Citrus Sinensis ID: 042680

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
Protein Sequence
MAKASSKKVQSLILLAAVLLLVNNAAAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHccccccccccccEEEEccccccccEEEEEEEccccEEEEEEccccccccccccccccccccccccccccccccccEEcEEEEcccccEEEcccccccccccccccccccEEEEccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEcccEEEEEcccccEEEEccccccccccccccccEEEcccccccccccccccEEEEEEEccccccccccccccccccccccEEEEEcccccccEEcccccccccccEEEcccccEEEEcccccccccccccccccccEEEEccccccccccccccccccccccccccEEcccccEEEEccccccccccccccccccEEEEEccccccccccccccEEEcccccccEEcccEEEEEEEccccccccEEEEEEEccccccccccccccEEEEEEEEEccccccccEEEEEEccccccccccccEEEEEEccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccHHHEEHcccccEEEEEEcccccccccccccccccccccccccccccccccccEEEEEccccccEEEcccccccEEccccEccccEEEEEccccEEEEEcccccccEcccccccccccEEEEcccccccccccccccccccccccccccEEEEEcccccEEEEEcccEEEEEccccEEEEEcccccccccccccccccEEEccccccccccccccEEEEEccccccccccHcccccccccccccccEccccccccEEEcccccccccccEEEcccccEEEEEccccccccccccccccccEEEEccccccccEEEEcccccccccccEEEEEcccccEEEEEcccccccccccccccEEEEEEEccccccccccccccEEEEcccccEEEcccEEEEEEEEccccccccEEEEEEccccEEcccccccEEEEEEEEccccccccccEEEEEEcccccccccccEEEEEEEEccccccEEEEEEc
Coil and Loop (DISEMBL)
MAKASSKKVQSLILLAAVLLLVNNaaaapaggflgsWELISQNAGISAmhtqllpktdqiAVFDASVWHIsrlqlpqekrpcfwhhnkltnqtaedcwchsifyDYNKNAVKALKVQsdtwcssgglsadgrlvmlsdgsflvyggrdafsyeyvpvekesnkaaiafpflfetqdflerpgnpkgrfrlennlypfvyllpdgnvyvfannrsvvhdpkankiirefpqlpggarsypatgtsvllplylprdtykpvdaeVLICggsvreglylgeEEKRFVNALddcarmvvtspnpewkiekmpaprtmadgvllpngevliingadlgsggwhcadkpslkpmlyrpnapegqrfaelaptdiprmyHSVAnllpdgkvfvggsndndgyfefakfptelrlekftppylapeyaalrpailedqsdkaatygKWVYLRVkssepltinyVQVSivappfvthgismNQRMLFLSVIELknnvapgvdevvvaapptsalappgyyLLSVVnqgipshsiwfhlk
Flexible Loop (DISEMBL)
MAKASSKKVQSLILLAAVLLLVNNAAAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTspnpewkiekmpapRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK
Low Complexity Region (SEG)
MAKASSKKVQSlillaavlllvnnaaaaPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK
Disordered region (IsUnstruct)
*********QSLILLAAVLLLVNNAAAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLY*********FAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFH**
Disordered Region (DISOPRED)
***********LILLAAVLLLVNNAAAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK
Disordered Region (DISEMBL)
*********QSLILLAAVLLLVNNAAAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK
Disordered Region (DISPRO)
*****SKKVQSLILLAAVLLLVNNAAAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKASSKKVQSLILLAAVLLLVNNAAAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	530	2.2.26 [Sep-21-2011]
I1S2N3	680	Galactose oxidase OS=Gibb	no	no	0.450	0.351	0.281	1e-12
P0CS93	680	Galactose oxidase OS=Gibb	no	no	0.450	0.351	0.288	2e-12

>sp|I1S2N3|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 111/270 (41%), Gaps = 31/270 (11%)

Query: 256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
           Y  V  ++L  GGS        ++     NA         TSPN  +    +   RT   
Sbjct: 430 YDAVKGKILTFGGSPDY-----QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 484

Query: 316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
            V+LP+G   I  G   G         P   P +Y    PE   F +  P  I R+YHS+
Sbjct: 485 SVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIY---VPEQDTFYKQNPNSIVRVYHSI 539

Query: 376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYA--ALRPAILEDQSDK 433
           + LLPDG+VF GG     G             + FTP YL       A RP I    +  
Sbjct: 540 SLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS 594

Query: 434 AATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVD 493
               G+   + + +   +T    + S++     TH ++ +QR + L+   L NN   G +
Sbjct: 595 VKVGGR---ITISTDSSIT----KASLIRYGTATHTVNTDQRRIPLT---LTNN---GGN 641

Query: 494 EVVVAAPPTSALAPPGYYLLSVVNQ-GIPS 522
                 P  S +A PGY++L V+N  G+PS
Sbjct: 642 SYSFQVPSDSGVALPGYWMLFVMNSAGVPS 671

Catalyzes the sterospecific oxidation of primary alcohols to the corresponding aldehydes. The biologically relevant substrate of the enzyme is not known as the enzyme exhibits broad substrate specificity from small alcohols through sugars to oligo- and polysaccharides (By similarity).
Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 9

>sp|P0CS93|GAOA_GIBZA Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 31/270 (11%)

Query: 256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
           Y  V  ++L  GGS        ++     NA         TSPN  +    +   RT   
Sbjct: 430 YDAVKGKILTFGGSPDY-----QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 484

Query: 316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
            V+LP+G   I  G   G         P   P +Y    PE   F +  P  I R+YHS+
Sbjct: 485 SVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIY---VPEQDTFYKQNPNSIVRVYHSI 539

Query: 376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYA--ALRPAILEDQSDK 433
           + LLPDG+VF GG     G             + FTP YL       A RP I    +  
Sbjct: 540 SLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS 594

Query: 434 AATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVD 493
               G     R+  S   +I+  + S++     TH ++ +QR + L+   L NN   G +
Sbjct: 595 VKVGG-----RITISTDSSIS--KASLIRYGTATHTVNTDQRRIPLT---LTNN---GGN 641

Query: 494 EVVVAAPPTSALAPPGYYLLSVVNQ-GIPS 522
                 P  S +A PGY++L V+N  G+PS
Sbjct: 642 SYSFQVPSDSGVALPGYWMLFVMNSAGVPS 671

Catalyzes the sterospecific oxidation of primary alcohols to the corresponding aldehydes. The biologically relevant substrate of the enzyme is not known as the enzyme exhibits broad substrate specificity from small alcohols through sugars to oligo- and polysaccharides.

Gibberella zeae (taxid: 5518)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
255546401	613	Galactose oxidase precursor, putative [R	0.901	0.779	0.450	1e-129
224119812	609	predicted protein [Populus trichocarpa]	0.9	0.783	0.442	1e-128
224142169	522	predicted protein [Populus trichocarpa]	0.9	0.913	0.440	1e-127
15220398	615	glyoxal oxidase-related protein [Arabido	0.918	0.791	0.433	1e-126
362799981	645	glyoxal oxidase 5 [Linum grandiflorum]	0.9	0.739	0.451	1e-125
225445162	647	PREDICTED: galactose oxidase-like [Vitis	0.907	0.743	0.437	1e-125
297841411	599	hypothetical protein ARALYDRAFT_475824 [	0.918	0.813	0.431	1e-125
297812139	596	hypothetical protein ARALYDRAFT_488852 [	0.898	0.798	0.444	1e-125
297738786	900	unnamed protein product [Vitis vinifera]	0.905	0.533	0.437	1e-125
19310437	594	AT5g19580/T20D1_100 [Arabidopsis thalian	0.892	0.796	0.447	1e-124

>gi|255546401|ref|XP_002514260.1| Galactose oxidase precursor, putative [Ricinus communis] gi|223546716|gb|EEF48214.1| Galactose oxidase precursor, putative [Ricinus communis]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/542 (45%), Positives = 339/542 (62%), Gaps = 64/542 (11%)

Query: 32  GFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTN 91
           G+ G WEL+SQN+G+SAMH  LLPKTD++ ++DA++W IS+L LP ++  C     ++ N
Sbjct: 93  GYKGDWELVSQNSGVSAMHAILLPKTDKVLMYDATIWKISKLPLPNDE--C-----RVLN 145

Query: 92  QTA--EDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLV--------------- 134
           +T   +DCWCHS+ +D   + +  L++ +DTWCSSGGL  +G LV               
Sbjct: 146 KTTGDKDCWCHSVLFDIKTSELTPLELHTDTWCSSGGLDVNGNLVSTGGYQGGANTVRYL 205

Query: 135 -------------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFP 169
                                     L DG ++V GGRDAFSYEY+P E +SN    A P
Sbjct: 206 STCVGCNWREYPTALADRRWYSTQATLPDGGYIVVGGRDAFSYEYIPAEGKSN----AKP 261

Query: 170 FLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFP 229
           + F   DFL +  +P+     ENNLYPFV+L  DGNV++FAN+RSV+ +PK+NKI+REFP
Sbjct: 262 YFF---DFLRQTSDPE-----ENNLYPFVFLSTDGNVFIFANSRSVLLNPKSNKIVREFP 313

Query: 230 QLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDD 289
            LPGG R+YPA+    LLP+ L  +  + + +EVLICGGS     Y   E+  F  AL D
Sbjct: 314 VLPGGHRNYPASAMCALLPIKLHAENQQEIPSEVLICGGSAHRDAYSKAEKHIFYTALQD 373

Query: 290 CARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPML 349
           CAR+ +T+ +P WK E MP PR M D ++LP G+VL++NGA  G+ GW  A +P+  P+L
Sbjct: 374 CARIKITAKDPVWKRELMPTPRIMGDMMILPTGDVLLLNGAKRGASGWGFAREPNFTPVL 433

Query: 350 YRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEK 409
           Y P A  G RF ELAP++I RMYHS + +LPDGKV VGGSN N+GY   A +PTELR+EK
Sbjct: 434 YNPRAKRGLRFTELAPSNIARMYHSSSAVLPDGKVLVGGSNTNNGYIYDAIYPTELRIEK 493

Query: 410 FTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVK-SSEPLTINYVQVSIVAPPFVTH 468
           ++PPYL    AA RP I+         YG    +++K     +    ++V++ AP F TH
Sbjct: 494 YSPPYLNANLAAKRPEIVVVLP--VLFYGGEFMVQIKLKGLKVEQQDLKVTMYAPAFTTH 551

Query: 469 GISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFH 528
           G+SMNQR++ L + ++++N   G+  +   APP+S +APPGYY+LSVV QG+PS S W  
Sbjct: 552 GVSMNQRLIDLGLKKVESNPLLGLHSIASVAPPSSTIAPPGYYMLSVVYQGVPSVSKWVQ 611

Query: 529 LK 530
           +K
Sbjct: 612 IK 613

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119812|ref|XP_002331167.1| predicted protein [Populus trichocarpa] gi|222873250|gb|EEF10381.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/540 (44%), Positives = 328/540 (60%), Gaps = 63/540 (11%)

Query: 35  GSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTA 94
           G WEL++ N+G+SAMH  LLP+ +++ ++DA++W  S ++LP         H +L NQT 
Sbjct: 89  GRWELVTVNSGVSAMHAILLPRVNKVLMYDATIWKKSEIRLPTG-------HCRLLNQTT 141

Query: 95  --EDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLV------------------ 134
             +DC+CHS+ +D    A+  L++ +DTWCSSGGLS DG LV                  
Sbjct: 142 GEKDCYCHSVLFDVATTALTPLQLHTDTWCSSGGLSVDGNLVGTGGFQGGANTVRYLETC 201

Query: 135 ----------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLF 172
                                  L DG F+V GGR+AFSYEY+P E +SN  +  F FL 
Sbjct: 202 KGCNWREFPTALADRRWYSTQAELPDGGFIVVGGREAFSYEYIPREGDSNAKSYFFDFLK 261

Query: 173 ETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLP 232
           +T D            R ENNLYPFV+L  DGN+++FANNR+V+ +PK+NK++REFP LP
Sbjct: 262 KTSD------------RDENNLYPFVHLSTDGNLFIFANNRAVLLNPKSNKVVREFPALP 309

Query: 233 GGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCAR 292
           GG RSYPATG S LLP+ L       + AEVL+CGGS  +  Y       F  AL DC R
Sbjct: 310 GGHRSYPATGMSALLPIKLHSKNNDVIPAEVLVCGGSGHKDAYTQASRDIFYTALQDCGR 369

Query: 293 MVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP 352
           + +T   P WK E MP+PR M D V+LP G++L++NGA  G  GW  A +P+L P +Y P
Sbjct: 370 IRITDKKPVWKREIMPSPRVMGDMVILPTGDILMLNGAKRGCSGWGFAREPNLAPAIYYP 429

Query: 353 NAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTP 412
            A  G RF +L  + IPRMYHS + +LPDGKV V GSN N+GY   A FPTELR+EKF+P
Sbjct: 430 KAKLGNRFKQLKASIIPRMYHSSSVVLPDGKVLVAGSNTNNGYVYNAMFPTELRVEKFSP 489

Query: 413 PYLAPEYAALRPAILEDQSDKAATYGKWVYLRVKSSE-PLTINYVQVSIVAPPFVTHGIS 471
           PYL P  A  RP I+ D++ +  +Y +   L++KS+   +    ++V++ AP F THG+S
Sbjct: 490 PYLDPSVAVHRPVIVTDKAPEKISYDETFQLQIKSTAVKVEKKDIKVTMYAPAFTTHGVS 549

Query: 472 MNQRMLFLSVIE-LKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK 530
           MNQR+L L + + +  N   G+  + V +PP+  +APPGYY+L VV+QG+PS S W  +K
Sbjct: 550 MNQRLLDLGLEDVIAENAFLGIHTITVVSPPSGKVAPPGYYMLFVVHQGVPSVSTWVQIK 609

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142169|ref|XP_002324431.1| predicted protein [Populus trichocarpa] gi|222865865|gb|EEF02996.1| predicted protein [Populus trichocarpa]

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/540 (44%), Positives = 321/540 (59%), Gaps = 63/540 (11%)

Query: 35  GSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTA 94
           GSWEL+S N+G+SAMH  LLPK D++ ++DA++W  S ++LP         H +L N+T 
Sbjct: 2   GSWELVSVNSGVSAMHAILLPKVDKVLMYDATIWKKSEIRLPAG-------HCRLLNKTT 54

Query: 95  --EDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLV------------------ 134
             +DC+CHS+ +D    A+  L++ +DTWCSSGGLS DG LV                  
Sbjct: 55  GEKDCFCHSVLFDIATTAITPLQLHTDTWCSSGGLSIDGNLVGTGGFQGGAKTVRYLETC 114

Query: 135 ----------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLF 172
                                  L DG F+V GGRDAFSYEY+P E  SN  +  F FL 
Sbjct: 115 KGCNWREFPTALADRRWYSTQAELPDGGFIVVGGRDAFSYEYIPREGRSNAKSYFFDFLK 174

Query: 173 ETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLP 232
           +T D            + ENNLYPFV+L  DGN+++FAN+R+V+ +PK+NK++RE P LP
Sbjct: 175 KTSD------------KDENNLYPFVHLSTDGNLFIFANDRAVLLNPKSNKVVRELPALP 222

Query: 233 GGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCAR 292
           GG R+YPATG SVLLP+ L     + + AEVL+CGGS     Y    +  F  AL+DC R
Sbjct: 223 GGHRNYPATGMSVLLPIKLHSKNNRVIPAEVLVCGGSGHRDAYTQASKDIFYTALEDCGR 282

Query: 293 MVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP 352
           + +T   P WK E MP+PR M D ++LP G+VL++NGA  G  GW  A +P+  P +Y P
Sbjct: 283 IRITDKKPAWKREVMPSPRVMGDMMILPTGDVLLLNGAQRGCSGWGFAREPNFGPAIYHP 342

Query: 353 NAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTP 412
            A  G RF EL  + IPRMYHS + +LPDGK+ V GSN N+GY   A FPTELR+EKF P
Sbjct: 343 KAKLGNRFRELKASTIPRMYHSSSVVLPDGKILVAGSNTNNGYVYNAMFPTELRVEKFLP 402

Query: 413 PYLAPEYAALRPAILEDQSDKAATYGKWVYLRVKSSE-PLTINYVQVSIVAPPFVTHGIS 471
           PYL P     RP I+ D++     Y     L +KS    +    +QV++ AP F THG+S
Sbjct: 403 PYLDPSVIGRRPVIIADKAPNQIGYNNLFKLYIKSKALKVEKKDIQVTMYAPAFTTHGVS 462

Query: 472 MNQRMLFLSVIE-LKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK 530
           MNQR+L L + + +  N   G+  +   +PP+  +APPGYY+L VV+QG+PS S W  +K
Sbjct: 463 MNQRLLDLGLEDVITENAFLGIHAITAVSPPSGRVAPPGYYMLFVVHQGVPSVSSWVQIK 522

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220398|ref|NP_176897.1| glyoxal oxidase-related protein [Arabidopsis thaliana] gi|9828629|gb|AAG00252.1|AC002130_17 F1N21.11 [Arabidopsis thaliana] gi|27754377|gb|AAO22637.1| putative glyoxal oxidase (glx1) [Arabidopsis thaliana] gi|28394059|gb|AAO42437.1| putative glyoxal oxidase (glx1) [Arabidopsis thaliana] gi|332196502|gb|AEE34623.1| glyoxal oxidase-related protein [Arabidopsis thaliana]

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/545 (43%), Positives = 329/545 (60%), Gaps = 58/545 (10%)

Query: 26  AAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWH 85
           AA P   + G WEL  +N+G+SAMH  L+P  +++  +DA++W IS+++LP    PC   
Sbjct: 87  AAGPEMNWPGQWELFMKNSGVSAMHAILMPLINKVQFYDATIWRISQIKLP-PGVPC--- 142

Query: 86  HNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLV----------- 134
           H     +   DCW HS+  D N   +K L + +DTWCSSGGL+ +G LV           
Sbjct: 143 HVFDAKKNKVDCWAHSVLVDINTGDIKPLALTTDTWCSSGGLTVNGTLVSTGGFQGGANT 202

Query: 135 -----------------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAA 165
                                         L DG+F+V GGRDA +YEY+  E ++NK  
Sbjct: 203 ARYLSTCENCVWIEYPKALAARRWYSTQATLPDGTFIVVGGRDALNYEYILPEGQNNKK- 261

Query: 166 IAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKII 225
                L+++Q  L +  +P+     ENNLYPFV+L  DGN+++FANNRS++  PK NK++
Sbjct: 262 -----LYDSQ-LLRQTDDPE-----ENNLYPFVWLNTDGNLFIFANNRSILLSPKTNKVL 310

Query: 226 REFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVN 285
           +EFPQLPGGAR+YP + +S LLP+ L       + A+VL+CGG+ ++  +  E  K +  
Sbjct: 311 KEFPQLPGGARNYPGSASSALLPIRLYVQNPAIIPADVLVCGGAKQDAYFRAERLKIYDW 370

Query: 286 ALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSL 345
           AL DCAR+ + S  P WK E MP  R M+D V+LPNGE+LIINGA  GS GWH A +P+ 
Sbjct: 371 ALKDCARLNINSAKPVWKTETMPTSRVMSDTVILPNGEILIINGAKRGSSGWHLAKEPNF 430

Query: 346 KPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTEL 405
            P+LY+PN P GQRF ELAP+ IPR+YHS+A  LPDGKV VGGSN N+GY    ++PTEL
Sbjct: 431 APLLYKPNKPLGQRFKELAPSTIPRVYHSIAIALPDGKVLVGGSNTNNGYQFNVEYPTEL 490

Query: 406 RLEKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVK-SSEPLTINYVQVSIVAPP 464
           R+EKF+PPYL P  A +RP I+   + K   YG+   ++++   + +    V V+++AP 
Sbjct: 491 RIEKFSPPYLDPALANMRPRIVNTATPKQIKYGQMFDVKIELKQQNVAKENVMVTMLAPS 550

Query: 465 FVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHS 524
           F TH +SMN R+L L +  +K NV     ++   APP+  LAPPGYYLL  V  G+PS  
Sbjct: 551 FTTHSVSMNMRLLMLGINNVK-NVGGDNHQIQAVAPPSGKLAPPGYYLLFAVYNGVPSVG 609

Query: 525 IWFHL 529
            W  +
Sbjct: 610 EWIQI 614

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|362799981|dbj|BAL41454.1| glyoxal oxidase 5 [Linum grandiflorum]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/549 (45%), Positives = 335/549 (61%), Gaps = 72/549 (13%)

Query: 32  GFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTN 91
           GF G WEL S+N+G+SAMH+ LLPK +++ ++DA++W IS + LP     C      L  
Sbjct: 119 GFNGQWELFSKNSGVSAMHSILLPKVEKVIMYDATIWRISNIMLPNGV--C----RILDP 172

Query: 92  QTAE-DCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLV---------------- 134
           +T E DCW HS+ +D N + +  L++ +DTWCSSGGL+ +G  V                
Sbjct: 173 KTGEKDCWAHSVLFDANVDNLIPLELNTDTWCSSGGLTLEGNFVSTGGFQGGANTVRYLD 232

Query: 135 ------------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPF 170
                                    L+DG F+V GGRDA S+EY+P E + N   I F F
Sbjct: 233 SCQGCTWREYPTALAAPRWYSTQAQLADGRFIVVGGRDAQSFEYIPPEGQRNAQPIFFDF 292

Query: 171 LFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQ 230
           L +T D       P+     ENNLYPFV+L  D NV++FANNRSV+ +P  N I++EFP 
Sbjct: 293 LKQTLD-------PE-----ENNLYPFVFLSTDSNVFIFANNRSVLLNPATNTIVKEFPV 340

Query: 231 LPGGARSYPATGTSVLLPLYLPRDTYKP--VDAEVLICGGSVREGLYLGEEEKRFVNALD 288
           LPGG R+YPA+G SV+LP+ L     +P  + AEVL+CGGS     Y   E+  F   L+
Sbjct: 341 LPGGHRNYPASGMSVILPIRLHSQGPEPPIIPAEVLVCGGSAHIDSYSKAEKGTFYECLE 400

Query: 289 DCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPM 348
           DC R+ +T PNP WK E MP+ R M D +LLP+GEVLIINGA  G+ GW  A +P+  P+
Sbjct: 401 DCGRIRITDPNPVWKRELMPSARIMGDMMLLPSGEVLIINGAKRGASGWGFAREPNFTPL 460

Query: 349 LYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGY-FEFAKFPTELRL 407
           LY P A  G+RF ELAP+ IPRMYHS + +LPDG+V + GSN N+GY +E A FPTELR+
Sbjct: 461 LYTPKAKLGKRFRELAPSAIPRMYHSSSVVLPDGRVMIAGSNTNNGYIYEKAMFPTELRV 520

Query: 408 EKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVKS-SEPLTINYVQVSIVAPPFV 466
           EKF+PPYL P  AA RP I+   +     Y   + L+VK+ + P   N +++++  P F 
Sbjct: 521 EKFSPPYLDPALAANRPEIMNGAAVAQIAYKAKITLQVKAIAGPDMQNNMKITMGVPGFS 580

Query: 467 THGISMNQRMLFLSVIELKNNVAP-----GVDEVVVAAPPTSALAPPGYYLLSVVNQGIP 521
           THG++MNQR++ L +    + V P     GV ++V  APP SA+AP GYY+LSVV QGIP
Sbjct: 581 THGVTMNQRLIVLGL----DTVTPTPGQAGVFDIVAGAPPNSAVAPTGYYMLSVVYQGIP 636

Query: 522 SHSIWFHLK 530
           S ++W  LK
Sbjct: 637 SKAVWVQLK 645

Source: Linum grandiflorum

Species: Linum grandiflorum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445162|ref|XP_002280698.1| PREDICTED: galactose oxidase-like [Vitis vinifera]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/540 (43%), Positives = 329/540 (60%), Gaps = 59/540 (10%)

Query: 33  FLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQ 92
           + G WE++S+++G+SAMH  L+PK ++  +FDA+V+  S +QLP+ ++ C    +  TN+
Sbjct: 125 YKGEWEVVSKDSGVSAMHLILMPKNNKAIMFDATVFGPSNIQLPKSEK-CRPVPDSKTNE 183

Query: 93  TAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLV------------------ 134
              DCW H++ YD     V+ LKV ++ WCSSGGL+ADG LV                  
Sbjct: 184 I--DCWAHAVEYDIETAEVRPLKVLTNPWCSSGGLAADGTLVGTGGWKEGGKSVRLLSGC 241

Query: 135 ----------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLF 172
                                 +L DGSF + GGR  FSYE++  +  SN+ +  FPFL 
Sbjct: 242 ATCDWEDSPNALSGYRWYATQQILPDGSFFLLGGRRVFSYEFLSAQGISNRKSFNFPFLR 301

Query: 173 ETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLP 232
           ET D  E            NNLYPFV+L PDGN+++ ANNRS++  P + +IIREFP LP
Sbjct: 302 ETTDLAE------------NNLYPFVHLSPDGNLFILANNRSILFSPTSGQIIREFPVLP 349

Query: 233 GGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCAR 292
           GG+R+YPA+G S LLPL L     K + AEVL+CGG+  E   L E+ K F+ AL DC R
Sbjct: 350 GGSRNYPASGMSALLPLNLQGGNAKDIQAEVLVCGGAKPEAFNLAEK-KTFLPALKDCGR 408

Query: 293 MVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP 352
           + +T+P   WKIE MP+ R M D +LLP G+VL++NGA+ G+  W  A+ P+  P+LY P
Sbjct: 409 IQITNPAAAWKIETMPSRRVMGDMLLLPTGDVLMLNGAEQGTSAWGAAEVPNFTPVLYSP 468

Query: 353 NAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGY-FEFAKFPTELRLEKFT 411
             P  +RF EL PT I RMYHS + +LPDGK+ V GSN N GY F+  K+PTE+R+EKF+
Sbjct: 469 QKPMNERFTELEPTSIARMYHSSSAVLPDGKILVAGSNTNPGYNFKGVKYPTEMRVEKFS 528

Query: 412 PPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVK-SSEPLTINYVQVSIVAPPFVTHGI 470
           PPYL P   A +P IL+D S     YG+   +++  S   +    ++V++ APPF THG 
Sbjct: 529 PPYLDPSLQAHKPVILQDFSQATLRYGQKFLVKINLSGWDVETTDIKVTMYAPPFTTHGF 588

Query: 471 SMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK 530
           SMNQR+L L +  + N    G   +V  APP+  +APPGYYLL VV++G+PS  +W H++
Sbjct: 589 SMNQRLLILGMNNV-NQSFLGFYNIVATAPPSGTIAPPGYYLLYVVHRGVPSTGMWVHIQ 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841411|ref|XP_002888587.1| hypothetical protein ARALYDRAFT_475824 [Arabidopsis lyrata subsp. lyrata] gi|297334428|gb|EFH64846.1| hypothetical protein ARALYDRAFT_475824 [Arabidopsis lyrata subsp. lyrata]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/545 (43%), Positives = 326/545 (59%), Gaps = 58/545 (10%)

Query: 26  AAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWH 85
           AA P   + G WEL  +N+G+SAMH  L+P  +++  +DA++W IS+++LP    P    
Sbjct: 71  AAGPEMNWPGQWELFMKNSGVSAMHAILMPLINKVQFYDATIWRISQIKLP----PGVAC 126

Query: 86  HNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLV----------- 134
           H         DCW HS+  D N   +K L + +DTWCSSGGL+ +G LV           
Sbjct: 127 HVYDQKANKIDCWAHSVLVDINTGNIKPLALTTDTWCSSGGLTVNGTLVSTGGFQGGANT 186

Query: 135 -----------------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAA 165
                                         L DG+F+V GGRDA +YEY+  E ++NK  
Sbjct: 187 ARYLSTCENCVWIEYPKALAARRWYSTQATLPDGTFIVVGGRDALNYEYILPEGQNNKK- 245

Query: 166 IAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKII 225
                L+++Q  L +  +P+     ENNLYPFV+L  DGN+++FANNRS++  PK NK++
Sbjct: 246 -----LYDSQ-LLRQTDDPE-----ENNLYPFVWLNTDGNLFIFANNRSILLSPKTNKVL 294

Query: 226 REFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVN 285
           +EFPQLPGGAR+YP + +S LLP+ L       + A+VLICGG+ ++  +  E+ K +  
Sbjct: 295 KEFPQLPGGARNYPGSASSALLPIRLYVQNPAVIPADVLICGGAKQDAYFRAEKLKIYDW 354

Query: 286 ALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSL 345
           AL DCAR+ + S  P WK E MP  R M+D V+LPNGE+LIINGA  GS GWH A  P+ 
Sbjct: 355 ALKDCARISLNSAKPVWKTETMPMSRVMSDTVILPNGEILIINGAKRGSSGWHLAKDPNF 414

Query: 346 KPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTEL 405
            P+LY PN P G+RF ELAP+ IPR+YHS+A  LPDGKV VGGSN NDGY    ++PTEL
Sbjct: 415 APLLYTPNKPLGKRFKELAPSTIPRVYHSIAIALPDGKVLVGGSNTNDGYQYNVEYPTEL 474

Query: 406 RLEKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVK-SSEPLTINYVQVSIVAPP 464
           R+EKF+PPYL P  A +RP I+   + K   YG+   ++++   + +    V V+++AP 
Sbjct: 475 RIEKFSPPYLDPALANMRPRIVNTATPKQIKYGQMFDVKIELKQQNVAKENVMVTMLAPS 534

Query: 465 FVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHS 524
           F TH +SMN R+L L +  +K NV     ++   APP+  +APPGYYLL  V  G+PS  
Sbjct: 535 FTTHSVSMNMRLLMLGINNVK-NVGGDNHQIQAVAPPSGKVAPPGYYLLFAVYNGVPSVG 593

Query: 525 IWFHL 529
            W  +
Sbjct: 594 EWIQI 598

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812139|ref|XP_002873953.1| hypothetical protein ARALYDRAFT_488852 [Arabidopsis lyrata subsp. lyrata] gi|297319790|gb|EFH50212.1| hypothetical protein ARALYDRAFT_488852 [Arabidopsis lyrata subsp. lyrata]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/536 (44%), Positives = 324/536 (60%), Gaps = 60/536 (11%)

Query: 35  GSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTA 94
           G WEL  +N+G+S MH  L+P  +++  +DA++W IS+++LP    PC   + K TN+  
Sbjct: 79  GKWELFLENSGVSGMHAILMPVINKVQYYDATIWRISKIKLP-PGVPCHVVNAK-TNRI- 135

Query: 95  EDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLV-------------------- 134
            DCW HSI  D N  A+K L + +DTWCSSGGL+ +G LV                    
Sbjct: 136 -DCWAHSILMDVNTGALKPLALSTDTWCSSGGLTVNGTLVSTGGYGGGANTARYLSSCEN 194

Query: 135 --------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFET 174
                                L DG F V GGRDA +YEY+P E ++N+       L +T
Sbjct: 195 CKWEEYPQALAAKRWYSTQATLPDGKFFVIGGRDALNYEYIPEEGQNNRKLYDSLLLRQT 254

Query: 175 QDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGG 234
            D       P+     ENNLYPFV+L  DGN+++FANNRS++  PK N++I+EFPQLPGG
Sbjct: 255 DD-------PE-----ENNLYPFVWLNTDGNLFIFANNRSILLSPKTNQVIKEFPQLPGG 302

Query: 235 ARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMV 294
           AR+YP +G+S LLP+ L     K + AEVL+CGGS ++  Y    ++ F  AL DCAR+ 
Sbjct: 303 ARNYPGSGSSALLPIQLYVKNPKVIPAEVLVCGGS-KQDAYYKAGKRVFEPALQDCARIR 361

Query: 295 VTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA 354
           + S  P WK E MP PR M+D V+LPNG++L++NGA  G  GW     P+  P+LY+P+A
Sbjct: 362 INSAKPRWKTEMMPTPRIMSDTVILPNGDILLVNGAKRGCSGWGYGKDPAFAPLLYKPHA 421

Query: 355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPY 414
           P G+RF EL P+ IPRMYHS A +LPDGKV VGGSN NDGY    +FPTELR+EKF+PPY
Sbjct: 422 PRGKRFRELKPSTIPRMYHSTAIILPDGKVLVGGSNTNDGYKYNVEFPTELRVEKFSPPY 481

Query: 415 LAPEYAALRPAILEDQSDKAATYGKWVYLRVK-SSEPLTINYVQVSIVAPPFVTHGISMN 473
           L P  A +RP I+   + K   YG++  ++V    +  T   ++V+++AP F TH ISMN
Sbjct: 482 LDPALANIRPKIVTTGTPKQIKYGQFFNVKVDLKQKGATKQNLKVTMLAPAFTTHSISMN 541

Query: 474 QRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHL 529
            RML L V  +K   A G D +   APP   +APPGYYL+  +++G+PS   W  +
Sbjct: 542 MRMLILGVANVKPAGA-GYD-IQAVAPPNGNIAPPGYYLIFAIHKGVPSTGEWIQI 595

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738786|emb|CBI28031.3| unnamed protein product [Vitis vinifera]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/539 (43%), Positives = 328/539 (60%), Gaps = 59/539 (10%)

Query: 33  FLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQ 92
           + G WE++S+++G+SAMH  L+PK ++  +FDA+V+  S +QLP+ ++ C    +  TN+
Sbjct: 101 YKGEWEVVSKDSGVSAMHLILMPKNNKAIMFDATVFGPSNIQLPKSEK-CRPVPDSKTNE 159

Query: 93  TAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLV------------------ 134
              DCW H++ YD     V+ LKV ++ WCSSGGL+ADG LV                  
Sbjct: 160 I--DCWAHAVEYDIETAEVRPLKVLTNPWCSSGGLAADGTLVGTGGWKEGGKSVRLLSGC 217

Query: 135 ----------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLF 172
                                 +L DGSF + GGR  FSYE++  +  SN+ +  FPFL 
Sbjct: 218 ATCDWEDSPNALSGYRWYATQQILPDGSFFLLGGRRVFSYEFLSAQGISNRKSFNFPFLR 277

Query: 173 ETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLP 232
           ET D  E            NNLYPFV+L PDGN+++ ANNRS++  P + +IIREFP LP
Sbjct: 278 ETTDLAE------------NNLYPFVHLSPDGNLFILANNRSILFSPTSGQIIREFPVLP 325

Query: 233 GGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCAR 292
           GG+R+YPA+G S LLPL L     K + AEVL+CGG+  E   L E+ K F+ AL DC R
Sbjct: 326 GGSRNYPASGMSALLPLNLQGGNAKDIQAEVLVCGGAKPEAFNLAEK-KTFLPALKDCGR 384

Query: 293 MVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP 352
           + +T+P   WKIE MP+ R M D +LLP G+VL++NGA+ G+  W  A+ P+  P+LY P
Sbjct: 385 IQITNPAAAWKIETMPSRRVMGDMLLLPTGDVLMLNGAEQGTSAWGAAEVPNFTPVLYSP 444

Query: 353 NAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGY-FEFAKFPTELRLEKFT 411
             P  +RF EL PT I RMYHS + +LPDGK+ V GSN N GY F+  K+PTE+R+EKF+
Sbjct: 445 QKPMNERFTELEPTSIARMYHSSSAVLPDGKILVAGSNTNPGYNFKGVKYPTEMRVEKFS 504

Query: 412 PPYLAPEYAALRPAILEDQSDKAATYGKWVYLRVK-SSEPLTINYVQVSIVAPPFVTHGI 470
           PPYL P   A +P IL+D S     YG+   +++  S   +    ++V++ APPF THG 
Sbjct: 505 PPYLDPSLQAHKPVILQDFSQATLRYGQKFLVKINLSGWDVETTDIKVTMYAPPFTTHGF 564

Query: 471 SMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHL 529
           SMNQR+L L +  + N    G   +V  APP+  +APPGYYLL VV++G+PS  +W H+
Sbjct: 565 SMNQRLLILGMNNV-NQSFLGFYNIVATAPPSGTIAPPGYYLLYVVHRGVPSTGMWVHI 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19310437|gb|AAL84955.1| AT5g19580/T20D1_100 [Arabidopsis thaliana] gi|24797058|gb|AAN64541.1| At5g19580/T20D1_100 [Arabidopsis thaliana] gi|110742638|dbj|BAE99231.1| hypothetical protein [Arabidopsis thaliana]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/539 (44%), Positives = 322/539 (59%), Gaps = 66/539 (12%)

Query: 35  GSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTA 94
           G WEL  +N+G+S MH  L+P  +++  +DA++W IS+++LP    PC     K TN+  
Sbjct: 77  GKWELFLENSGVSGMHAILMPVINKVQYYDATIWRISKIKLP-PGVPCHVVDAK-TNKV- 133

Query: 95  EDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLV-------------------- 134
            DCW HSI  D N  A+K L + +DTWCSSGGL+ +G LV                    
Sbjct: 134 -DCWAHSILMDVNTGALKPLGLSTDTWCSSGGLTVNGTLVSTGGYGGGANTARYLSSCEN 192

Query: 135 --------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFET 174
                                L DG F V GGRDA +YEY+P E ++N+       L +T
Sbjct: 193 CKWEEYPQALAAKRWYSTQATLPDGKFFVIGGRDALNYEYIPEEGQNNRKLFDSLLLRQT 252

Query: 175 QDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGG 234
            D       PK     ENNLYPFV+L  DGN+++FANNRS++  PK N++I+EFPQLPGG
Sbjct: 253 DD-------PK-----ENNLYPFVWLNTDGNLFIFANNRSILLSPKTNQVIKEFPQLPGG 300

Query: 235 ARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMV 294
           AR+YP +G+S LLP+ L     K + AEVL+CGGS ++  Y    +K +  AL DCAR+ 
Sbjct: 301 ARNYPGSGSSALLPIQLYVKNPKVIPAEVLVCGGS-KQDAYYKAGKKIYEPALQDCARIR 359

Query: 295 VTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA 354
           + S  P WK E MP PR M+D V+LPNG++L++NGA  G  GW     P+  P+LY+P+A
Sbjct: 360 INSAKPRWKTEMMPTPRIMSDTVILPNGDILLVNGAKRGCSGWGYGKDPAFAPLLYKPHA 419

Query: 355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPY 414
             G+RF +L PT IPRMYHS A +LPDGKV VGGSN NDGY    +FPTELR+EKF+PPY
Sbjct: 420 ARGKRFRQLKPTTIPRMYHSSAIILPDGKVLVGGSNTNDGYKYNVEFPTELRVEKFSPPY 479

Query: 415 LAPEYAALRPAILEDQSDKAATYGKWVYLRVKSSEP-LTINYVQVSIVAPPFVTHGISMN 473
           L P  A +RP I+   + K   YG++  ++V   E   T   ++V+++AP F TH ISMN
Sbjct: 480 LDPALANIRPKIVTTGTPKQVKYGQFFNVKVDLKEKGATKGNLKVTMLAPAFTTHSISMN 539

Query: 474 QRMLFLSVIELKNNVAP---GVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHL 529
            RML L V    NNV P   G D +   APP   +APPGYYL+  + +G+PS   W  +
Sbjct: 540 MRMLILGV----NNVKPAGAGYD-IQAVAPPNGNIAPPGYYLIFAIYKGVPSTGEWIQV 593

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
TAIR|locus:2180791	594	AT5G19580 "AT5G19580" [Arabido	0.711	0.634	0.486	1.5e-121
TAIR|locus:2035408	548	AT1G19900 "AT1G19900" [Arabido	0.713	0.689	0.441	2.9e-99
TAIR|locus:2019564	615	GLOX1 "AT1G67290" [Arabidopsis	0.718	0.619	0.481	1.7e-98
TAIR|locus:2005664	547	AT1G75620 "AT1G75620" [Arabido	0.622	0.603	0.463	2.6e-96
TAIR|locus:2076696	547	AT3G57620 "AT3G57620" [Arabido	0.620	0.601	0.426	2.1e-88
TAIR|locus:2084480	545	AT3G53950 "AT3G53950" [Arabido	0.611	0.594	0.428	5.1e-83
UNIPROTKB|G4MQZ0	669	MGG_02368 "Galactose oxidase"	0.4	0.316	0.285	2.8e-07

TAIR|locus:2180791 AT5G19580 "AT5G19580" [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 1.5e-121, Sum P(2) = 1.5e-121
 Identities = 193/397 (48%), Positives = 260/397 (65%)

Query:   136 LSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLY 195
             L DG F V GGRDA +YEY+P E ++N+       LF++   L +  +P+     ENNLY
Sbjct:   214 LPDGKFFVIGGRDALNYEYIPEEGQNNRK------LFDSL-LLRQTDDPE-----ENNLY 261

Query:   196 PFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDT 255
             PFV+L  DGN+++FANNRS++  PK N++I+EFPQLPGGAR+YP +G+S LLP+ L    
Sbjct:   262 PFVWLNTDGNLFIFANNRSILLSPKTNQVIKEFPQLPGGARNYPGSGSSALLPIQLYVKN 321

Query:   256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
              K + AEVL+CGGS ++  Y   + K +  AL DCAR+ + S  P WK E MP PR M+D
Sbjct:   322 PKVIPAEVLVCGGSKQDAYYKAGK-KIYEPALQDCARIRINSAKPRWKTEMMPTPRIMSD 380

Query:   316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
              V+LPNG++L++NGA  G  GW     P+  P+LY+P+A  G+RF +L PT IPRMYHS 
Sbjct:   381 TVILPNGDILLVNGAKRGCSGWGYGKDPAFAPLLYKPHAARGKRFRQLKPTTIPRMYHSS 440

Query:   376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQSDKAA 435
             A +LPDGKV VGGSN NDGY    +FPTELR+EKF+PPYL P  A +RP I+   + K  
Sbjct:   441 AIILPDGKVLVGGSNTNDGYKYNVEFPTELRVEKFSPPYLDPALANIRPKIVTTGTPKQV 500

Query:   436 TYGKWVYLRVKSSEP-LTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAP-GVD 493
              YG++  ++V   E   T   ++V+++AP F TH ISMN RML L V    NNV P G  
Sbjct:   501 KYGQFFNVKVDLKEKGATKGNLKVTMLAPAFTTHSISMNMRMLILGV----NNVKPAGAG 556

Query:   494 -EVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHL 529
              ++   APP   +APPGYYL+  + +G+PS   W  +
Sbjct:   557 YDIQAVAPPNGNIAPPGYYLIFAIYKGVPSTGEWIQV 593

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2035408 AT1G19900 "AT1G19900" [Arabidopsis thaliana (taxid:3702)]

 Score = 821 (294.1 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
 Identities = 176/399 (44%), Positives = 240/399 (60%)

Query:   135 MLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNL 194
             +L DG  +V GG+  F+YE+ P  K +N   +A PFL ET D        +G+   ENNL
Sbjct:   168 ILPDGKQIVMGGQGQFNYEFFP--KTTNPNVVALPFLAETHD--------QGQ---ENNL 214

Query:   195 YPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGG-ARSYPATGTSVLLPLY-LP 252
             YPFV++  DGN+++FANNR+++ D   N +++ FP +PGG  R+YP+TG++VLLPL  L 
Sbjct:   215 YPFVFMNTDGNLFMFANNRAILLDYVKNTVVKTFPAIPGGDPRNYPSTGSAVLLPLKNLE 274

Query:   253 RDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRT 312
              D    V+ EVL+CGG+ + G Y    +K FV ALD CAR+ +    PEW +EKMP  R 
Sbjct:   275 ADN---VETEVLVCGGAPK-GSYNLARKKTFVKALDTCARIKINDAKPEWAVEKMPHARV 330

Query:   313 MADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMY 372
             M D + LPNG+VL+ING   G+  W     P L P LY P  P G RF  L PT IPRMY
Sbjct:   331 MGDMIPLPNGDVLLINGGSFGTAAWELGRTPVLAPDLYHPENPVGSRFESLRPTTIPRMY 390

Query:   373 HSVANLLPDGKVFVGGSNDNDGY-FEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQS 431
             HS A LL DG+V VGGSN +  Y +    FPTEL LE F+P YL  E++ LRP I+  + 
Sbjct:   391 HSAAILLRDGRVLVGGSNPHAFYNYTGVLFPTELSLEAFSPVYLQREFSNLRPKIISPEP 450

Query:   432 DKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPG 491
                  YG  + L+   +  +T    +V++V P F TH  +MNQR+L L  ++        
Sbjct:   451 QSMIKYGTNLKLKFSVTGEVTTP-AKVTMVFPTFTTHSFAMNQRVLVLDNVKFTRKGKSP 509

Query:   492 VDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK 530
             + EV V  P ++ +A PGYY++ VVNQ IPS  +W  L+
Sbjct:   510 MYEVQVRTPRSANIAWPGYYMIFVVNQDIPSEGVWVKLE 548

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019564 GLOX1 "AT1G67290" [Arabidopsis thaliana (taxid:3702)]

 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 190/395 (48%), Positives = 262/395 (66%)

Query:   136 LSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLY 195
             L DG+F+V GGRDA +YEY+  E ++NK       L+++Q  L +  +P+     ENNLY
Sbjct:   233 LPDGTFIVVGGRDALNYEYILPEGQNNKK------LYDSQ-LLRQTDDPE-----ENNLY 280

Query:   196 PFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDT 255
             PFV+L  DGN+++FANNRS++  PK NK+++EFPQLPGGAR+YP + +S LLP+ L    
Sbjct:   281 PFVWLNTDGNLFIFANNRSILLSPKTNKVLKEFPQLPGGARNYPGSASSALLPIRLYVQN 340

Query:   256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
                + A+VL+CGG+ ++  +  E  K +  AL DCAR+ + S  P WK E MP  R M+D
Sbjct:   341 PAIIPADVLVCGGAKQDAYFRAERLKIYDWALKDCARLNINSAKPVWKTETMPTSRVMSD 400

Query:   316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
              V+LPNGE+LIINGA  GS GWH A +P+  P+LY+PN P GQRF ELAP+ IPR+YHS+
Sbjct:   401 TVILPNGEILIINGAKRGSSGWHLAKEPNFAPLLYKPNKPLGQRFKELAPSTIPRVYHSI 460

Query:   376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQSDKAA 435
             A  LPDGKV VGGSN N+GY    ++PTELR+EKF+PPYL P  A +RP I+   + K  
Sbjct:   461 AIALPDGKVLVGGSNTNNGYQFNVEYPTELRIEKFSPPYLDPALANMRPRIVNTATPKQI 520

Query:   436 TYGKWVYLRVK-SSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDE 494
              YG+   ++++   + +    V V+++AP F TH +SMN R+L L +  +KN V     +
Sbjct:   521 KYGQMFDVKIELKQQNVAKENVMVTMLAPSFTTHSVSMNMRLLMLGINNVKN-VGGDNHQ 579

Query:   495 VVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHL 529
             +   APP+  LAPPGYYLL  V  G+PS   W  +
Sbjct:   580 IQAVAPPSGKLAPPGYYLLFAVYNGVPSVGEWIQI 614

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2005664 AT1G75620 "AT1G75620" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
 Identities = 159/343 (46%), Positives = 221/343 (64%)

Query:   191 ENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGG-ARSYPATGTSVLLPL 249
             ENNLYPFV+L  DGN+++FANNR+++ D   N ++R +P++PGG  RSYP+TG++VLLP+
Sbjct:   215 ENNLYPFVFLNTDGNLFIFANNRAILLDYSTNTVVRTYPEIPGGDPRSYPSTGSAVLLPI 274

Query:   250 YLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPA 309
                    K +  EVL+CGG+ + G Y       FV ALD CAR+ +   NP+W +EKMP 
Sbjct:   275 -------KNLVLEVLVCGGAPK-GSYNLSWRNTFVKALDTCARININDVNPQWIVEKMPR 326

Query:   310 PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIP 369
              R M D +LLP+G VL+ING   G+  W    +P L P LY P+ P G RF    P+ IP
Sbjct:   327 ARVMGDMMLLPDGNVLLINGGSSGTAAWELGREPVLHPDLYHPDKPVGSRFEVQNPSTIP 386

Query:   370 RMYHSVANLLPDGKVFVGGSNDNDGY-FEFAKFPTELRLEKFTPPYLAPEYAALRPAILE 428
             RMYHS+A LL DG++ VGGSN +  Y F    FPTELRLE F+P YL  +Y++LRP+I++
Sbjct:   387 RMYHSIATLLRDGRILVGGSNPHAFYNFTGVLFPTELRLEAFSPSYLDTKYSSLRPSIVD 446

Query:   429 DQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLS-VIELKNN 487
              +      YG+ + LR   S  +  + V+V+++ P F TH  SM+QR+L L  VI  K  
Sbjct:   447 PRPQTTVNYGRVLRLRFIVSGRVK-SPVKVTMLFPSFTTHSFSMHQRLLVLDHVISFKLG 505

Query:   488 VAPGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK 530
             ++  + EV V  P ++ LAPPGYY++ VVNQ IPS  +W  L+
Sbjct:   506 ISK-IYEVRVRTPSSAILAPPGYYMVFVVNQDIPSEGLWVRLQ 547

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2076696 AT3G57620 "AT3G57620" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
 Identities = 146/342 (42%), Positives = 215/342 (62%)

Query:   191 ENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGG-ARSYPATGTSVLLPL 249
             ENNLYPF++LLPDGN++VFAN RS+V D K N+I++EFP++PGG  R+YP++G+S+L PL
Sbjct:   217 ENNLYPFIHLLPDGNLFVFANTRSIVFDYKKNRIVKEFPEIPGGDPRNYPSSGSSILFPL 276

Query:   250 YLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPA 309
                 D    V+ E+++CGGS + G   G     F  A   C R+ ++  +P W++E MP 
Sbjct:   277 DDTNDAN--VEVEIMVCGGSPKGGFSRG-----FTRATSTCGRLKLSDQSPSWEMETMPL 329

Query:   310 PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIP 369
             PR M D +LLP G+V+I+NGA  G+ GW  A  P ++P++Y+P       F  ++    P
Sbjct:   330 PRVMGDMLLLPTGDVIIVNGAGAGTAGWEKARDPIIQPVIYQPF---DHLFTVMSTPSRP 386

Query:   370 RMYHSVANLLPDGKVFVGGSNDNDGY-FEFAKFPTELRLEKFTPPYLAPEYAALRPAILE 428
             RMYHS A LLPDG+V VGGSN +  Y F   ++PT+L LE ++PPYL      +RP IL 
Sbjct:   387 RMYHSSAILLPDGRVLVGGSNPHVYYNFTNVEYPTDLSLEAYSPPYLFFTSDPIRPKILL 446

Query:   429 DQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNV 488
               SDK  +Y +   +    ++ LT++ + V IVAP F TH  +MNQRM+ L ++ +  + 
Sbjct:   447 T-SDKVLSYKRLFNVDFSIAQFLTVDLLSVRIVAPSFTTHSFAMNQRMVILKLLSVTRDQ 505

Query:   489 APGVDEVVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHLK 530
                   V    P T+ +APPGYY++ +V+ GIPS + W  ++
Sbjct:   506 LTNSYRVSALGPSTAEIAPPGYYMIFLVHAGIPSSAAWVQIE 547

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2084480 AT3G53950 "AT3G53950" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
 Identities = 147/343 (42%), Positives = 208/343 (60%)

Query:   192 NNLYPFVYLLPD---GNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLP 248
             +NLYP+V+LLPD   GN+++FAN+R+V +D + N +++E+P L GG R+YP+ G+S +L 
Sbjct:   215 DNLYPYVHLLPDDDGGNLFIFANSRAVKYDHRINAVVKEYPPLDGGPRNYPSGGSSAMLA 274

Query:   249 LYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMP 308
             +     T     AE+LICGG+ + G +          A   C R+V T+ +P W  E+MP
Sbjct:   275 IQGDFTT-----AEILICGGA-QSGAFTARAID--APAHGTCGRIVATAADPVWVTEEMP 326

Query:   309 APRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDI 368
               R M D V LP GE+LIINGA  GS G+     P L P+LYRP+ P G RF  L P  +
Sbjct:   327 FGRIMGDMVNLPTGEILIINGAQAGSQGFEMGSDPCLYPLLYRPDQPIGLRFMTLNPGTV 386

Query:   369 PRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILE 428
             PRMYHS ANLLPDG++ + GSN +  Y   A+FPTELR+E F+P YL+P+ A LRP I E
Sbjct:   387 PRMYHSTANLLPDGRILLAGSNPHYFYKFNAEFPTELRIEAFSPEYLSPDRANLRPEIQE 446

Query:   429 DQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNV 488
                 +   YG+   + V    P+ +  +Q++  + PF TH  S  QR++ L+V     +V
Sbjct:   447 --IPQIIRYGEVFDVFVTVPLPV-VGIIQMNWGSAPFATHSFSQGQRLVKLTVAP---SV 500

Query:   489 APGVDE--VVVAAPPTSALAPPGYYLLSVVNQGIPSHSIWFHL 529
               GV    +   APP  A++PPGYY+   VNQG+PS + W  +
Sbjct:   501 PDGVGRYRIQCTAPPNGAVSPPGYYMAFAVNQGVPSIARWIRI 543

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MQZ0 MGG_02368 "Galactose oxidase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 154 (59.3 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
 Identities = 68/238 (28%), Positives = 106/238 (44%)

Query:   297 SPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPE 356
             SP    ++  M   R  A+ V+LP+G+V++  G    S  +  A+   +  M      P 
Sbjct:   423 SPAVVERVTDMAFQRGFANAVVLPDGKVIVTGGMKR-SIVFSDANAVFVAEMF----DPA 477

Query:   357 GQRFAELAPTDIPRMYHSVANLLPDGKVFVGG------SNDNDGYFEFAKFPTELRLEKF 410
              + + +LA    PR YHSV+ LLPD  VFVGG      +       +  K       E  
Sbjct:   478 TKAWTQLAAAQKPRNYHSVSILLPDATVFVGGGGLCYVATIKGSTAKCNKSVDHADGEIL 537

Query:   411 TPPYL--APEYAALRPAI--LEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFV 466
             +PPYL  A   AA RP I  L+  S +A     +    ++ +     NY + S+V    V
Sbjct:   538 SPPYLFNADGTAAARPVIGDLDKTSIRAGDSLTFAVTGIQGAA--AANY-KFSLVRMGSV 594

Query:   467 THGISMNQRMLFLSVIELKNNVAPGVD-EVVVAAPPTSALAPPGY-YLLSVVNQGIPS 522
             TH ++ +QR + L       + + G D +  V  P  + +  PG+ YL ++   G PS
Sbjct:   595 THSVNTDQRRVPLE------DFSVGADGKFTVRTPADTGVMIPGHWYLFAIAPNGTPS 646

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.157.80.1 hypothetical protein (522 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	530
pfam07250	243	pfam07250, Glyoxal_oxid_N, Glyoxal oxidase N-termi	7e-69
cd02851	103	cd02851, E_set_GO_C, C-terminal Early set domain a	2e-23
pfam09118	97	pfam09118, DUF1929, Domain of unknown function (DU	2e-20

>gnl|CDD|219349 pfam07250, Glyoxal_oxid_N, Glyoxal oxidase N-terminus

 Score =  221 bits (564), Expect = 7e-69
 Identities = 101/264 (38%), Positives = 140/264 (53%), Gaps = 65/264 (24%)

Query: 49  MHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAE-DCWCHSIFYDYN 107
           MH QLL   +++ +FD + +  S + LP  +  C        +   + DC  HS+ YD  
Sbjct: 1   MHMQLL-HNNKVIMFDRTNFGPSNISLPPGR--C---RPDPGDAPLKIDCSAHSVLYDVA 54

Query: 108 KNAVKALKVQSDTWCSSGGLSADGRLV--------------------------------- 134
            N ++ L VQ+DTWCSSG L +DG LV                                 
Sbjct: 55  TNTIRPLTVQTDTWCSSGALLSDGTLVQTGGDGDGERKVRYFSPCDSNDTCDWIEFPATL 114

Query: 135 ----------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNP 184
                     +L DGSF++ GGR AF+YE+ P +K  N  A A  FL ET+D        
Sbjct: 115 AARRWYATNQILPDGSFIIIGGRRAFNYEFFP-KKGQNPRASALRFLRETED-------- 165

Query: 185 KGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTS 244
                 ENNLYPFV+LLPDGN+++FANNRS++ D + N +++EFPQ+PGG R+YP++G+S
Sbjct: 166 ----SQENNLYPFVFLLPDGNLFIFANNRSILFDYRKNTVVKEFPQIPGGPRNYPSSGSS 221

Query: 245 VLLPLYLPRDTYKPVDAEVLICGG 268
           VLLPL         + AEVL+CGG
Sbjct: 222 VLLPLDDRNP--DNLTAEVLVCGG 243

This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. Length = 243

>gnl|CDD|199882 cd02851, E_set_GO_C, C-terminal Early set domain associated with the catalytic domain of galactose oxidase

 Score = 94.2 bits (235), Expect = 2e-23
 Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 11/112 (9%)

Query: 419 YAALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLF 478
           + A RP I    + K   YG+     V  S P     V+V++V P FVTH  +M QR++ 
Sbjct: 2   FGAPRPTITS--APKTVGYGQ--TFTVTVSGPGG-GIVRVTLVRPGFVTHSFNMGQRLVK 56

Query: 479 LSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVN-QGIPSHSIWFHL 529
           L V       + G   V V APP + +APPGYY+L VVN  G+PS + W  +
Sbjct: 57  LPV-----TGSGGDYTVTVTAPPNANVAPPGYYMLFVVNADGVPSVAKWVRV 103

E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. Length = 103

>gnl|CDD|220118 pfam09118, DUF1929, Domain of unknown function (DUF1929)

 Score = 85.7 bits (213), Expect = 2e-20
 Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 423 RPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVI 482
           RP I    S     YG    + V  +       V+VS+V P  VTH  +M+QR + L   
Sbjct: 1   RPVISLAPSS--VKYGGTFTVTVTLASAGI---VKVSLVRPGSVTHSFNMDQRRVPLPFT 55

Query: 483 ELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVN-QGIPSHSIWFHL 529
                         V APP + +APPGYY+L VVN  G+PS + W  +
Sbjct: 56  SSGGT------TYTVTAPPNANVAPPGYYMLFVVNADGVPSVAKWVRV 97

Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	530
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
cd02851	101	Galactose_oxidase_C_term Galactose oxidase C-termi	100.0
PF09118	98	DUF1929: Domain of unknown function (DUF1929); Int	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.97
PHA02713	557	hypothetical protein; Provisional	99.97
PHA02713	557	hypothetical protein; Provisional	99.96
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.95
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.94
PHA02790	480	Kelch-like protein; Provisional	99.94
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.93
PLN02153	341	epithiospecifier protein	99.93
PHA02790	480	Kelch-like protein; Provisional	99.92
PHA03098	534	kelch-like protein; Provisional	99.92
PLN02153	341	epithiospecifier protein	99.9
PHA03098	534	kelch-like protein; Provisional	99.9
PLN02193	470	nitrile-specifier protein	99.89
PLN02193	470	nitrile-specifier protein	99.89
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.87
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.85
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.84
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.58
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.27
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.16
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	99.16
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.15
KOG1230	521	consensus Protein containing repeated kelch motifs	99.04
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	98.83
KOG1230	521	consensus Protein containing repeated kelch motifs	98.78
PF13964	50	Kelch_6: Kelch motif	98.73
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	98.55
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	98.55
smart00612	47	Kelch Kelch domain.	98.37
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	98.36
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.33
PF13964	50	Kelch_6: Kelch motif	98.1
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	97.97
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	97.85
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	97.85
PF13415	49	Kelch_3: Galactose oxidase, central domain	97.77
smart00612	47	Kelch Kelch domain.	97.76
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	97.64
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	97.35
PLN02772	398	guanylate kinase	97.21
PF13415	49	Kelch_3: Galactose oxidase, central domain	97.06
PRK13684	334	Ycf48-like protein; Provisional	96.64
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.42
PLN02772	398	guanylate kinase	95.31
PF13854	42	Kelch_5: Kelch motif	94.33
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	94.14
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	91.95
KOG0286	343	consensus G-protein beta subunit [General function	91.69
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	91.06
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	89.95
PF13854	42	Kelch_5: Kelch motif	89.76
KOG0310	487	consensus Conserved WD40 repeat-containing protein	88.75
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	87.82
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	86.41
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	84.26
KOG0310	487	consensus Conserved WD40 repeat-containing protein	83.59
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	82.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	82.14
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	81.66

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=100.00  E-value=3.3e-42  Score=339.47  Aligned_cols=198  Identities=44%  Similarity=0.791  Sum_probs=178.8

Q ss_pred             eeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccCCcccccceec
Q 042680           49 MHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLS  128 (530)
Q Consensus        49 ~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l  128 (530)
                      |||+|+ ++|||++||+++.++|++.||+|  +||.+  +.++..+.||.+|+.+||+.+++++++...++.||+++++|
T Consensus         1 mh~~~~-~~~~v~~~d~t~~g~s~~~~~~~--~c~~~--~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L   75 (243)
T PF07250_consen    1 MHMALL-HNNKVIMFDRTNFGPSNISLPDG--RCRDN--PEDNALKFDGPAHSVEYDPNTNTFRPLTVQTDTFCSGGAFL   75 (243)
T ss_pred             CeEeEc-cCCEEEEEeCCCcccccccCCCC--ccccC--ccccccccCceEEEEEEecCCCcEEeccCCCCCcccCcCCC
Confidence            899999 99999999999999999999999  99986  77788899999999999999999999999999999999999


Q ss_pred             cCCcEE-------------------------------------------EccCCeEEEeccCCCCcEEEEcCCCCCCCce
Q 042680          129 ADGRLV-------------------------------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAA  165 (530)
Q Consensus       129 ~dG~l~-------------------------------------------~L~dG~v~VvGG~~~~s~E~yP~~~~~~~~~  165 (530)
                      +||+++                                           +|+||+|+|+||+.++++|+||+... ....
T Consensus        76 ~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~-~~~~  154 (243)
T PF07250_consen   76 PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGP-GPGP  154 (243)
T ss_pred             CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccC-CCCc
Confidence            999999                                           99999999999999999999976421 2345


Q ss_pred             EEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEe
Q 042680          166 IAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSV  245 (530)
Q Consensus       166 ~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~sv  245 (530)
                      ..+++|.++.+.            .++|+|||++++|||+||+++++.+++||+++|++++.+|+||++.|+||.+|++|
T Consensus       155 ~~~~~l~~~~~~------------~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssv  222 (243)
T PF07250_consen  155 VTLPFLSQTSDT------------LPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSV  222 (243)
T ss_pred             eeeecchhhhcc------------CccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCCCceecCCCcceE
Confidence            566777655432            46899999999999999999999999999999999889999999999999999999


Q ss_pred             eccC--CCCCCCCCCCCcEEEEecC
Q 042680          246 LLPL--YLPRDTYKPVDAEVLICGG  268 (530)
Q Consensus       246 mlpl--~~~~~~~~~~~gkI~v~GG  268 (530)
                      ||||  ++   .+ .+..+|+||||
T Consensus       223 mLPl~~~~---~~-~~~~evlvCGG  243 (243)
T PF07250_consen  223 MLPLTDTP---PN-NYTAEVLVCGG  243 (243)
T ss_pred             EecCccCC---CC-CCCeEEEEeCC
Confidence            9999  54   23 36999999998

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=8.3e-33  Score=305.24  Aligned_cols=255  Identities=22%  Similarity=0.304  Sum_probs=203.9

Q ss_pred             CCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccCCcccccceeccCCcEEE
Q 042680           56 KTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVM  135 (530)
Q Consensus        56 ~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~  135 (530)
                      ..++++++||....        +                 ++....++|||.+++|..++.|+.++|..++.        
T Consensus       283 ~~~~l~~vGG~~~~--------~-----------------~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~--------  329 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQ--------G-----------------QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVA--------  329 (571)
T ss_pred             CCCeEEEECCCCCC--------C-----------------cccceeEEecCCcCcEeecCCCCcccccccEE--------
Confidence            36889999987531        1                 13467899999999999999999888876664        


Q ss_pred             ccCCeEEEeccCC-C----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEE
Q 042680          136 LSDGSFLVYGGRD-A----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVF  209 (530)
Q Consensus       136 L~dG~v~VvGG~~-~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~  209 (530)
                      ..+|+|||+||++ +    .++|+| |.++   +|....||..           +|..         +.++..+|+||++
T Consensus       330 ~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~---~W~~~a~M~~-----------~R~~---------~~v~~l~g~iYav  386 (571)
T KOG4441|consen  330 VLNGKLYVVGGYDSGSDRLSSVERYDPRTN---QWTPVAPMNT-----------KRSD---------FGVAVLDGKLYAV  386 (571)
T ss_pred             EECCEEEEEccccCCCcccceEEEecCCCC---ceeccCCccC-----------cccc---------ceeEEECCEEEEE
Confidence            3499999999999 3    479999 9986   5666566642           2323         4578889999999


Q ss_pred             eCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccc
Q 042680          210 ANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKR  282 (530)
Q Consensus       210 Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~  282 (530)
                      ||.       ++|+|||.+|+|. .+++|+. .|.    +.++..           .+++||++||.+...         
T Consensus       387 GG~dg~~~l~svE~YDp~~~~W~-~va~m~~-~r~----~~gv~~-----------~~g~iYi~GG~~~~~---------  440 (571)
T KOG4441|consen  387 GGFDGEKSLNSVECYDPVTNKWT-PVAPMLT-RRS----GHGVAV-----------LGGKLYIIGGGDGSS---------  440 (571)
T ss_pred             eccccccccccEEEecCCCCccc-ccCCCCc-cee----eeEEEE-----------ECCEEEEEcCcCCCc---------
Confidence            994       6999999999999 8998874 333    333311           589999999986321         


Q ss_pred             ccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE
Q 042680          283 FVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA  361 (530)
Q Consensus       283 ~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt  361 (530)
                        ..++++++|||.  +++|+.. +|+.+|.++.++++ +|+||++||.+ |       .....++|.|||.++   +|+
T Consensus       441 --~~l~sve~YDP~--t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~-~-------~~~~~~VE~ydp~~~---~W~  504 (571)
T KOG4441|consen  441 --NCLNSVECYDPE--TNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFD-G-------TSALSSVERYDPETN---QWT  504 (571)
T ss_pred             --cccceEEEEcCC--CCceeecCCcccccccceEEEE-CCEEEEECCcc-C-------CCccceEEEEcCCCC---cee
Confidence              267899999998  5999998 99999999998887 99999999987 2       223557999999999   999


Q ss_pred             EecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCCCc
Q 042680          362 ELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPE  418 (530)
Q Consensus       362 ~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~~~  418 (530)
                      .+++|+.+|..++++++  ++++|+.||....      .+  ..+||+|+|..-.+.
T Consensus       505 ~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~------~~--l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  505 MVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN------NN--LNTVECYDPETDTWT  551 (571)
T ss_pred             EcccCccccccccEEEE--CCEEEEEecccCc------cc--cceeEEcCCCCCcee
Confidence            99999999999999988  9999999995432      23  467999999886543

>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain

Probab=100.00  E-value=3.2e-33  Score=239.50  Aligned_cols=99  Identities=26%  Similarity=0.392  Sum_probs=88.8

Q ss_pred             cccCCCCceeccCCC-CccccCCEEEEEEEcCCCCccceEEEEEEcCCccccCCCCCcceEEeeeeeeecccCCCceEEE
Q 042680          418 EYAALRPAILEDQSD-KAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVV  496 (530)
Q Consensus       418 ~~~~~RP~i~~~~~p-~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~  496 (530)
                      |+++.||+|+++  | .+++||++|+|+++.      .+.+|+|+|++|+||++|||||+|+|+++..     . +.+++
T Consensus         1 g~~a~RP~I~~~--p~~~i~yG~~f~v~~~~------~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~~-----~-~~~~~   66 (101)
T cd02851           1 GTLASRPVITSA--STQTAKVGDTITVSTDS------PISSASLVRYGSATHTVNTDQRRIPLTLFSV-----G-GNSYS   66 (101)
T ss_pred             CCCCCCCeeccC--CccccccCCEEEEEEec------cceEEEEEecccccccccCCccEEEeeeEec-----C-CCEEE
Confidence            356789999999  8 899999999999873      3799999999999999999999999999752     2 35778


Q ss_pred             EEcCCCCCcCCCcceEEEEE-cCCcCcccEEEEeC
Q 042680          497 VAAPPTSALAPPGYYLLSVV-NQGIPSHSIWFHLK  530 (530)
Q Consensus       497 v~~P~~~~v~ppG~ymlfv~-~~gvPS~~~~v~i~  530 (530)
                      +++|+|++|+|||||||||+ ++||||+|+||+|+
T Consensus        67 v~~P~n~~vaPPGyYmLFvv~~~GvPS~a~wV~i~  101 (101)
T cd02851          67 VQIPSDPGVALPGYYMLFVMNSAGVPSVAKTIRIT  101 (101)
T ss_pred             EEcCCCCCcCCCcCeEEEEECCCCcccccEEEEeC
Confidence            88899999999999999999 59999999999985

Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core

Probab=100.00  E-value=3.7e-33  Score=239.05  Aligned_cols=97  Identities=41%  Similarity=0.730  Sum_probs=68.4

Q ss_pred             CCceeccCCCCccccCCEEEEEEEcCCCCccceEEEEEEcCCccccCCCCCcceEEeeeeeeecccCCCceEEEEEcCCC
Q 042680          423 RPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPT  502 (530)
Q Consensus       423 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~  502 (530)
                      ||+|+++  |..+.||++|+|+++.++  ..++.+|+|+|++|+|||+|||||+|+|++...      +++++++++|+|
T Consensus         1 RP~i~~~--p~~i~yg~~~tv~~~~~~--~~~~~~v~L~~~~~~THs~~~~QR~v~L~~~~~------~~~~~~v~~P~~   70 (98)
T PF09118_consen    1 RPVITSA--PTTIKYGQTFTVTVTVPS--AASIVKVSLVRPGFVTHSFNMGQRMVELEFVSG------GGNTVTVTAPPN   70 (98)
T ss_dssp             ---EEES---SEEETT-EEEEEE--SS-----ESEEEEEE--EEETTB-SS-EEEEE-EEEE------SSSEEEEE--S-
T ss_pred             CCccccC--CCeEecCCEEEEEEECCC--ccceEEEEEEeCCcccccccCCCCEEeeeeecC------CCCEEEEECCCC
Confidence            9999998  999999999999998653  347899999999999999999999999999542      257999999999


Q ss_pred             CCcCCCcceEEEEEc-CCcCcccEEEEe
Q 042680          503 SALAPPGYYLLSVVN-QGIPSHSIWFHL  529 (530)
Q Consensus       503 ~~v~ppG~ymlfv~~-~gvPS~~~~v~i  529 (530)
                      ++|+|||||||||++ +||||+|+||+|
T Consensus        71 ~~vaPPG~YmLFvv~~~GvPS~a~wV~v   98 (98)
T PF09118_consen   71 PNVAPPGYYMLFVVNDDGVPSVAKWVQV   98 (98)
T ss_dssp             TTTS-SEEEEEEEEETTS-B---EEEEE
T ss_pred             CccCCCcCEEEEEEcCCCcccccEEEEC
Confidence            999999999999999 999999999997

The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.97  E-value=1.5e-30  Score=287.35  Aligned_cols=254  Identities=20%  Similarity=0.266  Sum_probs=206.0

Q ss_pred             cccCCCCCCCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEE
Q 042680           25 AAAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFY  104 (530)
Q Consensus        25 ~~~~~~~~~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~y  104 (530)
                      ...+.+++..++|..+..+..-+..|.+.. .+|+||++||.+.+         .                +...++++|
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~---------~----------------~~l~~ve~Y  354 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSG---------S----------------DRLSSVERY  354 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCC---------C----------------cccceEEEe
Confidence            344567777899999988887788777777 79999999998631         0                135789999


Q ss_pred             eCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccC
Q 042680          105 DYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLE  179 (530)
Q Consensus       105 Dp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~  179 (530)
                      ||.+|+|+++++|..++|..++.       ++ +|.||++||+++    .++|+| |.++   +|....||+..      
T Consensus       355 D~~~~~W~~~a~M~~~R~~~~v~-------~l-~g~iYavGG~dg~~~l~svE~YDp~~~---~W~~va~m~~~------  417 (571)
T KOG4441|consen  355 DPRTNQWTPVAPMNTKRSDFGVA-------VL-DGKLYAVGGFDGEKSLNSVECYDPVTN---KWTPVAPMLTR------  417 (571)
T ss_pred             cCCCCceeccCCccCccccceeE-------EE-CCEEEEEeccccccccccEEEecCCCC---cccccCCCCcc------
Confidence            99999999999999888876664       34 999999999986    479999 9985   78888888541      


Q ss_pred             CCCCCCccccccCCccceEEEecCCcEEEEeC--------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCC
Q 042680          180 RPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN--------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYL  251 (530)
Q Consensus       180 ~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg--------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~  251 (530)
                             |       +-|..+..+|+||++||        +++|+|||.+|+|. .+|+|+. +|.+  .|.++      
T Consensus       418 -------r-------~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~-~~~~M~~-~R~~--~g~a~------  473 (571)
T KOG4441|consen  418 -------R-------SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT-LIAPMNT-RRSG--FGVAV------  473 (571)
T ss_pred             -------e-------eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee-ecCCccc-cccc--ceEEE------
Confidence                   1       34778889999999999        47999999999999 8999984 4554  24443      


Q ss_pred             CCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCC
Q 042680          252 PRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGA  330 (530)
Q Consensus       252 ~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~  330 (530)
                             ++++||++||.+. .           ..+.++|+|||.  +++|+.. +|+.+|..+..+++ +|++|++||.
T Consensus       474 -------~~~~iYvvGG~~~-~-----------~~~~~VE~ydp~--~~~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~  531 (571)
T KOG4441|consen  474 -------LNGKIYVVGGFDG-T-----------SALSSVERYDPE--TNQWTMVAPMTSPRSAVGVVVL-GGKLYAVGGF  531 (571)
T ss_pred             -------ECCEEEEECCccC-C-----------CccceEEEEcCC--CCceeEcccCccccccccEEEE-CCEEEEEecc
Confidence                   4899999999873 1           246779999998  5999998 89999988887776 9999999996


