+. .+|..+.  +++++|++++|.++ .+|..|..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57899999998 4555443  58999999999998 57889999999999999999999998899999999999999999


Q ss_pred             cccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCc
Q 042660          182 RFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIP  240 (261)
Q Consensus       182 ~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~  240 (261)
                      .+++..|..+..+.     +|+.|+|++|.+++.++ .+..+++|+.|++++|.+.....
T Consensus        89 ~l~~i~~~~f~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           89 RLRCIPPRTFDGLK-----SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCCBCCTTTTTTCT-----TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             ccCEeCHHHhCCCC-----CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            99987777777664     56999999999998777 68899999999999999875443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=3.5e-17  Score=121.34  Aligned_cols=127  Identities=24%  Similarity=0.310  Sum_probs=66.0

Q ss_pred             CCCCEEECcCCcCc-CCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEe
Q 042660           99 SSLQYLDLSNNKFI-GPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVD  177 (261)
Q Consensus        99 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  177 (261)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34555556555555 44555555555555555555555543  4445555555555555555444444444444444444


Q ss_pred             cccCcccccCCccccccccCCCCCccEEEcccCccCccC--ccCCCCCCCCEEEcccCcCcccCc--HHHHhCCCCccEE
Q 042660          178 LSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL--PSFGMLPNLKVLRLGSNQLFGMIP--EELLESVIPIQEL  253 (261)
Q Consensus       178 l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L  253 (261)
                      +                             ++|.+++.+  ..+..+++|+.|++++|.+++..+  ...+..+++|+.|
T Consensus        95 l-----------------------------s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           95 L-----------------------------SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             C-----------------------------TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred             C-----------------------------CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence            4                             444444321  244555666666666666653322  1344555666666


Q ss_pred             Ecc
Q 042660          254 DLS  256 (261)
Q Consensus       254 ~L~  256 (261)
                      |++
T Consensus       146 ~l~  148 (149)
T 2je0_A          146 DGY  148 (149)
T ss_dssp             TTB
T ss_pred             cCC
Confidence            665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.70  E-value=4.4e-16  Score=118.77  Aligned_cols=132  Identities=20%  Similarity=0.223  Sum_probs=112.2

Q ss_pred             CCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660          101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF  180 (261)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  180 (261)
                      .+.++++++.+.. +|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            5788999999884 44433  36899999999999987777789999999999999999888888889999999999999


Q ss_pred             CcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCc
Q 042660          181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIP  240 (261)
Q Consensus       181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~  240 (261)
                      |.+++..+..+..+.     +|++|++++|++++.++ .+..+++|+.|++++|.+++..+
T Consensus        86 N~l~~~~~~~~~~l~-----~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLT-----QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCc-----ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999876665555554     56999999999997777 57889999999999999987655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=5.3e-17  Score=120.36  Aligned_cols=108  Identities=25%  Similarity=0.349  Sum_probs=73.0

Q ss_pred             CCCCEEEcccCccc-cccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCC
Q 042660          147 QQLKVLDLRKNKLW-GDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPN  224 (261)
Q Consensus       147 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~  224 (261)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+     ++|++|++++|.+++.+| .+..+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-----~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKL-----NKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCC-----TTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcC-----CCCCEEECCCCcccchHHHHhhhCCC
Confidence            44555566666554 45555555566666666666666533  223332     456888888888877566 5666899


Q ss_pred             CCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          225 LKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       225 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      |+.|++++|.+++......+..+++|+.|++++|+++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            9999999999985222355677889999999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.70  E-value=1e-15  Score=133.63  Aligned_cols=120  Identities=24%  Similarity=0.308  Sum_probs=63.6

Q ss_pred             CCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEec
Q 042660           99 SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDL  178 (261)
Q Consensus        99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  178 (261)
                      ++|++|++++|.+.+ +| .+.++++|++|++++|.+++ +|..+   .+|++|++++|.+.+ +| .++.+++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            356666666666654 44 35666666666666666654 34322   356666666666654 33 3556666666666


Q ss_pred             ccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCc
Q 042660          179 SFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       179 ~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~  236 (261)
                      ++|.+++ +|...        .+|++|++++|.++ .+|.++.+++|+.|++++|.++
T Consensus       203 ~~N~l~~-l~~~~--------~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          203 DNNSLKK-LPDLP--------LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CSSCCSS-CCCCC--------TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCS
T ss_pred             CCCcCCc-CCCCc--------CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCC
Confidence            6666553 22211        23455555555555 3334445555555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=5.7e-16  Score=125.75  Aligned_cols=162  Identities=23%  Similarity=0.317  Sum_probs=117.5

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .++++++.+++..  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.
T Consensus        23 ~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           23 KQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred             HHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence            4566677776433  46677888888888888874 34 57778888888888888886433  7888888888888888


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCccc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM  238 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~  238 (261)
                      +.+. +.. .. ++|++|++++|.+++. + .+..+     ++|+.|++++|++++. +.+..+++|+.|++++|.+++.
T Consensus        97 l~~l-~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l-----~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           97 LKNL-NGI-PS-ACLSRLFLDNNELRDT-D-SLIHL-----KNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSCC-TTC-CC-SSCCEEECCSSCCSBS-G-GGTTC-----TTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC
T ss_pred             cCCc-Ccc-cc-CcccEEEccCCccCCC-h-hhcCc-----ccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch
Confidence            8663 322 22 7888888888888742 1 23333     4668888888888865 4667788888888888888754


Q ss_pred             CcHHHHhCCCCccEEEccCccC
Q 042660          239 IPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       239 ~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                         ..+..+++|+.|++++|++
T Consensus       166 ---~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          166 ---GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             ---TTSTTCCCCCEEEEEEEEE
T ss_pred             ---HHhccCCCCCEEeCCCCcc
Confidence               3345667888888888865

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.69  E-value=8.7e-16  Score=134.14  Aligned_cols=97  Identities=22%  Similarity=0.260  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ...+|++++|++++ +| .+..+++|++|++++|++++ +|..   ..+|++|++++|.+++ +| .++.+++|++|+++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            55688999999986 66 58999999999999999986 4443   3478888888888886 55 57788888888888


Q ss_pred             cCccccccchhccCCCCCCEEecccCccc
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFH  184 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  184 (261)
                      +|.+.+ +|..   .++|++|++++|.+.
T Consensus       204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          204 NNSLKK-LPDL---PLSLESIVAGNNILE  228 (454)
T ss_dssp             SSCCSS-CCCC---CTTCCEEECCSSCCS
T ss_pred             CCcCCc-CCCC---cCcccEEECcCCcCC
Confidence            887765 2221   135666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.68  E-value=1.7e-15  Score=136.77  Aligned_cols=57  Identities=26%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             CCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       200 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      ++|+.|++++|.+++.++   .+++|+.|++++|.|+ .+|.. +..+++|+.|++++|+++
T Consensus       241 ~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~-l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          241 SELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGG-GGGSCTTCEEECCSCCCC
T ss_pred             CcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHH-HhhccccCEEEecCCCCC
Confidence            345666666666653322   4567888888888887 67765 455678888888888874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=7.8e-18  Score=154.95  Aligned_cols=118  Identities=24%  Similarity=0.251  Sum_probs=78.9

Q ss_pred             CcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCC
Q 042660           91 IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSEL  170 (261)
Q Consensus        91 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  170 (261)
                      .+..+..+..|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+..+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3556667777777777777776 45555557777777777777777 56777777777777777777776 557777777


Q ss_pred             CCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc
Q 042660          171 KNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP  217 (261)
Q Consensus       171 ~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~  217 (261)
                      ++|++|+|++|.++ .+|..+..+.     +|+.|+|++|.+++.+|
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~-----~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLC-----NLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCT-----TCCCEECTTSCCCSHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCC-----CccEEeCCCCccCCCCh
Confidence            77777777777775 5565555553     44777777777776555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.67  E-value=6.4e-18  Score=147.64  Aligned_cols=59  Identities=24%  Similarity=0.228  Sum_probs=28.6

Q ss_pred             CccEEEcccCccCccCc-cCC-----CCCCCCEEEcccCcCcc----cCcHHHHhCCCCccEEEccCccC
Q 042660          201 NLEVLDLGDNGITGELP-SFG-----MLPNLKVLRLGSNQLFG----MIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       201 ~L~~L~Ls~n~l~~~~~-~~~-----~~~~L~~L~L~~n~l~~----~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +|++|++++|.+++..+ .+.     ..++|+.|++++|.+++    .++..+ ..+++|+.|++++|++
T Consensus       342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL-LANHSLRELDLSNNCL  410 (461)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH-HHCCCCCEEECCSSSC
T ss_pred             CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH-HhCCCccEEECCCCCC
Confidence            44555555555544322 111     13456666666665553    333332 2345666666666655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.66  E-value=9.2e-16  Score=116.35  Aligned_cols=105  Identities=25%  Similarity=0.283  Sum_probs=92.4

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      ++++++|.++. +|..+.  +.+++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            46667778874 565553  789999999999999989999999999999999999998777778999999999999999


Q ss_pred             cccccchhccCCCCCCEEecccCccccc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGG  186 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~  186 (261)
                      +.+..+..+..+++|++|++++|.+...
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9988888899999999999999998754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.66  E-value=3.2e-15  Score=134.93  Aligned_cols=165  Identities=21%  Similarity=0.171  Sum_probs=104.8

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++|++++ +|.   .+++|++|++++|.+++. |.   .+++|++|++++|.++. +|..   +++|++|+++
T Consensus        82 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls  149 (622)
T 3g06_A           82 ELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVS  149 (622)
T ss_dssp             TCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred             CCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECc
Confidence            45578888888874 444   567777788877777753 32   34556666666666553 3332   2455555555


Q ss_pred             cCccccc--cchhc--------------cCCCCCCEEecccCcccccCCccccccccC------------CCCCccEEEc
Q 042660          156 KNKLWGD--IGGIM--------------SELKNVEFVDLSFNRFHGGLGVGADNVSSI------------ANTNLEVLDL  207 (261)
Q Consensus       156 ~n~l~~~--~~~~~--------------~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l------------~~~~L~~L~L  207 (261)
                      +|.+.+.  .+..+              ..+++|+.|++++|.+++ +|..+..+..+            ..++|+.|++
T Consensus       150 ~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~L  228 (622)
T 3g06_A          150 DNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIV  228 (622)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred             CCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEc
Confidence            5555431  11111              123677777777777764 33322222221            1256899999


Q ss_pred             ccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          208 GDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       208 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      ++|.+++.+   ..+++|+.|++++|.|+ .+|.    .+++|+.|++++|.|+
T Consensus       229 s~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          229 SGNRLTSLP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             CSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC
T ss_pred             cCCccCcCC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC
Confidence            999998643   44578999999999998 6776    4578999999999875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=7.7e-16  Score=130.05  Aligned_cols=172  Identities=20%  Similarity=0.141  Sum_probs=136.4

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCE-EEccc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLKV-LDLRK  156 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-L~l~~  156 (261)
                      +++.++++++ .+|..+  .+++++|++++|+|+.+.+.+|.++++|++|++++|.+.+.+| ..|.+++++++ +.+..
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            5778888888 566655  3579999999999997777889999999999999999876554 56888988775 56778


Q ss_pred             CccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEccc-CccCccCc-cCCCCC-CCCEEEcccC
Q 042660          157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGD-NGITGELP-SFGMLP-NLKVLRLGSN  233 (261)
Q Consensus       157 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~-n~l~~~~~-~~~~~~-~L~~L~L~~n  233 (261)
                      |++....|..|..+++|++|++++|.+.+..+..+...     .++..+++.+ +.+....+ .+.... .++.|++++|
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-----LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB-----SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhccc-----chhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence            99998889999999999999999999975544333322     3568888876 56776555 666664 6899999999


Q ss_pred             cCcccCcHHHHhCCCCccEEEccC-ccC
Q 042660          234 QLFGMIPEELLESVIPIQELDLSG-NGF  260 (261)
Q Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~-N~l  260 (261)
                      .|+ .++..+|.. .+|+.+++++ |.+
T Consensus       165 ~i~-~i~~~~f~~-~~L~~l~l~~~n~l  190 (350)
T 4ay9_X          165 GIQ-EIHNSAFNG-TQLDELNLSDNNNL  190 (350)
T ss_dssp             CCC-EECTTSSTT-EEEEEEECTTCTTC
T ss_pred             ccc-CCChhhccc-cchhHHhhccCCcc
Confidence            998 787777653 5799999985 554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.65  E-value=1.1e-17  Score=146.16  Aligned_cols=186  Identities=18%  Similarity=0.110  Sum_probs=121.3

Q ss_pred             CeEEEEcCCCCccccCccccc-----CCCCCCEEECcCCcCcCC----CCccccCCCCCCEEEccCCcCcCCC-----Cc
Q 042660           76 GSVNLSLSGNNFTGRIVPALG-----SISSLQYLDLSNNKFIGP----IPGRITDLWGLNYLNLSMNGFKGGF-----PG  141 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----p~  141 (261)
                      ...+|++++|.+++..+..+.     ..++|++|++++|.++..    ++..+..+++|++|++++|.++...     +.
T Consensus       171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  250 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG  250 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence            445788888887754444333     355788888888887753    4555667788888888888776432     22


Q ss_pred             cccCCCCCCEEEcccCccccc----cchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc--
Q 042660          142 NLRNLQQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE--  215 (261)
Q Consensus       142 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~--  215 (261)
                      .+..+++|++|++++|.++..    ++..+..+++|++|++++|.+.+..+..+........++|++|++++|.+++.  
T Consensus       251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  330 (461)
T 1z7x_W          251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC  330 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence            233567788888888877654    45666667888888888887765444444333222224678888888887754  


Q ss_pred             --Cc-cCCCCCCCCEEEcccCcCcccCcHHHHhC----CCCccEEEccCccCC
Q 042660          216 --LP-SFGMLPNLKVLRLGSNQLFGMIPEELLES----VIPIQELDLSGNGFT  261 (261)
Q Consensus       216 --~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~L~~N~ls  261 (261)
                        .+ .+..+++|+.|++++|.+++..+..+...    .++|+.|++++|.++
T Consensus       331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence              23 45566778888888887775444444321    347888888888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=1.4e-15  Score=115.87  Aligned_cols=135  Identities=19%  Similarity=0.152  Sum_probs=105.0

Q ss_pred             ccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCC
Q 042660           93 PALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKN  172 (261)
Q Consensus        93 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  172 (261)
                      ..+....+|++|++++|.+... +......++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3466788899999999999854 54333344999999999999864  67888999999999999998776666788999


Q ss_pred             CCEEecccCcccccCCc--cccccccCCCCCccEEEcccCccCccCcc----CCCCCCCCEEEcccCcCc
Q 042660          173 VEFVDLSFNRFHGGLGV--GADNVSSIANTNLEVLDLGDNGITGELPS----FGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       173 L~~L~l~~n~l~~~~p~--~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~----~~~~~~L~~L~L~~n~l~  236 (261)
                      |++|++++|.++ .+|.  .+..+     ++|+.|++++|.++..++.    +..+++|+.|+++.|.+.
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l-----~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASL-----KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGC-----TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcC-----CCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999999985 3333  33333     4669999999998855443    777888999999888776

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=9.7e-16  Score=116.82  Aligned_cols=128  Identities=22%  Similarity=0.208  Sum_probs=81.5

Q ss_pred             CeEEEEcCCCCccccCcccccCC-CCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSI-SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      ....|++++|+++. ++. +..+ ++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            45577777777774 333 3333 3777777777777754  45667777777777777777543344467777777777


Q ss_pred             ccCccccccch--hccCCCCCCEEecccCcccccCCcc----ccccccCCCCCccEEEcccCccCc
Q 042660          155 RKNKLWGDIGG--IMSELKNVEFVDLSFNRFHGGLGVG----ADNVSSIANTNLEVLDLGDNGITG  214 (261)
Q Consensus       155 ~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~----~~~~~~l~~~~L~~L~Ls~n~l~~  214 (261)
                      ++|.+.. +|.  .+..+++|++|++++|.++. .|..    +..+     ++|+.|++++|....
T Consensus        96 ~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l-----~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           96 TNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKV-----PQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHC-----TTCSEETTEECCHHH
T ss_pred             CCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHC-----CccceeCCCcCCHHH
Confidence            7777733 343  56677777777777777753 3332    3333     345777777776653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.61  E-value=8.1e-15  Score=111.52  Aligned_cols=104  Identities=24%  Similarity=0.257  Sum_probs=92.8

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .+++++|+++ .+|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            6888889886 5666554  789999999999999999999999999999999999998666677899999999999999


Q ss_pred             cccccchhccCCCCCCEEecccCcccc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHG  185 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (261)
                      +.+..+..+..+++|++|++++|.+..
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccc
Confidence            988777779999999999999999974

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=3.9e-18  Score=132.66  Aligned_cols=149  Identities=25%  Similarity=0.360  Sum_probs=91.9