Q ss_pred             CCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCccccccee
Q 042680          331 DLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANL  378 (530)
Q Consensus       331 ~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~L  378 (530)
                      . |.       .-+.++|+|||.++   +|+...++...|...+++++
T Consensus       532 ~-~~-------~~l~~ve~ydp~~d---~W~~~~~~~~~~~~~~~~~~  568 (571)
T KOG4441|consen  532 D-GN-------NNLNTVECYDPETD---TWTEVTEPESGRGGAGVAVI  568 (571)
T ss_pred             c-Cc-------cccceeEEcCCCCC---ceeeCCCccccccCcceEEe
Confidence            5 22       23668999999999   99999888888887776665

>PHA02713 hypothetical protein; Provisional

Probab=99.97  E-value=6.7e-30  Score=282.33  Aligned_cols=244  Identities=12%  Similarity=0.125  Sum_probs=180.5

Q ss_pred             eEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC-----CcEEEE-cCCCCCCCceEEeccccc
Q 042680          100 HSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA-----FSYEYV-PVEKESNKAAIAFPFLFE  173 (530)
Q Consensus       100 ~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~-----~s~E~y-P~~~~~~~~~~~~p~l~~  173 (530)
                      ..++|||.+++|+.++.|+..++..+++       ++ ||+|||+||.+.     .++|+| |.++   .|....||. .
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a-------~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n---~W~~~~~m~-~  340 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASA-------IV-DNEIIIAGGYNFNNPSLNKVYKINIENK---IHVELPPMI-K  340 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEE-------EE-CCEEEEEcCCCCCCCccceEEEEECCCC---eEeeCCCCc-c
Confidence            4689999999999999998666543332       23 999999999741     468999 9875   465554443 1


Q ss_pred             cccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEee
Q 042680          174 TQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVL  246 (530)
Q Consensus       174 t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svm  246 (530)
                                +|.         -+..+..+|+||++||.       ++|+|||.+|+|. .+++||. +|..  .++++ 
T Consensus       341 ----------~R~---------~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~-~~~~mp~-~r~~--~~~~~-  396 (557)
T PHA02713        341 ----------NRC---------RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK-MLPDMPI-ALSS--YGMCV-  396 (557)
T ss_pred             ----------hhh---------ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE-ECCCCCc-cccc--ccEEE-
Confidence                      121         24567889999999994       5899999999999 7999984 4443  12333 


Q ss_pred             ccCCCCCCCCCCCCcEEEEecCccCCc-ccccc-cc----ccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeee
Q 042680          247 LPLYLPRDTYKPVDAEVLICGGSVREG-LYLGE-EE----KRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLL  319 (530)
Q Consensus       247 lpl~~~~~~~~~~~gkI~v~GG~~~~~-~~~~~-~~----~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvL  319 (530)
                                  ++++||++||.+... +.... .+    ......++++++|||.  +++|+.. +|+.+|..++++++
T Consensus       397 ------------~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~--td~W~~v~~m~~~r~~~~~~~~  462 (557)
T PHA02713        397 ------------LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV--NNIWETLPNFWTGTIRPGVVSH  462 (557)
T ss_pred             ------------ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCC--CCeEeecCCCCcccccCcEEEE
Confidence                        489999999975210 00000 00    0001136789999998  4999987 99999999998887


Q ss_pred             cCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC-CCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccc
Q 042680          320 PNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA-PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEF  398 (530)
Q Consensus       320 pdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t-~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~  398 (530)
                       +|+|||+||.+ +..      .-...+|+|||++ +   +|+.+++|+.+|..|+++++  ||+|||+||...      
T Consensus       463 -~~~IYv~GG~~-~~~------~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~------  523 (557)
T PHA02713        463 -KDDIYVVCDIK-DEK------NVKTCIFRYNTNTYN---GWELITTTESRLSALHTILH--DNTIMMLHCYES------  523 (557)
T ss_pred             -CCEEEEEeCCC-CCC------ccceeEEEecCCCCC---CeeEccccCcccccceeEEE--CCEEEEEeeecc------
Confidence             99999999975 211      1123579999999 9   99999999999999999998  999999999642      


Q ss_pred             cCCCCcceEEEEcCCCCCC
Q 042680          399 AKFPTELRLEKFTPPYLAP  417 (530)
Q Consensus       399 ~~~~t~~~vE~y~Ppyl~~  417 (530)
                           ..++|+|+|..-.+
T Consensus       524 -----~~~~e~yd~~~~~W  537 (557)
T PHA02713        524 -----YMLQDTFNVYTYEW  537 (557)
T ss_pred             -----eeehhhcCcccccc
Confidence                 12689999988654

>PHA02713 hypothetical protein; Provisional

Probab=99.96  E-value=5.4e-28  Score=267.20  Aligned_cols=236  Identities=9%  Similarity=0.105  Sum_probs=177.5

Q ss_pred             CCCCCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCC
Q 042680           30 AGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKN  109 (530)
Q Consensus        30 ~~~~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~  109 (530)
                      ++...++|..+..++.-+.-|.+.. -+++||++||...+        +  .               .....++|||.++
T Consensus       277 yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~--------~--~---------------~~~~v~~Yd~~~n  330 (557)
T PHA02713        277 YNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFN--------N--P---------------SLNKVYKINIENK  330 (557)
T ss_pred             EeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCC--------C--C---------------ccceEEEEECCCC
Confidence            4556688999877666666666665 69999999996421        0  0               1356889999999


Q ss_pred             cEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCC
Q 042680          110 AVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNP  184 (530)
Q Consensus       110 ~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~  184 (530)
                      +|+.+++|+..++..+++        ..+|+|||+||.++    .++|+| |.++   +|....||..           +
T Consensus       331 ~W~~~~~m~~~R~~~~~~--------~~~g~IYviGG~~~~~~~~sve~Ydp~~~---~W~~~~~mp~-----------~  388 (557)
T PHA02713        331 IHVELPPMIKNRCRFSLA--------VIDDTIYAIGGQNGTNVERTIECYTMGDD---KWKMLPDMPI-----------A  388 (557)
T ss_pred             eEeeCCCCcchhhceeEE--------EECCEEEEECCcCCCCCCceEEEEECCCC---eEEECCCCCc-----------c
Confidence            999999998766655443        33999999999864    469999 9885   5766555532           1


Q ss_pred             CccccccCCccceEEEecCCcEEEEeCc-------------------------eEEEEeCCCCeEEEEccCCCCCCCccC
Q 042680          185 KGRFRLENNLYPFVYLLPDGNVYVFANN-------------------------RSVVHDPKANKIIREFPQLPGGARSYP  239 (530)
Q Consensus       185 ~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------------------------~~e~yDp~tn~w~~~~p~mp~~~r~yp  239 (530)
                      +.         -+..+..+|+||++||.                         ++|+|||.+|+|+ .+++|+. +|.. 
T Consensus       389 r~---------~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~-~v~~m~~-~r~~-  456 (557)
T PHA02713        389 LS---------SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE-TLPNFWT-GTIR-  456 (557)
T ss_pred             cc---------cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe-ecCCCCc-cccc-
Confidence            11         23456779999999984                         3789999999999 8999984 3443 


Q ss_pred             CCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeee
Q 042680          240 ATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVL  318 (530)
Q Consensus       240 ~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vv  318 (530)
                       .++++             .+++|||+||.+...           ...+.+|+|||.. +++|+.. +|+.+|..+++++
T Consensus       457 -~~~~~-------------~~~~IYv~GG~~~~~-----------~~~~~ve~Ydp~~-~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        457 -PGVVS-------------HKDDIYVVCDIKDEK-----------NVKTCIFRYNTNT-YNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             -CcEEE-------------ECCEEEEEeCCCCCC-----------ccceeEEEecCCC-CCCeeEccccCcccccceeEE
Confidence             23333             489999999975211           1234689999982 2699998 9999999999888


Q ss_pred             ecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCC
Q 042680          319 LPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPT  366 (530)
Q Consensus       319 LpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~  366 (530)
                      + +|+||++||.. |          ..++|+|||.++   +|+.+++-
T Consensus       511 ~-~~~iyv~Gg~~-~----------~~~~e~yd~~~~---~W~~~~~~  543 (557)
T PHA02713        511 H-DNTIMMLHCYE-S----------YMLQDTFNVYTY---EWNHICHQ  543 (557)
T ss_pred             E-CCEEEEEeeec-c----------eeehhhcCcccc---cccchhhh
Confidence            7 99999999976 2          126899999999   99988765

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.95  E-value=1.5e-26  Score=241.00  Aligned_cols=230  Identities=16%  Similarity=0.230  Sum_probs=156.1

Q ss_pred             EEEEeC--CCCcEEEccccC-CcccccceeccCCcEEEccCCeEEEeccCCC----------CcEEEE-cCCCCCCCceE
Q 042680          101 SIFYDY--NKNAVKALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----------FSYEYV-PVEKESNKAAI  166 (530)
Q Consensus       101 ~~~yDp--~t~~w~~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----------~s~E~y-P~~~~~~~~~~  166 (530)
                      .+.||+  .+++|+.++.|+ ..++..+++        ..||+|||+||.+.          .++|+| |.++   +|..
T Consensus        31 ~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~--------~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~---~W~~   99 (346)
T TIGR03547        31 WYKLDLKKPSKGWQKIADFPGGPRNQAVAA--------AIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN---SWQK   99 (346)
T ss_pred             eEEEECCCCCCCceECCCCCCCCcccceEE--------EECCEEEEEeCCCCCCCCCcceecccEEEEECCCC---EEec
Confidence            457774  678999999987 455543332        33999999999742          368999 8875   4553


Q ss_pred             EeccccccccccCCCCCCCccccccCCccceEEE-ecCCcEEEEeCc---------------------------------
Q 042680          167 AFPFLFETQDFLERPGNPKGRFRLENNLYPFVYL-LPDGNVYVFANN---------------------------------  212 (530)
Q Consensus       167 ~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~l-lp~G~lfv~Gg~---------------------------------  212 (530)
                      ..+.+            ++.++       .+..+ +.+|+||++||.                                 
T Consensus       100 ~~~~~------------p~~~~-------~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T TIGR03547       100 LDTRS------------PVGLL-------GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQP  160 (346)
T ss_pred             CCCCC------------CCccc-------ceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCC
Confidence            32211            12222       23334 679999999983                                 


Q ss_pred             --------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccccc
Q 042680          213 --------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFV  284 (530)
Q Consensus       213 --------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~  284 (530)
                              ++|+|||.+|+|. .+++||..+|.    ++++..           ++++|||+||.....           
T Consensus       161 ~~~~~~~~~v~~YDp~t~~W~-~~~~~p~~~r~----~~~~~~-----------~~~~iyv~GG~~~~~-----------  213 (346)
T TIGR03547       161 PEDYFWNKNVLSYDPSTNQWR-NLGENPFLGTA----GSAIVH-----------KGNKLLLINGEIKPG-----------  213 (346)
T ss_pred             hhHcCccceEEEEECCCCcee-ECccCCCCcCC----CceEEE-----------ECCEEEEEeeeeCCC-----------
Confidence                    5799999999999 78988842333    222211           489999999974211           


Q ss_pred             ccCCcEEEEEcCCCCCcceec-CCCCccc-------cceeeeecCCeEEEEcCCCCCCC------C--ccc-CCCCCccc
Q 042680          285 NALDDCARMVVTSPNPEWKIE-KMPAPRT-------MADGVLLPNGEVLIINGADLGSG------G--WHC-ADKPSLKP  347 (530)
Q Consensus       285 ~a~~s~~~~dp~~~~~~W~~~-~M~~~R~-------~~~~vvLpdG~VlViGG~~~g~~------g--~~~-~~~p~~~~  347 (530)
                      ..+..+++|++....++|+.. +|+.+|.       .+.++++ +|+|||+||.+....      +  +.. ....+.++
T Consensus       214 ~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (346)
T TIGR03547       214 LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSS  292 (346)
T ss_pred             ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEe
Confidence            112345667764335799987 8988763       2334554 999999999752100      0  000 01113468


Q ss_pred             EEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCC
Q 042680          348 MLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDND  393 (530)
Q Consensus       348 eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~  393 (530)
                      |+|||+++   +|+.+++|+.+|.+|+++++  +|+|||+||....
T Consensus       293 e~yd~~~~---~W~~~~~lp~~~~~~~~~~~--~~~iyv~GG~~~~  333 (346)
T TIGR03547       293 EVYALDNG---KWSKVGKLPQGLAYGVSVSW--NNGVLLIGGENSG  333 (346)
T ss_pred             eEEEecCC---cccccCCCCCCceeeEEEEc--CCEEEEEeccCCC
Confidence            99999999   99999999999999887666  9999999997543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.94  E-value=2.1e-25  Score=235.64  Aligned_cols=243  Identities=16%  Similarity=0.206  Sum_probs=159.0

Q ss_pred             EEEEeCC--CCcEEEccccC-CcccccceeccCCcEEEccCCeEEEeccCCC----------CcEEEE-cCCCCCCCceE
Q 042680          101 SIFYDYN--KNAVKALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----------FSYEYV-PVEKESNKAAI  166 (530)
Q Consensus       101 ~~~yDp~--t~~w~~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----------~s~E~y-P~~~~~~~~~~  166 (530)
                      .+.||+.  +++|++++.++ ..++..+++       .+ +++|||+||...          .++|+| |.++   +|..
T Consensus        52 ~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v-------~~-~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n---~W~~  120 (376)
T PRK14131         52 WYKLDLNAPSKGWTKIAAFPGGPREQAVAA-------FI-DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN---SWQK  120 (376)
T ss_pred             EEEEECCCCCCCeEECCcCCCCCcccceEE-------EE-CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC---EEEe
Confidence            4567765  58899999885 344433322       23 999999999753          358899 8875   4554


Q ss_pred             EeccccccccccCCCCCCCccccccCCccceEEEe-cCCcEEEEeCc---------------------------------
Q 042680          167 AFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLL-PDGNVYVFANN---------------------------------  212 (530)
Q Consensus       167 ~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~ll-p~G~lfv~Gg~---------------------------------  212 (530)
                      ..+..            ++.+       +-+..++ .+|+||++||.                                 
T Consensus       121 ~~~~~------------p~~~-------~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~  181 (376)
T PRK14131        121 LDTRS------------PVGL-------AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK  181 (376)
T ss_pred             CCCCC------------CCcc-------cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence            33211            1112       1233344 79999999993                                 


Q ss_pred             --------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccccc
Q 042680          213 --------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFV  284 (530)
Q Consensus       213 --------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~  284 (530)
                              .+++|||.+|+|. .+++||..+|.    ++++..           .+++|||+||......          
T Consensus       182 ~~~~~~~~~v~~YD~~t~~W~-~~~~~p~~~~~----~~a~v~-----------~~~~iYv~GG~~~~~~----------  235 (376)
T PRK14131        182 PEDYFFNKEVLSYDPSTNQWK-NAGESPFLGTA----GSAVVI-----------KGNKLWLINGEIKPGL----------  235 (376)
T ss_pred             hhhcCcCceEEEEECCCCeee-ECCcCCCCCCC----cceEEE-----------ECCEEEEEeeeECCCc----------
Confidence                    4799999999999 78888742332    333211           4799999999642110          


Q ss_pred             ccCCcEE--EEEcCCCCCcceec-CCCCcccc-------ceeeeecCCeEEEEcCCCCCCC------C--cc-cCCCCCc
Q 042680          285 NALDDCA--RMVVTSPNPEWKIE-KMPAPRTM-------ADGVLLPNGEVLIINGADLGSG------G--WH-CADKPSL  345 (530)
Q Consensus       285 ~a~~s~~--~~dp~~~~~~W~~~-~M~~~R~~-------~~~vvLpdG~VlViGG~~~g~~------g--~~-~~~~p~~  345 (530)
                       .+..+.  +|||.  +++|+.. +|+.+|..       +.++++.+|+|||+||......      |  +. .....+.
T Consensus       236 -~~~~~~~~~~~~~--~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  312 (376)
T PRK14131        236 -RTDAVKQGKFTGN--NLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSW  312 (376)
T ss_pred             -CChhheEEEecCC--CcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCccee
Confidence             112233  34544  5899987 89988742       2223335999999999752100      0  00 0011234


Q ss_pred             ccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCC
Q 042680          346 KPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPY  414 (530)
Q Consensus       346 ~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppy  414 (530)
                      .+|+|||+++   +|+.+++|+.+|.+|+++++  +|+|||+||.....     ..  ..+|++|.|.-
T Consensus       313 ~~e~yd~~~~---~W~~~~~lp~~r~~~~av~~--~~~iyv~GG~~~~~-----~~--~~~v~~~~~~~  369 (376)
T PRK14131        313 SDEIYALVNG---KWQKVGELPQGLAYGVSVSW--NNGVLLIGGETAGG-----KA--VSDVTLLSWDG  369 (376)
T ss_pred             ehheEEecCC---cccccCcCCCCccceEEEEe--CCEEEEEcCCCCCC-----cE--eeeEEEEEEcC
Confidence            6899999999   99999999999999986666  99999999964431     11  35788888863

>PHA02790 Kelch-like protein; Provisional

Probab=99.94  E-value=8.3e-26  Score=245.91  Aligned_cols=192  Identities=12%  Similarity=0.169  Sum_probs=151.7

Q ss_pred             CCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc
Q 042680          138 DGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN  212 (530)
Q Consensus       138 dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~  212 (530)
                      ++.|||+||.+.    .++++| |.++   .|....+|..           +|..         +..+..+|+||++||.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~---~W~~~~~m~~-----------~r~~---------~~~v~~~~~iYviGG~  327 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISN---NWIPIPPMNS-----------PRLY---------ASGVPANNKLYVVGGL  327 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCC---EEEECCCCCc-----------hhhc---------ceEEEECCEEEEECCc
Confidence            899999999754    468999 9875   4655555421           1211         3456789999999993


Q ss_pred             ----eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCC
Q 042680          213 ----RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALD  288 (530)
Q Consensus       213 ----~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~  288 (530)
                          ++|+|||.+|+|. .+|+||. +|...  ++++             ++++||++||.+ +             ..+
T Consensus       328 ~~~~sve~ydp~~n~W~-~~~~l~~-~r~~~--~~~~-------------~~g~IYviGG~~-~-------------~~~  376 (480)
T PHA02790        328 PNPTSVERWFHGDAAWV-NMPSLLK-PRCNP--AVAS-------------INNVIYVIGGHS-E-------------TDT  376 (480)
T ss_pred             CCCCceEEEECCCCeEE-ECCCCCC-CCccc--EEEE-------------ECCEEEEecCcC-C-------------CCc
Confidence                6899999999998 8999983 45431  2232             489999999974 1             125


Q ss_pred             cEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCC
Q 042680          289 DCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD  367 (530)
Q Consensus       289 s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~  367 (530)
                      ++++|||.  +++|+.. +|+.+|..+.++++ +|+|||+||.                .|+|||+++   +|+.+++|+
T Consensus       377 ~ve~ydp~--~~~W~~~~~m~~~r~~~~~~~~-~~~IYv~GG~----------------~e~ydp~~~---~W~~~~~m~  434 (480)
T PHA02790        377 TTEYLLPN--HDQWQFGPSTYYPHYKSCALVF-GRRLFLVGRN----------------AEFYCESSN---TWTLIDDPI  434 (480)
T ss_pred             cEEEEeCC--CCEEEeCCCCCCccccceEEEE-CCEEEEECCc----------------eEEecCCCC---cEeEcCCCC
Confidence            68999998  4999998 99999999988876 9999999973                489999999   999999999


Q ss_pred             CCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCC
Q 042680          368 IPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYL  415 (530)
Q Consensus       368 ~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl  415 (530)
                      .+|..|+++++  +|+|||+||....      .+  ..++|+|+|..-
T Consensus       435 ~~r~~~~~~v~--~~~IYviGG~~~~------~~--~~~ve~Yd~~~~  472 (480)
T PHA02790        435 YPRDNPELIIV--DNKLLLIGGFYRG------SY--IDTIEVYNNRTY  472 (480)
T ss_pred             CCccccEEEEE--CCEEEEECCcCCC------cc--cceEEEEECCCC
Confidence            99999998888  9999999996432      12  246999999863

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.93  E-value=1.9e-24  Score=223.49  Aligned_cols=266  Identities=15%  Similarity=0.147  Sum_probs=178.3

Q ss_pred             cchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEe-CCCC-cEEEccccCCcc
Q 042680           44 AGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYD-YNKN-AVKALKVQSDTW  121 (530)
Q Consensus        44 ~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yD-p~t~-~w~~l~~~~~~~  121 (530)
                      -|++++-++++  ++++|++||.+..  +..+.++|              +..|+....+|+ +..+ +|+.++.|+..+
T Consensus         2 ~~~~g~~~~~~--~~~l~v~GG~~~~--~~~~~~~g--------------~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r   63 (323)
T TIGR03548         2 LGVAGCYAGII--GDYILVAGGCNFP--EDPLAEGG--------------KKKNYKGIYIAKDENSNLKWVKDGQLPYEA   63 (323)
T ss_pred             CceeeEeeeEE--CCEEEEeeccCCC--CCchhhCC--------------cEEeeeeeEEEecCCCceeEEEcccCCccc
Confidence            36778878876  8999999998642  11122221              112456666664 4433 799999998666


Q ss_pred             cccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCc---eEEeccccccccccCCCCCCCccccccCC
Q 042680          122 CSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKA---AIAFPFLFETQDFLERPGNPKGRFRLENN  193 (530)
Q Consensus       122 ~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~---~~~~p~l~~t~d~~~~~~~~~~~~~~~~~  193 (530)
                      +.++++       .+ +++|||+||.+.    .++|.| +.++   .|   |...+-|..            .+      
T Consensus        64 ~~~~~~-------~~-~~~lyviGG~~~~~~~~~v~~~d~~~~---~w~~~~~~~~~lp~------------~~------  114 (323)
T TIGR03548        64 AYGASV-------SV-ENGIYYIGGSNSSERFSSVYRITLDES---KEELICETIGNLPF------------TF------  114 (323)
T ss_pred             cceEEE-------EE-CCEEEEEcCCCCCCCceeEEEEEEcCC---ceeeeeeEcCCCCc------------Cc------
Confidence            544432       34 999999999864    468888 7654   34   233332211            11      


Q ss_pred             ccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEe
Q 042680          194 LYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLIC  266 (530)
Q Consensus       194 ~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~  266 (530)
                       .-+..++.+|+||++||.       ++++||+.+++|. .+++||..+|..   .+++.            ++++|||+
T Consensus       115 -~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~~r~~---~~~~~------------~~~~iYv~  177 (323)
T TIGR03548       115 -ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF-ELPDFPGEPRVQ---PVCVK------------LQNELYVF  177 (323)
T ss_pred             -cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee-ECCCCCCCCCCc---ceEEE------------ECCEEEEE
Confidence             125567779999999993       6899999999998 798888545543   22221            47999999


Q ss_pred             cCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCC---Ccc--ccceeeeecCCeEEEEcCCCCCCC-----
Q 042680          267 GGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMP---APR--TMADGVLLPNGEVLIINGADLGSG-----  335 (530)
Q Consensus       267 GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~---~~R--~~~~~vvLpdG~VlViGG~~~g~~-----  335 (530)
                      ||.+..             ...++++|||..  ++|+.. +|+   .+|  ..+.++++.+++|||+||.+....     
T Consensus       178 GG~~~~-------------~~~~~~~yd~~~--~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  242 (323)
T TIGR03548       178 GGGSNI-------------AYTDGYKYSPKK--NQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVI  242 (323)
T ss_pred             cCCCCc-------------cccceEEEecCC--CeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHh
Confidence            997521             123578999984  999987 663   333  334445556899999999752100     


Q ss_pred             Ccc-----------------cCCC--CCcccEEecCCCCCCCceEEecCCC-CCCcccccceecCCCeEEEcCCCCCC
Q 042680          336 GWH-----------------CADK--PSLKPMLYRPNAPEGQRFAELAPTD-IPRMYHSVANLLPDGKVFVGGSNDND  393 (530)
Q Consensus       336 g~~-----------------~~~~--p~~~~eiYDP~t~~g~~Wt~la~~~-~~R~yHS~a~LLpdGrVlv~GG~~~~  393 (530)
                      .+.                 ..+.  ...++|+|||.++   +|+.+++++ .+|..|+++++  |++||+.||....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~--~~~iyv~GG~~~p  315 (323)
T TIGR03548       243 DLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLLT--GNNIFSINGELKP  315 (323)
T ss_pred             hhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC---eeeEcccccccccCchheEEE--CCEEEEEeccccC
Confidence            000                 0000  1246899999999   999999887 68999988777  9999999997544

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=99.93  E-value=9.7e-24  Score=219.86  Aligned_cols=285  Identities=13%  Similarity=0.173  Sum_probs=184.5

Q ss_pred             CCcEEEccCC----cchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCC
Q 042680           34 LGSWELISQN----AGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKN  109 (530)
Q Consensus        34 ~g~w~~~~~~----~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~  109 (530)
                      .++|+.+...    +.-+.-|.++. .+++||++||.....       .  .               .....++||+.++
T Consensus         6 ~~~W~~~~~~~~~~P~pR~~h~~~~-~~~~iyv~GG~~~~~-------~--~---------------~~~~~~~yd~~~~   60 (341)
T PLN02153          6 QGGWIKVEQKGGKGPGPRCSHGIAV-VGDKLYSFGGELKPN-------E--H---------------IDKDLYVFDFNTH   60 (341)
T ss_pred             CCeEEEecCCCCCCCCCCCcceEEE-ECCEEEEECCccCCC-------C--c---------------eeCcEEEEECCCC
Confidence            5789998652    33466777776 689999999974210       0  0               1245889999999


Q ss_pred             cEEEccccC--Cc-ccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCC
Q 042680          110 AVKALKVQS--DT-WCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERP  181 (530)
Q Consensus       110 ~w~~l~~~~--~~-~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~  181 (530)
                      +|+.++.+.  .+ .|.+++.       +..+++|||+||.+.    .++++| |.++   +|....++ .+..      
T Consensus        61 ~W~~~~~~~~~p~~~~~~~~~-------~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~---~W~~~~~~-~~~~------  123 (341)
T PLN02153         61 TWSIAPANGDVPRISCLGVRM-------VAVGTKLYIFGGRDEKREFSDFYSYDTVKN---EWTFLTKL-DEEG------  123 (341)
T ss_pred             EEEEcCccCCCCCCccCceEE-------EEECCEEEEECCCCCCCccCcEEEEECCCC---EEEEeccC-CCCC------
Confidence            999998763  22 2322221       233999999999753    368999 8875   45543332 1100      


Q ss_pred             CCCCccccccCCccceEEEecCCcEEEEeCc-------------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeecc
Q 042680          182 GNPKGRFRLENNLYPFVYLLPDGNVYVFANN-------------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLP  248 (530)
Q Consensus       182 ~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlp  248 (530)
                       .+..|       +-|..+..+++|||+||.             ++++||+++++|. .++++...+  .++.+.++.. 
T Consensus       124 -~p~~R-------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~-~l~~~~~~~--~~r~~~~~~~-  191 (341)
T PLN02153        124 -GPEAR-------TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV-QLPDPGENF--EKRGGAGFAV-  191 (341)
T ss_pred             -CCCCc-------eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe-eCCCCCCCC--CCCCcceEEE-
Confidence             01112       235667789999999993             4689999999999 687653110  1222322211 


Q ss_pred             CCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCccccceeeeecCCeE
Q 042680          249 LYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTMADGVLLPNGEV  324 (530)
Q Consensus       249 l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~~~~vvLpdG~V  324 (530)
                                ++++|||+||.... +..   .+.....++.+++|||.  +++|+..    .||.+|..+.++++ +++|
T Consensus       192 ----------~~~~iyv~GG~~~~-~~~---gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~~~~~~~-~~~i  254 (341)
T PLN02153        192 ----------VQGKIWVVYGFATS-ILP---GGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSVFAHAVV-GKYI  254 (341)
T ss_pred             ----------ECCeEEEEeccccc-ccc---CCccceecCceEEEEcC--CCcEEeccccCCCCCCcceeeeEEE-CCEE
Confidence                      47999999996421 100   00001125679999998  4999975    37899988888876 9999


Q ss_pred             EEEcCCCCCC-CCcccCCCCCcccEEecCCCCCCCceEEec-----CCCCCCcccccceecCCCeEEEcCCCCC
Q 042680          325 LIINGADLGS-GGWHCADKPSLKPMLYRPNAPEGQRFAELA-----PTDIPRMYHSVANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       325 lViGG~~~g~-~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la-----~~~~~R~yHS~a~LLpdGrVlv~GG~~~  392 (530)
                      ||+||..... .+......-...+++|||+++   +|+.+.     +++..|.+|+++++--+++||+.||...
T Consensus       255 yv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~  325 (341)
T PLN02153        255 IIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---VWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLP  325 (341)
T ss_pred             EEECcccCCccccccccccccccEEEEEcCcc---EEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCC
Confidence            9999964100 000000111236899999999   999875     5666676667777655679999999754

>PHA02790 Kelch-like protein; Provisional

Probab=99.92  E-value=2.8e-24  Score=233.90  Aligned_cols=200  Identities=13%  Similarity=0.109  Sum_probs=152.0

Q ss_pred             CCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccCCcccccceeccCCcEEE
Q 042680           56 KTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVM  135 (530)
Q Consensus        56 ~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~  135 (530)
                      .+++||++||.+..           .               ..+.+++|||.+++|.++++|+.+++..+++       +
T Consensus       270 ~~~~lyviGG~~~~-----------~---------------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-------~  316 (480)
T PHA02790        270 VGEVVYLIGGWMNN-----------E---------------IHNNAIAVNYISNNWIPIPPMNSPRLYASGV-------P  316 (480)
T ss_pred             ECCEEEEEcCCCCC-----------C---------------cCCeEEEEECCCCEEEECCCCCchhhcceEE-------E
Confidence            37899999986421           0               1256889999999999999998666544432       3


Q ss_pred             ccCCeEEEeccCCC-CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeC--
Q 042680          136 LSDGSFLVYGGRDA-FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN--  211 (530)
Q Consensus       136 L~dG~v~VvGG~~~-~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg--  211 (530)
                      + ||+||++||.+. .++|+| |.++   +|....||..           +|         +-++.+..+|+||++||  
T Consensus       317 ~-~~~iYviGG~~~~~sve~ydp~~n---~W~~~~~l~~-----------~r---------~~~~~~~~~g~IYviGG~~  372 (480)
T PHA02790        317 A-NNKLYVVGGLPNPTSVERWFHGDA---AWVNMPSLLK-----------PR---------CNPAVASINNVIYVIGGHS  372 (480)
T ss_pred             E-CCEEEEECCcCCCCceEEEECCCC---eEEECCCCCC-----------CC---------cccEEEEECCEEEEecCcC
Confidence            3 999999999854 579999 8875   5665555431           11         12556778999999999  


Q ss_pred             ---ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCC
Q 042680          212 ---NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALD  288 (530)
Q Consensus       212 ---~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~  288 (530)
                         +.+|+|||.+|+|. .+|+|+. +|..  .++++             .+++||++||.                   
T Consensus       373 ~~~~~ve~ydp~~~~W~-~~~~m~~-~r~~--~~~~~-------------~~~~IYv~GG~-------------------  416 (480)
T PHA02790        373 ETDTTTEYLLPNHDQWQ-FGPSTYY-PHYK--SCALV-------------FGRRLFLVGRN-------------------  416 (480)
T ss_pred             CCCccEEEEeCCCCEEE-eCCCCCC-cccc--ceEEE-------------ECCEEEEECCc-------------------
Confidence               35899999999999 7999873 4443  12222             48999999983                   


Q ss_pred             cEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEe
Q 042680          289 DCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAEL  363 (530)
Q Consensus       289 s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~l  363 (530)
                       +++|||.  +++|+.. +|+.+|..++++++ +|+|||+||.+.+        ....++|+|||+++   +|+.+
T Consensus       417 -~e~ydp~--~~~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~--------~~~~~ve~Yd~~~~---~W~~~  477 (480)
T PHA02790        417 -AEFYCES--SNTWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRG--------SYIDTIEVYNNRTY---SWNIW  477 (480)
T ss_pred             -eEEecCC--CCcEeEcCCCCCCccccEEEEE-CCEEEEECCcCCC--------cccceEEEEECCCC---eEEec
Confidence             3789997  5999997 99999999998886 9999999997521        12457999999999   99865

>PHA03098 kelch-like protein; Provisional

Probab=99.92  E-value=4.2e-24  Score=235.25  Aligned_cols=237  Identities=16%  Similarity=0.207  Sum_probs=175.5

Q ss_pred             eEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC-----CcEEEE-cCCCCCCCceEEeccccc
Q 042680          100 HSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA-----FSYEYV-PVEKESNKAAIAFPFLFE  173 (530)
Q Consensus       100 ~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~-----~s~E~y-P~~~~~~~~~~~~p~l~~  173 (530)
                      ...+|++.+++|.++..++.+.|.+++         ..+++|||+||.+.     .+++.| |.++   +|. ..|.+..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~---~W~-~~~~~~~  331 (534)
T PHA03098        265 NYITNYSPLSEINTIIDIHYVYCFGSV---------VLNNVIYFIGGMNKNNLSVNSVVSYDTKTK---SWN-KVPELIY  331 (534)
T ss_pred             eeeecchhhhhcccccCccccccceEE---------EECCEEEEECCCcCCCCeeccEEEEeCCCC---eee-ECCCCCc
Confidence            456789889999999776655554333         33999999999854     257888 8875   454 4443221


Q ss_pred             cccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEee
Q 042680          174 TQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVL  246 (530)
Q Consensus       174 t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svm  246 (530)
                                +|         +-+..+..+|+||++||.       ++++||+.+++|. .+++||. +|..   .+++.
T Consensus       332 ----------~R---------~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~lp~-~r~~---~~~~~  387 (534)
T PHA03098        332 ----------PR---------KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR-EEPPLIF-PRYN---PCVVN  387 (534)
T ss_pred             ----------cc---------ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee-eCCCcCc-CCcc---ceEEE
Confidence                      11         124567779999999994       5899999999998 7898883 4542   12221


Q ss_pred             ccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEE
Q 042680          247 LPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVL  325 (530)
Q Consensus       247 lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~Vl  325 (530)
                                  .+++||++||...+.           ..++++++|||.  +++|+.. +||.+|..+.++++ +|+||
T Consensus       388 ------------~~~~iYv~GG~~~~~-----------~~~~~v~~yd~~--t~~W~~~~~~p~~r~~~~~~~~-~~~iy  441 (534)
T PHA03098        388 ------------VNNLIYVIGGISKND-----------ELLKTVECFSLN--TNKWSKGSPLPISHYGGCAIYH-DGKIY  441 (534)
T ss_pred             ------------ECCEEEEECCcCCCC-----------cccceEEEEeCC--CCeeeecCCCCccccCceEEEE-CCEEE
Confidence                        479999999964221           236789999998  4899997 99999998888876 99999


Q ss_pred             EEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcc
Q 042680          326 IINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTEL  405 (530)
Q Consensus       326 ViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~  405 (530)
                      |+||.....     .......+++|||+++   +|+.+++++.+|..|+.+++  +|+|||.||.....      +  ..
T Consensus       442 v~GG~~~~~-----~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~------~--~~  503 (534)
T PHA03098        442 VIGGISYID-----NIKVYNIVESYNPVTN---KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEY------Y--IN  503 (534)
T ss_pred             EECCccCCC-----CCcccceEEEecCCCC---ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCc------c--cc
Confidence            999975211     0112345899999999   99999999999999988777  99999999975431      1  24


Q ss_pred             eEEEEcCCCCCC
Q 042680          406 RLEKFTPPYLAP  417 (530)
Q Consensus       406 ~vE~y~Ppyl~~  417 (530)
                      .+|+|+|..-.+
T Consensus       504 ~v~~yd~~~~~W  515 (534)
T PHA03098        504 EIEVYDDKTNTW  515 (534)
T ss_pred             eeEEEeCCCCEE
Confidence            699999987543

>PLN02153 epithiospecifier protein

Probab=99.90  E-value=3.6e-22  Score=208.07  Aligned_cols=251  Identities=14%  Similarity=0.122  Sum_probs=163.8

Q ss_pred             CCCCcEEEccc----cCCcccccceeccCCcEEEccCCeEEEeccCCC------CcEEEE-cCCCCCCCceEEecccccc
Q 042680          106 YNKNAVKALKV----QSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA------FSYEYV-PVEKESNKAAIAFPFLFET  174 (530)
Q Consensus       106 p~t~~w~~l~~----~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~------~s~E~y-P~~~~~~~~~~~~p~l~~t  174 (530)
                      +...+|+.+..    ++..++..+++        ..+++|||+||...      .++++| +.++   +|....++..  
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~--------~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~--   70 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIA--------VVGDKLYSFGGELKPNEHIDKDLYVFDFNTH---TWSIAPANGD--   70 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEE--------EECCEEEEECCccCCCCceeCcEEEEECCCC---EEEEcCccCC--
Confidence            35677999976    44344332222        33899999999842      357888 7764   4554333211  


Q ss_pred             ccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCC----CCCccCCCce
Q 042680          175 QDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPG----GARSYPATGT  243 (530)
Q Consensus       175 ~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~----~~r~yp~~g~  243 (530)
                              .++.+      .+-+..++.+++||++||.       ++++||+++++|. .+++|+.    .+|.    +.
T Consensus        71 --------~p~~~------~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~~~p~~R~----~~  131 (341)
T PLN02153         71 --------VPRIS------CLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWT-FLTKLDEEGGPEART----FH  131 (341)
T ss_pred             --------CCCCc------cCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEE-EeccCCCCCCCCCce----ee
Confidence                    01111      1235567789999999993       6899999999998 7887732    1333    22


Q ss_pred             EeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCC---Cccccceeeee
Q 042680          244 SVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMP---APRTMADGVLL  319 (530)
Q Consensus       244 svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~---~~R~~~~~vvL  319 (530)
                      ++..           .+++|||+||.+......      ....++++++|||.  +++|+.. +|.   .+|..+.++++
T Consensus       132 ~~~~-----------~~~~iyv~GG~~~~~~~~------~~~~~~~v~~yd~~--~~~W~~l~~~~~~~~~r~~~~~~~~  192 (341)
T PLN02153        132 SMAS-----------DENHVYVFGGVSKGGLMK------TPERFRTIEAYNIA--DGKWVQLPDPGENFEKRGGAGFAVV  192 (341)
T ss_pred             EEEE-----------ECCEEEEECCccCCCccC------CCcccceEEEEECC--CCeEeeCCCCCCCCCCCCcceEEEE
Confidence            2211           478999999975322110      01135678999998  4899986 553   78888887775


Q ss_pred             cCCeEEEEcCCCCCC--CCcccCCCCCcccEEecCCCCCCCceEEecC---CCCCCcccccceecCCCeEEEcCCCCCCC
Q 042680          320 PNGEVLIINGADLGS--GGWHCADKPSLKPMLYRPNAPEGQRFAELAP---TDIPRMYHSVANLLPDGKVFVGGSNDNDG  394 (530)
Q Consensus       320 pdG~VlViGG~~~g~--~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~---~~~~R~yHS~a~LLpdGrVlv~GG~~~~~  394 (530)
                       +|+|||+||.....  .|.  .......+++|||.++   +|+.++.   ++.+|..|+++++  +++|||.||.....
T Consensus       193 -~~~iyv~GG~~~~~~~gG~--~~~~~~~v~~yd~~~~---~W~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~  264 (341)
T PLN02153        193 -QGKIWVVYGFATSILPGGK--SDYESNAVQFFDPASG---KWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPD  264 (341)
T ss_pred             -CCeEEEEeccccccccCCc--cceecCceEEEEcCCC---cEEeccccCCCCCCcceeeeEEE--CCEEEEECcccCCc
Confidence             99999999964210  110  1111346899999999   9998864   6788999998777  99999999964211


Q ss_pred             ---CccccCCCCcceEEEEcCCCCCC
Q 042680          395 ---YFEFAKFPTELRLEKFTPPYLAP  417 (530)
Q Consensus       395 ---~~~~~~~~t~~~vE~y~Ppyl~~  417 (530)
                         ....+.+  ...+++|+|.....
T Consensus       265 ~~~~~~~~~~--~n~v~~~d~~~~~W  288 (341)
T PLN02153        265 LKGHLGPGTL--SNEGYALDTETLVW  288 (341)
T ss_pred             cccccccccc--cccEEEEEcCccEE
Confidence               0000112  23699999987643

>PHA03098 kelch-like protein; Provisional

Probab=99.90  E-value=1.7e-22  Score=222.49  Aligned_cols=238  Identities=14%  Similarity=0.139  Sum_probs=169.0

Q ss_pred             CCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEE
Q 042680           33 FLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVK  112 (530)
Q Consensus        33 ~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~  112 (530)
                      ...+|..+.. ...+..|.++. .++++|++||.+..        +  .               +....+.||+.+++|+
T Consensus       272 ~~~~~~~~~~-~~~~~~~~~~~-~~~~lyv~GG~~~~--------~--~---------------~~~~v~~yd~~~~~W~  324 (534)
T PHA03098        272 PLSEINTIID-IHYVYCFGSVV-LNNVIYFIGGMNKN--------N--L---------------SVNSVVSYDTKTKSWN  324 (534)
T ss_pred             hhhhcccccC-ccccccceEEE-ECCEEEEECCCcCC--------C--C---------------eeccEEEEeCCCCeee
Confidence            3456776643 23344445555 69999999997531        0  0               1245789999999999


Q ss_pred             EccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCcc
Q 042680          113 ALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGR  187 (530)
Q Consensus       113 ~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~  187 (530)
                      .++.|+..++..+++        ..+|+|||+||.+.    .++|+| |.++   +|....|+..           +   
T Consensus       325 ~~~~~~~~R~~~~~~--------~~~~~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~lp~-----------~---  379 (534)
T PHA03098        325 KVPELIYPRKNPGVT--------VFNNRIYVIGGIYNSISLNTVESWKPGES---KWREEPPLIF-----------P---  379 (534)
T ss_pred             ECCCCCcccccceEE--------EECCEEEEEeCCCCCEecceEEEEcCCCC---ceeeCCCcCc-----------C---
Confidence            999987554433332        33999999999863    468999 8875   4654444321           1   


Q ss_pred             ccccCCccceEEEecCCcEEEEeC--------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCC
Q 042680          188 FRLENNLYPFVYLLPDGNVYVFAN--------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPV  259 (530)
Q Consensus       188 ~~~~~~~Yp~~~llp~G~lfv~Gg--------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~  259 (530)
                            .+.+..+..+|+||++||        +++++|||.+++|. .+++||. +|..   ++++.            .
T Consensus       380 ------r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~p~-~r~~---~~~~~------------~  436 (534)
T PHA03098        380 ------RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS-KGSPLPI-SHYG---GCAIY------------H  436 (534)
T ss_pred             ------CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee-ecCCCCc-cccC---ceEEE------------E
Confidence                  134566778999999999        35899999999999 7888873 3432   22221            4


Q ss_pred             CcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcc
Q 042680          260 DAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWH  338 (530)
Q Consensus       260 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~  338 (530)
                      +++||++||.+....         ....+.+++|||.  +++|+.. +|+.+|..+.++++ +|+|||+||....     
T Consensus       437 ~~~iyv~GG~~~~~~---------~~~~~~v~~yd~~--~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~-----  499 (534)
T PHA03098        437 DGKIYVIGGISYIDN---------IKVYNIVESYNPV--TNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYE-----  499 (534)
T ss_pred             CCEEEEECCccCCCC---------CcccceEEEecCC--CCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCC-----
Confidence            799999999752210         0124569999998  4999998 89999998888876 9999999997621     


Q ss_pred             cCCCCCcccEEecCCCCCCCceEEecCCCC
Q 042680          339 CADKPSLKPMLYRPNAPEGQRFAELAPTDI  368 (530)
Q Consensus       339 ~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~  368 (530)
                         .....+|+|||+++   +|+.+..++.
T Consensus       500 ---~~~~~v~~yd~~~~---~W~~~~~~p~  523 (534)
T PHA03098        500 ---YYINEIEVYDDKTN---TWTLFCKFPK  523 (534)
T ss_pred             ---cccceeEEEeCCCC---EEEecCCCcc
Confidence               11347899999999   9998876554

>PLN02193 nitrile-specifier protein

Probab=99.89  E-value=2e-21  Score=211.12  Aligned_cols=272  Identities=15%  Similarity=0.188  Sum_probs=179.9

Q ss_pred             CcEEEccC---CcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcE
Q 042680           35 GSWELISQ---NAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAV  111 (530)
Q Consensus        35 g~w~~~~~---~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w  111 (530)
                      ++|..+..   .+.-++-|.+.. .+++||++||....        .  .      +        +....++||+.+++|
T Consensus       151 ~~W~~~~~~~~~P~pR~~h~~~~-~~~~iyv~GG~~~~--------~--~------~--------~~~~v~~yD~~~~~W  205 (470)
T PLN02193        151 GKWIKVEQKGEGPGLRCSHGIAQ-VGNKIYSFGGEFTP--------N--Q------P--------IDKHLYVFDLETRTW  205 (470)
T ss_pred             ceEEEcccCCCCCCCccccEEEE-ECCEEEEECCcCCC--------C--C------C--------eeCcEEEEECCCCEE
Confidence            78998765   234577788877 78999999996421        0  0      0        125588999999999


Q ss_pred             EEccccC---CcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCC
Q 042680          112 KALKVQS---DTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGN  183 (530)
Q Consensus       112 ~~l~~~~---~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~  183 (530)
                      +.++.+.   ...|.+++.       +..+++|||+||.+.    .++++| |.++   +|....++- ..         
T Consensus       206 ~~~~~~g~~P~~~~~~~~~-------v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~---~W~~l~~~~-~~---------  265 (470)
T PLN02193        206 SISPATGDVPHLSCLGVRM-------VSIGSTLYVFGGRDASRQYNGFYSFDTTTN---EWKLLTPVE-EG---------  265 (470)
T ss_pred             EeCCCCCCCCCCcccceEE-------EEECCEEEEECCCCCCCCCccEEEEECCCC---EEEEcCcCC-CC---------
Confidence            9886542   222333221       234999999999864    468899 8875   566554431 10         


Q ss_pred             CCccccccCCccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCC
Q 042680          184 PKGRFRLENNLYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTY  256 (530)
Q Consensus       184 ~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~  256 (530)
                      +       ...+-|..++.+++||++||.       +.+.||+.+++|. .+++ |+. ...++.++++..         
T Consensus       266 P-------~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~-~~~-~~~~R~~~~~~~---------  326 (470)
T PLN02193        266 P-------TPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF-HCST-PGD-SFSIRGGAGLEV---------  326 (470)
T ss_pred             C-------CCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCC-CCC-CCCCCCCcEEEE---------
Confidence            1       112336667789999999993       5789999999998 6654 211 111222222211         


Q ss_pred             CCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-C---CCCccccceeeeecCCeEEEEcCCCC
Q 042680          257 KPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-K---MPAPRTMADGVLLPNGEVLIINGADL  332 (530)
Q Consensus       257 ~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~---M~~~R~~~~~vvLpdG~VlViGG~~~  332 (530)
                        .+++||++||.+ +.            .++++++|||.  +++|+.. .   +|.+|..++++++ +++|||+||...
T Consensus       327 --~~gkiyviGG~~-g~------------~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~~-~~~iyv~GG~~~  388 (470)
T PLN02193        327 --VQGKVWVVYGFN-GC------------EVDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAAV-GKHIVIFGGEIA  388 (470)
T ss_pred             --ECCcEEEEECCC-CC------------ccCceEEEECC--CCEEEEeccCCCCCCCcceeEEEEE-CCEEEEECCccC
Confidence              378999999975 21            24678999998  4999975 4   4889999988876 999999999742


Q ss_pred             CC-CCcccCCCCCcccEEecCCCCCCCceEEecCC------CCCCcccccce--ecCCCeEEEcCCCC
Q 042680          333 GS-GGWHCADKPSLKPMLYRPNAPEGQRFAELAPT------DIPRMYHSVAN--LLPDGKVFVGGSND  391 (530)
Q Consensus       333 g~-~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~------~~~R~yHS~a~--LLpdGrVlv~GG~~  391 (530)
                      .. .+..........+++|||.++   +|+.+..+      +.+|..|+.+.  +..+.++++.||..
T Consensus       389 ~~~~~~~~~~~~~ndv~~~D~~t~---~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~  453 (470)
T PLN02193        389 MDPLAHVGPGQLTDGTFALDTETL---QWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKA  453 (470)
T ss_pred             CccccccCccceeccEEEEEcCcC---EEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCC
Confidence            10 000000112236899999999   99988753      56788886542  32233499999974

>PLN02193 nitrile-specifier protein

Probab=99.89  E-value=3.3e-21  Score=209.41  Aligned_cols=243  Identities=14%  Similarity=0.123  Sum_probs=167.1

Q ss_pred             EEEEeCCC----CcEEEcccc---CCcccccceeccCCcEEEccCCeEEEeccCCC------CcEEEE-cCCCCCCCceE
Q 042680          101 SIFYDYNK----NAVKALKVQ---SDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA------FSYEYV-PVEKESNKAAI  166 (530)
Q Consensus       101 ~~~yDp~t----~~w~~l~~~---~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~------~s~E~y-P~~~~~~~~~~  166 (530)
                      +.++||.+    ++|..+..+   +..++..+++        ..+++|||+||...      .++++| +.++   +|. 
T Consensus       139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~--------~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~---~W~-  206 (470)
T PLN02193        139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIA--------QVGNKIYSFGGEFTPNQPIDKHLYVFDLETR---TWS-  206 (470)
T ss_pred             EEEecCCChhhhceEEEcccCCCCCCCccccEEE--------EECCEEEEECCcCCCCCCeeCcEEEEECCCC---EEE-
Confidence            44558766    899998764   4345443332        33899999999742      357888 8764   454 


Q ss_pred             EeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeC-------ceEEEEeCCCCeEEEEccCCCC--CCCc
Q 042680          167 AFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN-------NRSVVHDPKANKIIREFPQLPG--GARS  237 (530)
Q Consensus       167 ~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg-------~~~e~yDp~tn~w~~~~p~mp~--~~r~  237 (530)
                      ..+....         .|+.      ...-+..+..+++||++||       +++++||+.+++|. .+++|+.  .+|.
T Consensus       207 ~~~~~g~---------~P~~------~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~  270 (470)
T PLN02193        207 ISPATGD---------VPHL------SCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWK-LLTPVEEGPTPRS  270 (470)
T ss_pred             eCCCCCC---------CCCC------cccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEE-EcCcCCCCCCCcc
Confidence            3332110         0110      1122456778999999999       36899999999998 6877732  1344


Q ss_pred             cCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCcccc
Q 042680          238 YPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTM  313 (530)
Q Consensus       238 yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~  313 (530)
                      +    +++..           .+++|||+||.+..            ..++++++|||.+  ++|+..    .|+.+|..
T Consensus       271 ~----h~~~~-----------~~~~iYv~GG~~~~------------~~~~~~~~yd~~t--~~W~~~~~~~~~~~~R~~  321 (470)
T PLN02193        271 F----HSMAA-----------DEENVYVFGGVSAT------------ARLKTLDSYNIVD--KKWFHCSTPGDSFSIRGG  321 (470)
T ss_pred             c----eEEEE-----------ECCEEEEECCCCCC------------CCcceEEEEECCC--CEEEeCCCCCCCCCCCCC
Confidence            3    22211           37899999997522            1356789999984  899875    27788988


Q ss_pred             ceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCC---CCCCcccccceecCCCeEEEcCCC
Q 042680          314 ADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPT---DIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       314 ~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~---~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      +.++++ +|+|||+||.. |.        ....+++|||+++   +|+.++++   +.+|..|+++++  +++|||.||.
T Consensus       322 ~~~~~~-~gkiyviGG~~-g~--------~~~dv~~yD~~t~---~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~  386 (470)
T PLN02193        322 AGLEVV-QGKVWVVYGFN-GC--------EVDDVHYYDPVQD---KWTQVETFGVRPSERSVFASAAV--GKHIVIFGGE  386 (470)
T ss_pred             cEEEEE-CCcEEEEECCC-CC--------ccCceEEEECCCC---EEEEeccCCCCCCCcceeEEEEE--CCEEEEECCc
Confidence            888776 99999999964 21        1347899999999   99998765   789999998877  9999999997


Q ss_pred             CCCCCc-c--ccCCCCcceEEEEcCCCCCC
Q 042680          391 DNDGYF-E--FAKFPTELRLEKFTPPYLAP  417 (530)
Q Consensus       391 ~~~~~~-~--~~~~~t~~~vE~y~Ppyl~~  417 (530)
                      ...... .  .+.+  ..++++|+|.....
T Consensus       387 ~~~~~~~~~~~~~~--~ndv~~~D~~t~~W  414 (470)
T PLN02193        387 IAMDPLAHVGPGQL--TDGTFALDTETLQW  414 (470)
T ss_pred             cCCccccccCccce--eccEEEEEcCcCEE
Confidence            431100 0  0112  23599999988743

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.87  E-value=1.2e-20  Score=196.70  Aligned_cols=228  Identities=18%  Similarity=0.133  Sum_probs=141.1

Q ss_pred             cCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc---
Q 042680          137 SDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN---  212 (530)
Q Consensus       137 ~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~---  212 (530)
                      .+++|||+||....++++| +... .++|....+|...          +|.         -+..++.+|+|||+||.   
T Consensus        16 ~~~~vyv~GG~~~~~~~~~d~~~~-~~~W~~l~~~p~~----------~R~---------~~~~~~~~~~iYv~GG~~~~   75 (346)
T TIGR03547        16 IGDKVYVGLGSAGTSWYKLDLKKP-SKGWQKIADFPGG----------PRN---------QAVAAAIDGKLYVFGGIGKA   75 (346)
T ss_pred             ECCEEEEEccccCCeeEEEECCCC-CCCceECCCCCCC----------Ccc---------cceEEEECCEEEEEeCCCCC
Confidence            3999999999876677777 5321 1346544444211          111         24567789999999994   


Q ss_pred             ----------eEEEEeCCCCeEEEEcc-CCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc---
Q 042680          213 ----------RSVVHDPKANKIIREFP-QLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE---  278 (530)
Q Consensus       213 ----------~~e~yDp~tn~w~~~~p-~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~---  278 (530)
                                ++|+|||.+|+|. .++ ++|   |..  .+.+++.          ..+++||++||.+...+....   
T Consensus        76 ~~~~~~~~~~~v~~Yd~~~~~W~-~~~~~~p---~~~--~~~~~~~----------~~~g~IYviGG~~~~~~~~~~~~~  139 (346)
T TIGR03547        76 NSEGSPQVFDDVYRYDPKKNSWQ-KLDTRSP---VGL--LGASGFS----------LHNGQAYFTGGVNKNIFDGYFADL  139 (346)
T ss_pred             CCCCcceecccEEEEECCCCEEe-cCCCCCC---Ccc--cceeEEE----------EeCCEEEEEcCcChHHHHHHHhhH
Confidence                      4799999999999 665 333   221  2332210          038999999997521100000   


Q ss_pred             -c-c-----------------ccccccCCcEEEEEcCCCCCcceec-CCCC-ccccceeeeecCCeEEEEcCCCCCCCCc
Q 042680          279 -E-E-----------------KRFVNALDDCARMVVTSPNPEWKIE-KMPA-PRTMADGVLLPNGEVLIINGADLGSGGW  337 (530)
Q Consensus       279 -~-~-----------------~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~-~R~~~~~vvLpdG~VlViGG~~~g~~g~  337 (530)
                       . .                 ......++++++|||.  +++|+.. +|+. +|..+.++++ +|+|||+||....  + 
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~--t~~W~~~~~~p~~~r~~~~~~~~-~~~iyv~GG~~~~--~-  213 (346)
T TIGR03547       140 SAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPS--TNQWRNLGENPFLGTAGSAIVHK-GNKLLLINGEIKP--G-  213 (346)
T ss_pred             hhcCccchhhhhhHHHHhCCChhHcCccceEEEEECC--CCceeECccCCCCcCCCceEEEE-CCEEEEEeeeeCC--C-
Confidence             0 0                 0000024789999998  4999998 8997 5766666665 9999999997421  0 


Q ss_pred             ccCCCCCcccEEe--cCCCCCCCceEEecCCCCCCc-------ccccceecCCCeEEEcCCCCCCCCcc---ccC-C---
Q 042680          338 HCADKPSLKPMLY--RPNAPEGQRFAELAPTDIPRM-------YHSVANLLPDGKVFVGGSNDNDGYFE---FAK-F---  401 (530)
Q Consensus       338 ~~~~~p~~~~eiY--DP~t~~g~~Wt~la~~~~~R~-------yHS~a~LLpdGrVlv~GG~~~~~~~~---~~~-~---  401 (530)
                          ......++|  ||+++   +|+.+++|+.+|.       .|+++++  +|+|||+||....+..-   .+. +   
T Consensus       214 ----~~~~~~~~y~~~~~~~---~W~~~~~m~~~r~~~~~~~~~~~a~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~  284 (346)
T TIGR03547       214 ----LRTAEVKQYLFTGGKL---EWNKLPPLPPPKSSSQEGLAGAFAGIS--NGVLLVAGGANFPGAQENYKNGKLYAHE  284 (346)
T ss_pred             ----ccchheEEEEecCCCc---eeeecCCCCCCCCCccccccEEeeeEE--CCEEEEeecCCCCCchhhhhcCCccccC
Confidence                011234445  56788   9999999998873       3434455  99999999964321000   000 0   


Q ss_pred             --CCcceEEEEcCCCC
Q 042680          402 --PTELRLEKFTPPYL  415 (530)
Q Consensus       402 --~t~~~vE~y~Ppyl  415 (530)
                        ....++|+|+|..-
T Consensus       285 ~~~~~~~~e~yd~~~~  300 (346)
T TIGR03547       285 GLIKAWSSEVYALDNG  300 (346)
T ss_pred             CCCceeEeeEEEecCC
Confidence              01246999999853

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.85  E-value=6.1e-20  Score=194.05  Aligned_cols=252  Identities=16%  Similarity=0.164  Sum_probs=159.6

Q ss_pred             CCcEEEccCCcc-hheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEE
Q 042680           34 LGSWELISQNAG-ISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVK  112 (530)
Q Consensus        34 ~g~w~~~~~~~~-v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~  112 (530)
                      .++|..+.+... .+..|.++. .+++||++||......     ++    .           ..+....++||+.+++|+
T Consensus        61 ~~~W~~l~~~p~~~r~~~~~v~-~~~~IYV~GG~~~~~~-----~~----~-----------~~~~~~v~~YD~~~n~W~  119 (376)
T PRK14131         61 SKGWTKIAAFPGGPREQAVAAF-IDGKLYVFGGIGKTNS-----EG----S-----------PQVFDDVYKYDPKTNSWQ  119 (376)
T ss_pred             CCCeEECCcCCCCCcccceEEE-ECCEEEEEcCCCCCCC-----CC----c-----------eeEcccEEEEeCCCCEEE
Confidence            367998876543 455565555 6899999999642100     00    0           013467899999999999


Q ss_pred             EccccC-CcccccceeccCCcEEEccCCeEEEeccCCC--------------------------------------CcEE
Q 042680          113 ALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRDA--------------------------------------FSYE  153 (530)
Q Consensus       113 ~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~--------------------------------------~s~E  153 (530)
                      .++.+. ...+..+++       ++.||+|||+||.+.                                      ..+|
T Consensus       120 ~~~~~~p~~~~~~~~~-------~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~  192 (376)
T PRK14131        120 KLDTRSPVGLAGHVAV-------SLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVL  192 (376)
T ss_pred             eCCCCCCCcccceEEE-------EeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEE
Confidence            998542 222211211       334999999999752                                      3589


Q ss_pred             EE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc------eEE----EEeCCCC
Q 042680          154 YV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN------RSV----VHDPKAN  222 (530)
Q Consensus       154 ~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~------~~e----~yDp~tn  222 (530)
                      +| |.++   .|....++...          +         ..-+.++..+++||++||.      ..+    .||++++
T Consensus       193 ~YD~~t~---~W~~~~~~p~~----------~---------~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~  250 (376)
T PRK14131        193 SYDPSTN---QWKNAGESPFL----------G---------TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNL  250 (376)
T ss_pred             EEECCCC---eeeECCcCCCC----------C---------CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCc
Confidence            99 9876   46544333210          1         1234567779999999983      222    4588999


Q ss_pred             eEEEEccCCCCCCCcc--CC--Cce-EeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccc-----ccccCCcEEE
Q 042680          223 KIIREFPQLPGGARSY--PA--TGT-SVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKR-----FVNALDDCAR  292 (530)
Q Consensus       223 ~w~~~~p~mp~~~r~y--p~--~g~-svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~-----~~~a~~s~~~  292 (530)
                      +|. .+++||. +|..  +.  .+. +++            .+++|||+||.+..........+.     ......++|+
T Consensus       251 ~W~-~~~~~p~-~~~~~~~~~~~~~~a~~------------~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  316 (376)
T PRK14131        251 KWQ-KLPDLPP-APGGSSQEGVAGAFAGY------------SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEI  316 (376)
T ss_pred             cee-ecCCCCC-CCcCCcCCccceEecee------------ECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehhe
Confidence            999 7999984 3321  11  111 121            378999999975211000000000     0011235789


Q ss_pred             EEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEE
Q 042680          293 MVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAE  362 (530)
Q Consensus       293 ~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~  362 (530)
                      |||.  +++|+.. +||.+|.++.++++ +|+|||+||...+       ......+++|+|+.+   .++.
T Consensus       317 yd~~--~~~W~~~~~lp~~r~~~~av~~-~~~iyv~GG~~~~-------~~~~~~v~~~~~~~~---~~~~  374 (376)
T PRK14131        317 YALV--NGKWQKVGELPQGLAYGVSVSW-NNGVLLIGGETAG-------GKAVSDVTLLSWDGK---KLTV  374 (376)
T ss_pred             EEec--CCcccccCcCCCCccceEEEEe-CCEEEEEcCCCCC-------CcEeeeEEEEEEcCC---EEEE
Confidence            9998  4899987 99999999887776 9999999997521       123557899999987   7654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.84  E-value=2.1e-19  Score=185.86  Aligned_cols=223  Identities=17%  Similarity=0.126  Sum_probs=147.7

Q ss_pred             cEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcE----
Q 042680           36 SWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAV----  111 (530)
Q Consensus        36 ~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w----  111 (530)
                      +|..+..+..-++.|..+. .+++||++||.+..           .               +....++||+.+++|    
T Consensus        52 ~W~~~~~lp~~r~~~~~~~-~~~~lyviGG~~~~-----------~---------------~~~~v~~~d~~~~~w~~~~  104 (323)
T TIGR03548        52 KWVKDGQLPYEAAYGASVS-VENGIYYIGGSNSS-----------E---------------RFSSVYRITLDESKEELIC  104 (323)
T ss_pred             eEEEcccCCccccceEEEE-ECCEEEEEcCCCCC-----------C---------------CceeEEEEEEcCCceeeee
Confidence            6999876665565555554 58999999986421           1               235688999999998    


Q ss_pred             EEccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCc
Q 042680          112 KALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKG  186 (530)
Q Consensus       112 ~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~  186 (530)
                      +.++.|+..++..+++        +.+|+|||+||...    .++|+| |.++   +|....++...          +| 
T Consensus       105 ~~~~~lp~~~~~~~~~--------~~~~~iYv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~----------~r-  162 (323)
T TIGR03548       105 ETIGNLPFTFENGSAC--------YKDGTLYVGGGNRNGKPSNKSYLFNLETQ---EWFELPDFPGE----------PR-  162 (323)
T ss_pred             eEcCCCCcCccCceEE--------EECCEEEEEeCcCCCccCceEEEEcCCCC---CeeECCCCCCC----------CC-
Confidence            7788887555543332        34999999999732    478999 8875   56554444211          11 


Q ss_pred             cccccCCccceEEEecCCcEEEEeCc------eEEEEeCCCCeEEEEccCCCCC--CCccCCCceEeeccCCCCCCCCCC
Q 042680          187 RFRLENNLYPFVYLLPDGNVYVFANN------RSVVHDPKANKIIREFPQLPGG--ARSYPATGTSVLLPLYLPRDTYKP  258 (530)
Q Consensus       187 ~~~~~~~~Yp~~~llp~G~lfv~Gg~------~~e~yDp~tn~w~~~~p~mp~~--~r~yp~~g~svmlpl~~~~~~~~~  258 (530)
                              .-++.+..+++|||+||.      ++++|||++++|. .+++|+..  ++... ..+++.+           
T Consensus       163 --------~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~p~~~~-~~~~~~~-----------  221 (323)
T TIGR03548       163 --------VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ-KVADPTTDSEPISLL-GAASIKI-----------  221 (323)
T ss_pred             --------CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE-ECCCCCCCCCceecc-ceeEEEE-----------
Confidence                    124556789999999994      4689999999998 78877521  22211 1222211           


Q ss_pred             CCcEEEEecCccCCcccccccc-------------------c-cccccCCcEEEEEcCCCCCcceec-CCC-Ccccccee
Q 042680          259 VDAEVLICGGSVREGLYLGEEE-------------------K-RFVNALDDCARMVVTSPNPEWKIE-KMP-APRTMADG  316 (530)
Q Consensus       259 ~~gkI~v~GG~~~~~~~~~~~~-------------------~-~~~~a~~s~~~~dp~~~~~~W~~~-~M~-~~R~~~~~  316 (530)
                      .+++|||+||.+...+.+.-..                   + ....-.+++++|||..  ++|+.. +|+ .+|..+.+
T Consensus       222 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~~r~~~~~  299 (323)
T TIGR03548       222 NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRT--GKWKSIGNSPFFARCGAAL  299 (323)
T ss_pred             CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCC--CeeeEcccccccccCchhe
Confidence            3689999999752211000000                   0 0000136799999984  899987 787 58888888


Q ss_pred             eeecCCeEEEEcCCC
Q 042680          317 VLLPNGEVLIINGAD  331 (530)
Q Consensus       317 vvLpdG~VlViGG~~  331 (530)
                      +++ +++||++||..
T Consensus       300 ~~~-~~~iyv~GG~~  313 (323)
T TIGR03548       300 LLT-GNNIFSINGEL  313 (323)
T ss_pred             EEE-CCEEEEEeccc
Confidence            876 99999999964

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.58  E-value=3.7e-13  Score=131.72  Aligned_cols=281  Identities=15%  Similarity=0.156  Sum_probs=173.2

Q ss_pred             cEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEcc
Q 042680           36 SWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALK  115 (530)
Q Consensus        36 ~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~  115 (530)
                      .|..-.....-+--|+++. ...+||-||+.-.+..-          +.       ..++    .+-.++..+-.|+.++
T Consensus         3 ~WTVHLeGGPrRVNHAava-VG~riYSFGGYCsGedy----------~~-------~~pi----DVH~lNa~~~RWtk~p   60 (392)
T KOG4693|consen    3 TWTVHLEGGPRRVNHAAVA-VGSRIYSFGGYCSGEDY----------DA-------KDPI----DVHVLNAENYRWTKMP   60 (392)
T ss_pred             eEEEEecCCcccccceeee-ecceEEecCCccccccc----------cc-------CCcc----eeEEeeccceeEEecC
Confidence            4777555556678899988 88999999998654210          00       0111    2346777788899887


Q ss_pred             ccC-Cc----ccccceeccCCcEEEccCCeEEEeccCCC-----Cc-EEEEcCCCCCCCce--EEeccccccccccCCCC
Q 042680          116 VQS-DT----WCSSGGLSADGRLVMLSDGSFLVYGGRDA-----FS-YEYVPVEKESNKAA--IAFPFLFETQDFLERPG  182 (530)
Q Consensus       116 ~~~-~~----~~~~~~~l~dG~l~~L~dG~v~VvGG~~~-----~s-~E~yP~~~~~~~~~--~~~p~l~~t~d~~~~~~  182 (530)
                      +.. +.    -++..-++-=|.-+++-++++||-||++.     +. +||-|.++   .|.  ...-++..         
T Consensus        61 p~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~---~W~~p~v~G~vPg---------  128 (392)
T KOG4693|consen   61 PGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETN---VWKKPEVEGFVPG---------  128 (392)
T ss_pred             cccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccc---cccccceeeecCC---------
Confidence            631 10    01100011112223456999999999975     22 44449886   343  22222211         


Q ss_pred             CCCccccccCCccceEEEecCCcEEEEeC---------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCC
Q 042680          183 NPKGRFRLENNLYPFVYLLPDGNVYVFAN---------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPR  253 (530)
Q Consensus       183 ~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg---------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~  253 (530)
                         .|       --|..++.+..+|||||         ++...+|..|-+|. .+-.. +.+..|.-..++++       
T Consensus       129 ---aR-------DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr-~~~Tk-g~PprwRDFH~a~~-------  189 (392)
T KOG4693|consen  129 ---AR-------DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWR-EMHTK-GDPPRWRDFHTASV-------  189 (392)
T ss_pred             ---cc-------CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeee-ehhcc-CCCchhhhhhhhhh-------
Confidence               11       13567888999999999         35778999999997 55332 11212222244443       


Q ss_pred             CCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec---C-CCCccccceeeeecCCeEEEEcC
Q 042680          254 DTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE---K-MPAPRTMADGVLLPNGEVLIING  329 (530)
Q Consensus       254 ~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~---~-M~~~R~~~~~vvLpdG~VlViGG  329 (530)
                           +++.+||+||..... ...  -.....--.....+|..  +..|...   . .|.+|..|++-+. ||++|++||
T Consensus       190 -----~~~~MYiFGGR~D~~-gpf--Hs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGG  258 (392)
T KOG4693|consen  190 -----IDGMMYIFGGRSDES-GPF--HSIHEQYCDTIMALDLA--TGAWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGG  258 (392)
T ss_pred             -----ccceEEEeccccccC-CCc--cchhhhhcceeEEEecc--ccccccCCCCCcCCCcccccceEEE-cceEEEecc
Confidence                 479999999975321 100  00000011223335544  5889863   3 5889999998886 999999999


Q ss_pred             CCCCCCCcccCCCCCcccEEecCCCCCCCceEEec---CCCCCCcccccceecCCCeEEEcCCCC
Q 042680          330 ADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELA---PTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       330 ~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la---~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      ++ |.-     +.-.....+|||++.   .|+.+.   .-+.+|.-|++.+.  ++|||+.||-.
T Consensus       259 Yn-g~l-----n~HfndLy~FdP~t~---~W~~I~~~Gk~P~aRRRqC~~v~--g~kv~LFGGTs  312 (392)
T KOG4693|consen  259 YN-GTL-----NVHFNDLYCFDPKTS---MWSVISVRGKYPSARRRQCSVVS--GGKVYLFGGTS  312 (392)
T ss_pred             cc-hhh-----hhhhcceeecccccc---hheeeeccCCCCCcccceeEEEE--CCEEEEecCCC
Confidence            87 331     222346789999999   998653   45677877877776  99999999964

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.27  E-value=4.8e-10  Score=122.51  Aligned_cols=252  Identities=17%  Similarity=0.209  Sum_probs=166.2

Q ss_pred             CcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccC--Cc
Q 042680           43 NAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQS--DT  120 (530)
Q Consensus        43 ~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~--~~  120 (530)
                      ....++-|++.+ .++|++|||+...+           .|..            +. ..+++|..+..|.....-.  ..
T Consensus        57 ~p~~R~~hs~~~-~~~~~~vfGG~~~~-----------~~~~------------~~-dl~~~d~~~~~w~~~~~~g~~p~  111 (482)
T KOG0379|consen   57 GPIPRAGHSAVL-IGNKLYVFGGYGSG-----------DRLT------------DL-DLYVLDLESQLWTKPAATGDEPS  111 (482)
T ss_pred             CcchhhccceeE-ECCEEEEECCCCCC-----------Cccc------------cc-eeEEeecCCcccccccccCCCCC
Confidence            445588999998 79999999997542           1110            11 4789999998888764332  21


Q ss_pred             ccccceeccCCcEEEccCCeEEEeccCCC-----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCc
Q 042680          121 WCSSGGLSADGRLVMLSDGSFLVYGGRDA-----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNL  194 (530)
Q Consensus       121 ~~~~~~~l~dG~l~~L~dG~v~VvGG~~~-----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~  194 (530)
                      -+.++.      ++++ +.++|++||++.     +.+..| +.+.   +|....+.    .+      .|..|       
T Consensus       112 ~r~g~~------~~~~-~~~l~lfGG~~~~~~~~~~l~~~d~~t~---~W~~l~~~----~~------~P~~r-------  164 (482)
T KOG0379|consen  112 PRYGHS------LSAV-GDKLYLFGGTDKKYRNLNELHSLDLSTR---TWSLLSPT----GD------PPPPR-------  164 (482)
T ss_pred             ccccee------EEEE-CCeEEEEccccCCCCChhheEeccCCCC---cEEEecCc----CC------CCCCc-------
Confidence            222222      2234 899999999974     245556 6654   34433322    11      12222       


Q ss_pred             cceEEEecCCcEEEEeC--------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEe
Q 042680          195 YPFVYLLPDGNVYVFAN--------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLIC  266 (530)
Q Consensus       195 Yp~~~llp~G~lfv~Gg--------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~  266 (530)
                      .-|..++.+.+||||||        ++.++||+++.+|. ++.. .+. .--|+.+.+...           .+.+++++
T Consensus       165 ~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~-~~~~-~g~-~P~pR~gH~~~~-----------~~~~~~v~  230 (482)
T KOG0379|consen  165 AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWS-ELDT-QGE-APSPRYGHAMVV-----------VGNKLLVF  230 (482)
T ss_pred             ccceEEEECCEEEEECCccCcccceeeeeeeccccccce-eccc-CCC-CCCCCCCceEEE-----------ECCeEEEE
Confidence            34777888999999999        46899999999998 4432 221 112444444321           47899999


Q ss_pred             cCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCC
Q 042680          267 GGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADK  342 (530)
Q Consensus       267 GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~  342 (530)
                      ||...+.           ..++++.++|...  -+|...    .+|.+|..|.++. -..+++|+||...+.      ..
T Consensus       231 gG~~~~~-----------~~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~~-~~~~~~l~gG~~~~~------~~  290 (482)
T KOG0379|consen  231 GGGDDGD-----------VYLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLTV-SGDHLLLFGGGTDPK------QE  290 (482)
T ss_pred             eccccCC-----------ceecceEeeeccc--ceeeeccccCCCCCCcceeeeEE-ECCEEEEEcCCcccc------cc
Confidence            9976221           2467889999874  889842    5899999999995 488999999976320      01


Q ss_pred             CCcccEEecCCCCCCCceEEecCC----CCCCcccccceecCCCe
Q 042680          343 PSLKPMLYRPNAPEGQRFAELAPT----DIPRMYHSVANLLPDGK  383 (530)
Q Consensus       343 p~~~~eiYDP~t~~g~~Wt~la~~----~~~R~yHS~a~LLpdGr  383 (530)
                      +......||..+.   .|+.+...    +.+|.-|...+.-..++
T Consensus       291 ~l~~~~~l~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (482)
T KOG0379|consen  291 PLGDLYGLDLETL---VWSKVESVGVVRPSPRLGHAAELIDELGK  332 (482)
T ss_pred             ccccccccccccc---ceeeeeccccccccccccccceeeccCCc
Confidence            4557788999988   88865444    46788888776544444

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.16  E-value=1.4e-09  Score=118.98  Aligned_cols=160  Identities=18%  Similarity=0.257  Sum_probs=116.0

Q ss_pred             ccceEEEecCCcEEEEeCc--------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEE
Q 042680          194 LYPFVYLLPDGNVYVFANN--------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLI  265 (530)
Q Consensus       194 ~Yp~~~llp~G~lfv~Gg~--------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v  265 (530)
                      -|-|..+..+.+||+|||.        ....||+.|++|. .+.+....+  -|+.+.++..           ...+|||
T Consensus       113 r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~-~l~~~~~~P--~~r~~Hs~~~-----------~g~~l~v  178 (482)
T KOG0379|consen  113 RYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWS-LLSPTGDPP--PPRAGHSATV-----------VGTKLVV  178 (482)
T ss_pred             ccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEE-EecCcCCCC--CCcccceEEE-----------ECCEEEE
Confidence            3456777789999999994        5789999999998 454332211  1122333321           3789999


Q ss_pred             ecCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCC
Q 042680          266 CGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCAD  341 (530)
Q Consensus       266 ~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~  341 (530)
                      +||.+...           ..++++.+||+..  .+|...    .-|.||..|.+++. ++++||+||...+       +
T Consensus       179 fGG~~~~~-----------~~~ndl~i~d~~~--~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~-------~  237 (482)
T KOG0379|consen  179 FGGIGGTG-----------DSLNDLHIYDLET--STWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDG-------D  237 (482)
T ss_pred             ECCccCcc-----------cceeeeeeecccc--ccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccC-------C
Confidence            99986221           1467899999984  789863    57889999998886 9999999996521       1


Q ss_pred             CCCcccEEecCCCCCCCceEEe---cCCCCCCcccccceecCCCeEEEcCCCCCC
Q 042680          342 KPSLKPMLYRPNAPEGQRFAEL---APTDIPRMYHSVANLLPDGKVFVGGSNDND  393 (530)
Q Consensus       342 ~p~~~~eiYDP~t~~g~~Wt~l---a~~~~~R~yHS~a~LLpdGrVlv~GG~~~~  393 (530)
                      .....+.++|-.+-   +|..+   ...+.+|++|+.++.  ..++++.||.+..
T Consensus       238 ~~l~D~~~ldl~~~---~W~~~~~~g~~p~~R~~h~~~~~--~~~~~l~gG~~~~  287 (482)
T KOG0379|consen  238 VYLNDVHILDLSTW---EWKLLPTGGDLPSPRSGHSLTVS--GDHLLLFGGGTDP  287 (482)
T ss_pred             ceecceEeeecccc---eeeeccccCCCCCCcceeeeEEE--CCEEEEEcCCccc
Confidence            22446789999998   99854   466789999998865  8888888887653

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=99.16  E-value=5.1e-10  Score=111.12  Aligned_cols=135  Identities=24%  Similarity=0.400  Sum_probs=90.3

Q ss_pred             eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEE
Q 042680          213 RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCAR  292 (530)
Q Consensus       213 ~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~  292 (530)
                      .+.+||+.+|++. .+.. .   .+--+ ++.++||           +|++++.||...+              .+.+..
T Consensus        47 ~s~~yD~~tn~~r-pl~v-~---td~FC-Sgg~~L~-----------dG~ll~tGG~~~G--------------~~~ir~   95 (243)
T PF07250_consen   47 HSVEYDPNTNTFR-PLTV-Q---TDTFC-SGGAFLP-----------DGRLLQTGGDNDG--------------NKAIRI   95 (243)
T ss_pred             EEEEEecCCCcEE-eccC-C---CCCcc-cCcCCCC-----------CCCEEEeCCCCcc--------------ccceEE
Confidence            4678999999987 5542 1   23233 3444554           7999999997532              233456


Q ss_pred             EEcCC--CCCcceec--CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCC--CceEEecCC
Q 042680          293 MVVTS--PNPEWKIE--KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEG--QRFAELAPT  366 (530)
Q Consensus       293 ~dp~~--~~~~W~~~--~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g--~~Wt~la~~  366 (530)
                      |+|..  ....|...  .|..+|+|+++++|+||+|+|+||..            ..+.|.|++.....  ..|..+...
T Consensus        96 ~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~------------~~t~E~~P~~~~~~~~~~~~~l~~~  163 (243)
T PF07250_consen   96 FTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN------------NPTYEFWPPKGPGPGPVTLPFLSQT  163 (243)
T ss_pred             EecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC------------CCcccccCCccCCCCceeeecchhh
Confidence            77753  24579875  69999999999999999999999975            12457666643311  233333322


Q ss_pred             --CCCCcccccceecCCCeEEEcCCC
Q 042680          367 --DIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       367 --~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                        ..+..+.--..|||||+||+.+..
T Consensus       164 ~~~~~~nlYP~~~llPdG~lFi~an~  189 (243)
T PF07250_consen  164 SDTLPNNLYPFVHLLPDGNLFIFANR  189 (243)
T ss_pred             hccCccccCceEEEcCCCCEEEEEcC
Confidence              334444445678899999999874

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.15  E-value=3.2e-10  Score=111.33  Aligned_cols=160  Identities=16%  Similarity=0.270  Sum_probs=117.0

Q ss_pred             eEEEecCCcEEEEeCc------------eEEEEeCCCCeEEEEccC-C-----CCC--CCccCCCceEeeccCCCCCCCC
Q 042680          197 FVYLLPDGNVYVFANN------------RSVVHDPKANKIIREFPQ-L-----PGG--ARSYPATGTSVLLPLYLPRDTY  256 (530)
Q Consensus       197 ~~~llp~G~lfv~Gg~------------~~e~yDp~tn~w~~~~p~-m-----p~~--~r~yp~~g~svmlpl~~~~~~~  256 (530)
                      |+.+....+||-|||.            ++.+++-.+-+|+ ++|+ +     +..  .--|.+.|.++++         
T Consensus        17 HAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWt-k~pp~~~ka~i~~~yp~VPyqRYGHtvV~---------   86 (392)
T KOG4693|consen   17 HAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWT-KMPPGITKATIESPYPAVPYQRYGHTVVE---------   86 (392)
T ss_pred             ceeeeecceEEecCCcccccccccCCcceeEEeeccceeEE-ecCcccccccccCCCCccchhhcCceEEE---------
Confidence            6677889999999993            4667777788999 6776 1     110  1123344666643         


Q ss_pred             CCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCccee---c-CCCCccccceeeeecCCeEEEEcCCCC
Q 042680          257 KPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKI---E-KMPAPRTMADGVLLPNGEVLIINGADL  332 (530)
Q Consensus       257 ~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~---~-~M~~~R~~~~~vvLpdG~VlViGG~~~  332 (530)
                        +++++|+-||.+...           .+-+...+|||+  +++|..   + -.|-+|-.|+++++ +..+||+||...
T Consensus        87 --y~d~~yvWGGRND~e-----------gaCN~Ly~fDp~--t~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~  150 (392)
T KOG4693|consen   87 --YQDKAYVWGGRNDDE-----------GACNLLYEFDPE--TNVWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEE  150 (392)
T ss_pred             --EcceEEEEcCccCcc-----------cccceeeeeccc--cccccccceeeecCCccCCceeeEE-CcEEEEecChHH
Confidence              589999999987321           355677889998  599975   3 58999999999997 999999999763


Q ss_pred             CCCCcccCCCCCcccEEecCCCCCCCceEEecCCC---CCCcccccceecCCCeEEEcCCCCCC
Q 042680          333 GSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD---IPRMYHSVANLLPDGKVFVGGSNDND  393 (530)
Q Consensus       333 g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~---~~R~yHS~a~LLpdGrVlv~GG~~~~  393 (530)
                      ...      .-.......|-+|-   +|+.+..-.   .-|-+|++.++  |++.||.||....
T Consensus       151 ~a~------~FS~d~h~ld~~Tm---tWr~~~Tkg~PprwRDFH~a~~~--~~~MYiFGGR~D~  203 (392)
T KOG4693|consen  151 DAQ------RFSQDTHVLDFATM---TWREMHTKGDPPRWRDFHTASVI--DGMMYIFGGRSDE  203 (392)
T ss_pred             HHH------hhhccceeEeccce---eeeehhccCCCchhhhhhhhhhc--cceEEEecccccc
Confidence            222      22335678899999   999765444   44889998887  9999999996543

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.04  E-value=3.4e-09  Score=109.55  Aligned_cols=207  Identities=18%  Similarity=0.280  Sum_probs=139.6

Q ss_pred             CceeEEEEeCCCCcEEEcccc--CCcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccc
Q 042680           97 CWCHSIFYDYNKNAVKALKVQ--SDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFE  173 (530)
Q Consensus        97 ~~a~~~~yDp~t~~w~~l~~~--~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~  173 (530)
                      .++.-+.||.++++|+.+...  +.++|+..++       +.+.|.+++.||.      |- |...              
T Consensus        96 vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~v-------a~~s~~l~~fGGE------faSPnq~--------------  148 (521)
T KOG1230|consen   96 VYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAV-------AVPSNILWLFGGE------FASPNQE--------------  148 (521)
T ss_pred             EeeeeeEEeccccceeEeccCCCcCCCccceeE-------EeccCeEEEeccc------cCCcchh--------------
Confidence            457788999999999999766  4678876664       6888999999994      22 2211              


Q ss_pred             cccccCCCCCCCccccccCCccceEEEecCCcEEEEeCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCC
Q 042680          174 TQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPR  253 (530)
Q Consensus       174 t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~  253 (530)
                                   +    +.-|                .+.|+||.++++|+ ++. .++++  .|++|.- |..     
T Consensus       149 -------------q----F~HY----------------kD~W~fd~~trkwe-ql~-~~g~P--S~RSGHR-Mva-----  185 (521)
T KOG1230|consen  149 -------------Q----FHHY----------------KDLWLFDLKTRKWE-QLE-FGGGP--SPRSGHR-MVA-----  185 (521)
T ss_pred             -------------h----hhhh----------------hheeeeeeccchhe-eec-cCCCC--CCCccce-eEE-----
Confidence                         0    1112                34578999999998 453 34332  3445553 321     


Q ss_pred             CCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec--C--CCCccccceeeeecCCeEEEEcC
Q 042680          254 DTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE--K--MPAPRTMADGVLLPNGEVLIING  329 (530)
Q Consensus       254 ~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~--~--M~~~R~~~~~vvLpdG~VlViGG  329 (530)
                           ++.+++++||.... ..       .+.-.+.+.+||+.  +-+|+..  +  -|.+|+.+++.+.|+|.|+|-||
T Consensus       186 -----wK~~lilFGGFhd~-nr-------~y~YyNDvy~FdLd--tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG  250 (521)
T KOG1230|consen  186 -----WKRQLILFGGFHDS-NR-------DYIYYNDVYAFDLD--TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG  250 (521)
T ss_pred             -----eeeeEEEEcceecC-CC-------ceEEeeeeEEEecc--ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence                 68999999997521 11       12346789999997  4899874  3  48999999999999999999999


Q ss_pred             CCCCCCCcccCCCC--CcccEEecCCCCCC--CceEEecCC---CCCCcccccceecCCCeEEEcCCC
Q 042680          330 ADLGSGGWHCADKP--SLKPMLYRPNAPEG--QRFAELAPT---DIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       330 ~~~g~~g~~~~~~p--~~~~eiYDP~t~~g--~~Wt~la~~---~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      +.+-..- -..+..  .....+-+|+.+..  -.|+.+.+.   +.||...|+++- ++++-|..||-
T Consensus       251 YsK~~~k-K~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va-~n~kal~FGGV  316 (521)
T KOG1230|consen  251 YSKQRVK-KDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVA-KNHKALFFGGV  316 (521)
T ss_pred             hhHhhhh-hhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEe-cCCceEEecce
Confidence            8631100 001111  12345567776322  267777654   678999997765 89999999994

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.83  E-value=9.2e-08  Score=101.10  Aligned_cols=277  Identities=17%  Similarity=0.209  Sum_probs=164.1

Q ss_pred             CCcEEEccCCc----chheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCC
Q 042680           34 LGSWELISQNA----GISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKN  109 (530)
Q Consensus        34 ~g~w~~~~~~~----~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~  109 (530)
                      .=+|..+...+    ..+.-|-++. ...-++||||.+.|-                           ...--.|+..+|
T Consensus        16 ~~rWrrV~~~tGPvPrpRHGHRAVa-ikELiviFGGGNEGi---------------------------iDELHvYNTatn   67 (830)
T KOG4152|consen   16 VVRWRRVQQSTGPVPRPRHGHRAVA-IKELIVIFGGGNEGI---------------------------IDELHVYNTATN   67 (830)
T ss_pred             ccceEEEecccCCCCCccccchhee-eeeeEEEecCCcccc---------------------------hhhhhhhccccc
Confidence            45799887633    3455666666 567788888864331                           012337899999


Q ss_pred             cEEEcccc--CCcccccceeccCCcEEEccC-CeEEEeccCCC---CcEEEE-cCCCCCCCceEEeccccccccccCCCC
Q 042680          110 AVKALKVQ--SDTWCSSGGLSADGRLVMLSD-GSFLVYGGRDA---FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPG  182 (530)
Q Consensus       110 ~w~~l~~~--~~~~~~~~~~l~dG~l~~L~d-G~v~VvGG~~~---~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~  182 (530)
                      +|..=+.-  ...-|+...|        +.| .||||+||.-.   .+-|.| -+.. .|+|-..-|-   +..    .+
T Consensus        68 qWf~PavrGDiPpgcAA~Gf--------vcdGtrilvFGGMvEYGkYsNdLYELQas-RWeWkrlkp~---~p~----nG  131 (830)
T KOG4152|consen   68 QWFAPAVRGDIPPGCAAFGF--------VCDGTRILVFGGMVEYGKYSNDLYELQAS-RWEWKRLKPK---TPK----NG  131 (830)
T ss_pred             eeecchhcCCCCCchhhcce--------EecCceEEEEccEeeeccccchHHHhhhh-hhhHhhcCCC---CCC----CC
Confidence            99865443  2455665555        234 59999999642   233444 2211 2445433331   110    01


Q ss_pred             CCCccccccCCccceEEEecCCcEEEEeCceEEEEeCCCCe--------------------EEEEc--cCCCCCCCccCC
Q 042680          183 NPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANK--------------------IIREF--PQLPGGARSYPA  240 (530)
Q Consensus       183 ~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~~~e~yDp~tn~--------------------w~~~~--p~mp~~~r~yp~  240 (530)
                      +      .+...--|.|.+...|.|+|||-.-+.=||++|-                    |...+  -++| .+|.   
T Consensus       132 ~------pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P-~pRE---  201 (830)
T KOG4152|consen  132 P------PPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLP-PPRE---  201 (830)
T ss_pred             C------CCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCC-CCcc---
Confidence            1      1222334778899999999999433333555441                    32100  0112 1343   


Q ss_pred             CceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCcccccee
Q 042680          241 TGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTMADG  316 (530)
Q Consensus       241 ~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~~~~  316 (530)
                      ++++|++-      +-+.-..|++|.||.. +.            -+.+...+|++  +-.|...    --|.+|..|++
T Consensus       202 SHTAViY~------eKDs~~skmvvyGGM~-G~------------RLgDLW~Ldl~--Tl~W~kp~~~G~~PlPRSLHsa  260 (830)
T KOG4152|consen  202 SHTAVIYT------EKDSKKSKMVVYGGMS-GC------------RLGDLWTLDLD--TLTWNKPSLSGVAPLPRSLHSA  260 (830)
T ss_pred             cceeEEEE------eccCCcceEEEEcccc-cc------------cccceeEEecc--eeecccccccCCCCCCcccccc
Confidence            35666542      1112367999999986 22            24566778876  4789763    35788999999


Q ss_pred             eeecCCeEEEEcCCCC------CCCCcccCCCCCcccEEecCCCCCCCceEEec-------CCCCCCcccccceecCCCe
Q 042680          317 VLLPNGEVLIINGADL------GSGGWHCADKPSLKPMLYRPNAPEGQRFAELA-------PTDIPRMYHSVANLLPDGK  383 (530)
Q Consensus       317 vvLpdG~VlViGG~~~------g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la-------~~~~~R~yHS~a~LLpdGr  383 (530)
                      ++. ..|+||.||.--      ..+--+..+.-..+.-+++-++.   +|+.+-       ..+.+|..|+++.+  +.|
T Consensus       261 ~~I-GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~---~W~tl~~d~~ed~tiPR~RAGHCAvAi--gtR  334 (830)
T KOG4152|consen  261 TTI-GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM---AWETLLMDTLEDNTIPRARAGHCAVAI--GTR  334 (830)
T ss_pred             eee-cceeEEecceeeeeccccccccccceeeeccceeeeeecch---heeeeeeccccccccccccccceeEEe--ccE
Confidence            876 999999999520      01100111222345678999999   998642       24566888987777  999


Q ss_pred             EEEcCCCC
Q 042680          384 VFVGGSND  391 (530)
Q Consensus       384 Vlv~GG~~  391 (530)
                      +|+=-|.+
T Consensus       335 lYiWSGRD  342 (830)
T KOG4152|consen  335 LYIWSGRD  342 (830)
T ss_pred             EEEEeccc
Confidence            99988743

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.78  E-value=1.3e-07  Score=98.03  Aligned_cols=164  Identities=16%  Similarity=0.262  Sum_probs=112.8

Q ss_pred             eEEEec-CCcEEEEeC-----------ceEEEEeCCCCeEEEEcc-CCCCCCCccCCCceEeeccCCCCCCCCCCCCcEE
Q 042680          197 FVYLLP-DGNVYVFAN-----------NRSVVHDPKANKIIREFP-QLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEV  263 (530)
Q Consensus       197 ~~~llp-~G~lfv~Gg-----------~~~e~yDp~tn~w~~~~p-~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI  263 (530)
                      .+++-| ...|++|||           ++-..||.++++|.+... +-| .+|+.   +.+|..|           .+.+
T Consensus        71 sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P-~pRss---hq~va~~-----------s~~l  135 (521)
T KOG1230|consen   71 SLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAP-PPRSS---HQAVAVP-----------SNIL  135 (521)
T ss_pred             ceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCc-CCCcc---ceeEEec-----------cCeE
Confidence            344555 458999998           356889999999984332 212 13442   3344333           4799


Q ss_pred             EEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec---CCCCccccceeeeecCCeEEEEcCCCCCCCCcccC
Q 042680          264 LICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE---KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCA  340 (530)
Q Consensus       264 ~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~---~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~  340 (530)
                      +++||--....      .......+....+|..  +.+|+..   .-|.+|+.|-||+- ..+++|+||...-...|.  
T Consensus       136 ~~fGGEfaSPn------q~qF~HYkD~W~fd~~--trkweql~~~g~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~--  204 (521)
T KOG1230|consen  136 WLFGGEFASPN------QEQFHHYKDLWLFDLK--TRKWEQLEFGGGPSPRSGHRMVAW-KRQLILFGGFHDSNRDYI--  204 (521)
T ss_pred             EEeccccCCcc------hhhhhhhhheeeeeec--cchheeeccCCCCCCCccceeEEe-eeeEEEEcceecCCCceE--
Confidence            99999531110      0111234567788887  5999975   47999999999986 899999999763222221  


Q ss_pred             CCCCcccEEecCCCCCCCceEEecCC---CCCCcccccceecCCCeEEEcCCCCC
Q 042680          341 DKPSLKPMLYRPNAPEGQRFAELAPT---DIPRMYHSVANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       341 ~~p~~~~eiYDP~t~~g~~Wt~la~~---~~~R~yHS~a~LLpdGrVlv~GG~~~  392 (530)
                        -...+.+||-++=   +|+.+.+.   +.||..|..++- |+|.|+|-||+.-
T Consensus       205 --YyNDvy~FdLdty---kW~Klepsga~PtpRSGcq~~vt-pqg~i~vyGGYsK  253 (521)
T KOG1230|consen  205 --YYNDVYAFDLDTY---KWSKLEPSGAGPTPRSGCQFSVT-PQGGIVVYGGYSK  253 (521)
T ss_pred             --EeeeeEEEeccce---eeeeccCCCCCCCCCCcceEEec-CCCcEEEEcchhH
Confidence              1236889999999   99987654   689999987765 9999999999754

>PF13964 Kelch_6: Kelch motif

Probab=98.73  E-value=2.5e-08  Score=74.66  Aligned_cols=50  Identities=28%  Similarity=0.490  Sum_probs=42.7

Q ss_pred             ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCC
Q 042680          310 PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPR  370 (530)
Q Consensus       310 ~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R  370 (530)
                      +|..++++++ +|+|||+||....       ..+...+++|||+++   +|+.+++|+.||
T Consensus         1 pR~~~s~v~~-~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~---~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVV-GGKIYVFGGYDNS-------GKYSNDVERYDPETN---TWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEE-CCEEEEECCCCCC-------CCccccEEEEcCCCC---cEEECCCCCCCC
Confidence            5888888876 9999999998631       245678999999999   999999999998

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.55  E-value=3.6e-06  Score=86.40  Aligned_cols=221  Identities=18%  Similarity=0.261  Sum_probs=134.7

Q ss_pred             CCcEEEccccC--CcccccceeccCCcEEEccCCeEEEeccCCC---------CcEEEE-cCCCCCCCceEEeccccccc
Q 042680          108 KNAVKALKVQS--DTWCSSGGLSADGRLVMLSDGSFLVYGGRDA---------FSYEYV-PVEKESNKAAIAFPFLFETQ  175 (530)
Q Consensus       108 t~~w~~l~~~~--~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~---------~s~E~y-P~~~~~~~~~~~~p~l~~t~  175 (530)
                      .+.|+.++..+  +|-.+..         +..+|++||.||...         .++.+| |.++   +|. .++-    +
T Consensus        69 ~k~W~~~a~FpG~~rnqa~~---------a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~n---sW~-kl~t----~  131 (381)
T COG3055          69 GKGWTKIADFPGGARNQAVA---------AVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTN---SWH-KLDT----R  131 (381)
T ss_pred             CCCceEcccCCCcccccchh---------eeeCCeEEEeeccccCCCCCceEeeeeEEecCCCC---hhh-eecc----c
Confidence            56799998886  4433333         345999999999632         245667 9886   344 3221    1


Q ss_pred             cccCCCCCCCccccccCCccceEEEecCC-cEEEEeC-----------------------------------------ce
Q 042680          176 DFLERPGNPKGRFRLENNLYPFVYLLPDG-NVYVFAN-----------------------------------------NR  213 (530)
Q Consensus       176 d~~~~~~~~~~~~~~~~~~Yp~~~llp~G-~lfv~Gg-----------------------------------------~~  213 (530)
                             .|+.-.       -+....+++ +|+++||                                         ..
T Consensus       132 -------sP~gl~-------G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~e  197 (381)
T COG3055         132 -------SPTGLV-------GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKE  197 (381)
T ss_pred             -------cccccc-------cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccc
Confidence                   122211       233445555 9999998                                         14


Q ss_pred             EEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCC--cEE
Q 042680          214 SVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALD--DCA  291 (530)
Q Consensus       214 ~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~--s~~  291 (530)
                      +..|||.+|+|. .+-..|    -++.+|++++.           -+.++.++-|--.             |.++  -+.
T Consensus       198 v~sy~p~~n~W~-~~G~~p----f~~~aGsa~~~-----------~~n~~~lInGEiK-------------pGLRt~~~k  248 (381)
T COG3055         198 VLSYDPSTNQWR-NLGENP----FYGNAGSAVVI-----------KGNKLTLINGEIK-------------PGLRTAEVK  248 (381)
T ss_pred             ccccccccchhh-hcCcCc----ccCccCcceee-----------cCCeEEEEcceec-------------CCcccccee
Confidence            789999999997 454444    46777877753           2567777766421             2222  345


Q ss_pred             EEEcCCCCCcceec-CCCCccccc------eeeeecCCeEEEEcCCCCC-C-----CCcccCCCCC---cccEEecCCCC
Q 042680          292 RMVVTSPNPEWKIE-KMPAPRTMA------DGVLLPNGEVLIINGADLG-S-----GGWHCADKPS---LKPMLYRPNAP  355 (530)
Q Consensus       292 ~~dp~~~~~~W~~~-~M~~~R~~~------~~vvLpdG~VlViGG~~~g-~-----~g~~~~~~p~---~~~eiYDP~t~  355 (530)
                      +++....+-+|... ++|.+-...      ..-=-.+|.++|.||+..- .     .|.-.+.+.+   ..-|+|=-+.+
T Consensus       249 ~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g  328 (381)
T COG3055         249 QADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNG  328 (381)
T ss_pred             EEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCC
Confidence            56766556789886 555443221      1111248899999997631 0     1111222211   22344433477


Q ss_pred             CCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCC
Q 042680          356 EGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDND  393 (530)
Q Consensus       356 ~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~  393 (530)
                         .|..+..++.++.|-  +.+.-.++||++||....
T Consensus       329 ---~Wk~~GeLp~~l~YG--~s~~~nn~vl~IGGE~~~  361 (381)
T COG3055         329 ---SWKIVGELPQGLAYG--VSLSYNNKVLLIGGETSG  361 (381)
T ss_pred             ---ceeeecccCCCccce--EEEecCCcEEEEccccCC
Confidence               999999999999984  334458999999998655

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.55  E-value=2.9e-06  Score=87.06  Aligned_cols=229  Identities=18%  Similarity=0.220  Sum_probs=126.5

Q ss_pred             cEEEccCCcch-heeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEc
Q 042680           36 SWELISQNAGI-SAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKAL  114 (530)
Q Consensus        36 ~w~~~~~~~~v-~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l  114 (530)
                      .|+.+..=.+. +-..+... -+||+|+|++..-..+  ..            +       --...++.|||.+|+|..+
T Consensus        71 ~W~~~a~FpG~~rnqa~~a~-~~~kLyvFgG~Gk~~~--~~------------~-------~~~nd~Y~y~p~~nsW~kl  128 (381)
T COG3055          71 GWTKIADFPGGARNQAVAAV-IGGKLYVFGGYGKSVS--SS------------P-------QVFNDAYRYDPSTNSWHKL  128 (381)
T ss_pred             CceEcccCCCcccccchhee-eCCeEEEeeccccCCC--CC------------c-------eEeeeeEEecCCCChhhee
Confidence            67776543332 22222222 5899999999753211  10            1       1246789999999999999


Q ss_pred             cccCCcccccceeccCCcEEEccCCeEEEeccCCCC--------------------------------------cEEEE-
Q 042680          115 KVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAF--------------------------------------SYEYV-  155 (530)
Q Consensus       115 ~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~--------------------------------------s~E~y-  155 (530)
                      ....++--.++..      ..+.+.+|++.||.+..                                      .+..| 
T Consensus       129 ~t~sP~gl~G~~~------~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~  202 (381)
T COG3055         129 DTRSPTGLVGAST------FSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYD  202 (381)
T ss_pred             cccccccccccee------EecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccc
Confidence            8776554333322      24645599999997520                                      11223 


Q ss_pred             cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceE---EEecCCcEEEEeC------c--eEEEEeCC--CC
Q 042680          156 PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFV---YLLPDGNVYVFAN------N--RSVVHDPK--AN  222 (530)
Q Consensus       156 P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~---~llp~G~lfv~Gg------~--~~e~yDp~--tn  222 (530)
                      |+++   .|.                      ...++.+||++   .+.-+++|.++-|      +  .+.++|..  .-
T Consensus       203 p~~n---~W~----------------------~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~  257 (381)
T COG3055         203 PSTN---QWR----------------------NLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNL  257 (381)
T ss_pred             cccc---hhh----------------------hcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCce
Confidence            3332   111                      11124455553   2223555666655      2  24455655  34


Q ss_pred             eEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccccc--cc-----CCcEEEEEc
Q 042680          223 KIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFV--NA-----LDDCARMVV  295 (530)
Q Consensus       223 ~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~--~a-----~~s~~~~dp  295 (530)
                      +|. .++++|.. .....-|-+=        +-..+.+++++|.||.+-.....+..++.+.  +.     .+.+..+| 
T Consensus       258 ~w~-~l~~lp~~-~~~~~eGvAG--------af~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-  326 (381)
T COG3055         258 KWL-KLSDLPAP-IGSNKEGVAG--------AFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-  326 (381)
T ss_pred             eee-eccCCCCC-CCCCccccce--------eccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc-
Confidence            787 78777742 2221111111        0122358999999997521101000011111  01     12344444 


Q ss_pred             CCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCC
Q 042680          296 TSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADL  332 (530)
Q Consensus       296 ~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~  332 (530)
                         ++.|+.. .||.++.++.++.. +++||+|||...
T Consensus       327 ---~g~Wk~~GeLp~~l~YG~s~~~-nn~vl~IGGE~~  360 (381)
T COG3055         327 ---NGSWKIVGELPQGLAYGVSLSY-NNKVLLIGGETS  360 (381)
T ss_pred             ---CCceeeecccCCCccceEEEec-CCcEEEEccccC
Confidence               5899998 99999999998875 899999999864

>smart00612 Kelch Kelch domain

Probab=98.37  E-value=3.9e-07  Score=66.18  Aligned_cols=45  Identities=22%  Similarity=0.406  Sum_probs=38.0

Q ss_pred             eEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCccccccee
Q 042680          323 EVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANL  378 (530)
Q Consensus       323 ~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~L  378 (530)
                      +|||+||...        ......+|+|||.++   +|+.+++|+.+|.+|+++++
T Consensus         1 ~iyv~GG~~~--------~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~   45 (47)
T smart00612        1 KIYVVGGFDG--------GQRLKSVEVYDPETN---KWTPLPSMPTPRSGHGVAVI   45 (47)
T ss_pred             CEEEEeCCCC--------CceeeeEEEECCCCC---eEccCCCCCCccccceEEEe
Confidence            5899999752        123567899999999   99999999999999998776

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.36  E-value=6.8e-06  Score=87.26  Aligned_cols=204  Identities=19%  Similarity=0.323  Sum_probs=127.3

Q ss_pred             CCeEEEeccCCC---CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeC--
Q 042680          138 DGSFLVYGGRDA---FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN--  211 (530)
Q Consensus       138 dG~v~VvGG~~~---~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg--  211 (530)
                      .--|+|+||-+.   .....| .+++   +|  .+|-..  .|      -+...       -.|.++...-+||+|||  
T Consensus        42 kELiviFGGGNEGiiDELHvYNTatn---qW--f~Pavr--GD------iPpgc-------AA~GfvcdGtrilvFGGMv  101 (830)
T KOG4152|consen   42 KELIVIFGGGNEGIIDELHVYNTATN---QW--FAPAVR--GD------IPPGC-------AAFGFVCDGTRILVFGGMV  101 (830)
T ss_pred             eeeEEEecCCcccchhhhhhhccccc---ee--ecchhc--CC------CCCch-------hhcceEecCceEEEEccEe
Confidence            566888898764   245566 6654   34  333221  11      12111       13567777889999999  


Q ss_pred             ----ceEEEEeCCCCeEEE-Ec-cCCC-CCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccccc
Q 042680          212 ----NRSVVHDPKANKIIR-EF-PQLP-GGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFV  284 (530)
Q Consensus       212 ----~~~e~yDp~tn~w~~-~~-p~mp-~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~  284 (530)
                          .+-++|....-+|.. .+ |..| .++.-.|+-|.+..|           +..|-|++||-..+...    ...+.
T Consensus       102 EYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl-----------~gnKcYlFGGLaNdseD----pknNv  166 (830)
T KOG4152|consen  102 EYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSL-----------VGNKCYLFGGLANDSED----PKNNV  166 (830)
T ss_pred             eeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEE-----------eccEeEEeccccccccC----ccccc
Confidence                245778877777751 22 2222 123335666666543           47899999997432211    11223


Q ss_pred             c-cCCcEEEEEcCCCC--Ccceec----CCCCccccceeeeec-----CCeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680          285 N-ALDDCARMVVTSPN--PEWKIE----KMPAPRTMADGVLLP-----NGEVLIINGADLGSGGWHCADKPSLKPMLYRP  352 (530)
Q Consensus       285 ~-a~~s~~~~dp~~~~--~~W~~~----~M~~~R~~~~~vvLp-----dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP  352 (530)
                      | -+++...+++....  -.|...    .+|.+|-.|.+|+.-     .-|++|.||.. |..        +.....-|-
T Consensus       167 PrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~-G~R--------LgDLW~Ldl  237 (830)
T KOG4152|consen  167 PRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS-GCR--------LGDLWTLDL  237 (830)
T ss_pred             chhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc-ccc--------ccceeEEec
Confidence            3 46777777765311  258762    689999999999872     23899999986 432        224456677


Q ss_pred             CCCCCCceEEe---cCCCCCCcccccceecCCCeEEEcCCC
Q 042680          353 NAPEGQRFAEL---APTDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       353 ~t~~g~~Wt~l---a~~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      ++-   .|++.   .-.+.||.-||+.++  ..|.||.||-
T Consensus       238 ~Tl---~W~kp~~~G~~PlPRSLHsa~~I--GnKMyvfGGW  273 (830)
T KOG4152|consen  238 DTL---TWNKPSLSGVAPLPRSLHSATTI--GNKMYVFGGW  273 (830)
T ss_pred             cee---ecccccccCCCCCCcccccceee--cceeEEecce
Confidence            777   78742   344678999998777  9999999995

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.33  E-value=4.2e-07  Score=66.79  Aligned_cols=47  Identities=26%  Similarity=0.532  Sum_probs=38.8

Q ss_pred             ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCC
Q 042680          310 PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD  367 (530)
Q Consensus       310 ~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~  367 (530)
                      +|..+.++++ +++|||+||...       ...+..++|+|||.++   +|+.+++|+
T Consensus         1 pR~~~~~~~~-~~~iyv~GG~~~-------~~~~~~~v~~yd~~~~---~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVV-GNKIYVIGGYDG-------NNQPTNSVEVYDPETN---TWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEE-TTEEEEEEEBES-------TSSBEEEEEEEETTTT---EEEEEEEES
T ss_pred             CCccCEEEEE-CCEEEEEeeecc-------cCceeeeEEEEeCCCC---EEEEcCCCC
Confidence            5888888886 999999999862       1345678999999999   999999885

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=98.10  E-value=5.6e-06  Score=61.86  Aligned_cols=36  Identities=25%  Similarity=0.494  Sum_probs=31.5

Q ss_pred             eEEEecCCcEEEEeCc--------eEEEEeCCCCeEEEEccCCCC
Q 042680          197 FVYLLPDGNVYVFANN--------RSVVHDPKANKIIREFPQLPG  233 (530)
Q Consensus       197 ~~~llp~G~lfv~Gg~--------~~e~yDp~tn~w~~~~p~mp~  233 (530)
                      +..+..+|+|||+||.        ++++||+++++|. .+++||.
T Consensus         5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~mp~   48 (50)
T PF13964_consen    5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWE-QLPPMPT   48 (50)
T ss_pred             CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEE-ECCCCCC
Confidence            5567889999999994        5799999999999 8999983

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=97.97  E-value=6.4e-06  Score=61.16  Aligned_cols=48  Identities=15%  Similarity=0.295  Sum_probs=30.0

Q ss_pred             ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCC
Q 042680          310 PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD  367 (530)
Q Consensus       310 ~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~  367 (530)
                      +|..|+++.+.+++|||+||....       .......++||++++   +|+.+++++
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~-------~~~~~d~~~~d~~~~---~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSS-------GSPLNDLWIFDIETN---TWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE--------TEE---EEEEETTTT---EEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCC-------CcccCCEEEEECCCC---EEEECCCCC
Confidence            689999999888999999998621       124567899999999   999997775

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.85  E-value=3.6e-05  Score=57.31  Aligned_cols=49  Identities=18%  Similarity=0.382  Sum_probs=35.7

Q ss_pred             ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCC
Q 042680          310 PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD  367 (530)
Q Consensus       310 ~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~  367 (530)
                      +|..|.+++ +|+||||+||...+     ........+++||++++   +|+.+++|.
T Consensus         1 ~r~~hs~~~-~~~kiyv~GG~~~~-----~~~~~~~~v~~~d~~t~---~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVV-LDGKIYVFGGYGTD-----NGGSSSNDVWVFDTETN---QWTELSPMG   49 (49)
T ss_pred             CccceEEEE-ECCEEEEECCcccC-----CCCcccceeEEEECCCC---EEeecCCCC
Confidence            566677665 59999999998111     11223457899999999   999988763

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.85  E-value=2e-05  Score=57.74  Aligned_cols=35  Identities=29%  Similarity=0.533  Sum_probs=30.9

Q ss_pred             eEEEecCCcEEEEeC--------ceEEEEeCCCCeEEEEccCCC
Q 042680          197 FVYLLPDGNVYVFAN--------NRSVVHDPKANKIIREFPQLP  232 (530)
Q Consensus       197 ~~~llp~G~lfv~Gg--------~~~e~yDp~tn~w~~~~p~mp  232 (530)
                      +..+..+++||++||        +++++||+.+|+|. .+|+||
T Consensus         5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~mp   47 (47)
T PF01344_consen    5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWE-ELPPMP   47 (47)
T ss_dssp             EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEE-EEEEES
T ss_pred             CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEE-EcCCCC
Confidence            567888999999999        36899999999999 788876

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=97.77  E-value=3.8e-05  Score=57.17  Aligned_cols=48  Identities=10%  Similarity=0.192  Sum_probs=39.2

Q ss_pred             CCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccce
Q 042680          321 NGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVAN  377 (530)
Q Consensus       321 dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~  377 (530)
                      +++|||+||....      .........+||+.++   +|+++++++.+|..|++++
T Consensus         1 g~~~~vfGG~~~~------~~~~~nd~~~~~~~~~---~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDD------GGTRLNDVWVFDLDTN---TWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCC------CCCEecCEEEEECCCC---EEEECCCCCCCccceEEEE
Confidence            5799999997621      1233567899999999   9999999999999998765

>smart00612 Kelch Kelch domain

Probab=97.76  E-value=3.6e-05  Score=55.68  Aligned_cols=46  Identities=22%  Similarity=0.406  Sum_probs=36.9

Q ss_pred             EEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCC
Q 042680          262 EVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNG  322 (530)
Q Consensus       262 kI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG  322 (530)
                      +||++||....            ..++++++|||..  ++|+.. +|+.+|..++++++ +|
T Consensus         1 ~iyv~GG~~~~------------~~~~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~-~g   47 (47)
T smart00612        1 KIYVVGGFDGG------------QRLKSVEVYDPET--NKWTPLPSMPTPRSGHGVAVI-NG   47 (47)
T ss_pred             CEEEEeCCCCC------------ceeeeEEEECCCC--CeEccCCCCCCccccceEEEe-CC
Confidence            58999997521            2467899999984  999988 99999999988876 54

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.64  E-value=0.00011  Score=54.68  Aligned_cols=37  Identities=27%  Similarity=0.478  Sum_probs=31.9

Q ss_pred             cceEEEecCCcEEEEeCc----------eEEEEeCCCCeEEEEccCCC
Q 042680          195 YPFVYLLPDGNVYVFANN----------RSVVHDPKANKIIREFPQLP  232 (530)
Q Consensus       195 Yp~~~llp~G~lfv~Gg~----------~~e~yDp~tn~w~~~~p~mp  232 (530)
                      |.|..+++++||||+||.          +.++||+.+++|. .+++||
T Consensus         3 ~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~-~~~~~g   49 (49)
T PF07646_consen    3 YGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWT-ELSPMG   49 (49)
T ss_pred             cceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEe-ecCCCC
Confidence            568889999999999995          5799999999998 777664

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=97.35  E-value=0.0004  Score=51.36  Aligned_cols=33  Identities=24%  Similarity=0.511  Sum_probs=22.1

Q ss_pred             EEecCCcEEEEeCc--------eEEEEeCCCCeEEEEccCCC
Q 042680          199 YLLPDGNVYVFANN--------RSVVHDPKANKIIREFPQLP  232 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--------~~e~yDp~tn~w~~~~p~mp  232 (530)
                      ..+.+++||++||.        ++++||+++++|+ ++++||
T Consensus         8 ~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~-~~~~~P   48 (49)
T PF13418_consen    8 VSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWT-RLPSMP   48 (49)
T ss_dssp             EEE-TTEEEEE--EEE-TEE---EEEEETTTTEEE-E--SS-
T ss_pred             EEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEE-ECCCCC
Confidence            34457999999993        6899999999999 788876

>PLN02772 guanylate kinase

Probab=97.21  E-value=0.00082  Score=71.28  Aligned_cols=70  Identities=17%  Similarity=0.231  Sum_probs=55.3

Q ss_pred             CccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE---EecCCCCCCcccccceecCCCeEE
Q 042680          309 APRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA---ELAPTDIPRMYHSVANLLPDGKVF  385 (530)
Q Consensus       309 ~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt---~la~~~~~R~yHS~a~LLpdGrVl  385 (530)
                      .+|..++++.. ++++||+||.+.+       ......+.+||+.+.   +|+   .+...+.||-.|| |+++.|.|||
T Consensus        23 ~~~~~~tav~i-gdk~yv~GG~~d~-------~~~~~~v~i~D~~t~---~W~~P~V~G~~P~~r~GhS-a~v~~~~ril   90 (398)
T PLN02772         23 KPKNRETSVTI-GDKTYVIGGNHEG-------NTLSIGVQILDKITN---NWVSPIVLGTGPKPCKGYS-AVVLNKDRIL   90 (398)
T ss_pred             CCCCcceeEEE-CCEEEEEcccCCC-------ccccceEEEEECCCC---cEecccccCCCCCCCCcce-EEEECCceEE
Confidence            37788888876 9999999997521       012346889999999   998   4678899999998 4555899999


Q ss_pred             EcCCC
Q 042680          386 VGGSN  390 (530)
Q Consensus       386 v~GG~  390 (530)
                      |.++.
T Consensus        91 v~~~~   95 (398)
T PLN02772         91 VIKKG   95 (398)
T ss_pred             EEeCC
Confidence            99875

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=97.06  E-value=0.0013  Score=48.92  Aligned_cols=46  Identities=20%  Similarity=0.411  Sum_probs=37.1

Q ss_pred             cEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeee
Q 042680          261 AEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVL  318 (530)
Q Consensus       261 gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vv  318 (530)
                      ++|||+||.+...          ...++++.+||+.  +.+|+.. ++|.+|..|++++
T Consensus         2 ~~~~vfGG~~~~~----------~~~~nd~~~~~~~--~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    2 NKLYVFGGYDDDG----------GTRLNDVWVFDLD--TNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CEEEEECCcCCCC----------CCEecCEEEEECC--CCEEEECCCCCCCccceEEEE
Confidence            6899999986211          1357889999997  5899997 9999999999875

>PRK13684 Ycf48-like protein; Provisional

Probab=96.64  E-value=1.1  Score=46.91  Aligned_cols=74  Identities=20%  Similarity=0.294  Sum_probs=43.5

Q ss_pred             CCcceecCCCCc---cccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecC-CCCCCcccc
Q 042680          299 NPEWKIEKMPAP---RTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAP-TDIPRMYHS  374 (530)
Q Consensus       299 ~~~W~~~~M~~~---R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~-~~~~R~yHS  374 (530)
                      ...|+...++..   ....+....++++++++|..  |.              +|- ..+.|++|+.+.. ...+..+..
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~--G~--------------v~~-S~d~G~tW~~~~~~~~~~~~~~~  307 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN--GT--------------LLV-SKDGGKTWEKDPVGEEVPSNFYK  307 (334)
T ss_pred             CCccccccCCccccccceeeEEEcCCCCEEEEcCC--Ce--------------EEE-eCCCCCCCeECCcCCCCCcceEE
Confidence            568987544422   22334455678999988753  21              221 2455679998653 334444444


Q ss_pred             cceecCCCeEEEcCCC
Q 042680          375 VANLLPDGKVFVGGSN  390 (530)
Q Consensus       375 ~a~LLpdGrVlv~GG~  390 (530)
                       .+...++++|++|..
T Consensus       308 -~~~~~~~~~~~~G~~  322 (334)
T PRK13684        308 -IVFLDPEKGFVLGQR  322 (334)
T ss_pred             -EEEeCCCceEEECCC
Confidence             344578899998874

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.42  E-value=4.5  Score=43.01  Aligned_cols=132  Identities=12%  Similarity=0.172  Sum_probs=68.4

Q ss_pred             cCCcEEEEeCc-eEEEEeCCCCeEEEEccC-CCCC-CCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc
Q 042680          202 PDGNVYVFANN-RSVVHDPKANKIIREFPQ-LPGG-ARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE  278 (530)
Q Consensus       202 p~G~lfv~Gg~-~~e~yDp~tn~w~~~~p~-mp~~-~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~  278 (530)
                      .+|+||+..++ ....+|+++++.....+. .|.. .+..  +...+             .++.||+..+.  +      
T Consensus       159 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~--~sP~v-------------~~~~v~~~~~~--g------  215 (394)
T PRK11138        159 SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE--SAPAT-------------AFGGAIVGGDN--G------  215 (394)
T ss_pred             ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC--CCCEE-------------ECCEEEEEcCC--C------
Confidence            48888887554 578899999863322221 1100 0111  01111             25667664432  1      


Q ss_pred             ccccccccCCcEEEEEcCCCCCcceec-CCCCc--------cccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEE
Q 042680          279 EEKRFVNALDDCARMVVTSPNPEWKIE-KMPAP--------RTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPML  349 (530)
Q Consensus       279 ~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~--------R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~ei  349 (530)
                                .+..+|+.+....|+.. ..+..        +....-++ .+|.||+.+..  |            ...+
T Consensus       216 ----------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~--g------------~l~a  270 (394)
T PRK11138        216 ----------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAYN--G------------NLVA  270 (394)
T ss_pred             ----------EEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEcC--C------------eEEE
Confidence                      23456776655678764 33321        11233343 48999986532  1            4568


Q ss_pred             ecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          350 YRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       350 YDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      +|+++. ...|+.--  ..   +.+.+  ..+|+||+...
T Consensus       271 ld~~tG-~~~W~~~~--~~---~~~~~--~~~~~vy~~~~  302 (394)
T PRK11138        271 LDLRSG-QIVWKREY--GS---VNDFA--VDGGRIYLVDQ  302 (394)
T ss_pred             EECCCC-CEEEeecC--CC---ccCcE--EECCEEEEEcC
Confidence            888765 12687521  11   12222  34899999764

>PLN02772 guanylate kinase

Probab=95.31  E-value=0.048  Score=58.10  Aligned_cols=60  Identities=15%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             CCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCccccceeeeecCCeEEEEcCCC
Q 042680          259 VDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTMADGVLLPNGEVLIINGAD  331 (530)
Q Consensus       259 ~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~~~~vvLpdG~VlViGG~~  331 (530)
                      +..++||+||.+.+.           .+.+.+.+||..  +.+|..-    .-|.+|-.|+++++-|++|||+++..
T Consensus        33 igdk~yv~GG~~d~~-----------~~~~~v~i~D~~--t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~   96 (398)
T PLN02772         33 IGDKTYVIGGNHEGN-----------TLSIGVQILDKI--TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS   96 (398)
T ss_pred             ECCEEEEEcccCCCc-----------cccceEEEEECC--CCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence            489999999986321           246778999987  5999862    68999999999999999999999743

>PF13854 Kelch_5: Kelch motif

Probab=94.33  E-value=0.089  Score=37.73  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=29.0

Q ss_pred             CCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          307 MPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       307 M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                      +|.+|..|++++. +++|||.||... .     .........+||..+
T Consensus         1 ~P~~R~~hs~~~~-~~~iyi~GG~~~-~-----~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVV-GNNIYIFGGYSG-N-----NNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEE-CCEEEEEcCccC-C-----CCCEECcEEEEECCC
Confidence            5789999999986 899999999862 1     122234566776544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=94.14  E-value=8.7  Score=40.30  Aligned_cols=77  Identities=17%  Similarity=0.301  Sum_probs=41.9

Q ss_pred             EEEEEcCCCCCcceec-CCCCcc--------ccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce
Q 042680          290 CARMVVTSPNPEWKIE-KMPAPR--------TMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF  360 (530)
Q Consensus       290 ~~~~dp~~~~~~W~~~-~M~~~R--------~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W  360 (530)
                      +..+|+.+....|+.. ..+..+        .....+ +.+++||+.+...              ...+||+++. ...|
T Consensus       202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~-~~~~~vy~~~~~g--------------~l~a~d~~tG-~~~W  265 (377)
T TIGR03300       202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV-VDGGQVYAVSYQG--------------RVAALDLRSG-RVLW  265 (377)
T ss_pred             EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE-EECCEEEEEEcCC--------------EEEEEECCCC-cEEE
Confidence            4567776545568754 322211        122323 3588888865321              4678998765 1358


Q ss_pred             EEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          361 AELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       361 t~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      +.-.     ..+.+.+  +.|++||+...
T Consensus       266 ~~~~-----~~~~~p~--~~~~~vyv~~~  287 (377)
T TIGR03300       266 KRDA-----SSYQGPA--VDDNRLYVTDA  287 (377)
T ss_pred             eecc-----CCccCce--EeCCEEEEECC
Confidence            6421     1222223  34899998764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=91.95  E-value=3.7  Score=43.67  Aligned_cols=128  Identities=16%  Similarity=0.194  Sum_probs=71.8

Q ss_pred             ecCCcEEEEeC-ceEEEEeCCCCe--EEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          201 LPDGNVYVFAN-NRSVVHDPKANK--IIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       201 lp~G~lfv~Gg-~~~e~yDp~tn~--w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      +.+|.||+.+. .....+|+++++  |.+.+..       .  ....+             .+++||++...        
T Consensus       254 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-------~--~~~~~-------------~~~~vy~~~~~--------  303 (394)
T PRK11138        254 VVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-------V--NDFAV-------------DGGRIYLVDQN--------  303 (394)
T ss_pred             EECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-------c--cCcEE-------------ECCEEEEEcCC--------
Confidence            34899998764 467889999875  5432210       1  01111             26788886431        


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEG  357 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g  357 (530)
                                ..+..+|+.+....|+...+. .+...+.++ -+|+||+....  |            ...+.|+++.. 
T Consensus       304 ----------g~l~ald~~tG~~~W~~~~~~-~~~~~sp~v-~~g~l~v~~~~--G------------~l~~ld~~tG~-  356 (394)
T PRK11138        304 ----------DRVYALDTRGGVELWSQSDLL-HRLLTAPVL-YNGYLVVGDSE--G------------YLHWINREDGR-  356 (394)
T ss_pred             ----------CeEEEEECCCCcEEEcccccC-CCcccCCEE-ECCEEEEEeCC--C------------EEEEEECCCCC-
Confidence                      125678887655678765332 233444454 49999875432  1            35677887751 


Q ss_pred             CceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          358 QRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       358 ~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      -.|+.-  ....+.+.+-++.  ||+|||..-
T Consensus       357 ~~~~~~--~~~~~~~s~P~~~--~~~l~v~t~  384 (394)
T PRK11138        357 FVAQQK--VDSSGFLSEPVVA--DDKLLIQAR  384 (394)
T ss_pred             EEEEEE--cCCCcceeCCEEE--CCEEEEEeC
Confidence            135431  1112334444444  999999854

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=91.69  E-value=18  Score=37.24  Aligned_cols=158  Identities=19%  Similarity=0.302  Sum_probs=90.9

Q ss_pred             EecCCcEEEEeC--ceEEEEeCCCC------eEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccC
Q 042680          200 LLPDGNVYVFAN--NRSVVHDPKAN------KIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVR  271 (530)
Q Consensus       200 llp~G~lfv~Gg--~~~e~yDp~tn------~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~  271 (530)
                      -.|+|+..+.||  +..-+|+..+.      ...+++   + +.+.|-  ...-.+           .++.|+.--|   
T Consensus       105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l---~-gHtgyl--ScC~f~-----------dD~~ilT~SG---  164 (343)
T KOG0286|consen  105 YSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL---A-GHTGYL--SCCRFL-----------DDNHILTGSG---  164 (343)
T ss_pred             ECCCCCeEEecCcCceeEEEecccccccccceeeeee---c-Ccccee--EEEEEc-----------CCCceEecCC---
Confidence            457999988998  56788998865      222222   3 234552  222222           1566654333   


Q ss_pred             CccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeec-CCeEEEEcCCCCCCCCcccCCCCCcccEE
Q 042680          272 EGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLP-NGEVLIINGADLGSGGWHCADKPSLKPML  349 (530)
Q Consensus       272 ~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLp-dG~VlViGG~~~g~~g~~~~~~p~~~~ei  349 (530)
                                     ..+|...|++.  .+=..+ .=+.+-++.=. +.| |++.||.||.+.             ...+
T Consensus       165 ---------------D~TCalWDie~--g~~~~~f~GH~gDV~sls-l~p~~~ntFvSg~cD~-------------~akl  213 (343)
T KOG0286|consen  165 ---------------DMTCALWDIET--GQQTQVFHGHTGDVMSLS-LSPSDGNTFVSGGCDK-------------SAKL  213 (343)
T ss_pred             ---------------CceEEEEEccc--ceEEEEecCCcccEEEEe-cCCCCCCeEEeccccc-------------ceee
Confidence                           13688888874  333333 33333344333 347 999999999862             4678


Q ss_pred             ecCCCCCC-CceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCC--CCcceEEEEcCCCCCCc
Q 042680          350 YRPNAPEG-QRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKF--PTELRLEKFTPPYLAPE  418 (530)
Q Consensus       350 YDP~t~~g-~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~--~t~~~vE~y~Ppyl~~~  418 (530)
                      ||-....- |+|..    .  -+.-.+....|+|--++.|+++... .   -|  -....+++|.++-..-|
T Consensus       214 WD~R~~~c~qtF~g----h--esDINsv~ffP~G~afatGSDD~tc-R---lyDlRaD~~~a~ys~~~~~~g  275 (343)
T KOG0286|consen  214 WDVRSGQCVQTFEG----H--ESDINSVRFFPSGDAFATGSDDATC-R---LYDLRADQELAVYSHDSIICG  275 (343)
T ss_pred             eeccCcceeEeecc----c--ccccceEEEccCCCeeeecCCCcee-E---EEeecCCcEEeeeccCcccCC
Confidence            88877611 22321    1  1112345567999999999975421 1   12  12346899997776544

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=91.06  E-value=6.9  Score=38.19  Aligned_cols=154  Identities=18%  Similarity=0.179  Sum_probs=82.1

Q ss_pred             CCcEEEEeCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccc
Q 042680          203 DGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKR  282 (530)
Q Consensus       203 ~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~  282 (530)
                      ||-|.+.......++||.|++|. .+|+.+. ++.++... ...+-..+  ..   .+=||+.+.... ..         
T Consensus         5 nGLlc~~~~~~~~V~NP~T~~~~-~LP~~~~-~~~~~~~~-~~~~G~d~--~~---~~YKVv~~~~~~-~~---------   66 (230)
T TIGR01640         5 DGLICFSYGKRLVVWNPSTGQSR-WLPTPKS-RRSNKESD-TYFLGYDP--IE---KQYKVLCFSDRS-GN---------   66 (230)
T ss_pred             ceEEEEecCCcEEEECCCCCCEE-ecCCCCC-cccccccc-eEEEeecc--cC---CcEEEEEEEeec-CC---------
Confidence            56665555567789999999998 7876442 22222111 11111111  11   244777775431 10         


Q ss_pred             ccccCCcEEEEEcCCCCCcceec-CCCC-ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce
Q 042680          283 FVNALDDCARMVVTSPNPEWKIE-KMPA-PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF  360 (530)
Q Consensus       283 ~~~a~~s~~~~dp~~~~~~W~~~-~M~~-~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W  360 (530)
                        .....+++|+..+  +.|+.. ..+. -......+.+ ||.+|.+.-...+        ++......||-.+.   +|
T Consensus        67 --~~~~~~~Vys~~~--~~Wr~~~~~~~~~~~~~~~v~~-~G~lyw~~~~~~~--------~~~~~IvsFDl~~E---~f  130 (230)
T TIGR01640        67 --RNQSEHQVYTLGS--NSWRTIECSPPHHPLKSRGVCI-NGVLYYLAYTLKT--------NPDYFIVSFDVSSE---RF  130 (230)
T ss_pred             --CCCccEEEEEeCC--CCccccccCCCCccccCCeEEE-CCEEEEEEEECCC--------CCcEEEEEEEcccc---eE
Confidence              0124689999874  799875 2221 1111224554 9999988642211        11225788999999   99


Q ss_pred             EEecCCCCCCc-cc-ccceecCCCeEEEcCCC
Q 042680          361 AELAPTDIPRM-YH-SVANLLPDGKVFVGGSN  390 (530)
Q Consensus       361 t~la~~~~~R~-yH-S~a~LLpdGrVlv~GG~  390 (530)
                      ...-+++..+. .+ ...+..-+|++-++...
T Consensus       131 ~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~  162 (230)
T TIGR01640       131 KEFIPLPCGNSDSVDYLSLINYKGKLAVLKQK  162 (230)
T ss_pred             eeeeecCccccccccceEEEEECCEEEEEEec
Confidence            95223333332 11 11222227888776653

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=89.95  E-value=6  Score=38.86  Aligned_cols=156  Identities=18%  Similarity=0.246  Sum_probs=78.7

Q ss_pred             cCCcEEEEeCceEEEEeCCCCeEEEEccCCCCC--CCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccc
Q 042680          202 PDGNVYVFANNRSVVHDPKANKIIREFPQLPGG--ARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEE  279 (530)
Q Consensus       202 p~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~--~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~  279 (530)
                      ++|++|+.......++|+.++++. .+...+..  ....|. ..++ -           .+|.||+.--.......    
T Consensus        50 ~~g~l~v~~~~~~~~~d~~~g~~~-~~~~~~~~~~~~~~~N-D~~v-d-----------~~G~ly~t~~~~~~~~~----  111 (246)
T PF08450_consen   50 PDGRLYVADSGGIAVVDPDTGKVT-VLADLPDGGVPFNRPN-DVAV-D-----------PDGNLYVTDSGGGGASG----  111 (246)
T ss_dssp             TTSEEEEEETTCEEEEETTTTEEE-EEEEEETTCSCTEEEE-EEEE-------------TTS-EEEEEECCBCTTC----
T ss_pred             cCCEEEEEEcCceEEEecCCCcEE-EEeeccCCCcccCCCc-eEEE-c-----------CCCCEEEEecCCCcccc----
Confidence            689999998888888899999987 44443211  122221 1122 1           37888875321101000    


Q ss_pred             cccccccCCcEEEEEcCCCCCcceec--CCCCccccceeeeecCCeE-EEEcCCCCCCCCcccCCCCCcccEEecCCCCC
Q 042680          280 EKRFVNALDDCARMVVTSPNPEWKIE--KMPAPRTMADGVLLPNGEV-LIINGADLGSGGWHCADKPSLKPMLYRPNAPE  356 (530)
Q Consensus       280 ~~~~~~a~~s~~~~dp~~~~~~W~~~--~M~~~R~~~~~vvLpdG~V-lViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~  356 (530)
                           .....+.|+++.   .+.+..  .|..+.   ..+.-|||+. |+..-..             .....||+..+.
T Consensus       112 -----~~~g~v~~~~~~---~~~~~~~~~~~~pN---Gi~~s~dg~~lyv~ds~~-------------~~i~~~~~~~~~  167 (246)
T PF08450_consen  112 -----IDPGSVYRIDPD---GKVTVVADGLGFPN---GIAFSPDGKTLYVADSFN-------------GRIWRFDLDADG  167 (246)
T ss_dssp             -----GGSEEEEEEETT---SEEEEEEEEESSEE---EEEEETTSSEEEEEETTT-------------TEEEEEEEETTT
T ss_pred             -----ccccceEEECCC---CeEEEEecCccccc---ceEECCcchheeeccccc-------------ceeEEEeccccc
Confidence                 001346778765   333332  344332   3344588974 4543221             257788887652


Q ss_pred             CCceE---EecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCC
Q 042680          357 GQRFA---ELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPP  413 (530)
Q Consensus       357 g~~Wt---~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Pp  413 (530)
                      + +++   .+........+.--.++-.+|+|||+.-.             ..+|.+|+|.
T Consensus       168 ~-~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-------------~~~I~~~~p~  213 (246)
T PF08450_consen  168 G-ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-------------GGRIVVFDPD  213 (246)
T ss_dssp             C-CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-------------TTEEEEEETT
T ss_pred             c-ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-------------CCEEEEECCC
Confidence            2 232   22222222111222445679999998321             1257888886

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13854 Kelch_5: Kelch motif

Probab=89.76  E-value=0.27  Score=35.23  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             CCCCCcccccceecCCCeEEEcCCCCC
Q 042680          366 TDIPRMYHSVANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       366 ~~~~R~yHS~a~LLpdGrVlv~GG~~~  392 (530)
                      ++.+|..||+++.  +++|||.||...
T Consensus         1 ~P~~R~~hs~~~~--~~~iyi~GG~~~   25 (42)
T PF13854_consen    1 IPSPRYGHSAVVV--GNNIYIFGGYSG   25 (42)
T ss_pred             CCCCccceEEEEE--CCEEEEEcCccC
Confidence            3678999998887  999999999873

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=88.75  E-value=17  Score=39.50  Aligned_cols=177  Identities=15%  Similarity=0.213  Sum_probs=99.9

Q ss_pred             cCceeEEEEeCCCCcEEE-ccccCCcccccceeccCCcEEEccCCeEEEeccCCCCcEEEEcCCCCCCCceEEecccccc
Q 042680           96 DCWCHSIFYDYNKNAVKA-LKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFET  174 (530)
Q Consensus        96 ~~~a~~~~yDp~t~~w~~-l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~yP~~~~~~~~~~~~p~l~~t  174 (530)
                      .|++...+|+..+.+.+. ++.+.+.-|+.. |        -.||+++..|+..+ -+.+|--+.    .. .   | ++
T Consensus        45 t~S~rvqly~~~~~~~~k~~srFk~~v~s~~-f--------R~DG~LlaaGD~sG-~V~vfD~k~----r~-i---L-R~  105 (487)
T KOG0310|consen   45 TSSVRVQLYSSVTRSVRKTFSRFKDVVYSVD-F--------RSDGRLLAAGDESG-HVKVFDMKS----RV-I---L-RQ  105 (487)
T ss_pred             ecccEEEEEecchhhhhhhHHhhccceeEEE-e--------ecCCeEEEccCCcC-cEEEecccc----HH-H---H-HH
Confidence            378888999988877655 455555555433 3        23889999887654 244442110    00 1   1 10


Q ss_pred             ccccCCCCCCCccccccCCccce---EEEecCCcEEEEeCce--EEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccC
Q 042680          175 QDFLERPGNPKGRFRLENNLYPF---VYLLPDGNVYVFANNR--SVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPL  249 (530)
Q Consensus       175 ~d~~~~~~~~~~~~~~~~~~Yp~---~~llp~G~lfv~Gg~~--~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl  249 (530)
                      .+               ....|.   -+..-++.+|++|+..  ...||..+.....++   . +...|-++++  +.| 
T Consensus       106 ~~---------------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l---~-~htDYVR~g~--~~~-  163 (487)
T KOG0310|consen  106 LY---------------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL---S-GHTDYVRCGD--ISP-  163 (487)
T ss_pred             Hh---------------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe---c-CCcceeEeec--ccc-
Confidence            00               001121   1233489999999853  566777777653223   3 2456655554  334 


Q ss_pred             CCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcC
Q 042680          250 YLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIING  329 (530)
Q Consensus       250 ~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG  329 (530)
                               .++.|++.||.+ +                .+-.||.... ..|..+ +...----+.+.||.|.+++.-|
T Consensus       164 ---------~~~hivvtGsYD-g----------------~vrl~DtR~~-~~~v~e-lnhg~pVe~vl~lpsgs~iasAg  215 (487)
T KOG0310|consen  164 ---------ANDHIVVTGSYD-G----------------KVRLWDTRSL-TSRVVE-LNHGCPVESVLALPSGSLIASAG  215 (487)
T ss_pred             ---------CCCeEEEecCCC-c----------------eEEEEEeccC-CceeEE-ecCCCceeeEEEcCCCCEEEEcC
Confidence                     368999999987 2                2345676542 256665 22221223457789987777665


Q ss_pred             CCCCCCCcccCCCCCcccEEecCCCC
Q 042680          330 ADLGSGGWHCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       330 ~~~g~~g~~~~~~p~~~~eiYDP~t~  355 (530)
                      .+              ++-+||-.+.
T Consensus       216 Gn--------------~vkVWDl~~G  227 (487)
T KOG0310|consen  216 GN--------------SVKVWDLTTG  227 (487)
T ss_pred             CC--------------eEEEEEecCC
Confidence            33              4678887765

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=87.82  E-value=35  Score=35.01  Aligned_cols=123  Identities=22%  Similarity=0.252  Sum_probs=72.3

Q ss_pred             EEEecCCcEEEE--eCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          198 VYLLPDGNVYVF--ANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       198 ~~llp~G~lfv~--Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      +.+.|||.|++.  .|+..-+.||.+..-. .+|. |.....-.+ ...+    .        --+++-+.   .     
T Consensus       194 i~atpdGsvwyaslagnaiaridp~~~~ae-v~p~-P~~~~~gsR-riws----d--------pig~~wit---t-----  250 (353)
T COG4257         194 ICATPDGSVWYASLAGNAIARIDPFAGHAE-VVPQ-PNALKAGSR-RIWS----D--------PIGRAWIT---T-----  250 (353)
T ss_pred             eEECCCCcEEEEeccccceEEcccccCCcc-eecC-CCccccccc-cccc----C--------ccCcEEEe---c-----
Confidence            457789999998  7787788899987543 3432 322111000 0011    0        14666665   1     


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceecCCC--CccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIEKMP--APRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~--~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                               ....++.+|||..  ..|..=++|  .+|-+.--|- -.|+|+..-=.             ......|||+
T Consensus       251 ---------wg~g~l~rfdPs~--~sW~eypLPgs~arpys~rVD-~~grVW~sea~-------------agai~rfdpe  305 (353)
T COG4257         251 ---------WGTGSLHRFDPSV--TSWIEYPLPGSKARPYSMRVD-RHGRVWLSEAD-------------AGAIGRFDPE  305 (353)
T ss_pred             ---------cCCceeeEeCccc--ccceeeeCCCCCCCcceeeec-cCCcEEeeccc-------------cCceeecCcc
Confidence                     1234578999985  669875554  4565543332 46788873211             1246789999


Q ss_pred             CCCCCceEEecCCCCCCcccc
Q 042680          354 APEGQRFAELAPTDIPRMYHS  374 (530)
Q Consensus       354 t~~g~~Wt~la~~~~~R~yHS  374 (530)
                      +.   +|+++   +++|-...
T Consensus       306 ta---~ftv~---p~pr~n~g  320 (353)
T COG4257         306 TA---RFTVL---PIPRPNSG  320 (353)
T ss_pred             cc---eEEEe---cCCCCCCC
Confidence            99   99986   45565433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=86.41  E-value=21  Score=34.21  Aligned_cols=141  Identities=16%  Similarity=0.261  Sum_probs=73.6

Q ss_pred             EecCCcEEEE-eCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc
Q 042680          200 LLPDGNVYVF-ANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE  278 (530)
Q Consensus       200 llp~G~lfv~-Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~  278 (530)
                      +..+|+||+. +.....+||..+++...... +++.  ..   ..-+ .           .+++||+....         
T Consensus        33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~~~~--~~---~~~~-~-----------~~~~v~v~~~~---------   85 (238)
T PF13360_consen   33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFD-LPGP--IS---GAPV-V-----------DGGRVYVGTSD---------   85 (238)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTSEEEEEEE-CSSC--GG---SGEE-E-----------ETTEEEEEETT---------
T ss_pred             EEeCCEEEEEcCCCEEEEEECCCCCEEEEee-cccc--cc---ceee-e-----------cccccccccce---------
Confidence            3468889988 55678999999986442232 1321  11   1111 1           36788776521         


Q ss_pred             ccccccccCCcEEEEEcCCCCCccee-c-CCCCcccccee-eeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680          279 EEKRFVNALDDCARMVVTSPNPEWKI-E-KMPAPRTMADG-VLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       279 ~~~~~~~a~~s~~~~dp~~~~~~W~~-~-~M~~~R~~~~~-vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~  355 (530)
                               ..+.++|..+....|+. . .-+..+....+ ..+-++++++ +...             .....+|+++.
T Consensus        86 ---------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------g~l~~~d~~tG  142 (238)
T PF13360_consen   86 ---------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV-GTSS-------------GKLVALDPKTG  142 (238)
T ss_dssp             ---------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE-EETC-------------SEEEEEETTTT
T ss_pred             ---------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEE-Eecc-------------CcEEEEecCCC
Confidence                     13567887766678994 4 32333322222 2222445554 4322             14678999876


Q ss_pred             CCCceEEecCCCCC-C----cc-cccceecCCCeEEEcCCCC
Q 042680          356 EGQRFAELAPTDIP-R----MY-HSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       356 ~g~~Wt~la~~~~~-R----~y-HS~a~LLpdGrVlv~GG~~  391 (530)
                      . ..|+.-...+.. -    .. .....++.+|+||++.+..
T Consensus       143 ~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g  183 (238)
T PF13360_consen  143 K-LLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG  183 (238)
T ss_dssp             E-EEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred             c-EEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence            1 147653322110 0    00 1133445578999988754

...