Q ss_pred             cCCCCCCEEECcCCcCcCCCCc------cccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccC
Q 042660           96 GSISSLQYLDLSNNKFIGPIPG------RITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSE  169 (261)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  169 (261)
                      .....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+. .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3344555555666666555554      56666777777777777665 45 5666677777777777765 44555555


Q ss_pred             CCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCcccCcH------
Q 042660          170 LKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPE------  241 (261)
Q Consensus       170 l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~------  241 (261)
                      +++|++|++++|.+++ +| .+..+     ++|+.|++++|.+++..+  .+..+++|++|++++|.+++.+|.      
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l-----~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  164 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKL-----VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE  164 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHH-----HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccC-----CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence            6677777777777654 22 23333     345777777777765433  566677777777777777654332      


Q ss_pred             ---HHHhCCCCccEEE
Q 042660          242 ---ELLESVIPIQELD  254 (261)
Q Consensus       242 ---~~~~~~~~L~~L~  254 (261)
                         .++..+++|+.||
T Consensus       165 ~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          165 YRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHCSSCSEEC
T ss_pred             HHHHHHHhCCCcEEEC
Confidence               2345566777776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=2.5e-14  Score=128.01  Aligned_cols=158  Identities=20%  Similarity=0.198  Sum_probs=120.5

Q ss_pred             cccCcccccCCCCCCEEE-CcCCcCcCCCCc-----ccc--CCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660           88 TGRIVPALGSISSLQYLD-LSNNKFIGPIPG-----RIT--DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL  159 (261)
Q Consensus        88 ~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~-----~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  159 (261)
                      .+..|..+..+++|+.|+ ++.|.+......     .+.  ....|++|++++|.+++ +|. ++.+++|+.|++++|.+
T Consensus       398 ~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l  475 (567)
T 1dce_A          398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL  475 (567)
T ss_dssp             GGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred             ccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence            334455667778888887 555543211000     000  11258999999999997 676 99999999999999999


Q ss_pred             ccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC-c-cCCCCCCCCEEEcccCcCcc
Q 042660          160 WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL-P-SFGMLPNLKVLRLGSNQLFG  237 (261)
Q Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~-~-~~~~~~~L~~L~L~~n~l~~  237 (261)
                      + .+|..++.+++|+.|++++|.+++ +| .+..+     ++|+.|+|++|++++.. | .+..+++|+.|+|++|.+++
T Consensus       476 ~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l-----~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          476 R-ALPPALAALRCLEVLQASDNALEN-VD-GVANL-----PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             C-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTC-----SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             c-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCC-----CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            7 778899999999999999999986 55 55555     46799999999999885 6 89999999999999999986


Q ss_pred             cCcH--HHHhCCCCccEEEc
Q 042660          238 MIPE--ELLESVIPIQELDL  255 (261)
Q Consensus       238 ~~~~--~~~~~~~~L~~L~L  255 (261)
                      ..|.  .++..+++|+.|++
T Consensus       548 ~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          548 EEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSSCTTHHHHHCTTCSEEEC
T ss_pred             CccHHHHHHHHCcccCccCC
Confidence            5442  34555788998875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=2.3e-14  Score=128.26  Aligned_cols=121  Identities=22%  Similarity=0.268  Sum_probs=101.2

Q ss_pred             CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660          100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS  179 (261)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  179 (261)
                      .|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.+++ +| .++.+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            58899999999986 565 888999999999999998 688899999999999999999977 45 78899999999999


Q ss_pred             cCcccccC-CccccccccCCCCCccEEEcccCccCccCccC----CCCCCCCEEEc
Q 042660          180 FNRFHGGL-GVGADNVSSIANTNLEVLDLGDNGITGELPSF----GMLPNLKVLRL  230 (261)
Q Consensus       180 ~n~l~~~~-p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~----~~~~~L~~L~L  230 (261)
                      +|.+++.. |..+..+.     +|+.|+|++|.+++.+|..    ..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~-----~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCP-----RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCT-----TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCC-----CCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99998776 77777765     4599999999999877633    23788888864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=8.3e-14  Score=105.49  Aligned_cols=108  Identities=24%  Similarity=0.190  Sum_probs=84.8

Q ss_pred             CCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660          101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF  180 (261)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  180 (261)
                      .+.+++++|.+.. +|..+  .+++++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4688999998884 55544  37888999999999887788888899999999999999887777788888888888888


Q ss_pred             CcccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660          181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL  216 (261)
Q Consensus       181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  216 (261)
                      |.+++..+..+..+.     +|+.|+|++|.++...
T Consensus        88 N~l~~~~~~~~~~l~-----~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLK-----SLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCT-----TCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCC-----CCCEEEeCCCCCCCCc
Confidence            888765555555554     4588888888877543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=1.8e-13  Score=104.05  Aligned_cols=107  Identities=23%  Similarity=0.231  Sum_probs=84.4

Q ss_pred             CEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccC
Q 042660          102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN  181 (261)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  181 (261)
                      +.+++++|.+. .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67899999887 4565543  78899999999998877888889999999999999998877777788888888888888


Q ss_pred             cccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660          182 RFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL  216 (261)
Q Consensus       182 ~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  216 (261)
                      .+++..+..+..+.     +|+.|+|++|.+....
T Consensus        92 ~l~~l~~~~~~~l~-----~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLK-----SLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCT-----TCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhcccc-----CCCEEEeCCCCccccc
Confidence            88755444455553     4588888888877543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.51  E-value=9.5e-14  Score=116.93  Aligned_cols=110  Identities=21%  Similarity=0.227  Sum_probs=95.4

Q ss_pred             C-CCCcceEEcCCCCCeEEEEcCCC-CccccCcccccCCCCCCEEECcC-CcCcCCCCccccCCCCCCEEEccCCcCcCC
Q 042660           62 C-PVSWTGVSCDPESGSVNLSLSGN-NFTGRIVPALGSISSLQYLDLSN-NKFIGPIPGRITDLWGLNYLNLSMNGFKGG  138 (261)
Q Consensus        62 c-~~~~~gv~c~~~~~~~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  138 (261)
                      | .|.|..|.|.           ++ +++. +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++.
T Consensus         5 c~~C~~~~v~~~-----------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~   71 (347)
T 2ifg_A            5 CCPHGSSGLRCT-----------RDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV   71 (347)
T ss_dssp             SCCSSSSCEECC-----------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE
T ss_pred             CccccCCEEEcC-----------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee
Confidence            5 6688777775           34 5664 677 99999999999996 999988888999999999999999999998


Q ss_pred             CCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccc
Q 042660          139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG  185 (261)
Q Consensus       139 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (261)
                      .|..|..+++|+.|+|++|++.+..+..+..++ |+.|++.+|.+..
T Consensus        72 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            888999999999999999999887777777666 9999999999863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=2.9e-17  Score=127.73  Aligned_cols=146  Identities=22%  Similarity=0.194  Sum_probs=115.3

Q ss_pred             EEEcCCCCccccCcc------cccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEE
Q 042660           79 NLSLSGNNFTGRIVP------ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVL  152 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  152 (261)
                      .++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus        22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL   98 (198)
T ss_dssp             CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEE
T ss_pred             CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEE
Confidence            344444555554444      88999999999999999997 56 7889999999999999998 478777778999999


Q ss_pred             EcccCccccccchhccCCCCCCEEecccCcccccCC-ccccccccCCCCCccEEEcccCccCccCcc-----------CC
Q 042660          153 DLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG-VGADNVSSIANTNLEVLDLGDNGITGELPS-----------FG  220 (261)
Q Consensus       153 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~-----------~~  220 (261)
                      ++++|.+.+. | .+..+++|++|++++|.+++..+ ..+..+     ++|++|++++|.+.+..|.           +.
T Consensus        99 ~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l-----~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           99 WISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAAL-----DKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             EEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTT-----TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             ECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcC-----CCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            9999999773 4 57888999999999999974221 223333     5679999999999876553           67


Q ss_pred             CCCCCCEEEcccCcCc
Q 042660          221 MLPNLKVLRLGSNQLF  236 (261)
Q Consensus       221 ~~~~L~~L~L~~n~l~  236 (261)
                      .+++|+.|+  +|.++
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            889999887  67665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=9.3e-14  Score=116.24  Aligned_cols=47  Identities=15%  Similarity=0.080  Sum_probs=29.5

Q ss_pred             CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccC
Q 042660           98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRN  145 (261)
Q Consensus        98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  145 (261)
                      +++|+.+++++ .+..+.+.+|.++++|+.+++++|.+....+.+|.+
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~  146 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALAD  146 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCT
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcC
Confidence            67777777776 666666666777777777777777654333333433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.43  E-value=3.3e-15  Score=127.09  Aligned_cols=183  Identities=16%  Similarity=0.110  Sum_probs=116.7

Q ss_pred             CeEEEEcCCCCccccCcccccC-----CCCCCEEECcCCcCcCCCCccc-cCCCCCCEEEccCCcCcCCCCccc-----c
Q 042660           76 GSVNLSLSGNNFTGRIVPALGS-----ISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKGGFPGNL-----R  144 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~-----~  144 (261)
                      ....|++++|.++......+..     ...|++|++++|.+.......+ ..+++|++|++++|.++......+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            4458999999987644333322     2689999999998864333333 345678999999998875433333     3


Q ss_pred             CCCCCCEEEcccCccccc----cchhccCCCCCCEEecccCcccccCCccccc-cccCCCCCccEEEcccCccCccCc--
Q 042660          145 NLQQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFHGGLGVGADN-VSSIANTNLEVLDLGDNGITGELP--  217 (261)
Q Consensus       145 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-~~~l~~~~L~~L~Ls~n~l~~~~~--  217 (261)
                      ..++|++|++++|.++..    ++..+...++|++|++++|.+++.....+.. +..  .++|++|+|++|.+++...  
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~--~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR--NRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG--CSCCCEEECCSSCCCHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc--CCCcCeEECCCCCCCHHHHHH
Confidence            467899999999988653    4445577888999999999887432211111 111  2467999999999875322  


Q ss_pred             ---cCCCCCCCCEEEcccCcCcccCcHHHHhCCC-C---ccEEE--ccCccC
Q 042660          218 ---SFGMLPNLKVLRLGSNQLFGMIPEELLESVI-P---IQELD--LSGNGF  260 (261)
Q Consensus       218 ---~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~---L~~L~--L~~N~l  260 (261)
                         .+...+.|+.|+|++|.|++.....+..... .   ++.+.  +..|.+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence               3445678999999999988554444433221 2   56665  555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.41  E-value=7.7e-13  Score=110.64  Aligned_cols=154  Identities=17%  Similarity=0.104  Sum_probs=101.9

Q ss_pred             CCCCCEEECcCCcCc--------------------CCCCccccC--------CCCCCEEEccCCcCcCCCCccccCCCCC
Q 042660           98 ISSLQYLDLSNNKFI--------------------GPIPGRITD--------LWGLNYLNLSMNGFKGGFPGNLRNLQQL  149 (261)
Q Consensus        98 l~~L~~L~l~~n~l~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~p~~~~~l~~L  149 (261)
                      +++|+.||+++|++.                    .+.+..|.+        +++|+.+++.+ .++...+.+|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            566777777777666                    233456677        99999999999 8887778889999999


Q ss_pred             CEEEcccCccccccchhccC------------------------------------------------------------
Q 042660          150 KVLDLRKNKLWGDIGGIMSE------------------------------------------------------------  169 (261)
Q Consensus       150 ~~L~l~~n~l~~~~~~~~~~------------------------------------------------------------  169 (261)
                      +.+++.+|.+....+..|..                                                            
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            99999999764433333333                                                            


Q ss_pred             ------------------CCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCC-EEE
Q 042660          170 ------------------LKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLK-VLR  229 (261)
Q Consensus       170 ------------------l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~-~L~  229 (261)
                                        +++|+.+++++|.++...+..+..+.     +|+++++.+| ++...+ .|..+.+|+ .++
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~-----~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~  280 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK-----YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE  280 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT-----TCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC-----CCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence                              45666666666666543334444443     4466776666 554444 566666676 777


Q ss_pred             cccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          230 LGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +.+ .++ .++...|.++.+|+.+++++|.+
T Consensus       281 l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          281 LPA-SVT-AIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             ECT-TCC-EECTTTTTTCTTEEEEEECSSCC
T ss_pred             Ecc-cce-EEchhhhhCCccCCEEEeCCCcc
Confidence            666 555 56666666667777777766654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.38  E-value=6.9e-15  Score=125.11  Aligned_cols=163  Identities=18%  Similarity=0.093  Sum_probs=105.5

Q ss_pred             CCCCCEEECcCCcCcCCCCccc----c-CCCCCCEEEccCCcCcCCCCccc-cCCCCCCEEEcccCccccccchhc----
Q 042660           98 ISSLQYLDLSNNKFIGPIPGRI----T-DLWGLNYLNLSMNGFKGGFPGNL-RNLQQLKVLDLRKNKLWGDIGGIM----  167 (261)
Q Consensus        98 l~~L~~L~l~~n~l~~~~~~~~----~-~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~~~~~----  167 (261)
                      .+.|+.|++++|.++......+    . ..++|++|++++|.++......+ ..+.+|+.|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3568888888888875433333    2 23688888888888864333333 235678888888888866544444    


Q ss_pred             -cCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC----c-cCCCCCCCCEEEcccCcCcccCcH
Q 042660          168 -SELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL----P-SFGMLPNLKVLRLGSNQLFGMIPE  241 (261)
Q Consensus       168 -~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~----~-~~~~~~~L~~L~L~~n~l~~~~~~  241 (261)
                       ...++|+.|++++|.++......+...-. ..++|++|+|++|.+++..    + .+...++|+.|+|++|.|++....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             34678888888888886432222211100 1246788888888887532    2 456667888888888888754333


Q ss_pred             HHH---hCCCCccEEEccCccCC
Q 042660          242 ELL---ESVIPIQELDLSGNGFT  261 (261)
Q Consensus       242 ~~~---~~~~~L~~L~L~~N~ls  261 (261)
                      .+.   ...++|++|||++|+|+
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHhCCCCCEEeccCCCCC
Confidence            332   23467888888888874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=1.2e-12  Score=110.06  Aligned_cols=106  Identities=17%  Similarity=0.110  Sum_probs=83.3

Q ss_pred             CEEECcCC-cCcCCCCccccCCCCCCEEEccC-CcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660          102 QYLDLSNN-KFIGPIPGRITDLWGLNYLNLSM-NGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS  179 (261)
Q Consensus       102 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  179 (261)
                      ..++.+++ .++. +|. +..+.+|++|+|++ |.+++..+..|..+++|+.|+|++|.+.+..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35678877 7874 666 88888899999985 88887777788889999999999999988888888888999999999


Q ss_pred             cCcccccCCccccccccCCCCCccEEEcccCccCcc
Q 042660          180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE  215 (261)
Q Consensus       180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~  215 (261)
                      +|.+++..+..+..+      .|+.|+|.+|.+...
T Consensus        89 ~N~l~~~~~~~~~~~------~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSWKTVQGL------SLQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCSTTTCSC------CCCEEECCSSCCCCC
T ss_pred             CCccceeCHHHcccC------CceEEEeeCCCccCC
Confidence            988875544443332      268888888888753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.38  E-value=2.8e-14  Score=128.29  Aligned_cols=62  Identities=19%  Similarity=0.131  Sum_probs=49.6

Q ss_pred             CCccEEEcccCccCcc-Cc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          200 TNLEVLDLGDNGITGE-LP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       200 ~~L~~L~Ls~n~l~~~-~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      ++|+.|++++|++++. .+ .+..+++|+.|++++|.+++.....+...+++|+.|++++|+++
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            5689999999988763 34 45778899999999999886656666667789999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.26  E-value=1.9e-12  Score=116.33  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=61.4

Q ss_pred             eEEEEcCCCC-ccc-cCcccccCCCCCCEEECcCCcCcCC----CCccccCCCCCCEEEccCCcCcC----CCCccccCC
Q 042660           77 SVNLSLSGNN-FTG-RIVPALGSISSLQYLDLSNNKFIGP----IPGRITDLWGLNYLNLSMNGFKG----GFPGNLRNL  146 (261)
Q Consensus        77 ~~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l  146 (261)
                      ..+|++++|. +.. .++.....+++|++|++++|.+.+.    ++..+..+++|++|++++|.+++    .++..+..+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            4567777665 221 1222234567777777777776654    22234556777777777777752    233344566


Q ss_pred             CCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660          147 QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF  180 (261)
Q Consensus       147 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  180 (261)
                      ++|+.|++++|.+.+ ++..+..+++|+.|+++.
T Consensus       220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred             CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence            777777777776644 445556666666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.16  E-value=6.8e-12  Score=112.72  Aligned_cols=180  Identities=14%  Similarity=0.071  Sum_probs=105.3