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=84.26  E-value=42  Score=32.57  Aligned_cols=118  Identities=16%  Similarity=0.239  Sum_probs=63.1

Q ss_pred             EEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccC
Q 042680          199 YLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVR  271 (530)
Q Consensus       199 ~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~  271 (530)
                      -+..+|.||.+...       ....||..+.+|. +.-++|... .... ....+..          ++|++-++.... 
T Consensus        98 ~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~-~~i~~P~~~-~~~~-~~~~L~~----------~~G~L~~v~~~~-  163 (230)
T TIGR01640        98 GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFK-EFIPLPCGN-SDSV-DYLSLIN----------YKGKLAVLKQKK-  163 (230)
T ss_pred             eEEECCEEEEEEEECCCCCcEEEEEEEcccceEe-eeeecCccc-cccc-cceEEEE----------ECCEEEEEEecC-
Confidence            45679999998741       4788999999997 322345321 1111 1111211          367766654321 


Q ss_pred             CccccccccccccccCCcEEEEEcCCC-CCcceec---CCCCccccc----eeeeecCCeEEEEcCCCCCCCCcccCCCC
Q 042680          272 EGLYLGEEEKRFVNALDDCARMVVTSP-NPEWKIE---KMPAPRTMA----DGVLLPNGEVLIINGADLGSGGWHCADKP  343 (530)
Q Consensus       272 ~~~~~~~~~~~~~~a~~s~~~~dp~~~-~~~W~~~---~M~~~R~~~----~~vvLpdG~VlViGG~~~g~~g~~~~~~p  343 (530)
                      .              ...++....++. ...|+..   +|+..+.+.    -..+.-+|+|+++-....           
T Consensus       164 ~--------------~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~-----------  218 (230)
T TIGR01640       164 D--------------TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN-----------  218 (230)
T ss_pred             C--------------CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC-----------
Confidence            0              012444444322 4569874   443232222    133457999999876310           


Q ss_pred             CcccEEecCCCC
Q 042680          344 SLKPMLYRPNAP  355 (530)
Q Consensus       344 ~~~~eiYDP~t~  355 (530)
                      -.-..+|||.++
T Consensus       219 ~~~~~~y~~~~~  230 (230)
T TIGR01640       219 PFYIFYYNVGEN  230 (230)
T ss_pred             ceEEEEEeccCC
Confidence            013679999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=83.59  E-value=22  Score=38.71  Aligned_cols=133  Identities=17%  Similarity=0.213  Sum_probs=80.9

Q ss_pred             CCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEE-eCceEE
Q 042680          138 DGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVF-ANNRSV  215 (530)
Q Consensus       138 dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~-Gg~~~e  215 (530)
                      ++.+++.||+++ .+..| .+..+  .+...+.           .++|..          .+..+|+|.+++. ||+++-
T Consensus       165 ~~hivvtGsYDg-~vrl~DtR~~~--~~v~eln-----------hg~pVe----------~vl~lpsgs~iasAgGn~vk  220 (487)
T KOG0310|consen  165 NDHIVVTGSYDG-KVRLWDTRSLT--SRVVELN-----------HGCPVE----------SVLALPSGSLIASAGGNSVK  220 (487)
T ss_pred             CCeEEEecCCCc-eEEEEEeccCC--ceeEEec-----------CCCcee----------eEEEcCCCCEEEEcCCCeEE
Confidence            678999999986 46777 55431  2222221           112221          3466788777775 779999


Q ss_pred             EEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEc
Q 042680          216 VHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVV  295 (530)
Q Consensus       216 ~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp  295 (530)
                      +||..++.-  .+..|-    +  +.-+...|.+.        -++.=|+.||-+  .               .+-.||.
T Consensus       221 VWDl~~G~q--ll~~~~----~--H~KtVTcL~l~--------s~~~rLlS~sLD--~---------------~VKVfd~  267 (487)
T KOG0310|consen  221 VWDLTTGGQ--LLTSMF----N--HNKTVTCLRLA--------SDSTRLLSGSLD--R---------------HVKVFDT  267 (487)
T ss_pred             EEEecCCce--ehhhhh----c--ccceEEEEEee--------cCCceEeecccc--c---------------ceEEEEc
Confidence            999997642  233332    1  11234444432        245667888876  2               2456774


Q ss_pred             CCCCCcceec-CCCCccccceeeeecCCeEEEEcCCC
Q 042680          296 TSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGAD  331 (530)
Q Consensus       296 ~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~  331 (530)
                          ..|+.. .|.++----++.+-||++.+++|..+
T Consensus       268 ----t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  268 ----TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             ----cceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence                447776 66655555566667999999999876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=82.51  E-value=36  Score=35.59  Aligned_cols=130  Identities=15%  Similarity=0.203  Sum_probs=68.0

Q ss_pred             cCCcEEEEeC-ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccc
Q 042680          202 PDGNVYVFAN-NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEE  280 (530)
Q Consensus       202 p~G~lfv~Gg-~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~  280 (530)
                      .++.||+... ....+||+++++.....+ ..    .+  ...++             .+++||++...           
T Consensus       240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~----~~--~~p~~-------------~~~~vyv~~~~-----------  288 (377)
T TIGR03300       240 DGGQVYAVSYQGRVAALDLRSGRVLWKRD-AS----SY--QGPAV-------------DDNRLYVTDAD-----------  288 (377)
T ss_pred             ECCEEEEEEcCCEEEEEECCCCcEEEeec-cC----Cc--cCceE-------------eCCEEEEECCC-----------
Confidence            4788888753 467889998875321121 11    11  11111             36888886421           


Q ss_pred             ccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce
Q 042680          281 KRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF  360 (530)
Q Consensus       281 ~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W  360 (530)
                             ..+.++|..+....|+...+.. +.....++ -+++||+.+ .+ |            ...++|+.+.. ..|
T Consensus       289 -------G~l~~~d~~tG~~~W~~~~~~~-~~~ssp~i-~g~~l~~~~-~~-G------------~l~~~d~~tG~-~~~  344 (377)
T TIGR03300       289 -------GVVVALDRRSGSELWKNDELKY-RQLTAPAV-VGGYLVVGD-FE-G------------YLHWLSREDGS-FVA  344 (377)
T ss_pred             -------CeEEEEECCCCcEEEccccccC-CccccCEE-ECCEEEEEe-CC-C------------EEEEEECCCCC-EEE
Confidence                   1356788765556788754432 23333343 477777643 22 1            35678876651 134


Q ss_pred             EEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680          361 AELAPTDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       361 t~la~~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      +. . ..... +.+.-+ +.|+++|+++.+
T Consensus       345 ~~-~-~~~~~-~~~sp~-~~~~~l~v~~~d  370 (377)
T TIGR03300       345 RL-K-TDGSG-IASPPV-VVGDGLLVQTRD  370 (377)
T ss_pred             EE-E-cCCCc-cccCCE-EECCEEEEEeCC
Confidence            32 1 11111 222222 348999988764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=82.14  E-value=68  Score=33.42  Aligned_cols=108  Identities=19%  Similarity=0.176  Sum_probs=52.6

Q ss_pred             eeEEEEeCCCCcEEEccccC-CcccccceeccCCcEEEccCCeEEEeccCCCCcEEEEcCCCCCCCceEEec-ccccccc
Q 042680           99 CHSIFYDYNKNAVKALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFP-FLFETQD  176 (530)
Q Consensus        99 a~~~~yDp~t~~w~~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~yP~~~~~~~~~~~~p-~l~~t~d  176 (530)
                      -.+...|+.+.+.+.+.... .....++..       .-+||+.+++.-+.+.++.+|+...  +....... ....+..
T Consensus        64 v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~-------~~~~g~~l~vany~~g~v~v~~l~~--~g~l~~~~~~~~~~g~  134 (345)
T PF10282_consen   64 VSSYRIDPDTGTLTLLNSVPSGGSSPCHIA-------VDPDGRFLYVANYGGGSVSVFPLDD--DGSLGEVVQTVRHEGS  134 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESSSCEEEEE-------ECTTSSEEEEEETTTTEEEEEEECT--TSEEEEEEEEEESEEE
T ss_pred             EEEEEECCCcceeEEeeeeccCCCCcEEEE-------EecCCCEEEEEEccCCeEEEEEccC--CcccceeeeecccCCC
Confidence            44666777778888886553 222222222       3457877777655566788884432  11111111 1100000


Q ss_pred             ccCCCCCCCccccccCCccceE-EEecCCc-EEEE--eCceEEEEeCCCCe
Q 042680          177 FLERPGNPKGRFRLENNLYPFV-YLLPDGN-VYVF--ANNRSVVHDPKANK  223 (530)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~Yp~~-~llp~G~-lfv~--Gg~~~e~yDp~tn~  223 (530)
                      .   +...|.     ..-.||. ...|||+ ||+.  |.....+|+...++
T Consensus       135 g---~~~~rq-----~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~  177 (345)
T PF10282_consen  135 G---PNPDRQ-----EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT  177 (345)
T ss_dssp             E---SSTTTT-----SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred             C---Cccccc-----ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence            0   000010     1223554 4457887 4544  56788888887665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=81.66  E-value=0.99  Score=38.66  Aligned_cols=24  Identities=46%  Similarity=0.433  Sum_probs=15.9

Q ss_pred             hhhHHHHHHHHHHHHHhcccccCC
Q 042680            6 SKKVQSLILLAAVLLLVNNAAAAP   29 (530)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~   29 (530)
                      ||+++.|.||+++|+|.+++++|.
T Consensus         3 SK~~llL~l~LA~lLlisSevaa~   26 (95)
T PF07172_consen    3 SKAFLLLGLLLAALLLISSEVAAR   26 (95)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhH
Confidence            788877766666666666555554

Some of them may be involved in resistance to environmental stress [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	530
2eie_A	639	Crystal Structure Of Galactose Oxidase Complexed Wi		1e-13
2eic_A	639	Crystal Structure Of Galactose Oxidase Mutant W290f		1e-13
2eib_A	639	Crystal Structure Of Galactose Oxidase, W290h Mutan		1e-13
1k3i_A	656	Crystal Structure Of The Precursor Of Galactose Oxi		1e-13
2eid_A	639	Galactose Oxidase W290g Mutant Length = 639		1e-13
1t2x_A	639	Glactose Oxidase C383s Mutant Identified By Directe		1e-13
2wq8_A	661	Glycan Labelling Using Engineered Variants Of Galac		2e-13

>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With Azide Length = 639

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 31/270 (11%)
Query: 256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
           Y  V  ++L  GGS        ++     NA         TSPN  +    +   RT   
Sbjct: 389 YDAVKGKILTFGGSPDY-----QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 443
Query: 316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
            V+LP+G   I  G   G         P   P +Y    PE   F +  P  I R+YHS+
Sbjct: 444 SVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIY---VPEQDTFYKQNPNSIVRVYHSI 498
Query: 376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYA--ALRPAILEDQSDK 433
           + LLPDG+VF GG     G             + FTP YL       A RP I    +  
Sbjct: 499 SLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS 553
Query: 434 AATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVD 493
               G     R+  S   +I+  + S++     TH ++ +QR + L+   L NN   G +
Sbjct: 554 VKVGG-----RITISTDSSIS--KASLIRYGTATHTVNTDQRRIPLT---LTNN---GGN 600
Query: 494 EVVVAAPPTSALAPPGYYLLSVVNQ-GIPS 522
                 P  S +A PGY++L V+N  G+PS
Sbjct: 601 SYSFQVPSDSGVALPGYWMLFVMNSAGVPS 630

>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f Length = 639

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 31/270 (11%)
Query: 256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
           Y  V  ++L  GGS        ++     NA         TSPN  +    +   RT   
Sbjct: 389 YDAVKGKILTFGGSPDY-----QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 443
Query: 316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
            V+LP+G   I  G   G         P   P +Y    PE   F +  P  I R+YHS+
Sbjct: 444 SVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIY---VPEQDTFYKQNPNSIVRVYHSI 498
Query: 376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYA--ALRPAILEDQSDK 433
           + LLPDG+VF GG     G             + FTP YL       A RP I    +  
Sbjct: 499 SLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS 553
Query: 434 AATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVD 493
               G     R+  S   +I+  + S++     TH ++ +QR + L+   L NN   G +
Sbjct: 554 VKVGG-----RITISTDSSIS--KASLIRYGTATHTVNTDQRRIPLT---LTNN---GGN 600
Query: 494 EVVVAAPPTSALAPPGYYLLSVVNQ-GIPS 522
                 P  S +A PGY++L V+N  G+PS
Sbjct: 601 SYSFQVPSDSGVALPGYWMLFVMNSAGVPS 630

>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant Length = 639

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 31/270 (11%)
Query: 256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
           Y  V  ++L  GGS        ++     NA         TSPN  +    +   RT   
Sbjct: 389 YDAVKGKILTFGGSPDY-----QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 443
Query: 316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
            V+LP+G   I  G   G         P   P +Y    PE   F +  P  I R+YHS+
Sbjct: 444 SVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIY---VPEQDTFYKQNPNSIVRVYHSI 498
Query: 376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYA--ALRPAILEDQSDK 433
           + LLPDG+VF GG     G             + FTP YL       A RP I    +  
Sbjct: 499 SLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS 553
Query: 434 AATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVD 493
               G     R+  S   +I+  + S++     TH ++ +QR + L+   L NN   G +
Sbjct: 554 VKVGG-----RITISTDSSIS--KASLIRYGTATHTVNTDQRRIPLT---LTNN---GGN 600
Query: 494 EVVVAAPPTSALAPPGYYLLSVVNQ-GIPS 522
                 P  S +A PGY++L V+N  G+PS
Sbjct: 601 SYSFQVPSDSGVALPGYWMLFVMNSAGVPS 630

>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase Length = 656

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 31/270 (11%)
Query: 256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
           Y  V  ++L  GGS        ++     NA         TSPN  +    +   RT   
Sbjct: 406 YDAVKGKILTFGGSPDY-----QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 460
Query: 316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
            V+LP+G   I  G   G         P   P +Y    PE   F +  P  I R+YHS+
Sbjct: 461 SVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIY---VPEQDTFYKQNPNSIVRVYHSI 515
Query: 376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYA--ALRPAILEDQSDK 433
           + LLPDG+VF GG     G             + FTP YL       A RP I    +  
Sbjct: 516 SLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS 570
Query: 434 AATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVD 493
               G     R+  S   +I+  + S++     TH ++ +QR + L+   L NN   G +
Sbjct: 571 VKVGG-----RITISTDSSIS--KASLIRYGTATHTVNTDQRRIPLT---LTNN---GGN 617
Query: 494 EVVVAAPPTSALAPPGYYLLSVVNQ-GIPS 522
                 P  S +A PGY++L V+N  G+PS
Sbjct: 618 SYSFQVPSDSGVALPGYWMLFVMNSAGVPS 647

>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant Length = 639

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 31/270 (11%)
Query: 256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
           Y  V  ++L  GGS        ++     NA         TSPN  +    +   RT   
Sbjct: 389 YDAVKGKILTFGGSPDY-----QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 443
Query: 316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
            V+LP+G   I  G   G         P   P +Y    PE   F +  P  I R+YHS+
Sbjct: 444 SVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIY---VPEQDTFYKQNPNSIVRVYHSI 498
Query: 376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYA--ALRPAILEDQSDK 433
           + LLPDG+VF GG     G             + FTP YL       A RP I    +  
Sbjct: 499 SLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS 553
Query: 434 AATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVD 493
               G     R+  S   +I+  + S++     TH ++ +QR + L+   L NN   G +
Sbjct: 554 VKVGG-----RITISTDSSIS--KASLIRYGTATHTVNTDQRRIPLT---LTNN---GGN 600
Query: 494 EVVVAAPPTSALAPPGYYLLSVVNQ-GIPS 522
                 P  S +A PGY++L V+N  G+PS
Sbjct: 601 SYSFQVPSDSGVALPGYWMLFVMNSAGVPS 630

>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed Evolution Length = 639

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 31/270 (11%)
Query: 256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
           Y  V  ++L  GGS        ++     NA         TSPN  +    +   RT   
Sbjct: 389 YDAVKGKILTFGGSPDY-----QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 443
Query: 316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
            V+LP+G   I  G   G         P   P +Y    PE   F +  P  I R+YHS+
Sbjct: 444 SVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIY---VPEQDTFYKQNPNSIVRVYHSI 498
Query: 376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYA--ALRPAILEDQSDK 433
           + LLPDG+VF GG     G             + FTP YL       A RP I    +  
Sbjct: 499 SLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS 553
Query: 434 AATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVD 493
               G     R+  S   +I+  + S++     TH ++ +QR + L+   L NN   G +
Sbjct: 554 VKVGG-----RITISTDSSIS--KASLIRYGTATHTVNTDQRRIPLT---LTNN---GGN 600
Query: 494 EVVVAAPPTSALAPPGYYLLSVVNQ-GIPS 522
                 P  S +A PGY++L V+N  G+PS
Sbjct: 601 SYSFQVPSDSGVALPGYWMLFVMNSAGVPS 630

>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution Length = 661

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 296 TSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP 355
           TSPN  +    +   RT    V+LP+G   I  G   G         P   P +Y    P
Sbjct: 446 TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI--IFEDSTPVFTPEIY---VP 500
Query: 356 EGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYL 415
           E   F +  P  I R YHS++ LLPDG+VF GG     G             + FTP YL
Sbjct: 501 EQDTFYKQNPNSIVRAYHSISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYL 555
Query: 416 APEYA--ALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMN 473
                  A RP I    +      G     R+  S   +I+  + S++     TH ++ +
Sbjct: 556 YDSNGNLATRPKITRTSTQSVKVGG-----RITISTDSSIS--KASLIRYGTATHTVNTD 608
Query: 474 QRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQ-GIPS 522
           QR + L+   L NN   G +      P  S +A PGY++L V+N  G+PS
Sbjct: 609 QRRIPLT---LTNN---GGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPS 652

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	530
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	6e-71
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	5e-04

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score =  238 bits (607), Expect = 6e-71
 Identities = 86/524 (16%), Positives = 164/524 (31%), Gaps = 81/524 (15%)

Query: 49  MHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNK 108
              Q         +    V   + ++    +   +  +       +      +  +D + 
Sbjct: 169 TAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST 228

Query: 109 NAVKA---LKVQSDTWCSSGGLSADGR--------------------------------- 132
             V        + D +C    +  +G+                                 
Sbjct: 229 GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG 288

Query: 133 ---LVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFR 189
                 +SDG     GG  +        E   + ++  +  L   +       + +G +R
Sbjct: 289 YQSSATMSDGRVFTIGGSWSGGVFEKNGE-VYSPSSKTWTSLPNAKVNPMLTADKQGLYR 347

Query: 190 LENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPA---TGTSVL 246
             ++ + +++    G+V+    + ++     +     +        R        G +V+
Sbjct: 348 --SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405

Query: 247 LPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEK 306
                          ++L  GGS              +  L +      TSPN  +    
Sbjct: 406 YDAV---------KGKILTFGGSPDYQDSDATTNA-HIITLGEPG----TSPNTVFASNG 451

Query: 307 MPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPT 366
           +   RT    V+LP+G   I  G   G         P   P +Y P       F +  P 
Sbjct: 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFE--DSTPVFTPEIYVPEQD---TFYKQNPN 506

Query: 367 DIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAI 426
            I R+YHS++ LLPDG+VF GG                   + FTP YL      L    
Sbjct: 507 SIVRVYHSISLLLPDGRVFNGGGGLCGDC-----TTNHFDAQIFTPNYLYNSNGNLAT-- 559

Query: 427 LEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKN 486
              +     T  + V +  + +     +  + S++     TH ++ +QR + L++     
Sbjct: 560 ---RPKITRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQRRIPLTLTNNGG 616

Query: 487 NVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQ-GIPSHSIWFHL 529
           N            P  S +A PGY++L V+N  G+PS +    +
Sbjct: 617 N------SYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 28/148 (18%)

Query: 248 PLYLPRDTYKPVDAEVL-ICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWK-IE 305
              +PR ++ P    ++   GG  R+ L        ++ A +             W  + 
Sbjct: 11  SGLVPRGSHAPKVGRLIYTAGGYFRQSL-------SYLEAYNPSNG--------TWLRLA 55

Query: 306 KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAP 365
            +  PR+   G ++  G +  + G +    G   +        L   N P   +++  AP
Sbjct: 56  DLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSS------ALDCYN-PMTNQWSPCAP 107

Query: 366 TDIPRMYHSVANLLPDGKVF-VGGSNDN 392
             +PR    V  +  DG ++ VGGS+  
Sbjct: 108 MSVPRNRIGVGVI--DGHIYAVGGSHGC 133

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 26/132 (19%)

Query: 263 VLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWK-IEKMPAPRTMADGVLLPN 321
           +L+ GG   +   +       V   D   +        EW  +  +   R     V L +
Sbjct: 17  LLVVGGFGSQQSPI-----DVVEKYDPKTQ--------EWSFLPSITRKRRYVASVSL-H 62

Query: 322 GEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPD 381
             + +I G D G       +            A E   +  +AP ++ R       L   
Sbjct: 63  DRIYVIGGYD-GRSRLSSVEC-------LDYTADEDGVWYSVAPMNVRRGLAGATTL--G 112

Query: 382 GKVF-VGGSNDN 392
             ++  GG + +
Sbjct: 113 DMIYVSGGFDGS 124

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 29/181 (16%), Positives = 51/181 (28%), Gaps = 45/181 (24%)

Query: 38  ELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWH---HNKLTNQTA 94
           EL  +     A+H  ++   +    FD+    +     P   +  + H   H K      
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDS--DDLI---PPYLDQYFYSHIGHHLKNIEHPE 488

Query: 95  EDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEY 154
                  +F D+     K ++  S  W +SG +        L       Y         Y
Sbjct: 489 RMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNT-----LQQ--LKFYK-------PY 533

Query: 155 VPVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLY--PFVYLL------PDGNV 206
           +       +       +    DFL +          E NL    +  LL       D  +
Sbjct: 534 ICDNDPKYER-----LVNAILDFLPKI---------EENLICSKYTDLLRIALMAEDEAI 579

Query: 207 Y 207
           +
Sbjct: 580 F 580

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 35/161 (21%)

Query: 247 LPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKI-- 304
            P+            +V   GGS                 +++  ++ +     + K   
Sbjct: 384 CPINRKFGDVDVAGNDVFYMGGSNP-------------YRVNEILQLSIHYDKIDMKNIE 430

Query: 305 ---EKMPAPR---TMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQ 358
               ++P  R   T     +  N ++L+I G    +     +D        +  +  + +
Sbjct: 431 VSSSEVPVARMCHTFT--TISRNNQLLLIGGRK--APHQGLSD-------NWIFD-MKTR 478

Query: 359 RFAELAPTDIPRMYHSVANLLPDGKVFV-GGSNDNDGYFEF 398
            ++ +      R  HS A  LPDG V + GG  +      +
Sbjct: 479 EWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGPAMLLY 518

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	530
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.97
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.97
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.96
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.96
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.96
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.96
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.96
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.95
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.95
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.95
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.95
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.95
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.94
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.9
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.9
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.88
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.79
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.52
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.3
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.03
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.88
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.58
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.56
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.45
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.32
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	96.26
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.15
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.14
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.06
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	95.96
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.93
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	95.88
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	95.79
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.78
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	95.77
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.75
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	95.69
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	95.55
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.47
3jrp_A	379	Fusion protein of protein transport protein SEC13	95.42
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.38
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.16
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.07
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	95.06
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.01
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.99
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	94.98
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	94.97
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	94.94
3jro_A	753	Fusion protein of protein transport protein SEC13	94.89
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	94.83
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	94.77
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	94.74
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.73
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.64
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.39
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	94.27
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	94.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	93.98
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	93.83
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	93.81
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	93.8
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	93.77
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.69
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	93.51
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.5
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.45
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	93.41
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	93.35
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	93.29
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	93.18
3v9f_A	781	Two-component system sensor histidine kinase/RESP	93.03
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	93.02
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	93.01
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	92.66
3ow8_A	321	WD repeat-containing protein 61; structural genomi	92.57
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	92.5
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	92.44
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	92.3
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	92.17
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	92.03
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	91.83
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	91.78
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	91.76
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	91.76
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	91.76
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	91.52
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	91.49
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	91.26
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	91.02
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	90.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	90.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	90.8
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.65
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	90.56
3jro_A	753	Fusion protein of protein transport protein SEC13	90.51
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	90.26
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	90.11
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	89.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	89.7
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	89.57
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	89.54
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	89.44
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	89.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	89.06
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	89.06
1w8o_A	601	Bacterial sialidase; 3D-structure, glycosidase, hy	89.05
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	89.03
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	89.01
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	88.94
2pm7_B	297	Protein transport protein SEC13, protein transport	88.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	88.69
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	88.62
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	88.6
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	88.53
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	88.48
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	88.37
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	88.18
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	87.88
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	87.8
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	87.76
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	87.47
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	86.63
4a2l_A	795	BT_4663, two-component system sensor histidine kin	86.27
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	86.13
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	86.11
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	86.09
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	85.68
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	85.65
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	85.42
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	85.21
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	85.12
3a72_A	355	EXO-arabinanase; arabinase, glycosyl hydrolase, hy	85.08
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	84.66
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	84.4
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	84.04
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	83.59
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	83.2
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	82.49
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	81.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	81.64
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	81.61
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	81.53
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	81.42
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	81.23
3ott_A	758	Two-component system sensor histidine kinase; beta	80.88
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	80.71
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	80.62
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	80.22

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=1.7e-67  Score=589.58  Aligned_cols=408  Identities=22%  Similarity=0.321  Sum_probs=316.5

Q ss_pred             cCCCCCCCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeC
Q 042680           27 AAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDY  106 (530)
Q Consensus        27 ~~~~~~~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp  106 (530)
                      ....++..++|+.+.+.+. ...|+++++.+||||++|+.....  .    |+ .      +       ......++||+
T Consensus       168 ~~~~dp~~~~W~~~~~~P~-~~~~~av~~~~g~l~v~GG~~~~~--~----~~-~------~-------~~~~~~~~yd~  226 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPI-VPAAAAIEPTSGRVLMWSSYRNDA--F----GG-S------P-------GGITLTSSWDP  226 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSS-CCSEEEEETTTTEEEEEEECCCTT--T----CS-C------C-------CSEEEEEEECT
T ss_pred             cccCCCCCCeeeeeccCCC-CceeEEEEecCCEEEEEecccccc--c----cc-C------C-------CCeEEEEEEeC
Confidence            3445666799999876544 667888873399999999975321  0    10 0      0       02356889999


Q ss_pred             CCCcEEEccccC---CcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCC
Q 042680          107 NKNAVKALKVQS---DTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPG  182 (530)
Q Consensus       107 ~t~~w~~l~~~~---~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~  182 (530)
                      .+++|+++..|+   ..+|+++++        +.||+|||+||.+..++|+| |.++   +|....+|. .         
T Consensus       227 ~t~~w~~~~~~~~~~~~~~~~~~~--------~~~g~lyv~GG~~~~~v~~yd~~t~---~W~~~~~~~-~---------  285 (656)
T 1k3i_A          227 STGIVSDRTVTVTKHDMFCPGISM--------DGNGQIVVTGGNDAKKTSLYDSSSD---SWIPGPDMQ-V---------  285 (656)
T ss_dssp             TTCCBCCCEEEECSCCCSSCEEEE--------CTTSCEEEECSSSTTCEEEEEGGGT---EEEECCCCS-S---------
T ss_pred             CCCcEEeCcccCCCCCCccccccC--------CCCCCEEEeCCCCCCceEEecCcCC---ceeECCCCC-c---------
Confidence            999999998873   557776664        56999999999887789999 9875   455443331 1         


Q ss_pred             CCCccccccCCccceEEEecCCcEEEEeC--------ceEEEEeCCCCeEEEEc-----cCCCCCCCc------------
Q 042680          183 NPKGRFRLENNLYPFVYLLPDGNVYVFAN--------NRSVVHDPKANKIIREF-----PQLPGGARS------------  237 (530)
Q Consensus       183 ~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg--------~~~e~yDp~tn~w~~~~-----p~mp~~~r~------------  237 (530)
                               .++|+.+.+++||+||++||        +++|+|||.+++|. .+     ++|+.. |.            
T Consensus       286 ---------~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~-~~~~~~~~p~~~~-~~~~~~~~~~~iyv  354 (656)
T 1k3i_A          286 ---------ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAKVNPMLTA-DKQGLYRSDNHAWL  354 (656)
T ss_dssp             ---------CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSCSGGGCCC-CTTGGGTTTCSCCE
T ss_pred             ---------cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce-eCCCccccccccc-cccceeecCCceEE
Confidence                     22344556666999999999        46899999999998 55     334321 10            


Q ss_pred             ------------------------------------------cCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          238 ------------------------------------------YPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       238 ------------------------------------------yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                                                                .+..++++|+|.         .+++||+|||.+.... 
T Consensus       355 ~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~---------~~~~i~v~GG~~~~~~-  424 (656)
T 1k3i_A          355 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDA---------VKGKILTFGGSPDYQD-  424 (656)
T ss_dssp             EECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEET---------TTTEEEEECCBSSSSS-
T ss_pred             EECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccC---------CCCeEEEEeCCCCCCC-
Confidence                                                      123456666652         4799999999752110 


Q ss_pred             cccccccccccCC---cEEEEEcCCCCCcceec---CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEE
Q 042680          276 LGEEEKRFVNALD---DCARMVVTSPNPEWKIE---KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPML  349 (530)
Q Consensus       276 ~~~~~~~~~~a~~---s~~~~dp~~~~~~W~~~---~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~ei  349 (530)
                              ..+++   .+++|||.  +++|+..   +|+.+|.+++++++|||+|||+||...+. ++. +.+++.++|+
T Consensus       425 --------~~~~~~~~~v~~yd~~--~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~-~~~-~~~~~~~v~~  492 (656)
T 1k3i_A          425 --------SDATTNAHIITLGEPG--TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI-PFE-DSTPVFTPEI  492 (656)
T ss_dssp             --------SBCCCCEEEEECCSTT--SCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC-TTC-CCSBCCCCEE
T ss_pred             --------CCcCCcceEEEcCCCC--CCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc-CcC-CCCcccceEE
Confidence                    13455   45566665  4889863   89999999999999999999999986442 222 4467789999


Q ss_pred             ecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCCC--cccCCCCcee
Q 042680          350 YRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAP--EYAALRPAIL  427 (530)
Q Consensus       350 YDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~~--~~~~~RP~i~  427 (530)
                      |||+++   +|+.+++++++|+|||++++|+||+|||+||+.+..+     ..+++++|+|+||||++  +..+.||+|+
T Consensus       493 ydp~t~---~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~~-----~~~~~~~e~~~Ppyl~~~~~~~~~rP~i~  564 (656)
T 1k3i_A          493 YVPEQD---TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDC-----TTNHFDAQIFTPNYLYNSNGNLATRPKIT  564 (656)
T ss_dssp             EEGGGT---EEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTC-----SCCCCEEEEEECGGGBCTTSSBCCCCCEE
T ss_pred             EcCCCC---ceeecCCCCCccccccHhhcCCCcEEEecCCCCCCCC-----CCCeeEEEEEeChhhccCCCCcCCCCccc
Confidence            999999   9999999999999999999999999999999887643     24578999999999975  3557899999


Q ss_pred             ccCCCCccccCCEEEEEEEcCCCCccceEEEEEEcCCccccCCCCCcceEEeeeeeeecccCCCceEEEEEcCCCCCcCC
Q 042680          428 EDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAP  507 (530)
Q Consensus       428 ~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~~~v~p  507 (530)
                      +.. |+++.||++|+|+++.      .+.+|+|||++|+||++|||||+|+|+++..      |+.+++|++|||++|||
T Consensus       565 ~~~-~~~~~~g~~~~~~~~~------~~~~~~l~~~~~~th~~~~~qr~~~l~~~~~------~~~~~~~~~p~~~~~~p  631 (656)
T 1k3i_A          565 RTS-TQSVKVGGRITISTDS------SISKASLIRYGTATHTVNTDQRRIPLTLTNN------GGNSYSFQVPSDSGVAL  631 (656)
T ss_dssp             EES-CSEEETTCEEEEEESS------CCSEEEEEECCEEETTBCSSCCEEECCEEEE------ETTEEEEECCSCTTTSC
T ss_pred             ccC-CceecCCCEEEEEEec------cceEEEEEecCccccCcCCCCcEEecceEec------CCCEEEEECCCCCCcCC
Confidence            843 8999999999999874      2568999999999999999999999999863      23578999999999999


Q ss_pred             CcceEEEEEc-CCcCcccEEEEeC
Q 042680          508 PGYYLLSVVN-QGIPSHSIWFHLK  530 (530)
Q Consensus       508 pG~ymlfv~~-~gvPS~~~~v~i~  530 (530)
                      |||||||||+ +||||+|+||+|+
T Consensus       632 pg~y~lf~~~~~g~ps~~~~v~~~  655 (656)
T 1k3i_A          632 PGYWMLFVMNSAGVPSVASTIRVT  655 (656)
T ss_dssp             SEEEEEEEECTTSCBCCCEEEEEE
T ss_pred             CcCeEEEEECCCCcccccEEEEEe
Confidence            9999999995 9999999999984

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.97  E-value=4.5e-29  Score=252.28  Aligned_cols=262  Identities=16%  Similarity=0.169  Sum_probs=192.7

Q ss_pred             CcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccCCccc
Q 042680           43 NAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWC  122 (530)
Q Consensus        43 ~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~~~~~  122 (530)
                      ....+.-|.++. .+++||++||.. +           .               +....++||+.+++|+.++.++..++
T Consensus        11 ~~~~~~~~~~~~-~~~~i~v~GG~~-~-----------~---------------~~~~~~~~d~~~~~W~~~~~~p~~r~   62 (308)
T 1zgk_A           11 SGLVPRGSHAPK-VGRLIYTAGGYF-R-----------Q---------------SLSYLEAYNPSNGTWLRLADLQVPRS   62 (308)
T ss_dssp             ----------CC-CCCCEEEECCBS-S-----------S---------------BCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             CCeeeCCccccC-CCCEEEEEeCcC-C-----------C---------------CcceEEEEcCCCCeEeECCCCCcccc
Confidence            344566777777 799999999972 1           1               13558899999999999998876555


Q ss_pred             ccceeccCCcEEEccCCeEEEeccC----CC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCC
Q 042680          123 SSGGLSADGRLVMLSDGSFLVYGGR----DA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENN  193 (530)
Q Consensus       123 ~~~~~l~dG~l~~L~dG~v~VvGG~----~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~  193 (530)
                      ..+++        +.+++|||+||.    +.    .++++| |.++   +|....++. .          +  |      
T Consensus        63 ~~~~~--------~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~---~W~~~~~~p-~----------~--r------  112 (308)
T 1zgk_A           63 GLAGC--------VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN---QWSPCAPMS-V----------P--R------  112 (308)
T ss_dssp             SCEEE--------EETTEEEEECCEEEETTEEEECCCEEEEETTTT---EEEECCCCS-S----------C--C------
T ss_pred             cceEE--------EECCEEEEECCCcCCCCCCeecceEEEECCCCC---eEeECCCCC-c----------C--c------
Confidence            43332        339999999998    32    468899 8875   455443331 1          1  1      


Q ss_pred             ccceEEEecCCcEEEEeC-------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEe
Q 042680          194 LYPFVYLLPDGNVYVFAN-------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLIC  266 (530)
Q Consensus       194 ~Yp~~~llp~G~lfv~Gg-------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~  266 (530)
                       +-+..++.+|+||++||       +++++||+.+++|. .+++||. +|..   .+++.            ++++||++
T Consensus       113 -~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~-~r~~---~~~~~------------~~~~iyv~  174 (308)
T 1zgk_A          113 -NRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH-LVAPMLT-RRIG---VGVAV------------LNRLLYAV  174 (308)
T ss_dssp             -BTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEE-ECCCCSS-CCBS---CEEEE------------ETTEEEEE
T ss_pred             -cccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEe-ECCCCCc-cccc---eEEEE------------ECCEEEEE
Confidence             23556677999999999       46899999999999 7888884 4443   23332            37899999


Q ss_pred             cCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCc
Q 042680          267 GGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSL  345 (530)
Q Consensus       267 GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~  345 (530)
                      ||.+..            ..++++++||+.  +++|+.. +|+.+|..+.++++ +++|||+||...        .....
T Consensus       175 GG~~~~------------~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~--------~~~~~  231 (308)
T 1zgk_A          175 GGFDGT------------NRLNSAECYYPE--RNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDG--------QDQLN  231 (308)
T ss_dssp             CCBCSS------------CBCCCEEEEETT--TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCS--------SSBCC
T ss_pred             eCCCCC------------CcCceEEEEeCC--CCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCC--------CCccc
Confidence            997522            126789999998  4999997 99999999998887 999999999752        12255


Q ss_pred             ccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCC
Q 042680          346 KPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLA  416 (530)
Q Consensus       346 ~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~  416 (530)
                      .+++|||+++   +|+.+++++.+|..|+++++  +++|||.||....      .+  ..++|+|+|....
T Consensus       232 ~v~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~------~~--~~~v~~yd~~~~~  289 (308)
T 1zgk_A          232 SVERYDVETE---TWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGH------TF--LDSVECYDPDTDT  289 (308)
T ss_dssp             CEEEEETTTT---EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSS------CB--CCEEEEEETTTTE
T ss_pred             eEEEEeCCCC---cEEECCCCCCCccceEEEEE--CCEEEEEcCcCCC------cc--cceEEEEcCCCCE
Confidence            7999999999   99999999999999998887  9999999996432      12  3579999998753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.97  E-value=6.9e-29  Score=249.36  Aligned_cols=252  Identities=17%  Similarity=0.211  Sum_probs=190.8

Q ss_pred             CCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccCCcccccceeccCCcEEE
Q 042680           56 KTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVM  135 (530)
Q Consensus        56 ~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~  135 (530)
                      -+++||++||.+..                           .....++||+.+++|+.++.++..++..+++        
T Consensus        14 ~~~~i~v~GG~~~~---------------------------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--------   58 (302)
T 2xn4_A           14 LPKLMVVVGGQAPK---------------------------AIRSVECYDFKEERWHQVAELPSRRCRAGMV--------   58 (302)
T ss_dssp             -CEEEEEECCBSSS---------------------------BCCCEEEEETTTTEEEEECCCSSCCBSCEEE--------
T ss_pred             CCCEEEEECCCCCC---------------------------CCCcEEEEcCcCCcEeEcccCCcccccceEE--------
Confidence            37899999996421                           1245789999999999999887665544432        


Q ss_pred             ccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEe
Q 042680          136 LSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFA  210 (530)
Q Consensus       136 L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~G  210 (530)
                      ..+++|||+||.+.    .++++| |.++   +|....++. .          +  |       +.|..++.+|+||++|
T Consensus        59 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p-~----------~--r-------~~~~~~~~~~~iyv~G  115 (302)
T 2xn4_A           59 YMAGLVFAVGGFNGSLRVRTVDSYDPVKD---QWTSVANMR-D----------R--R-------STLGAAVLNGLLYAVG  115 (302)
T ss_dssp             EETTEEEEESCBCSSSBCCCEEEEETTTT---EEEEECCCS-S----------C--C-------BSCEEEEETTEEEEEE
T ss_pred             EECCEEEEEeCcCCCccccceEEECCCCC---ceeeCCCCC-c----------c--c-------cceEEEEECCEEEEEc
Confidence            33999999999764    468999 8875   455444331 1          1  1       2366677899999999


Q ss_pred             C-------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccc
Q 042680          211 N-------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRF  283 (530)
Q Consensus       211 g-------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~  283 (530)
                      |       +++++||+.+++|. .+++||. +|..   .+++.            ++++||++||.+....         
T Consensus       116 G~~~~~~~~~~~~~d~~~~~W~-~~~~~p~-~r~~---~~~~~------------~~~~iyv~GG~~~~~~---------  169 (302)
T 2xn4_A          116 GFDGSTGLSSVEAYNIKSNEWF-HVAPMNT-RRSS---VGVGV------------VGGLLYAVGGYDVASR---------  169 (302)
T ss_dssp             EECSSCEEEEEEEEETTTTEEE-EECCCSS-CCBS---CEEEE------------ETTEEEEECCEETTTT---------
T ss_pred             CCCCCccCceEEEEeCCCCeEe-ecCCCCC-cccC---ceEEE------------ECCEEEEEeCCCCCCC---------
Confidence            8       36899999999999 7888884 4443   22332            4789999999762210         


Q ss_pred             cccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEE
Q 042680          284 VNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAE  362 (530)
Q Consensus       284 ~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~  362 (530)
                       ..++++++||+.  +++|+.. +|+.+|..+.++++ +++|||+||...        ......+++|||+++   +|+.
T Consensus       170 -~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~--------~~~~~~~~~yd~~~~---~W~~  234 (302)
T 2xn4_A          170 -QCLSTVECYNAT--TNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDG--------PLVRKSVEVYDPTTN---AWRQ  234 (302)
T ss_dssp             -EECCCEEEEETT--TTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSS--------SSBCCCEEEEETTTT---EEEE
T ss_pred             -ccccEEEEEeCC--CCcEEECCCCccccccccEEEE-CCEEEEECCCCC--------CcccceEEEEeCCCC---CEee
Confidence             236789999998  4999997 99999999998876 999999999752        122457999999999   9999


Q ss_pred             ecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCC
Q 042680          363 LAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLA  416 (530)
Q Consensus       363 la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~  416 (530)
                      +++++.+|..|+++++  +++|||.||....      ..  ..++|+|+|..-.
T Consensus       235 ~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~------~~--~~~v~~yd~~~~~  278 (302)
T 2xn4_A          235 VADMNMCRRNAGVCAV--NGLLYVVGGDDGS------CN--LASVEYYNPTTDK  278 (302)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCBCSS------SB--CCCEEEEETTTTE
T ss_pred             CCCCCCccccCeEEEE--CCEEEEECCcCCC------cc--cccEEEEcCCCCe
Confidence            9999999999998777  9999999996432      11  3469999998754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.96  E-value=3.5e-28  Score=244.66  Aligned_cols=238  Identities=12%  Similarity=0.141  Sum_probs=181.8

Q ss_pred             eeEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC---CcEEEE-cCCCCCCCceEEecccccc
Q 042680           99 CHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA---FSYEYV-PVEKESNKAAIAFPFLFET  174 (530)
Q Consensus        99 a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~---~s~E~y-P~~~~~~~~~~~~p~l~~t  174 (530)
                      ...+.||+.+++|+.++.++..++..+++        +.+|+|||+||.+.   .+++.| |.++   +|....++. . 
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--------~~~~~lyv~GG~~~~~~~~~~~~d~~~~---~W~~~~~~p-~-   90 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACV--------FWDNVVYILGGSQLFPIKRMDCYNVVKD---SWYSKLGPP-T-   90 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEE--------EETTEEEEECCBSSSBCCEEEEEETTTT---EEEEEECCS-S-
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEE--------EECCEEEEEeCCCCCCcceEEEEeCCCC---eEEECCCCC-c-
Confidence            34779999999999999988666554443        34999999999762   468899 8875   465444331 1 


Q ss_pred             ccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc--------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEee
Q 042680          175 QDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVL  246 (530)
Q Consensus       175 ~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svm  246 (530)
                               +  |       +-|..++.+|+||++||.        ++++||+.+++|. .+++||. +|..   .+++.
T Consensus        91 ---------~--r-------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~-~r~~---~~~~~  147 (306)
T 3ii7_A           91 ---------P--R-------DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWH-TKPSMLT-QRCS---HGMVE  147 (306)
T ss_dssp             ---------C--C-------BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEE-EECCCSS-CCBS---CEEEE
T ss_pred             ---------c--c-------cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceE-eCCCCcC-Ccce---eEEEE
Confidence                     1  1       235667779999999994        4899999999999 7888884 4443   23332


Q ss_pred             ccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEE
Q 042680          247 LPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVL  325 (530)
Q Consensus       247 lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~Vl  325 (530)
                                  ++++||++||.......        ...++++++||+.  +++|+.. +|+.+|..+.++++ +++||
T Consensus       148 ------------~~~~iyv~GG~~~~~~~--------~~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~-~~~i~  204 (306)
T 3ii7_A          148 ------------ANGLIYVCGGSLGNNVS--------GRVLNSCEVYDPA--TETWTELCPMIEARKNHGLVFV-KDKIF  204 (306)
T ss_dssp             ------------ETTEEEEECCEESCTTT--------CEECCCEEEEETT--TTEEEEECCCSSCCBSCEEEEE-TTEEE
T ss_pred             ------------ECCEEEEECCCCCCCCc--------ccccceEEEeCCC--CCeEEECCCccchhhcceEEEE-CCEEE
Confidence                        37899999997632110        0126789999998  4899998 99999999998887 99999


Q ss_pred             EEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcc
Q 042680          326 IINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTEL  405 (530)
Q Consensus       326 ViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~  405 (530)
                      |+||...        ......+++|||+++   +|+.+++++.+|..|+++++  +++|||.||....      .+  ..
T Consensus       205 v~GG~~~--------~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~------~~--~~  263 (306)
T 3ii7_A          205 AVGGQNG--------LGGLDNVEYYDIKLN---EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGV------GR--LG  263 (306)
T ss_dssp             EECCEET--------TEEBCCEEEEETTTT---EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSS------SB--CC
T ss_pred             EEeCCCC--------CCCCceEEEeeCCCC---cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCC------ee--ee
Confidence            9999752        123457899999999   99999999999999998887  9999999996432      12  34


Q ss_pred             eEEEEcCCCCC
Q 042680          406 RLEKFTPPYLA  416 (530)
Q Consensus       406 ~vE~y~Ppyl~  416 (530)
                      ++|+|+|..-.
T Consensus       264 ~~~~yd~~~~~  274 (306)
T 3ii7_A          264 HILEYNTETDK  274 (306)
T ss_dssp             EEEEEETTTTE
T ss_pred             eEEEEcCCCCe
Confidence            79999998854

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.96  E-value=2.6e-28  Score=245.17  Aligned_cols=252  Identities=14%  Similarity=0.108  Sum_probs=190.7

Q ss_pred             CCCCCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCC
Q 042680           30 AGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKN  109 (530)
Q Consensus        30 ~~~~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~  109 (530)
                      .+...++|+.+.....-+..|.++. .+++||++||....           .               +....++||+.++
T Consensus        35 ~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~-----------~---------------~~~~~~~~d~~~~   87 (302)
T 2xn4_A           35 YDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGS-----------L---------------RVRTVDSYDPVKD   87 (302)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSS-----------S---------------BCCCEEEEETTTT
T ss_pred             EcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCC-----------c---------------cccceEEECCCCC
Confidence            3445689999877766777788777 79999999996421           0               1355789999999


Q ss_pred             cEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCC
Q 042680          110 AVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNP  184 (530)
Q Consensus       110 ~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~  184 (530)
                      +|+.++.|+..++..+++        +.+|+|||+||.+.    .++|.| |.++   +|....++..           +
T Consensus        88 ~W~~~~~~p~~r~~~~~~--------~~~~~iyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~-----------~  145 (302)
T 2xn4_A           88 QWTSVANMRDRRSTLGAA--------VLNGLLYAVGGFDGSTGLSSVEAYNIKSN---EWFHVAPMNT-----------R  145 (302)
T ss_dssp             EEEEECCCSSCCBSCEEE--------EETTEEEEEEEECSSCEEEEEEEEETTTT---EEEEECCCSS-----------C
T ss_pred             ceeeCCCCCccccceEEE--------EECCEEEEEcCCCCCccCceEEEEeCCCC---eEeecCCCCC-----------c
Confidence            999999987655544432        33999999999764    368999 8875   4655444311           1


Q ss_pred             CccccccCCccceEEEecCCcEEEEeCc---------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCC
Q 042680          185 KGRFRLENNLYPFVYLLPDGNVYVFANN---------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDT  255 (530)
Q Consensus       185 ~~~~~~~~~~Yp~~~llp~G~lfv~Gg~---------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~  255 (530)
                        |       +-+..+..+|+||++||.         ++++||+.+++|. .+++||. +|..   .+++.         
T Consensus       146 --r-------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~-~r~~---~~~~~---------  202 (302)
T 2xn4_A          146 --R-------SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWT-YIAEMST-RRSG---AGVGV---------  202 (302)
T ss_dssp             --C-------BSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEE-EECCCSS-CCBS---CEEEE---------
T ss_pred             --c-------cCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE-ECCCCcc-cccc---ccEEE---------
Confidence              1       235667789999999983         4899999999999 7888873 4443   22332         


Q ss_pred             CCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCC
Q 042680          256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGS  334 (530)
Q Consensus       256 ~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~  334 (530)
                         ++++||++||.+..            ..++++++||+.  +++|+.. +|+.+|..+.++++ +|+|||+||...  
T Consensus       203 ---~~~~iyv~GG~~~~------------~~~~~~~~yd~~--~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~--  262 (302)
T 2xn4_A          203 ---LNNLLYAVGGHDGP------------LVRKSVEVYDPT--TNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGDDG--  262 (302)
T ss_dssp             ---ETTEEEEECCBSSS------------SBCCCEEEEETT--TTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCS--
T ss_pred             ---ECCEEEEECCCCCC------------cccceEEEEeCC--CCCEeeCCCCCCccccCeEEEE-CCEEEEECCcCC--
Confidence               47999999997522            235689999998  4899987 89999999988876 999999999752  


Q ss_pred             CCcccCCCCCcccEEecCCCCCCCceEEec-CCCCCCcccccceecCCCeE
Q 042680          335 GGWHCADKPSLKPMLYRPNAPEGQRFAELA-PTDIPRMYHSVANLLPDGKV  384 (530)
Q Consensus       335 ~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la-~~~~~R~yHS~a~LLpdGrV  384 (530)
                            ......+++|||+++   +|+.++ +|+.+|.+|+++++  +++|
T Consensus       263 ------~~~~~~v~~yd~~~~---~W~~~~~~~~~~r~~~~~~~~--~~~i  302 (302)
T 2xn4_A          263 ------SCNLASVEYYNPTTD---KWTVVSSCMSTGRSYAGVTVI--DKRL  302 (302)
T ss_dssp             ------SSBCCCEEEEETTTT---EEEECSSCCSSCCBSCEEEEE--EC--
T ss_pred             ------CcccccEEEEcCCCC---eEEECCcccCcccccceEEEe--cccC
Confidence                  123457999999999   999997 89999999998887  6664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.96  E-value=5.9e-28  Score=242.14  Aligned_cols=255  Identities=16%  Similarity=0.136  Sum_probs=190.4

Q ss_pred             CCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccCCcccccceeccCCcEEE
Q 042680           56 KTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVM  135 (530)
Q Consensus        56 ~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~  135 (530)
                      .+++||++||...+        +  .               .....++||+.+++|+.++.++..++..+++        
T Consensus        13 ~~~~i~~~GG~~~~--------~--~---------------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--------   59 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQ--------Q--S---------------PIDVVEKYDPKTQEWSFLPSITRKRRYVASV--------   59 (301)
T ss_dssp             CCEEEEEECCEETT--------T--E---------------ECCCEEEEETTTTEEEECCCCSSCCBSCEEE--------
T ss_pred             CCCEEEEEeCccCC--------C--c---------------ceeEEEEEcCCCCeEEeCCCCChhhccccEE--------
Confidence            37899999994321        0  0               2356889999999999999887655544432        


Q ss_pred             ccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEe
Q 042680          136 LSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFA  210 (530)
Q Consensus       136 L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~G  210 (530)
                      +.+++|||+||.+.    .++++| |.+++...|....++. .          +         .+-|..+..+|+||++|
T Consensus        60 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p-~----------~---------r~~~~~~~~~~~lyv~G  119 (301)
T 2vpj_A           60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN-V----------R---------RGLAGATTLGDMIYVSG  119 (301)
T ss_dssp             EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS-S----------C---------CBSCEEEEETTEEEEEC
T ss_pred             EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC-C----------C---------ccceeEEEECCEEEEEc
Confidence            34999999999763    468899 8775100155443331 1          1         12356677799999999


Q ss_pred             C-------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccc
Q 042680          211 N-------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRF  283 (530)
Q Consensus       211 g-------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~  283 (530)
                      |       +++++||+.+++|. .+++||. +|..   .+++.            ++++||++||.+..           
T Consensus       120 G~~~~~~~~~~~~~d~~~~~W~-~~~~~p~-~r~~---~~~~~------------~~~~iyv~GG~~~~-----------  171 (301)
T 2vpj_A          120 GFDGSRRHTSMERYDPNIDQWS-MLGDMQT-AREG---AGLVV------------ASGVIYCLGGYDGL-----------  171 (301)
T ss_dssp             CBCSSCBCCEEEEEETTTTEEE-EEEECSS-CCBS---CEEEE------------ETTEEEEECCBCSS-----------
T ss_pred             ccCCCcccceEEEEcCCCCeEE-ECCCCCC-Cccc---ceEEE------------ECCEEEEECCCCCC-----------
Confidence            8       36899999999999 7888873 4443   23332            37999999997522           


Q ss_pred             cccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEE
Q 042680          284 VNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAE  362 (530)
Q Consensus       284 ~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~  362 (530)
                       ..++++++||+.  +++|+.. +|+.+|..+.++++ +++|||+||... .       .....+++|||+++   +|+.
T Consensus       172 -~~~~~~~~~d~~--~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~-~-------~~~~~v~~yd~~~~---~W~~  236 (301)
T 2vpj_A          172 -NILNSVEKYDPH--TGHWTNVTPMATKRSGAGVALL-NDHIYVVGGFDG-T-------AHLSSVEAYNIRTD---SWTT  236 (301)
T ss_dssp             -CBCCCEEEEETT--TTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCS-S-------SBCCCEEEEETTTT---EEEE
T ss_pred             -cccceEEEEeCC--CCcEEeCCCCCcccccceEEEE-CCEEEEEeCCCC-C-------cccceEEEEeCCCC---cEEE
Confidence             246789999998  4899997 89999999998876 999999999752 1       12457899999999   9999


Q ss_pred             ecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCC
Q 042680          363 LAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLA  416 (530)
Q Consensus       363 la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~  416 (530)
                      +++++.+|.+|+++++  +++||+.||....      ..  ..++|+|+|..-.
T Consensus       237 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~------~~--~~~v~~yd~~~~~  280 (301)
T 2vpj_A          237 VTSMTTPRCYVGATVL--RGRLYAIAGYDGN------SL--LSSIECYDPIIDS  280 (301)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCBCSS------SB--EEEEEEEETTTTE
T ss_pred             CCCCCCcccceeEEEE--CCEEEEEcCcCCC------cc--cccEEEEcCCCCe
Confidence            9999999999998777  9999999995432      11  3579999998643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.96  E-value=1e-27  Score=241.21  Aligned_cols=249  Identities=14%  Similarity=0.121  Sum_probs=192.1

Q ss_pred             CCCCCCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCC
Q 042680           29 PAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNK  108 (530)
Q Consensus        29 ~~~~~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t  108 (530)
                      ..+...++|+.+.....-+..|+++. .++++|++||.. .           .               +....++||+.+
T Consensus        28 ~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~-~-----------~---------------~~~~~~~~d~~~   79 (306)
T 3ii7_A           28 YFNPKDYSWTDIRCPFEKRRDAACVF-WDNVVYILGGSQ-L-----------F---------------PIKRMDCYNVVK   79 (306)
T ss_dssp             EEETTTTEEEECCCCSCCCBSCEEEE-ETTEEEEECCBS-S-----------S---------------BCCEEEEEETTT
T ss_pred             EecCCCCCEecCCCCCcccceeEEEE-ECCEEEEEeCCC-C-----------C---------------CcceEEEEeCCC
Confidence            34556789999987777788888887 799999999965 1           0               236688999999


Q ss_pred             CcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCC-C----CcEEEE-cCCCCCCCceEEeccccccccccCCCC
Q 042680          109 NAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRD-A----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPG  182 (530)
Q Consensus       109 ~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~-~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~  182 (530)
                      ++|+.++.++..++..+++        +.+|+|||+||.+ .    .++|+| |.++   +|....++. .         
T Consensus        80 ~~W~~~~~~p~~r~~~~~~--------~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~---~W~~~~~~p-~---------  138 (306)
T 3ii7_A           80 DSWYSKLGPPTPRDSLAAC--------AAEGKIYTSGGSEVGNSALYLFECYDTRTE---SWHTKPSML-T---------  138 (306)
T ss_dssp             TEEEEEECCSSCCBSCEEE--------EETTEEEEECCBBTTBSCCCCEEEEETTTT---EEEEECCCS-S---------
T ss_pred             CeEEECCCCCccccceeEE--------EECCEEEEECCCCCCCcEeeeEEEEeCCCC---ceEeCCCCc-C---------
Confidence            9999999887555544432        3399999999986 2    468999 8875   465443331 1         


Q ss_pred             CCCccccccCCccceEEEecCCcEEEEeCc-----------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCC
Q 042680          183 NPKGRFRLENNLYPFVYLLPDGNVYVFANN-----------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYL  251 (530)
Q Consensus       183 ~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-----------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~  251 (530)
                       +         .+-|..+..+|+||++||.           ++++||+.+++|. .+++||. +|..   .+++.     
T Consensus       139 -~---------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~-~r~~---~~~~~-----  198 (306)
T 3ii7_A          139 -Q---------RCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT-ELCPMIE-ARKN---HGLVF-----  198 (306)
T ss_dssp             -C---------CBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE-EECCCSS-CCBS---CEEEE-----
T ss_pred             -C---------cceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE-ECCCccc-hhhc---ceEEE-----
Confidence             1         1235667779999999982           4799999999999 7888874 4442   23332     


Q ss_pred             CCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCC
Q 042680          252 PRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGA  330 (530)
Q Consensus       252 ~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~  330 (530)
                             ++++||++||.+..            ..++++++||+.  +++|+.. +|+.+|..+.++++ +++|||+||.
T Consensus       199 -------~~~~i~v~GG~~~~------------~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~  256 (306)
T 3ii7_A          199 -------VKDKIFAVGGQNGL------------GGLDNVEYYDIK--LNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGF  256 (306)
T ss_dssp             -------ETTEEEEECCEETT------------EEBCCEEEEETT--TTEEEECCCCSCCBSCCEEEEE-TTEEEEEECB
T ss_pred             -------ECCEEEEEeCCCCC------------CCCceEEEeeCC--CCcEEECCCCCCCccceeEEEE-CCEEEEEeCc
Confidence                   47899999997622            135689999998  4899998 99999999998887 9999999997


Q ss_pred             CCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceec
Q 042680          331 DLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLL  379 (530)
Q Consensus       331 ~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LL  379 (530)
                      +. .       .....+++|||+++   +|+.+++++.+|.+|+++++.
T Consensus       257 ~~-~-------~~~~~~~~yd~~~~---~W~~~~~~~~~r~~~~~~~~~  294 (306)
T 3ii7_A          257 QG-V-------GRLGHILEYNTETD---KWVANSKVRAFPVTSCLICVV  294 (306)
T ss_dssp             CS-S-------SBCCEEEEEETTTT---EEEEEEEEECCSCTTCEEEEE
T ss_pred             CC-C-------eeeeeEEEEcCCCC---eEEeCCCcccccceeEEEEEC
Confidence            52 1       13457899999999   999999999999999988874

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.96  E-value=1.1e-27  Score=241.97  Aligned_cols=252  Identities=15%  Similarity=0.101  Sum_probs=190.1

Q ss_pred             CCCCCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCC
Q 042680           30 AGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKN  109 (530)
Q Consensus        30 ~~~~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~  109 (530)
                      .+...++|+.+.....-+.-|.++. .+++||++||....+.      +  .              .+.+..++||+.++
T Consensus        44 ~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~------~--~--------------~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           44 YNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPD------G--N--------------TDSSALDCYNPMTN  100 (308)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETT------E--E--------------EECCCEEEEETTTT
T ss_pred             EcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCC------C--C--------------eecceEEEECCCCC
Confidence            3445689999977666677788777 7999999999742100      0  0              02356889999999


Q ss_pred             cEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCC
Q 042680          110 AVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNP  184 (530)
Q Consensus       110 ~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~  184 (530)
                      +|+.++.|+..++..+++        +.+|+|||+||.+.    .++|.| |.++   +|....++..            
T Consensus       101 ~W~~~~~~p~~r~~~~~~--------~~~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~------------  157 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVG--------VIDGHIYAVGGSHGCIHHNSVERYEPERD---EWHLVAPMLT------------  157 (308)
T ss_dssp             EEEECCCCSSCCBTCEEE--------EETTEEEEECCEETTEECCCEEEEETTTT---EEEECCCCSS------------
T ss_pred             eEeECCCCCcCccccEEE--------EECCEEEEEcCCCCCcccccEEEECCCCC---eEeECCCCCc------------
Confidence            999999887655544432        33999999999764    468999 8875   4554433311            


Q ss_pred             CccccccCCccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCC
Q 042680          185 KGRFRLENNLYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYK  257 (530)
Q Consensus       185 ~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~  257 (530)
                              ..+-+..++.+++||++||.       ++++||+.+++|. .+++||. +|..   .+++.           
T Consensus       158 --------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~-~r~~---~~~~~-----------  213 (308)
T 1zgk_A          158 --------RRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR-MITAMNT-IRSG---AGVCV-----------  213 (308)
T ss_dssp             --------CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE-ECCCCSS-CCBS---CEEEE-----------
T ss_pred             --------cccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEe-eCCCCCC-cccc---ceEEE-----------
Confidence                    11235566679999999983       5899999999999 7888874 4443   22332           


Q ss_pred             CCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCC
Q 042680          258 PVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGG  336 (530)
Q Consensus       258 ~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g  336 (530)
                       ++++||++||.+..            ..++++++||+.  +++|+.. +|+.+|..+.++++ +++|||+||...    
T Consensus       214 -~~~~iyv~GG~~~~------------~~~~~v~~yd~~--~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~----  273 (308)
T 1zgk_A          214 -LHNCIYAAGGYDGQ------------DQLNSVERYDVE--TETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDG----  273 (308)
T ss_dssp             -ETTEEEEECCBCSS------------SBCCCEEEEETT--TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCS----
T ss_pred             -ECCEEEEEeCCCCC------------CccceEEEEeCC--CCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCC----
Confidence             37999999997622            136789999998  4899997 99999999998886 999999999752    


Q ss_pred             cccCCCCCcccEEecCCCCCCCceEEecCCCCCCccccccee
Q 042680          337 WHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANL  378 (530)
Q Consensus       337 ~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~L  378 (530)
                          ......+++|||+++   +|+.+++|+.+|.+|++++|
T Consensus       274 ----~~~~~~v~~yd~~~~---~W~~~~~~p~~r~~~~~~~l  308 (308)
T 1zgk_A          274 ----HTFLDSVECYDPDTD---TWSEVTRMTSGRSGVGVAVT  308 (308)
T ss_dssp             ----SCBCCEEEEEETTTT---EEEEEEECSSCCBSCEEEEC
T ss_pred             ----CcccceEEEEcCCCC---EEeecCCCCCCcccceeEeC
Confidence                123457899999999   99999999999999997764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.95  E-value=3.6e-27  Score=242.32  Aligned_cols=256  Identities=15%  Similarity=0.146  Sum_probs=176.1

Q ss_pred             CcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCC--CCcEEEccccC-C
Q 042680           43 NAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYN--KNAVKALKVQS-D  119 (530)
Q Consensus        43 ~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~--t~~w~~l~~~~-~  119 (530)
                      ++.-+..|++++ .+++||++||...                              ...++||+.  +++|+.++.|+ .
T Consensus         6 lP~~r~~~~~~~-~~~~iyv~GG~~~------------------------------~~~~~~d~~~~~~~W~~~~~~p~~   54 (357)
T 2uvk_A            6 TPVPFKSGTGAI-DNDTVYIGLGSAG------------------------------TAWYKLDTQAKDKKWTALAAFPGG   54 (357)
T ss_dssp             CSSCCCSCEEEE-ETTEEEEECGGGT------------------------------TCEEEEETTSSSCCEEECCCCTTC
T ss_pred             CCccccceEEEE-ECCEEEEEeCcCC------------------------------CeEEEEccccCCCCeeECCCCCCC
Confidence            334445577766 6999999998531                              126799997  49999999987 5


Q ss_pred             cccccceeccCCcEEEccCCeEEEeccC-C--------CCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCcccc
Q 042680          120 TWCSSGGLSADGRLVMLSDGSFLVYGGR-D--------AFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFR  189 (530)
Q Consensus       120 ~~~~~~~~l~dG~l~~L~dG~v~VvGG~-~--------~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~  189 (530)
                      .++..+++        +.+|+|||+||. +        ..++|+| |.++   +|....++.            +..|  
T Consensus        55 ~R~~~~~~--------~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~~------------p~~r--  109 (357)
T 2uvk_A           55 PRDQATSA--------FIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN---SWVKLMSHA------------PMGM--  109 (357)
T ss_dssp             CCBSCEEE--------EETTEEEEECCEEECTTSCEEECCCEEEEETTTT---EEEECSCCC------------SSCC--
T ss_pred             cCccceEE--------EECCEEEEEcCCCCCCCccceeeccEEEEeCCCC---cEEECCCCC------------Cccc--
Confidence            55544432        339999999998 3        1468999 8875   465544432            1122  


Q ss_pred             ccCCccceEEEecCCcEEEEeC-----------------------------------------ceEEEEeCCCCeEEEEc
Q 042680          190 LENNLYPFVYLLPDGNVYVFAN-----------------------------------------NRSVVHDPKANKIIREF  228 (530)
Q Consensus       190 ~~~~~Yp~~~llp~G~lfv~Gg-----------------------------------------~~~e~yDp~tn~w~~~~  228 (530)
                           +-|..+..+|+||++||                                         +++++||+.+++|. .+
T Consensus       110 -----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~-~~  183 (357)
T 2uvk_A          110 -----AGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWS-YA  183 (357)
T ss_dssp             -----SSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEE-EE
T ss_pred             -----ccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEE-EC
Confidence                 23555668999999999                                         46899999999999 67


Q ss_pred             cCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CC
Q 042680          229 PQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KM  307 (530)
Q Consensus       229 p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M  307 (530)
                      ++||...|..   .+++.            .+++||++||.....           ..+..+++||+...+++|+.. +|
T Consensus       184 ~~~p~~~~~~---~~~~~------------~~~~iyv~GG~~~~~-----------~~~~~v~~~d~d~~~~~W~~~~~~  237 (357)
T 2uvk_A          184 GESPWYGTAG---AAVVN------------KGDKTWLINGEAKPG-----------LRTDAVFELDFTGNNLKWNKLAPV  237 (357)
T ss_dssp             EECSSCCCBS---CEEEE------------ETTEEEEECCEEETT-----------EECCCEEEEECC---CEEEECCCS
T ss_pred             CCCCCCCccc---ccEEE------------ECCEEEEEeeecCCC-----------cccCceEEEEecCCCCcEEecCCC
Confidence            8887422221   22222            479999999975221           135678889873336899997 88


Q ss_pred             CCccc--cceeeeecCCeEEEEcCCCCCCC------C--c-ccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccc
Q 042680          308 PAPRT--MADGVLLPNGEVLIINGADLGSG------G--W-HCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVA  376 (530)
Q Consensus       308 ~~~R~--~~~~vvLpdG~VlViGG~~~g~~------g--~-~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a  376 (530)
                      +.+|.  .+.++++ +++|||+||......      +  | ......+..+++|||+++   +|+.+++++.+|.+|+++
T Consensus       238 ~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~  313 (357)
T 2uvk_A          238 SSPDGVAGGFAGIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG---KWDKSGELSQGRAYGVSL  313 (357)
T ss_dssp             STTTCCBSCEEEEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC------CEEEEECSSCCBSSEEE
T ss_pred             CCCcccccceEEEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC---ceeeCCCCCCCcccceeE
Confidence            77654  4556664 999999999642100      0  0 001123457899999999   999999999999999987


Q ss_pred             eecCCCeEEEcCCCCC
Q 042680          377 NLLPDGKVFVGGSNDN  392 (530)
Q Consensus       377 ~LLpdGrVlv~GG~~~  392 (530)
                      ++  +++|||.||...
T Consensus       314 ~~--~~~i~v~GG~~~  327 (357)
T 2uvk_A          314 PW--NNSLLIIGGETA  327 (357)
T ss_dssp             EE--TTEEEEEEEECG
T ss_pred             Ee--CCEEEEEeeeCC
Confidence            76  999999999653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.95  E-value=2.5e-27  Score=239.94  Aligned_cols=270  Identities=16%  Similarity=0.116  Sum_probs=195.7

Q ss_pred             cCCCCCCCCcEEEccCCc--chheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEE
Q 042680           27 AAPAGGFLGSWELISQNA--GISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFY  104 (530)
Q Consensus        27 ~~~~~~~~g~w~~~~~~~--~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~y  104 (530)
                      ...++...++|+. ...+  .-+.-|+++. .+++||++||......      +. .             ....+..++|
T Consensus        15 ~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~------~~-~-------------~~~~~~~~~~   72 (315)
T 4asc_A           15 AVAYDPAANECYC-ASLSSQVPKNHVSLVT-KENQVFVAGGLFYNED------NK-E-------------DPMSAYFLQF   72 (315)
T ss_dssp             EEEEETTTTEEEE-EECCCCSCSSEEEEEC-TTCCEEEEEEEEECSS------CS-S-------------SCEEEEEEEE
T ss_pred             eEEECCCCCeEec-CCCCCCCCccceEEEE-ECCEEEEEcCcccCCC------CC-c-------------cccccceEEe
Confidence            3445667899987 3433  2577788877 7999999999742210      00 0             0023558899


Q ss_pred             eCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCC----C---CcEEEE-cCCCCCCCceEEecccccccc
Q 042680          105 DYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRD----A---FSYEYV-PVEKESNKAAIAFPFLFETQD  176 (530)
Q Consensus       105 Dp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~----~---~s~E~y-P~~~~~~~~~~~~p~l~~t~d  176 (530)
                      |+.+++|+.++.++..++..+++        +.+++|||+||.+    .   .++++| |.++   +|....++.     
T Consensus        73 d~~~~~W~~~~~~p~~r~~~~~~--------~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~---~W~~~~~~p-----  136 (315)
T 4asc_A           73 DHLDSEWLGMPPLPSPRCLFGLG--------EALNSIYVVGGREIKDGERCLDSVMCYDRLSF---KWGESDPLP-----  136 (315)
T ss_dssp             ETTTTEEEECCCBSSCEESCEEE--------EETTEEEEECCEESSTTCCBCCCEEEEETTTT---EEEECCCCS-----
T ss_pred             cCCCCeEEECCCCCcchhceeEE--------EECCEEEEEeCCcCCCCCcccceEEEECCCCC---cEeECCCCC-----
Confidence            99999999999998665554442        3399999999964    1   468999 8875   455443331     


Q ss_pred             ccCCCCCCCccccccCCccceEEEecCCcEEEEeCc--------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeecc
Q 042680          177 FLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLP  248 (530)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlp  248 (530)
                              .       ..+-|..+..+++||++||.        ++++||+.+++|. .+++||. +|..   .+++.  
T Consensus       137 --------~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~-~r~~---~~~~~--  194 (315)
T 4asc_A          137 --------Y-------VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK-ELAPMQT-ARSL---FGATV--  194 (315)
T ss_dssp             --------S-------CCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEE-ECCCCSS-CCBS---CEEEE--
T ss_pred             --------C-------cccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEE-ECCCCCC-chhc---eEEEE--
Confidence                    1       12346677789999999995        6899999999999 7888884 4443   23332  


Q ss_pred             CCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEE
Q 042680          249 LYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLII  327 (530)
Q Consensus       249 l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlVi  327 (530)
                                ++++||++||.+..            ..++++++||+.  +++|+.. +|+.+|..+.++++ +|+|||+
T Consensus       195 ----------~~~~iyv~GG~~~~------------~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~  249 (315)
T 4asc_A          195 ----------HDGRIIVAAGVTDT------------GLTSSAEVYSIT--DNKWAPFEAFPQERSSLSLVSL-VGTLYAI  249 (315)
T ss_dssp             ----------ETTEEEEEEEECSS------------SEEEEEEEEETT--TTEEEEECCCSSCCBSCEEEEE-TTEEEEE
T ss_pred             ----------ECCEEEEEeccCCC------------CccceEEEEECC--CCeEEECCCCCCcccceeEEEE-CCEEEEE
Confidence                      47899999997522            135679999998  4899998 89999999998886 9999999


Q ss_pred             cCCCCCCCCcccCC---CCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680          328 NGADLGSGGWHCAD---KPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       328 GG~~~g~~g~~~~~---~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      ||... ... ....   .....+++|||+++   +|+.+  ++.+|..|+++++  ++++|+....
T Consensus       250 GG~~~-~~~-~~~~~~~~~~~~v~~yd~~~~---~W~~~--~~~~r~~~~~~~~--~~~l~v~~~~  306 (315)
T 4asc_A          250 GGFAT-LET-ESGELVPTELNDIWRYNEEEK---KWEGV--LREIAYAAGATFL--PVRLNVLRLT  306 (315)
T ss_dssp             EEEEE-EEC-TTSCEEEEEEEEEEEEETTTT---EEEEE--ESCSSCCSSCEEE--EEEECGGGSE
T ss_pred             CCccc-cCc-CCccccccccCcEEEecCCCC---hhhhh--ccCCcCccceEEe--CCEEEEEEeh
Confidence            99741 000 0000   12346899999999   99998  6778999998888  9999998764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.95  E-value=6.9e-27  Score=234.33  Aligned_cols=248  Identities=16%  Similarity=0.180  Sum_probs=188.9

Q ss_pred             CCCCCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCC
Q 042680           30 AGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKN  109 (530)
Q Consensus        30 ~~~~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~  109 (530)
                      .+...++|+.+.....-+..|.++. .++++|++||....           .               +....++||+.++
T Consensus        36 ~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~-----------~---------------~~~~~~~~d~~~~   88 (301)
T 2vpj_A           36 YDPKTQEWSFLPSITRKRRYVASVS-LHDRIYVIGGYDGR-----------S---------------RLSSVECLDYTAD   88 (301)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSS-----------C---------------BCCCEEEEETTCC
T ss_pred             EcCCCCeEEeCCCCChhhccccEEE-ECCEEEEEcCCCCC-----------c---------------cCceEEEEECCCC
Confidence            4455789999876666677787777 79999999997521           1               2356889999999


Q ss_pred             c---EEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCC
Q 042680          110 A---VKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERP  181 (530)
Q Consensus       110 ~---w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~  181 (530)
                      +   |+.++.++..++..+++        ..+|+|||+||.+.    .++|.| |.++   +|....++..         
T Consensus        89 ~~~~W~~~~~~p~~r~~~~~~--------~~~~~lyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~---------  148 (301)
T 2vpj_A           89 EDGVWYSVAPMNVRRGLAGAT--------TLGDMIYVSGGFDGSRRHTSMERYDPNID---QWSMLGDMQT---------  148 (301)
T ss_dssp             TTCCCEEECCCSSCCBSCEEE--------EETTEEEEECCBCSSCBCCEEEEEETTTT---EEEEEEECSS---------
T ss_pred             CCCeeEECCCCCCCccceeEE--------EECCEEEEEcccCCCcccceEEEEcCCCC---eEEECCCCCC---------
Confidence            9   99999887655544442        33999999999764    368999 8875   5655443321         


Q ss_pred             CCCCccccccCCccceEEEecCCcEEEEeC-------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCC
Q 042680          182 GNPKGRFRLENNLYPFVYLLPDGNVYVFAN-------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRD  254 (530)
Q Consensus       182 ~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg-------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~  254 (530)
                        +  |       +.+..+..+|+||++||       +++++||+.+++|. .+++||. +|..   .+++.        
T Consensus       149 --~--r-------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~p~-~r~~---~~~~~--------  204 (301)
T 2vpj_A          149 --A--R-------EGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWT-NVTPMAT-KRSG---AGVAL--------  204 (301)
T ss_dssp             --C--C-------BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE-EECCCSS-CCBS---CEEEE--------
T ss_pred             --C--c-------ccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEE-eCCCCCc-cccc---ceEEE--------
Confidence              1  1       23556677999999998       36899999999999 7888874 4442   22332        


Q ss_pred             CCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCC
Q 042680          255 TYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLG  333 (530)
Q Consensus       255 ~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g  333 (530)
                          .+++||++||.+..            ..++++++||+.  +++|+.. +|+.+|..+.++++ +|+|||+||... 
T Consensus       205 ----~~~~i~v~GG~~~~------------~~~~~v~~yd~~--~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~-  264 (301)
T 2vpj_A          205 ----LNDHIYVVGGFDGT------------AHLSSVEAYNIR--TDSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYDG-  264 (301)
T ss_dssp             ----ETTEEEEECCBCSS------------SBCCCEEEEETT--TTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCS-
T ss_pred             ----ECCEEEEEeCCCCC------------cccceEEEEeCC--CCcEEECCCCCCcccceeEEEE-CCEEEEEcCcCC-
Confidence                37899999997622            136789999998  4899987 89999999998886 999999999751 


Q ss_pred             CCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCccccccee
Q 042680          334 SGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANL  378 (530)
Q Consensus       334 ~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~L  378 (530)
                             ......+++|||+++   +|+.+++|+.+|..|+++++
T Consensus       265 -------~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~  299 (301)
T 2vpj_A          265 -------NSLLSSIECYDPIID---SWEVVTSMGTQRCDAGVCVL  299 (301)
T ss_dssp             -------SSBEEEEEEEETTTT---EEEEEEEEEEEEESCEEEEE
T ss_pred             -------CcccccEEEEcCCCC---eEEEcCCCCcccccceEEEe
Confidence                   123457899999999   99999999999999997776

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.95  E-value=9.4e-27  Score=236.02  Aligned_cols=272  Identities=15%  Similarity=0.132  Sum_probs=193.7

Q ss_pred             cCCCCCCCCcEEEccCCc-chheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEe
Q 042680           27 AAPAGGFLGSWELISQNA-GISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYD  105 (530)
Q Consensus        27 ~~~~~~~~g~w~~~~~~~-~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yD  105 (530)
                      ...++...++|....... .-+..|+++. .+++||++||...+..      +  .            ........+.||
T Consensus        26 ~~~yd~~~~~W~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~------~--~------------~~~~~~~~~~~d   84 (318)
T 2woz_A           26 AVAYDPMENECYLTALAEQIPRNHSSIVT-QQNQVYVVGGLYVDEE------N--K------------DQPLQSYFFQLD   84 (318)
T ss_dssp             EEEEETTTTEEEEEEECTTSCSSEEEEEC-SSSCEEEEESSCC---------------------------CCCBEEEEEE
T ss_pred             eEEECCCCCceecccCCccCCccceEEEE-ECCEEEEECCcccCcc------c--c------------CCCccccEEEEe
Confidence            455667789999843221 3356777777 8999999999642110      1  0            000234578999


Q ss_pred             CCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC------CcEEEE-cCCCCCCCceEEecccccccccc
Q 042680          106 YNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA------FSYEYV-PVEKESNKAAIAFPFLFETQDFL  178 (530)
Q Consensus       106 p~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~------~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~  178 (530)
                      +.+++|+.++.|+..++..+++        ..+++|||+||.+.      .++|+| |.++   +|....++..      
T Consensus        85 ~~~~~W~~~~~~p~~r~~~~~~--------~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~------  147 (318)
T 2woz_A           85 NVSSEWVGLPPLPSARCLFGLG--------EVDDKIYVVAGKDLQTEASLDSVLCYDPVAA---KWSEVKNLPI------  147 (318)
T ss_dssp             TTTTEEEECSCBSSCBCSCEEE--------EETTEEEEEEEEBTTTCCEEEEEEEEETTTT---EEEEECCCSS------
T ss_pred             CCCCcEEECCCCCccccccceE--------EECCEEEEEcCccCCCCcccceEEEEeCCCC---CEeECCCCCC------
Confidence            9999999999988666544442        33999999999752      368999 8875   5655443311      


Q ss_pred             CCCCCCCccccccCCccceEEEecCCcEEEEeCc--------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCC
Q 042680          179 ERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLY  250 (530)
Q Consensus       179 ~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~  250 (530)
                             .|       +-|..+..+|+||++||.        ++++||+.+++|. .+++||. +|..   .+++.    
T Consensus       148 -------~r-------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~-~r~~---~~~~~----  204 (318)
T 2woz_A          148 -------KV-------YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK-DLAPMKT-PRSM---FGVAI----  204 (318)
T ss_dssp             -------CE-------ESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE-EECCCSS-CCBS---CEEEE----
T ss_pred             -------cc-------cccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE-ECCCCCC-Cccc---ceEEE----
Confidence                   12       346667789999999994        5899999999999 7888873 4543   22332    


Q ss_pred             CCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcC
Q 042680          251 LPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIING  329 (530)
Q Consensus       251 ~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG  329 (530)
                              .+++||++||.+..            ..++++++||+.  +++|+.. +||.+|..+.++++ +|+|||+||
T Consensus       205 --------~~~~iyv~GG~~~~------------~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG  261 (318)
T 2woz_A          205 --------HKGKIVIAGGVTED------------GLSASVEAFDLK--TNKWEVMTEFPQERSSISLVSL-AGSLYAIGG  261 (318)
T ss_dssp             --------ETTEEEEEEEEETT------------EEEEEEEEEETT--TCCEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             --------ECCEEEEEcCcCCC------------CccceEEEEECC--CCeEEECCCCCCcccceEEEEE-CCEEEEECC
Confidence                    37899999997622            124678999998  4899998 89999999988876 999999999


Q ss_pred             CCCCCCCcc-cCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          330 ADLGSGGWH-CADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       330 ~~~g~~g~~-~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      ........+ ........+++|||+++   +|+.+  ++.+|..|+++++  +++||+...
T Consensus       262 ~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~--~~~~r~~~~~~~~--~~~iyi~~~  315 (318)
T 2woz_A          262 FAMIQLESKEFAPTEVNDIWKYEDDKK---EWAGM--LKEIRYASGASCL--ATRLNLFKL  315 (318)
T ss_dssp             BCCBC----CCBCCBCCCEEEEETTTT---EEEEE--ESCCGGGTTCEEE--EEEEEGGGC
T ss_pred             eeccCCCCceeccceeeeEEEEeCCCC---Eehhh--cccccccccceee--CCEEEEEEe
Confidence            752100000 00123457899999999   99998  7889999998888  999998753

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.95  E-value=3e-26  Score=232.29  Aligned_cols=241  Identities=17%  Similarity=0.151  Sum_probs=172.9

Q ss_pred             EEEEeCCCCcEEEccccC-CcccccceeccCCcEEEccCCeEEEeccCC----C------CcEEEE-cCCCCCCCceEEe
Q 042680          101 SIFYDYNKNAVKALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRD----A------FSYEYV-PVEKESNKAAIAF  168 (530)
Q Consensus       101 ~~~yDp~t~~w~~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~----~------~s~E~y-P~~~~~~~~~~~~  168 (530)
                      .++|||.+++|....... .+++..++        ++.+++|||+||..    .      ..++.| |.++   +|....
T Consensus        26 ~~~yd~~~~~W~~~~~~~~~~r~~~~~--------~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~---~W~~~~   94 (318)
T 2woz_A           26 AVAYDPMENECYLTALAEQIPRNHSSI--------VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS---EWVGLP   94 (318)
T ss_dssp             EEEEETTTTEEEEEEECTTSCSSEEEE--------ECSSSCEEEEESSCC-------CCCBEEEEEETTTT---EEEECS
T ss_pred             eEEECCCCCceecccCCccCCccceEE--------EEECCEEEEECCcccCccccCCCccccEEEEeCCCC---cEEECC
Confidence            579999999999853321 33433333        24599999999952    1      127888 8765   454433


Q ss_pred             ccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc---------eEEEEeCCCCeEEEEccCCCCCCCccC
Q 042680          169 PFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN---------RSVVHDPKANKIIREFPQLPGGARSYP  239 (530)
Q Consensus       169 p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~---------~~e~yDp~tn~w~~~~p~mp~~~r~yp  239 (530)
                      ++. .          +  |       +-|..++.+++||++||.         ++++||+.+++|. .+++||. +|.. 
T Consensus        95 ~~p-~----------~--r-------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~-~r~~-  151 (318)
T 2woz_A           95 PLP-S----------A--R-------CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS-EVKNLPI-KVYG-  151 (318)
T ss_dssp             CBS-S----------C--B-------CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE-EECCCSS-CEES-
T ss_pred             CCC-c----------c--c-------cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEe-ECCCCCC-cccc-
Confidence            321 1          1  1       235667779999999983         5899999999999 7888884 3442 


Q ss_pred             CCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeee
Q 042680          240 ATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVL  318 (530)
Q Consensus       240 ~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vv  318 (530)
                        .+++.            .+++||++||...+.           ..++++++||+.  +++|+.. +|+.+|..+.+++
T Consensus       152 --~~~~~------------~~~~iyv~GG~~~~~-----------~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~  204 (318)
T 2woz_A          152 --HNVIS------------HNGMIYCLGGKTDDK-----------KCTNRVFIYNPK--KGDWKDLAPMKTPRSMFGVAI  204 (318)
T ss_dssp             --CEEEE------------ETTEEEEECCEESSS-----------CBCCCEEEEETT--TTEEEEECCCSSCCBSCEEEE
T ss_pred             --cEEEE------------ECCEEEEEcCCCCCC-----------CccceEEEEcCC--CCEEEECCCCCCCcccceEEE
Confidence              22331            379999999975221           246789999998  4899998 9999999999888


Q ss_pred             ecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccc
Q 042680          319 LPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEF  398 (530)
Q Consensus       319 LpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~  398 (530)
                      + +|+|||+||...        ......+++|||+++   +|+.+++++.+|..|+++++  +++|||.||....... .
T Consensus       205 ~-~~~iyv~GG~~~--------~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~-~  269 (318)
T 2woz_A          205 H-KGKIVIAGGVTE--------DGLSASVEAFDLKTN---KWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLE-S  269 (318)
T ss_dssp             E-TTEEEEEEEEET--------TEEEEEEEEEETTTC---CEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----
T ss_pred             E-CCEEEEEcCcCC--------CCccceEEEEECCCC---eEEECCCCCCcccceEEEEE--CCEEEEECCeeccCCC-C
Confidence            6 999999999752        112447899999999   99999999999999998877  9999999996532100 0


Q ss_pred             cCC--CCcceEEEEcCCCCCC
Q 042680          399 AKF--PTELRLEKFTPPYLAP  417 (530)
Q Consensus       399 ~~~--~t~~~vE~y~Ppyl~~  417 (530)
                      +.+  .....+++|+|.....
T Consensus       270 ~~~~~~~~~~v~~yd~~~~~W  290 (318)
T 2woz_A          270 KEFAPTEVNDIWKYEDDKKEW  290 (318)
T ss_dssp             -CCBCCBCCCEEEEETTTTEE
T ss_pred             ceeccceeeeEEEEeCCCCEe
Confidence            110  0134699999987643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.94  E-value=3.2e-26  Score=231.75  Aligned_cols=239  Identities=15%  Similarity=0.116  Sum_probs=173.0

Q ss_pred             EEEEeCCCCcEEEccccC--CcccccceeccCCcEEEccCCeEEEeccCC----C------CcEEEE-cCCCCCCCceEE
Q 042680          101 SIFYDYNKNAVKALKVQS--DTWCSSGGLSADGRLVMLSDGSFLVYGGRD----A------FSYEYV-PVEKESNKAAIA  167 (530)
Q Consensus       101 ~~~yDp~t~~w~~l~~~~--~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~----~------~s~E~y-P~~~~~~~~~~~  167 (530)
                      .+.|||.+++|+. ..++  ..++..++        ++.+++|||+||..    .      ..++.| |.++   +|...
T Consensus        15 ~~~yd~~~~~W~~-~~~~~p~~r~~~~~--------~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~---~W~~~   82 (315)
T 4asc_A           15 AVAYDPAANECYC-ASLSSQVPKNHVSL--------VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS---EWLGM   82 (315)
T ss_dssp             EEEEETTTTEEEE-EECCCCSCSSEEEE--------ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT---EEEEC
T ss_pred             eEEECCCCCeEec-CCCCCCCCccceEE--------EEECCEEEEEcCcccCCCCCccccccceEEecCCCC---eEEEC
Confidence            6799999999987 4443  23333333        24499999999951    1      137888 8875   45433


Q ss_pred             eccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc----------eEEEEeCCCCeEEEEccCCCCCCCc
Q 042680          168 FPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN----------RSVVHDPKANKIIREFPQLPGGARS  237 (530)
Q Consensus       168 ~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~----------~~e~yDp~tn~w~~~~p~mp~~~r~  237 (530)
                      .++. .            .|       +-|..+..+++||++||.          ++++||+.+++|. .+++||. +|.
T Consensus        83 ~~~p-~------------~r-------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~-~r~  140 (315)
T 4asc_A           83 PPLP-S------------PR-------CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG-ESDPLPY-VVY  140 (315)
T ss_dssp             CCBS-S------------CE-------ESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEE-ECCCCSS-CCB
T ss_pred             CCCC-c------------ch-------hceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEe-ECCCCCC-ccc
Confidence            3321 1            12       235667779999999993          4899999999999 7888884 444


Q ss_pred             cCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCcccccee
Q 042680          238 YPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADG  316 (530)
Q Consensus       238 yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~  316 (530)
                      .   .+++.            .+++||++||...+.           ..++++++||+.  +++|+.. +||.+|..+.+
T Consensus       141 ~---~~~~~------------~~~~iyv~GG~~~~~-----------~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~  192 (315)
T 4asc_A          141 G---HTVLS------------HMDLVYVIGGKGSDR-----------KCLNKMCVYDPK--KFEWKELAPMQTARSLFGA  192 (315)
T ss_dssp             S---CEEEE------------ETTEEEEECCBCTTS-----------CBCCCEEEEETT--TTEEEECCCCSSCCBSCEE
T ss_pred             c---eeEEE------------ECCEEEEEeCCCCCC-----------cccceEEEEeCC--CCeEEECCCCCCchhceEE
Confidence            3   22332            378999999974221           346789999998  4899998 89999999998


Q ss_pred             eeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCc
Q 042680          317 VLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYF  396 (530)
Q Consensus       317 vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~  396 (530)
                      +++ +++|||+||...        ......+++|||+++   +|+.+++++.+|..|+++++  +++|||.||...... 
T Consensus       193 ~~~-~~~iyv~GG~~~--------~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~-  257 (315)
T 4asc_A          193 TVH-DGRIIVAAGVTD--------TGLTSSAEVYSITDN---KWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLET-  257 (315)
T ss_dssp             EEE-TTEEEEEEEECS--------SSEEEEEEEEETTTT---EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEEC-
T ss_pred             EEE-CCEEEEEeccCC--------CCccceEEEEECCCC---eEEECCCCCCcccceeEEEE--CCEEEEECCccccCc-
Confidence            886 999999999752        112457899999999   99999999999999998877  999999999632100 


Q ss_pred             cccCC--CCcceEEEEcCCCCC
Q 042680          397 EFAKF--PTELRLEKFTPPYLA  416 (530)
Q Consensus       397 ~~~~~--~t~~~vE~y~Ppyl~  416 (530)
                      ..+.+  ....++|+|+|..-.
T Consensus       258 ~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          258 ESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             TTSCEEEEEEEEEEEEETTTTE
T ss_pred             CCccccccccCcEEEecCCCCh
Confidence            00111  013469999998754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.90  E-value=7.8e-23  Score=228.32  Aligned_cols=249  Identities=16%  Similarity=0.157  Sum_probs=163.8

Q ss_pred             EEEEeCCCCcEEEccccCCcccccceeccCCcEEEcc-CCeEEEeccCCC----------CcEEEE-cCCCCCCCceEEe
Q 042680          101 SIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLS-DGSFLVYGGRDA----------FSYEYV-PVEKESNKAAIAF  168 (530)
Q Consensus       101 ~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~-dG~v~VvGG~~~----------~s~E~y-P~~~~~~~~~~~~  168 (530)
                      ...|||.+++|+++..++... .+++        .++ +|+|||+||.+.          ..+++| |.++   +|....
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~~-~~~a--------v~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~---~w~~~~  235 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIVP-AAAA--------IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG---IVSDRT  235 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSCC-SEEE--------EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC---CBCCCE
T ss_pred             cccCCCCCCeeeeeccCCCCc-eeEE--------EEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC---cEEeCc
Confidence            456899999999998886532 2222        355 999999999753          157888 8875   454333


Q ss_pred             ccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc---eEEEEeCCCCeEEEEccCCCCCCCccCCCceEe
Q 042680          169 PFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN---RSVVHDPKANKIIREFPQLPGGARSYPATGTSV  245 (530)
Q Consensus       169 p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~---~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~sv  245 (530)
                      ++..           ++.++      ...+.++.||+||++||.   ++++||+.+++|+ .+++||. +|.+   .+++
T Consensus       236 ~~~~-----------~~~~~------~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~-~~~~~~~-~R~~---~s~~  293 (656)
T 1k3i_A          236 VTVT-----------KHDMF------CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI-PGPDMQV-ARGY---QSSA  293 (656)
T ss_dssp             EEEC-----------SCCCS------SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE-ECCCCSS-CCSS---CEEE
T ss_pred             ccCC-----------CCCCc------cccccCCCCCCEEEeCCCCCCceEEecCcCCcee-ECCCCCc-cccc---cceE
Confidence            3311           11111      122455689999999994   6899999999999 7899984 5665   3344


Q ss_pred             eccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec------CCCCc---------
Q 042680          246 LLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE------KMPAP---------  310 (530)
Q Consensus       246 mlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~------~M~~~---------  310 (530)
                      .++           +++|||+||...+.           ..++++++|||.  +++|+..      +|+.+         
T Consensus       294 ~~~-----------dg~iyv~GG~~~~~-----------~~~~~~e~yd~~--t~~W~~~~~~~~~p~~~~~~~~~~~~~  349 (656)
T 1k3i_A          294 TMS-----------DGRVFTIGGSWSGG-----------VFEKNGEVYSPS--SKTWTSLPNAKVNPMLTADKQGLYRSD  349 (656)
T ss_dssp             ECT-----------TSCEEEECCCCCSS-----------SCCCCEEEEETT--TTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             Eec-----------CCeEEEEeCcccCC-----------cccccceEeCCC--CCcceeCCCccccccccccccceeecC
Confidence            332           79999999953121           134567777776  3667652      33332         


Q ss_pred             ------------------------------------------------cccceeeee--cCCeEEEEcCCCCCCCCcccC
Q 042680          311 ------------------------------------------------RTMADGVLL--PNGEVLIINGADLGSGGWHCA  340 (530)
Q Consensus       311 ------------------------------------------------R~~~~~vvL--pdG~VlViGG~~~g~~g~~~~  340 (530)
                                                                      |..+.++++  .+|+|||+||... ..+. ..
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~-~~~~-~~  427 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD-YQDS-DA  427 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS-SSSS-BC
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC-CCCC-Cc
Confidence                                                            234555543  4899999999642 1110 01


Q ss_pred             CCCCcccEEecCCCCCCCceEEec--CCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCC
Q 042680          341 DKPSLKPMLYRPNAPEGQRFAELA--PTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYL  415 (530)
Q Consensus       341 ~~p~~~~eiYDP~t~~g~~Wt~la--~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl  415 (530)
                      .+....+++|||.++   +|+.+.  +|+.+|..|++ ++++||+|||.||..... .+.+.. ...++|+|+|..-
T Consensus       428 ~~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~-~~l~~g~i~v~GG~~~~~-~~~~~~-~~~~v~~ydp~t~  498 (656)
T 1k3i_A          428 TTNAHIITLGEPGTS---PNTVFASNGLYFARTFHTS-VVLPDGSTFITGGQRRGI-PFEDST-PVFTPEIYVPEQD  498 (656)
T ss_dssp             CCCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEE-EECTTSCEEEECCBSBCC-TTCCCS-BCCCCEEEEGGGT
T ss_pred             CCcceEEEcCCCCCC---CeeEEccCCCCCCcccCCe-EECCCCCEEEECCcccCc-CcCCCC-cccceEEEcCCCC
Confidence            111236889999999   999987  99999999975 455899999999964321 001111 1357999999763

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.90  E-value=2.5e-22  Score=226.30  Aligned_cols=260  Identities=10%  Similarity=0.070  Sum_probs=172.6

Q ss_pred             cEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEcc
Q 042680           36 SWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALK  115 (530)
Q Consensus        36 ~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~  115 (530)
                      +|.........+.-|+++  .+++||++||...  .                         +.+..++||+.+++|+.++
T Consensus       378 ~~~~~~~~p~rr~g~~~~--~~~~iyv~GG~~~--~-------------------------~~~~v~~yd~~~~~W~~~~  428 (695)
T 2zwa_A          378 QLLECECPINRKFGDVDV--AGNDVFYMGGSNP--Y-------------------------RVNEILQLSIHYDKIDMKN  428 (695)
T ss_dssp             EEEECCCTTCCBSCEEEE--CSSCEEEECCBSS--S-------------------------BCCCEEEEEECSSCEEEEE
T ss_pred             eEeccCCCCCCceeEEEE--ECCEEEEECCCCC--C-------------------------CcCcEEEEECCCCeEEEec
Confidence            344432222334444444  5899999999642  1                         1255789999999999998


Q ss_pred             -c-----cC-CcccccceeccCCcEEEcc-CCeEEEeccCCC-----CcEEEE-cCCCCCCCceEEeccccccccccCCC
Q 042680          116 -V-----QS-DTWCSSGGLSADGRLVMLS-DGSFLVYGGRDA-----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERP  181 (530)
Q Consensus       116 -~-----~~-~~~~~~~~~l~dG~l~~L~-dG~v~VvGG~~~-----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~  181 (530)
                       .     |+ .+.+++.+        .+. +|+|||+||.+.     .++|+| |.++   +|....++..         
T Consensus       429 ~~~p~~~~p~~R~~hs~~--------~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~---~W~~~~~~p~---------  488 (695)
T 2zwa_A          429 IEVSSSEVPVARMCHTFT--------TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR---EWSMIKSLSH---------  488 (695)
T ss_dssp             CCCCCSCCCCCCBSCEEE--------EETTTTEEEEECCBSSTTCBCCCCEEEETTTT---EEEECCCCSB---------
T ss_pred             cCCCCCCCCccccceEEE--------EEccCCEEEEEcCCCCCCCccccEEEEeCCCC---cEEECCCCCC---------
Confidence             5     44 44454443        344 999999999864     368999 8875   4655444321         


Q ss_pred             CCCCccccccCCccceEEEe-cCCcEEEEeCc----eEEEEeCCCCeEEEEccC---CCCCCCccCCCceEeeccCCCCC
Q 042680          182 GNPKGRFRLENNLYPFVYLL-PDGNVYVFANN----RSVVHDPKANKIIREFPQ---LPGGARSYPATGTSVLLPLYLPR  253 (530)
Q Consensus       182 ~~~~~~~~~~~~~Yp~~~ll-p~G~lfv~Gg~----~~e~yDp~tn~w~~~~p~---mp~~~r~yp~~g~svmlpl~~~~  253 (530)
                        +  |       +-|..++ .+|+||++||.    ++++||+.+++|. .+++   +|. +|..   .+++.+.     
T Consensus       489 --~--R-------~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~-~r~~---~~a~v~~-----  547 (695)
T 2zwa_A          489 --T--R-------FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQ-NSLV---SAGLEFD-----  547 (695)
T ss_dssp             --C--C-------BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGG-SCCB---SCEEEEE-----
T ss_pred             --C--c-------ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCC-cccc---eeEEEEe-----
Confidence              1  2       2355555 59999999996    6899999999999 6765   442 3332   2223221     


Q ss_pred             CCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCc------ceec-CC-CCccccceeeeecCCeEE
Q 042680          254 DTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPE------WKIE-KM-PAPRTMADGVLLPNGEVL  325 (530)
Q Consensus       254 ~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~------W~~~-~M-~~~R~~~~~vvLpdG~Vl  325 (530)
                        .  ..++|||+||...+.          ...++++++||+..  ++      |+.. +| +.+|..+.++++.||+||
T Consensus       548 --~--~~~~iyv~GG~~~~~----------~~~~~~v~~yd~~~--~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iy  611 (695)
T 2zwa_A          548 --P--VSKQGIILGGGFMDQ----------TTVSDKAIIFKYDA--ENATEPITVIKKLQHPLFQRYGSQIKYITPRKLL  611 (695)
T ss_dssp             --T--TTTEEEEECCBCTTS----------SCBCCEEEEEEECT--TCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEE
T ss_pred             --C--CCCEEEEECCcCCCC----------CeeeCcEEEEEccC--CccccceEEEEcCCCCCCCcccceEEEeCCCEEE
Confidence              0  138999999975221          12467899999984  77      8876 66 589999998887449999


Q ss_pred             EEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCC--------CCcccccceecCCCeEEEcCCCC
Q 042680          326 IINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDI--------PRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       326 ViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~--------~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      |+||.....     .......+++|||.++   +|+.+. ++.        .|..|++ +.+.||+|||.||..
T Consensus       612 v~GG~~~~~-----~~~~~~~v~~yd~~t~---~W~~~~-~p~~~~~~~~p~~~gh~~-~~~~~g~i~v~GGg~  675 (695)
T 2zwa_A          612 IVGGTSPSG-----LFDRTNSIISLDPLSE---TLTSIP-ISRRIWEDHSLMLAGFSL-VSTSMGTIHIIGGGA  675 (695)
T ss_dssp             EECCBCSSC-----CCCTTTSEEEEETTTT---EEEECC-CCHHHHHHSCCCCSSCEE-ECC---CEEEECCEE
T ss_pred             EECCccCCC-----CCCCCCeEEEEECCCC---eEEEee-ccccccCCCCccceeeeE-EEeCCCEEEEEeCCc
Confidence            999975211     0123568999999999   999542 211        2455774 445678999999964

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.88  E-value=1.5e-21  Score=200.28  Aligned_cols=254  Identities=12%  Similarity=0.114  Sum_probs=166.1

Q ss_pred             CCcEEEccCCc-chheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEE
Q 042680           34 LGSWELISQNA-GISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVK  112 (530)
Q Consensus        34 ~g~w~~~~~~~-~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~  112 (530)
                      ..+|+.+..+. .-+..|+++. .+++||++||.....      +++ .              .+.+..++||+.+++|+
T Consensus        42 ~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~------~~~-~--------------~~~~~v~~yd~~~~~W~   99 (357)
T 2uvk_A           42 DKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNS------EGL-T--------------QVFNDVHKYNPKTNSWV   99 (357)
T ss_dssp             SCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECT------TSC-E--------------EECCCEEEEETTTTEEE
T ss_pred             CCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCC------Ccc-c--------------eeeccEEEEeCCCCcEE
Confidence            37899998766 4677787777 799999999973210      010 0              13467899999999999


Q ss_pred             EccccC-CcccccceeccCCcEEEccCCeEEEeccCCC--------------------------------------CcEE
Q 042680          113 ALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRDA--------------------------------------FSYE  153 (530)
Q Consensus       113 ~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~--------------------------------------~s~E  153 (530)
                      .++.|. ..++..+++        ..+|+|||+||.+.                                      .++|
T Consensus       100 ~~~~~~p~~r~~~~~~--------~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  171 (357)
T 2uvk_A          100 KLMSHAPMGMAGHVTF--------VHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL  171 (357)
T ss_dssp             ECSCCCSSCCSSEEEE--------EETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred             ECCCCCCcccccceEE--------EECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence            999887 444443332        34999999999752                                      4789


Q ss_pred             EE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc--------eEEEEeC--CCC
Q 042680          154 YV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--------RSVVHDP--KAN  222 (530)
Q Consensus       154 ~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--------~~e~yDp--~tn  222 (530)
                      +| |.++   +|....++...                   ..+-+..+..+++||++||.        .+++||+  .++
T Consensus       172 ~yd~~~~---~W~~~~~~p~~-------------------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~  229 (357)
T 2uvk_A          172 SFDPSTQ---QWSYAGESPWY-------------------GTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL  229 (357)
T ss_dssp             EEETTTT---EEEEEEECSSC-------------------CCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred             EEeCCCC---cEEECCCCCCC-------------------CcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence            99 8875   56655443210                   11225567779999999993        4677876  999


Q ss_pred             eEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccc-----ccccccCCcEEEEEcCC
Q 042680          223 KIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEE-----KRFVNALDDCARMVVTS  297 (530)
Q Consensus       223 ~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~-----~~~~~a~~s~~~~dp~~  297 (530)
                      +|. .+++||. +|... ..+++.            .+++|||+||.+..........     ......+.++++||+. 
T Consensus       230 ~W~-~~~~~~~-~~~~~-~~~~~~------------~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~-  293 (357)
T 2uvk_A          230 KWN-KLAPVSS-PDGVA-GGFAGI------------SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH-  293 (357)
T ss_dssp             EEE-ECCCSST-TTCCB-SCEEEE------------ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-
T ss_pred             cEE-ecCCCCC-Ccccc-cceEEE------------ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC-
Confidence            999 7888863 33221 122332            3789999999752210000000     0001224578999998 


Q ss_pred             CCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCC
Q 042680          298 PNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD  367 (530)
Q Consensus       298 ~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~  367 (530)
                       +++|+.. +||.+|..+.++++ +|+|||+||.+..       ......+++|+-+++   +|.++.+.+
T Consensus       294 -~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~-------~~~~~~v~~l~~~~~---~~~~~~~~~  352 (357)
T 2uvk_A          294 -NGKWDKSGELSQGRAYGVSLPW-NNSLLIIGGETAG-------GKAVTDSVLITVKDN---KVTVQNLEH  352 (357)
T ss_dssp             ----CEEEEECSSCCBSSEEEEE-TTEEEEEEEECGG-------GCEEEEEEEEEC-CC---SCEEEC---
T ss_pred             -CCceeeCCCCCCCcccceeEEe-CCEEEEEeeeCCC-------CCEeeeEEEEEEcCc---EeEeeeccc
Confidence             4899998 99999999988875 9999999997521       112457888999999   999876554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.84  E-value=8.8e-20  Score=205.56  Aligned_cols=213  Identities=15%  Similarity=0.166  Sum_probs=152.4

Q ss_pred             cCCeEEEeccCCC---CcEEEE-cCCCCCCCceEEe-ccccccccccCCCCCCCccccccCCccceEEEec--CCcEEEE
Q 042680          137 SDGSFLVYGGRDA---FSYEYV-PVEKESNKAAIAF-PFLFETQDFLERPGNPKGRFRLENNLYPFVYLLP--DGNVYVF  209 (530)
Q Consensus       137 ~dG~v~VvGG~~~---~s~E~y-P~~~~~~~~~~~~-p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp--~G~lfv~  209 (530)
                      .+++|||+||.+.   .++++| |.++   +|.... ++-...        .+..|       +-|..++.  +|+||++
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~---~W~~~~~~~p~~~--------~p~~R-------~~hs~~~~~~~~~lyv~  457 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYD---KIDMKNIEVSSSE--------VPVAR-------MCHTFTTISRNNQLLLI  457 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSS---CEEEEECCCCCSC--------CCCCC-------BSCEEEEETTTTEEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCC---eEEEeccCCCCCC--------CCccc-------cceEEEEEccCCEEEEE
Confidence            4999999999753   468899 8875   455443 321000        01112       23555666  9999999


Q ss_pred             eC--------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccc
Q 042680          210 AN--------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEK  281 (530)
Q Consensus       210 Gg--------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~  281 (530)
                      ||        +++++||+.+++|. .+++||. +|..   .+++++           .+++|||+||.+..         
T Consensus       458 GG~~~~~~~~~dv~~yd~~t~~W~-~~~~~p~-~R~~---h~~~~~-----------~~~~iyv~GG~~~~---------  512 (695)
T 2zwa_A          458 GGRKAPHQGLSDNWIFDMKTREWS-MIKSLSH-TRFR---HSACSL-----------PDGNVLILGGVTEG---------  512 (695)
T ss_dssp             CCBSSTTCBCCCCEEEETTTTEEE-ECCCCSB-CCBS---CEEEEC-----------TTSCEEEECCBCSS---------
T ss_pred             cCCCCCCCccccEEEEeCCCCcEE-ECCCCCC-Cccc---ceEEEE-----------cCCEEEEECCCCCC---------
Confidence            99        35899999999999 7888883 4543   333322           27999999997511         


Q ss_pred             cccccCCcEEEEEcCCCCCcceec-C---CCCccccceeeeecC---CeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          282 RFVNALDDCARMVVTSPNPEWKIE-K---MPAPRTMADGVLLPN---GEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       282 ~~~~a~~s~~~~dp~~~~~~W~~~-~---M~~~R~~~~~vvLpd---G~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                         .   ++++||+.  +++|+.. +   ||.+|..++++++ +   |+|||+||....      .......+++|||.+
T Consensus       513 ---~---~v~~yd~~--t~~W~~~~~~g~~p~~r~~~~a~v~-~~~~~~iyv~GG~~~~------~~~~~~~v~~yd~~~  577 (695)
T 2zwa_A          513 ---P---AMLLYNVT--EEIFKDVTPKDEFFQNSLVSAGLEF-DPVSKQGIILGGGFMD------QTTVSDKAIIFKYDA  577 (695)
T ss_dssp             ---C---SEEEEETT--TTEEEECCCSSGGGGSCCBSCEEEE-ETTTTEEEEECCBCTT------SSCBCCEEEEEEECT
T ss_pred             ---C---CEEEEECC--CCceEEccCCCCCCCcccceeEEEE-eCCCCEEEEECCcCCC------CCeeeCcEEEEEccC
Confidence               1   78999998  4999986 4   9999999987775 5   899999997521      112345789999999


Q ss_pred             CCCCc------eEEecCC-CCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCC
Q 042680          355 PEGQR------FAELAPT-DIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLA  416 (530)
Q Consensus       355 ~~g~~------Wt~la~~-~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~  416 (530)
                      +   +      |+.+.++ ..+|..|+++++ .||+|||.||.....     .......+|+|+|....
T Consensus       578 ~---~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~-----~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          578 E---NATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSG-----LFDRTNSIISLDPLSET  637 (695)
T ss_dssp             T---CSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSC-----CCCTTTSEEEEETTTTE
T ss_pred             C---ccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCC-----CCCCCCeEEEEECCCCe
Confidence            9   8      8988886 589999987766 339999999964321     11113569999998754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.79  E-value=0.012  Score=57.80  Aligned_cols=106  Identities=9%  Similarity=-0.075  Sum_probs=53.4

Q ss_pred             eeEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCe-EEEeccCCCCcEEEE-cCCCCCCCceEEecccccccc
Q 042680           99 CHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGS-FLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQD  176 (530)
Q Consensus        99 a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~-v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d  176 (530)
                      .....+|+.+.+....-..... ..+.+        .-+||+ +|+.+.. ...+.+| +.+.   +.....+.- ... 
T Consensus        69 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~--------~s~dg~~l~v~~~~-~~~v~~~d~~~~---~~~~~~~~~-~~~-  133 (353)
T 3vgz_A           69 GVVYRLDPVTLEVTQAIHNDLK-PFGAT--------INNTTQTLWFGNTV-NSAVTAIDAKTG---EVKGRLVLD-DRK-  133 (353)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-CCSEE--------EETTTTEEEEEETT-TTEEEEEETTTC---CEEEEEESC-CCC-
T ss_pred             ccEEEEcCCCCeEEEEEecCCC-cceEE--------ECCCCCEEEEEecC-CCEEEEEeCCCC---eeEEEEecC-CCc-
Confidence            5578899988875443222211 11222        245776 5555543 3467777 6653   121122110 000 


Q ss_pred             ccCCCCCCCccccccCCccce-EEEecCCc-EEEEe---CceEEEEeCCCCeEEEEcc
Q 042680          177 FLERPGNPKGRFRLENNLYPF-VYLLPDGN-VYVFA---NNRSVVHDPKANKIIREFP  229 (530)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~Yp~-~~llp~G~-lfv~G---g~~~e~yDp~tn~w~~~~p  229 (530)
                            .+.  .  .....|+ +...++|+ ||+.+   .....+||+.+++..+.++
T Consensus       134 ------~~~--~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~  181 (353)
T 3vgz_A          134 ------RTE--E--VRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ  181 (353)
T ss_dssp             ------CCS--S--CCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred             ------ccc--c--cCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence                  000  0  0112243 34457876 66665   2458899999998775554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.53  E-value=0.019  Score=56.44  Aligned_cols=143  Identities=12%  Similarity=0.063  Sum_probs=81.2

Q ss_pred             EEEecCCcEEEEeC---ceEEEEeCCCCeEEEEccCCCC--CCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCC
Q 042680          198 VYLLPDGNVYVFAN---NRSVVHDPKANKIIREFPQLPG--GARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVRE  272 (530)
Q Consensus       198 ~~llp~G~lfv~Gg---~~~e~yDp~tn~w~~~~p~mp~--~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~  272 (530)
                      +..++||++++...   ..+..+|+... ....++--.+  .....+. +.+. +           .++.++++...+  
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~~Gk-~l~~~~~~~~~~~~~~~~~-~v~~-~-----------~~G~~lv~~~~~--  145 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNMKGE-VLSKTEFETGIERPHAQFR-QINK-N-----------KKGNYLVPLFAT--  145 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECTTSC-EEEEEEECCSCSSGGGSCS-CCEE-C-----------TTSCEEEEETTT--
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeCCCC-EEEEEeccCCCCccccccc-CceE-C-----------CCCCEEEEecCC--
Confidence            34678999998753   36777898544 3323321011  0111111 2222 2           267888775422  


Q ss_pred             ccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680          273 GLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP  352 (530)
Q Consensus       273 ~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP  352 (530)
                                     ..+.+||+. ..-.|+...-.  + ..++..+++|+++|++...             ..+..+||
T Consensus       146 ---------------~~v~~~d~~-G~~~w~~~~~~--~-~~~~~~~~~g~~~v~~~~~-------------~~v~~~d~  193 (276)
T 3no2_A          146 ---------------SEVREIAPN-GQLLNSVKLSG--T-PFSSAFLDNGDCLVACGDA-------------HCFVQLNL  193 (276)
T ss_dssp             ---------------TEEEEECTT-SCEEEEEECSS--C-CCEEEECTTSCEEEECBTT-------------SEEEEECT
T ss_pred             ---------------CEEEEECCC-CCEEEEEECCC--C-ccceeEcCCCCEEEEeCCC-------------CeEEEEeC
Confidence                           246778886 45678875211  1 2345667999999987543             15789999


Q ss_pred             CCCCCCceEEecC-CCCCCc-ccccceecCCCeEEEcCC
Q 042680          353 NAPEGQRFAELAP-TDIPRM-YHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       353 ~t~~g~~Wt~la~-~~~~R~-yHS~a~LLpdGrVlv~GG  389 (530)
                      ++.. ..|+.-.. ..-.|+ +.+.+.+++||.+||+..
T Consensus       194 ~tG~-~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          194 ESNR-IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             TTCC-EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             cCCc-EEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            8651 14664321 122233 334566789999999973

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.52  E-value=0.058  Score=53.83  Aligned_cols=227  Identities=14%  Similarity=0.076  Sum_probs=117.9

Q ss_pred             eEEEEeCCCCcE-EEccccCCcccccceeccCCcEEEc-cCCeEEEeccCCCCcEEEE-cCCCCCCCceEEecccccccc
Q 042680          100 HSIFYDYNKNAV-KALKVQSDTWCSSGGLSADGRLVML-SDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQD  176 (530)
Q Consensus       100 ~~~~yDp~t~~w-~~l~~~~~~~~~~~~~l~dG~l~~L-~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d  176 (530)
                      ....+|+.+.+. ..+......+  +-         ++ +||++||....+ ..+.++ +.+.   +-....+.- .   
T Consensus        65 ~v~viD~~t~~~~~~i~~~~~p~--~i---------~~~~~g~lyv~~~~~-~~v~~iD~~t~---~~~~~i~~g-~---  125 (328)
T 3dsm_A           65 VIFAIDINTFKEVGRITGFTSPR--YI---------HFLSDEKAYVTQIWD-YRIFIINPKTY---EITGYIECP-D---  125 (328)
T ss_dssp             EEEEEETTTCCEEEEEECCSSEE--EE---------EEEETTEEEEEEBSC-SEEEEEETTTT---EEEEEEECT-T---
T ss_pred             EEEEEECcccEEEEEcCCCCCCc--EE---------EEeCCCeEEEEECCC-CeEEEEECCCC---eEEEEEEcC-C---
Confidence            467889988876 3343222221  11         23 688999887433 456667 6653   111111110 0   


Q ss_pred             ccCCCCCCCccccccCCccceEEEecCCcEEEEe---CceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCC
Q 042680          177 FLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFA---NNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPR  253 (530)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~G---g~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~  253 (530)
                             ...     ..-.|...++.+|+||+..   ++...++|+.+++..+.++. .    ..|. +..+    .   
T Consensus       126 -------~~~-----~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g----~~p~-~i~~----~---  180 (328)
T 3dsm_A          126 -------MDM-----ESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTI-G----IQPT-SLVM----D---  180 (328)
T ss_dssp             -------CCT-----TTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-S----SCBC-CCEE----C---
T ss_pred             -------ccc-----cCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-C----CCcc-ceEE----c---
Confidence                   000     0013544455799999985   46789999999998765542 1    1222 2221    1   


Q ss_pred             CCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCC-eEEEEcCCC
Q 042680          254 DTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNG-EVLIINGAD  331 (530)
Q Consensus       254 ~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG-~VlViGG~~  331 (530)
                           .++++|++.-......       .+......+.+||+..  .+.... .++....-..+.+-||| ++|++++  
T Consensus       181 -----~dG~l~v~~~~~~~~~-------~~~~~~~~v~~id~~t--~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--  244 (328)
T 3dsm_A          181 -----KYNKMWTITDGGYEGS-------PYGYEAPSLYRIDAET--FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--  244 (328)
T ss_dssp             -----TTSEEEEEBCCBCTTC-------SSCBCCCEEEEEETTT--TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--
T ss_pred             -----CCCCEEEEECCCccCC-------ccccCCceEEEEECCC--CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--
Confidence                 2688888753221100       0001135688899863  444333 44433323344455654 5666553  


Q ss_pred             CCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCC-CCcccccceecC-CCeEEEcCCCCCCCCccccCCCCcceEEE
Q 042680          332 LGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDI-PRMYHSVANLLP-DGKVFVGGSNDNDGYFEFAKFPTELRLEK  409 (530)
Q Consensus       332 ~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~-~R~yHS~a~LLp-dGrVlv~GG~~~~~~~~~~~~~t~~~vE~  409 (530)
                                    ++.+||+++.   +.....-... .+.-++.+ +-| +|+|||+....         |....+|.+
T Consensus       245 --------------~v~~~d~~t~---~~~~~~~~~~~~~~p~gi~-vdp~~g~lyva~~~~---------y~~~~~V~v  297 (328)
T 3dsm_A          245 --------------DIWRMPVEAD---RVPVRPFLEFRDTKYYGLT-VNPNNGEVYVADAID---------YQQQGIVYR  297 (328)
T ss_dssp             --------------SEEEEETTCS---SCCSSCSBCCCSSCEEEEE-ECTTTCCEEEEECTT---------SSSEEEEEE
T ss_pred             --------------EEEEEECCCC---ceeeeeeecCCCCceEEEE-EcCCCCeEEEEcccc---------cccCCEEEE
Confidence                          3568999887   5421111111 12233333 456 89999997321         111346888


Q ss_pred             EcCC
Q 042680          410 FTPP  413 (530)
Q Consensus       410 y~Pp  413 (530)
                      |+|.
T Consensus       298 ~d~~  301 (328)
T 3dsm_A          298 YSPQ  301 (328)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            9876

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.30  E-value=0.15  Score=50.52  Aligned_cols=137  Identities=11%  Similarity=0.104  Sum_probs=77.7

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...|+|+.++.|+  ....+||..+++....+..     ...+.... ..-           .+++++++|+.+      
T Consensus       171 ~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l-~~s-----------pd~~~l~s~s~d------  227 (321)
T 3ow8_A          171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG-----HAMPIRSL-TFS-----------PDSQLLVTASDD------  227 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCCCEE-EEC-----------TTSCEEEEECTT------
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-----cCCceeEE-EEc-----------CCCCEEEEEcCC------
Confidence            4457999999987  4688999999986644421     11121111 221           267888988864      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~  355 (530)
                                 ..+..+|...  .+.... .-.... -.+...-|||+.++.++.+.             ++.+||..+.
T Consensus       228 -----------g~i~iwd~~~--~~~~~~~~~h~~~-v~~~~~sp~~~~l~s~s~D~-------------~v~iwd~~~~  280 (321)
T 3ow8_A          228 -----------GYIKIYDVQH--ANLAGTLSGHASW-VLNVAFCPDDTHFVSSSSDK-------------SVKVWDVGTR  280 (321)
T ss_dssp             -----------SCEEEEETTT--CCEEEEECCCSSC-EEEEEECTTSSEEEEEETTS-------------CEEEEETTTT
T ss_pred             -----------CeEEEEECCC--cceeEEEcCCCCc-eEEEEECCCCCEEEEEeCCC-------------cEEEEeCCCC
Confidence                       1245677653  222211 111111 22334458999999988651             5789998776


Q ss_pred             CCCceE-EecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          356 EGQRFA-ELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       356 ~g~~Wt-~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                         +-. .+...   ...-......|||+.++.||..
T Consensus       281 ---~~~~~~~~h---~~~v~~v~~s~~g~~l~s~~~d  311 (321)
T 3ow8_A          281 ---TCVHTFFDH---QDQVWGVKYNGNGSKIVSVGDD  311 (321)
T ss_dssp             ---EEEEEECCC---SSCEEEEEECTTSSEEEEEETT
T ss_pred             ---EEEEEEcCC---CCcEEEEEECCCCCEEEEEeCC
Confidence               322 22111   1111123356899999998853

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.03  E-value=0.066  Score=52.82  Aligned_cols=107  Identities=10%  Similarity=-0.003  Sum_probs=51.7

Q ss_pred             eeEEEEeCCCCcEEEccccC--CcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccc
Q 042680           99 CHSIFYDYNKNAVKALKVQS--DTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQ  175 (530)
Q Consensus        99 a~~~~yDp~t~~w~~l~~~~--~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~  175 (530)
                      .....||..+++++.+....  .....+.+        .-+||+.+++.+....++.+| ...+   ........+... 
T Consensus        63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a--------~spdg~~l~~~~~~~~~v~v~~~~~~---g~~~~~~~~~~~-  130 (347)
T 3hfq_A           63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVA--------VDEARQLVYSANYHKGTAEVMKIAAD---GALTLTDTVQHS-  130 (347)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESCCCSEEE--------EETTTTEEEEEETTTTEEEEEEECTT---SCEEEEEEEECC-
T ss_pred             ceEEEEEecCCcEEEeeeeecCCCCCEEEE--------ECCCCCEEEEEeCCCCEEEEEEeCCC---CCeeecceeecC-
Confidence            34667888777777765431  11111112        245887655555444567777 4322   111111100000 


Q ss_pred             cccCCCCCCCccccccCCccce-EEEecCCcEEEEeC--ceEEEEeCC-CCeEE
Q 042680          176 DFLERPGNPKGRFRLENNLYPF-VYLLPDGNVYVFAN--NRSVVHDPK-ANKII  225 (530)
Q Consensus       176 d~~~~~~~~~~~~~~~~~~Yp~-~~llp~G~lfv~Gg--~~~e~yDp~-tn~w~  225 (530)
                       .    ..+..+.   ..-.++ +...|||++|+.+.  ....+||.. +++..
T Consensus       131 -~----~~p~~~~---~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~  176 (347)
T 3hfq_A          131 -G----HGPRPEQ---DGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLS  176 (347)
T ss_dssp             -C----CCSSTTC---SSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEE
T ss_pred             -C----CCCCccc---cCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEE
Confidence             0    0000000   111244 45568999887753  578899988 55543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.00  E-value=0.11  Score=51.73  Aligned_cols=218  Identities=10%  Similarity=0.005  Sum_probs=112.8

Q ss_pred             eeEEEEeCCCCcEEEccccC-CcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEecccccccc
Q 042680           99 CHSIFYDYNKNAVKALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQD  176 (530)
Q Consensus        99 a~~~~yDp~t~~w~~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d  176 (530)
                      +...+||++++++..--... +...-+..    +.-+.+.++++||+... ...+.++ +.+.   +.....+..     
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~----~~~i~~~~~~lyv~~~~-~~~v~viD~~t~---~~~~~i~~~-----   83 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLGDV----AQSMVIRDGIGWIVVNN-SHVIFAIDINTF---KEVGRITGF-----   83 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCBSC----EEEEEEETTEEEEEEGG-GTEEEEEETTTC---CEEEEEECC-----
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccCcc----ceEEEEECCEEEEEEcC-CCEEEEEECccc---EEEEEcCCC-----
Confidence            56789999999886532110 10000000    01113457889988753 3467888 7654   121122211     


Q ss_pred             ccCCCCCCCccccccCCccceEEEe-cCCcEEEEe--CceEEEEeCCCCeEEEEccCCCCC--CCccCCCceEeeccCCC
Q 042680          177 FLERPGNPKGRFRLENNLYPFVYLL-PDGNVYVFA--NNRSVVHDPKANKIIREFPQLPGG--ARSYPATGTSVLLPLYL  251 (530)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~Yp~~~ll-p~G~lfv~G--g~~~e~yDp~tn~w~~~~p~mp~~--~r~yp~~g~svmlpl~~  251 (530)
                                       -.|+..+. ++|+||+..  +....++|+.+++..+.++. ...  ....|. +.++      
T Consensus        84 -----------------~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~-g~~~~~~~~p~-~i~~------  138 (328)
T 3dsm_A           84 -----------------TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC-PDMDMESGSTE-QMVQ------  138 (328)
T ss_dssp             -----------------SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC-TTCCTTTCBCC-CEEE------
T ss_pred             -----------------CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc-CCccccCCCcc-eEEE------
Confidence                             12555556 899999987  56789999999987654432 210  011332 2222      


Q ss_pred             CCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCC
Q 042680          252 PRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGA  330 (530)
Q Consensus       252 ~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~  330 (530)
                             .++++||+.-.                ....+.+||+..  .+.... +.  ...-.+...-+||++|++.-.
T Consensus       139 -------~~~~lyv~~~~----------------~~~~v~viD~~t--~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~  191 (328)
T 3dsm_A          139 -------YGKYVYVNCWS----------------YQNRILKIDTET--DKVVDELTI--GIQPTSLVMDKYNKMWTITDG  191 (328)
T ss_dssp             -------ETTEEEEEECT----------------TCCEEEEEETTT--TEEEEEEEC--SSCBCCCEECTTSEEEEEBCC
T ss_pred             -------ECCEEEEEcCC----------------CCCEEEEEECCC--CeEEEEEEc--CCCccceEEcCCCCEEEEECC
Confidence                   26888887421                013467888864  433322 22  111234455589999998643


Q ss_pred             CCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCC-eEEEcC
Q 042680          331 DLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDG-KVFVGG  388 (530)
Q Consensus       331 ~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdG-rVlv~G  388 (530)
                      ......|.   .....+.++|+++.   +....-..+....-++. ++-||| ++|++.
T Consensus       192 ~~~~~~~~---~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~l-a~~~d~~~lyv~~  243 (328)
T 3dsm_A          192 GYEGSPYG---YEAPSLYRIDAETF---TVEKQFKFKLGDWPSEV-QLNGTRDTLYWIN  243 (328)
T ss_dssp             BCTTCSSC---BCCCEEEEEETTTT---EEEEEEECCTTCCCEEE-EECTTSCEEEEES
T ss_pred             CccCCccc---cCCceEEEEECCCC---eEEEEEecCCCCCceeE-EEecCCCEEEEEc
Confidence            21100000   00236789999988   65532222211212233 344554 566653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.88  E-value=0.32  Score=48.18  Aligned_cols=137  Identities=14%  Similarity=0.178  Sum_probs=73.5

Q ss_pred             ecCCcEEEEeC-ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccc
Q 042680          201 LPDGNVYVFAN-NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEE  279 (530)
Q Consensus       201 lp~G~lfv~Gg-~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~  279 (530)
                      .++++|+..++ ....+||..+++....+..   .  ..+.  .++.  ..        .+++++++|+.+         
T Consensus       152 ~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~---h--~~~v--~~~~--~~--------~~~~~l~sg~~d---------  205 (340)
T 1got_B          152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTG---H--TGDV--MSLS--LA--------PDTRLFVSGACD---------  205 (340)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEEEEEECC---C--SSCE--EEEE--EC--------TTSSEEEEEETT---------
T ss_pred             CCCCcEEEEECCCcEEEEECCCCcEEEEEcC---C--CCce--EEEE--EC--------CCCCEEEEEeCC---------
Confidence            45777555444 4688999999986644421   1  1111  1111  11        267888888765         


Q ss_pred             cccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCC
Q 042680          280 EKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQ  358 (530)
Q Consensus       280 ~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~  358 (530)
                              ..+..+|+..  .+-... .-..... .+...-|||+.+++|+.+ |            ++.+||..+.   
T Consensus       206 --------~~v~~wd~~~--~~~~~~~~~h~~~v-~~v~~~p~~~~l~s~s~d-~------------~v~iwd~~~~---  258 (340)
T 1got_B          206 --------ASAKLWDVRE--GMCRQTFTGHESDI-NAICFFPNGNAFATGSDD-A------------TCRLFDLRAD---  258 (340)
T ss_dssp             --------SCEEEEETTT--CSEEEEECCCSSCE-EEEEECTTSSEEEEEETT-S------------CEEEEETTTT---
T ss_pred             --------CcEEEEECCC--CeeEEEEcCCcCCE-EEEEEcCCCCEEEEEcCC-C------------cEEEEECCCC---
Confidence                    1345677653  211111 1112222 233445899999999865 1            5789998876   


Q ss_pred             ceE-EecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          359 RFA-ELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       359 ~Wt-~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      +-. ....... ...-.....-|||+.+++|+..
T Consensus       259 ~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          259 QELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             EEEEEECCTTC-CSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEccCCc-ccceEEEEECCCCCEEEEECCC
Confidence            422 1111110 0011123456899999999853

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.67  E-value=0.48  Score=47.35  Aligned_cols=141  Identities=13%  Similarity=0.150  Sum_probs=77.0

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...++++.++.|+  ..+.+||..+++..+.+..   .  ..+  -.++  .+.+      ..+++.+++|+.+      
T Consensus       161 ~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~---h--~~~--v~~~--~~~~------~~~g~~l~sgs~D------  219 (354)
T 2pbi_B          161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHG---H--GAD--VLCL--DLAP------SETGNTFVSGGCD------  219 (354)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC---C--SSC--EEEE--EECC------CSSCCEEEEEETT------
T ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC---C--CCC--eEEE--EEEe------CCCCCEEEEEeCC------
Confidence            3446787777665  4688999999876644421   1  110  0111  1111      0256888888865      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~  355 (530)
                                 ..+..+|+..  .+.... .-..... .+...-|+|+.+++|+.+ |            ++.+||..+.
T Consensus       220 -----------g~v~~wd~~~--~~~~~~~~~h~~~v-~~v~~~p~~~~l~s~s~D-~------------~v~lwd~~~~  272 (354)
T 2pbi_B          220 -----------KKAMVWDMRS--GQCVQAFETHESDV-NSVRYYPSGDAFASGSDD-A------------TCRLYDLRAD  272 (354)
T ss_dssp             -----------SCEEEEETTT--CCEEEEECCCSSCE-EEEEECTTSSEEEEEETT-S------------CEEEEETTTT
T ss_pred             -----------CeEEEEECCC--CcEEEEecCCCCCe-EEEEEeCCCCEEEEEeCC-C------------eEEEEECCCC
Confidence                       1355677653  322222 2222222 233445899999999865 1            5789998876


Q ss_pred             CCCceE-EecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          356 EGQRFA-ELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       356 ~g~~Wt-~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                         +-. ...... .....+....-|||+++++|+..
T Consensus       273 ---~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d  305 (354)
T 2pbi_B          273 ---REVAIYSKES-IIFGASSVDFSLSGRLLFAGYND  305 (354)
T ss_dssp             ---EEEEEECCTT-CCSCEEEEEECTTSSEEEEEETT
T ss_pred             ---cEEEEEcCCC-cccceeEEEEeCCCCEEEEEECC
Confidence               422 221111 11112234456899999999853

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.58  E-value=0.5  Score=44.36  Aligned_cols=150  Identities=19%  Similarity=0.181  Sum_probs=77.8

Q ss_pred             ceEE-EecCCcEEEEe--CceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCC
Q 042680          196 PFVY-LLPDGNVYVFA--NNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVRE  272 (530)
Q Consensus       196 p~~~-llp~G~lfv~G--g~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~  272 (530)
                      |+.. ..++|+||+..  +....+||..+.... .... .  ....|. +.++ -           .++++|++....  
T Consensus       110 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~-~--~~~~p~-~i~~-~-----------~~g~l~v~~~~~--  170 (270)
T 1rwi_B          110 PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPF-T--GLNDPD-GVAV-D-----------NSGNVYVTDTDN--  170 (270)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-ECCC-C--SCCSCC-CEEE-C-----------TTCCEEEEEGGG--
T ss_pred             CcceEECCCCCEEEEECCCCEEEEEECCCceeE-eecc-c--cCCCce-eEEE-e-----------CCCCEEEEECCC--
Confidence            4443 44699999975  346788887776543 2211 1  111221 2222 1           257888875322  


Q ss_pred             ccccccccccccccCCcEEEEEcCCCCCccee-c-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEe
Q 042680          273 GLYLGEEEKRFVNALDDCARMVVTSPNPEWKI-E-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLY  350 (530)
Q Consensus       273 ~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~-~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiY  350 (530)
                                     ..+.+||+.. ...... . .+..+   .+.++-++|++||.....             ..+.+|
T Consensus       171 ---------------~~i~~~~~~~-~~~~~~~~~~~~~p---~~i~~d~~g~l~v~~~~~-------------~~v~~~  218 (270)
T 1rwi_B          171 ---------------NRVVKLEAES-NNQVVLPFTDITAP---WGIAVDEAGTVYVTEHNT-------------NQVVKL  218 (270)
T ss_dssp             ---------------TEEEEECTTT-CCEEECCCSSCCSE---EEEEECTTCCEEEEETTT-------------SCEEEE
T ss_pred             ---------------CEEEEEecCC-CceEeecccCCCCc---eEEEECCCCCEEEEECCC-------------CcEEEE
Confidence                           2356677653 111111 1 22222   233444789999977532             147789


Q ss_pred             cCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCC
Q 042680          351 RPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPY  414 (530)
Q Consensus       351 DP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppy  414 (530)
                      |+...   .-........ ..-++ .++-+||++||+....             .+|.+|+.+.
T Consensus       219 ~~~~~---~~~~~~~~~~-~~p~~-i~~~~~g~l~v~~~~~-------------~~v~~~~~~~  264 (270)
T 1rwi_B          219 LAGST---TSTVLPFTGL-NTPLA-VAVDSDRTVYVADRGN-------------DRVVKLTSLE  264 (270)
T ss_dssp             CTTCS---CCEECCCCSC-SCEEE-EEECTTCCEEEEEGGG-------------TEEEEECCCG
T ss_pred             cCCCC---cceeeccCCC-CCcee-EEECCCCCEEEEECCC-------------CEEEEEcCCC
Confidence            99765   3332211111 11223 3345899999986532             3577776654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.56  E-value=0.6  Score=45.01  Aligned_cols=180  Identities=17%  Similarity=0.164  Sum_probs=94.5

Q ss_pred             ccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc--
Q 042680          136 LSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--  212 (530)
Q Consensus       136 L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--  212 (530)
                      .+||+.++.|+.++ .+.+| ..++   +....+   ..         +..       .. -.+...++|++++.|+.  
T Consensus        74 ~~~~~~l~s~~~d~-~i~vwd~~~~---~~~~~~---~~---------~~~-------~v-~~~~~~~~~~~l~s~~~d~  129 (312)
T 4ery_A           74 SSDSNLLVSASDDK-TLKIWDVSSG---KCLKTL---KG---------HSN-------YV-FCCNFNPQSNLIVSGSFDE  129 (312)
T ss_dssp             CTTSSEEEEEETTS-EEEEEETTTC---CEEEEE---EC---------CSS-------CE-EEEEECSSSSEEEEEETTS
T ss_pred             cCCCCEEEEECCCC-EEEEEECCCC---cEEEEE---cC---------CCC-------CE-EEEEEcCCCCEEEEEeCCC
Confidence            45889999988764 67777 4432   111111   00         000       00 01234578999988874  


Q ss_pred             eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEE
Q 042680          213 RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCAR  292 (530)
Q Consensus       213 ~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~  292 (530)
                      ...+||..+++..+.+..-     ..+.  .++.+  .        .+++.+++|+.+                 ..+..
T Consensus       130 ~i~iwd~~~~~~~~~~~~~-----~~~v--~~~~~--~--------~~~~~l~~~~~d-----------------~~i~~  175 (312)
T 4ery_A          130 SVRIWDVKTGKCLKTLPAH-----SDPV--SAVHF--N--------RDGSLIVSSSYD-----------------GLCRI  175 (312)
T ss_dssp             CEEEEETTTCCEEEEECCC-----SSCE--EEEEE--C--------TTSSEEEEEETT-----------------SCEEE
T ss_pred             cEEEEECCCCEEEEEecCC-----CCcE--EEEEE--c--------CCCCEEEEEeCC-----------------CcEEE
Confidence            6789999988765444321     1111  11211  1        267788888754                 12556


Q ss_pred             EEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE-EecCCCCCC
Q 042680          293 MVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA-ELAPTDIPR  370 (530)
Q Consensus       293 ~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt-~la~~~~~R  370 (530)
                      +|...  .+.... .............-|||+.+++++.+ |            .+.+||..+.   +-. .+.......
T Consensus       176 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~------------~i~iwd~~~~---~~~~~~~~~~~~~  237 (312)
T 4ery_A          176 WDTAS--GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-N------------TLKLWDYSKG---KCLKTYTGHKNEK  237 (312)
T ss_dssp             EETTT--CCEEEEECCSSCCCEEEEEECTTSSEEEEEETT-T------------EEEEEETTTT---EEEEEECSSCCSS
T ss_pred             EECCC--CceeeEEeccCCCceEEEEECCCCCEEEEEcCC-C------------eEEEEECCCC---cEEEEEEecCCce
Confidence            77653  222111 11111112223445899999988764 1            5788998776   432 222221111


Q ss_pred             cccccceecCCCeEEEcCCCC
Q 042680          371 MYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       371 ~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      .........++++.+++|+..
T Consensus       238 ~~~~~~~~~~~~~~l~sg~~d  258 (312)
T 4ery_A          238 YCIFANFSVTGGKWIVSGSED  258 (312)
T ss_dssp             SCCCEEEECSSSCEEEECCTT
T ss_pred             EEEEEEEEeCCCcEEEEECCC
Confidence            111122234689999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.45  E-value=0.28  Score=47.73  Aligned_cols=179  Identities=15%  Similarity=0.203  Sum_probs=92.3

Q ss_pred             ccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc--
Q 042680          136 LSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--  212 (530)
Q Consensus       136 L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--  212 (530)
                      .+||+.++.|+.+ .++.+| ..++   +....+.   .         |...        --.+...|+|++++.|+.  
T Consensus        64 ~~~~~~l~s~s~d-~~i~vwd~~~~---~~~~~~~---~---------h~~~--------v~~~~~~~~~~~l~sgs~D~  119 (304)
T 2ynn_A           64 IARKNWIIVGSDD-FRIRVFNYNTG---EKVVDFE---A---------HPDY--------IRSIAVHPTKPYVLSGSDDL  119 (304)
T ss_dssp             EGGGTEEEEEETT-SEEEEEETTTC---CEEEEEE---C---------CSSC--------EEEEEECSSSSEEEEEETTS
T ss_pred             eCCCCEEEEECCC-CEEEEEECCCC---cEEEEEe---C---------CCCc--------EEEEEEcCCCCEEEEECCCC
Confidence            4588888888876 467778 5543   1111111   0         0000        012334579999988874  


Q ss_pred             eEEEEeCCCCe-EEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEE
Q 042680          213 RSVVHDPKANK-IIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCA  291 (530)
Q Consensus       213 ~~e~yDp~tn~-w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~  291 (530)
                      .+.+||..++. -.+.+   .+.  ..+.. .....|          .++.++++|+.+                 .++.
T Consensus       120 ~v~lWd~~~~~~~~~~~---~~h--~~~v~-~v~~~p----------~~~~~l~sgs~D-----------------~~v~  166 (304)
T 2ynn_A          120 TVKLWNWENNWALEQTF---EGH--EHFVM-CVAFNP----------KDPSTFASGCLD-----------------RTVK  166 (304)
T ss_dssp             CEEEEEGGGTTEEEEEE---CCC--CSCEE-EEEECT----------TCTTEEEEEETT-----------------SEEE
T ss_pred             eEEEEECCCCcchhhhh---ccc--CCcEE-EEEECC----------CCCCEEEEEeCC-----------------CeEE
Confidence            68899998763 22122   111  11101 111211          256788888765                 1355


Q ss_pred             EEEcCCCCCcceecCCCCcccccee--eeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce-EEecCCCC
Q 042680          292 RMVVTSPNPEWKIEKMPAPRTMADG--VLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF-AELAPTDI  368 (530)
Q Consensus       292 ~~dp~~~~~~W~~~~M~~~R~~~~~--vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W-t~la~~~~  368 (530)
                      .+|........... ....+.....  ...+|++.++.|+.+.             ++.+||..+.   +- ..+...  
T Consensus       167 iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~-------------~i~iWd~~~~---~~~~~~~~h--  227 (304)
T 2ynn_A          167 VWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDL-------------TIKIWDYQTK---SCVATLEGH--  227 (304)
T ss_dssp             EEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEETTS-------------EEEEEETTTT---EEEEEEECC--
T ss_pred             EEECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcCCC-------------eEEEEeCCCC---ccceeeCCC--
Confidence            67765322222221 1111111111  1235888999888651             6789998876   32 222111  


Q ss_pred             CCcccccceecCCCeEEEcCCCC
Q 042680          369 PRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       369 ~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                       ...-..+..-|++++++.|+..
T Consensus       228 -~~~v~~~~~~p~~~~l~s~s~D  249 (304)
T 2ynn_A          228 -MSNVSFAVFHPTLPIIISGSED  249 (304)
T ss_dssp             -SSCEEEEEECSSSSEEEEEETT
T ss_pred             -CCCEEEEEECCCCCEEEEEcCC
Confidence             1111234467899999999854

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.32  E-value=0.052  Score=54.16  Aligned_cols=142  Identities=17%  Similarity=0.131  Sum_probs=78.8

Q ss_pred             EecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          200 LLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       200 llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      ..|+|+.++.|+.  .+.+||..++.+. .+..+.+.  ..+.  .++.+  .        .+++.++.|+.+       
T Consensus        69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~~-~~~~~~~h--~~~v--~~v~~--s--------p~~~~l~s~s~D-------  126 (345)
T 3fm0_A           69 WSPCGNYLASASFDATTCIWKKNQDDFE-CVTTLEGH--ENEV--KSVAW--A--------PSGNLLATCSRD-------  126 (345)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEECCC-EE-EEEEECCC--SSCE--EEEEE--C--------TTSSEEEEEETT-------
T ss_pred             ECCCCCEEEEEECCCcEEEEEccCCCeE-EEEEccCC--CCCc--eEEEE--e--------CCCCEEEEEECC-------
Confidence            4579999998874  6788998887653 22222221  1111  11111  1        267888888765       


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceec-CC--CCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIE-KM--PAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M--~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                .++..+|+.. ...+... .+  .... -.....-|+|++++.|+.+.             ++.+||..+
T Consensus       127 ----------~~v~iwd~~~-~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~s~d~-------------~i~~w~~~~  181 (345)
T 3fm0_A          127 ----------KSVWVWEVDE-EDEYECVSVLNSHTQD-VKHVVWHPSQELLASASYDD-------------TVKLYREEE  181 (345)
T ss_dssp             ----------SCEEEEEECT-TSCEEEEEEECCCCSC-EEEEEECSSSSCEEEEETTS-------------CEEEEEEET
T ss_pred             ----------CeEEEEECCC-CCCeEEEEEecCcCCC-eEEEEECCCCCEEEEEeCCC-------------cEEEEEecC
Confidence                      1345666653 2223221 11  1111 22334458999999988651             578999988


Q ss_pred             CCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      .   +|.....+.--...-.....-|||+.++.|+.+
T Consensus       182 ~---~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          182 D---DWVCCATLEGHESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             T---EEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             C---CEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence            8   776443332111111123356899999999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=96.26  E-value=0.51  Score=45.69  Aligned_cols=95  Identities=16%  Similarity=0.109  Sum_probs=51.4

Q ss_pred             eEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCe-EEEeccCCCCcEEEE-cCCCCCCCc-eEEecccccccc
Q 042680          100 HSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGS-FLVYGGRDAFSYEYV-PVEKESNKA-AIAFPFLFETQD  176 (530)
Q Consensus       100 ~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~-v~VvGG~~~~s~E~y-P~~~~~~~~-~~~~p~l~~t~d  176 (530)
                      ...+||+.+++....-....... +.+        .-+||+ +|+.+ .....+..| +.++   +. .....   ..  
T Consensus        21 ~v~~~d~~~~~~~~~~~~~~~~~-~~~--------~s~dg~~l~~~~-~~~~~i~~~d~~~~---~~~~~~~~---~~--   82 (331)
T 3u4y_A           21 RISFFSTDTLEILNQITLGYDFV-DTA--------ITSDCSNVVVTS-DFCQTLVQIETQLE---PPKVVAIQ---EG--   82 (331)
T ss_dssp             EEEEEETTTCCEEEEEECCCCEE-EEE--------ECSSSCEEEEEE-STTCEEEEEECSSS---SCEEEEEE---EC--
T ss_pred             eEEEEeCcccceeeeEEccCCcc-eEE--------EcCCCCEEEEEe-CCCCeEEEEECCCC---ceeEEecc---cC--
Confidence            46789999888765543322111 222        245777 45444 333467777 6543   11 11111   00  


Q ss_pred             ccCCCCCCCccccccCCccc-e-EEEecCCcEEEEeC-c----eEEEEeCCCCeEEEEcc
Q 042680          177 FLERPGNPKGRFRLENNLYP-F-VYLLPDGNVYVFAN-N----RSVVHDPKANKIIREFP  229 (530)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~Yp-~-~~llp~G~lfv~Gg-~----~~e~yDp~tn~w~~~~p  229 (530)
                                       ..| + +...+||+.++.+. .    ...+||..+++..+.++
T Consensus        83 -----------------~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~  125 (331)
T 3u4y_A           83 -----------------QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP  125 (331)
T ss_dssp             -----------------SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE
T ss_pred             -----------------CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE
Confidence                             011 2 35568888544533 3    68999999998775443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.15  E-value=1.1  Score=43.54  Aligned_cols=139  Identities=16%  Similarity=0.169  Sum_probs=72.4

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...+||+.+++++  ....+||..+++..+.++.-..++..++  ...++-|          ....+|+....       
T Consensus       191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~s~----------dg~~l~~~~~~-------  251 (353)
T 3vgz_A          191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF--INISLDT----------ARQRAFITDSK-------  251 (353)
T ss_dssp             EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE--EEEEEET----------TTTEEEEEESS-------
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc--ceEEECC----------CCCEEEEEeCC-------
Confidence            4567887555543  4678899999987644432111112221  1112221          13456665422       


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCe-EEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGE-VLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~-VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                ...+.+||+..  .+.... +...+  . +...-|||+ +|+.+...             ..+.+||..+
T Consensus       252 ----------~~~v~~~d~~~--~~~~~~~~~~~~--~-~~~~s~dg~~l~v~~~~~-------------~~v~~~d~~~  303 (353)
T 3vgz_A          252 ----------AAEVLVVDTRN--GNILAKVAAPES--L-AVLFNPARNEAYVTHRQA-------------GKVSVIDAKS  303 (353)
T ss_dssp             ----------SSEEEEEETTT--CCEEEEEECSSC--C-CEEEETTTTEEEEEETTT-------------TEEEEEETTT
T ss_pred             ----------CCEEEEEECCC--CcEEEEEEcCCC--c-eEEECCCCCEEEEEECCC-------------CeEEEEECCC
Confidence                      12466788753  333222 34433  2 344568997 77766432             1578999987


Q ss_pred             CCCCceEEecCCCCCCcccccceecCCCe-EEEcCCC
Q 042680          355 PEGQRFAELAPTDIPRMYHSVANLLPDGK-VFVGGSN  390 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGr-Vlv~GG~  390 (530)
                      .   +....-  .....-++ ..+-|||+ +||+...
T Consensus       304 ~---~~~~~~--~~~~~~~~-~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          304 Y---KVVKTF--DTPTHPNS-LALSADGKTLYVSVKQ  334 (353)
T ss_dssp             T---EEEEEE--ECCSEEEE-EEECTTSCEEEEEEEC
T ss_pred             C---eEEEEE--ecCCCCCe-EEEcCCCCEEEEEEcc
Confidence            7   544221  22222233 34558998 7777654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.14  E-value=0.79  Score=43.84  Aligned_cols=203  Identities=12%  Similarity=0.087  Sum_probs=105.8

Q ss_pred             eEEEEeCCCCcEEEccccC--CcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEecccccccc
Q 042680          100 HSIFYDYNKNAVKALKVQS--DTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQD  176 (530)
Q Consensus       100 ~~~~yDp~t~~w~~l~~~~--~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d  176 (530)
                      ...+||..+++......+.  ...+....        ..++|+.+++|+.++ .+.+| ..+.   +....+..  .   
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~dg-~v~~~d~~~~---~~~~~~~~--~---  182 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAPACYALA--------ISPDSKVCFSCCSDG-NIAVWDLHNQ---TLVRQFQG--H---  182 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEE--------ECTTSSEEEEEETTS-CEEEEETTTT---EEEEEECC--C---
T ss_pred             cEEEEECCCCCcceeeecccCCCceEEEE--------ECCCCCEEEEEeCCC-cEEEEeCCCC---ceeeeeec--c---
Confidence            4668888877754443332  11111122        345888888888764 56777 4432   11111110  0   