Q ss_pred             CeEEEEcCCCCccccCccccc-CCCCCCEEECcCC-cCcCC-CCccccCCCCCCEEEccCCcCcCCCCccc----cCCCC
Q 042660           76 GSVNLSLSGNNFTGRIVPALG-SISSLQYLDLSNN-KFIGP-IPGRITDLWGLNYLNLSMNGFKGGFPGNL----RNLQQ  148 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~----~~l~~  148 (261)
                      ...+|+++++.+++..+..+. .+++|++|++++| .+... ++..+..+++|++|++++|.+++..+..+    ..+++
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~  185 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS  185 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence            556788888888776666564 5778888888887 44422 33333467888888888887765444333    35567


Q ss_pred             CCEEEcccCc--cccc-cchhccCCCCCCEEecccCcccccCCccccccccC----------------------------
Q 042660          149 LKVLDLRKNK--LWGD-IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI----------------------------  197 (261)
Q Consensus       149 L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l----------------------------  197 (261)
                      |+.|++++|.  +... ++.....+++|++|++++|...+.++..+.....+                            
T Consensus       186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~  265 (594)
T 2p1m_B          186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK  265 (594)
T ss_dssp             CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCT
T ss_pred             CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCC
Confidence            8888888775  2211 22223446777777777662111111111110000                            


Q ss_pred             ---------------------CCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEE
Q 042660          198 ---------------------ANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD  254 (261)
Q Consensus       198 ---------------------~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  254 (261)
                                           ..++|++|++++|.+++...  .+..+++|+.|++++| +++.....+...+++|+.|+
T Consensus       266 ~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~  344 (594)
T 2p1m_B          266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR  344 (594)
T ss_dssp             TCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred             CcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence                                 12467777777777654322  3456777777777777 44333344444566777777


Q ss_pred             cc
Q 042660          255 LS  256 (261)
Q Consensus       255 L~  256 (261)
                      ++
T Consensus       345 L~  346 (594)
T 2p1m_B          345 VF  346 (594)
T ss_dssp             EE
T ss_pred             Ee
Confidence            73

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.14  E-value=1.6e-12  Score=116.87  Aligned_cols=180  Identities=11%  Similarity=-0.052  Sum_probs=96.0

Q ss_pred             CeEEEEcCCCCccccCc-ccccCCCCCCEEECcCCcCcCC-CCccccCCCCCCEEEccC---------CcCcCCCCccc-
Q 042660           76 GSVNLSLSGNNFTGRIV-PALGSISSLQYLDLSNNKFIGP-IPGRITDLWGLNYLNLSM---------NGFKGGFPGNL-  143 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~~p~~~-  143 (261)
                      +...|++++|.+++... ..+..+++|++|++++| +... ++.....+++|++|+++.         +.+++.....+ 
T Consensus       290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~  368 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS  368 (594)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred             CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence            45588888888765432 23456777788877766 3211 111112355666666622         23332111111 


Q ss_pred             cCCCCCCEEEcccCccccccchhcc-CCCCCCEEecc--c----C----------------------------cccccCC
Q 042660          144 RNLQQLKVLDLRKNKLWGDIGGIMS-ELKNVEFVDLS--F----N----------------------------RFHGGLG  188 (261)
Q Consensus       144 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n----------------------------~l~~~~p  188 (261)
                      ..+++|+.|.+..|.+++.....+. .+++|+.|+++  +    +                            .+++..+
T Consensus       369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~  448 (594)
T 2p1m_B          369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVF  448 (594)
T ss_dssp             HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHH
Confidence            1244555555555554443333332 34455555554  2    2                            2222211


Q ss_pred             ccccccccCCCCCccEEEcccCccCccCc-cC-CCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          189 VGADNVSSIANTNLEVLDLGDNGITGELP-SF-GMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       189 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      ..+..    ..++|+.|++++|.+++... .+ ..+++|+.|++++|.+++.....+...+++|+.|++++|++
T Consensus       449 ~~l~~----~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          449 EYIGT----YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHH----HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHH----hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            11111    02467888888888765433 33 55778888888888886554444555567888888888875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.14  E-value=7.7e-10  Score=94.88  Aligned_cols=173  Identities=12%  Similarity=0.048  Sum_probs=80.7

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCc----------------------cccCCCCCCEEEccCCcCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPG----------------------RITDLWGLNYLNLSMNGFK  136 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l~  136 (261)
                      ++.+.. .+...-..+|.++.+|+.+++++|.+..+...                      +|.++++|+.+++..+ ++
T Consensus       161 ~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~  238 (401)
T 4fdw_A          161 EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VS  238 (401)
T ss_dssp             EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CC
T ss_pred             EEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-cc
Confidence            444443 44444445556666666666665555433333                      3444444444444432 22


Q ss_pred             CCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660          137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL  216 (261)
Q Consensus       137 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  216 (261)
                      .....+|.+ .+|+.+.+ .+.+.......|..+++|+.+++.+|.+.......+..-....+.+|+.+.+. +.++...
T Consensus       239 ~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~  315 (401)
T 4fdw_A          239 TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILG  315 (401)
T ss_dssp             EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEEC
T ss_pred             Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEh
Confidence            222223333 33444444 22333444555666667777766665543110011111111112344666665 2344333


Q ss_pred             c-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660          217 P-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG  259 (261)
Q Consensus       217 ~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (261)
                      . .|.++.+|+.+.+..+ ++ .++...|..+ +|+.+++++|.
T Consensus       316 ~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          316 QGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             TTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred             hhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence            3 5555666666666433 44 4555555555 56666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.07  E-value=2e-09  Score=92.26  Aligned_cols=172  Identities=10%  Similarity=0.018  Sum_probs=116.3

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      ++.+..+ ++..-..+|.+ ..|+.+.+.. .+..+.+.+|.++.+|+.++++.|.++......|. ..+|+.+.+..+ 
T Consensus       139 ~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-  213 (401)
T 4fdw_A          139 KVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-  213 (401)
T ss_dssp             EEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-
T ss_pred             EEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-
Confidence            6676655 66555667777 4799999986 77777888999999999999999999865555565 688999988744 


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccc-----------------cccCCCCCccEEEcccCccC-----ccC
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADN-----------------VSSIANTNLEVLDLGDNGIT-----GEL  216 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----------------~~~l~~~~L~~L~Ls~n~l~-----~~~  216 (261)
                      +.......|.++++|+.+++..+ ++......+..                 -....+.+|+.+.+.+|.+.     ...
T Consensus       214 l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~  292 (401)
T 4fdw_A          214 LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH  292 (401)
T ss_dssp             CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC
T ss_pred             hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC
Confidence            66667778888888888888764 22111122211                 11111345677777666554     233


Q ss_pred             c-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660          217 P-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN  258 (261)
Q Consensus       217 ~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N  258 (261)
                      + .|..+++|+.+.+.. .++ .++...|.++.+|+.+++..|
T Consensus       293 ~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          293 PYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT
T ss_pred             HHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc
Confidence            3 566777777777763 355 566677777777777777544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.06  E-value=1.5e-10  Score=97.79  Aligned_cols=165  Identities=15%  Similarity=0.078  Sum_probs=102.5

Q ss_pred             cccCCCCCCEEECcCCcCc---------CCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccc
Q 042660           94 ALGSISSLQYLDLSNNKFI---------GPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIG  164 (261)
Q Consensus        94 ~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  164 (261)
                      +...+++|+.|.+..+...         +.+...+..+++|+.|.+++|.-. .++. +. +++|+.|++..+.+.....
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHH
Confidence            3456778888888665331         123344567788999999877311 2333 33 7889999988887765544


Q ss_pred             hhcc--CCCCCCEEeccc--CcccccC-Ccccccc-ccCCCCCccEEEcccCccCccCc----cCCCCCCCCEEEcccCc
Q 042660          165 GIMS--ELKNVEFVDLSF--NRFHGGL-GVGADNV-SSIANTNLEVLDLGDNGITGELP----SFGMLPNLKVLRLGSNQ  234 (261)
Q Consensus       165 ~~~~--~l~~L~~L~l~~--n~l~~~~-p~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~~~L~~L~L~~n~  234 (261)
                      ..+.  .+++|+.|+|+.  |...+.. ...+... ....+++|+.|+|.+|.+.+..+    ....+++|+.|+|+.|.
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            4443  678899988853  2221110 0111111 11124678999998888865332    12356789999999888


Q ss_pred             CcccCcHHHHhC---CCCccEEEccCccCC
Q 042660          235 LFGMIPEELLES---VIPIQELDLSGNGFT  261 (261)
Q Consensus       235 l~~~~~~~~~~~---~~~L~~L~L~~N~ls  261 (261)
                      +++.....+...   +++|+.|++++|.++
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            876544444433   468899999888775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=1.2e-09  Score=92.32  Aligned_cols=162  Identities=17%  Similarity=0.191  Sum_probs=108.4

Q ss_pred             CcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCcccc--CCCCCCEEEccc--Cccccc----
Q 042660           91 IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR--NLQQLKVLDLRK--NKLWGD----  162 (261)
Q Consensus        91 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~--n~l~~~----  162 (261)
                      +...+..+++|+.|.+++|.-. .++. + .+++|++|++..+.++......+.  .+++|+.|+|+.  |...+.    
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            4455678899999999987311 2222 3 388999999999887654333443  689999999863  222111    


Q ss_pred             -cchhc--cCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC----c-cCCCCCCCCEEEcccCc
Q 042660          163 -IGGIM--SELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL----P-SFGMLPNLKVLRLGSNQ  234 (261)
Q Consensus       163 -~~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~----~-~~~~~~~L~~L~L~~n~  234 (261)
                       +...+  ..+++|++|++.+|.+++..+..+.....  .++|++|+|+.|.+.+..    + .+..+++|+.|+++.|.
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~--~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI--LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS--GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc--CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence             11222  25799999999999997544444433222  367899999999998632    2 23457899999999999


Q ss_pred             CcccCcHHHHhCCCCccEEEccCcc
Q 042660          235 LFGMIPEELLESVIPIQELDLSGNG  259 (261)
Q Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~  259 (261)
                      +++..-..+...+  ...++++.++
T Consensus       319 i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          319 LSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCHHHHHHHHHHc--CCEEEecCCc
Confidence            9855444443322  3557887664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=1.4e-09  Score=83.27  Aligned_cols=119  Identities=11%  Similarity=0.023  Sum_probs=66.7

Q ss_pred             ccccCCCCCCEEEccCC-cCcCC----CCccccCCCCCCEEEcccCccccc----cchhccCCCCCCEEecccCcccccC
Q 042660          117 GRITDLWGLNYLNLSMN-GFKGG----FPGNLRNLQQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFHGGL  187 (261)
Q Consensus       117 ~~~~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~  187 (261)
                      ..+...+.|++|++++| .+...    +...+...++|++|++++|.+...    +.+.+...++|++|++++|.+++..
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34566777888888887 77532    334455567777777777777543    2334445566777777777775432


Q ss_pred             CccccccccCCCCCccEEEc--ccCccCccC----c-cCCCCCCCCEEEcccCcCc
Q 042660          188 GVGADNVSSIANTNLEVLDL--GDNGITGEL----P-SFGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       188 p~~~~~~~~l~~~~L~~L~L--s~n~l~~~~----~-~~~~~~~L~~L~L~~n~l~  236 (261)
                      ...+...-. ..++|++|+|  ++|.+....    . .+...+.|++|++++|.+.
T Consensus       110 ~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            111111100 1234566666  566665421    1 2334456666666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.63  E-value=4e-09  Score=80.64  Aligned_cols=122  Identities=11%  Similarity=0.067  Sum_probs=70.7

Q ss_pred             CcccccCCCCCCEEECcCC-cCcCC----CCccccCCCCCCEEEccCCcCcCC----CCccccCCCCCCEEEcccCcccc
Q 042660           91 IVPALGSISSLQYLDLSNN-KFIGP----IPGRITDLWGLNYLNLSMNGFKGG----FPGNLRNLQQLKVLDLRKNKLWG  161 (261)
Q Consensus        91 ~~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~  161 (261)
                      +...+...+.|++|++++| .+...    +...+...++|++|++++|.++..    +...+...+.|++|++++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3344555667777777777 66532    233445566777777777776532    23334445667777777777754


Q ss_pred             c----cchhccCCCCCCEEec--ccCcccccCCccccccccCCCCCccEEEcccCccC
Q 042660          162 D----IGGIMSELKNVEFVDL--SFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGIT  213 (261)
Q Consensus       162 ~----~~~~~~~l~~L~~L~l--~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~  213 (261)
                      .    +...+...++|++|++  ++|.++......+...-. ..++|++|+|++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCC
Confidence            3    3455556667777777  667775432222222110 1245677777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.47  E-value=1.4e-07  Score=76.04  Aligned_cols=84  Identities=21%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             EECcCCcCc---CCCCccccCCCCCCEEEccCCcCcC--CCCccccCCCCCCEEEcccCccccc-cchhccCCCCCCEEe
Q 042660          104 LDLSNNKFI---GPIPGRITDLWGLNYLNLSMNGFKG--GFPGNLRNLQQLKVLDLRKNKLWGD-IGGIMSELKNVEFVD  177 (261)
Q Consensus       104 L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~  177 (261)
                      ++++.|...   +.++....++++|++|+|++|++++  .+|..+..+++|+.|+|++|.+.+. ....+..+ +|++|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            566777433   2222222467889999999999987  3456667889999999999999765 11223334 899999


Q ss_pred             cccCcccccCC
Q 042660          178 LSFNRFHGGLG  188 (261)
Q Consensus       178 l~~n~l~~~~p  188 (261)
                      +++|.+.+..|
T Consensus       227 L~~Npl~~~~~  237 (267)
T 3rw6_A          227 LDGNSLCDTFR  237 (267)
T ss_dssp             CTTSTTGGGCS
T ss_pred             ccCCcCccccC
Confidence            99999987655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=4.1e-08  Score=79.14  Aligned_cols=40  Identities=30%  Similarity=0.552  Sum_probs=22.2

Q ss_pred             CCCCCCEEEcccCcccc--ccchhccCCCCCCEEecccCccc
Q 042660          145 NLQQLKVLDLRKNKLWG--DIGGIMSELKNVEFVDLSFNRFH  184 (261)
Q Consensus       145 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~  184 (261)
                      ++++|+.|+|++|.+.+  .++..+..+++|+.|+|++|.++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            44556666666666655  23344455555555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.18  E-value=5.6e-07  Score=67.62  Aligned_cols=83  Identities=12%  Similarity=0.102  Sum_probs=41.7

Q ss_pred             CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCc-CcCCCCccccCC----CCCCEEEcccCc-cccccchhccCCCCC
Q 042660          100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG-FKGGFPGNLRNL----QQLKVLDLRKNK-LWGDIGGIMSELKNV  173 (261)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~L  173 (261)
                      .|+.||++++.++..--..+.++++|++|+|++|. ++...-..+..+    ++|++|++++|. ++...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            35555555555544333334555555555555553 443222223332    246666666653 554444445556666


Q ss_pred             CEEecccCc
Q 042660          174 EFVDLSFNR  182 (261)
Q Consensus       174 ~~L~l~~n~  182 (261)
                      +.|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.07  E-value=5.2e-05  Score=64.51  Aligned_cols=51  Identities=8%  Similarity=0.068  Sum_probs=28.4

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEE
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYL  128 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  128 (261)
                      +..++.+.. .++..-..+|.++.+|+.+++..+ +..+...+|.++..|+.+
T Consensus        72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i  122 (394)
T 4fs7_A           72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSI  122 (394)
T ss_dssp             TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCC
T ss_pred             CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhh
Confidence            455666653 355455567777788888877644 333333344444444433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=3.8e-06  Score=63.05  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=21.3

Q ss_pred             CccEEEcccCc-cCccCc-cCCCCCCCCEEEcccCc-Cc
Q 042660          201 NLEVLDLGDNG-ITGELP-SFGMLPNLKVLRLGSNQ-LF  236 (261)
Q Consensus       201 ~L~~L~Ls~n~-l~~~~~-~~~~~~~L~~L~L~~n~-l~  236 (261)
                      +|++|+|++|. +++.-- .+..+++|+.|+++++. ++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            35666666653 553211 44556777777777764 44

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.88  E-value=4.9e-06  Score=63.67  Aligned_cols=116  Identities=7%  Similarity=0.026  Sum_probs=62.2

Q ss_pred             ccCCCCCCEEEccCC-cCcC----CCCccccCCCCCCEEEcccCcccccc----chhccCCCCCCEEecccCcccccCCc
Q 042660          119 ITDLWGLNYLNLSMN-GFKG----GFPGNLRNLQQLKVLDLRKNKLWGDI----GGIMSELKNVEFVDLSFNRFHGGLGV  189 (261)
Q Consensus       119 ~~~l~~L~~L~l~~n-~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~p~  189 (261)
                      +..-+.|++|+|++| .+..    .+.+.+..-+.|+.|+|++|.+....    .+.+..-..|++|+|++|.|+...-.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            455667888888775 6653    13344555667777777777775442    33344556777777777777543222


Q ss_pred             cccccccCCCCCccEEEcccC---ccCcc----Cc-cCCCCCCCCEEEcccCcC
Q 042660          190 GADNVSSIANTNLEVLDLGDN---GITGE----LP-SFGMLPNLKVLRLGSNQL  235 (261)
Q Consensus       190 ~~~~~~~l~~~~L~~L~Ls~n---~l~~~----~~-~~~~~~~L~~L~L~~n~l  235 (261)
                      .+...-. .+..|++|+|++|   .+...    +. .+..-+.|+.|+++.|.+
T Consensus       117 ala~aL~-~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHh-hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            2222111 1234666666543   22221    11 233445566666655544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.74  E-value=0.00028  Score=59.55  Aligned_cols=142  Identities=13%  Similarity=0.037  Sum_probs=83.0

Q ss_pred             ccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCC
Q 042660           95 LGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE  174 (261)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  174 (261)
                      +.....++.+.+..+ +..+....|.+...|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|..+.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            444555666666543 33344455666777777777655 44444566667777777777543 4444555677777777


Q ss_pred             EEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCC
Q 042660          175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESV  247 (261)
Q Consensus       175 ~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  247 (261)
                      .+.+.++.+.......+..+     .+|+.+.+..+ ++.... +|.++.+|+.+.+..+ ++ .+....|.+.
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c-----~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c  355 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDC-----VKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGAFEGS  355 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTC-----TTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTS
T ss_pred             cccccccccceehhhhhcCC-----CCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhHhhCC
Confidence            77777666653333344443     34577777543 444444 6777777777777543 44 4444555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.68  E-value=0.00044  Score=58.72  Aligned_cols=127  Identities=14%  Similarity=0.028  Sum_probs=66.7

Q ss_pred             ccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCC
Q 042660          119 ITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA  198 (261)
Q Consensus       119 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~  198 (261)
                      |.+...++.+.+..+... .....|..+..++.+....+.+   ....|..+.+|+.+.+..+ +.......+..+    
T Consensus       249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c----  319 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESC----  319 (394)
T ss_dssp             TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC----
T ss_pred             ccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCC----
Confidence            344444555544443222 2233344444444444433221   2234555666666666543 321222223332    


Q ss_pred             CCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660          199 NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN  258 (261)
Q Consensus       199 ~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N  258 (261)
                       .+|+.+++..+ ++.... .|.++.+|+.+.+..+ ++ .++...|.++.+|+.+++..+
T Consensus       320 -~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          320 -TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             -TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             -CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence             35577777543 554444 6777777888777665 55 566677777777777777643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.67  E-value=0.00057  Score=57.61  Aligned_cols=131  Identities=11%  Similarity=0.071  Sum_probs=90.6

Q ss_pred             cccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccC
Q 042660          118 RITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI  197 (261)
Q Consensus       118 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l  197 (261)
                      .+.....++.+.+..+ +.......+.++..|+.+.+..+ +.......|..+.+|+.+.+..+ +.......+..+   
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c---  285 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC---  285 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC---
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc---
Confidence            3445566777766544 33344566777888888888655 55556677888888888888644 322222233333   


Q ss_pred             CCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660          198 ANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN  258 (261)
Q Consensus       198 ~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N  258 (261)
                        .+|+.+.+.++.++.... .|.++.+|+.+.+..+ ++ .+....|.++.+|+.+.+..+
T Consensus       286 --~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          286 --SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             --TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred             --cccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence              567999999888886666 8899999999999754 65 677788888888888877543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.63  E-value=0.00028  Score=59.97  Aligned_cols=147  Identities=10%  Similarity=0.053  Sum_probs=88.1

Q ss_pred             CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660          100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS  179 (261)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  179 (261)
                      .+..+.+. +.+..+...+|.++..|+.+.+..+... ....+|.++..|+.+.+. +.+.......|.++.+|+.+++.
T Consensus       243 ~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp  319 (394)
T 4gt6_A          243 EDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP  319 (394)
T ss_dssp             CCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence            34444443 2344455567788888888888765443 456677888888888885 44556666778888888888886


Q ss_pred             cCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660          180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN  258 (261)
Q Consensus       180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N  258 (261)
                      .+ ++......+..+     .+|+.+.+..+ ++.... .|.++.+|+.+++.++...    ...+....+|+.+.+..|
T Consensus       320 ~~-v~~I~~~aF~~C-----~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          320 EG-ITQILDDAFAGC-----EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TT-CCEECTTTTTTC-----TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC--------
T ss_pred             Cc-ccEehHhHhhCC-----CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCCC
Confidence            54 332222333333     45688888654 554555 7888899999988877543    122344557888877765


Q ss_pred             cC
Q 042660          259 GF  260 (261)
Q Consensus       259 ~l  260 (261)
                      .+
T Consensus       389 ~~  390 (394)
T 4gt6_A          389 SI  390 (394)
T ss_dssp             --
T ss_pred             CE
Confidence            43

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.56  E-value=2.1e-05  Score=60.19  Aligned_cols=118  Identities=8%  Similarity=0.044  Sum_probs=64.5

Q ss_pred             cccCCCCCCEEECcCC-cCcC----CCCccccCCCCCCEEEccCCcCcCC----CCccccCCCCCCEEEcccCccccc--
Q 042660           94 ALGSISSLQYLDLSNN-KFIG----PIPGRITDLWGLNYLNLSMNGFKGG----FPGNLRNLQQLKVLDLRKNKLWGD--  162 (261)
Q Consensus        94 ~~~~l~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~--  162 (261)
                      .+.+-+.|++|++++| .|..    .+.+.+..-..|++|+|++|.+...    +.+.+..-+.|+.|+|++|.|...  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3444566777777764 5542    2334455566777777777777642    223333456777777777777544  


Q ss_pred             --cchhccCCCCCCEEecccC---cccccCCccccccccCCCCCccEEEcccCcc
Q 042660          163 --IGGIMSELKNVEFVDLSFN---RFHGGLGVGADNVSSIANTNLEVLDLGDNGI  212 (261)
Q Consensus       163 --~~~~~~~l~~L~~L~l~~n---~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l  212 (261)
                        +.+.+..-..|++|+|++|   .+.......+...-. .++.|+.|+++.|.+
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~-~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCCH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH-hCCCcCeEeccCCCc
Confidence              3344555566777777654   222111111111110 134567777766654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.55  E-value=0.00046  Score=58.61  Aligned_cols=156  Identities=12%  Similarity=0.105  Sum_probs=99.9

Q ss_pred             ccccCCCCCCEEECcCCcCcCCCCcc-------------ccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660           93 PALGSISSLQYLDLSNNKFIGPIPGR-------------ITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL  159 (261)
Q Consensus        93 ~~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  159 (261)
                      .++..+..++......+.........             +.....+..+.+..+ ++.....+|.++..|+.+.+..+..
T Consensus       199 ~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~  277 (394)
T 4gt6_A          199 NAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV  277 (394)
T ss_dssp             TTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC
T ss_pred             chhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc
Confidence            34555666766665554433211111             122334445554432 3334456788889999998865543


Q ss_pred             ccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCccc
Q 042660          160 WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGM  238 (261)
Q Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~  238 (261)
                       ......|.++..|+.+.+.. .+.......+..+     .+|+.+.+..+ ++.... .|.++.+|+.+.+..+ ++ .
T Consensus       278 -~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c-----~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~  347 (394)
T 4gt6_A          278 -SIGTGAFMNCPALQDIEFSS-RITELPESVFAGC-----ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-K  347 (394)
T ss_dssp             -EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTC-----TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-B
T ss_pred             -eecCcccccccccccccCCC-cccccCceeecCC-----CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-E
Confidence             45567788899999998863 3432222333333     46799998764 554555 7888999999999654 66 7


Q ss_pred             CcHHHHhCCCCccEEEccCcc
Q 042660          239 IPEELLESVIPIQELDLSGNG  259 (261)
Q Consensus       239 ~~~~~~~~~~~L~~L~L~~N~  259 (261)
                      +....|.++.+|+.+++.++.
T Consensus       348 I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          348 IPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CCGGGGTTCTTCCEEEESSCH
T ss_pred             EhHhHhhCCCCCCEEEECCce
Confidence            888889988899999998763

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.50  E-value=0.00019  Score=51.17  Aligned_cols=55  Identities=25%  Similarity=0.311  Sum_probs=33.1

Q ss_pred             EEecccCccc-ccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCc
Q 042660          175 FVDLSFNRFH-GGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLF  236 (261)
Q Consensus       175 ~L~l~~n~l~-~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~  236 (261)
                      .++.+++.++ ..+|..+       +.+|+.|+|++|+|+...+ .|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l-------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF-------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC-------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC-------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666664 2333321       1345777777777776555 5666677777777777664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.0012  Score=46.98  Aligned_cols=55  Identities=22%  Similarity=0.260  Sum_probs=27.4

Q ss_pred             EEECcCCcCc-CCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660          103 YLDLSNNKFI-GPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL  159 (261)
Q Consensus       103 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  159 (261)
                      .++-+++.++ ..+|..+.  .++++|+|++|.|+...+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554 23332221  2355556666555544444455555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.8 bits (195), Expect = 4e-18
 Identities = 57/307 (18%), Positives = 93/307 (30%), Gaps = 82/307 (26%)

Query: 25  SESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGS---VNLS 81
           +  +  +L++ KK + +       S+W  T+      C  +W GV CD ++ +    NL 
Sbjct: 4   NPQDKQALLQIKKDLGNPT---TLSSWLPTTDC----CNRTWLGVLCDTDTQTYRVNNLD 56

Query: 82  LSGNNFTGR--IVPALGSISSLQYLDLSNNKF----IGPIPGRITDLWG----------- 124
           LSG N      I  +L ++  L +L +         I P   ++T L             
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 125 ----------LNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174
                     L  L+ S N   G  P ++ +L  L  +    N++ G I         + 
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 175 FVDLSFN------------------------------------------RFHGGLGVGAD 192
                                                                   +  D
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236

Query: 193 NVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQ 251
                 + NL  LDL +N I G LP     L  L  L +  N L G IP+    ++    
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFD 294

Query: 252 ELDLSGN 258
               + N
Sbjct: 295 VSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 7e-10
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 1/93 (1%)

Query: 48  HSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLS 107
             +   T         +++             L L  N   G +   L  +  L  L++S
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 108 NNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP 140
            N   G IP +  +L   +    + N    G P
Sbjct: 277 FNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 33/160 (20%), Positives = 54/160 (33%), Gaps = 8/160 (5%)

Query: 82  LSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG 141
             GN  +G I  + GS S L      +   +            L +++LS N  +G    
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-T 200
              + +                 G +   KN+  +DL  NR +G L         +    
Sbjct: 216 LFGSDKN-TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL------PQGLTQLK 268

Query: 201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIP 240
            L  L++  N + GE+P  G L    V    +N+     P
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 5e-18
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 19/179 (10%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           LSL+GN      +  L S+++L  LDL+NN+     P  ++ L  L  L L  N      
Sbjct: 224 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 279

Query: 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199
           P  L  L  L  L+L +N+L       +S LKN+ ++ L FN       V +        
Sbjct: 280 P--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISPVSS-------L 328

Query: 200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
           T L+ L   +N ++  + S   L N+  L  G NQ+  + P   L     I +L L+  
Sbjct: 329 TKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTPLANLTR---ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIP 240
             +  L     GI   +     L NL  +   +NQL  + P
Sbjct: 44  DQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDITP 83

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 7e-14
 Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 18/194 (9%)

Query: 60  KSCPVSWTGVSCD-------PESGSVN---LSLSGNNFTGRIVPALGSISSLQYLDLSNN 109
             C      V C        P+    +   L L  N  T        ++ +L  L L NN
Sbjct: 6   FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 110 KFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSE 169
           K     PG    L  L  L LS N  K       + LQ+L+V +    K+   +   +++
Sbjct: 66  KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

Query: 170 LKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLR 229
           +  VE               G +N +      L  + + D  IT  +P  G+ P+L  L 
Sbjct: 126 MIVVELGTNPLKSS------GIENGAFQGMKKLSYIRIADTNIT-TIPQ-GLPPSLTELH 177

Query: 230 LGSNQLFGMIPEEL 243
           L  N++  +    L
Sbjct: 178 LDGNKITKVDAASL 191

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 5e-09
 Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 5/188 (2%)

Query: 47  IHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDL 106
           + +  N   + +  + P+  +G+      G   LS      T       G   SL  L L
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 178

Query: 107 SNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGI 166
             NK        +  L  L  L LS N       G+L N   L+ L L  NKL    GG 
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG- 237

Query: 167 MSELKNVEFVDLSFNRFHG-GLGVGADNVSSIANTNLEVLDLGDNGIT-GELP--SFGML 222
           +++ K ++ V L  N     G         +    +   + L  N +   E+   +F  +
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 297

Query: 223 PNLKVLRL 230
                ++L
Sbjct: 298 YVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 8e-09
 Identities = 33/202 (16%), Positives = 66/202 (32%), Gaps = 17/202 (8%)

Query: 62  CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITD 121
             V  +  +   +   V L  +    +G    A   +  L Y+ +++   I  IP  +  
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL-- 169

Query: 122 LWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN 181
              L  L+L  N        +L+ L  L  L L  N +     G ++   ++  + L+ N
Sbjct: 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229

Query: 182 RFHGGLGVGADNVSSIANTNLEVLDLGDNGITG-------ELPSFGMLPNLKVLRLGSNQ 234
           +                +  ++V+ L +N I+                 +   + L SN 
Sbjct: 230 KLVK------VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

Query: 235 L-FGMIPEELLESVIPIQELDL 255
           + +  I       V     + L
Sbjct: 284 VQYWEIQPSTFRCVYVRAAVQL 305

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 3e-13
 Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 6/180 (3%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            L L               +++LQYL L +N           DL  L +L L  N     
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
                R L  L  L L +N++         +L  +  + L  N                 
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP----- 223

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELL-ESVIPIQELDLSG 257
              L+ L L DN    +  +  +   L+  R  S+++   +P+ L    +  +   DL G
Sbjct: 224 LRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 9e-06
 Identities = 39/208 (18%), Positives = 58/208 (27%), Gaps = 38/208 (18%)

Query: 62  CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITD 121
           CP       C  E   V  S          VP  G  ++ Q + L  N+           
Sbjct: 2   CP---GACVCYNE-PKVTTSCPQQGLQA--VPV-GIPAASQRIFLHGNRISHVPAASFRA 54

Query: 122 LWGLNYLNLSMNGFKGGF-------------------------PGNLRNLQQLKVLDLRK 156
              L  L L  N                               P     L +L  L L +
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216
             L     G+   L  ++++ L  N           + +     NL  L L  N I+   
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALP-----DDTFRDLGNLTHLFLHGNRISSVP 169

Query: 217 P-SFGMLPNLKVLRLGSNQLFGMIPEEL 243
             +F  L +L  L L  N++  + P   
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 4e-08
 Identities = 40/208 (19%), Positives = 60/208 (28%), Gaps = 22/208 (10%)

Query: 70  SCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLN 129
                +  + ++    N T  + P L        L LS N         +     L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 130 LS-MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG 188
           L      K    G L  L  L +   +   L      + +        +   +   G L 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 189 VGADNVSSIANTN---------------LEVLDLGDNGITGELP-SFGMLPNLKVLRLGS 232
              +        N               LE L L +N +T         L NL  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 233 NQLFGMIPEELLESVIPIQELDLSGNGF 260
           N L+  IP+    S + +    L GN +
Sbjct: 182 NSLY-TIPKGFFGSHL-LPFAFLHGNPW 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L+  + T  ++  L  +  + +LDLS+N+     P  +  L  L  L  S N  +   
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALE--N 57

Query: 140 PGNLRNLQQLKVLDLRKNKL-WGDIGGIMSELKNVEFVDLSFNRFHG 185
              + NL +L+ L L  N+L        +     +  ++L  N    
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 3e-06
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 15/132 (11%)

Query: 102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWG 161
           + L L++      +   +  L  + +L+LS N  +   P  L  L+ L+VL    N L  
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 162 DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLEVLDLGDNGITGELPS-- 218
             G        ++ + L  NR           +  + +   L +L+L  N +  E     
Sbjct: 58  VDGVANL--PRLQELLLCNNRLQQS-----AAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 219 --FGMLPNLKVL 228
               MLP++  +
Sbjct: 111 RLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 150 KVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGD 209
           +VL L    L   +  +  +L  V  +DLS NR             ++A      +    
Sbjct: 1   RVLHLAHKDL-TVLCHL-EQLLLVTHLDLSHNRLRA-------LPPALAALRCLEVLQAS 51

Query: 210 NGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
           +     +     LP L+ L L +N+L      + L S   +  L+L GN   
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 2e-06
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 199 NTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEEL---LESVIPIQEL 253
           + +++ LD+    ++    +    +L   +V+RL    L     +++   L     + EL
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 254 DLSGNGFT 261
           +L  N   
Sbjct: 61  NLRSNELG 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 17/100 (17%)