Q ss_pred             ccCCCCCCCccccccCCccceEEEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCC
Q 042680          177 FLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRD  254 (530)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~  254 (530)
                             .. .       --.+...++|+.++.|+  ....+||..+++....+. .+.     +.. .....       
T Consensus       183 -------~~-~-------i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~-----~v~-~~~~s-------  233 (337)
T 1gxr_A          183 -------TD-G-------ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS-----QIF-SLGYC-------  233 (337)
T ss_dssp             -------SS-C-------EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS-----CEE-EEEEC-------
T ss_pred             -------cC-c-------eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCC-----ceE-EEEEC-------
Confidence                   00 0       01234457998888876  367899999987664332 111     101 11111       


Q ss_pred             CCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCC
Q 042680          255 TYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGS  334 (530)
Q Consensus       255 ~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~  334 (530)
                          .+++.+++|+.+                 ..+..||.... ...+. .-. .....+....|||+.+++++.+ | 
T Consensus       234 ----~~~~~l~~~~~~-----------------~~i~~~~~~~~-~~~~~-~~~-~~~v~~~~~~~~~~~l~~~~~d-g-  287 (337)
T 1gxr_A          234 ----PTGEWLAVGMES-----------------SNVEVLHVNKP-DKYQL-HLH-ESCVLSLKFAYCGKWFVSTGKD-N-  287 (337)
T ss_dssp             ----TTSSEEEEEETT-----------------SCEEEEETTSS-CEEEE-CCC-SSCEEEEEECTTSSEEEEEETT-S-
T ss_pred             ----CCCCEEEEEcCC-----------------CcEEEEECCCC-CeEEE-cCC-ccceeEEEECCCCCEEEEecCC-C-
Confidence                267778887653                 13566776531 11111 111 1123344556899999988864 1 


Q ss_pred             CCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          335 GGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       335 ~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                                 .+.+||..+.   +-.....  ....-. ...+.|||+.+++|+..
T Consensus       288 -----------~i~~~~~~~~---~~~~~~~--~~~~v~-~~~~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          288 -----------LLNAWRTPYG---ASIFQSK--ESSSVL-SCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             -----------EEEEEETTTC---CEEEEEE--CSSCEE-EEEECTTSCEEEEEETT
T ss_pred             -----------cEEEEECCCC---eEEEEec--CCCcEE-EEEECCCCCEEEEecCC
Confidence                       5789998876   4332111  111111 23456899999988853

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.06  E-value=0.6  Score=43.79  Aligned_cols=135  Identities=20%  Similarity=0.256  Sum_probs=71.6

Q ss_pred             EEecCCcEEEEe-CceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          199 YLLPDGNVYVFA-NNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       199 ~llp~G~lfv~G-g~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      ...++|+||+.. +....+||+.++... .++. .  ....|. +.++    .        .++++|++...+       
T Consensus        73 ~~~~~g~l~v~~~~~~i~~~d~~~~~~~-~~~~-~--~~~~p~-~i~~----~--------~~g~l~v~~~~~-------  128 (270)
T 1rwi_B           73 AVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLPF-D--GLNYPE-GLAV----D--------TQGAVYVADRGN-------  128 (270)
T ss_dssp             EECTTCCEEEEETTTEEEEECTTCSCCE-ECCC-C--SCSSEE-EEEE----C--------TTCCEEEEEGGG-------
T ss_pred             EECCCCCEEEEcCCCEEEEEeCCCceEe-eeec-C--CcCCCc-ceEE----C--------CCCCEEEEECCC-------
Confidence            345689999987 457888999887654 3321 1  112221 2221    1        267888875422       


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceec---CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIE---KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~---~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                ..+.+|+...  ......   .+..+   .+.++-++|++|+.....             ..+.+||+..
T Consensus       129 ----------~~i~~~~~~~--~~~~~~~~~~~~~p---~~i~~~~~g~l~v~~~~~-------------~~i~~~~~~~  180 (270)
T 1rwi_B          129 ----------NRVVKLAAGS--KTQTVLPFTGLNDP---DGVAVDNSGNVYVTDTDN-------------NRVVKLEAES  180 (270)
T ss_dssp             ----------TEEEEECTTC--CSCEECCCCSCCSC---CCEEECTTCCEEEEEGGG-------------TEEEEECTTT
T ss_pred             ----------CEEEEEECCC--ceeEeeccccCCCc---eeEEEeCCCCEEEEECCC-------------CEEEEEecCC
Confidence                      1245565432  222211   22222   233445789999976432             1577899887


Q ss_pred             CCCCceEEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680          355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      .   .......... ..-++ .++-+||++||+...
T Consensus       181 ~---~~~~~~~~~~-~~p~~-i~~d~~g~l~v~~~~  211 (270)
T 1rwi_B          181 N---NQVVLPFTDI-TAPWG-IAVDEAGTVYVTEHN  211 (270)
T ss_dssp             C---CEEECCCSSC-CSEEE-EEECTTCCEEEEETT
T ss_pred             C---ceEeecccCC-CCceE-EEECCCCCEEEEECC
Confidence            6   4333211111 11122 344578999998753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=95.96  E-value=0.86  Score=45.62  Aligned_cols=221  Identities=10%  Similarity=0.034  Sum_probs=106.3

Q ss_pred             eEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEecccccccccc
Q 042680          100 HSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFL  178 (530)
Q Consensus       100 ~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~  178 (530)
                      ...+||..+++-...-........+.+        ..+||+.++.|+.++ ++.+| ..+.   +....+.   .     
T Consensus       120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~l~s~s~d~-~i~iwd~~~~---~~~~~~~---~-----  179 (420)
T 3vl1_A          120 DIKVLDSNFNLQREIDQAHVSEITKLK--------FFPSGEALISSSQDM-QLKIWSVKDG---SNPRTLI---G-----  179 (420)
T ss_dssp             CEEEECTTSCEEEEETTSSSSCEEEEE--------ECTTSSEEEEEETTS-EEEEEETTTC---CCCEEEE---C-----
T ss_pred             CEEEEeCCCcceeeecccccCccEEEE--------ECCCCCEEEEEeCCC-eEEEEeCCCC---cCceEEc---C-----
Confidence            356788776654433211111111122        345888888888764 67777 4432   1111110   0     


Q ss_pred             CCCCCCCccccccCCccceEEEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccC-------
Q 042680          179 ERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPL-------  249 (530)
Q Consensus       179 ~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl-------  249 (530)
                          +..       .. -.+...++|+.++.|+.  ...+||..+++-.+.+..... . ..+.. ...+.|-       
T Consensus       180 ----h~~-------~v-~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~-~~~v~-~~~~~~~~~~~~~~  244 (420)
T 3vl1_A          180 ----HRA-------TV-TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN-P-HDGVN-SIALFVGTDRQLHE  244 (420)
T ss_dssp             ----CSS-------CE-EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTB-T-TCCEE-EEEEEECCCSSCGG
T ss_pred             ----CCC-------cE-EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCC-C-CCCcc-EEEEecCCcceeee
Confidence                000       00 02334579998888764  588999999876644432110 0 00000 0000000       


Q ss_pred             ---CCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCe-EE
Q 042680          250 ---YLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGE-VL  325 (530)
Q Consensus       250 ---~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~-Vl  325 (530)
                         .+........+++.+++|+.+                 ..+..+|+......... .......-.+...-|+|+ ++
T Consensus       245 ~~~~~v~~~~~s~~~~~l~~~~~d-----------------g~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l  306 (420)
T 3vl1_A          245 ISTSKKNNLEFGTYGKYVIAGHVS-----------------GVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGNNANYI  306 (420)
T ss_dssp             GCCCCCCTTCSSCTTEEEEEEETT-----------------SCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSSCTTEE
T ss_pred             cccCcccceEEcCCCCEEEEEcCC-----------------CeEEEEECCCCceeEEc-ccccCCCceeEEEeCCCCCEE
Confidence               000000001267888887754                 13567777531111111 122222233445568998 88


Q ss_pred             EEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680          326 IINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       326 ViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      ++|+.+ |            .+.+||..+..- ....+....   ...-.++..+||+.+++|+.
T Consensus       307 ~~g~~d-g------------~i~vwd~~~~~~-~~~~~~~~~---~~~v~~~~~~~~~~l~s~~~  354 (420)
T 3vl1_A          307 YAGYEN-G------------MLAQWDLRSPEC-PVGEFLINE---GTPINNVYFAAGALFVSSGF  354 (420)
T ss_dssp             EEEETT-S------------EEEEEETTCTTS-CSEEEEEST---TSCEEEEEEETTEEEEEETT
T ss_pred             EEEeCC-C------------eEEEEEcCCCcC-chhhhhccC---CCCceEEEeCCCCEEEEecC
Confidence            888765 1            578999887611 012221100   11112335579999999884

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.93  E-value=0.53  Score=46.18  Aligned_cols=50  Identities=6%  Similarity=-0.140  Sum_probs=28.4

Q ss_pred             eeEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccC-CCCcEEEE
Q 042680           99 CHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGR-DAFSYEYV  155 (530)
Q Consensus        99 a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~-~~~s~E~y  155 (530)
                      -..+.+|+.+++++.+.............       .-+||++|+++.. ....+..|
T Consensus        18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a-------~spdg~l~~~~~~~~~~~v~~~   68 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLLAATQNPTYLA-------LSAKDCLYSVDKEDDEGGIAAW   68 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSCCCCEE-------ECTTCEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEcCCCCeEEEeeeeeccCCcceEE-------EccCCeEEEEEecCCCceEEEE
Confidence            55778899999888765432211111111       2458887776642 12356666

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=95.88  E-value=0.16  Score=49.64  Aligned_cols=136  Identities=15%  Similarity=0.207  Sum_probs=75.3

Q ss_pred             CCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccc
Q 042680          203 DGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEE  280 (530)
Q Consensus       203 ~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~  280 (530)
                      .|++++.+.  ....++|+++++....++. +..  ..  ...+.++|           +|+||+++.            
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-~~~--~~--~~~~~~~p-----------dG~ilvs~~------------   55 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-EKG--WE--CNSVAATK-----------AGEILFSYS------------   55 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC-CTT--CC--CCEEEECT-----------TSCEEEECB------------
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-Ccc--CC--CcCeEECC-----------CCCEEEeCC------------
Confidence            467777754  4678899989876545542 110  01  12333433           789998431            


Q ss_pred             ccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce
Q 042680          281 KRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF  360 (530)
Q Consensus       281 ~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W  360 (530)
                             ..+..||+ +..-.|+... +.....+++..++||+++|......            ..+..+||+-.  ..|
T Consensus        56 -------~~V~~~d~-~G~~~W~~~~-~~~~~~~~~~~~~dG~~lv~~~~~~------------~~v~~vd~~Gk--~l~  112 (276)
T 3no2_A           56 -------KGAKMITR-DGRELWNIAA-PAGCEMQTARILPDGNALVAWCGHP------------STILEVNMKGE--VLS  112 (276)
T ss_dssp             -------SEEEEECT-TSCEEEEEEC-CTTCEEEEEEECTTSCEEEEEESTT------------EEEEEECTTSC--EEE
T ss_pred             -------CCEEEECC-CCCEEEEEcC-CCCccccccEECCCCCEEEEecCCC------------CEEEEEeCCCC--EEE
Confidence                   12567887 3355687652 1111244567789999999865310            14667888433  134


Q ss_pred             EE-ecC-CCCCC-cccccceecCCCeEEEcCCC
Q 042680          361 AE-LAP-TDIPR-MYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       361 t~-la~-~~~~R-~yHS~a~LLpdGrVlv~GG~  390 (530)
                      +. +.. ...+. ..+. +..++||.++++...
T Consensus       113 ~~~~~~~~~~~~~~~~~-v~~~~~G~~lv~~~~  144 (276)
T 3no2_A          113 KTEFETGIERPHAQFRQ-INKNKKGNYLVPLFA  144 (276)
T ss_dssp             EEEECCSCSSGGGSCSC-CEECTTSCEEEEETT
T ss_pred             EEeccCCCCcccccccC-ceECCCCCEEEEecC
Confidence            42 211 11111 1223 345689999998763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=95.79  E-value=1.3  Score=41.69  Aligned_cols=135  Identities=15%  Similarity=0.063  Sum_probs=70.2

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ..-++|+||+...  ....+||+ +++.. .+. ++.. ...|   .++.+  .        .++++|++....      
T Consensus       147 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~-~~~~-~~~~---~~i~~--~--------~~g~l~v~~~~~------  203 (299)
T 2z2n_A          147 TLGSDNALWFTENQNNAIGRITE-SGDIT-EFK-IPTP-ASGP---VGITK--G--------NDDALWFVEIIG------  203 (299)
T ss_dssp             EECTTSCEEEEETTTTEEEEECT-TCCEE-EEE-CSST-TCCE---EEEEE--C--------TTSSEEEEETTT------
T ss_pred             EEcCCCCEEEEeCCCCEEEEEcC-CCcEE-Eee-CCCC-CCcc---eeEEE--C--------CCCCEEEEccCC------
Confidence            3446899999763  57889999 77665 331 2211 1122   12211  1        257888874321      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceecCCCCccccc-eeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMA-DGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~-~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~  355 (530)
                                 ..+.+||+ +  .++....++...... +...-++|+|||.....             ..+.+||| +.
T Consensus       204 -----------~~i~~~~~-~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------------~~i~~~d~-~g  255 (299)
T 2z2n_A          204 -----------NKIGRITT-S--GEITEFKIPTPNARPHAITAGAGIDLWFTEWGA-------------NKIGRLTS-NN  255 (299)
T ss_dssp             -----------TEEEEECT-T--CCEEEEECSSTTCCEEEEEECSTTCEEEEETTT-------------TEEEEEET-TT
T ss_pred             -----------ceEEEECC-C--CcEEEEECCCCCCCceeEEECCCCCEEEeccCC-------------ceEEEECC-CC
Confidence                       23556776 2  333322222111122 33444789999876322             14678999 44


Q ss_pred             CCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          356 EGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       356 ~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                         ++...........-++.++  ++|++|++..
T Consensus       256 ---~~~~~~~~~~~~~~~~i~~--~~g~l~v~~~  284 (299)
T 2z2n_A          256 ---IIEEYPIQIKSAEPHGICF--DGETIWFAME  284 (299)
T ss_dssp             ---EEEEEECSSSSCCEEEEEE--CSSCEEEEET
T ss_pred             ---ceEEEeCCCCCCccceEEe--cCCCEEEEec
Confidence               5554421111112233333  8999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.78  E-value=1.8  Score=43.32  Aligned_cols=143  Identities=13%  Similarity=0.160  Sum_probs=73.9

Q ss_pred             CCcEEEEeC--ceEEEEeCCCCeEEEEccC-CCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccc
Q 042680          203 DGNVYVFAN--NRSVVHDPKANKIIREFPQ-LPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEE  279 (530)
Q Consensus       203 ~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~-mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~  279 (530)
                      ++..++.|+  ..+.+||..+++....+.. .+.+.     .....-+...+       .++.++++|+.+         
T Consensus       169 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~-------~~~~~l~sgs~D---------  227 (380)
T 3iz6_a          169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH-----TADVLSLSINS-------LNANMFISGSCD---------  227 (380)
T ss_dssp             SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC-----CSCEEEEEECS-------SSCCEEEEEETT---------
T ss_pred             CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC-----ccCeEEEEeec-------CCCCEEEEEECC---------
Confidence            345566665  4688999999876533321 11110     11111111111       367888888865         


Q ss_pred             cccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCc
Q 042680          280 EKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQR  359 (530)
Q Consensus       280 ~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~  359 (530)
                              .++..+|+......-....-..... .+....|||+.++.|+.+ |            ++.+||..+.   +
T Consensus       228 --------~~v~~wd~~~~~~~~~~~~~h~~~v-~~v~~~p~~~~l~s~s~D-~------------~i~lwd~~~~---~  282 (380)
T 3iz6_a          228 --------TTVRLWDLRITSRAVRTYHGHEGDI-NSVKFFPDGQRFGTGSDD-G------------TCRLFDMRTG---H  282 (380)
T ss_dssp             --------SCEEEEETTTTCCCCEEECCCSSCC-CEEEECTTSSEEEEECSS-S------------CEEEEETTTT---E
T ss_pred             --------CeEEEEECCCCCcceEEECCcCCCe-EEEEEecCCCeEEEEcCC-C------------eEEEEECCCC---c
Confidence                    1355677653111111111122222 233456999999999875 1            5789998876   3


Q ss_pred             eE-EecCCCCCC----cccccceecCCCeEEEcCCCC
Q 042680          360 FA-ELAPTDIPR----MYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       360 Wt-~la~~~~~R----~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      -. .+.......    ..-.....-|||+.+++|+..
T Consensus       283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  319 (380)
T 3iz6_a          283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN  319 (380)
T ss_dssp             EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT
T ss_pred             EEEEecccccccccccCceEEEEECCCCCEEEEEECC
Confidence            22 221111100    011233456899999999853

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=95.77  E-value=0.61  Score=46.95  Aligned_cols=147  Identities=12%  Similarity=0.133  Sum_probs=77.4

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...++|++++.|+  ....+||+.+++....+.....+.+.    ...+..           .+++++++|.....    
T Consensus       183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~-----------~~~~~l~~g~~~~~----  243 (402)
T 2aq5_A          183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP----VHAVFV-----------SEGKILTTGFSRMS----  243 (402)
T ss_dssp             EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSC----CEEEEC-----------STTEEEEEEECTTC----
T ss_pred             EECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcc----eEEEEc-----------CCCcEEEEeccCCC----
Confidence            3457999888886  46889999999876544111111111    122222           26888888732100    


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPE  356 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~  356 (530)
                                ...+..+|.......-....+...........-|||+.+++.|...|            .+.+||..+. 
T Consensus       244 ----------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg------------~i~i~d~~~~-  300 (402)
T 2aq5_A          244 ----------ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS------------SIRYFEITSE-  300 (402)
T ss_dssp             ----------CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS------------CEEEEEECSS-
T ss_pred             ----------CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC------------eEEEEEecCC-
Confidence                      12356677753111111112333222334445589987765442211            5788998876 


Q ss_pred             CCc--eEEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680          357 GQR--FAELAPTDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       357 g~~--Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                        +  ...+...... .........|||++++.++.
T Consensus       301 --~~~~~~l~~~~~~-~~v~~~~~sp~~~~~~s~~~  333 (402)
T 2aq5_A          301 --APFLHYLSMFSSK-ESQRGMGYMPKRGLEVNKCE  333 (402)
T ss_dssp             --TTCEEEEEEECCS-SCCSEEEECCGGGSCGGGTE
T ss_pred             --CcceEeecccccC-CcccceEEecccccceecce
Confidence              4  3333332211 11223455689998887654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.75  E-value=1.3  Score=44.68  Aligned_cols=148  Identities=14%  Similarity=0.107  Sum_probs=70.4

Q ss_pred             EEecCCcEEEEeC----------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecC
Q 042680          199 YLLPDGNVYVFAN----------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGG  268 (530)
Q Consensus       199 ~llp~G~lfv~Gg----------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG  268 (530)
                      ...++|+.+++++          ....+||+.+++....+. .+    ..+  ...+.-|          ....+|++++
T Consensus       260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~----~~~--~~~~~~~----------~g~~l~~~~~  322 (433)
T 3bws_A          260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PP----GNK--RHIVSGN----------TENKIYVSDM  322 (433)
T ss_dssp             EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EE----ECE--EEEEECS----------STTEEEEEET
T ss_pred             EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CC----CCc--ceEEECC----------CCCEEEEEec
Confidence            3457887666655          256799999987663331 11    111  1112211          1336777765


Q ss_pred             ccCCccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCC--CcccCCCCCcc
Q 042680          269 SVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSG--GWHCADKPSLK  346 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~--g~~~~~~p~~~  346 (530)
                      .+                 ..+.+||+..  .+-.. .++....-.+...-|||+.+++++...+..  .+-.....-..
T Consensus       323 ~~-----------------~~v~v~d~~~--~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~  382 (433)
T 3bws_A          323 CC-----------------SKIEVYDLKE--KKVQK-SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK  382 (433)
T ss_dssp             TT-----------------TEEEEEETTT--TEEEE-EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred             CC-----------------CEEEEEECCC--CcEEE-EecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE
Confidence            43                 2356677653  22111 122222223445568998666665431100  00000000125


Q ss_pred             cEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          347 PMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       347 ~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      +.+||..+.   +....-..  ...-. ...+-|||+.+++++
T Consensus       383 v~~~d~~~~---~~~~~~~~--~~~~~-~~~~s~dg~~l~~~~  419 (433)
T 3bws_A          383 VYVIDTTTD---TVKEFWEA--GNQPT-GLDVSPDNRYLVISD  419 (433)
T ss_dssp             EEEEETTTT---EEEEEEEC--SSSEE-EEEECTTSCEEEEEE
T ss_pred             EEEEECCCC---cEEEEecC--CCCCc-eEEEcCCCCEEEEEE
Confidence            789999877   54322111  11112 234568998877665

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=95.69  E-value=1.8  Score=43.59  Aligned_cols=143  Identities=11%  Similarity=0.115  Sum_probs=76.7

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...++|++++.|+  ..+.+||..+.+-...+..-     ..+.. .....|          ....++++||...+    
T Consensus       224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~~v~-~~~~~p----------~~~~ll~~~~gs~d----  283 (401)
T 4aez_A          224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-----NAAVK-AVAWCP----------WQSNLLATGGGTMD----  283 (401)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC-----SSCCC-EEEECT----------TSTTEEEEECCTTT----
T ss_pred             EEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC-----cceEE-EEEECC----------CCCCEEEEecCCCC----
Confidence            3456999999987  46889999987655344221     11111 122222          24567777752111    


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEE--cCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLII--NGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlVi--GG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                 ..+..+|...  .+-.. .+.....-.+...-|+|+.+++  |..+ |            .+.+||..+
T Consensus       284 -----------~~i~i~d~~~--~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~g~~d-g------------~i~v~~~~~  336 (401)
T 4aez_A          284 -----------KQIHFWNAAT--GARVN-TVDAGSQVTSLIWSPHSKEIMSTHGFPD-N------------NLSIWSYSS  336 (401)
T ss_dssp             -----------CEEEEEETTT--CCEEE-EEECSSCEEEEEECSSSSEEEEEECTTT-C------------EEEEEEEET
T ss_pred             -----------CEEEEEECCC--CCEEE-EEeCCCcEEEEEECCCCCeEEEEeecCC-C------------cEEEEecCC
Confidence                       2356677653  22111 1111222333445589988887  3332 1            578999887


Q ss_pred             CCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      .   +......+......-....+-|||+.+++|+..
T Consensus       337 ~---~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d  370 (401)
T 4aez_A          337 S---GLTKQVDIPAHDTRVLYSALSPDGRILSTAASD  370 (401)
T ss_dssp             T---EEEEEEEEECCSSCCCEEEECTTSSEEEEECTT
T ss_pred             c---cceeEEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence            6   555433222111111223456899999998853

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=95.55  E-value=0.37  Score=47.22  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=60.5

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...++|++++.|+.  ...+||..++++...+. +...  ..+.  .++.  ..        .+++.+++|+.+      
T Consensus        59 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~--~~~v--~~~~--~~--------~~~~~l~~~~~d------  117 (372)
T 1k8k_C           59 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV-ILRI--NRAA--RCVR--WA--------PNEKKFAVGSGS------  117 (372)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEETTEEEEEEE-CCCC--SSCE--EEEE--EC--------TTSSEEEEEETT------
T ss_pred             EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEE-eecC--CCce--eEEE--EC--------CCCCEEEEEeCC------
Confidence            44579999988874  68899999998763322 1111  1111  1111  11        257778887754      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCccee-c--CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKI-E--KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~-~--~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                                 ..+..+|... ...|.. .  .......-.+....|||+.+++|+.+ |            .+.+||..
T Consensus       118 -----------~~v~i~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g------------~i~~~d~~  172 (372)
T 1k8k_C          118 -----------RVISICYFEQ-ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-F------------KCRIFSAY  172 (372)
T ss_dssp             -----------SSEEEEEEET-TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT-S------------CEEEEECC
T ss_pred             -----------CEEEEEEecC-CCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC-C------------CEEEEEcc
Confidence                       1245566654 223332 2  12222223344556899999998864 1            46788854

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.47  E-value=2.2  Score=42.12  Aligned_cols=203  Identities=15%  Similarity=0.124  Sum_probs=100.3

Q ss_pred             eEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEecccccccccc
Q 042680          100 HSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFL  178 (530)
Q Consensus       100 ~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~  178 (530)
                      ...+||..+++....-.... ...+.+        .-+||+.++++|.....+.+| ..++   +......   .     
T Consensus        55 ~i~v~d~~~~~~~~~~~~~~-~v~~~~--------~spdg~~l~~~~~~~~~v~v~d~~~~---~~~~~~~---~-----  114 (391)
T 1l0q_A           55 DVSIIDTATNNVIATVPAGS-SPQGVA--------VSPDGKQVYVTNMASSTLSVIDTTSN---TVAGTVK---T-----  114 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSS-SEEEEE--------ECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE---C-----
T ss_pred             eEEEEECCCCeEEEEEECCC-CccceE--------ECCCCCEEEEEECCCCEEEEEECCCC---eEEEEEe---C-----
Confidence            36678888776544322222 111122        245787665566555678888 5543   1111111   0     


Q ss_pred             CCCCCCCccccccCCccce-EEEecCCc-EEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCC
Q 042680          179 ERPGNPKGRFRLENNLYPF-VYLLPDGN-VYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRD  254 (530)
Q Consensus       179 ~~~~~~~~~~~~~~~~Yp~-~~llp~G~-lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~  254 (530)
                                    .-.+. +...++|+ ||+.+.  ....+||..+++....+.. .    ..+  ....+.|      
T Consensus       115 --------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~----~~~--~~~~~~~------  167 (391)
T 1l0q_A          115 --------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-G----RSP--KGIAVTP------  167 (391)
T ss_dssp             --------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-C----SSE--EEEEECT------
T ss_pred             --------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-C----CCc--ceEEECC------
Confidence                          00122 34457887 556665  4789999999987744432 1    111  1112221      


Q ss_pred             CCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCC
Q 042680          255 TYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGS  334 (530)
Q Consensus       255 ~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~  334 (530)
                          ....|+++++.+                 ..+..+|+..  .+.... ......-.....-|||+.+++++...+ 
T Consensus       168 ----dg~~l~~~~~~~-----------------~~v~~~d~~~--~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~-  222 (391)
T 1l0q_A          168 ----DGTKVYVANFDS-----------------MSISVIDTVT--NSVIDT-VKVEAAPSGIAVNPEGTKAYVTNVDKY-  222 (391)
T ss_dssp             ----TSSEEEEEETTT-----------------TEEEEEETTT--TEEEEE-EECSSEEEEEEECTTSSEEEEEEECSS-
T ss_pred             ----CCCEEEEEeCCC-----------------CEEEEEECCC--CeEEEE-EecCCCccceEECCCCCEEEEEecCcC-
Confidence                134566665532                 2356677753  222221 111111223345589987776653100 


Q ss_pred             CCcccCCCCCcccEEecCCCCCCCceE-EecCCCCCCcccccceecCCCe-EEEcCCC
Q 042680          335 GGWHCADKPSLKPMLYRPNAPEGQRFA-ELAPTDIPRMYHSVANLLPDGK-VFVGGSN  390 (530)
Q Consensus       335 ~g~~~~~~p~~~~eiYDP~t~~g~~Wt-~la~~~~~R~yHS~a~LLpdGr-Vlv~GG~  390 (530)
                               ...+.+||..+.   +-. .+...   .. .....+-|||+ +|++++.
T Consensus       223 ---------~~~v~~~d~~~~---~~~~~~~~~---~~-~~~~~~s~dg~~l~~s~~~  264 (391)
T 1l0q_A          223 ---------FNTVSMIDTGTN---KITARIPVG---PD-PAGIAVTPDGKKVYVALSF  264 (391)
T ss_dssp             ---------CCEEEEEETTTT---EEEEEEECC---SS-EEEEEECTTSSEEEEEETT
T ss_pred             ---------CCcEEEEECCCC---eEEEEEecC---CC-ccEEEEccCCCEEEEEcCC
Confidence                     126789999876   432 22221   11 12234568996 5567653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=95.42  E-value=0.77  Score=44.75  Aligned_cols=101  Identities=14%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             CcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCC-ccccceeeeecC---CeEEEEcCCCCCC
Q 042680          260 DAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPA-PRTMADGVLLPN---GEVLIINGADLGS  334 (530)
Q Consensus       260 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~-~R~~~~~vvLpd---G~VlViGG~~~g~  334 (530)
                      +++.+++|+.+                 ..+..||.......|... .+.. ...-.+...-||   |+++++++.+ | 
T Consensus       171 ~~~~l~~~~~d-----------------g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-g-  231 (379)
T 3jrp_A          171 ESRKFVTGGAD-----------------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD-R-  231 (379)
T ss_dssp             TTCEEEEEETT-----------------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT-S-
T ss_pred             CCCEEEEEeCC-----------------CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC-C-
Confidence            47788887754                 135667776434445443 3322 112223445588   8999999865 1 


Q ss_pred             CCcccCCCCCcccEEecCCCCCCCceE-EecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          335 GGWHCADKPSLKPMLYRPNAPEGQRFA-ELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       335 ~g~~~~~~p~~~~eiYDP~t~~g~~Wt-~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                                 .+.+||..+... .+. .+.........-.....-|||+.+++|+..
T Consensus       232 -----------~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  277 (379)
T 3jrp_A          232 -----------TCIIWTQDNEQG-PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  277 (379)
T ss_dssp             -----------CEEEEEESSTTS-CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred             -----------EEEEEeCCCCCc-cceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence                       578899877621 111 111111111111223456899999988763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.40  E-value=1.8  Score=40.71  Aligned_cols=139  Identities=17%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             ceEEE-ecCCcEEEEe--CceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCC
Q 042680          196 PFVYL-LPDGNVYVFA--NNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVRE  272 (530)
Q Consensus       196 p~~~l-lp~G~lfv~G--g~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~  272 (530)
                      |+... -++|+||+..  +....+||+ +++.. .+. ++.. ...|   ..+.+  .        .+++||++....  
T Consensus       148 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~-~~~~-~~~~---~~i~~--d--------~~g~l~v~~~~~--  208 (300)
T 2qc5_A          148 PAFITLGSDNALWFTENQNNSIGRITN-TGKLE-EYP-LPTN-AAAP---VGITS--G--------NDGALWFVEIMG--  208 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEE-CSST-TCCE---EEEEE--C--------TTSSEEEEETTT--
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-Eee-CCCC-CCCc---ceEEE--C--------CCCCEEEEccCC--
Confidence            54444 4789999886  457889999 66665 332 2211 1222   12211  1        267888864221  


Q ss_pred             ccccccccccccccCCcEEEEEcCCCCCcceecCCCCccc-cceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEec
Q 042680          273 GLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRT-MADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYR  351 (530)
Q Consensus       273 ~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~-~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYD  351 (530)
                                     ..+.+||+.   .++....++..-. -.+..+-++|+|||.....             ..+.+||
T Consensus       209 ---------------~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-------------~~i~~~~  257 (300)
T 2qc5_A          209 ---------------NKIGRITTT---GEISEYDIPTPNARPHAITAGKNSEIWFTEWGA-------------NQIGRIT  257 (300)
T ss_dssp             ---------------TEEEEECTT---CCEEEEECSSTTCCEEEEEECSTTCEEEEETTT-------------TEEEEEC
T ss_pred             ---------------CEEEEEcCC---CcEEEEECCCCCCCceEEEECCCCCEEEeccCC-------------CeEEEEC
Confidence                           135567762   3333322221111 1233444789999976322             1467899


Q ss_pred             CCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          352 PNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       352 P~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      | +.   ++....-......-++. ++.+||++|++..
T Consensus       258 ~-~g---~~~~~~~~~~~~~~~~i-~~~~~g~l~v~~~  290 (300)
T 2qc5_A          258 N-DN---TIQEYQLQTENAEPHGI-TFGKDGSVWFALK  290 (300)
T ss_dssp             T-TS---CEEEEECCSTTCCCCCE-EECTTSCEEEECS
T ss_pred             C-CC---cEEEEECCccCCcccee-EeCCCCCEEEEcc
Confidence            8 44   55543211111112333 3457999999865

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.38  E-value=1.9  Score=40.83  Aligned_cols=138  Identities=17%  Similarity=0.246  Sum_probs=72.9

Q ss_pred             ceE-EEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCC
Q 042680          196 PFV-YLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVRE  272 (530)
Q Consensus       196 p~~-~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~  272 (530)
                      |.. ...++|+||+...  ....+||+...... .+.. +. ....|   .++.+  .        .+++||++...+  
T Consensus       123 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~-~~-~~~~p---~~i~~--~--------~~g~l~v~~~~~--  184 (286)
T 1q7f_A          123 PRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH-KFGC-SK-HLEFP---NGVVV--N--------DKQEIFISDNRA--  184 (286)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTSCEEE-EEEC-TT-TCSSE---EEEEE--C--------SSSEEEEEEGGG--
T ss_pred             ceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE-EeCC-CC-ccCCc---EEEEE--C--------CCCCEEEEECCC--
Confidence            444 3447999999853  57889998765543 3421 11 11222   12211  1        268899875432  


Q ss_pred             ccccccccccccccCCcEEEEEcCCCCCcceec-C----CCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCccc
Q 042680          273 GLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-K----MPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKP  347 (530)
Q Consensus       273 ~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~----M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~  347 (530)
                                     ..+.+||+.   .+.... .    +..++   +.++-+||++||......            ..+
T Consensus       185 ---------------~~i~~~~~~---g~~~~~~~~~g~~~~p~---~i~~d~~G~l~v~~~~~~------------~~i  231 (286)
T 1q7f_A          185 ---------------HCVKVFNYE---GQYLRQIGGEGITNYPI---GVGINSNGEILIADNHNN------------FNL  231 (286)
T ss_dssp             ---------------TEEEEEETT---CCEEEEESCTTTSCSEE---EEEECTTCCEEEEECSSS------------CEE
T ss_pred             ---------------CEEEEEcCC---CCEEEEEccCCccCCCc---EEEECCCCCEEEEeCCCC------------EEE
Confidence                           235677764   222111 1    22222   333448999999875431            157


Q ss_pred             EEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcC
Q 042680          348 MLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGG  388 (530)
Q Consensus       348 eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~G  388 (530)
                      .+||+...   ....+..-.....-++. .+-+||++||+.
T Consensus       232 ~~~~~~g~---~~~~~~~~~~~~~~~~i-~~~~~g~l~vs~  268 (286)
T 1q7f_A          232 TIFTQDGQ---LISALESKVKHAQCFDV-ALMDDGSVVLAS  268 (286)
T ss_dssp             EEECTTSC---EEEEEEESSCCSCEEEE-EEETTTEEEEEE
T ss_pred             EEECCCCC---EEEEEcccCCCCcceeE-EECCCCcEEEEC
Confidence            89998654   43333221111112233 345899999984

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.16  E-value=0.7  Score=43.95  Aligned_cols=145  Identities=8%  Similarity=0.131  Sum_probs=74.8

Q ss_pred             cceEEE-ecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCC--CCCccCCCceEeec-cCCCCCCCCCCCCcEEEEecC
Q 042680          195 YPFVYL-LPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPG--GARSYPATGTSVLL-PLYLPRDTYKPVDAEVLICGG  268 (530)
Q Consensus       195 Yp~~~l-lp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~--~~r~yp~~g~svml-pl~~~~~~~~~~~gkI~v~GG  268 (530)
                      +|...+ -++|+||+...  ....+||+...... .++....  .....|   ..+.+ +          .++++|+++.
T Consensus        31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~-~~~~~~~~~~~~~~p---~~i~~~~----------~~g~l~v~~~   96 (286)
T 1q7f_A           31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF-QFGECGKRDSQLLYP---NRVAVVR----------NSGDIIVTER   96 (286)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEE-EECCBSSSTTCBSSE---EEEEEET----------TTTEEEEEEC
T ss_pred             CCceEEECCCCCEEEEECCCCEEEEECCCCcEEE-EecccCCCcccccCc---eEEEEEc----------CCCeEEEEcC
Confidence            355444 46899999853  56889999855433 4432110  011122   12211 1          2689999864


Q ss_pred             ccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCccc
Q 042680          269 SVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKP  347 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~  347 (530)
                      ..                ...+.+||+.   .+.... .......-.+.++-++|++||.....             ..+
T Consensus        97 ~~----------------~~~i~~~d~~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------------~~i  144 (286)
T 1q7f_A           97 SP----------------THQIQIYNQY---GQFVRKFGATILQHPRGVTVDNKGRIIVVECKV-------------MRV  144 (286)
T ss_dssp             GG----------------GCEEEEECTT---SCEEEEECTTTCSCEEEEEECTTSCEEEEETTT-------------TEE
T ss_pred             CC----------------CCEEEEECCC---CcEEEEecCccCCCceEEEEeCCCCEEEEECCC-------------CEE
Confidence            21                0134566643   222211 11111112244556899999986532             157


Q ss_pred             EEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          348 MLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       348 eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      .+||+...   ....+........-++ .++-+||++||+..
T Consensus       145 ~~~~~~g~---~~~~~~~~~~~~~p~~-i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          145 IIFDQNGN---VLHKFGCSKHLEFPNG-VVVNDKQEIFISDN  182 (286)
T ss_dssp             EEECTTSC---EEEEEECTTTCSSEEE-EEECSSSEEEEEEG
T ss_pred             EEEcCCCC---EEEEeCCCCccCCcEE-EEECCCCCEEEEEC
Confidence            78998655   5444432111111122 34567999999865

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.07  E-value=1.2  Score=42.62  Aligned_cols=139  Identities=15%  Similarity=0.095  Sum_probs=74.5

Q ss_pred             EEEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          198 VYLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       198 ~~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      +...++|+.+++|+  ....+||..+++.. ....+...  ..+.. .....           .+++.+++|+.+     
T Consensus       103 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~--~~~i~-~~~~~-----------~~~~~l~~~~~d-----  162 (337)
T 1gxr_A          103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSS--APACY-ALAIS-----------PDSKVCFSCCSD-----  162 (337)
T ss_dssp             EEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECS--SSCEE-EEEEC-----------TTSSEEEEEETT-----
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccC--CCceE-EEEEC-----------CCCCEEEEEeCC-----
Confidence            34557999888876  46889999988743 11111111  11101 11111           257777787754     


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                  ..+..+|+..  .+.... ...... -.+....|||+.+++++.+ |            .+.+||..+
T Consensus       163 ------------g~v~~~d~~~--~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d-g------------~i~~~d~~~  214 (337)
T 1gxr_A          163 ------------GNIAVWDLHN--QTLVRQFQGHTDG-ASCIDISNDGTKLWTGGLD-N------------TVRSWDLRE  214 (337)
T ss_dssp             ------------SCEEEEETTT--TEEEEEECCCSSC-EEEEEECTTSSEEEEEETT-S------------EEEEEETTT
T ss_pred             ------------CcEEEEeCCC--CceeeeeecccCc-eEEEEECCCCCEEEEEecC-C------------cEEEEECCC
Confidence                        1255677653  222222 222222 2334456899999988754 1            578999987


Q ss_pred             CCCCceEEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680          355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      .   +-...-.  ....-.+ ..+-|||+.+++|+.
T Consensus       215 ~---~~~~~~~--~~~~v~~-~~~s~~~~~l~~~~~  244 (337)
T 1gxr_A          215 G---RQLQQHD--FTSQIFS-LGYCPTGEWLAVGME  244 (337)
T ss_dssp             T---EEEEEEE--CSSCEEE-EEECTTSSEEEEEET
T ss_pred             C---ceEeeec--CCCceEE-EEECCCCCEEEEEcC
Confidence            6   4322111  1111122 334589999999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=95.06  E-value=1.2  Score=45.34  Aligned_cols=30  Identities=17%  Similarity=0.382  Sum_probs=22.6

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREF  228 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~  228 (530)
                      ...|+|+.++.|+  ....+||..+++..+.+
T Consensus       199 ~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~  230 (410)
T 1vyh_C          199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  230 (410)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            4457999888887  46889999998765444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.01  E-value=2.2  Score=45.70  Aligned_cols=212  Identities=11%  Similarity=0.092  Sum_probs=104.6

Q ss_pred             eEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-c--CCCCCCCceEEecccccccc
Q 042680          100 HSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-P--VEKESNKAAIAFPFLFETQD  176 (530)
Q Consensus       100 ~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P--~~~~~~~~~~~~p~l~~t~d  176 (530)
                      ...++|..+++....-..... .++.+        .-+||+.+.+++.+ .++..| .  .+.   +....++       
T Consensus       160 ~V~v~D~~t~~~~~~i~~g~~-~~~v~--------~spdg~~l~v~~~d-~~V~v~D~~~~t~---~~~~~i~-------  219 (543)
T 1nir_A          160 QIALVDGDSKKIVKVIDTGYA-VHISR--------MSASGRYLLVIGRD-ARIDMIDLWAKEP---TKVAEIK-------  219 (543)
T ss_dssp             EEEEEETTTCCEEEEEECSTT-EEEEE--------ECTTSCEEEEEETT-SEEEEEETTSSSC---EEEEEEE-------
T ss_pred             eEEEEECCCceEEEEEecCcc-cceEE--------ECCCCCEEEEECCC-CeEEEEECcCCCC---cEEEEEe-------
Confidence            366788888765432111111 12222        35688877777766 678888 6  332   1111111       


Q ss_pred             ccCCCCCCCccccccCCccce-EEEec----CCcEEEEeC---ceEEEEeCCCCeEEEEccCCC--CCCCcc-C--CCce
Q 042680          177 FLERPGNPKGRFRLENNLYPF-VYLLP----DGNVYVFAN---NRSVVHDPKANKIIREFPQLP--GGARSY-P--ATGT  243 (530)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~Yp~-~~llp----~G~lfv~Gg---~~~e~yDp~tn~w~~~~p~mp--~~~r~y-p--~~g~  243 (530)
                                     ....|+ +...|    ||+.+++++   ..+.+||..+.+..+.++...  .....| |  +..+
T Consensus       220 ---------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~  284 (543)
T 1nir_A          220 ---------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  284 (543)
T ss_dssp             ---------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             ---------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence                           011243 34557    898776665   578899999988775554211  000011 1  1111


Q ss_pred             EeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCe
Q 042680          244 SVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGE  323 (530)
Q Consensus       244 svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~  323 (530)
                      .+.   .+       ...++|++...+                 ..+..+|..+..... ...++..+.-++...-|||+
T Consensus       285 i~~---s~-------~~~~~~vs~~~~-----------------g~i~vvd~~~~~~l~-~~~i~~~~~~~~~~~spdg~  336 (543)
T 1nir_A          285 IIA---SH-------EHPEFIVNVKET-----------------GKVLLVNYKDIDNLT-VTSIGAAPFLHDGGWDSSHR  336 (543)
T ss_dssp             EEE---CS-------SSSEEEEEETTT-----------------TEEEEEECTTSSSCE-EEEEECCSSCCCEEECTTSC
T ss_pred             EEE---CC-------CCCEEEEEECCC-----------------CeEEEEEecCCCcce-eEEeccCcCccCceECCCCC
Confidence            221   11       245666654321                 235566665321111 11222344445556669999


Q ss_pred             EEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEE-ecCCCCCCcccccceecCC-CeEEEcCC
Q 042680          324 VLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAE-LAPTDIPRMYHSVANLLPD-GKVFVGGS  389 (530)
Q Consensus       324 VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~-la~~~~~R~yHS~a~LLpd-GrVlv~GG  389 (530)
                      .+++....            ..++.++|.++.   +-.. +..-..|+...+....-|| |++|+++.
T Consensus       337 ~l~va~~~------------~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~  389 (543)
T 1nir_A          337 YFMTAANN------------SNKVAVIDSKDR---RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH  389 (543)
T ss_dssp             EEEEEEGG------------GTEEEEEETTTT---EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEB
T ss_pred             EEEEEecC------------CCeEEEEECCCC---eEEEeeccCCCCCCCCCcccCCCCCccEEEecc
Confidence            55444322            115778999987   5442 2222222222233334466 88998874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.99  E-value=2.3  Score=46.72  Aligned_cols=140  Identities=13%  Similarity=0.128  Sum_probs=75.7

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCC-eEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKAN-KIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn-~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      ...++|+.++.|+.  ...+||..++ ...+.+..-     ..+.. .....|          .+++.+++|+.+     
T Consensus       104 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~v~-~~~~~p----------~~~~~l~~~~~d-----  162 (814)
T 3mkq_A          104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-----EHFVM-CVAFNP----------KDPSTFASGCLD-----  162 (814)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC-----SSCEE-EEEEET----------TEEEEEEEEETT-----
T ss_pred             EEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC-----CCcEE-EEEEEc----------CCCCEEEEEeCC-----
Confidence            34578988887763  6889999887 443222211     11111 111111          157788887754     


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeec--CCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLP--NGEVLIINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLp--dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                                  ..+..+|+......+.... ...+........|  ||+.+++|+.+ |            .+.+||..
T Consensus       163 ------------g~v~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d-g------------~i~~~d~~  216 (814)
T 3mkq_A          163 ------------RTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDKPYMITASDD-L------------TIKIWDYQ  216 (814)
T ss_dssp             ------------SEEEEEETTCSSCSEEEEC-CCTTCCCEEEECCSTTCCEEEEECTT-S------------EEEEEETT
T ss_pred             ------------CeEEEEECCCCcceeEEec-CCCCCEEEEEEEECCCCCEEEEEeCC-C------------EEEEEECC
Confidence                        1356677754333333321 1112222333345  99999999865 1            57899987


Q ss_pred             CCCCCceE-EecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          354 APEGQRFA-ELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       354 t~~g~~Wt-~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      +.   +-. .+...   ...-.....-|||+++++|+..
T Consensus       217 ~~---~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d  249 (814)
T 3mkq_A          217 TK---SCVATLEGH---MSNVSFAVFHPTLPIIISGSED  249 (814)
T ss_dssp             TT---EEEEEEECC---SSCEEEEEECSSSSEEEEEETT
T ss_pred             CC---cEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCC
Confidence            76   422 22111   1112234456899999998854

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=94.98  E-value=2.7  Score=40.37  Aligned_cols=82  Identities=10%  Similarity=0.098  Sum_probs=41.2

Q ss_pred             cEEEEEcCCCCCcc---eecCCCCccccceeeeecCCe-EEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEec
Q 042680          289 DCARMVVTSPNPEW---KIEKMPAPRTMADGVLLPNGE-VLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELA  364 (530)
Q Consensus       289 s~~~~dp~~~~~~W---~~~~M~~~R~~~~~vvLpdG~-VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la  364 (530)
                      .+.+||+..  .+.   .. .++....-.++..-|||+ +|+.+...             ..+.+||+++.   +.+.+.
T Consensus       199 ~v~v~d~~~--~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~-------------~~i~~~d~~~~---~~~~~~  259 (331)
T 3u4y_A          199 SIGILETQN--PENITLLN-AVGTNNLPGTIVVSRDGSTVYVLTEST-------------VDVFNFNQLSG---TLSFVK  259 (331)
T ss_dssp             EEEEEECSS--TTSCEEEE-EEECSSCCCCEEECTTSSEEEEECSSE-------------EEEEEEETTTT---EEEEEE
T ss_pred             eEEEEECCC--Ccccceee-eccCCCCCceEEECCCCCEEEEEEcCC-------------CEEEEEECCCC---ceeeec
Confidence            356788753  332   11 222222233455669999 55654422             14778999887   664332


Q ss_pred             CCC-----CCCcccc--cceecCCCeEE-EcCC
Q 042680          365 PTD-----IPRMYHS--VANLLPDGKVF-VGGS  389 (530)
Q Consensus       365 ~~~-----~~R~yHS--~a~LLpdGrVl-v~GG  389 (530)
                      ...     .++..+.  ...+-|||+.+ +++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  292 (331)
T 3u4y_A          260 SFGHGLLIDPRPLFGANQMALNKTETKLFISAN  292 (331)
T ss_dssp             EEECCCCCCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred             ccccccccCCCCcccccceEECCCCCEEEEecC
Confidence            111     1222111  12556899855 5544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=94.97  E-value=1.8  Score=43.64  Aligned_cols=68  Identities=18%  Similarity=0.269  Sum_probs=40.2

Q ss_pred             ccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEec-CCcEEEEeC--
Q 042680          136 LSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLP-DGNVYVFAN--  211 (530)
Q Consensus       136 L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp-~G~lfv~Gg--  211 (530)
                      .+||+.++.|+.+ .++.+| ..++   +.......  .                  .. -..+...+ +|++++.|+  
T Consensus       174 ~p~~~~l~s~s~d-~~v~iwd~~~~---~~~~~~~~--~------------------~~-v~~~~~~~~~~~~l~~~s~d  228 (393)
T 1erj_A          174 FPSGDKLVSGSGD-RTVRIWDLRTG---QCSLTLSI--E------------------DG-VTTVAVSPGDGKYIAAGSLD  228 (393)
T ss_dssp             CTTSSEEEEEETT-SEEEEEETTTT---EEEEEEEC--S------------------SC-EEEEEECSTTCCEEEEEETT
T ss_pred             cCCCCEEEEecCC-CcEEEEECCCC---eeEEEEEc--C------------------CC-cEEEEEECCCCCEEEEEcCC
Confidence            4588888888876 467777 5432   11111110  0                  00 01223445 899999887  


Q ss_pred             ceEEEEeCCCCeEEEEc
Q 042680          212 NRSVVHDPKANKIIREF  228 (530)
Q Consensus       212 ~~~e~yDp~tn~w~~~~  228 (530)
                      ..+.+||..+++....+
T Consensus       229 ~~v~iwd~~~~~~~~~~  245 (393)
T 1erj_A          229 RAVRVWDSETGFLVERL  245 (393)
T ss_dssp             SCEEEEETTTCCEEEEE
T ss_pred             CcEEEEECCCCcEEEee
Confidence            46889999998765444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=94.94  E-value=2.5  Score=39.72  Aligned_cols=139  Identities=17%  Similarity=0.150  Sum_probs=70.3

Q ss_pred             ceE-EEecCCcEEEEe--CceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCC
Q 042680          196 PFV-YLLPDGNVYVFA--NNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVRE  272 (530)
Q Consensus       196 p~~-~llp~G~lfv~G--g~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~  272 (530)
                      |+. ...++|+||+..  +....+||+ +++.. .+. ++.. ...|   ..+.+  .        .++++|++.-..  
T Consensus       101 ~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~-~~~~-~~~~---~~i~~--~--------~~g~l~v~~~~~--  161 (299)
T 2z2n_A          101 PYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYE-LPNK-GSYP---SFITL--G--------SDNALWFTENQN--  161 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEE-CSST-TCCE---EEEEE--C--------TTSCEEEEETTT--
T ss_pred             ceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Eec-CCCC-CCCC---ceEEE--c--------CCCCEEEEeCCC--
Confidence            443 344689999986  457889999 66554 222 1211 1121   11111  1        267888864211  


Q ss_pred             ccccccccccccccCCcEEEEEcCCCCCcceecCCCCc-cccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEec
Q 042680          273 GLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAP-RTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYR  351 (530)
Q Consensus       273 ~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~-R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYD  351 (530)
                                     ..+.+||+ +  .+.....++.. ..-.+...-++|++|+.....             ..+.+||
T Consensus       162 ---------------~~i~~~~~-~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------------~~i~~~~  210 (299)
T 2z2n_A          162 ---------------NAIGRITE-S--GDITEFKIPTPASGPVGITKGNDDALWFVEIIG-------------NKIGRIT  210 (299)
T ss_dssp             ---------------TEEEEECT-T--CCEEEEECSSTTCCEEEEEECTTSSEEEEETTT-------------TEEEEEC
T ss_pred             ---------------CEEEEEcC-C--CcEEEeeCCCCCCcceeEEECCCCCEEEEccCC-------------ceEEEEC
Confidence                           23456666 2  33332112111 111233444789999876432             1467899


Q ss_pred             CCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          352 PNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       352 P~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      + +.   ++...........-++ ..+-+||++|++..
T Consensus       211 ~-~g---~~~~~~~~~~~~~~~~-i~~~~~g~l~v~~~  243 (299)
T 2z2n_A          211 T-SG---EITEFKIPTPNARPHA-ITAGAGIDLWFTEW  243 (299)
T ss_dssp             T-TC---CEEEEECSSTTCCEEE-EEECSTTCEEEEET
T ss_pred             C-CC---cEEEEECCCCCCCcee-EEECCCCCEEEecc
Confidence            9 66   6654321111111122 33457999999863

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=94.89  E-value=0.49  Score=52.83  Aligned_cols=102  Identities=14%  Similarity=0.124  Sum_probs=55.2

Q ss_pred             CcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCC-CccccceeeeecC---CeEEEEcCCCCCC
Q 042680          260 DAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMP-APRTMADGVLLPN---GEVLIINGADLGS  334 (530)
Q Consensus       260 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~-~~R~~~~~vvLpd---G~VlViGG~~~g~  334 (530)
                      +++.+++|+.+                 ..+..+|.......+... .+. ....-.+...-|+   |+++++||.+ | 
T Consensus       169 d~~~l~sgs~d-----------------g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D-g-  229 (753)
T 3jro_A          169 ESRKFVTGGAD-----------------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD-R-  229 (753)
T ss_dssp             GGCCEEEEETT-----------------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS-S-
T ss_pred             CCCEEEEEECC-----------------CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC-C-
Confidence            46778887754                 135667776434444443 222 1222233344588   8999999865 1 


Q ss_pred             CCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          335 GGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       335 ~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                                 .+.+||..+..+..-..+.........-.....-|||+.+++||..
T Consensus       230 -----------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D  275 (753)
T 3jro_A          230 -----------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (753)
T ss_dssp             -----------CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS
T ss_pred             -----------EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC
Confidence                       5789998876221111111111111111123456899999998864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=94.83  E-value=2.9  Score=40.00  Aligned_cols=179  Identities=9%  Similarity=0.094  Sum_probs=91.1

Q ss_pred             ccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc--
Q 042680          136 LSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--  212 (530)
Q Consensus       136 L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--  212 (530)
                      .++|+.++.|+.++ .+.+| ..+.   +....++.  .          ..       .. -.+...++|++++.|+.  
T Consensus       116 ~~~~~~l~s~~~d~-~i~iwd~~~~---~~~~~~~~--~----------~~-------~v-~~~~~~~~~~~l~~~~~d~  171 (312)
T 4ery_A          116 NPQSNLIVSGSFDE-SVRIWDVKTG---KCLKTLPA--H----------SD-------PV-SAVHFNRDGSLIVSSSYDG  171 (312)
T ss_dssp             CSSSSEEEEEETTS-CEEEEETTTC---CEEEEECC--C----------SS-------CE-EEEEECTTSSEEEEEETTS
T ss_pred             cCCCCEEEEEeCCC-cEEEEECCCC---EEEEEecC--C----------CC-------cE-EEEEEcCCCCEEEEEeCCC
Confidence            45888889988764 57777 5442   11111110  0          00       00 01234579999998874  


Q ss_pred             eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEE
Q 042680          213 RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCAR  292 (530)
Q Consensus       213 ~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~  292 (530)
                      ...+||..+++..+.+..-    ...+.  ..+  ...        .+++.+++|+.+                 ..+..
T Consensus       172 ~i~~wd~~~~~~~~~~~~~----~~~~~--~~~--~~~--------~~~~~l~~~~~d-----------------~~i~i  218 (312)
T 4ery_A          172 LCRIWDTASGQCLKTLIDD----DNPPV--SFV--KFS--------PNGKYILAATLD-----------------NTLKL  218 (312)
T ss_dssp             CEEEEETTTCCEEEEECCS----SCCCE--EEE--EEC--------TTSSEEEEEETT-----------------TEEEE
T ss_pred             cEEEEECCCCceeeEEecc----CCCce--EEE--EEC--------CCCCEEEEEcCC-----------------CeEEE
Confidence            5789999988765433211    11111  111  111        267778887754                 12455


Q ss_pred             EEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE-EecCCCCCC
Q 042680          293 MVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA-ELAPTDIPR  370 (530)
Q Consensus       293 ~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt-~la~~~~~R  370 (530)
                      ||........... ..............++|+.++.|+.+ |            .+.+||..+.   +-. .+... ...
T Consensus       219 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-g------------~i~vwd~~~~---~~~~~~~~h-~~~  281 (312)
T 4ery_A          219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED-N------------LVYIWNLQTK---EIVQKLQGH-TDV  281 (312)
T ss_dssp             EETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT-S------------CEEEEETTTC---CEEEEECCC-SSC
T ss_pred             EECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC-C------------EEEEEECCCc---hhhhhhhcc-CCc
Confidence            6664311111111 11111112222334688999988865 1            5789998776   432 22111 111


Q ss_pred             cccccceecCCCeEEEcCCC
Q 042680          371 MYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       371 ~yHS~a~LLpdGrVlv~GG~  390 (530)
                      .  .....-|++++++.++.
T Consensus       282 v--~~~~~~p~~~~l~s~~~  299 (312)
T 4ery_A          282 V--ISTACHPTENIIASAAL  299 (312)
T ss_dssp             E--EEEEECSSSSEEEEEEC
T ss_pred             E--EEEeecCcCCceEEEEc
Confidence            1  12234689998888763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=94.77  E-value=1.9  Score=42.35  Aligned_cols=71  Identities=14%  Similarity=0.098  Sum_probs=47.1

Q ss_pred             ccCCeEEEeccCCC-CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEe--C
Q 042680          136 LSDGSFLVYGGRDA-FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFA--N  211 (530)
Q Consensus       136 L~dG~v~VvGG~~~-~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~G--g  211 (530)
                      ..||++|+..|..+ .++..+ ++++   +-....++                    +...|.......+++||+.-  .
T Consensus        50 ~~~~~LyestG~~g~S~v~~vD~~Tg---kv~~~~~l--------------------~~~~FgeGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           50 YRNGYFYESTGLNGRSSIRKVDIESG---KTLQQIEL--------------------GKRYFGEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EETTEEEEEEEETTEEEEEEECTTTC---CEEEEEEC--------------------CTTCCEEEEEEETTEEEEEESSS
T ss_pred             EECCEEEEECCCCCCceEEEEECCCC---cEEEEEec--------------------CCccceeEEEEeCCEEEEEEeeC
Confidence            34899999999765 457777 7765   22222221                    01223344556688999997  4


Q ss_pred             ceEEEEeCCCCeEEEEcc
Q 042680          212 NRSVVHDPKANKIIREFP  229 (530)
Q Consensus       212 ~~~e~yDp~tn~w~~~~p  229 (530)
                      +.+.+||+++.+..+.++
T Consensus       107 ~~v~v~D~~t~~~~~ti~  124 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFN  124 (262)
T ss_dssp             SEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECccCcEEEEEE
Confidence            678999999998876665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=94.74  E-value=3  Score=42.36  Aligned_cols=138  Identities=16%  Similarity=0.113  Sum_probs=74.2

Q ss_pred             EecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          200 LLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       200 llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      +..+|+.++.|+  ....+||..+++....+..-    ..    ....+-           .+++.+++|+.+       
T Consensus       285 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----~~----~v~~~~-----------~~~~~l~~~~~d-------  338 (445)
T 2ovr_B          285 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH----QS----LTSGME-----------LKDNILVSGNAD-------  338 (445)
T ss_dssp             EEECSSEEEEEETTSCEEEEETTTCCEEEEECCC----CS----CEEEEE-----------EETTEEEEEETT-------
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCC----cc----cEEEEE-----------EeCCEEEEEeCC-------
Confidence            334888888876  46889999998766444211    11    111111           246677887754       


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEG  357 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g  357 (530)
                                ..+..+|+.......+...-.........+. .+++.+++|+.+ |            .+.+||..+.  
T Consensus       339 ----------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~s~~~d-g------------~v~iwd~~~~--  392 (445)
T 2ovr_B          339 ----------STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-FNKNFVITSSDD-G------------TVKLWDLKTG--  392 (445)
T ss_dssp             ----------SCEEEEETTTCCEEEEECSTTSCSSCEEEEE-ECSSEEEEEETT-S------------EEEEEETTTC--
T ss_pred             ----------CeEEEEECCCCcEEEEEccCCCCCCCEEEEE-ECCCEEEEEeCC-C------------eEEEEECCCC--
Confidence                      1355677653111111111111112223344 388999998865 1            5789998877  


Q ss_pred             CceE-EecCCCCCCcccc----cceecCCCeEEEcCCCCC
Q 042680          358 QRFA-ELAPTDIPRMYHS----VANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       358 ~~Wt-~la~~~~~R~yHS----~a~LLpdGrVlv~GG~~~  392 (530)
                       +.. .+.....  ..|.    ....-|||+++++|+...
T Consensus       393 -~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          393 -EFIRNLVTLES--GGSGGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             -CEEEEEEECTT--GGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             -ceeeeeecccc--CCCCceEEEEEecCCEEEEEEcccCC
Confidence             543 2211110  1111    123458999999998643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.73  E-value=0.83  Score=44.22  Aligned_cols=94  Identities=13%  Similarity=0.167  Sum_probs=53.6

Q ss_pred             CcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcc
Q 042680          260 DAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWH  338 (530)
Q Consensus       260 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~  338 (530)
                      +++.+++|+.+                 ..+..||+... .+-... ...... ..+...-|||+.+++++.+ |     
T Consensus       186 ~~~~l~~~~~d-----------------g~i~i~d~~~~-~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d-~-----  240 (369)
T 3zwl_B          186 KGKYIIAGHKD-----------------GKISKYDVSNN-YEYVDSIDLHEKS-ISDMQFSPDLTYFITSSRD-T-----  240 (369)
T ss_dssp             GGCEEEEEETT-----------------SEEEEEETTTT-TEEEEEEECCSSC-EEEEEECTTSSEEEEEETT-S-----
T ss_pred             CCCEEEEEcCC-----------------CEEEEEECCCC-cEeEEEEecCCCc-eeEEEECCCCCEEEEecCC-c-----
Confidence            57778887653                 13567777531 111111 222222 2334556899999998754 1     


Q ss_pred             cCCCCCcccEEecCCCCCCCceE-EecCCCCCCcccccceecCCCeEEEcCCCCC
Q 042680          339 CADKPSLKPMLYRPNAPEGQRFA-ELAPTDIPRMYHSVANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       339 ~~~~p~~~~eiYDP~t~~g~~Wt-~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~  392 (530)
                             .+.+||..+.   +.. .+.   . ........+.|+|+.+++|+...
T Consensus       241 -------~i~v~d~~~~---~~~~~~~---~-~~~~~~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          241 -------NSFLVDVSTL---QVLKKYE---T-DCPLNTAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             -------EEEEEETTTC---CEEEEEE---C-SSCEEEEEECSSSSEEEEEECCC
T ss_pred             -------eEEEEECCCC---ceeeeec---C-CCCceeEEecCCCceEEEeecCC
Confidence                   5789998876   432 222   1 11122345678999999988654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.64  E-value=3.5  Score=39.96  Aligned_cols=181  Identities=14%  Similarity=0.103  Sum_probs=98.2

Q ss_pred             ccCCeEEEeccCCC-CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEe--C
Q 042680          136 LSDGSFLVYGGRDA-FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFA--N  211 (530)
Q Consensus       136 L~dG~v~VvGG~~~-~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~G--g  211 (530)
                      +.++++|+..|..+ .++..+ +.++   +-....++                    +...+.......+++||+..  .
T Consensus        28 ~~~~~LyestG~~g~S~v~~vD~~tg---kv~~~~~l--------------------~~~~fgeGi~~~~~~ly~ltw~~   84 (243)
T 3mbr_X           28 YLRGHLYESTGETGRSSVRKVDLETG---RILQRAEV--------------------PPPYFGAGIVAWRDRLIQLTWRN   84 (243)
T ss_dssp             EETTEEEEEECCTTSCEEEEEETTTC---CEEEEEEC--------------------CTTCCEEEEEEETTEEEEEESSS
T ss_pred             EECCEEEEECCCCCCceEEEEECCCC---CEEEEEeC--------------------CCCcceeEEEEeCCEEEEEEeeC
Confidence            34789999999864 467777 7764   22222221                    12234455566789999997  4


Q ss_pred             ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEE
Q 042680          212 NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCA  291 (530)
Q Consensus       212 ~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~  291 (530)
                      +.+.+||+++.+..+.++- ++       .|-+.. +          ...++|+.=|.                  +.+.
T Consensus        85 ~~v~v~D~~tl~~~~ti~~-~~-------~Gwglt-~----------dg~~L~vSdgs------------------~~l~  127 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRY-PG-------EGWALT-S----------DDSHLYMSDGT------------------AVIR  127 (243)
T ss_dssp             SEEEEEETTTTEEEEEEEC-SS-------CCCEEE-E----------CSSCEEEECSS------------------SEEE
T ss_pred             CEEEEEECCcCcEEEEEeC-CC-------CceEEe-e----------CCCEEEEECCC------------------CeEE
Confidence            6789999999988766653 21       132321 1          25677776542                  2355


Q ss_pred             EEEcCCCC--CcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCC-
Q 042680          292 RMVVTSPN--PEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDI-  368 (530)
Q Consensus       292 ~~dp~~~~--~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~-  368 (530)
                      .+||..-.  .+++....+.+-...+-....+|+||+-.-.+             ..+.+-||++..-..|-.++.+.- 
T Consensus       128 ~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s-------------~~I~vIDp~tG~V~~~idl~~l~~~  194 (243)
T 3mbr_X          128 KLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLT-------------SRIARIDPASGKVVAWIDLQALVPD  194 (243)
T ss_dssp             EECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTT-------------TEEEEECTTTCBEEEEEECGGGSTT
T ss_pred             EEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCC-------------CeEEEEECCCCCEEEEEECCcCccc
Confidence            67765310  11121122223223333334599999644221             267789999983333444443321 


Q ss_pred             ------CC--cccccceecCCCeEEEcCC
Q 042680          369 ------PR--MYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       369 ------~R--~yHS~a~LLpdGrVlv~GG  389 (530)
                            +.  .--+.|.-=..+|+||+|-
T Consensus       195 ~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          195 ADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             cccccCCcCCceEEEEEcCCCCEEEEECC
Confidence                  11  1123333212578888885

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.39  E-value=1.9  Score=42.31  Aligned_cols=180  Identities=12%  Similarity=0.029  Sum_probs=96.6

Q ss_pred             cCCeEEEeccC-CCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEe--Cc
Q 042680          137 SDGSFLVYGGR-DAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFA--NN  212 (530)
Q Consensus       137 ~dG~v~VvGG~-~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~G--g~  212 (530)
                      +||++|+..|. ...++..+ +.++   +-....+.                    +...++..+.+.+++||+..  .+
T Consensus        30 ~dg~Lyvstg~~~~s~v~~iD~~tg---~v~~~i~l--------------------~~~~fgeGi~~~g~~lyv~t~~~~   86 (266)
T 2iwa_A           30 ENDTLFESTGLYGRSSVRQVALQTG---KVENIHKM--------------------DDSYFGEGLTLLNEKLYQVVWLKN   86 (266)
T ss_dssp             STTEEEEEECSTTTCEEEEEETTTC---CEEEEEEC--------------------CTTCCEEEEEEETTEEEEEETTCS
T ss_pred             CCCeEEEECCCCCCCEEEEEECCCC---CEEEEEec--------------------CCCcceEEEEEeCCEEEEEEecCC
Confidence            46899998875 34567777 7765   22222221                    01233445556678999987  46


Q ss_pred             eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEE
Q 042680          213 RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCAR  292 (530)
Q Consensus       213 ~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~  292 (530)
                      .+.+||+.+.+..+.++. + .+  .   |.++ -+          ...++|++-|.                  +.+..
T Consensus        87 ~v~viD~~t~~v~~~i~~-g-~~--~---g~gl-t~----------Dg~~l~vs~gs------------------~~l~v  130 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTH-Q-MK--D---GWGL-AT----------DGKILYGSDGT------------------SILYE  130 (266)
T ss_dssp             EEEEEETTTTEEEEEEEC-C-SS--S---CCEE-EE----------CSSSEEEECSS------------------SEEEE
T ss_pred             EEEEEECCCCcEEEEEEC-C-CC--C---eEEE-EE----------CCCEEEEECCC------------------CeEEE
Confidence            789999999988766642 1 01  1   2222 11          25678877542                  23566


Q ss_pred             EEcCCCCCcce----ecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCC-
Q 042680          293 MVVTSPNPEWK----IEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD-  367 (530)
Q Consensus       293 ~dp~~~~~~W~----~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~-  367 (530)
                      +||..  .+-.    ....+.+-.....+...||++|+....+             .++.+-||++..-..|-.++.+. 
T Consensus       131 iD~~t--~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~-------------~~V~vID~~tg~V~~~I~~~g~~~  195 (266)
T 2iwa_A          131 IDPHT--FKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQT-------------DCIARISAKDGTLLGWILLPNLRK  195 (266)
T ss_dssp             ECTTT--CCEEEEEECEETTEECCCEEEEEEETTEEEEEETTS-------------SEEEEEETTTCCEEEEEECHHHHH
T ss_pred             EECCC--CcEEEEEEECCCCcccccceeEEEECCEEEEecCCC-------------CeEEEEECCCCcEEEEEECCCccc
Confidence            77653  2111    1111122112333334499999876432             16788999988322233332110 


Q ss_pred             ------CC--CcccccceecCCC-eEEEcCCCC
Q 042680          368 ------IP--RMYHSVANLLPDG-KVFVGGSND  391 (530)
Q Consensus       368 ------~~--R~yHS~a~LLpdG-rVlv~GG~~  391 (530)
                            .+  -.-+++|. .+|| ++||+|.+-
T Consensus       196 ~~~~~~~~~~~v~nGIa~-~~~~~~lfVTgk~~  227 (266)
T 2iwa_A          196 KLIDEGFRDIDVLNGIAW-DQENKRIFVTGKLW  227 (266)
T ss_dssp             HHHHTTCTTCCCEEEEEE-ETTTTEEEEEETTC
T ss_pred             ccccccccccCceEEEEE-cCCCCEEEEECCCC
Confidence                  00  01134444 4665 799999853

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=94.27  E-value=1.4  Score=43.37  Aligned_cols=70  Identities=20%  Similarity=0.369  Sum_probs=40.4

Q ss_pred             eeeeec-CCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCC------CC--cccccceecCC-CeE
Q 042680          315 DGVLLP-NGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDI------PR--MYHSVANLLPD-GKV  384 (530)
Q Consensus       315 ~~vvLp-dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~------~R--~yHS~a~LLpd-GrV  384 (530)
                      +.++-| +|+|||..+..            ...+.+||+...   ....+.....      .+  .-++.+ +-+| |++
T Consensus       147 ~ia~~~~~g~lyv~d~~~------------~~~I~~~~~~g~---~~~~~~~~g~~~~~~~~~~~~p~gia-~d~~~g~l  210 (329)
T 3fvz_A          147 DVAVEPSTGAVFVSDGYC------------NSRIVQFSPSGK---FVTQWGEESSGSSPRPGQFSVPHSLA-LVPHLDQL  210 (329)
T ss_dssp             EEEECTTTCCEEEEECSS------------CCEEEEECTTSC---EEEEECEECCSSSCCTTEESCEEEEE-EETTTTEE
T ss_pred             EEEEeCCCCeEEEEeCCC------------CCeEEEEcCCCC---EEEEeccCCCCCCCCCcccCCCcEEE-EECCCCEE
Confidence            334456 89999998621            115788996544   3333321110      11  123443 4477 999


Q ss_pred             EEcCCCCCCCCccccCCCCcceEEEEcCC
Q 042680          385 FVGGSNDNDGYFEFAKFPTELRLEKFTPP  413 (530)
Q Consensus       385 lv~GG~~~~~~~~~~~~~t~~~vE~y~Pp  413 (530)
                      ||+....             .+|.+|++.
T Consensus       211 ~v~d~~~-------------~~I~~~~~~  226 (329)
T 3fvz_A          211 CVADREN-------------GRIQCFKTD  226 (329)
T ss_dssp             EEEETTT-------------TEEEEEETT
T ss_pred             EEEECCC-------------CEEEEEECC
Confidence            9997642             367888876

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=94.00  E-value=1.3  Score=44.20  Aligned_cols=27  Identities=11%  Similarity=0.180  Sum_probs=20.4

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEE
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKII  225 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~  225 (530)
                      ...++|++++.|+  ....+||..+.+-.
T Consensus       146 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  174 (420)
T 3vl1_A          146 KFFPSGEALISSSQDMQLKIWSVKDGSNP  174 (420)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence            3457999888887  46889999887644

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=93.98  E-value=4.1  Score=42.56  Aligned_cols=135  Identities=13%  Similarity=0.145  Sum_probs=71.8

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...||++.++.++  ....+||....... .+..-     ..+... ...   .        .+++++++|+.+      
T Consensus       433 ~~s~d~~~l~~~~~d~~v~~w~~~~~~~~-~~~~~-----~~~v~~-~~~---s--------pd~~~las~~~d------  488 (577)
T 2ymu_A          433 AFSPDDQTIASASDDKTVKLWNRNGQLLQ-TLTGH-----SSSVRG-VAF---S--------PDGQTIASASDD------  488 (577)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTSCEEE-EEECC-----SSCEEE-EEE---C--------TTSCEEEEEETT------
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCCCEEE-EEcCC-----CCCEEE-EEE---c--------CCCCEEEEEeCC------
Confidence            3457999988876  46788997655433 33221     111111 111   2        268888888754      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~  355 (530)
                                 ..+..+|..   .+-... .-...+.. +....|||+.++.++.+ |            .+.+||....
T Consensus       489 -----------~~i~iw~~~---~~~~~~~~~h~~~v~-~l~~s~dg~~l~s~~~d-g------------~v~lwd~~~~  540 (577)
T 2ymu_A          489 -----------KTVKLWNRN---GQLLQTLTGHSSSVR-GVAFSPDGQTIASASDD-K------------TVKLWNRNGQ  540 (577)
T ss_dssp             -----------SEEEEEETT---SCEEEEEECCSSCEE-EEEECTTSSCEEEEETT-S------------EEEEECTTSC
T ss_pred             -----------CEEEEEcCC---CCEEEEEeCCCCCEE-EEEEcCCCCEEEEEECc-C------------EEEEEeCCCC
Confidence                       123445532   221111 11222222 23345999999998865 1            5789995433