Query: 172 NVEFVDLSFNRFHGGLGVGADNVSSIAN--TNLEVLDLGDNGITGE-----LPSFGMLPN 224
           +++ +D+                + +       +V+ L D G+T         +  + P 
Sbjct: 3   DIQSLDIQCEEL------SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA 56

Query: 225 LKVLRLGSNQLFGMIPEELLESV----IPIQELDLSGNGF 260
           L  L L SN+L  +    +L+ +      IQ+L L     
Sbjct: 57  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 3e-05
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 65  SWTGVSCDPESGSVNLSLSGNNFTGR----IVPALGSISSLQYLDLSNNKFIGPIPGRIT 120
                   P S    L L+  + +      +   L +  SL+ LDLSNN        ++ 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 121 D-----LWGLNYLNLSMNGFKGGFPGNLRNLQQLK 150
           +        L  L L    +       L+ L++ K
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 3e-05
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 199 NTNLEVLDLGDNGITGE-----LPSFGMLPNLKVLRLGSNQLFGMIPEELLESVI----P 249
            + L VL L D  ++         +     +L+ L L +N L      +L+ESV      
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 250 IQELDLSGNGFT 261
           +++L L    ++
Sbjct: 428 LEQLVLYDIYWS 439

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 12/96 (12%)

Query: 100 SLQYLDLSNNKFI-GPIPGRITDLWGLNYLNLSMNGFKG----GFPGNLRNLQQLKVLDL 154
            +Q LD+   +         +  L     + L   G            LR    L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 155 RKNKLWGDIG------GIMSELKNVEFVDLSFNRFH 184
           R N+L GD+G      G+ +    ++ + L      
Sbjct: 63  RSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 4/56 (7%)

Query: 79  NLSLSGNNFTGR----IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNL 130
            + L     T      I  AL    +L  L+L +N+        +          +
Sbjct: 31  VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 7/87 (8%)

Query: 165 GIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPS------ 218
           G+      +  + L+           +   + +AN +L  LDL +N +            
Sbjct: 363 GLGQPGSVLRVLWLADCDV-SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 219 FGMLPNLKVLRLGSNQLFGMIPEELLE 245
                 L+ L L        + + L  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 5e-06
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG 259
            +LE L++ +N +  ELP+    P L+ L    N L   +PE        +++L +  N 
Sbjct: 284 PSLEELNVSNNKLI-ELPAL--PPRLERLIASFNHL-AEVPELPQN----LKQLHVEYNP 335

Query: 260 FT 261
             
Sbjct: 336 LR 337

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L++S N      +PA      L+ L  S N  +  +P        L  L++  N  +  F
Sbjct: 289 LNVSNNKLIE--LPA--LPPRLERLIASFNH-LAEVPELPQ---NLKQLHVEYNPLR-EF 339

Query: 140 PGNLRNLQQLKV 151
           P    +++ L++
Sbjct: 340 PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 20/112 (17%)

Query: 123 WGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR 182
             L      +N               L+ L++  NKL      + +    +E +  SFN 
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL----IELPALPPRLERLIASFNH 315

Query: 183 FHGGLGVGADNVSSIAN--TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGS 232
                       + +     NL+ L +  N +  E P      +++ LR+ S
Sbjct: 316 L-----------AEVPELPQNLKQLHVEYNPLR-EFPDI--PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 82  LSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG 141
              N  +  I        SL+ L++SNNK I  +P        L  L  S N      P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHLA-EVPE 321

Query: 142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKN 172
             +N   LK L +  N L  +   I   +++
Sbjct: 322 LPQN---LKQLHVEYNPL-REFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 199 NTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEEL 243
           +     L+L + G++  LP     P+L+ L    N L   +PE  
Sbjct: 37  DRQAHELELNNLGLS-SLPEL--PPHLESLVASCNSL-TELPELP 77

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 8e-06
 Identities = 26/165 (15%), Positives = 50/165 (30%), Gaps = 13/165 (7%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIG-------PIPGRITDLWGLNYLNLS 131
            +  + ++     V  +  + ++  L L+ NK             G +           S
Sbjct: 50  QIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS 107

Query: 132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIM-SELKNVEFVDLSFNRFHGGLGVG 190
           +   K     +L +     +  L        +               L+           
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 167

Query: 191 ADNVSSIAN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ 234
             ++  +A  T L+ L L  N I+ +L +   L NL VL L  +Q
Sbjct: 168 ISDIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLEL-FSQ 210

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 15/187 (8%)

Query: 79  NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138
            LS  G   T   +  +  +++L  L+L +N+     P +         L+ +       
Sbjct: 45  TLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102

Query: 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
             G               +         +  L        + +   G   +   ++ +  
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ 162

Query: 199 NT---------NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIP 249
            +          L  L   DN I+  +     LPNL  + L +NQ+  + P     +   
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVSPLANTSN--- 218

Query: 250 IQELDLS 256
           +  + L+
Sbjct: 219 LFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ 234
            NL  + L +N I+  +       NL ++ L +NQ
Sbjct: 195 PNLIEVHLKNNQISD-VSPLANTSNLFIVTL-TNQ 227

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 9e-05
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWG 161
           Q LDL+       + GR+    G+       +        +     +++ +DL  + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60

Query: 162 D-IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-NTNLEVLD 206
             + GI+S+   ++ + L   R    +      V+++A N+NL  L+
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPI------VNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 2/92 (2%)

Query: 74  ESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKF-IGPIPGRITDLWGLNYLNLSM 132
             G +      +      +    S   +Q++DLSN+   +  + G ++    L  L+L  
Sbjct: 22  SQGVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 133 NGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIG 164
                     L     L  L+L     + +  
Sbjct: 81  LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 3/130 (2%)

Query: 99  SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158
              + LDL   K I  I      L   + ++ S N  +         L++LK L +  N+
Sbjct: 18  VRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNNR 74

Query: 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPS 218
           +     G+   L ++  + L+ N       +              + +   N     L  
Sbjct: 75  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 134

Query: 219 FGMLPNLKVL 228
              +P ++VL
Sbjct: 135 IYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 80  LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF 139
           L L G      I     ++     +D S+N+ I  + G    L  L  L ++ N      
Sbjct: 23  LDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKLDGF-PLLRRLKTLLVNNNRICRIG 79

Query: 140 PGNLRNLQQLKVLDLRKNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198
            G  + L  L  L L  N L        ++ LK++ ++ +  N            +  + 
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV- 138

Query: 199 NTNLEVLD 206
              + VLD
Sbjct: 139 -PQVRVLD 145

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 33/203 (16%), Positives = 60/203 (29%), Gaps = 24/203 (11%)

Query: 60  KSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRI 119
             C    T V C           +G       +P          L L++N+        +
Sbjct: 4   AMCHCEGTTVDC-----------TGRGLKE--IPR-DIPLHTTELLLNDNELGRISSDGL 49

Query: 120 TDLW-GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDL 178
                 L  L L  N   G  P        ++ L L +NK+      +   L  ++ ++L
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109

Query: 179 SFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM 238
             N+    +    ++       +L  L+L  N              L+   L        
Sbjct: 110 YDNQISCVMPGSFEH-----LNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG 164

Query: 239 IPEELLESVIPIQELDLSGNGFT 261
            P ++ +    +Q  DL  + F 
Sbjct: 165 APSKVRD----VQIKDLPHSEFK 183

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 27/184 (14%), Positives = 44/184 (23%), Gaps = 38/184 (20%)

Query: 78  VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG 137
           +   L   N T     +   +  +  L       I  I G +  L  L  +N S N    
Sbjct: 21  MKTVLGKTNVTD--TVSQTDLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQLTD 76

Query: 138 GF--------------------------------PGNLRNLQQLKVLDLRKNKLWGDIGG 165
                                                  N             L      
Sbjct: 77  ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 136

Query: 166 IMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLEVLDLGDNGITGELPSFGMLPN 224
             +         L+  +          ++  +AN T LE LD+  N ++  +     L N
Sbjct: 137 SNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTN 195

Query: 225 LKVL 228
           L+ L
Sbjct: 196 LESL 199

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 62  CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRIT 120
           CP +     C P  GS  L  + +      +  L    +L  L + N + +  +    + 
Sbjct: 1   CPDA-----CCP-HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLR 53

Query: 121 DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180
            L  L  L +  +G +   P       +L  L+L  N L   +     +  +++ + LS 
Sbjct: 54  GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSG 112

Query: 181 NRFH 184
           N  H
Sbjct: 113 NPLH 116

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 10/58 (17%), Positives = 16/58 (27%)

Query: 101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158
            +     NN              G   L++S           L NL++L+       K
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 10/57 (17%)

Query: 94  ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLK 150
                S    LD+S  +        + +L  L   +            NL+ L  L+
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY----------NLKKLPTLE 242

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.67
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.26
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.23
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.17
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.15
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.85
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.96
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.22

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.9e-35  Score=244.85  Aligned_cols=230  Identities=28%  Similarity=0.491  Sum_probs=193.1

Q ss_pred             CChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcCCCC---CeEEEEcCCCCccc--cCcccccCC
Q 042660           24 GSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPES---GSVNLSLSGNNFTG--RIVPALGSI   98 (261)
Q Consensus        24 ~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~~~~---~~~~L~l~~n~l~~--~~~~~~~~l   98 (261)
                      +.++|++||++||+++ .+|.  .+++|...   .+| |.+.|.||+|+..+   .+++|+|+++++.|  .+|+++.++
T Consensus         3 c~~~e~~aLl~~k~~~-~~~~--~l~sW~~~---~d~-C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L   75 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDL-GNPT--TLSSWLPT---TDC-CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL   75 (313)
T ss_dssp             SCHHHHHHHHHHHHHT-TCCG--GGTTCCTT---SCT-TTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred             CCHHHHHHHHHHHHHC-CCCC--cCCCCCCC---CCC-CCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcC
Confidence            5689999999999999 4554  37889754   466 77789999998644   46799999999998  478999999


Q ss_pred             CCCCEEECcC-CcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEe
Q 042660           99 SSLQYLDLSN-NKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVD  177 (261)
Q Consensus        99 ~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  177 (261)
                      ++|++|++++ |++.|.+|..+.++++|++|++++|++.+..+..+..+.+|+.+++++|.+.+.+|..+..++.+++++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            9999999986 899999999999999999999999999988888888899999999999999888888899999999999


Q ss_pred             cccCcccccCCccccccccCC-------------------------------------------CCCccEEEcccCccCc
Q 042660          178 LSFNRFHGGLGVGADNVSSIA-------------------------------------------NTNLEVLDLGDNGITG  214 (261)
Q Consensus       178 l~~n~l~~~~p~~~~~~~~l~-------------------------------------------~~~L~~L~Ls~n~l~~  214 (261)
                      +++|.+.+.+|..+..+..+.                                           ..+++.+++++|.+.+
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999988888887666554431                                           2467888888888877


Q ss_pred             cCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          215 ELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       215 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      .++.+..+++|+.|++++|+++|.+|..+ ..+++|++|+|++|+|+
T Consensus       236 ~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l-~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             BGGGCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccCccCeecccCChHH-hCCCCCCEEECcCCccc
Confidence            77777778888888888888888888765 45678888888888763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.9e-23  Score=167.26  Aligned_cols=176  Identities=25%  Similarity=0.200  Sum_probs=154.0

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      +...|+|++|.|++..+..|.++++|++|++++|.|+.. + .+..+++|++|++++|+++. .+..+..+++|+.|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccccccccccc-ccccccccccccccccc
Confidence            456899999999987778899999999999999999854 3 35789999999999999985 67788999999999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCc
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQ  234 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~  234 (261)
                      +|.+....+..+..+.+++.+++++|.+++..+..+..+.     +++.+++++|++++.++ .+..+++|++|+|++|.
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~-----~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccc-----cchhcccccccccccCccccccccccceeecccCC
Confidence            9999888888899999999999999999866555555554     56999999999998877 78899999999999999


Q ss_pred             CcccCcHHHHhCCCCccEEEccCccCC
Q 042660          235 LFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      |+ .+|++++. +.+|+.|+|++|++.
T Consensus       184 L~-~lp~~~~~-~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         184 LY-TIPKGFFG-SHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CC-CCCTTTTT-TCCCSEEECCSCCBC
T ss_pred             Cc-ccChhHCC-CCCCCEEEecCCCCC
Confidence            99 89988764 678999999999863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-22  Score=164.26  Aligned_cols=179  Identities=26%  Similarity=0.272  Sum_probs=151.6

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCC-------------------------CCccccCCCCCCEEEc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGP-------------------------IPGRITDLWGLNYLNL  130 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~~~l~~L~~L~l  130 (261)
                      ...+|+|++|+|+...+..|.++++|++|++++|.+..+                         .+..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            345899999999977778899999999999999887432                         2345677788999999


Q ss_pred             cCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccC
Q 042660          131 SMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDN  210 (261)
Q Consensus       131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n  210 (261)
                      ++|.+....+..+....+|+.+++++|.+++..+..|..+++|++|++++|.+++..+..+..+.     +|+.+++++|
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~-----~L~~l~l~~N  187 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-----SLDRLLLHQN  187 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCEEECCSS
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccc-----ccchhhhhhc
Confidence            99888776677778888899999999999888788888899999999999999876666666664     5699999999


Q ss_pred             ccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          211 GITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       211 ~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      ++++..| .|..+++|++|++++|.++ .++...+..+.+|+.|++++|++
T Consensus       188 ~l~~i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         188 RVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccChhHhhhhhhcccccccccccc-cccccccccccccCEEEecCCCC
Confidence            9998888 8999999999999999998 67777788888999999999986

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=5.6e-23  Score=169.30  Aligned_cols=181  Identities=27%  Similarity=0.415  Sum_probs=148.9

Q ss_pred             eEEEEcCC-CCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           77 SVNLSLSG-NNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        77 ~~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ..+|++++ |++.|.+|+.+.++++|++|++++|++.+..+..+..+..|++++++.|.+.+.+|..+..++.++.++++
T Consensus        78 L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~  157 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecc
Confidence            34899986 89999999999999999999999999999888888899999999999999888889999999999999999


Q ss_pred             cCccccccchhccCCCCC-CEEecccCccccc-----------------------CCccccccccCC-------------
Q 042660          156 KNKLWGDIGGIMSELKNV-EFVDLSFNRFHGG-----------------------LGVGADNVSSIA-------------  198 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~-----------------------~p~~~~~~~~l~-------------  198 (261)
                      +|.+.+.+|..+..+..+ +.+++++|++++.                       .|..+.....+.             
T Consensus       158 ~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~  237 (313)
T d1ogqa_         158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            998888888777666554 5666666655432                       223222322222             


Q ss_pred             -----CCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660          199 -----NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG  259 (261)
Q Consensus       199 -----~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (261)
                           .++|+.|+|++|+++|.+| .++.+++|++|+|++|+|+|.+|..  ..+.+|+.+++++|+
T Consensus       238 ~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~--~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc--ccCCCCCHHHhCCCc
Confidence                 3678999999999998888 8999999999999999999999852  356688999999997

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-21  Score=155.87  Aligned_cols=175  Identities=24%  Similarity=0.252  Sum_probs=147.8

Q ss_pred             CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL  154 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  154 (261)
                      .+.++++.++++++ .+|+.+.  +++++|++++|.|++..+..|.++++|++|++++|.++. +| .++.+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            45566788888888 4676553  579999999999998878889999999999999999985 44 3578999999999


Q ss_pred             ccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccC
Q 042660          155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSN  233 (261)
Q Consensus       155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n  233 (261)
                      ++|++... +..+..+++|+.|++++|.+.+..+..+..+     .+++.|++++|.++..++ .+..++.++.+++++|
T Consensus        85 s~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_          85 SHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL-----GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             CSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cccccccc-ccccccccccccccccccccceeeccccccc-----cccccccccccccceeccccccccccchhcccccc
Confidence            99999654 6678899999999999999986555555444     456999999999998777 7788999999999999


Q ss_pred             cCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          234 QLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +++ .++.+.+..+++|++|+|++|+|+
T Consensus       159 ~l~-~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         159 NLT-ELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CCS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccc-ccCccccccccccceeecccCCCc
Confidence            999 677777788899999999999885

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=7.4e-21  Score=155.81  Aligned_cols=193  Identities=22%  Similarity=0.255  Sum_probs=133.4

Q ss_pred             CCCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEc
Q 042660           61 SCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNL  130 (261)
Q Consensus        61 ~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  130 (261)
                      .|.|.|.+|.|...          .+...|++++|+|+...+..|.++++|++|++++|.+....|..|..+++|++|++
T Consensus         7 ~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_           7 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            37789999999742          34558999999999766678999999999999999999888999999999999999


Q ss_pred             cCCcCcCCCC------------------------------------------------ccccCCCCCCEEEcccCcc---
Q 042660          131 SMNGFKGGFP------------------------------------------------GNLRNLQQLKVLDLRKNKL---  159 (261)
Q Consensus       131 ~~n~l~~~~p------------------------------------------------~~~~~l~~L~~L~l~~n~l---  159 (261)
                      ++|+++. +|                                                ..+..+++|+.+++++|.+   
T Consensus        87 ~~n~l~~-l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          87 SKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             CSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             cCCccCc-CccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            9987763 22                                                1122233444444444443   


Q ss_pred             ------------------ccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCC
Q 042660          160 ------------------WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGM  221 (261)
Q Consensus       160 ------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~  221 (261)
                                        .+..+..+..++.++.|++++|.+.+..+..+..+     ++|++|+|++|+++..++.+..
T Consensus       166 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l-----~~L~~L~L~~N~L~~lp~~l~~  240 (305)
T d1xkua_         166 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-----PHLRELHLNNNKLVKVPGGLAD  240 (305)
T ss_dssp             CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS-----TTCCEEECCSSCCSSCCTTTTT
T ss_pred             CcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc-----ccceeeeccccccccccccccc
Confidence                              33333444445555555555555554444444433     3568888888888755447777


Q ss_pred             CCCCCEEEcccCcCcccCcHHHHh------CCCCccEEEccCccC
Q 042660          222 LPNLKVLRLGSNQLFGMIPEELLE------SVIPIQELDLSGNGF  260 (261)
Q Consensus       222 ~~~L~~L~L~~n~l~~~~~~~~~~------~~~~L~~L~L~~N~l  260 (261)
                      +++|+.|++++|+|+ .++...|.      ...+|+.|++++|++
T Consensus       241 l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         241 HKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcC
Confidence            888888888888887 55544432      234678888888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=1.6e-21  Score=149.33  Aligned_cols=176  Identities=20%  Similarity=0.203  Sum_probs=106.4

Q ss_pred             CCCCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcC-CCCccccCCCCCCEEEccCCcCcCCCC
Q 042660           62 CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIG-PIPGRITDLWGLNYLNLSMNGFKGGFP  140 (261)
Q Consensus        62 c~~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p  140 (261)
                      |.|.+..|.|.           +++++ .+|+.+.  +++++|++++|.|++ ..+..|.++++|++|++++|.+....+
T Consensus         6 C~C~~~~v~Cs-----------~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~   71 (192)
T d1w8aa_           6 CHCEGTTVDCT-----------GRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP   71 (192)
T ss_dssp             SEEETTEEECT-----------TSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred             CEEcCCEEEEe-----------CCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc
Confidence            66678777775           34444 3444332  467777777777764 334556677777777777777776666


Q ss_pred             ccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCC
Q 042660          141 GNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFG  220 (261)
Q Consensus       141 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~  220 (261)
                      ..+..+++|++|++++|++....+..|.++++|++|+|++|.+++..+..+..+.     +|++++|++|.+........
T Consensus        72 ~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~-----~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-----SLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-----TCCEEECTTCCBCCSGGGHH
T ss_pred             cccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCc-----ccccccccccccccccchHH
Confidence            6777777777777777777766666777777777777777777665555555543     44777777777664433111


Q ss_pred             CCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          221 MLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       221 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      -...++.+.+..+.++...|..    +..++.++++.|.|
T Consensus       147 ~~~~l~~~~l~~~~~~c~~p~~----l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         147 FAEWLRKKSLNGGAARCGAPSK----VRDVQIKDLPHSEF  182 (192)
T ss_dssp             HHHHHHHHCCSGGGCBBCSSTT----TTTSBGGGSCTTTC
T ss_pred             HhhhhhhhcccCCCeEeCCChh----hcCCEeeecCHhhC
Confidence            0112344445555555444433    23444555665554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.1e-19  Score=143.91  Aligned_cols=173  Identities=19%  Similarity=0.161  Sum_probs=133.7

Q ss_pred             EEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCC--------------------
Q 042660           80 LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF--------------------  139 (261)
Q Consensus        80 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------  139 (261)
                      ++.++++++ .+|..+.  +.+++|++++|.|+.+.+..|.++++|++|++++|.+....                    
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            344455566 4555443  46899999999999888888999999999999999875322                    


Q ss_pred             -----CccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCc
Q 042660          140 -----PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITG  214 (261)
Q Consensus       140 -----p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~  214 (261)
                           +..|.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..+....     +|++|++++|++++
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~-----~L~~L~l~~N~l~~  167 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-----NLTHLFLHGNRISS  167 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCE
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcccc-----chhhcccccCcccc
Confidence                 44566677888888888888776677777778888888888888765555555443     56999999999988


Q ss_pred             cCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660          215 ELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       215 ~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      .++ .+..+++|+.+++++|.+++ +++..|..+++|+.||+++|+++
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cchhhhccccccchhhhhhccccc-cChhHhhhhhhcccccccccccc
Confidence            777 78889999999999999985 44455677789999999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=1.1e-17  Score=136.77  Aligned_cols=178  Identities=25%  Similarity=0.265  Sum_probs=130.5

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .++-++++++ .+|..+.  +.+++|++++|+|+...+..|.++++|++|++++|.+....|..|..+++|++|++++|+
T Consensus        14 ~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          14 VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             EEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            5788888888 5566653  579999999999997777789999999999999999998778899999999999999987


Q ss_pred             cccccc-----------------------------------------------hhccCCCCCCEEecccCcccccCCccc
Q 042660          159 LWGDIG-----------------------------------------------GIMSELKNVEFVDLSFNRFHGGLGVGA  191 (261)
Q Consensus       159 l~~~~~-----------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~p~~~  191 (261)
                      +.....                                               ..+..+++|+.+++++|.++.......
T Consensus        91 l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~  170 (305)
T d1xkua_          91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP  170 (305)
T ss_dssp             CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC
T ss_pred             cCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccC
Confidence            643211                                               112223455666666655542111111


Q ss_pred             cccccC----------------CCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEE
Q 042660          192 DNVSSI----------------ANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD  254 (261)
Q Consensus       192 ~~~~~l----------------~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  254 (261)
                      ..+..+                ..+.++.|++++|.+++..+ .+..+++|+.|+|++|.|+ .+|.+ +..+++|+.|+
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~-l~~l~~L~~L~  248 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVY  248 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT-TTTCSSCCEEE
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccc-cccccCCCEEE
Confidence            111000                02457888888888887777 7788899999999999998 67765 45678999999


Q ss_pred             ccCccCC
Q 042660          255 LSGNGFT  261 (261)
Q Consensus       255 L~~N~ls  261 (261)
                      +++|+|+
T Consensus       249 Ls~N~i~  255 (305)
T d1xkua_         249 LHNNNIS  255 (305)
T ss_dssp             CCSSCCC
T ss_pred             CCCCccC
Confidence            9999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.8e-18  Score=134.19  Aligned_cols=194  Identities=17%  Similarity=0.116  Sum_probs=116.7

Q ss_pred             CCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCC-CCccccCCCCCCEEEc
Q 042660           62 CPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGP-IPGRITDLWGLNYLNL  130 (261)
Q Consensus        62 c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l  130 (261)
                      |.|....|.|...          .+.++|++++|.|+...+..|.++++|++|++++|.+... .+..|.+++.++++.+
T Consensus         6 C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           6 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             EEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            6668888888531          2455899999998866666788899999999999988753 4556788888888887


Q ss_pred             cC-CcCcCCCCccccCCCCCCEEEcccCccccccch-hccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcc
Q 042660          131 SM-NGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGG-IMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLG  208 (261)
Q Consensus       131 ~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls  208 (261)
                      .. |.+....+..|.++++|+++++++|.+....+. .+..+..+..+...++.+....+..+....    ..++.++++
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~----~~l~~L~l~  161 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS----FESVILWLN  161 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB----SSCEEEECC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc----ccceeeecc
Confidence            54 567766777788889999999988887543221 223334444444444444432222222221    134555555


Q ss_pred             cCccCccCccCCCCCCCCEE-EcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660          209 DNGITGELPSFGMLPNLKVL-RLGSNQLFGMIPEELLESVIPIQELDLSGNGF  260 (261)
Q Consensus       209 ~n~l~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l  260 (261)
                      +|+++...+......++..+ .+.+|.++ .+|...|..+++|+.|++++|+|
T Consensus       162 ~n~l~~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         162 KNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRI  213 (242)
T ss_dssp             SSCCCEECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCC
T ss_pred             cccccccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcC
Confidence            55555433322222332222 33444554 45544445555555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=3.5e-17  Score=126.60  Aligned_cols=163  Identities=23%  Similarity=0.288  Sum_probs=133.4

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|+++++.++...  .+..+++|++|++++|.+++..+  +..+++|++|++++|++++ +| .+..+++|+.++++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccc-cc-cccccccccccccc
Confidence            4458999999998643  37889999999999999997543  6789999999999999985 44 58889999999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcC
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL  235 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l  235 (261)
                      +|.+...  ..+..++.++.+++++|.+++.  ..+..+     ++|+.+++++|++++. +.+..+++|+.|++++|.+
T Consensus       121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l-----~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL-----TKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGC-----TTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccc--cccccccccccccccccccccc--cccccc-----cccccccccccccccc-ccccCCCCCCEEECCCCCC
Confidence            9988543  4578899999999999998632  223333     5679999999999864 4578899999999999999


Q ss_pred             cccCcHHHHhCCCCccEEEccC
Q 042660          236 FGMIPEELLESVIPIQELDLSG  257 (261)
Q Consensus       236 ~~~~~~~~~~~~~~L~~L~L~~  257 (261)
                      + .++.  +..+++|+.|+|++
T Consensus       191 ~-~l~~--l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         191 S-DLRA--LAGLKNLDVLELFS  209 (210)
T ss_dssp             C-BCGG--GTTCTTCSEEEEEE
T ss_pred             C-CChh--hcCCCCCCEEEccC
Confidence            8 5653  56788999999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.5e-16  Score=121.92  Aligned_cols=159  Identities=21%  Similarity=0.288  Sum_probs=126.4

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ....|++++++++..  +.+..+++|++|++++|++++..+  +.++++|++|++++|.+.. ++ .+..++.|+.++++
T Consensus        41 ~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccccc
Confidence            445899999998853  347789999999999999987544  8899999999999999875 33 47899999999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcC
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL  235 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l  235 (261)
                      +|.+...  ..+..+++|+.+++++|.+.. + ..+...     ++++.|++++|.+++. +.+..+++|+.|++++|++
T Consensus       115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~-----~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         115 NNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGL-----TSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTC-----TTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccc--cccchhhhhHHhhhhhhhhcc-c-cccccc-----ccccccccccccccCC-ccccCCCCCCEEECCCCCC
Confidence            9988654  347789999999999999863 1 223333     5679999999999864 4578899999999999999


Q ss_pred             cccCcHHHHhCCCCccEE
Q 042660          236 FGMIPEELLESVIPIQEL  253 (261)
Q Consensus       236 ~~~~~~~~~~~~~~L~~L  253 (261)
                      + .++.  +..+++|+.|
T Consensus       185 ~-~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         185 S-DISV--LAKLTNLESL  199 (199)
T ss_dssp             C-CCGG--GGGCTTCSEE
T ss_pred             C-CCcc--ccCCCCCCcC
Confidence            8 4542  4567778765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=8e-17  Score=123.51  Aligned_cols=163  Identities=23%  Similarity=0.271  Sum_probs=129.2

Q ss_pred             EEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660           80 LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL  159 (261)
Q Consensus        80 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  159 (261)
                      ..+..+.+++.+.  ...+.++++|++++|.+...  ..+..+++|++|++++|.+++. ++ ++++++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCc-cc-ccCCccccccccccccc
Confidence            3455566665432  34577899999999999853  2477899999999999999864 33 88999999999999998


Q ss_pred             ccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccC
Q 042660          160 WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMI  239 (261)
Q Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~  239 (261)
                      ....  .+..++.|+.+++++|......  .+..+     ++|+.|++++|++. .++.+..+++++.|++.+|.++ .+
T Consensus        97 ~~~~--~l~~l~~L~~L~l~~~~~~~~~--~~~~l-----~~L~~L~l~~n~l~-~~~~l~~~~~L~~L~l~~n~l~-~l  165 (199)
T d2omxa2          97 ADIT--PLANLTNLTGLTLFNNQITDID--PLKNL-----TNLNRLELSSNTIS-DISALSGLTSLQQLNFSSNQVT-DL  165 (199)
T ss_dssp             CCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTC-----TTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCC-CC
T ss_pred             cccc--cccccccccccccccccccccc--ccchh-----hhhHHhhhhhhhhc-cccccccccccccccccccccc-CC
Confidence            6543  3789999999999999886421  23333     56799999999997 4556788999999999999998 45


Q ss_pred             cHHHHhCCCCccEEEccCccCC
Q 042660          240 PEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       240 ~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      +.  +..+++|+.|++++|+++
T Consensus       166 ~~--l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         166 KP--LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             GG--GTTCTTCCEEECCSSCCC
T ss_pred             cc--ccCCCCCCEEECCCCCCC
Confidence            43  567889999999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=7.3e-17  Score=123.04  Aligned_cols=135  Identities=24%  Similarity=0.206  Sum_probs=115.3

Q ss_pred             CCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCC-CCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660          101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG-FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS  179 (261)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  179 (261)
                      .+.++.++++++ .+|..+.  +.+++|+|++|.|++. .+..|.++++|+.|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            357889999998 5565543  6899999999999864 46677899999999999999999999999999999999999


Q ss_pred             cCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHH
Q 042660          180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEEL  243 (261)
Q Consensus       180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~  243 (261)
                      +|++++..+..+..+.     +|++|+|++|+|++.++ .|..+++|++|+|++|.+.......+
T Consensus        87 ~N~l~~l~~~~F~~l~-----~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLH-----QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             SCCCCEECSSSSTTCT-----TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             cccccccCHHHHhCCC-----cccccccCCccccccCHHHhcCCcccccccccccccccccchHH
Confidence            9999987777777765     56999999999998888 78999999999999999985544443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.6e-16  Score=120.83  Aligned_cols=162  Identities=27%  Similarity=0.301  Sum_probs=127.0

Q ss_pred             EcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccc
Q 042660           81 SLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLW  160 (261)
Q Consensus        81 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  160 (261)
                      .+..+.+.+.++.  ..+..+++|++++|.+....  .+..+++|++|++++|.+++. + .++.+++|+.|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc
Confidence            4455556554432  24668999999999998643  377899999999999999863 3 3678999999999999996


Q ss_pred             cccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCc
Q 042660          161 GDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIP  240 (261)
Q Consensus       161 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~  240 (261)
                      .. + .+..+++|+.+++++|.+.. + ..+..+     +.++.+++++|.+++ .+.+..+++|+.+++++|+++ .++
T Consensus       104 ~l-~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l-----~~l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~l~-~i~  172 (210)
T d1h6ta2         104 DL-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHL-----PQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQIS-DIV  172 (210)
T ss_dssp             CG-G-GGTTCTTCCEEECTTSCCCC-C-GGGGGC-----TTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCC-CCG
T ss_pred             cc-c-cccccccccccccccccccc-c-cccccc-----ccccccccccccccc-ccccccccccccccccccccc-ccc
Confidence            53 3 47889999999999998852 1 223333     467999999999984 345667889999999999998 454


Q ss_pred             HHHHhCCCCccEEEccCccCC
Q 042660          241 EELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       241 ~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      .  +..+++|+.|++++|+++
T Consensus       173 ~--l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         173 P--LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             G--GTTCTTCCEEECCSSCCC
T ss_pred             c--ccCCCCCCEEECCCCCCC
Confidence            3  567889999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2.5e-15  Score=117.30  Aligned_cols=164  Identities=24%  Similarity=0.336  Sum_probs=96.3

Q ss_pred             eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEccc
Q 042660           77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK  156 (261)
Q Consensus        77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  156 (261)
                      ...|++.+|+++. + +.+..+++|++|++++|.+.+..|  +..+++++++++++|.++. + ..+..+++|+.+++++
T Consensus        43 L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          43 ITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTS  116 (227)
T ss_dssp             CCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTT
T ss_pred             cCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-cccccccccccccccc
Confidence            3456666666653 2 235566666666666666654333  5566666666666666553 2 2355566666666665


Q ss_pred             Cccccccc--------------------hhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660          157 NKLWGDIG--------------------GIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL  216 (261)
Q Consensus       157 n~l~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  216 (261)
                      +...+..+                    ..+...++|+.|++++|.+.+..  .+..+     ++|++|++++|++++ +
T Consensus       117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l-----~~L~~L~Ls~n~l~~-l  188 (227)
T d1h6ua2         117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANL-----SKLTTLKADDNKISD-I  188 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTC-----TTCCEEECCSSCCCC-C
T ss_pred             ccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch--hhccc-----ccceecccCCCccCC-C
Confidence            55433211                    22445566777777777665221  12222     456788888877774 3