Q ss_pred             CCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          356 EGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       356 ~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                         ....+..-. .+  -......|||+.++.||.+
T Consensus       541 ---~~~~~~~h~-~~--v~~~~fs~dg~~l~s~~~D  570 (577)
T 2ymu_A          541 ---LLQTLTGHS-SS--VWGVAFSPDGQTIASASSD  570 (577)
T ss_dssp             ---EEEEEECCS-SC--EEEEEECTTSSCEEEEETT
T ss_pred             ---EEEEEcCCC-CC--EEEEEEcCCCCEEEEEeCC
Confidence               444432110 00  1123456999999988853

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=93.83  E-value=5.1  Score=39.39  Aligned_cols=70  Identities=9%  Similarity=0.060  Sum_probs=46.8

Q ss_pred             ccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEe--Cc
Q 042680          136 LSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFA--NN  212 (530)
Q Consensus       136 L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~G--g~  212 (530)
                      ..++++|+..|.++. +..+ ++++.   -....  +.                   ...|.......+++||+..  ++
T Consensus        62 ~~~~~Ly~stG~~g~-v~~iD~~Tgk---v~~~~--l~-------------------~~~FgeGit~~g~~Ly~ltw~~~  116 (268)
T 3nok_A           62 FHQGHFFESTGHQGT-LRQLSLESAQ---PVWME--RL-------------------GNIFAEGLASDGERLYQLTWTEG  116 (268)
T ss_dssp             EETTEEEEEETTTTE-EEECCSSCSS---CSEEE--EC-------------------TTCCEEEEEECSSCEEEEESSSC
T ss_pred             EECCEEEEEcCCCCE-EEEEECCCCc---EEeEE--CC-------------------CCcceeEEEEeCCEEEEEEccCC
Confidence            447899999998765 7777 77652   11111  11                   1223344566688999997  46


Q ss_pred             eEEEEeCCCCeEEEEccC
Q 042680          213 RSVVHDPKANKIIREFPQ  230 (530)
Q Consensus       213 ~~e~yDp~tn~w~~~~p~  230 (530)
                      .+..||+++.+..+.++-
T Consensus       117 ~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A          117 LLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCcCcEEEEEeC
Confidence            789999999998876653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=93.81  E-value=4.4  Score=37.98  Aligned_cols=139  Identities=14%  Similarity=0.143  Sum_probs=70.1

Q ss_pred             ceEE-EecCCcEEEEe--CceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCC
Q 042680          196 PFVY-LLPDGNVYVFA--NNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVRE  272 (530)
Q Consensus       196 p~~~-llp~G~lfv~G--g~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~  272 (530)
                      |+.. ..++|+||+..  +....+||+. ++.. .+. ++. ....|   ..+.+  .        .++++|++....  
T Consensus       106 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~-~~~-~~~~~---~~i~~--d--------~~g~l~v~~~~~--  166 (300)
T 2qc5_A          106 PYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYD-LPN-KGSYP---AFITL--G--------SDNALWFTENQN--  166 (300)
T ss_dssp             EEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEE-CSS-TTCCE---EEEEE--C--------TTSSEEEEETTT--
T ss_pred             CccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ecc-CCC-CCCCc---eeEEE--C--------CCCCEEEEecCC--
Confidence            4443 34689999986  4578889998 6554 232 221 11122   11211  1        257788764211  


Q ss_pred             ccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccc-eeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEec
Q 042680          273 GLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMA-DGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYR  351 (530)
Q Consensus       273 ~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~-~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYD  351 (530)
                                     ..+.+||+.   .++....++..-... +..+-++|+||+.....             ..+.+||
T Consensus       167 ---------------~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-------------~~i~~~~  215 (300)
T 2qc5_A          167 ---------------NSIGRITNT---GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMG-------------NKIGRIT  215 (300)
T ss_dssp             ---------------TEEEEECTT---CCEEEEECSSTTCCEEEEEECTTSSEEEEETTT-------------TEEEEEC
T ss_pred             ---------------CeEEEECCC---CcEEEeeCCCCCCCcceEEECCCCCEEEEccCC-------------CEEEEEc
Confidence                           134566662   333322222111112 33344789999976422             1467899


Q ss_pred             CCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          352 PNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       352 P~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      + +.   ++...........-++ .++-++|++|++..
T Consensus       216 ~-~g---~~~~~~~~~~~~~~~~-i~~d~~g~l~v~~~  248 (300)
T 2qc5_A          216 T-TG---EISEYDIPTPNARPHA-ITAGKNSEIWFTEW  248 (300)
T ss_dssp             T-TC---CEEEEECSSTTCCEEE-EEECSTTCEEEEET
T ss_pred             C-CC---cEEEEECCCCCCCceE-EEECCCCCEEEecc
Confidence            8 44   5554321111111122 33457899999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=93.80  E-value=1.7  Score=43.59  Aligned_cols=141  Identities=13%  Similarity=0.120  Sum_probs=74.3

Q ss_pred             EEecCCcEEEEeC-ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          199 YLLPDGNVYVFAN-NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       199 ~llp~G~lfv~Gg-~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      ...|||++++.+. ....+|+..+++...... ..+  ..... ......|           +++.++.++.+.+.    
T Consensus       183 ~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~-~~~--~~~~v-~~v~fsp-----------dg~~l~~~s~d~~~----  243 (365)
T 4h5i_A          183 HFSTDGKVVAYITGSSLEVISTVTGSCIARKT-DFD--KNWSL-SKINFIA-----------DDTVLIAASLKKGK----  243 (365)
T ss_dssp             EECTTSSEEEEECSSCEEEEETTTCCEEEEEC-CCC--TTEEE-EEEEEEE-----------TTEEEEEEEESSSC----
T ss_pred             EEccCCceEEeccceeEEEEEeccCcceeeee-cCC--CCCCE-EEEEEcC-----------CCCEEEEEecCCcc----
Confidence            3468999998876 467888888876542221 111  11111 1112222           67888887754221    


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceec---CCC-CccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIE---KMP-APRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~---~M~-~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                               ...+..++...  ..+...   .+. ....--+...-|||+++++|+.+.             ++.+||-.
T Consensus       244 ---------~~~i~~~~~~~--~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~-------------~V~iwd~~  299 (365)
T 4h5i_A          244 ---------GIVLTKISIKS--GNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN-------------SIALVKLK  299 (365)
T ss_dssp             ---------CEEEEEEEEET--TEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS-------------CEEEEETT
T ss_pred             ---------eeEEeeccccc--ceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC-------------EEEEEECC
Confidence                     01123344332  222111   111 111111233459999999998751             57899987


Q ss_pred             CCCCCceE-EecCCCCCCcccc----cceecCCCeEEEcCCCC
Q 042680          354 APEGQRFA-ELAPTDIPRMYHS----VANLLPDGKVFVGGSND  391 (530)
Q Consensus       354 t~~g~~Wt-~la~~~~~R~yHS----~a~LLpdGrVlv~GG~~  391 (530)
                      +.   +-. .+-      ..|.    ....-|||+.++.|+.+
T Consensus       300 ~~---~~~~~~~------~gH~~~V~~v~fSpdg~~laS~S~D  333 (365)
T 4h5i_A          300 DL---SMSKIFK------QAHSFAITEVTISPDSTYVASVSAA  333 (365)
T ss_dssp             TT---EEEEEET------TSSSSCEEEEEECTTSCEEEEEETT
T ss_pred             CC---cEEEEec------CcccCCEEEEEECCCCCEEEEEeCC
Confidence            76   422 211      1233    23356999999999864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=93.77  E-value=6.9  Score=40.12  Aligned_cols=27  Identities=11%  Similarity=0.095  Sum_probs=19.7

Q ss_pred             EEec-CCcEEEEeC-ceEEEEeCCCCeEE
Q 042680          199 YLLP-DGNVYVFAN-NRSVVHDPKANKII  225 (530)
Q Consensus       199 ~llp-~G~lfv~Gg-~~~e~yDp~tn~w~  225 (530)
                      .+-+ +|+||+.-. ....+||+.++...
T Consensus       225 av~p~~g~lyv~d~~~~I~~~d~~~~~~~  253 (409)
T 3hrp_A          225 ALDETEEWLYFVDSNKNFGRFNVKTQEVT  253 (409)
T ss_dssp             EECTTSSEEEEECTTCEEEEEETTTCCEE
T ss_pred             EEeCCCCeEEEEECCCcEEEEECCCCCEE
Confidence            4556 899999644 35789999987654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.69  E-value=1.2  Score=43.23  Aligned_cols=57  Identities=14%  Similarity=0.170  Sum_probs=34.4

Q ss_pred             CCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCC---CeEEEcCCCC
Q 042680          321 NGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPD---GKVFVGGSND  391 (530)
Q Consensus       321 dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpd---GrVlv~GG~~  391 (530)
                      |++.+++|+.+ |            .+.+||..+.. ..|.....+......-.....-||   ++++++|+..
T Consensus       171 ~~~~l~~~~~d-g------------~i~i~d~~~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          171 ESRKFVTGGAD-N------------LVKIWKYNSDA-QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             TTCEEEEEETT-S------------CEEEEEEETTT-TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             CCCEEEEEeCC-C------------eEEEEEecCCC-cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence            79999998865 1            57889986651 134443333222222223445688   8999998854

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=93.51  E-value=5.1  Score=39.45  Aligned_cols=134  Identities=13%  Similarity=0.124  Sum_probs=69.6

Q ss_pred             EEecCCc-EEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          199 YLLPDGN-VYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       199 ~llp~G~-lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      ...++|+ ||+.+.  ....+||..+++....+.. .    ..+  ....+.|          ....+|++++.+     
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~----~~~--~~~~~s~----------dg~~l~~~~~~~-----  137 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-G----KSP--LGLALSP----------DGKKLYVTNNGD-----  137 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-S----SSE--EEEEECT----------TSSEEEEEETTT-----
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-C----CCc--ceEEECC----------CCCEEEEEeCCC-----
Confidence            3457887 556653  4789999999987644421 1    111  1112211          133566776533     


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEE-EEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVL-IINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~Vl-ViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                                  ..+.++|+..  .+.... ...  ..-.....-|||+.+ +.++..             ..+.+||..
T Consensus       138 ------------~~v~~~d~~~--~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~-------------~~v~~~d~~  188 (391)
T 1l0q_A          138 ------------KTVSVINTVT--KAVINTVSVG--RSPKGIAVTPDGTKVYVANFDS-------------MSISVIDTV  188 (391)
T ss_dssp             ------------TEEEEEETTT--TEEEEEEECC--SSEEEEEECTTSSEEEEEETTT-------------TEEEEEETT
T ss_pred             ------------CEEEEEECCC--CcEEEEEecC--CCcceEEECCCCCEEEEEeCCC-------------CEEEEEECC
Confidence                        2356677653  332222 211  112344556899655 555432             157899998


Q ss_pred             CCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          354 APEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       354 t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      +.   +....-..  ...-. ...+-|||+.+++++
T Consensus       189 ~~---~~~~~~~~--~~~~~-~~~~~~~g~~l~~~~  218 (391)
T 1l0q_A          189 TN---SVIDTVKV--EAAPS-GIAVNPEGTKAYVTN  218 (391)
T ss_dssp             TT---EEEEEEEC--SSEEE-EEEECTTSSEEEEEE
T ss_pred             CC---eEEEEEec--CCCcc-ceEECCCCCEEEEEe
Confidence            87   54432211  11112 234568997666665

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.50  E-value=1.3  Score=42.86  Aligned_cols=146  Identities=11%  Similarity=0.018  Sum_probs=76.0

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...++|+.++.|+.  ...+||..+++....+. .+     .+... ....           .+++.+++++.+...   
T Consensus        81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-----~~v~~-~~~~-----------~~~~~l~~~~~~~~~---  139 (369)
T 3zwl_B           81 DVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SP-----VPVKR-VEFS-----------PCGNYFLAILDNVMK---  139 (369)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CS-----SCEEE-EEEC-----------TTSSEEEEEECCBTT---
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cC-----CCeEE-EEEc-----------cCCCEEEEecCCccC---
Confidence            34578998888864  68899999988764443 11     11111 1221           256777776643111   


Q ss_pred             ccccccccccCCcEEEEEcCCCCCc--ceecC--------CCCc-cccceeeeecCCeEEEEcCCCCCCCCcccCCCCCc
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPE--WKIEK--------MPAP-RTMADGVLLPNGEVLIINGADLGSGGWHCADKPSL  345 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~--W~~~~--------M~~~-R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~  345 (530)
                               ....+..+|+......  +....        .... ........-|||+.+++|+.+ |            
T Consensus       140 ---------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g------------  197 (369)
T 3zwl_B          140 ---------NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-G------------  197 (369)
T ss_dssp             ---------BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-S------------
T ss_pred             ---------CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-C------------
Confidence                     1123555665432111  11110        0000 023334455899999998764 1            


Q ss_pred             ccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          346 KPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       346 ~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      .+.+||..++. +....+...   ...-....+-|||+.+++|+..
T Consensus       198 ~i~i~d~~~~~-~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d  239 (369)
T 3zwl_B          198 KISKYDVSNNY-EYVDSIDLH---EKSISDMQFSPDLTYFITSSRD  239 (369)
T ss_dssp             EEEEEETTTTT-EEEEEEECC---SSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCc-EeEEEEecC---CCceeEEEECCCCCEEEEecCC
Confidence            57899998731 112222211   1111223456899999998753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.45  E-value=0.47  Score=46.43  Aligned_cols=144  Identities=13%  Similarity=0.127  Sum_probs=78.7

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...++|+++++|+  ....+||..++++. .+..+.+.  ..+... ....           .+++.+++|+.+      
T Consensus        15 ~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~h--~~~v~~-~~~~-----------~~~~~l~~~~~d------   73 (372)
T 1k8k_C           15 AWNKDRTQIAICPNNHEVHIYEKSGNKWV-QVHELKEH--NGQVTG-VDWA-----------PDSNRIVTCGTD------   73 (372)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEE-EEEEEECC--SSCEEE-EEEE-----------TTTTEEEEEETT------
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCCcEE-eeeeecCC--CCcccE-EEEe-----------CCCCEEEEEcCC------
Confidence            4457999999986  46889999998743 22222211  111111 1111           257778887754      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-C-CCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-K-MPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~-M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                 ..+..+|...  .++... . ........+....|||+.+++++.+ |            .+.+||..+
T Consensus        74 -----------g~i~vwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~------------~v~i~d~~~  127 (372)
T 1k8k_C           74 -----------RNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-R------------VISICYFEQ  127 (372)
T ss_dssp             -----------SCEEEEEEET--TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT-S------------SEEEEEEET
T ss_pred             -----------CeEEEEECCC--CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC-C------------EEEEEEecC
Confidence                       1245677653  444432 2 2222223344556899999998864 1            467888876


Q ss_pred             CCCCceEEecCCCCC-CcccccceecCCCeEEEcCCCC
Q 042680          355 PEGQRFAELAPTDIP-RMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~-R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      ..  .|........+ ...-......||++.+++|+..
T Consensus       128 ~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C          128 EN--DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TT--TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CC--cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            61  23322222111 1111223456899999998753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=93.41  E-value=0.11  Score=51.43  Aligned_cols=144  Identities=9%  Similarity=0.040  Sum_probs=74.5

Q ss_pred             EecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          200 LLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       200 llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      ..++|++++.|+.  ...+||..++.|. .+..+.+.  ..+.  .++  ...        .+++.+++|+.+       
T Consensus        19 ~s~~g~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~h--~~~v--~~~--~~s--------~~~~~l~s~s~d-------   76 (377)
T 3dwl_C           19 FNSQRTEFVTTTATNQVELYEQDGNGWK-HARTFSDH--DKIV--TCV--DWA--------PKSNRIVTCSQD-------   76 (377)
T ss_dssp             ECSSSSEEECCCSSSCBCEEEEETTEEE-ECCCBCCC--SSCE--EEE--EEC--------TTTCCEEEEETT-------
T ss_pred             ECCCCCEEEEecCCCEEEEEEccCCceE-EEEEEecC--CceE--EEE--EEe--------CCCCEEEEEeCC-------
Confidence            4579999998863  5789999999775 44444321  1111  111  111        257778887754       


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceec-CC-CCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIE-KM-PAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M-~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~  355 (530)
                                .++..+|+.. ...|... .+ .....-.+....|||+.+++|+.+.             .+.+||..+.
T Consensus        77 ----------~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~iwd~~~~  132 (377)
T 3dwl_C           77 ----------RNAYVYEKRP-DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR-------------VISVCYFEQE  132 (377)
T ss_dssp             ----------SSEEEC-------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS-------------CEEECCC---
T ss_pred             ----------CeEEEEEcCC-CCceeeeeEecccCCceEEEEECCCCCEEEEEecCC-------------eEEEEEECCc
Confidence                      1245566653 1124432 22 2222233444458999999988651             5778998776


Q ss_pred             CCCceEEecCCCC-CCcccccceecCCCeEEEcCCCC
Q 042680          356 EGQRFAELAPTDI-PRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       356 ~g~~Wt~la~~~~-~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      .  .|.....+.. -...-......|||+.++.|+..
T Consensus       133 ~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d  167 (377)
T 3dwl_C          133 N--DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD  167 (377)
T ss_dssp             ----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred             c--cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence            1  2332222221 11111223456899999998864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=93.35  E-value=0.28  Score=48.57  Aligned_cols=146  Identities=14%  Similarity=0.112  Sum_probs=67.0

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCe-EEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANK-IIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~-w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      ...++|++++.|+  ....+||..+++ |. ....+.+.  ..+  -.++.  ..        .+++.+++|+.+     
T Consensus        62 ~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~-~~~~~~~~--~~~--v~~~~--~~--------~~~~~l~~~~~d-----  121 (377)
T 3dwl_C           62 DWAPKSNRIVTCSQDRNAYVYEKRPDGTWK-QTLVLLRL--NRA--ATFVR--WS--------PNEDKFAVGSGA-----  121 (377)
T ss_dssp             EECTTTCCEEEEETTSSEEEC------CCC-CEEECCCC--SSC--EEEEE--CC--------TTSSCCEEEESS-----
T ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCCcee-eeeEeccc--CCc--eEEEE--EC--------CCCCEEEEEecC-----
Confidence            3457899888887  468899998876 32 11111111  111  11111  11        257777887754     


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceec-CCC--CccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMP--APRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP  352 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~--~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP  352 (530)
                                  ..+..+|... ...|... .+.  ....-.+....|||+.+++|+.+ |            ++.+||.
T Consensus       122 ------------~~i~iwd~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~------------~i~iwd~  175 (377)
T 3dwl_C          122 ------------RVISVCYFEQ-ENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-R------------KAYVLSA  175 (377)
T ss_dssp             ------------SCEEECCC------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-S------------CEEEEEE
T ss_pred             ------------CeEEEEEECC-cccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-C------------EEEEEEE
Confidence                        1244556543 2234332 222  22223344556899999998865 1            4667886


Q ss_pred             CCCC------CC-------ceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          353 NAPE------GQ-------RFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       353 ~t~~------g~-------~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      .+..      ..       .-..+..... ...-.....-|||+.+++|+..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d  226 (377)
T 3dwl_C          176 YVRDVDAKPEASVWGSRLPFNTVCAEYPS-GGWVHAVGFSPSGNALAYAGHD  226 (377)
T ss_dssp             CCSSCC-CCCSCSSCSCCCEEEEEECCCC-SSSEEEEEECTTSSCEEEEETT
T ss_pred             EecccCCCccccccccccchhhhhhcccC-CceEEEEEECCCCCEEEEEeCC
Confidence            5321      00       1112222211 1111123456899999988754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=93.29  E-value=4.2  Score=40.48  Aligned_cols=176  Identities=16%  Similarity=0.180  Sum_probs=88.0

Q ss_pred             ccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCC-cEEEEeC--
Q 042680          136 LSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDG-NVYVFAN--  211 (530)
Q Consensus       136 L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G-~lfv~Gg--  211 (530)
                      .+||+.++.|+.++ ++.+| ..++     .....+ ..         |..       ..+ .+...++| ++|+.|+  
T Consensus       136 spdg~~l~sgs~d~-~i~iwd~~~~-----~~~~~~-~~---------h~~-------~V~-~~~~~~~~~~~l~s~s~D  191 (344)
T 4gqb_B          136 LSSGTQAVSGSKDI-CIKVWDLAQQ-----VVLSSY-RA---------HAA-------QVT-CVAASPHKDSVFLSCSED  191 (344)
T ss_dssp             CTTSSEEEEEETTS-CEEEEETTTT-----EEEEEE-CC---------CSS-------CEE-EEEECSSCTTEEEEEETT
T ss_pred             CCCCCEEEEEeCCC-eEEEEECCCC-----cEEEEE-cC---------cCC-------ceE-EEEecCCCCCceeeeccc
Confidence            56899999988764 67778 5542     111111 00         000       000 12234566 5888876  


Q ss_pred             ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEE
Q 042680          212 NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCA  291 (530)
Q Consensus       212 ~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~  291 (530)
                      ..+.+||..+++....+.. .  ....... +....|          .+++++++|+.+                 ..+.
T Consensus       192 ~~v~iwd~~~~~~~~~~~~-~--~~~~~~~-~~~~~p----------~~~~~l~sg~~d-----------------g~v~  240 (344)
T 4gqb_B          192 NRILLWDTRCPKPASQIGC-S--APGYLPT-SLAWHP----------QQSEVFVFGDEN-----------------GTVS  240 (344)
T ss_dssp             SCEEEEETTSSSCEEECC-------CCCEE-EEEECS----------SCTTEEEEEETT-----------------SEEE
T ss_pred             cccccccccccceeeeeec-c--eeeccce-eeeecC----------CCCcceEEeccC-----------------CcEE
Confidence            4688999998875533321 1  0111100 112222          257888888754                 1355


Q ss_pred             EEEcCCCCCcceecCCCCccccceeeeecCC-eEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCC
Q 042680          292 RMVVTSPNPEWKIEKMPAPRTMADGVLLPNG-EVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPR  370 (530)
Q Consensus       292 ~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG-~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R  370 (530)
                      .+|........+.. -....+ .+...-||| ++++.|+.+ |            ++.+||-.+.   +-..+.      
T Consensus       241 ~wd~~~~~~~~~~~-~h~~~v-~~v~fsp~g~~~lasgs~D-~------------~i~vwd~~~~---~~~~~~------  296 (344)
T 4gqb_B          241 LVDTKSTSCVLSSA-VHSQCV-TGLVFSPHSVPFLASLSED-C------------SLAVLDSSLS---ELFRSQ------  296 (344)
T ss_dssp             EEESCC--CCEEEE-CCSSCE-EEEEECSSSSCCEEEEETT-S------------CEEEECTTCC---EEEEEC------
T ss_pred             EEECCCCcEEEEEc-CCCCCE-EEEEEccCCCeEEEEEeCC-C------------eEEEEECCCC---cEEEEc------
Confidence            67765311111111 111111 122334788 577777654 1            5789998776   433221      


Q ss_pred             ccccc----ceecCCCe-EEEcCCCC
Q 042680          371 MYHSV----ANLLPDGK-VFVGGSND  391 (530)
Q Consensus       371 ~yHS~----a~LLpdGr-Vlv~GG~~  391 (530)
                       .|..    ...-|||+ +++.||.+
T Consensus       297 -~H~~~V~~v~~sp~~~~llas~s~D  321 (344)
T 4gqb_B          297 -AHRDFVRDATWSPLNHSLLTTVGWD  321 (344)
T ss_dssp             -CCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             -CCCCCEEEEEEeCCCCeEEEEEcCC
Confidence             1321    22347775 77777754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=93.18  E-value=1.9  Score=41.65  Aligned_cols=140  Identities=14%  Similarity=0.157  Sum_probs=72.5

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...++|++++.|+.  ...+||..+++-...+..-    ...   -.++.+  .        .+++.+++|+.+      
T Consensus        62 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h----~~~---v~~~~~--~--------~~~~~l~sgs~D------  118 (304)
T 2ynn_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH----PDY---IRSIAV--H--------PTKPYVLSGSDD------  118 (304)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC----SSC---EEEEEE--C--------SSSSEEEEEETT------
T ss_pred             EEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCC----CCc---EEEEEE--c--------CCCCEEEEECCC------
Confidence            34579999988874  6889999998765444211    111   111211  1        257778888764      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-CCC-Cccccceeeeec-CCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-KMP-APRTMADGVLLP-NGEVLIINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~-~~R~~~~~vvLp-dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                                 .++..+|..   ..+... .+. ....-.+...-| |+++++.|+.+.             ++.+||..
T Consensus       119 -----------~~v~lWd~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-------------~v~iwd~~  171 (304)
T 2ynn_A          119 -----------LTVKLWNWE---NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-------------TVKVWSLG  171 (304)
T ss_dssp             -----------SCEEEEEGG---GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS-------------EEEEEETT
T ss_pred             -----------CeEEEEECC---CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC-------------eEEEEECC
Confidence                       135566765   223322 111 111112223336 678999888651             57889986


Q ss_pred             CCCCCceEEecCCCCCCcccccce-ecCCCeEEEcCCCC
Q 042680          354 APEGQRFAELAPTDIPRMYHSVAN-LLPDGKVFVGGSND  391 (530)
Q Consensus       354 t~~g~~Wt~la~~~~~R~yHS~a~-LLpdGrVlv~GG~~  391 (530)
                      +... ..+....  ..+.-...+. ..+|++.++.|+..
T Consensus       172 ~~~~-~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~D  207 (304)
T 2ynn_A          172 QSTP-NFTLTTG--QERGVNYVDYYPLPDKPYMITASDD  207 (304)
T ss_dssp             CSSC-SEEEECC--CTTCEEEEEECCSTTCCEEEEEETT
T ss_pred             CCCc-cceeccC--CcCcEEEEEEEEcCCCCEEEEEcCC
Confidence            5411 2222111  0010011111 13588899988853

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=93.03  E-value=13  Score=41.15  Aligned_cols=137  Identities=11%  Similarity=0.127  Sum_probs=74.7

Q ss_pred             EecCCcEEEEeC-ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc
Q 042680          200 LLPDGNVYVFAN-NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE  278 (530)
Q Consensus       200 llp~G~lfv~Gg-~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~  278 (530)
                      .-.+|+|++... ....+||+.++++. .+..-.+.+.+.   -.+++.        +  .++.|++... . +      
T Consensus       502 ~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~---i~~i~~--------d--~~g~lWi~T~-~-G------  559 (781)
T 3v9f_A          502 QDSEGRFWIGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNT---INQIYR--------S--SKGQMWLATG-E-G------  559 (781)
T ss_dssp             ECTTCCEEEEESSSCEEEECTTCCEEE-EECTTTTCSCSC---EEEEEE--------C--TTSCEEEEET-T-E------
T ss_pred             EcCCCCEEEEEcCCCEEEEeCCCCeEE-EccCCCCCCCCe---eEEEEE--------C--CCCCEEEEEC-C-C------
Confidence            345899988764 67889999999887 443211101111   012211        1  2677776532 1 1      


Q ss_pred             ccccccccCCcE-EEEEcCCCCCccee---c-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          279 EEKRFVNALDDC-ARMVVTSPNPEWKI---E-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       279 ~~~~~~~a~~s~-~~~dp~~~~~~W~~---~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                                 . .+||+..  .+++.   . .++.... .+.+.-.+|+|++.+. . |             ..+|||+
T Consensus       560 -----------lv~~~d~~~--~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-~-G-------------l~~~~~~  610 (781)
T 3v9f_A          560 -----------LVCFPSARN--FDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-T-G-------------ISCYITS  610 (781)
T ss_dssp             -----------EEEESCTTT--CCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-S-C-------------EEEEETT
T ss_pred             -----------ceEEECCCC--CcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-C-c-------------eEEEECC
Confidence                       2 3455542  33432   2 3554433 3344446799988542 2 2             4689999


Q ss_pred             CCCCCceEEecC---CCCCCcccccceecCCCeEEEcCCC
Q 042680          354 APEGQRFAELAP---TDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       354 t~~g~~Wt~la~---~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      +.   ++.....   ++.......+++..+||++|++|.+
T Consensus       611 ~~---~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~  647 (781)
T 3v9f_A          611 KK---CFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSIN  647 (781)
T ss_dssp             TT---EEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETT
T ss_pred             CC---ceEEecccCCccccccccCceEECCCCEEEEECCC
Confidence            88   7765432   2222222234556789999998864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=93.02  E-value=7.7  Score=38.39  Aligned_cols=130  Identities=16%  Similarity=0.243  Sum_probs=70.8

Q ss_pred             ecCCcEEEEe-CceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccc
Q 042680          201 LPDGNVYVFA-NNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEE  279 (530)
Q Consensus       201 lp~G~lfv~G-g~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~  279 (530)
                      +.+|.||+.+ +....++|+++++.....+ .+    ..  .+..+             .++.||+....          
T Consensus       237 ~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~-~~----~~--~~~~~-------------~~~~l~~~~~~----------  286 (376)
T 3q7m_A          237 VVNGVVFALAYNGNLTALDLRSGQIMWKRE-LG----SV--NDFIV-------------DGNRIYLVDQN----------  286 (376)
T ss_dssp             EETTEEEEECTTSCEEEEETTTCCEEEEEC-CC----CE--EEEEE-------------ETTEEEEEETT----------
T ss_pred             EECCEEEEEecCcEEEEEECCCCcEEeecc-CC----CC--CCceE-------------ECCEEEEEcCC----------
Confidence            3488888876 3467899999885332221 11    11  01111             26788776421          


Q ss_pred             cccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCc
Q 042680          280 EKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQR  359 (530)
Q Consensus       280 ~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~  359 (530)
                              ..+.+||+.+....|+...+.. +.....++ .+|+||+... . |            ...+||+++.. ..
T Consensus       287 --------g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~-~~~~l~v~~~-~-g------------~l~~~d~~tG~-~~  341 (376)
T 3q7m_A          287 --------DRVMALTIDGGVTLWTQSDLLH-RLLTSPVL-YNGNLVVGDS-E-G------------YLHWINVEDGR-FV  341 (376)
T ss_dssp             --------CCEEEEETTTCCEEEEECTTTT-SCCCCCEE-ETTEEEEECT-T-S------------EEEEEETTTCC-EE
T ss_pred             --------CeEEEEECCCCcEEEeecccCC-CcccCCEE-ECCEEEEEeC-C-C------------eEEEEECCCCc-EE
Confidence                    1256788876556687753332 23333343 4888887542 1 1            46789998861 13


Q ss_pred             eEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          360 FAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       360 Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      |+.-.  .-.....+.  +..+|+||+...
T Consensus       342 ~~~~~--~~~~~~~~~--~~~~~~l~v~~~  367 (376)
T 3q7m_A          342 AQQKV--DSSGFQTEP--VAADGKLLIQAK  367 (376)
T ss_dssp             EEEEC--CTTCBCSCC--EEETTEEEEEBT
T ss_pred             EEEec--CCCcceeCC--EEECCEEEEEeC
Confidence            54321  111222222  234999998765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=93.01  E-value=0.55  Score=46.58  Aligned_cols=145  Identities=10%  Similarity=0.082  Sum_probs=77.5

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...|+|++++.|+.  .+.+||..+++|.....-..+ . .    +...-+...        .+++.+++|+.+.     
T Consensus        23 ~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~-h-~----~~v~~~~~s--------p~g~~l~s~s~D~-----   83 (345)
T 3fm0_A           23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG-H-Q----RTVRKVAWS--------PCGNYLASASFDA-----   83 (345)
T ss_dssp             EECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSS-C-S----SCEEEEEEC--------TTSSEEEEEETTS-----
T ss_pred             EECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccc-c-C----CcEEEEEEC--------CCCCEEEEEECCC-----
Confidence            34579999998874  688999999987522111111 1 1    111111112        2678888887651     


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-CC--CCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-KM--PAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M--~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                                  ++..+|...  ..++.. .+  ....+ .+...-|||+.++.|+.+.             ++.+||..
T Consensus        84 ------------~v~iw~~~~--~~~~~~~~~~~h~~~v-~~v~~sp~~~~l~s~s~D~-------------~v~iwd~~  135 (345)
T 3fm0_A           84 ------------TTCIWKKNQ--DDFECVTTLEGHENEV-KSVAWAPSGNLLATCSRDK-------------SVWVWEVD  135 (345)
T ss_dssp             ------------CEEEEEECC--C-EEEEEEECCCSSCE-EEEEECTTSSEEEEEETTS-------------CEEEEEEC
T ss_pred             ------------cEEEEEccC--CCeEEEEEccCCCCCc-eEEEEeCCCCEEEEEECCC-------------eEEEEECC
Confidence                        234555542  333322 22  12222 2334458999999998651             57789887


Q ss_pred             CCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCC
Q 042680          354 APEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       354 t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~  392 (530)
                      +..  .+..+..+......-.....-|||++++.|+...
T Consensus       136 ~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~  172 (345)
T 3fm0_A          136 EED--EYECVSVLNSHTQDVKHVVWHPSQELLASASYDD  172 (345)
T ss_dssp             TTS--CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS
T ss_pred             CCC--CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC
Confidence            651  2332221111111112234568999999988643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=92.66  E-value=8.1  Score=37.75  Aligned_cols=19  Identities=5%  Similarity=0.006  Sum_probs=14.7

Q ss_pred             eeEEEEeCCCCcEEEcccc
Q 042680           99 CHSIFYDYNKNAVKALKVQ  117 (530)
Q Consensus        99 a~~~~yDp~t~~w~~l~~~  117 (530)
                      -+.+.+|+.+++++.+...
T Consensus        29 i~~~~~d~~~g~~~~~~~~   47 (361)
T 3scy_A           29 IYTFRFNEETGESLPLSDA   47 (361)
T ss_dssp             EEEEEEETTTCCEEEEEEE
T ss_pred             EEEEEEeCCCCCEEEeecc
Confidence            4577789999998887654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=92.57  E-value=2.6  Score=41.30  Aligned_cols=137  Identities=18%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             EecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          200 LLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       200 llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      ..+++++++.|+  ....+||..+++..+.+..-+     ..... ...-           .+++.+++|+.+       
T Consensus        88 ~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~-----~~~~~-~~~s-----------pdg~~l~~g~~d-------  143 (321)
T 3ow8_A           88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP-----VDAWT-LAFS-----------PDSQYLATGTHV-------  143 (321)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCT-----TCCCC-EEEC-----------TTSSEEEEECTT-------
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC-----ccEEE-EEEC-----------CCCCEEEEEcCC-------
Confidence            446888888886  468899999987664443211     11111 1221           267888888754       


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEG  357 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g  357 (530)
                                ..+..+|.......+... .. .....+...-|||+.+++|+.+ |            .+.+||..+.  
T Consensus       144 ----------g~v~i~~~~~~~~~~~~~-~~-~~~v~~~~~spdg~~lasg~~d-g------------~i~iwd~~~~--  196 (321)
T 3ow8_A          144 ----------GKVNIFGVESGKKEYSLD-TR-GKFILSIAYSPDGKYLASGAID-G------------IINIFDIATG--  196 (321)
T ss_dssp             ----------SEEEEEETTTCSEEEEEE-CS-SSCEEEEEECTTSSEEEEEETT-S------------CEEEEETTTT--
T ss_pred             ----------CcEEEEEcCCCceeEEec-CC-CceEEEEEECCCCCEEEEEcCC-C------------eEEEEECCCC--
Confidence                      124556665322222211 11 1112234456999999998865 1            5789999876  


Q ss_pred             CceE-EecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          358 QRFA-ELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       358 ~~Wt-~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                       +-. .+...   ...-.....-|||+.++.|+..
T Consensus       197 -~~~~~~~~h---~~~v~~l~~spd~~~l~s~s~d  227 (321)
T 3ow8_A          197 -KLLHTLEGH---AMPIRSLTFSPDSQLLVTASDD  227 (321)
T ss_dssp             -EEEEEECCC---SSCCCEEEECTTSCEEEEECTT
T ss_pred             -cEEEEEccc---CCceeEEEEcCCCCEEEEEcCC
Confidence             432 22211   1111123456899999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=92.50  E-value=12  Score=40.53  Aligned_cols=137  Identities=15%  Similarity=0.134  Sum_probs=70.1

Q ss_pred             ecCC--cEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          201 LPDG--NVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       201 lp~G--~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      .+++  .+++.|+  ..+.+||..+++....+..   . .. +.  .++.  ..        .+++++++|+.+ +    
T Consensus       526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~---h-~~-~v--~~v~--~s--------pdg~~l~sg~~D-g----  583 (694)
T 3dm0_A          526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG---H-TG-YV--STVA--VS--------PDGSLCASGGKD-G----  583 (694)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC---C-SS-CE--EEEE--EC--------TTSSEEEEEETT-S----
T ss_pred             eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC---C-CC-CE--EEEE--Ee--------CCCCEEEEEeCC-C----
Confidence            4555  4666665  4688999998876543321   1 11 11  1111  11        268888888865 1    


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPE  356 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~  356 (530)
                                  .+..+|+..  .+-.. .+.......+...-||+++++.+...              .+.+||..+. 
T Consensus       584 ------------~i~iwd~~~--~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~--------------~i~iwd~~~~-  633 (694)
T 3dm0_A          584 ------------VVLLWDLAE--GKKLY-SLEANSVIHALCFSPNRYWLCAATEH--------------GIKIWDLESK-  633 (694)
T ss_dssp             ------------BCEEEETTT--TEEEE-CCBCSSCEEEEEECSSSSEEEEEETT--------------EEEEEETTTT-
T ss_pred             ------------eEEEEECCC--CceEE-EecCCCcEEEEEEcCCCcEEEEEcCC--------------CEEEEECCCC-
Confidence                        244566643  21111 22222223344455888887765422              3678887766 


Q ss_pred             CCceE-EecCC--------------CCC--CcccccceecCCCeEEEcCCCC
Q 042680          357 GQRFA-ELAPT--------------DIP--RMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       357 g~~Wt-~la~~--------------~~~--R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                        +-. .+...              ...  ..+.+....-|||+.++.||.+
T Consensus       634 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D  683 (694)
T 3dm0_A          634 --SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD  683 (694)
T ss_dssp             --EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred             --CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence              322 11100              000  1112223456899999999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=92.44  E-value=8.6  Score=37.55  Aligned_cols=28  Identities=11%  Similarity=0.235  Sum_probs=20.1

Q ss_pred             EEEecCCc-EEEEe--CceEEEEeCCCCeEE
Q 042680          198 VYLLPDGN-VYVFA--NNRSVVHDPKANKII  225 (530)
Q Consensus       198 ~~llp~G~-lfv~G--g~~~e~yDp~tn~w~  225 (530)
                      +...|||+ ||+..  +....+||..++++.
T Consensus       216 ~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~  246 (361)
T 3scy_A          216 LIFNSDGKFAYLINEIGGTVIAFRYADGMLD  246 (361)
T ss_dssp             EEECTTSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred             EEEcCCCCEEEEEcCCCCeEEEEEecCCceE
Confidence            45568997 66665  357889999888763

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=92.30  E-value=8.4  Score=37.08  Aligned_cols=27  Identities=11%  Similarity=0.133  Sum_probs=19.6

Q ss_pred             EEecCCcEEEEeC--------ceEEEEeCCCCeEE
Q 042680          199 YLLPDGNVYVFAN--------NRSVVHDPKANKII  225 (530)
Q Consensus       199 ~llp~G~lfv~Gg--------~~~e~yDp~tn~w~  225 (530)
                      ..-++|++|+...        ....+||+.+++..
T Consensus       141 ~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~  175 (333)
T 2dg1_A          141 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT  175 (333)
T ss_dssp             EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred             EECCCCCEEEEeccccccCCCceEEEEeCCCCEEE
Confidence            4557999998764        35678888877655

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=92.17  E-value=1.9  Score=42.28  Aligned_cols=108  Identities=6%  Similarity=0.007  Sum_probs=62.2

Q ss_pred             cceEEEe-cCCcEEEEeC----ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCc
Q 042680          195 YPFVYLL-PDGNVYVFAN----NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGS  269 (530)
Q Consensus       195 Yp~~~ll-p~G~lfv~Gg----~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~  269 (530)
                      ||+.+.. +||+||+..|    .....+|+.+++..+.++ ++.  +.+   +..+.+           .++++|+..-.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~--~~f---geGi~~-----------~g~~lyv~t~~   84 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDD--SYF---GEGLTL-----------LNEKLYQVVWL   84 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCT--TCC---EEEEEE-----------ETTEEEEEETT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCC--Ccc---eEEEEE-----------eCCEEEEEEec
Confidence            4555444 5699999865    578899999999886654 332  222   222211           25688887432


Q ss_pred             cCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCC-eEEEEcCCCCCCCCcccCCCCCccc
Q 042680          270 VREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNG-EVLIINGADLGSGGWHCADKPSLKP  347 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG-~VlViGG~~~g~~g~~~~~~p~~~~  347 (530)
                                       .+.+.+||+..    .+.. ..+.+.-.+-.+. +|| ++|+.+|..              ++
T Consensus        85 -----------------~~~v~viD~~t----~~v~~~i~~g~~~g~glt-~Dg~~l~vs~gs~--------------~l  128 (266)
T 2iwa_A           85 -----------------KNIGFIYDRRT----LSNIKNFTHQMKDGWGLA-TDGKILYGSDGTS--------------IL  128 (266)
T ss_dssp             -----------------CSEEEEEETTT----TEEEEEEECCSSSCCEEE-ECSSSEEEECSSS--------------EE
T ss_pred             -----------------CCEEEEEECCC----CcEEEEEECCCCCeEEEE-ECCCEEEEECCCC--------------eE
Confidence                             23467888753    2221 2222111122233 565 578777532              57


Q ss_pred             EEecCCCC
Q 042680          348 MLYRPNAP  355 (530)
Q Consensus       348 eiYDP~t~  355 (530)
                      ...||++.
T Consensus       129 ~viD~~t~  136 (266)
T 2iwa_A          129 YEIDPHTF  136 (266)
T ss_dssp             EEECTTTC
T ss_pred             EEEECCCC
Confidence            78999887

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=92.03  E-value=1.7  Score=42.64  Aligned_cols=146  Identities=14%  Similarity=0.136  Sum_probs=70.0

Q ss_pred             EecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          200 LLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       200 llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      -.|+|++++.|+  ..+.+||..++.|. .+..+.+. .. +.. .....|       +  ..+..+++|+.+ +     
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~-~~~~~~~h-~~-~v~-~~~~~~-------~--~~~~~l~s~s~D-~-----  221 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWE-CVAVLNGH-EG-TVW-SSDFDK-------T--EGVFRLCSGSDD-S-----  221 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEE-EEEEECCC-SS-CEE-EEEECC-------S--SSSCEEEEEETT-S-----
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCee-EEEEccCC-CC-cEE-EEEecC-------C--CCeeEEEEEeCC-C-----
Confidence            347999999887  46788998887664 33333321 11 000 111111       0  135677787754 1     


Q ss_pred             cccccccccCCcEEEEEcCCC----CCcceec-CCCC-ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEec
Q 042680          278 EEEKRFVNALDDCARMVVTSP----NPEWKIE-KMPA-PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYR  351 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~----~~~W~~~-~M~~-~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYD  351 (530)
                                 ++..+|+...    ...|... .++. .......+...++..++.+|.+ |            ++.+||
T Consensus       222 -----------~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~d-g------------~v~iw~  277 (330)
T 2hes_X          222 -----------TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGAD-G------------VLAVYE  277 (330)
T ss_dssp             -----------CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETT-S------------CEEEEE
T ss_pred             -----------eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCC-C------------EEEEEE
Confidence                       2334444211    1235443 3321 1111222333344466677654 1            578999


Q ss_pred             CCCCCCCceEEecCCCCCCcccc--cceecC--CCeEEEcCCCC
Q 042680          352 PNAPEGQRFAELAPTDIPRMYHS--VANLLP--DGKVFVGGSND  391 (530)
Q Consensus       352 P~t~~g~~Wt~la~~~~~R~yHS--~a~LLp--dGrVlv~GG~~  391 (530)
                      ..+.   +|..+.........+.  .....|  ||++++.||.+
T Consensus       278 ~~~~---~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D  318 (330)
T 2hes_X          278 EVDG---EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD  318 (330)
T ss_dssp             EETT---EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT
T ss_pred             cCCC---ceEEEeccccccccceEEEEEEecCCCceEEEEecCC
Confidence            8877   7765432211111101  122345  78999998853

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=91.83  E-value=17  Score=42.28  Aligned_cols=57  Identities=12%  Similarity=0.180  Sum_probs=34.6

Q ss_pred             eeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          317 VLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       317 vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      ...|||+.+++++..              .+.+||..+.   .....-.......-. ....-|||+.+++|+..
T Consensus       805 ~~s~dg~~l~~~~~~--------------~v~~~d~~~~---~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d  861 (1249)
T 3sfz_A          805 SWSADGDKIIVAAKN--------------KVLLFDIHTS---GLLAEIHTGHHSTIQ-YCDFSPYDHLAVIALSQ  861 (1249)
T ss_dssp             CBCTTSSEEEEEETT--------------EEEEEETTTC---CEEEEEECSSSSCCC-EEEECSSTTEEEEECSS
T ss_pred             EECCCCCEEEEEcCC--------------cEEEEEecCC---CceeEEcCCCCCceE-EEEEcCCCCEEEEEeCC
Confidence            445899999987632              4678998877   443221111111112 23456899999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=91.78  E-value=6.2  Score=38.73  Aligned_cols=27  Identities=4%  Similarity=-0.069  Sum_probs=19.9

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEE
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKII  225 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~  225 (530)
                      ...++|++++.|+  ....+||..+++..
T Consensus       254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  282 (425)
T 1r5m_A          254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQ  282 (425)
T ss_dssp             EEETTTTEEEEEETTSCEEEECSSSBSCS
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCCCccc
Confidence            4457898888876  35789998886544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=91.76  E-value=4.3  Score=39.08  Aligned_cols=24  Identities=4%  Similarity=-0.064  Sum_probs=18.6

Q ss_pred             EecCCcEEEEeC--ceEEEEeCCCCe
Q 042680          200 LLPDGNVYVFAN--NRSVVHDPKANK  223 (530)
Q Consensus       200 llp~G~lfv~Gg--~~~e~yDp~tn~  223 (530)
                      ..++|+.++.|+  ....+||..+++
T Consensus       169 ~~~~~~~l~~~~~dg~i~i~d~~~~~  194 (366)
T 3k26_A          169 YDLLGEKIMSCGMDHSLKLWRINSKR  194 (366)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESCSHH
T ss_pred             ECCCCCEEEEecCCCCEEEEECCCCc
Confidence            347899888886  468899998764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=91.76  E-value=14  Score=38.44  Aligned_cols=135  Identities=12%  Similarity=0.153  Sum_probs=69.7

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...+||+.++.|+.  ...+||..... .+.+..-.     .+  -.++.  ..        .+++.+++|+.+      
T Consensus       392 ~~s~dg~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~-----~~--v~~~~--~s--------~d~~~l~~~~~d------  447 (577)
T 2ymu_A          392 AFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHS-----SS--VWGVA--FS--------PDDQTIASASDD------  447 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECTTCCE-EEEEECCS-----SC--EEEEE--EC--------TTSSEEEEEETT------
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCCE-EEEecCCC-----CC--eEEEE--EC--------CCCCEEEEEcCC------
Confidence            34579998888764  57889965443 32332111     11  01111  12        257778877654      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPE  356 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~  356 (530)
                                 ..+..+|...  ..-....-.... ..++..-|||+.+++++.+.             ++.+||.... 
T Consensus       448 -----------~~v~~w~~~~--~~~~~~~~~~~~-v~~~~~spd~~~las~~~d~-------------~i~iw~~~~~-  499 (577)
T 2ymu_A          448 -----------KTVKLWNRNG--QLLQTLTGHSSS-VRGVAFSPDGQTIASASDDK-------------TVKLWNRNGQ-  499 (577)
T ss_dssp             -----------SEEEEEETTS--CEEEEEECCSSC-EEEEEECTTSCEEEEEETTS-------------EEEEEETTSC-
T ss_pred             -----------CEEEEEECCC--CEEEEEcCCCCC-EEEEEEcCCCCEEEEEeCCC-------------EEEEEcCCCC-
Confidence                       1244566431  111111111122 23344569999999987651             5788996433 


Q ss_pred             CCceEEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680          357 GQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       357 g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                        .-..+..-. .+.  .....-|||+.++.|+.
T Consensus       500 --~~~~~~~h~-~~v--~~l~~s~dg~~l~s~~~  528 (577)
T 2ymu_A          500 --LLQTLTGHS-SSV--RGVAFSPDGQTIASASD  528 (577)
T ss_dssp             --EEEEEECCS-SCE--EEEEECTTSSCEEEEET
T ss_pred             --EEEEEeCCC-CCE--EEEEEcCCCCEEEEEEC
Confidence              333332111 010  11235689999999885

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=91.76  E-value=10  Score=37.04  Aligned_cols=135  Identities=10%  Similarity=0.067  Sum_probs=67.6

Q ss_pred             ecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc
Q 042680          201 LPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE  278 (530)
Q Consensus       201 lp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~  278 (530)
                      .+++. +++|+  ....+||..+++....+..-     ..+.. ...+.           .+++.+++|+.+ +      
T Consensus       215 ~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~-----~~~i~-~~~~~-----------~~~~~l~~~~~d-~------  269 (425)
T 1r5m_A          215 VDDDK-FVIPGPKGAIFVYQITEKTPTGKLIGH-----HGPIS-VLEFN-----------DTNKLLLSASDD-G------  269 (425)
T ss_dssp             EETTE-EEEECGGGCEEEEETTCSSCSEEECCC-----SSCEE-EEEEE-----------TTTTEEEEEETT-S------
T ss_pred             cCCCE-EEEEcCCCeEEEEEcCCCceeeeeccC-----CCceE-EEEEC-----------CCCCEEEEEcCC-C------
Confidence            35655 55555  36789999887544233211     11111 11121           156677777754 1      


Q ss_pred             ccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCC
Q 042680          279 EEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQ  358 (530)
Q Consensus       279 ~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~  358 (530)
                                .+..+|.......... .-. .....+....|+| .+++++.+ |            .+.+||..+.   
T Consensus       270 ----------~i~i~d~~~~~~~~~~-~~~-~~~i~~~~~~~~~-~l~~~~~d-~------------~i~i~d~~~~---  320 (425)
T 1r5m_A          270 ----------TLRIWHGGNGNSQNCF-YGH-SQSIVSASWVGDD-KVISCSMD-G------------SVRLWSLKQN---  320 (425)
T ss_dssp             ----------CEEEECSSSBSCSEEE-CCC-SSCEEEEEEETTT-EEEEEETT-S------------EEEEEETTTT---
T ss_pred             ----------EEEEEECCCCccceEe-cCC-CccEEEEEECCCC-EEEEEeCC-C------------cEEEEECCCC---
Confidence                      2455665431111111 111 1222344556889 67777654 1            5789998776   


Q ss_pred             ceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          359 RFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       359 ~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      +-...-  ......-....+-|||+++++|+..
T Consensus       321 ~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~d  351 (425)
T 1r5m_A          321 TLLALS--IVDGVPIFAGRISQDGQKYAVAFMD  351 (425)
T ss_dssp             EEEEEE--ECTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cEeEec--ccCCccEEEEEEcCCCCEEEEEECC
Confidence            432211  1111111233456899999998853

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=91.52  E-value=3.7  Score=39.52  Aligned_cols=29  Identities=14%  Similarity=0.313  Sum_probs=22.5

Q ss_pred             Eec-CCcEEEEeCc--eEEEEeCCCCeEEEEc
Q 042680          200 LLP-DGNVYVFANN--RSVVHDPKANKIIREF  228 (530)
Q Consensus       200 llp-~G~lfv~Gg~--~~e~yDp~tn~w~~~~  228 (530)
                      ..+ ++++++.|+.  ...+||..+++....+
T Consensus       123 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  154 (366)
T 3k26_A          123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF  154 (366)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe
Confidence            346 8999998874  6889999998876544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=91.49  E-value=1.7  Score=42.83  Aligned_cols=139  Identities=16%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...++|++++.|+  ..+.+||..+++-...+..   .  ..+  -.++.+  .        .+++.+++|+.+      
T Consensus       191 ~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~---h--~~~--v~~v~~--~--------p~~~~l~s~s~d------  247 (340)
T 1got_B          191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG---H--ESD--INAICF--F--------PNGNAFATGSDD------  247 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCSEEEEECC---C--SSC--EEEEEE--C--------TTSSEEEEEETT------
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC---C--cCC--EEEEEE--c--------CCCCEEEEEcCC------
Confidence            4557999999987  4688999998875543321   1  111  112211  1        267888888764      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-CCCCc-cccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAP-RTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~-R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                 .++..+|...  .+-... ..... ....+...-|||+++++|+.+ |            .+.+||..+
T Consensus       248 -----------~~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-~------------~i~vwd~~~  301 (340)
T 1got_B          248 -----------ATCRLFDLRA--DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-F------------NCNVWDALK  301 (340)
T ss_dssp             -----------SCEEEEETTT--TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-S------------EEEEEETTT
T ss_pred             -----------CcEEEEECCC--CcEEEEEccCCcccceEEEEECCCCCEEEEECCC-C------------eEEEEEccc
Confidence                       1345667653  111111 11110 011223345899999998865 1            578999876


Q ss_pred             CCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      .  +.-..+.... .+.  .....-|||+.++.||.+
T Consensus       302 ~--~~~~~~~~h~-~~v--~~~~~s~dg~~l~s~s~D  333 (340)
T 1got_B          302 A--DRAGVLAGHD-NRV--SCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             C--CEEEEEECCS-SCE--EEEEECTTSSCEEEEETT
T ss_pred             C--cEeeEeecCC-CcE--EEEEEcCCCCEEEEEcCC
Confidence            5  1222332111 111  122346899999998854

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=91.26  E-value=3.9  Score=42.05  Aligned_cols=72  Identities=17%  Similarity=0.204  Sum_probs=41.1

Q ss_pred             cceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEe-cCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          313 MADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLY-RPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       313 ~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiY-DP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      .|.+++.-||+||..|-...|.-|.+...+ ...|..- -|...   +...++.    -.+|+.| |..||+||.-|.|.
T Consensus       287 ~hs~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~p~~v~~~~~~---~v~~va~----G~~hs~a-lt~~G~v~~wG~n~  357 (406)
T 4d9s_A          287 RHTMALTSDGKLYGWGWNKFGQVGVGNNLD-QCSPVQVRFPDDQ---KVVQVSC----GWRHTLA-VTERNNVFAWGRGT  357 (406)
T ss_dssp             SEEEEEETTSCEEEEECCTTSTTCSSSSSC-EEEEEEECCGGGC---CEEEEEE----CSSEEEE-EETTSCEEEEECCT
T ss_pred             CEEEEEcCCCeEEEeeCCCCCCCCCCCCCC-CccCEEEeccCCC---cEEEEEe----CCCeEEE-EeCCCCEEEecCCC
Confidence            577777889999999965555444322111 1122211 12222   4443332    2457655 55899999999987


Q ss_pred             CC
Q 042680          392 ND  393 (530)
Q Consensus       392 ~~  393 (530)
                      ++
T Consensus       358 ~G  359 (406)
T 4d9s_A          358 NG  359 (406)
T ss_dssp             TS
T ss_pred             CC
Confidence            65

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=91.02  E-value=5  Score=41.21  Aligned_cols=73  Identities=16%  Similarity=0.144  Sum_probs=39.7

Q ss_pred             cceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCC
Q 042680          313 MADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       313 ~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~  392 (530)
                      .|..++.-||+||..|-...|.-|.+.. .....|..-+...+  .+...++.    -.+|+. +|..||+||.-|.|..
T Consensus       235 ~ht~~l~~~G~v~~wG~n~~GqlG~g~~-~~~~~p~~v~~~~~--~~v~~i~~----G~~hs~-alt~~G~v~~wG~n~~  306 (406)
T 4d9s_A          235 RHTISVSYSGALYTYGWSKYGQLGHGDL-EDHLIPHKLEALSN--SFISQISG----GWRHTM-ALTSDGKLYGWGWNKF  306 (406)
T ss_dssp             SEEEEEETTCCEEEEECCTTSTTCSSSC-CCEEEEEECGGGTT--SCEEEEEE----CSSEEE-EEETTSCEEEEECCTT
T ss_pred             CcEEEEcCCCCEEEeeCCCCCCCCCCCC-cCccccEEecccCC--CCEEEEEe----cCCEEE-EEcCCCeEEEeeCCCC
Confidence            5677777899999999655454432211 11111221111111  12333321    235664 5568999999998865


Q ss_pred             C
Q 042680          393 D  393 (530)
Q Consensus       393 ~  393 (530)
                      +
T Consensus       307 G  307 (406)
T 4d9s_A          307 G  307 (406)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=90.94  E-value=1.7  Score=43.34  Aligned_cols=24  Identities=4%  Similarity=0.111  Sum_probs=12.6

Q ss_pred             ecCCcEEEEeC-ceEEEEeCCCCeE
Q 042680          201 LPDGNVYVFAN-NRSVVHDPKANKI  224 (530)
Q Consensus       201 lp~G~lfv~Gg-~~~e~yDp~tn~w  224 (530)
                      .++|++++.+. ..+.+||..+++-
T Consensus       103 s~d~~~l~~s~dg~v~lWd~~~~~~  127 (357)
T 4g56_B          103 VSEKGILVASDSGAVELWEILEKES  127 (357)
T ss_dssp             ETTTEEEEEETTSCEEEC-------
T ss_pred             cCCCCEEEEECCCEEEEeeccccce
Confidence            47888887665 4678899988753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=90.89  E-value=9.5  Score=38.42  Aligned_cols=25  Identities=20%  Similarity=0.187  Sum_probs=18.2

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCe
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANK  223 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~  223 (530)
                      ...++|+.++.|+.  ...+||..+++
T Consensus       237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          237 RWAPDGRHLASGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred             eecCCCCeeeeeeccccceEEeecccc
Confidence            44578898888764  57788887664

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=90.80  E-value=27  Score=40.53  Aligned_cols=148  Identities=11%  Similarity=0.086  Sum_probs=75.0

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCC--CCCCccCC--CceEeeccCCCCCCCCCCCCcEEEEecCccCC
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLP--GGARSYPA--TGTSVLLPLYLPRDTYKPVDAEVLICGGSVRE  272 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp--~~~r~yp~--~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~  272 (530)
                      ...++|+.++.|+.  ...+||..+++....+..-.  ......+.  ......+...        .+++.+++++..  
T Consensus       750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------~dg~~l~~~~~~--  819 (1249)
T 3sfz_A          750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS--------ADGDKIIVAAKN--  819 (1249)
T ss_dssp             EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC--------TTSSEEEEEETT--
T ss_pred             EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC--------CCCCEEEEEcCC--
Confidence            45679999988874  68899998886553332110  00000000  0000011111        256766665521  


Q ss_pred             ccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEec
Q 042680          273 GLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYR  351 (530)
Q Consensus       273 ~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYD  351 (530)
                                      .+..+|...  ...... .-............|+|+.+++|+.+ |            .+.+||
T Consensus       820 ----------------~v~~~d~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g------------~v~vwd  868 (1249)
T 3sfz_A          820 ----------------KVLLFDIHT--SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ-Y------------CVELWN  868 (1249)
T ss_dssp             ----------------EEEEEETTT--CCEEEEEECSSSSCCCEEEECSSTTEEEEECSS-S------------CEEEEE
T ss_pred             ----------------cEEEEEecC--CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC-C------------eEEEEE
Confidence                            245566653  222221 11122223334556899999999865 1            578999


Q ss_pred             CCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCC
Q 042680          352 PNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       352 P~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~  392 (530)
                      ..+.   +-...-....  ..-......|||+.+++|+...
T Consensus       869 ~~~~---~~~~~~~~h~--~~v~~v~~spdg~~l~s~s~dg  904 (1249)
T 3sfz_A          869 IDSR---LKVADCRGHL--SWVHGVMFSPDGSSFLTASDDQ  904 (1249)
T ss_dssp             TTTT---EEEEEECCCS--SCEEEEEECTTSSEEEEEETTS
T ss_pred             cCCC---ceeeecCCCc--cceEEEEECCCCCEEEEEeCCC
Confidence            8776   3221111111  1111234568999998888653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.65  E-value=3.4  Score=45.40  Aligned_cols=138  Identities=12%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...++|+.+++|+.  ...+||..+++....+..-.    .. ... ...   .        .+++.+++|+.+      
T Consensus        62 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~----~~-v~~-~~~---s--------~~~~~l~~~~~d------  118 (814)
T 3mkq_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP----DY-IRS-IAV---H--------PTKPYVLSGSDD------  118 (814)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS----SC-EEE-EEE---C--------SSSSEEEEEETT------
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC----CC-EEE-EEE---e--------CCCCEEEEEcCC------
Confidence            34579998888874  67899999988765443211    11 011 111   1        256667777643      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec---CCCCccccceeeeec-CCeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE---KMPAPRTMADGVLLP-NGEVLIINGADLGSGGWHCADKPSLKPMLYRP  352 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~---~M~~~R~~~~~vvLp-dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP  352 (530)
                                 ..+..+|...   .|...   .-..... .+...-| ||+.+++++.+ |            ++.+||.
T Consensus       119 -----------g~i~vw~~~~---~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~d-g------------~v~vwd~  170 (814)
T 3mkq_A          119 -----------LTVKLWNWEN---NWALEQTFEGHEHFV-MCVAFNPKDPSTFASGCLD-R------------TVKVWSL  170 (814)
T ss_dssp             -----------SEEEEEEGGG---TSEEEEEEECCSSCE-EEEEEETTEEEEEEEEETT-S------------EEEEEET
T ss_pred             -----------CEEEEEECCC---CceEEEEEcCCCCcE-EEEEEEcCCCCEEEEEeCC-C------------eEEEEEC
Confidence                       1345677652   23322   1122222 2334457 88899988765 1            5778988


Q ss_pred             CCCCCCceEEecCCCCCCcccccceecC--CCeEEEcCCCC
Q 042680          353 NAPEGQRFAELAPTDIPRMYHSVANLLP--DGKVFVGGSND  391 (530)
Q Consensus       353 ~t~~g~~Wt~la~~~~~R~yHS~a~LLp--dGrVlv~GG~~  391 (530)
                      .+... .+.....  ..+. .......|  ||+.+++|+..
T Consensus       171 ~~~~~-~~~~~~~--~~~~-v~~~~~~~~~~~~~l~~~~~d  207 (814)
T 3mkq_A          171 GQSTP-NFTLTTG--QERG-VNYVDYYPLPDKPYMITASDD  207 (814)
T ss_dssp             TCSSC-SEEEECC--CTTC-CCEEEECCSTTCCEEEEECTT
T ss_pred             CCCcc-eeEEecC--CCCC-EEEEEEEECCCCCEEEEEeCC
Confidence            66511 2222111  1111 11233345  88888888854

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=90.56  E-value=1.6  Score=43.45  Aligned_cols=135  Identities=16%  Similarity=0.182  Sum_probs=73.3

Q ss_pred             CCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccc
Q 042680          203 DGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEE  280 (530)
Q Consensus       203 ~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~  280 (530)
                      +|++++.|+  ..+.+||..+++..+.+..-     ..+. .+....           .+++.+++|+.+          
T Consensus       209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-----~~~v-~~v~~~-----------p~~~~l~s~s~D----------  261 (354)
T 2pbi_B          209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-----ESDV-NSVRYY-----------PSGDAFASGSDD----------  261 (354)
T ss_dssp             SCCEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCE-EEEEEC-----------TTSSEEEEEETT----------
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecCC-----CCCe-EEEEEe-----------CCCCEEEEEeCC----------
Confidence            678898887  46889999998876444211     1111 112222           257788888764          


Q ss_pred             ccccccCCcEEEEEcCCCCCcceec-CCCCccc-cceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCC
Q 042680          281 KRFVNALDDCARMVVTSPNPEWKIE-KMPAPRT-MADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQ  358 (530)
Q Consensus       281 ~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~-~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~  358 (530)
                             .++..+|+..  .+-... .-..... ......-|+|+++++|+.+.             ++.+||..+.  +
T Consensus       262 -------~~v~lwd~~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~-------------~i~vwd~~~~--~  317 (354)
T 2pbi_B          262 -------ATCRLYDLRA--DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY-------------TINVWDVLKG--S  317 (354)
T ss_dssp             -------SCEEEEETTT--TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-------------CEEEEETTTC--S
T ss_pred             -------CeEEEEECCC--CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCC-------------cEEEEECCCC--c
Confidence                   1355677653  211111 1111011 11223448999999988651             5789998665  1


Q ss_pred             ceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          359 RFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       359 ~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      ....+...   ...-.....-|||+.++.|+..
T Consensus       318 ~~~~l~~h---~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          318 RVSILFGH---ENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             EEEEECCC---SSCEEEEEECTTSSCEEEEETT
T ss_pred             eEEEEECC---CCcEEEEEECCCCCEEEEEcCC
Confidence            23332211   1111223456899999999854

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=90.51  E-value=2.4  Score=47.22  Aligned_cols=57  Identities=14%  Similarity=0.170  Sum_probs=33.3

Q ss_pred             CCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCC---CeEEEcCCCC
Q 042680          321 NGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPD---GKVFVGGSND  391 (530)
Q Consensus       321 dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpd---GrVlv~GG~~  391 (530)
                      ||+.+++|+.+ |            .+.+||..+.. ..+.....+......-.....-||   |+++++||..
T Consensus       169 d~~~l~sgs~d-g------------~I~iwd~~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D  228 (753)
T 3jro_A          169 ESRKFVTGGAD-N------------LVKIWKYNSDA-QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  228 (753)
T ss_dssp             GGCCEEEEETT-S------------CEEEEEEETTT-TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred             CCCEEEEEECC-C------------eEEEEeccCCc-ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence            68889988865 1            57788876651 134433322221111122345688   8999999854

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=90.26  E-value=2.7  Score=42.11  Aligned_cols=142  Identities=15%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             Eec-CCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccC-CCceEeeccCCCCCCCCCCCCc-EEEEecCccCCcc
Q 042680          200 LLP-DGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYP-ATGTSVLLPLYLPRDTYKPVDA-EVLICGGSVREGL  274 (530)
Q Consensus       200 llp-~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp-~~g~svmlpl~~~~~~~~~~~g-kI~v~GG~~~~~~  274 (530)
                      ..+ ++++++.|+.  .+.+||..+++....... +  .+.+. ..+....+...|        ++ .++++|+.+    
T Consensus        89 ~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~-~--~~~~~~h~~~v~~~~~~p--------~~~~~l~s~~~d----  153 (402)
T 2aq5_A           89 WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE-P--VITLEGHTKRVGIVAWHP--------TAQNVLLSAGCD----  153 (402)
T ss_dssp             ECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCS-C--SEEEECCSSCEEEEEECS--------SBTTEEEEEETT----
T ss_pred             eCCCCCCEEEEEeCCCeEEEEEccCCCCccccCC-c--eEEecCCCCeEEEEEECc--------CCCCEEEEEcCC----
Confidence            346 8999999874  588999988743200000 0  00000 001111111111        34 578887754    


Q ss_pred             ccccccccccccCCcEEEEEcCCCCCcceec-C-CCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680          275 YLGEEEKRFVNALDDCARMVVTSPNPEWKIE-K-MPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP  352 (530)
Q Consensus       275 ~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~-M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP  352 (530)
                                   ..+..+|+..  .+.... . -.....-.+....|||+.+++++.+ |            .+.+||+
T Consensus       154 -------------g~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~------------~i~iwd~  205 (402)
T 2aq5_A          154 -------------NVILVWDVGT--GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-K------------RVRVIEP  205 (402)
T ss_dssp             -------------SCEEEEETTT--TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-S------------EEEEEET
T ss_pred             -------------CEEEEEECCC--CCccEEEecCCCCCceEEEEECCCCCEEEEEecC-C------------cEEEEeC
Confidence                         1355677653  222211 1 1122223344556899999998864 1            5789999


Q ss_pred             CCCCCCceEE-e-cCCCCCCcccccceecCCCeEEEcCC
Q 042680          353 NAPEGQRFAE-L-APTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       353 ~t~~g~~Wt~-l-a~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      .+.   +-.. + ....-.+  -......|||+++++|.
T Consensus       206 ~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~g~  239 (402)
T 2aq5_A          206 RKG---TVVAEKDRPHEGTR--PVHAVFVSEGKILTTGF  239 (402)
T ss_dssp             TTT---EEEEEEECSSCSSS--CCEEEECSTTEEEEEEE
T ss_pred             CCC---ceeeeeccCCCCCc--ceEEEEcCCCcEEEEec
Confidence            887   4332 2 1111111  12345668999999983

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=90.11  E-value=4.1  Score=40.38  Aligned_cols=140  Identities=15%  Similarity=0.139  Sum_probs=70.7

Q ss_pred             EecCCcEEEEeCc-eEEEEeCCCCe--EEEEccCCCCCCCccCCC-ceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          200 LLPDGNVYVFANN-RSVVHDPKANK--IIREFPQLPGGARSYPAT-GTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       200 llp~G~lfv~Gg~-~~e~yDp~tn~--w~~~~p~mp~~~r~yp~~-g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      ++.+|+||+.... ...+||.++++  |...++.-.......... ......           .+++||+... +     
T Consensus        50 ~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~v~~~-~-----  112 (376)
T 3q7m_A           50 ALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-----------SGGHVYIGSE-K-----  112 (376)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-----------ETTEEEEEET-T-----
T ss_pred             EEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-----------eCCEEEEEcC-C-----
Confidence            3458999998754 78899998875  553332100000000000 111111           2677776432 1     


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                  ..+.++|+.+....|+.. .-.   .... .++.+|+||+.....              ....||+++
T Consensus       113 ------------g~l~a~d~~tG~~~W~~~~~~~---~~~~-p~~~~~~v~v~~~~g--------------~l~~~d~~t  162 (376)
T 3q7m_A          113 ------------AQVYALNTSDGTVAWQTKVAGE---ALSR-PVVSDGLVLIHTSNG--------------QLQALNEAD  162 (376)
T ss_dssp             ------------SEEEEEETTTCCEEEEEECSSC---CCSC-CEEETTEEEEECTTS--------------EEEEEETTT
T ss_pred             ------------CEEEEEECCCCCEEEEEeCCCc---eEcC-CEEECCEEEEEcCCC--------------eEEEEECCC
Confidence                        135678887655678765 211   1222 234588888744311              467899976


Q ss_pred             CCCCceEEecCCCC--CCcccccceecCCCeEEEcCC
Q 042680          355 PEGQRFAELAPTDI--PRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       355 ~~g~~Wt~la~~~~--~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      . ...|+.-.....  .|...+.  +..+|+||+...
T Consensus       163 G-~~~W~~~~~~~~~~~~~~~~~--~~~~~~v~~g~~  196 (376)
T 3q7m_A          163 G-AVKWTVNLDMPSLSLRGESAP--TTAFGAAVVGGD  196 (376)
T ss_dssp             C-CEEEEEECCC-----CCCCCC--EEETTEEEECCT
T ss_pred             C-cEEEEEeCCCCceeecCCCCc--EEECCEEEEEcC
Confidence            6 124875433222  1222222  233888888653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=89.89  E-value=9.2  Score=37.31  Aligned_cols=143  Identities=13%  Similarity=0.131  Sum_probs=74.2

Q ss_pred             ec-CCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          201 LP-DGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       201 lp-~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      .+ ++++++.|+  ....+||..+++....+. .+.  ..    ......|..        .++.++++|+.+       
T Consensus       108 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~--~~----~~~~~~~~~--------~~~~~~~~~~~~-------  165 (408)
T 4a11_B          108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEE--TV----YSHHMSPVS--------TKHCLVAVGTRG-------  165 (408)
T ss_dssp             CTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSS--CE----EEEEECSSC--------SSCCEEEEEESS-------
T ss_pred             ccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCC--ce----eeeEeecCC--------CCCcEEEEEcCC-------
Confidence            45 777888876  468899999988764442 221  11    112223321        256688887754       


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCe-EEEEcCCCCCCCCcccCCCCCcccEEecCCCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGE-VLIINGADLGSGGWHCADKPSLKPMLYRPNAPE  356 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~-VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~  356 (530)
                                ..+..+|+......... .-... ...+....|+|+ ++++|+.+ |            .+.+||..+..
T Consensus       166 ----------~~v~~~d~~~~~~~~~~-~~~~~-~v~~~~~~~~~~~ll~~~~~d-g------------~i~i~d~~~~~  220 (408)
T 4a11_B          166 ----------PKVQLCDLKSGSCSHIL-QGHRQ-EILAVSWSPRYDYILATASAD-S------------RVKLWDVRRAS  220 (408)
T ss_dssp             ----------SSEEEEESSSSCCCEEE-CCCCS-CEEEEEECSSCTTEEEEEETT-S------------CEEEEETTCSS
T ss_pred             ----------CeEEEEeCCCcceeeee-cCCCC-cEEEEEECCCCCcEEEEEcCC-C------------cEEEEECCCCC
Confidence                      13566777532111111 11111 122344568888 78888764 1            46788887652


Q ss_pred             CCceEEecC--------CCCCCcccc----cceecCCCeEEEcCCCC
Q 042680          357 GQRFAELAP--------TDIPRMYHS----VANLLPDGKVFVGGSND  391 (530)
Q Consensus       357 g~~Wt~la~--------~~~~R~yHS----~a~LLpdGrVlv~GG~~  391 (530)
                      ... ..+..        .......|.    .....|||+.+++|+..
T Consensus       221 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  266 (408)
T 4a11_B          221 GCL-ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD  266 (408)
T ss_dssp             CCS-EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccc-ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence            111 11100        000001122    23456899999988853

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=89.70  E-value=14  Score=35.01  Aligned_cols=64  Identities=14%  Similarity=0.065  Sum_probs=33.9