Q ss_pred             ccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccC
Q 042660          217 PSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSG  257 (261)
Q Consensus       217 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~  257 (261)
                      +.+..+++|++|++++|+++ .+++  +..+++|+.|++++
T Consensus       189 ~~l~~l~~L~~L~Ls~N~lt-~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 SPLASLPNLIEVHLKNNQIS-DVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGGGCTTCCEEECTTSCCC-BCGG--GTTCTTCCEEEEEE
T ss_pred             hhhcCCCCCCEEECcCCcCC-CCcc--cccCCCCCEEEeeC
Confidence            44666777888888888777 4443  45667777777763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=9.6e-16  Score=128.37  Aligned_cols=147  Identities=29%  Similarity=0.408  Sum_probs=90.5

Q ss_pred             ccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCC
Q 042660           95 LGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE  174 (261)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  174 (261)
                      +..+++++.+++++|.+.+..+  +..+++|++|+++++.+++. + .+..++.++.++++.|.+.+.  ..+..+++++
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~  310 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-S-PLAGLTALTNLELNENQLEDI--SPISNLKNLT  310 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCS
T ss_pred             hhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCC-C-ccccccccccccccccccccc--cccchhcccC
Confidence            3444444444444444443222  34444455555544444431 1 133444455555555544332  3356677888


Q ss_pred             EEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEE
Q 042660          175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD  254 (261)
Q Consensus       175 ~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  254 (261)
                      .+++++|++++..  .+..+     ++|++|++++|++++ ++.+..+++|++|++++|++++ +++  +..+++|+.|+
T Consensus       311 ~L~ls~n~l~~l~--~l~~l-----~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~l~~-l~~--l~~l~~L~~L~  379 (384)
T d2omza2         311 YLTLYFNNISDIS--PVSSL-----TKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISD-LTP--LANLTRITQLG  379 (384)
T ss_dssp             EEECCSSCCSCCG--GGGGC-----TTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCB-CGG--GTTCTTCSEEE
T ss_pred             eEECCCCCCCCCc--ccccC-----CCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCcCCC-Chh--hccCCCCCEee
Confidence            8888888887532  13333     567999999999885 4567788999999999999985 443  56678999999


Q ss_pred             ccCc
Q 042660          255 LSGN  258 (261)
Q Consensus       255 L~~N  258 (261)
                      +++|
T Consensus       380 L~~N  383 (384)
T d2omza2         380 LNDQ  383 (384)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            9987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=7.6e-15  Score=122.80  Aligned_cols=164  Identities=23%  Similarity=0.262  Sum_probs=126.9

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .+++++|.+++..|  +...++|++|++++|.++..  ..+..+++|+.+++++|.+++..  .++.+++|++++++++.
T Consensus       201 ~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~  274 (384)
T d2omza2         201 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQ  274 (384)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSC
T ss_pred             eeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcc
Confidence            77888888876543  45567888899998888753  35678888999999998888633  36778889999998888


Q ss_pred             cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCccc
Q 042660          159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM  238 (261)
Q Consensus       159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~  238 (261)
                      +.+..  .+..++.++.+++..|.+.+.  ..+..+     .+++.|++++|++++.. .+..+++|+.|++++|.++ .
T Consensus       275 l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~-----~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~-~  343 (384)
T d2omza2         275 ISNIS--PLAGLTALTNLELNENQLEDI--SPISNL-----KNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVS-D  343 (384)
T ss_dssp             CCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGC-----TTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCC-C
T ss_pred             cCCCC--ccccccccccccccccccccc--cccchh-----cccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCC-C
Confidence            86543  366788888999888888632  223333     56799999999999754 4677899999999999998 4


Q ss_pred             CcHHHHhCCCCccEEEccCccCC
Q 042660          239 IPEELLESVIPIQELDLSGNGFT  261 (261)
Q Consensus       239 ~~~~~~~~~~~L~~L~L~~N~ls  261 (261)
                      ++ . +..+++|+.|++++|+++
T Consensus       344 l~-~-l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         344 VS-S-LANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CG-G-GGGCTTCCEEECCSSCCC
T ss_pred             Ch-h-HcCCCCCCEEECCCCcCC
Confidence            55 3 567889999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.1e-14  Score=111.91  Aligned_cols=144  Identities=19%  Similarity=0.228  Sum_probs=108.8

Q ss_pred             CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCC---------------
Q 042660           75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF---------------  139 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------  139 (261)
                      .+...|++++|.+.+..+  +..+++++++++++|.++..  ..+.++++|++++++++...+..               
T Consensus        63 ~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (227)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCcEeecCCceeecccc--cccccccccccccccccccc--ccccccccccccccccccccccchhccccchhhhhchh
Confidence            466789999998886443  78888899999998888743  24677888888888877655311               


Q ss_pred             -----CccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCc
Q 042660          140 -----PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITG  214 (261)
Q Consensus       140 -----p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~  214 (261)
                           ...+..+++|+.|++++|.+....  .++++++|+.|++++|.+++. + .+..+     ++|++|++++|++++
T Consensus       139 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l-----~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         139 NQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASL-----PNLIEVHLKNNQISD  209 (227)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGC-----TTCCEEECTTSCCCB
T ss_pred             hhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCC-----CCCCEEECcCCcCCC
Confidence                 123456678999999999886543  378899999999999999742 2 23333     567999999999996


Q ss_pred             cCccCCCCCCCCEEEccc
Q 042660          215 ELPSFGMLPNLKVLRLGS  232 (261)
Q Consensus       215 ~~~~~~~~~~L~~L~L~~  232 (261)
                      .. .+..+++|+.|++++
T Consensus       210 i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         210 VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CG-GGTTCTTCCEEEEEE
T ss_pred             Cc-ccccCCCCCEEEeeC
Confidence            54 578899999999863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.5e-15  Score=110.34  Aligned_cols=129  Identities=20%  Similarity=0.173  Sum_probs=85.2

Q ss_pred             cccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCC
Q 042660           94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNV  173 (261)
Q Consensus        94 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  173 (261)
                      .+.+...+++|++++|+|+.+ +..+..+++|++|++++|.++. + +.+..+++|++|++++|++....+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            455667788888888888854 5556778888888888888874 3 347778888888888888876666666677888


Q ss_pred             CEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc----cCCCCCCCCEEE
Q 042660          174 EFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP----SFGMLPNLKVLR  229 (261)
Q Consensus       174 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~~~L~~L~  229 (261)
                      ++|++++|.++.. + .+..+..  .++|++|++++|.++..+.    .+..+++|+.||
T Consensus        90 ~~L~L~~N~i~~~-~-~l~~l~~--l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVEL-G-DLDPLAS--LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCG-G-GGGGGGG--CTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceecccccccc-c-ccccccc--ccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888888877521 1 1111211  1455666666666654321    244556666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.4e-15  Score=111.21  Aligned_cols=127  Identities=17%  Similarity=0.065  Sum_probs=82.9

Q ss_pred             ccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCC
Q 042660          119 ITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA  198 (261)
Q Consensus       119 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~  198 (261)
                      +.+..++++|++++|+|+. ++..+..+++|+.|++++|.+...  +.+..+++|++|++++|.+++..+..+..+    
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l----   86 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL----   86 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC----
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccc----
Confidence            4566677777777777774 455556677777777777777543  236677777777777777764433333334    


Q ss_pred             CCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCcccCc---HHHHhCCCCccEEE
Q 042660          199 NTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIP---EELLESVIPIQELD  254 (261)
Q Consensus       199 ~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~  254 (261)
                       ++|+.|++++|+++....  .+..+++|++|++++|.++ ..|   ..++..+++|+.||
T Consensus        87 -~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          87 -PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             -TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             -cccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence             345777777777765432  4666777777777777776 343   23455566777766

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.6e-14  Score=101.85  Aligned_cols=78  Identities=24%  Similarity=0.312  Sum_probs=46.1

Q ss_pred             CEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccC
Q 042660          102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN  181 (261)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  181 (261)
                      |+|++++|+++. ++ .+..+++|++|++++|.++. +|+.++.+++|++|++++|.++.. | .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            456667776663 23 25666666666666666663 555566666666666666666443 2 2555555555555555


Q ss_pred             ccc
Q 042660          182 RFH  184 (261)
Q Consensus       182 ~l~  184 (261)
                      +++
T Consensus        76 ~i~   78 (124)
T d1dcea3          76 RLQ   78 (124)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2.8e-14  Score=100.56  Aligned_cols=102  Identities=24%  Similarity=0.279  Sum_probs=88.3

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK  158 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  158 (261)
                      .|++++|+++. ++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++. +| .+..+++|+.+++++|+
T Consensus         2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            58999999984 44 4889999999999999998 567789999999999999999986 44 48899999999999999


Q ss_pred             ccccc-chhccCCCCCCEEecccCcccc
Q 042660          159 LWGDI-GGIMSELKNVEFVDLSFNRFHG  185 (261)
Q Consensus       159 l~~~~-~~~~~~l~~L~~L~l~~n~l~~  185 (261)
                      +.... ...+..+++|+++++++|++++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            97653 3568889999999999999863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.9e-13  Score=107.33  Aligned_cols=174  Identities=17%  Similarity=0.120  Sum_probs=131.3

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCC-CccccCCCCCCEEEcc-c
Q 042660           79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF-PGNLRNLQQLKVLDLR-K  156 (261)
Q Consensus        79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~-~  156 (261)
                      .++.++.+++ .+|+.+.  +++++|++++|.++...+..|.++++|++|++++|.+...+ +..|..++.++++.+. .
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            5777888888 5665543  57999999999999777778999999999999999987643 5578889999999876 4


Q ss_pred             CccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCC-CCCEEEcccCc
Q 042660          157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLP-NLKVLRLGSNQ  234 (261)
Q Consensus       157 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~-~L~~L~L~~n~  234 (261)
                      |.+....+..+..+++|+++++++|.+....+  ......+  ..+..+..+++.+....+ .+..++ .++.+++.+|.
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~~~l--~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIHSL--QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CTTTCBS--SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccccccccccccccccccccccchhhhccccc--ccccccc--cccccccccccccccccccccccccccceeeeccccc
Confidence            67878888889999999999999999864322  2222222  455667777778876655 666654 79999999999


Q ss_pred             CcccCcHHHHhCCCCccEE-EccCccCC
Q 042660          235 LFGMIPEELLESVIPIQEL-DLSGNGFT  261 (261)
Q Consensus       235 l~~~~~~~~~~~~~~L~~L-~L~~N~ls  261 (261)
                      ++ .++...+.. .++..+ ++++|.++
T Consensus       165 l~-~i~~~~~~~-~~l~~~~~l~~n~l~  190 (242)
T d1xwdc1         165 IQ-EIHNCAFNG-TQLDELNLSDNNNLE  190 (242)
T ss_dssp             CC-EECTTTTTT-CCEEEEECTTCTTCC
T ss_pred             cc-ccccccccc-hhhhccccccccccc
Confidence            98 666666554 444444 56777663

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.47  E-value=1.5e-12  Score=107.12  Aligned_cols=75  Identities=29%  Similarity=0.322  Sum_probs=55.5

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      ...+|++++|+|+ .+|..   ..+|+.|++.+|+++.. +. +  .+.|++|++++|.+.. +|. ++.+++|++++++
T Consensus        59 ~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          59 HLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             TCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECCSSCCSS-CCC-CTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh-h--cccccccccccccccc-ccc-hhhhccceeeccc
Confidence            4568888888888 45654   35788888888888732 22 1  1358999999999885 564 5788999999999


Q ss_pred             cCccc
Q 042660          156 KNKLW  160 (261)
Q Consensus       156 ~n~l~  160 (261)
                      ++.+.
T Consensus       129 ~~~~~  133 (353)
T d1jl5a_         129 NNSLK  133 (353)
T ss_dssp             SSCCS
T ss_pred             ccccc
Confidence            88764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.2e-13  Score=98.95  Aligned_cols=99  Identities=19%  Similarity=0.119  Sum_probs=81.8

Q ss_pred             CCCccccCcccccCCCCCCEEECcCC-cCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccc
Q 042660           84 GNNFTGRIVPALGSISSLQYLDLSNN-KFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGD  162 (261)
Q Consensus        84 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  162 (261)
                      ++++. ..|..+..++++++|++.+| .++.+.+.+|.++++|+.|++++|+++...+.+|..+++|++|++++|++...
T Consensus        17 ~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l   95 (156)
T d2ifga3          17 RDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL   95 (156)
T ss_dssp             SSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred             CCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCccc
Confidence            34444 45667888899999999766 48877778899999999999999999987788899999999999999999766


Q ss_pred             cchhccCCCCCCEEecccCccc
Q 042660          163 IGGIMSELKNVEFVDLSFNRFH  184 (261)
Q Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~  184 (261)
                      .+..+... +|+.|++++|.+.
T Consensus        96 ~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          96 SWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CSTTTCSC-CCCEEECCSSCCC
T ss_pred             Chhhhccc-cccccccCCCccc
Confidence            66666544 6999999999884

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5e-12  Score=92.39  Aligned_cols=106  Identities=18%  Similarity=0.109  Sum_probs=82.4

Q ss_pred             CCEEECcCCcCcCCCCccccCCCCCCEEEccCC-cCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660          101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMN-GFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS  179 (261)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  179 (261)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+++...+..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            445777777777 45667788889999999766 4887667788999999999999999988888889999999999999


Q ss_pred             cCcccccCCccccccccCCCCCccEEEcccCccC
Q 042660          180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGIT  213 (261)
Q Consensus       180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~  213 (261)
                      +|+++. +|......     .+|+.|+|++|.+.
T Consensus        89 ~N~l~~-l~~~~~~~-----~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALES-LSWKTVQG-----LSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSC-CCSTTTCS-----CCCCEEECCSSCCC
T ss_pred             CCCCcc-cChhhhcc-----ccccccccCCCccc
Confidence            999873 33332222     24688899888875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=1.1e-14  Score=111.31  Aligned_cols=115  Identities=20%  Similarity=0.165  Sum_probs=65.3

Q ss_pred             CcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCC
Q 042660           91 IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSEL  170 (261)
Q Consensus        91 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  170 (261)
                      ++.++..+++|++|++++|.|+.+ + .+..+++|++|++++|.++. +|..+..+++|+.|++++|.++..  +.+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccc
Confidence            445666777777777777777643 2 36667777777777777663 444444445677777777766543  234555


Q ss_pred             CCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCc
Q 042660          171 KNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITG  214 (261)
Q Consensus       171 ~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~  214 (261)
                      ++|++|++++|.+++..  .+..+..  .++|+.|++++|.+..
T Consensus       115 ~~L~~L~L~~N~i~~~~--~~~~l~~--l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWG--EIDKLAA--LDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHSSEEEESEEECCCHH--HHHHHTT--TTTCSEEEECSSHHHH
T ss_pred             ccccccccccchhcccc--ccccccC--CCccceeecCCCcccc
Confidence            66666666666664211  0111111  1345666666665543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.3e-13  Score=115.85  Aligned_cols=81  Identities=25%  Similarity=0.290  Sum_probs=48.8

Q ss_pred             EEEcCCCCccc----cCcccccCCCCCCEEECcCCcCcCC----CCcccc-CCCCCCEEEccCCcCcCC----CCccccC
Q 042660           79 NLSLSGNNFTG----RIVPALGSISSLQYLDLSNNKFIGP----IPGRIT-DLWGLNYLNLSMNGFKGG----FPGNLRN  145 (261)
Q Consensus        79 ~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~l~~~----~p~~~~~  145 (261)
                      +|+|++|+++.    .++..+...++|++|++++|.|+..    +...+. ...+|++|++++|.++..    ++..+..
T Consensus        31 ~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~  110 (460)
T d1z7xw1          31 VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT  110 (460)
T ss_dssp             EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhc
Confidence            57777777663    2344456677777777777776421    111221 234677777777777542    3445566


Q ss_pred             CCCCCEEEcccCcc
Q 042660          146 LQQLKVLDLRKNKL  159 (261)
Q Consensus       146 l~~L~~L~l~~n~l  159 (261)
                      +++|++|++++|.+
T Consensus       111 ~~~L~~L~L~~N~i  124 (460)
T d1z7xw1         111 LPTLQELHLSDNLL  124 (460)
T ss_dssp             CTTCCEEECCSSBC
T ss_pred             cccccccccccccc
Confidence            77777777777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.26  E-value=4.8e-13  Score=110.53  Aligned_cols=184  Identities=21%  Similarity=0.206  Sum_probs=121.3

Q ss_pred             CeEEEEcCCCCcccc----CcccccCCCCCCEEECcCCcCcCCCCc-------------cccCCCCCCEEEccCCcCcCC
Q 042660           76 GSVNLSLSGNNFTGR----IVPALGSISSLQYLDLSNNKFIGPIPG-------------RITDLWGLNYLNLSMNGFKGG  138 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~  138 (261)
                      ....|++++|.++..    +...+...++|++|++++|.+......             .....+.|+.+.+++|.++..
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             CcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccc
Confidence            455788888887754    333445677888888888876421111             113466788888888877632


Q ss_pred             ----CCccccCCCCCCEEEcccCccccc-----cchhccCCCCCCEEecccCcccccCCccccc-cccCCCCCccEEEcc
Q 042660          139 ----FPGNLRNLQQLKVLDLRKNKLWGD-----IGGIMSELKNVEFVDLSFNRFHGGLGVGADN-VSSIANTNLEVLDLG  208 (261)
Q Consensus       139 ----~p~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-~~~l~~~~L~~L~Ls  208 (261)
                          +...+.....|+.|++++|.+...     +...+...++|+.|++++|.++......+.. +..  .++|++|+++
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~--~~~L~~L~Ls  251 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS--WPNLRELGLN  251 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG--CTTCCEEECT
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc--cccchhhhhh
Confidence                233345667899999999988643     3345677889999999999886432222221 111  2567999999


Q ss_pred             cCccCccCc-----cCC--CCCCCCEEEcccCcCcccCcHHHH----hCCCCccEEEccCccCC
Q 042660          209 DNGITGELP-----SFG--MLPNLKVLRLGSNQLFGMIPEELL----ESVIPIQELDLSGNGFT  261 (261)
Q Consensus       209 ~n~l~~~~~-----~~~--~~~~L~~L~L~~n~l~~~~~~~~~----~~~~~L~~L~L~~N~ls  261 (261)
                      +|.+++...     .+.  ....|+.|++++|.++......+.    ...+.|++|++++|.|+
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            999876322     222  245799999999998754333333    23468999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=3.8e-14  Score=108.16  Aligned_cols=130  Identities=25%  Similarity=0.359  Sum_probs=89.5

Q ss_pred             CCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCcccccc
Q 042660          115 IPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNV  194 (261)
Q Consensus       115 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  194 (261)
                      ++..+..+++|++|++++|.++. ++ .+..+++|+.|++++|.+.. ++.....+++|++|++++|.++..  ..+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccc
Confidence            44567778888888888888874 33 47778888888888888854 444445556788888888888632  123333


Q ss_pred             ccCCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCcccCcH---------HHHhCCCCccEEE
Q 042660          195 SSIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPE---------ELLESVIPIQELD  254 (261)
Q Consensus       195 ~~l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~---------~~~~~~~~L~~L~  254 (261)
                           ++|+.|++++|+++....  .+..+++|+.|++++|++....+.         .++..+++|+.||
T Consensus       115 -----~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         115 -----VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             -----HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             -----ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence                 356888888888876433  577788888888888877532221         1245567788776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.9e-12  Score=102.25  Aligned_cols=178  Identities=22%  Similarity=0.201  Sum_probs=111.0

Q ss_pred             CeEEEEcCCCCcccc-CcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCC-cCcCC-CCccccCCCCCCEE
Q 042660           76 GSVNLSLSGNNFTGR-IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMN-GFKGG-FPGNLRNLQQLKVL  152 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L  152 (261)
                      ....|+++++.+... +...+..+++|++|+++++.+.+..+..+..+++|++|+++++ .++.. +......+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            445788888887754 3445677888999999988887766777788888999998885 45432 12223467888888


Q ss_pred             EcccCc-cccc-cchhcc-CCCCCCEEecccCc--ccccCCccccccccCCCCCccEEEcccC-ccCccCc-cCCCCCCC
Q 042660          153 DLRKNK-LWGD-IGGIMS-ELKNVEFVDLSFNR--FHGGLGVGADNVSSIANTNLEVLDLGDN-GITGELP-SFGMLPNL  225 (261)
Q Consensus       153 ~l~~n~-l~~~-~~~~~~-~l~~L~~L~l~~n~--l~~~~p~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~-~~~~~~~L  225 (261)
                      +++++. ++.. ....+. ..+.|+.|+++++.  ++..   .+..+.. ..++|++|++++| .+++... .+..+++|
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~---~l~~l~~-~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS---DLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH---HHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccc---ccccccc-ccccccccccccccCCCchhhhhhcccCcC
Confidence            888753 3322 222222 34678888887642  3211   1111100 1246688888775 4554444 66677788


Q ss_pred             CEEEcccC-cCcccCcHHHHhCCCCccEEEccCc
Q 042660          226 KVLRLGSN-QLFGMIPEELLESVIPIQELDLSGN  258 (261)
Q Consensus       226 ~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~L~~N  258 (261)
                      ++|++++| .+++.....+ ..+++|+.|+++++
T Consensus       203 ~~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~~  235 (284)
T d2astb2         203 QHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI  235 (284)
T ss_dssp             CEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS
T ss_pred             CEEECCCCCCCChHHHHHH-hcCCCCCEEeeeCC
Confidence            88888774 5665444443 34567888887765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.8e-11  Score=97.14  Aligned_cols=157  Identities=22%  Similarity=0.200  Sum_probs=113.4

Q ss_pred             CCCCCCEEECcCCcCcCC-CCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC-ccccc-cchhccCCCCC
Q 042660           97 SISSLQYLDLSNNKFIGP-IPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN-KLWGD-IGGIMSELKNV  173 (261)
Q Consensus        97 ~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L  173 (261)
                      ....|++|+++++.+... +...+..+++|++|+++++.+++..+..+..+++|++|+++++ .++.. +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            456899999999988643 3445678999999999999998777888889999999999995 55433 23334678999


Q ss_pred             CEEecccCc-cccc-CCccccccccCCCCCccEEEcccC--ccCcc-Cc-cCCCCCCCCEEEcccC-cCcccCcHHHHhC
Q 042660          174 EFVDLSFNR-FHGG-LGVGADNVSSIANTNLEVLDLGDN--GITGE-LP-SFGMLPNLKVLRLGSN-QLFGMIPEELLES  246 (261)
Q Consensus       174 ~~L~l~~n~-l~~~-~p~~~~~~~~l~~~~L~~L~Ls~n--~l~~~-~~-~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~  246 (261)
                      ++|+++++. +++. ....+...    .++|+.|+++++  .+++. +. ....+++|++|++++| .+++.....+ ..
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l-~~  198 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHV----SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQ  198 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHS----CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GG
T ss_pred             cccccccccccccccchhhhccc----ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh-cc
Confidence            999999863 4321 11111111    246899999975  34432 22 3456889999999986 5776555555 45


Q ss_pred             CCCccEEEccCc
Q 042660          247 VIPIQELDLSGN  258 (261)
Q Consensus       247 ~~~L~~L~L~~N  258 (261)
                      +++|++|++++|
T Consensus       199 ~~~L~~L~L~~C  210 (284)
T d2astb2         199 LNYLQHLSLSRC  210 (284)
T ss_dssp             CTTCCEEECTTC
T ss_pred             cCcCCEEECCCC
Confidence            689999999995

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=6.5e-12  Score=103.57  Aligned_cols=185  Identities=21%  Similarity=0.147  Sum_probs=113.3

Q ss_pred             CCeEEEEcCCCCcccc----------CcccccCCCCCCEEECcCCcCcCCC----CccccCCCCCCEEEccCCcCcCCCC
Q 042660           75 SGSVNLSLSGNNFTGR----------IVPALGSISSLQYLDLSNNKFIGPI----PGRITDLWGLNYLNLSMNGFKGGFP  140 (261)
Q Consensus        75 ~~~~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~p  140 (261)
                      .....++++++.....          +...+...++|+.|++++|.+....    ...+...++|++|++++|.++....
T Consensus        59 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~  138 (344)
T d2ca6a1          59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  138 (344)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccc
Confidence            3445666666543321          1223445667777777777776432    2233456777777777776642111


Q ss_pred             c-------------cccCCCCCCEEEcccCccccc----cchhccCCCCCCEEecccCcccccCCcc-ccc-cccCCCCC
Q 042660          141 G-------------NLRNLQQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFHGGLGVG-ADN-VSSIANTN  201 (261)
Q Consensus       141 ~-------------~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~-~~~l~~~~  201 (261)
                      .             .....+.|+.+.+++|.+...    +...+...+.++.+++++|.++...... +.. +.  ..++
T Consensus       139 ~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~--~~~~  216 (344)
T d2ca6a1         139 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--YCQE  216 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG--GCTT
T ss_pred             ccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhc--chhh
Confidence            0             112455677777777776533    3334556788999999998886321111 111 11  1356


Q ss_pred             ccEEEcccCccCcc----Cc-cCCCCCCCCEEEcccCcCcccCcHHHHh---C--CCCccEEEccCccCC
Q 042660          202 LEVLDLGDNGITGE----LP-SFGMLPNLKVLRLGSNQLFGMIPEELLE---S--VIPIQELDLSGNGFT  261 (261)
Q Consensus       202 L~~L~Ls~n~l~~~----~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~---~--~~~L~~L~L~~N~ls  261 (261)
                      |+.|++++|.++..    +. .+...++|+.|++++|.+++.....+..   .  ...|++|++++|.++
T Consensus       217 L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         217 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            89999999998642    22 5677889999999999998654444432   1  247999999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.9e-11  Score=101.71  Aligned_cols=184  Identities=18%  Similarity=0.070  Sum_probs=114.4

Q ss_pred             EEEEcCCCCcccc-----CcccccCCCCCCEEECcCCcCcCC----CCccccCCCCCCEEEccCCcCcCCCCcc----c-
Q 042660           78 VNLSLSGNNFTGR-----IVPALGSISSLQYLDLSNNKFIGP----IPGRITDLWGLNYLNLSMNGFKGGFPGN----L-  143 (261)
Q Consensus        78 ~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~----~-  143 (261)
                      ..+++.+|.+...     ..........++.+++++|.+...    ....+...+.++.+++++|.++......    + 
T Consensus       229 ~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~  308 (460)
T d1z7xw1         229 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL  308 (460)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred             cccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccc
Confidence            3677777765422     223334566788888888877532    2223455777888888888876322211    1 


Q ss_pred             cCCCCCCEEEcccCccccccch----hccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc----
Q 042660          144 RNLQQLKVLDLRKNKLWGDIGG----IMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE----  215 (261)
Q Consensus       144 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~----  215 (261)
                      .....|+.++++++.+......    .+...++|++|++++|.+++.....+...-......|++|+|++|.+++.    
T Consensus       309 ~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~  388 (460)
T d1z7xw1         309 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS  388 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred             ccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHH
Confidence            2345788888888887655433    33455688999999888864322222211111124578999999988752    


Q ss_pred             Cc-cCCCCCCCCEEEcccCcCcccCcHHHHh----CCCCccEEEccCccCC
Q 042660          216 LP-SFGMLPNLKVLRLGSNQLFGMIPEELLE----SVIPIQELDLSGNGFT  261 (261)
Q Consensus       216 ~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~----~~~~L~~L~L~~N~ls  261 (261)
                      ++ .+...++|++|++++|.|++.....+.+    ....|+.|++.+|.++
T Consensus       389 l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         389 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            22 3456678899999999887654444432    2236888998888764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.85  E-value=4.6e-08  Score=79.55  Aligned_cols=137  Identities=21%  Similarity=0.245  Sum_probs=103.3

Q ss_pred             CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660           76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR  155 (261)
Q Consensus        76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  155 (261)
                      +..+|++++++++ .+|+.   .++|++|++++|+|+ .+|..   ..+|+.|++++|+++. +++.   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhhh---cccccccccc
Confidence            3458999999998 46653   468999999999999 55654   4589999999999884 3431   2469999999


Q ss_pred             cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcC
Q 042660          156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL  235 (261)
Q Consensus       156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l  235 (261)
                      +|.+.. +|. ++.++.|++++++++.+.... ...        ..+..+.+..+... ....+..++.++.+.+..|.+
T Consensus       107 ~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~-~~~--------~~l~~l~~~~~~~~-~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         107 NNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLP-DLP--------PSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             SSCCSS-CCC-CTTCTTCCEEECCSSCCSCCC-CCC--------TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCC
T ss_pred             cccccc-ccc-hhhhccceeeccccccccccc-ccc--------ccccchhhcccccc-ccccccccccceecccccccc
Confidence            999965 443 578999999999999886322 111        34577887776654 333667788999999999988


Q ss_pred             c
Q 042660          236 F  236 (261)
Q Consensus       236 ~  236 (261)
                      .
T Consensus       175 ~  175 (353)
T d1jl5a_         175 K  175 (353)
T ss_dssp             S
T ss_pred             c
Confidence            7

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.1e-09  Score=78.60  Aligned_cols=40  Identities=28%  Similarity=0.480  Sum_probs=20.1

Q ss_pred             CCCCCCEEEcccCccccc--cchhccCCCCCCEEecccCccc
Q 042660          145 NLQQLKVLDLRKNKLWGD--IGGIMSELKNVEFVDLSFNRFH  184 (261)
Q Consensus       145 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~  184 (261)
                      .++.|++|++++|+++..  ++..+..+++|+.|++++|.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            445555555555555432  2233444555555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.1e-07  Score=69.22  Aligned_cols=65  Identities=29%  Similarity=0.191  Sum_probs=30.4

Q ss_pred             CCCCCCEEECcCCcCcCCC--CccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcccc
Q 042660           97 SISSLQYLDLSNNKFIGPI--PGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWG  161 (261)
Q Consensus        97 ~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  161 (261)
                      .++.|++|++++|+|+...  +..+..+++|+.|++++|.++...+-.+....+|+.+++++|.+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            4555555556655555332  2233445555555555555553222122223345555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.96  E-value=5e-06  Score=60.39  Aligned_cols=64  Identities=9%  Similarity=0.101  Sum_probs=33.1

Q ss_pred             CCCCCCEEEccCC-cCcCC----CCccccCCCCCCEEEcccCccccc----cchhccCCCCCCEEecccCccc
Q 042660          121 DLWGLNYLNLSMN-GFKGG----FPGNLRNLQQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFH  184 (261)
Q Consensus       121 ~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~  184 (261)
                      +.++|++|+++++ .++..    +...+...+.|++|++++|.+...    +.+.+...+.|++|++++|.++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3456667777653 34321    223344555666666666666432    2233334455666666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=3.2e-06  Score=61.44  Aligned_cols=88  Identities=10%  Similarity=0.077  Sum_probs=56.3

Q ss_pred             CCCCCCEEECcCC-cCcCC----CCccccCCCCCCEEEccCCcCcCC----CCccccCCCCCCEEEcccCcccccc----
Q 042660           97 SISSLQYLDLSNN-KFIGP----IPGRITDLWGLNYLNLSMNGFKGG----FPGNLRNLQQLKVLDLRKNKLWGDI----  163 (261)
Q Consensus        97 ~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----  163 (261)
                      +.+.|++|+++++ .+...    +...+...+.|++|++++|.++..    +...+...+.|++|++++|.+....    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4567888888763 45421    223456667788888888877632    2334445677888888888886542    


Q ss_pred             chhccCCCCCCEEecccCccc
Q 042660          164 GGIMSELKNVEFVDLSFNRFH  184 (261)
Q Consensus       164 ~~~~~~l~~L~~L~l~~n~l~  184 (261)
                      ...+...++|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            334556677777777776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.41  E-value=2.4e-05  Score=56.52  Aligned_cols=65  Identities=9%  Similarity=0.057  Sum_probs=38.1

Q ss_pred             cCCCCCCEEEccC-CcCcCC----CCccccCCCCCCEEEcccCcccccc----chhccCCCCCCEEecccCccc
Q 042660          120 TDLWGLNYLNLSM-NGFKGG----FPGNLRNLQQLKVLDLRKNKLWGDI----GGIMSELKNVEFVDLSFNRFH  184 (261)
Q Consensus       120 ~~l~~L~~L~l~~-n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~  184 (261)
                      .+.+.|++|++++ +.++..    +...+...++|++|++++|.+....    .+.+...+.++.+++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            4556777777776 345421    2334456667777777777664432    233444566677776666664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.22  E-value=1e-05  Score=58.59  Aligned_cols=89  Identities=11%  Similarity=0.089  Sum_probs=56.4

Q ss_pred             ccCCCCCCEEECcC-CcCcCC----CCccccCCCCCCEEEccCCcCcCC----CCccccCCCCCCEEEcccCccccc---
Q 042660           95 LGSISSLQYLDLSN-NKFIGP----IPGRITDLWGLNYLNLSMNGFKGG----FPGNLRNLQQLKVLDLRKNKLWGD---  162 (261)
Q Consensus        95 ~~~l~~L~~L~l~~-n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~---  162 (261)
                      ..+.+.|++|++++ +.++..    +...+...++|++|++++|.++..    +...+...++++.+++++|.+...   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34567888888886 445421    333456778888888888887643    223445567888888888887544   


Q ss_pred             -cchhccCCCCCCEEecc--cCcc
Q 042660          163 -IGGIMSELKNVEFVDLS--FNRF  183 (261)
Q Consensus       163 -~~~~~~~l~~L~~L~l~--~n~l  183 (261)
                       +.+.+...++|+.+++.  +|.+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHHHHhCccccEEeeccCCCcC
Confidence             23445556667765553  3444