Q ss_pred             EEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEe--cCCCCCCCceEEecCC
Q 042680          290 CARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLY--RPNAPEGQRFAELAPT  366 (530)
Q Consensus       290 ~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiY--DP~t~~g~~Wt~la~~  366 (530)
                      +.+||+...+.+++.. ..+....-.+...-|||+.+++++...            ..+.+|  |+++.   +++.+...
T Consensus       255 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------------~~v~v~~~d~~~g---~~~~~~~~  319 (343)
T 1ri6_A          255 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS------------HHISVYEIVGEQG---LLHEKGRY  319 (343)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT------------CEEEEEEEETTTT---EEEEEEEE
T ss_pred             EEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCC------------CeEEEEEEcCCCc---eeeEcccc
Confidence            5667765323344443 222211223445568998666555321            145677  77777   77766554


Q ss_pred             CC
Q 042680          367 DI  368 (530)
Q Consensus       367 ~~  368 (530)
                      +.
T Consensus       320 ~~  321 (343)
T 1ri6_A          320 AV  321 (343)
T ss_dssp             EC
T ss_pred             cc
Confidence            44

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=89.57  E-value=17  Score=36.65  Aligned_cols=170  Identities=12%  Similarity=0.095  Sum_probs=84.8

Q ss_pred             CCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc--eE
Q 042680          138 DGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--RS  214 (530)
Q Consensus       138 dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--~~  214 (530)
                      ||+.++.|+.++ ++.+| ..++   +....+.   .                   ..-+...+..+++.++.|+.  ..
T Consensus       182 ~~~~l~sg~~dg-~i~vwd~~~~---~~~~~~~---~-------------------h~~~v~~l~~~~~~l~s~s~dg~i  235 (435)
T 1p22_A          182 DERVIITGSSDS-TVRVWDVNTG---EMLNTLI---H-------------------HCEAVLHLRFNNGMMVTCSKDRSI  235 (435)
T ss_dssp             CSSEEEEEETTS-CEEEEESSSC---CEEEEEC---C-------------------CCSCEEEEECCTTEEEEEETTSCE
T ss_pred             CCCEEEEEcCCC-eEEEEECCCC---cEEEEEc---C-------------------CCCcEEEEEEcCCEEEEeeCCCcE
Confidence            889999998764 57777 5443   1111111   0                   00122334446777777763  67


Q ss_pred             EEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEE
Q 042680          215 VVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMV  294 (530)
Q Consensus       215 e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d  294 (530)
                      .+||..+++-......+.+ . .    +....+.          .+++.+++|+.+                 ..+..+|
T Consensus       236 ~vwd~~~~~~~~~~~~~~~-~-~----~~v~~~~----------~~~~~l~s~~~d-----------------g~i~vwd  282 (435)
T 1p22_A          236 AVWDMASPTDITLRRVLVG-H-R----AAVNVVD----------FDDKYIVSASGD-----------------RTIKVWN  282 (435)
T ss_dssp             EEEECSSSSCCEEEEEECC-C-S----SCEEEEE----------EETTEEEEEETT-----------------SEEEEEE
T ss_pred             EEEeCCCCCCceeeeEecC-C-C----CcEEEEE----------eCCCEEEEEeCC-----------------CeEEEEE
Confidence            8999987653211111111 0 1    1111111          256677777654                 1345677


Q ss_pred             cCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce-EEecCCCCCCccc
Q 042680          295 VTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF-AELAPTDIPRMYH  373 (530)
Q Consensus       295 p~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W-t~la~~~~~R~yH  373 (530)
                      +..  .+-.. .+.........+. .+++.+++|+.+ |            .+.+||..+.   +- ..+....     .
T Consensus       283 ~~~--~~~~~-~~~~~~~~v~~~~-~~~~~l~~g~~d-g------------~i~iwd~~~~---~~~~~~~~h~-----~  337 (435)
T 1p22_A          283 TST--CEFVR-TLNGHKRGIACLQ-YRDRLVVSGSSD-N------------TIRLWDIECG---ACLRVLEGHE-----E  337 (435)
T ss_dssp             TTT--CCEEE-EEECCSSCEEEEE-EETTEEEEEETT-S------------CEEEEETTTC---CEEEEECCCS-----S
T ss_pred             CCc--CcEEE-EEcCCCCcEEEEE-eCCCEEEEEeCC-C------------eEEEEECCCC---CEEEEEeCCc-----C
Confidence            653  21111 1111111222343 378888888865 1            5789999876   32 2221110     1


Q ss_pred             ccceecCCCeEEEcCCCC
Q 042680          374 SVANLLPDGKVFVGGSND  391 (530)
Q Consensus       374 S~a~LLpdGrVlv~GG~~  391 (530)
                      .+..+-.|++.+++|+..
T Consensus       338 ~v~~~~~~~~~l~sg~~d  355 (435)
T 1p22_A          338 LVRCIRFDNKRIVSGAYD  355 (435)
T ss_dssp             CEEEEECCSSEEEEEETT
T ss_pred             cEEEEEecCCEEEEEeCC
Confidence            122233489999998853

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=89.54  E-value=1.9  Score=43.90  Aligned_cols=137  Identities=15%  Similarity=0.173  Sum_probs=76.2

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...|+|++++.|+.  .+.+||..+++..+.+.   +. .. +  -.++-+  .        .+++++++|+.+ +    
T Consensus       115 ~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~---~h-~~-~--V~~v~~--~--------~~~~~l~sgs~D-~----  172 (410)
T 1vyh_C          115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLK---GH-TD-S--VQDISF--D--------HSGKLLASCSAD-M----  172 (410)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEEC---CC-SS-C--EEEEEE--C--------TTSSEEEEEETT-S----
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---cc-CC-c--EEEEEE--c--------CCCCEEEEEeCC-C----
Confidence            34578999999874  68899999886543332   11 11 1  011211  1        267888888865 1    


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-CCCC-ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPA-PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~-~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                  ++..+|+..    .+.. .+.. ...-.+....|+|+.++.|+.+.             ++.+||..+
T Consensus       173 ------------~i~iwd~~~----~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~-------------~i~~wd~~~  223 (410)
T 1vyh_C          173 ------------TIKLWDFQG----FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK-------------TIKMWEVQT  223 (410)
T ss_dssp             ------------CCCEEETTS----SCEEECCCCCSSCEEEEEECSSSSEEEEEETTS-------------EEEEEETTT
T ss_pred             ------------eEEEEeCCC----CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCC-------------eEEEEECCC
Confidence                        234466542    1221 2211 11122334568999999988651             578999887


Q ss_pred             CCCCce-EEecCCCCCCcccccceecCCCeEEEcCCCCC
Q 042680          355 PEGQRF-AELAPTDIPRMYHSVANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       355 ~~g~~W-t~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~  392 (530)
                      .   +- ..+...   +..-.....-+||+++++|+...
T Consensus       224 ~---~~~~~~~~h---~~~v~~~~~~~~g~~l~s~s~D~  256 (410)
T 1vyh_C          224 G---YCVKTFTGH---REWVRMVRPNQDGTLIASCSNDQ  256 (410)
T ss_dssp             C---CEEEEEECC---SSCEEEEEECTTSSEEEEEETTS
T ss_pred             C---cEEEEEeCC---CccEEEEEECCCCCEEEEEcCCC
Confidence            6   32 222111   11111233558999999998654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=89.44  E-value=2.3  Score=40.92  Aligned_cols=28  Identities=14%  Similarity=0.191  Sum_probs=21.3

Q ss_pred             ecCCcEEEEeC--ceEEEEeCCCCeEEEEc
Q 042680          201 LPDGNVYVFAN--NRSVVHDPKANKIIREF  228 (530)
Q Consensus       201 lp~G~lfv~Gg--~~~e~yDp~tn~w~~~~  228 (530)
                      .+++++|+.++  ....+||..+++..+.+
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~   37 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSC   37 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence            35788888764  57889999999876544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=89.29  E-value=8  Score=36.71  Aligned_cols=30  Identities=10%  Similarity=-0.004  Sum_probs=22.4

Q ss_pred             ceEE-EecCCcEEEEeC--ceEEEEeCCCCeEE
Q 042680          196 PFVY-LLPDGNVYVFAN--NRSVVHDPKANKII  225 (530)
Q Consensus       196 p~~~-llp~G~lfv~Gg--~~~e~yDp~tn~w~  225 (530)
                      |... .-++|+||+...  ....+||+++++..
T Consensus        71 ~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           71 QNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             EEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             cceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            4433 347999998863  57899999888876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=89.06  E-value=20  Score=36.67  Aligned_cols=141  Identities=9%  Similarity=0.060  Sum_probs=74.5

Q ss_pred             cceEEEe-cCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccC
Q 042680          195 YPFVYLL-PDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVR  271 (530)
Q Consensus       195 Yp~~~ll-p~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~  271 (530)
                      .|+..++ ++|+||+...  ....+||+.+++....... .    ..|+  .+ +   .+       ....+|++.... 
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~----~~~~--ia-~---~~-------~g~~l~~~d~~~-  192 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-F----KGGK--PA-V---TK-------DKQRVYSIGWEG-  192 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-C----CBCB--CE-E---CT-------TSSEEEEEBSST-
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-C----CCCc--ee-E---ec-------CCCcEEEEecCC-
Confidence            4655444 7999999864  6789999999887632221 1    1221  11 1   11       134566654321 


Q ss_pred             CccccccccccccccCCcEEEEEcCCCCCcce--ec-CC-C-Cccccceeeeec-CCeEEEEcCCCCCCCCcccCCCCCc
Q 042680          272 EGLYLGEEEKRFVNALDDCARMVVTSPNPEWK--IE-KM-P-APRTMADGVLLP-NGEVLIINGADLGSGGWHCADKPSL  345 (530)
Q Consensus       272 ~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~--~~-~M-~-~~R~~~~~vvLp-dG~VlViGG~~~g~~g~~~~~~p~~  345 (530)
                                     ...+.++++.   ..|.  .. .. + ......+.++-| +|+||+... .             .
T Consensus       193 ---------------~~~I~~~d~~---~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~-------------~  240 (409)
T 3hrp_A          193 ---------------THTVYVYMKA---SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-N-------------K  240 (409)
T ss_dssp             ---------------TCEEEEEEGG---GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-T-------------C
T ss_pred             ---------------CceEEEEEcC---CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-C-------------C
Confidence                           0145667765   2333  11 11 1 222334555667 899999433 1             1


Q ss_pred             ccEEecCCCCCCCceEEecC---CCCCCcc--cccceecC-CCeEEEcCCC
Q 042680          346 KPMLYRPNAPEGQRFAELAP---TDIPRMY--HSVANLLP-DGKVFVGGSN  390 (530)
Q Consensus       346 ~~eiYDP~t~~g~~Wt~la~---~~~~R~y--HS~a~LLp-dGrVlv~GG~  390 (530)
                      .+.+||+++.   ..+.++.   ....+..  ++.+ +-| +|++|++-..
T Consensus       241 ~I~~~d~~~~---~~~~~~~~~~~g~~~~~P~~~ia-~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          241 NFGRFNVKTQ---EVTLIKQLELSGSLGTNPGPYLI-YYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEEEETTTC---CEEEEEECCCCSCCCCSSCCEEE-EETTTTEEEEEETT
T ss_pred             cEEEEECCCC---CEEEEecccccCCCCCCccccEE-EeCCCCEEEEEeCC
Confidence            5788999877   5444311   1111111  1333 447 6999998653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=89.06  E-value=12  Score=37.92  Aligned_cols=171  Identities=15%  Similarity=0.158  Sum_probs=90.3

Q ss_pred             cCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc--e
Q 042680          137 SDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--R  213 (530)
Q Consensus       137 ~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--~  213 (530)
                      .||+.++.|+.++ ++.+| ..+.   +....+.   .         +          .-+...+..+|++++.|+.  .
T Consensus       141 ~d~~~l~~g~~dg-~i~iwd~~~~---~~~~~~~---~---------h----------~~~v~~l~~~~~~l~sg~~dg~  194 (435)
T 1p22_A          141 YDDQKIVSGLRDN-TIKIWDKNTL---ECKRILT---G---------H----------TGSVLCLQYDERVIITGSSDST  194 (435)
T ss_dssp             CCSSEEEEEESSS-CEEEEESSSC---CEEEEEC---C---------C----------SSCEEEEECCSSEEEEEETTSC
T ss_pred             ECCCEEEEEeCCC-eEEEEeCCCC---eEEEEEc---C---------C----------CCcEEEEEECCCEEEEEcCCCe
Confidence            3889999998764 57777 4432   1111111   0         0          0122334459999998874  6


Q ss_pred             EEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEE
Q 042680          214 SVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARM  293 (530)
Q Consensus       214 ~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~  293 (530)
                      ..+||..+++....+..   .  .    +...-+.          ..+..+++|+.+                 ..+..+
T Consensus       195 i~vwd~~~~~~~~~~~~---h--~----~~v~~l~----------~~~~~l~s~s~d-----------------g~i~vw  238 (435)
T 1p22_A          195 VRVWDVNTGEMLNTLIH---H--C----EAVLHLR----------FNNGMMVTCSKD-----------------RSIAVW  238 (435)
T ss_dssp             EEEEESSSCCEEEEECC---C--C----SCEEEEE----------CCTTEEEEEETT-----------------SCEEEE
T ss_pred             EEEEECCCCcEEEEEcC---C--C----CcEEEEE----------EcCCEEEEeeCC-----------------CcEEEE
Confidence            88999999876644421   1  1    1111111          244567777654                 135567


Q ss_pred             EcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE-EecCCCCCCcc
Q 042680          294 VVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA-ELAPTDIPRMY  372 (530)
Q Consensus       294 dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt-~la~~~~~R~y  372 (530)
                      |............+.........+.. +|+.+++|+.+ |            .+.+||..+.   +-. .+....     
T Consensus       239 d~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~d-g------------~i~vwd~~~~---~~~~~~~~~~-----  296 (435)
T 1p22_A          239 DMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGD-R------------TIKVWNTSTC---EFVRTLNGHK-----  296 (435)
T ss_dssp             ECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETT-S------------EEEEEETTTC---CEEEEEECCS-----
T ss_pred             eCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCC-C------------eEEEEECCcC---cEEEEEcCCC-----
Confidence            76542211111111111222333444 88888888765 1            5789998876   432 221110     


Q ss_pred             cccceecCCCeEEEcCCCC
Q 042680          373 HSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       373 HS~a~LLpdGrVlv~GG~~  391 (530)
                      ..+..+-.+++.+++|+..
T Consensus       297 ~~v~~~~~~~~~l~~g~~d  315 (435)
T 1p22_A          297 RGIACLQYRDRLVVSGSSD  315 (435)
T ss_dssp             SCEEEEEEETTEEEEEETT
T ss_pred             CcEEEEEeCCCEEEEEeCC
Confidence            1122333478888888754

>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*

Probab=89.05  E-value=6.5  Score=42.42  Aligned_cols=180  Identities=18%  Similarity=0.221  Sum_probs=88.0

Q ss_pred             CCCCCcceec----CCCCccccceeeee-c-------CCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEe
Q 042680          296 TSPNPEWKIE----KMPAPRTMADGVLL-P-------NGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAEL  363 (530)
Q Consensus       296 ~~~~~~W~~~----~M~~~R~~~~~vvL-p-------dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~l  363 (530)
                      .|...+|+..    .++.+.+.++.+.+ |       ++++++++......     .+.   ...+|= ..+.|++|+..
T Consensus       244 ~DgG~tW~~~~~~~~l~~p~~~~s~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~R~---~~~l~~-S~D~G~tW~~~  314 (601)
T 1w8o_A          244 TDGGHSYGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQT-----SRS---QGTIRM-SCDDGQTWPVS  314 (601)
T ss_dssp             SSTTSCCCCCEEEEEEECSSCCCEEEESSTTCCTTCSGGGCEEEEEECCSS-----SSE---EEEEEE-ESSTTSCCCEE
T ss_pred             cCCCCCCCCCeecCcCCCCCccceEEEecccccCCCCCCCEEEEECCCCCC-----ccc---ceEEEE-eCCCCCCCCCc
Confidence            4445789763    35666665554433 2       45555555322100     000   111221 23557799864


Q ss_pred             cCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCCCcccCCCCceeccCCCCccccCCEEEE
Q 042680          364 APTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPAILEDQSDKAATYGKWVYL  443 (530)
Q Consensus       364 a~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~~~~~~~RP~i~~~~~p~~~~~g~~~~v  443 (530)
                      ..+.......+..+.++||+|+++.-..           ...+...|....|...   .-| . ... +.++..|++++|
T Consensus       315 ~~l~~~~~~Y~~l~~~~dg~i~~~ye~~-----------~~i~~~~~~~~~l~~~---~~~-~-~~~-~~~~~~g~~~~~  377 (601)
T 1w8o_A          315 KVFQPGSMSYSTLTALPDGTYGLLYEPG-----------TGIRYANFNLAWLGGI---CAP-F-TIP-DVALEPGQQVTV  377 (601)
T ss_dssp             EEEEEEECCCEEEEECTTSCEEEEECCS-----------SEEEEEEECHHHHTBC---SCC-E-ECC-CEEECTTCEEEE
T ss_pred             eEeCCCCCCCCeEEEcCCCeEEEEEecC-----------CcceEEEecHHHhccc---cCC-C-cCc-cceecCCceeEE
Confidence            3222222333445567999999885321           1345567777777543   122 2 221 455788888777


Q ss_pred             EEEcCCC--CccceEEEEEEcCCccccCCCCCcceEEeeeeeeecccCCC-ceEEEEEcCCCCCcCCCcceEEEE
Q 042680          444 RVKSSEP--LTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPG-VDEVVVAAPPTSALAPPGYYLLSV  515 (530)
Q Consensus       444 ~~~~~~~--~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g-~~~~~v~~P~~~~v~ppG~ymlfv  515 (530)
                      ++.....  ......+++|..+...|=      +- .+...    ..+.+ ...++|++|..   +.+|.|+|=+
T Consensus       378 ~~~vtn~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~----~~g~~~t~~~~vt~~~~---~~~g~y~l~~  438 (601)
T 1w8o_A          378 PVAVTNQSGIAVPKPSLQLDASPDWQV------QG-SVEPL----MPGRQAKGQVTITVPAG---TTPGRYRVGA  438 (601)
T ss_dssp             EEEEECCSSSCBSSCEEEEECCTTSEE------EE-EECCB----CTTCEEEEEEEEECCTT---CCCEEEEEEE
T ss_pred             EEEEECCCceeccCceEEEecCCCcEE------ec-ccccc----CCCCceEEEEEEecCCC---CCCCcEEeeE
Confidence            7664331  112235677665443321      11 11110    11111 12347777764   4589998743

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=89.03  E-value=21  Score=36.16  Aligned_cols=208  Identities=14%  Similarity=0.087  Sum_probs=104.3

Q ss_pred             eeEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC--CcEEEE-cCCCCCCCceEEeccccccc
Q 042680           99 CHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA--FSYEYV-PVEKESNKAAIAFPFLFETQ  175 (530)
Q Consensus        99 a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~--~s~E~y-P~~~~~~~~~~~~p~l~~t~  175 (530)
                      ....++|......+.+..-... ..+.+        --+||+.++.++.+.  ..+.+| ..++    ....+.   .. 
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~-v~~~~--------~Spdg~~la~~s~~~~~~~i~~~d~~tg----~~~~l~---~~-  221 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQP-LMSPA--------WSPDGSKLAYVTFESGRSALVIQTLANG----AVRQVA---SF-  221 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSC-EEEEE--------ECTTSSEEEEEECTTSSCEEEEEETTTC----CEEEEE---CC-
T ss_pred             ceEEEEcCCCCCCEEEeCCCCc-ceeeE--------EcCCCCEEEEEEecCCCcEEEEEECCCC----cEEEee---cC-
Confidence            3556778766555555322211 11122        245888777777654  466677 4443    111110   00 


Q ss_pred             cccCCCCCCCccccccCCccceEEEecCCcEEE-EeC----ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCC
Q 042680          176 DFLERPGNPKGRFRLENNLYPFVYLLPDGNVYV-FAN----NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLY  250 (530)
Q Consensus       176 d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv-~Gg----~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~  250 (530)
                              .        ...-.....|||+.++ .+.    ....+||..+++.. .+..-.    ..   -.++..  .
T Consensus       222 --------~--------~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~----~~---~~~~~~--s  275 (415)
T 2hqs_A          222 --------P--------RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGR----SN---NTEPTW--F  275 (415)
T ss_dssp             --------S--------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCS----SC---EEEEEE--C
T ss_pred             --------C--------CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCC----Cc---ccceEE--C
Confidence                    0        0001234468998555 442    35788899988765 443211    10   111111  1


Q ss_pred             CCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCC
Q 042680          251 LPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGA  330 (530)
Q Consensus       251 ~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~  330 (530)
                              .+++.+++++...+              ...+.++|+..  .+-...... .........-|||+.+++++.
T Consensus       276 --------pdg~~l~~~s~~~g--------------~~~i~~~d~~~--~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~  330 (415)
T 2hqs_A          276 --------PDSQNLAFTSDQAG--------------RPQVYKVNING--GAPQRITWE-GSQNQDADVSSDGKFMVMVSS  330 (415)
T ss_dssp             --------TTSSEEEEEECTTS--------------SCEEEEEETTS--SCCEECCCS-SSEEEEEEECTTSSEEEEEEE
T ss_pred             --------CCCCEEEEEECCCC--------------CcEEEEEECCC--CCEEEEecC-CCcccCeEECCCCCEEEEEEC
Confidence                    15665555443211              12456667653  222211111 122223345599998887764


Q ss_pred             CCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          331 DLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       331 ~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      ..|          ...+.+||..+.   +...+....    .......-|||+.++.++..
T Consensus       331 ~~g----------~~~i~~~d~~~~---~~~~l~~~~----~~~~~~~spdg~~l~~~s~~  374 (415)
T 2hqs_A          331 NGG----------QQHIAKQDLATG---GVQVLSSTF----LDETPSLAPNGTMVIYSSSQ  374 (415)
T ss_dssp             CSS----------CEEEEEEETTTC---CEEECCCSS----SCEEEEECTTSSEEEEEEEE
T ss_pred             cCC----------ceEEEEEECCCC---CEEEecCCC----CcCCeEEcCCCCEEEEEEcC
Confidence            321          236789999887   766554322    22234456999988887743

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=89.01  E-value=4.9  Score=40.32  Aligned_cols=139  Identities=14%  Similarity=0.198  Sum_probs=75.2

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...+||+.++.|+.  ...+||..+++....+.   +.  ..+.. +....           .+++.+++|+.+      
T Consensus       130 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~---~h--~~~v~-~~~~~-----------p~~~~l~s~s~d------  186 (393)
T 1erj_A          130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ---GH--EQDIY-SLDYF-----------PSGDKLVSGSGD------  186 (393)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CC--SSCEE-EEEEC-----------TTSSEEEEEETT------
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc---cC--CCCEE-EEEEc-----------CCCCEEEEecCC------
Confidence            34579999998874  68899999988664332   11  11111 11121           256777777754      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeec-CCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLP-NGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLp-dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                 .++..+|+..  .+.... ....  ........| ||+++++|+.+.             ++.+||..+
T Consensus       187 -----------~~v~iwd~~~--~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~s~d~-------------~v~iwd~~~  238 (393)
T 1erj_A          187 -----------RTVRIWDLRT--GQCSLTLSIED--GVTTVAVSPGDGKYIAAGSLDR-------------AVRVWDSET  238 (393)
T ss_dssp             -----------SEEEEEETTT--TEEEEEEECSS--CEEEEEECSTTCCEEEEEETTS-------------CEEEEETTT
T ss_pred             -----------CcEEEEECCC--CeeEEEEEcCC--CcEEEEEECCCCCEEEEEcCCC-------------cEEEEECCC
Confidence                       1345566653  222211 1111  122233446 899999998651             578999887


Q ss_pred             CCCCceE-EecCCCCCCcccc----cceecCCCeEEEcCCCC
Q 042680          355 PEGQRFA-ELAPTDIPRMYHS----VANLLPDGKVFVGGSND  391 (530)
Q Consensus       355 ~~g~~Wt-~la~~~~~R~yHS----~a~LLpdGrVlv~GG~~  391 (530)
                      .   +-. .+.........|.    .....|||+.++.|+..
T Consensus       239 ~---~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d  277 (393)
T 1erj_A          239 G---FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  277 (393)
T ss_dssp             C---CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             C---cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence            6   432 2211111111232    23356899999998853

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=88.94  E-value=16  Score=34.54  Aligned_cols=56  Identities=13%  Similarity=0.191  Sum_probs=31.3

Q ss_pred             eeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce-EEecCCCCCCcccccceecCCCe-EEEcCCC
Q 042680          316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF-AELAPTDIPRMYHSVANLLPDGK-VFVGGSN  390 (530)
Q Consensus       316 ~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W-t~la~~~~~R~yHS~a~LLpdGr-Vlv~GG~  390 (530)
                      .+.-++|++||.....             ..+.+|||++.   +. ..+. .+. ..-++.+ +-+||+ +||+...
T Consensus       231 i~~d~~G~l~v~~~~~-------------~~i~~~d~~~g---~~~~~~~-~~~-~~~~~i~-~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          231 MDFDEDNNLLVANWGS-------------SHIEVFGPDGG---QPKMRIR-CPF-EKPSNLH-FKPQTKTIFVTEHE  288 (314)
T ss_dssp             EEEBTTCCEEEEEETT-------------TEEEEECTTCB---SCSEEEE-CSS-SCEEEEE-ECTTSSEEEEEETT
T ss_pred             eEECCCCCEEEEEcCC-------------CEEEEEcCCCC---cEeEEEe-CCC-CCceeEE-ECCCCCEEEEEeCC
Confidence            3445799999975322             14678999854   32 2221 111 2222333 358998 8877653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=88.71  E-value=6.4  Score=37.66  Aligned_cols=23  Identities=4%  Similarity=0.159  Sum_probs=18.1

Q ss_pred             CCcEEEEeC--ceEEEEeCCCCeEE
Q 042680          203 DGNVYVFAN--NRSVVHDPKANKII  225 (530)
Q Consensus       203 ~G~lfv~Gg--~~~e~yDp~tn~w~  225 (530)
                      +|++++.|+  ..+.+||..+++|.
T Consensus        66 ~g~~l~s~s~D~~v~iWd~~~~~~~   90 (297)
T 2pm7_B           66 FGTILASCSYDGKVMIWKEENGRWS   90 (297)
T ss_dssp             GCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred             cCCEEEEEcCCCEEEEEEcCCCceE
Confidence            488998887  46889999887654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=88.69  E-value=18  Score=35.07  Aligned_cols=226  Identities=17%  Similarity=0.247  Sum_probs=108.7

Q ss_pred             eeEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccc
Q 042680           99 CHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDF  177 (530)
Q Consensus        99 a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~  177 (530)
                      .....+|+.+++..............+..       .-+||++||....+ ..+..| +...  ......+.-...    
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia-------~d~~g~l~v~d~~~-~~v~~~~~~g~--~~~~~~~~~~~~----  134 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLS-------IDTDGNYWVTDVAL-HQVFKLDPHSK--EGPLLILGRSMQ----  134 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEE-------ECTTSCEEEEETTT-TEEEEECTTCS--SCCSEEESBTTB----
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEE-------ECCCCCEEEEECCC-CEEEEEeCCCC--eEEEEEecccCC----
Confidence            35789999888765432111101111221       24588988876543 456677 5321  001111110000    


Q ss_pred             cCCCCCCCccccccCCccceEE-Eec-CCcEEEEeC---ceEEEEeCCCCeEEEEccCCCC------CCCccCCCceEee
Q 042680          178 LERPGNPKGRFRLENNLYPFVY-LLP-DGNVYVFAN---NRSVVHDPKANKIIREFPQLPG------GARSYPATGTSVL  246 (530)
Q Consensus       178 ~~~~~~~~~~~~~~~~~Yp~~~-llp-~G~lfv~Gg---~~~e~yDp~tn~w~~~~p~mp~------~~r~yp~~g~svm  246 (530)
                         ++.....     -.+|... +.+ +|+||+..+   ....+||+.... .+.+..-..      ....+|. +.++ 
T Consensus       135 ---~g~~~~~-----~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~-~~~~~~~g~~~~~~~~~~~~p~-gia~-  203 (329)
T 3fvz_A          135 ---PGSDQNH-----FCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKF-VTQWGEESSGSSPRPGQFSVPH-SLAL-  203 (329)
T ss_dssp             ---CCCSTTC-----CSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCE-EEEECEECCSSSCCTTEESCEE-EEEE-
T ss_pred             ---CCCCccc-----cCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCE-EEEeccCCCCCCCCCcccCCCc-EEEE-
Confidence               0000111     1246544 446 899999973   468899965543 324421110      0112231 2221 


Q ss_pred             ccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCC--CccccceeeeecCCe
Q 042680          247 LPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMP--APRTMADGVLLPNGE  323 (530)
Q Consensus       247 lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~--~~R~~~~~vvLpdG~  323 (530)
                      -|          ..+.|||+...+                 ..+.+||+.+  .+.... ..+  ..+.+ +...-| |.
T Consensus       204 d~----------~~g~l~v~d~~~-----------------~~I~~~~~~~--G~~~~~~~~~~~~~~~~-~~~~~p-g~  252 (329)
T 3fvz_A          204 VP----------HLDQLCVADREN-----------------GRIQCFKTDT--KEFVREIKHASFGRNVF-AISYIP-GF  252 (329)
T ss_dssp             ET----------TTTEEEEEETTT-----------------TEEEEEETTT--CCEEEEECCTTTTTCEE-EEEEET-TE
T ss_pred             EC----------CCCEEEEEECCC-----------------CEEEEEECCC--CcEEEEEeccccCCCcc-eeeecC-CE
Confidence            11          148999986432                 2467788752  343322 211  11222 223345 88


Q ss_pred             EEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEE-ecCCC-CCCcccccceecCCCeEEEcCCC
Q 042680          324 VLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAE-LAPTD-IPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       324 VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~-la~~~-~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      +++..|... .+     +....++.+||+.+.   +... +.+.. ....-++. ++-+||.|||+...
T Consensus       253 ~~~~~g~~~-v~-----~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~i-a~~~dG~lyvad~~  311 (329)
T 3fvz_A          253 LFAVNGKPY-FG-----DQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDI-VASEDGTVYIGDAH  311 (329)
T ss_dssp             EEEEECCCC-TT-----CSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEE-EECTTSEEEEEESS
T ss_pred             EEEeCCCEE-ec-----cCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEE-EECCCCCEEEEECC
Confidence            888887531 11     112336789998877   5543 32211 11222343 35689999999764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=88.62  E-value=6.6  Score=38.32  Aligned_cols=139  Identities=12%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             Eec--CCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          200 LLP--DGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       200 llp--~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      ..|  +|++++.|+.  ...+||..+++..+... ..   ...+.. .....           .+++++++|+.+     
T Consensus       133 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~---~~~~i~-~~~~~-----------pdg~~lasg~~d-----  191 (343)
T 3lrv_A          133 GHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-AK---SDVEYS-SGVLH-----------KDSLLLALYSPD-----  191 (343)
T ss_dssp             CCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-CC---SSCCCC-EEEEC-----------TTSCEEEEECTT-----
T ss_pred             cCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-cC---CCCceE-EEEEC-----------CCCCEEEEEcCC-----
Confidence            346  8899988874  67899999987653221 11   111111 22222           268899998864     


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcce-ec-CC-CCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWK-IE-KM-PAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP  352 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~-~~-~M-~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP  352 (530)
                                  ..+..+|...  .+-. .. .. .... -.+...-|||+.++.++..              ++.+||.
T Consensus       192 ------------g~i~iwd~~~--~~~~~~~~~~~h~~~-v~~l~fs~~g~~l~s~~~~--------------~v~iwd~  242 (343)
T 3lrv_A          192 ------------GILDVYNLSS--PDQASSRFPVDEEAK-IKEVKFADNGYWMVVECDQ--------------TVVCFDL  242 (343)
T ss_dssp             ------------SCEEEEESSC--TTSCCEECCCCTTSC-EEEEEECTTSSEEEEEESS--------------BEEEEET
T ss_pred             ------------CEEEEEECCC--CCCCccEEeccCCCC-EEEEEEeCCCCEEEEEeCC--------------eEEEEEc
Confidence                        2356788764  2222 11 22 2222 2233445899999988732              5789998


Q ss_pred             CCCCCCceEEecCCCCCCccc--ccceecCCCeEEEcCCC
Q 042680          353 NAPEGQRFAELAPTDIPRMYH--SVANLLPDGKVFVGGSN  390 (530)
Q Consensus       353 ~t~~g~~Wt~la~~~~~R~yH--S~a~LLpdGrVlv~GG~  390 (530)
                      .+...  ...+..........  .....-|||+.+++|+.
T Consensus       243 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          243 RKDVG--TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             TSSTT--CBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred             CCCCc--ceeecccccccccccceEEEECCCCCEEEEecC
Confidence            77611  11122111111111  12456689999999654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=88.60  E-value=21  Score=35.91  Aligned_cols=135  Identities=16%  Similarity=0.160  Sum_probs=70.8

Q ss_pred             EecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          200 LLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       200 llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      +..+|+.++.|+  ....+||..+++....+..   .  ..+  -.++.            .+++.+++|+.+       
T Consensus       245 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~--~~~--v~~~~------------~~~~~l~~~~~d-------  298 (445)
T 2ovr_B          245 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG---H--TNR--VYSLQ------------FDGIHVVSGSLD-------  298 (445)
T ss_dssp             EEECSSCEEEEETTSCEEEEEGGGTEEEEEECC---C--SSC--EEEEE------------ECSSEEEEEETT-------
T ss_pred             EEECCCEEEEEcCCCEEEEEECCCCcEeEEecC---C--CCc--eEEEE------------ECCCEEEEEeCC-------
Confidence            344888888876  3678999999876644421   1  111  11211            256677777754       


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEG  357 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g  357 (530)
                                ..+..+|.......++   +.........+. ++++.+++|+.+ |            .+.+||..+.  
T Consensus       299 ----------~~i~i~d~~~~~~~~~---~~~~~~~v~~~~-~~~~~l~~~~~d-g------------~i~vwd~~~~--  349 (445)
T 2ovr_B          299 ----------TSIRVWDVETGNCIHT---LTGHQSLTSGME-LKDNILVSGNAD-S------------TVKIWDIKTG--  349 (445)
T ss_dssp             ----------SCEEEEETTTCCEEEE---ECCCCSCEEEEE-EETTEEEEEETT-S------------CEEEEETTTC--
T ss_pred             ----------CeEEEEECCCCCEEEE---EcCCcccEEEEE-EeCCEEEEEeCC-C------------eEEEEECCCC--
Confidence                      1355677653111111   111112223333 478888888765 1            5789998765  


Q ss_pred             CceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          358 QRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       358 ~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      +....+.....  ....+..+-.+++.+++|+..
T Consensus       350 ~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~~~d  381 (445)
T 2ovr_B          350 QCLQTLQGPNK--HQSAVTCLQFNKNFVITSSDD  381 (445)
T ss_dssp             CEEEEECSTTS--CSSCEEEEEECSSEEEEEETT
T ss_pred             cEEEEEccCCC--CCCCEEEEEECCCEEEEEeCC
Confidence            12222221110  011122233488888888853

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=88.53  E-value=7  Score=37.42  Aligned_cols=24  Identities=8%  Similarity=0.055  Sum_probs=19.3

Q ss_pred             cCCcEEEEeCc--eEEEEeCCCCeEE
Q 042680          202 PDGNVYVFANN--RSVVHDPKANKII  225 (530)
Q Consensus       202 p~G~lfv~Gg~--~~e~yDp~tn~w~  225 (530)
                      ++|++++.|+.  ...+||..+.+-.
T Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~  203 (357)
T 3i2n_A          178 QEERVVCAGYDNGDIKLFDLRNMALR  203 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCEEEEEccCCeEEEEECccCcee
Confidence            79999998874  7889999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=88.48  E-value=6.8  Score=37.90  Aligned_cols=23  Identities=9%  Similarity=0.189  Sum_probs=17.8

Q ss_pred             CCcEEEEeC--ceEEEEeCCCCeEE
Q 042680          203 DGNVYVFAN--NRSVVHDPKANKII  225 (530)
Q Consensus       203 ~G~lfv~Gg--~~~e~yDp~tn~w~  225 (530)
                      +|++++.|+  ..+.+||..+++|.
T Consensus        70 ~~~~l~s~s~D~~v~iWd~~~~~~~   94 (316)
T 3bg1_A           70 YGNILASCSYDRKVIIWREENGTWE   94 (316)
T ss_dssp             GSSCEEEEETTSCEEEECCSSSCCC
T ss_pred             CCCEEEEEECCCEEEEEECCCCcce
Confidence            488888886  46889999987653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=88.37  E-value=3  Score=40.77  Aligned_cols=144  Identities=9%  Similarity=0.042  Sum_probs=72.5

Q ss_pred             EecCCcEEEEeC--ceEEEEeCCCCe-----EEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCC
Q 042680          200 LLPDGNVYVFAN--NRSVVHDPKANK-----IIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVRE  272 (530)
Q Consensus       200 llp~G~lfv~Gg--~~~e~yDp~tn~-----w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~  272 (530)
                      ..|+|++++.|+  ..+.+||.....     +. .+..+.+.  ..+.  .++-  ..        .+++.+++|+.+  
T Consensus        66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~-~~~~~~~h--~~~V--~~v~--~s--------p~g~~las~s~D--  128 (330)
T 2hes_X           66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD-LLAIIEGH--ENEV--KGVA--WS--------NDGYYLATCSRD--  128 (330)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEC-------CCCE-EEEEEC------CE--EEEE--EC--------TTSCEEEEEETT--
T ss_pred             ECCCCCEEEEEeCCCcEEEEEcccCcCccccce-eEEEEcCC--CCcE--EEEE--EC--------CCCCEEEEEeCC--
Confidence            347999998887  467889885421     11 11111211  1100  1111  11        267888888764  


Q ss_pred             ccccccccccccccCCcEEEEEcCCCCCcceec-CCCC-ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEe
Q 042680          273 GLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPA-PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLY  350 (530)
Q Consensus       273 ~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~-~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiY  350 (530)
                                     .++..+|.......++.. .+.. ...-.+...-|||++++.|+.+.             ++.+|
T Consensus       129 ---------------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-------------~i~iW  180 (330)
T 2hes_X          129 ---------------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD-------------TVRIW  180 (330)
T ss_dssp             ---------------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS-------------CEEEE
T ss_pred             ---------------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC-------------eEEEE
Confidence                           235567764322344432 2221 11112223348999999998651             57789


Q ss_pred             cCCCCCCCceEEecCCCCCCcccccceecCC--CeEEEcCCCC
Q 042680          351 RPNAPEGQRFAELAPTDIPRMYHSVANLLPD--GKVFVGGSND  391 (530)
Q Consensus       351 DP~t~~g~~Wt~la~~~~~R~yHS~a~LLpd--GrVlv~GG~~  391 (530)
                      |..+.   .|..+..+.--...-.....-|+  +..++.|+..
T Consensus       181 ~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D  220 (330)
T 2hes_X          181 KDYDD---DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD  220 (330)
T ss_dssp             EEETT---EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT
T ss_pred             ECCCC---CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC
Confidence            98877   77654433211111111234566  7778888754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=88.18  E-value=2.9  Score=41.66  Aligned_cols=30  Identities=17%  Similarity=0.221  Sum_probs=23.3

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREF  228 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~  228 (530)
                      ...+||+.++.|+.  .+.+||..+++-.+.+
T Consensus       134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~  165 (344)
T 4gqb_B          134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY  165 (344)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            34579999999874  6889999999876444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=87.88  E-value=25  Score=35.53  Aligned_cols=67  Identities=10%  Similarity=0.097  Sum_probs=33.5

Q ss_pred             eecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE-EecCCCCCCcccccceecCCCeEEEcCC
Q 042680          318 LLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA-ELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       318 vLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt-~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      --|++.++++++...+..-. ........+.+||..+.   +-. .+... ....-.+.+..-|||+++++|+
T Consensus       352 ~~~~~~~~~~~~~~d~~~~~-~~~~~~~~i~iwd~~~g---~~~~~l~~~-~~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          352 WHPRYNLIVVGRYPDPNFKS-CTPYELRTIDVFDGNSG---KMMCQLYDP-ESSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             ECSSSSCEEEECCCCTTSCC-SSTTCCCCEEEECSSSC---CEEEEECCS-SCCCCCCEEEECTTSSCEEEEC
T ss_pred             EcCCCCEEEEEEcCCCCeEE-EEecCCCEEEEEECCCC---cEEEEEeCC-CCCcEEEEEEECCCCCEEEEEc
Confidence            34678888887654221100 00011235789998876   432 22111 1111112223458999999876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=87.80  E-value=25  Score=35.44  Aligned_cols=104  Identities=6%  Similarity=0.036  Sum_probs=61.9

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...++|+.++.|+.  ...+||..+++-...+..   .  ..+  -.++  .          ..++.+++|+.+      
T Consensus       317 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h--~~~--v~~~--~----------~~~~~l~s~s~d------  371 (464)
T 3v7d_B          317 IYDHERKRCISASMDTTIRIWDLENGELMYTLQG---H--TAL--VGLL--R----------LSDKFLVSAAAD------  371 (464)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTTEEEEEECC---C--SSC--EEEE--E----------ECSSEEEEEETT------
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---C--CCc--EEEE--E----------EcCCEEEEEeCC------
Confidence            44578998888874  688999999886644421   1  111  1111  1          246778887754      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~  355 (530)
                                 ..+..+|+......+..   ...........-++|+++++|+ . |            .+.+||..+.
T Consensus       372 -----------g~v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~-d-g------------~i~iwd~~~g  422 (464)
T 3v7d_B          372 -----------GSIRGWDANDYSRKFSY---HHTNLSAITTFYVSDNILVSGS-E-N------------QFNIYNLRSG  422 (464)
T ss_dssp             -----------SEEEEEETTTCCEEEEE---ECTTCCCEEEEEECSSEEEEEE-T-T------------EEEEEETTTC
T ss_pred             -----------CcEEEEECCCCceeeee---cCCCCccEEEEEeCCCEEEEec-C-C------------eEEEEECCCC
Confidence                       13566777642222222   1222233334568999999887 3 1            5789999887

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=87.76  E-value=12  Score=35.81  Aligned_cols=147  Identities=12%  Similarity=0.142  Sum_probs=70.1

Q ss_pred             ecCCcEEEEeCc--eEEEEeCCCCe-EEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          201 LPDGNVYVFANN--RSVVHDPKANK-IIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       201 lp~G~lfv~Gg~--~~e~yDp~tn~-w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      .++|+.++.|+.  ...+||..+++ -...+....+.. ..+  -.++.+.+.      ...+++++++|+.+       
T Consensus       126 s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~--v~~~~~~~~------~~~~~~~l~~~~~d-------  189 (357)
T 3i2n_A          126 GEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN-KRD--CWTVAFGNA------YNQEERVVCAGYDN-------  189 (357)
T ss_dssp             C-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC-CCC--EEEEEEECC------CC-CCCEEEEEETT-------
T ss_pred             CCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC-CCc--eEEEEEEec------cCCCCCEEEEEccC-------
Confidence            368988888874  67899998875 222343322110 111  111111000      00267788887653       


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeec---CCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLP---NGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLp---dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                ..+..+|+......+.. ..  ...-.+....|   +|+.+++|+.+ |            .+.+||..+
T Consensus       190 ----------~~i~i~d~~~~~~~~~~-~~--~~~v~~~~~~~~~~~~~~l~~~~~d-g------------~i~i~d~~~  243 (357)
T 3i2n_A          190 ----------GDIKLFDLRNMALRWET-NI--KNGVCSLEFDRKDISMNKLVATSLE-G------------KFHVFDMRT  243 (357)
T ss_dssp             ----------SEEEEEETTTTEEEEEE-EC--SSCEEEEEESCSSSSCCEEEEEEST-T------------EEEEEEEEE
T ss_pred             ----------CeEEEEECccCceeeec-CC--CCceEEEEcCCCCCCCCEEEEECCC-C------------eEEEEeCcC
Confidence                      13556776531111111 11  11122334446   89999988754 1            567888765


Q ss_pred             CCC-CceEEecCCCCCCcccccceecCCCe-EEEcCCC
Q 042680          355 PEG-QRFAELAPTDIPRMYHSVANLLPDGK-VFVGGSN  390 (530)
Q Consensus       355 ~~g-~~Wt~la~~~~~R~yHS~a~LLpdGr-Vlv~GG~  390 (530)
                      ..- .++.......... .-.....-|||+ ++++|+.
T Consensus       244 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~  280 (357)
T 3i2n_A          244 QHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGG  280 (357)
T ss_dssp             EETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEET
T ss_pred             CCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeC
Confidence            411 1222110000111 111233568998 8888875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=87.47  E-value=15  Score=38.15  Aligned_cols=133  Identities=10%  Similarity=0.039  Sum_probs=71.9

Q ss_pred             CcEEEEeC---ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccc
Q 042680          204 GNVYVFAN---NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEE  280 (530)
Q Consensus       204 G~lfv~Gg---~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~  280 (530)
                      |+.++.|+   ....+||..+++.. . ..+.+. .. +  -.++  ...        .+++.+++|+.+          
T Consensus       456 ~~~l~~~~~~d~~i~~~~~~~~~~~-~-~~~~~~-~~-~--v~~~--~~s--------~~g~~l~~~~~d----------  509 (615)
T 1pgu_A          456 QNYVAVGLEEGNTIQVFKLSDLEVS-F-DLKTPL-RA-K--PSYI--SIS--------PSETYIAAGDVM----------  509 (615)
T ss_dssp             SSEEEEEETTTSCEEEEETTEEEEE-E-ECSSCC-SS-C--EEEE--EEC--------TTSSEEEEEETT----------
T ss_pred             CCEEEEeecCCCeEEEEECCCcccc-c-cccCCc-cC-c--eEEE--EEC--------CCCCEEEEcCCC----------
Confidence            77777765   36889999988664 1 222211 11 1  1111  112        268889998764          


Q ss_pred             ccccccCCcEEEEEcCCCCCcceec-CCC--Cccccceeeeec----------CCeEEEEcCCCCCCCCcccCCCCCccc
Q 042680          281 KRFVNALDDCARMVVTSPNPEWKIE-KMP--APRTMADGVLLP----------NGEVLIINGADLGSGGWHCADKPSLKP  347 (530)
Q Consensus       281 ~~~~~a~~s~~~~dp~~~~~~W~~~-~M~--~~R~~~~~vvLp----------dG~VlViGG~~~g~~g~~~~~~p~~~~  347 (530)
                             ..+..+|...    .+.. .+.  ....-.+....|          ||+++++++.+ |            .+
T Consensus       510 -------g~i~iw~~~~----~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d-g------------~i  565 (615)
T 1pgu_A          510 -------GKILLYDLQS----REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD-T------------NI  565 (615)
T ss_dssp             -------SCEEEEETTT----TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT-S------------CE
T ss_pred             -------CeEEEeeCCC----CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC-C------------cE
Confidence                   1255677643    2221 222  222233344557          99999999865 1            57


Q ss_pred             EEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          348 MLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       348 eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      .+||..+.. +....+.   .....-......|||+ +++||..
T Consensus       566 ~iw~~~~~~-~~~~~~~---~h~~~v~~l~~s~~~~-l~s~~~d  604 (615)
T 1pgu_A          566 FIYSVKRPM-KIIKALN---AHKDGVNNLLWETPST-LVSSGAD  604 (615)
T ss_dssp             EEEESSCTT-CCEEETT---SSTTCEEEEEEEETTE-EEEEETT
T ss_pred             EEEECCCCc-eechhhh---cCccceEEEEEcCCCC-eEEecCC
Confidence            899987751 1222221   1111111234568999 8888753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=86.63  E-value=5.2  Score=39.18  Aligned_cols=103  Identities=11%  Similarity=0.054  Sum_probs=60.3

Q ss_pred             EecCCcEEEEeCc----eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          200 LLPDGNVYVFANN----RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       200 llp~G~lfv~Gg~----~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      ...+|.||+..|.    +...+|+++++..+.++ ++.  +.+   |.++.+           .+++||+.-..+     
T Consensus        49 ~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~~--~~F---geGit~-----------~g~~ly~ltw~~-----  106 (262)
T 3nol_A           49 FYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LGK--RYF---GEGISD-----------WKDKIVGLTWKN-----  106 (262)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CCT--TCC---EEEEEE-----------ETTEEEEEESSS-----
T ss_pred             EEECCEEEEECCCCCCceEEEEECCCCcEEEEEe-cCC--ccc---eeEEEE-----------eCCEEEEEEeeC-----
Confidence            3448999999874    67899999999886664 442  233   332211           367999984322     


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCC-eEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNG-EVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG-~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                  +.+.+||+.+  -+-.. ..+.+- .+-++. +|| ++|+..|..              +...+||++
T Consensus       107 ------------~~v~v~D~~t--~~~~~-ti~~~~-eG~glt-~dg~~L~~SdGs~--------------~i~~iDp~T  155 (262)
T 3nol_A          107 ------------GLGFVWNIRN--LRQVR-SFNYDG-EGWGLT-HNDQYLIMSDGTP--------------VLRFLDPES  155 (262)
T ss_dssp             ------------SEEEEEETTT--CCEEE-EEECSS-CCCCEE-ECSSCEEECCSSS--------------EEEEECTTT
T ss_pred             ------------CEEEEEECcc--CcEEE-EEECCC-CceEEe-cCCCEEEEECCCC--------------eEEEEcCCC
Confidence                        3467788753  22111 222221 333344 455 566655522              577899998


Q ss_pred             C
Q 042680          355 P  355 (530)
Q Consensus       355 ~  355 (530)
                      .
T Consensus       156 ~  156 (262)
T 3nol_A          156 L  156 (262)
T ss_dssp             C
T ss_pred             C
Confidence            7

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=86.27  E-value=45  Score=36.88  Aligned_cols=139  Identities=9%  Similarity=0.066  Sum_probs=74.4

Q ss_pred             EecCCcEEEEeCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccc
Q 042680          200 LLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEE  279 (530)
Q Consensus       200 llp~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~  279 (530)
                      .-.+|+|++.......+||+.++++ . +...... ...+......++       .+  .+++|++... .         
T Consensus       505 ~d~~g~lWigt~~Gl~~~~~~~~~~-~-~~~~~~~-~~l~~~~i~~i~-------~d--~~g~lWigT~-~---------  562 (795)
T 4a2l_A          505 RDSHKRLWIGGEEGLSVFKQEGLDI-Q-KASILPV-SNVTKLFTNCIY-------EA--SNGIIWVGTR-E---------  562 (795)
T ss_dssp             ECTTCCEEEEESSCEEEEEEETTEE-E-ECCCSCS-CGGGGSCEEEEE-------EC--TTSCEEEEES-S---------
T ss_pred             ECCCCCEEEEeCCceEEEeCCCCeE-E-EecCCCC-CCCCCCeeEEEE-------EC--CCCCEEEEeC-C---------
Confidence            3458999988766788999999987 3 2211000 001100111111       11  2677776421 1         


Q ss_pred             cccccccCCcEEEEEcCCCCCccee---c-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680          280 EKRFVNALDDCARMVVTSPNPEWKI---E-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       280 ~~~~~~a~~s~~~~dp~~~~~~W~~---~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~  355 (530)
                               -..+||+..  .+++.   . .++....+ +.+.-.+|+|++... .              -..+|||++.
T Consensus       563 ---------Gl~~~d~~~--~~~~~~~~~~gl~~~~i~-~i~~d~~g~lWi~t~-~--------------Gl~~~~~~~~  615 (795)
T 4a2l_A          563 ---------GFYCFNEKD--KQIKRYNTTNGLPNNVVY-GILEDSFGRLWLSTN-R--------------GISCFNPETE  615 (795)
T ss_dssp             ---------CEEEEETTT--TEEEEECGGGTCSCSCEE-EEEECTTSCEEEEET-T--------------EEEEEETTTT
T ss_pred             ---------CceeECCCC--CcEEEeCCCCCCchhheE-EEEECCCCCEEEEcC-C--------------ceEEEcCCCC
Confidence                     134667652  44433   1 35443332 333335789988653 1              2468999988


Q ss_pred             CCCceEEecC---CCCCCcccccceecCCCeEEEcCCC
Q 042680          356 EGQRFAELAP---TDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       356 ~g~~Wt~la~---~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                         ++.....   ++.......+++..+||++|++|.+
T Consensus       616 ---~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~  650 (795)
T 4a2l_A          616 ---KFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGIN  650 (795)
T ss_dssp             ---EEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETT
T ss_pred             ---cEEEcCCcCCCccccCccCceeECCCCeEEEecCC
Confidence               8875432   2222222234556789999998864

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=86.13  E-value=6.9  Score=39.69  Aligned_cols=171  Identities=13%  Similarity=0.139  Sum_probs=86.4

Q ss_pred             CCccceEEEe-c-CCcEEEEe--CceEEEEeCCCCeEEEEccCCCC----CCCccCCCceEeeccCCCCCCCCCCCCcEE
Q 042680          192 NNLYPFVYLL-P-DGNVYVFA--NNRSVVHDPKANKIIREFPQLPG----GARSYPATGTSVLLPLYLPRDTYKPVDAEV  263 (530)
Q Consensus       192 ~~~Yp~~~ll-p-~G~lfv~G--g~~~e~yDp~tn~w~~~~p~mp~----~~r~yp~~g~svmlpl~~~~~~~~~~~gkI  263 (530)
                      .++||-...- . +|++|+.-  ...+..|||..+..+ .+ .+++    +.-....+|-.+ +--.        ..+++
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~-~~~~~s~~g~~~~~~sGl~~-~~~D--------~~grL   79 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-NV-VIDGASSNGDGEQQMSGLSL-LTHD--------NSKRL   79 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-EE-CCTTTCCSSCCSEEEEEEEE-SSSS--------SCCEE
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-EE-ecCCccccCCCcceeeEEEE-eccC--------CCCcE
Confidence            4677765444 2 46655543  356788999977654 33 3442    111111123222 1001        15899


Q ss_pred             EEecCccCCccccccccccccccCCcEEEEEcC---CCCCcceec-C-CCC---------ccccceeeeecCCeEEEEcC
Q 042680          264 LICGGSVREGLYLGEEEKRFVNALDDCARMVVT---SPNPEWKIE-K-MPA---------PRTMADGVLLPNGEVLIING  329 (530)
Q Consensus       264 ~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~---~~~~~W~~~-~-M~~---------~R~~~~~vvLpdG~VlViGG  329 (530)
                      +||- ....++..   .+........+.+||+.   .....|... + ...         ....-++++=++|.+||++-
T Consensus        80 ~vv~-~~~~af~~---~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s  155 (334)
T 2p9w_A           80 FAVM-KNAKSFNF---ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA  155 (334)
T ss_dssp             EEEE-EETTTTCT---TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred             EEEE-cccccccc---cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence            9972 11111110   01111234568899987   334556543 1 111         12345778889999999864


Q ss_pred             CCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          330 ADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       330 ~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      ...            ..+.++||+...-..|-.-.+....|..-.-.+..|||+.|++-.
T Consensus       156 ~~~------------~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~  203 (334)
T 2p9w_A          156 LGM------------PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG  203 (334)
T ss_dssp             ESS------------CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES
T ss_pred             CCC------------CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc
Confidence            320            146788887652234543222233344333345568997666544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=86.11  E-value=27  Score=34.12  Aligned_cols=109  Identities=8%  Similarity=0.093  Sum_probs=58.4

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcE-EEEecCccCCccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAE-VLICGGSVREGLY  275 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gk-I~v~GG~~~~~~~  275 (530)
                      ...++|+.++.|+.  ...+||....... .+..-    .. +.. .....|           +++ ++++|+.+     
T Consensus       170 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~h----~~-~v~-~~~~~~-----------~~~~~l~s~~~d-----  226 (383)
T 3ei3_B          170 DVSVSRQMLATGDSTGRLLLLGLDGHEIF-KEKLH----KA-KVT-HAEFNP-----------RCDWLMATSSVD-----  226 (383)
T ss_dssp             EEETTTTEEEEEETTSEEEEEETTSCEEE-EEECS----SS-CEE-EEEECS-----------SCTTEEEEEETT-----
T ss_pred             EECCCCCEEEEECCCCCEEEEECCCCEEE-EeccC----CC-cEE-EEEECC-----------CCCCEEEEEeCC-----
Confidence            44579999998874  6789998654433 33211    11 111 111211           455 78887754     


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeec-CCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLP-NGEVLIINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLp-dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                                  ..+..+|+......-... .+.....-.+...-| ||+.+++++.+.             .+.+||..
T Consensus       227 ------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~-------------~i~iwd~~  281 (383)
T 3ei3_B          227 ------------ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRN-------------EIRVYSSY  281 (383)
T ss_dssp             ------------SEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSS-------------EEEEEETT
T ss_pred             ------------CEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCC-------------cEEEEECC
Confidence                        135567765321111111 122222223334458 999999988641             57788877


Q ss_pred             CC
Q 042680          354 AP  355 (530)
Q Consensus       354 t~  355 (530)
                      +.
T Consensus       282 ~~  283 (383)
T 3ei3_B          282 DW  283 (383)
T ss_dssp             BT
T ss_pred             CC
Confidence            65

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=86.09  E-value=3.9  Score=40.98  Aligned_cols=139  Identities=9%  Similarity=0.003  Sum_probs=72.5

Q ss_pred             EecCCcEEEEeCc--eEEEEeCCCCeEEEEccC--CCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          200 LLPDGNVYVFANN--RSVVHDPKANKIIREFPQ--LPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       200 llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~--mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      ..+++++++.++.  ...+||..+++..+..+.  +.+ ....   -.++.++          .++++|+.|+.+     
T Consensus       130 ~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~-~~~~---v~~~~~~----------~~~~~~~s~~~d-----  190 (433)
T 3bws_A          130 FIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKK-KLGF---VETISIP----------EHNELWVSQMQA-----  190 (433)
T ss_dssp             ESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHT-TCCE---EEEEEEG----------GGTEEEEEEGGG-----
T ss_pred             EeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccc-cCCc---eeEEEEc----------CCCEEEEEECCC-----
Confidence            4568899998864  489999999987643321  000 0000   0111111          268888887753     


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEE-EEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVL-IINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~Vl-ViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                  ..+.++|+......++. ...... -.....-|||+.+ +.++.. +            .+.+||+.+
T Consensus       191 ------------~~v~~~d~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~-~------------~i~~~d~~~  243 (433)
T 3bws_A          191 ------------NAVHVFDLKTLAYKATV-DLTGKW-SKILLYDPIRDLVYCSNWIS-E------------DISVIDRKT  243 (433)
T ss_dssp             ------------TEEEEEETTTCCEEEEE-ECSSSS-EEEEEEETTTTEEEEEETTT-T------------EEEEEETTT
T ss_pred             ------------CEEEEEECCCceEEEEE-cCCCCC-eeEEEEcCCCCEEEEEecCC-C------------cEEEEECCC
Confidence                        23567777531111222 111111 2233445888765 444332 1            578999987


Q ss_pred             CCCCceEEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680          355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      .   +....-+  ....-+ ...+-|||+.+++++.
T Consensus       244 ~---~~~~~~~--~~~~~~-~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          244 K---LEIRKTD--KIGLPR-GLLLSKDGKELYIAQF  273 (433)
T ss_dssp             T---EEEEECC--CCSEEE-EEEECTTSSEEEEEEE
T ss_pred             C---cEEEEec--CCCCce-EEEEcCCCCEEEEEEC
Confidence            7   5433211  111122 2345689977666653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=85.68  E-value=13  Score=35.58  Aligned_cols=27  Identities=11%  Similarity=0.055  Sum_probs=22.6

Q ss_pred             EEecCCcEEEEeCceEEEEeCCCCeEE
Q 042680          199 YLLPDGNVYVFANNRSVVHDPKANKII  225 (530)
Q Consensus       199 ~llp~G~lfv~Gg~~~e~yDp~tn~w~  225 (530)
                      ...++|+|++..+....+||+.++++.
T Consensus        60 ~~~~dG~l~v~~~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           60 ALRQSGGYVATIGTKFCALNWKEQSAV   86 (297)
T ss_dssp             EEBTTSSEEEEETTEEEEEETTTTEEE
T ss_pred             EECCCCCEEEEECCeEEEEECCCCcEE
Confidence            445799988888788899999999876

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=85.65  E-value=16  Score=35.22  Aligned_cols=30  Identities=20%  Similarity=0.234  Sum_probs=23.2

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREF  228 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~  228 (530)
                      ...++|+.++.|+  ..+.+||..+++-.+.+
T Consensus        72 ~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~  103 (319)
T 3frx_A           72 TLTADGAYALSASWDKTLRLWDVATGETYQRF  103 (319)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCeeEEE
Confidence            4557999999887  46889999999865444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=85.42  E-value=31  Score=34.22  Aligned_cols=200  Identities=15%  Similarity=0.111  Sum_probs=99.9

Q ss_pred             eEEEEeCCCCcEEEccccC-CcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccc
Q 042680          100 HSIFYDYNKNAVKALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDF  177 (530)
Q Consensus       100 ~~~~yDp~t~~w~~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~  177 (530)
                      ...+||..+++...+.... .....+.+        ..+||+.+++|+.++ .+.+| ..+.   +....+..  .    
T Consensus       114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~--------~s~~~~~l~~~~~dg-~i~iwd~~~~---~~~~~~~~--~----  175 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETDESTYVASVK--------WSHDGSFLSVGLGNG-LVDIYDVESQ---TKLRTMAG--H----  175 (401)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCCEEEEE--------ECTTSSEEEEEETTS-CEEEEETTTC---CEEEEECC--C----
T ss_pred             eEEEeeCCCCcEeEeeecCCCCCEEEEE--------ECCCCCEEEEECCCC-eEEEEECcCC---eEEEEecC--C----
Confidence            3568888888766554332 11111122        345888988888764 57777 5432   11111110  0    


Q ss_pred             cCCCCCCCccccccCCccceEEEecCCcEEEEeCc--eEEEEeCCC-CeEEEEccCCCCCCCccCCCceEeeccCCCCCC
Q 042680          178 LERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--RSVVHDPKA-NKIIREFPQLPGGARSYPATGTSVLLPLYLPRD  254 (530)
Q Consensus       178 ~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--~~e~yDp~t-n~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~  254 (530)
                                      -.+...+..++++++.|+.  ...+||..+ +.-...+..-     ..+..+ ....       
T Consensus       176 ----------------~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~v~~-~~~~-------  226 (401)
T 4aez_A          176 ----------------QARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH-----SSEVCG-LAWR-------  226 (401)
T ss_dssp             ----------------SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC-----SSCEEE-EEEC-------
T ss_pred             ----------------CCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC-----CCCeeE-EEEc-------
Confidence                            0112233448888888874  678899984 3322222211     111111 1111       


Q ss_pred             CCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCC-eEEEEcCCCCC
Q 042680          255 TYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNG-EVLIINGADLG  333 (530)
Q Consensus       255 ~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG-~VlViGG~~~g  333 (530)
                          .+++.+++|+.+                 ..+..+|...........  .....-.+....|+| .++++||... 
T Consensus       227 ----~~~~~l~s~~~d-----------------~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~ll~~~~gs~-  282 (401)
T 4aez_A          227 ----SDGLQLASGGND-----------------NVVQIWDARSSIPKFTKT--NHNAAVKAVAWCPWQSNLLATGGGTM-  282 (401)
T ss_dssp             ----TTSSEEEEEETT-----------------SCEEEEETTCSSEEEEEC--CCSSCCCEEEECTTSTTEEEEECCTT-
T ss_pred             ----CCCCEEEEEeCC-----------------CeEEEccCCCCCccEEec--CCcceEEEEEECCCCCCEEEEecCCC-
Confidence                267888888754                 135667765311111111  111222333445755 6777775211 


Q ss_pred             CCCcccCCCCCcccEEecCCCCCCCceE-EecCCCCCCcccccceecCCCeEEEc
Q 042680          334 SGGWHCADKPSLKPMLYRPNAPEGQRFA-ELAPTDIPRMYHSVANLLPDGKVFVG  387 (530)
Q Consensus       334 ~~g~~~~~~p~~~~eiYDP~t~~g~~Wt-~la~~~~~R~yHS~a~LLpdGrVlv~  387 (530)
                                -..+.+||..+.   +-. .+..   .. .-.....-|||+.+++
T Consensus       283 ----------d~~i~i~d~~~~---~~~~~~~~---~~-~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          283 ----------DKQIHFWNAATG---ARVNTVDA---GS-QVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             ----------TCEEEEEETTTC---CEEEEEEC---SS-CEEEEEECSSSSEEEE
T ss_pred             ----------CCEEEEEECCCC---CEEEEEeC---CC-cEEEEEECCCCCeEEE
Confidence                      015789998776   332 2211   11 1123345689998888

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=85.21  E-value=28  Score=33.50  Aligned_cols=136  Identities=13%  Similarity=0.114  Sum_probs=66.6

Q ss_pred             CCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccc
Q 042680          203 DGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEE  280 (530)
Q Consensus       203 ~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~  280 (530)
                      ++.+++.|+.  ...+||..+.+....+.   +.  ..+... ...   .        .+++.+++||.+ +        
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~h--~~~v~~-~~~---s--------p~g~~l~s~~~d-g--------  218 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQFQIEADFI---GH--NSNINT-LTA---S--------PDGTLIASAGKD-G--------  218 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTTTEEEEEEC---CC--CSCEEE-EEE---C--------TTSSEEEEEETT-C--------
T ss_pred             CccEEEEEeCCCEEEEEECCcchhheeec---CC--CCcEEE-EEE---c--------CCCCEEEEEeCC-C--------
Confidence            4557777763  57899999887653332   11  111111 111   1        268888888865 1        


Q ss_pred             ccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce
Q 042680          281 KRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF  360 (530)
Q Consensus       281 ~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W  360 (530)
                              .+..+|........+. ... .. ..+...-|||+.++.+...              ...+|+....  ..+
T Consensus       219 --------~i~iwd~~~~~~~~~~-~~~-~~-v~~~~~sp~~~~la~~~~~--------------~i~v~~~~~~--~~~  271 (319)
T 3frx_A          219 --------EIMLWNLAAKKAMYTL-SAQ-DE-VFSLAFSPNRYWLAAATAT--------------GIKVFSLDPQ--YLV  271 (319)
T ss_dssp             --------EEEEEETTTTEEEEEE-ECC-SC-EEEEEECSSSSEEEEEETT--------------EEEEEEETTE--EEE
T ss_pred             --------eEEEEECCCCcEEEEe-cCC-Cc-EEEEEEcCCCCEEEEEcCC--------------CcEEEEeCcC--eee
Confidence                    2455665431111111 111 11 2234456899988876532              2455655443  012


Q ss_pred             EEecCCCCC-Ccccc----cceecCCCeEEEcCCCC
Q 042680          361 AELAPTDIP-RMYHS----VANLLPDGKVFVGGSND  391 (530)
Q Consensus       361 t~la~~~~~-R~yHS----~a~LLpdGrVlv~GG~~  391 (530)
                      ..+.+.... ...|.    ....-|||+.+++|+..
T Consensus       272 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D  307 (319)
T 3frx_A          272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD  307 (319)
T ss_dssp             EEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred             eccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence            222211100 00111    23356899999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=85.12  E-value=43  Score=35.65  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=23.2

Q ss_pred             EecCCcEEEEeC--ceEEEEeCCCCeEEEEc
Q 042680          200 LLPDGNVYVFAN--NRSVVHDPKANKIIREF  228 (530)
Q Consensus       200 llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~  228 (530)
                      ..|||+.++.|+  ..+.+||..+++..+.+
T Consensus       247 ~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~  277 (611)
T 1nr0_A          247 WSPDGTKIASASADKTIKIWNVATLKVEKTI  277 (611)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence            457999999887  46899999999877554

>3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A*

Probab=85.08  E-value=5.1  Score=40.87  Aligned_cols=172  Identities=15%  Similarity=0.151  Sum_probs=80.8

Q ss_pred             CCccceEEEecCCcEEEEe--------CceEEEEeC--CCCeEEEEccCCCCCCCccCC--CceEeeccCCCCCCCCCCC
Q 042680          192 NNLYPFVYLLPDGNVYVFA--------NNRSVVHDP--KANKIIREFPQLPGGARSYPA--TGTSVLLPLYLPRDTYKPV  259 (530)
Q Consensus       192 ~~~Yp~~~llp~G~lfv~G--------g~~~e~yDp--~tn~w~~~~p~mp~~~r~yp~--~g~svmlpl~~~~~~~~~~  259 (530)
                      ...||..+.++||.|++..        +....+|--  ...+|. ++..++.....+..  ..+...+|-..    ....
T Consensus        22 ~~~yp~~v~L~dG~lLa~~~~~~~~~~~~~~~v~rS~DgG~TW~-~~~~v~~~~~g~~~~~~P~l~~lp~~v----~~~~   96 (355)
T 3a72_A           22 RTLYPRNEQLPNGDLLATWENYSPEPPAVYFPIYRSKDHGKTWN-EISRVHDTVNGYGLRYQPFLYSLPERV----GSFK   96 (355)
T ss_dssp             SEEEEEEEECTTSCEEEEEEECCCSSSCCCEEEEEESSTTSCCE-EEEEECCTTTSSCEEEEEEEEECSSCB----TTBC
T ss_pred             CCccceEEEcCCCCEEEEEEeecCCCCCceEEEEEEcCCCcCcC-CCcccCCCcCCcccccCCcEEecCccc----ccCC
Confidence            4578999999999999863        122333322  235687 33322211111100  01122233100    0012


Q ss_pred             CcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-C-----CCCcc-----ccceeeeecCCeEEEEc
Q 042680          260 DAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-K-----MPAPR-----TMADGVLLPNGEVLIIN  328 (530)
Q Consensus       260 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~-----M~~~R-----~~~~~vvLpdG~VlViG  328 (530)
                      +|+|+.+|-.. ...          .....+..+.-+|...+|+.. .     ++.++     +....+.+.+|++++.-
T Consensus        97 ~G~ll~~~~~~-~~d----------~~~~~~~v~~S~D~G~TW~~~~~i~~~~~~~~~~g~~~v~eP~~~~~~G~l~~~~  165 (355)
T 3a72_A           97 KGTLLLAGSSI-PTD----------LSSTDIVLYASQDDGMTWDFVSHIAAGGEARPNNGLTPVWEPFLLANKGKLICYY  165 (355)
T ss_dssp             TTCEEEEEEEC-CTT----------CCCEEEEEEEESSTTSCCEEEEEEEEESCSSCCTTCCCEEEEEEEEETTEEEEEE
T ss_pred             CCcEEEEEeee-cCC----------CCCceEEEEEECCCCccCccCccccccCccccccCCCccccceEEccCCeEEEEE
Confidence            68888874221 000          001123344445667889864 3     22221     11114567899998876


Q ss_pred             CCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCC-----CCcccccceecCCCeEEEc
Q 042680          329 GADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDI-----PRMYHSVANLLPDGKVFVG  387 (530)
Q Consensus       329 G~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~-----~R~yHS~a~LLpdGrVlv~  387 (530)
                      ...++...       ..+....--.++ |++|+.......     .|.....++-|+||+++++
T Consensus       166 ~~~~~~~~-------~~~~~~~~~S~D-G~TWs~~~~~~~~~~~~~rpg~p~v~~l~dG~l~l~  221 (355)
T 3a72_A          166 SDQRDNAT-------YGQTMVHQVTND-LKNWGPVVEDVTYPTYTDRPGMPVVTKLPNGQYFYV  221 (355)
T ss_dssp             EECCCTTT-------CSCEEEEEEESS-SSSCCCCEEEECCSSTTCEEEEEEEEECTTSCEEEE
T ss_pred             CCCCCCCC-------CCcEEEEEECCC-CCCCCCCeeccccCccCCCCCceEEEECCCCCEEEE
Confidence            43221000       011122222345 779975433211     2333445677899998776

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=84.66  E-value=4.8  Score=39.00  Aligned_cols=108  Identities=13%  Similarity=0.069  Sum_probs=58.3

Q ss_pred             ecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeec-cCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          201 LPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLL-PLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       201 lp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svml-pl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      .++|+.++.|+  ..+.+||..+++.. .+..+.+.  ..+.  .++.+ |.         .++++++.|+.+       
T Consensus        22 s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH--~~~V--~~v~~~~~---------~~~~~l~s~s~D-------   80 (316)
T 3bg1_A           22 DYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGH--EGPV--WQVAWAHP---------MYGNILASCSYD-------   80 (316)
T ss_dssp             CGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECC--SSCE--EEEEECCG---------GGSSCEEEEETT-------
T ss_pred             cCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCC--CccE--EEEEeCCC---------CCCCEEEEEECC-------
Confidence            47899999887  46889999887542 22222221  1111  11211 10         136788888764       


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceec-CC--CCccccceeeeecC--CeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIE-KM--PAPRTMADGVLLPN--GEVLIINGADLGSGGWHCADKPSLKPMLYRP  352 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M--~~~R~~~~~vvLpd--G~VlViGG~~~g~~g~~~~~~p~~~~eiYDP  352 (530)
                                .++..+|+..  .+|+.. .+  ....+. +...-|+  |++++.|+.+.             ++.+||.
T Consensus        81 ----------~~v~iWd~~~--~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~lasgs~D~-------------~i~lwd~  134 (316)
T 3bg1_A           81 ----------RKVIIWREEN--GTWEKSHEHAGHDSSVN-SVCWAPHDYGLILACGSSDG-------------AISLLTY  134 (316)
T ss_dssp             ----------SCEEEECCSS--SCCCEEEEECCCSSCCC-EEEECCTTTCSCEEEECSSS-------------CEEEEEE
T ss_pred             ----------CEEEEEECCC--CcceEEEEccCCCCceE-EEEECCCCCCcEEEEEcCCC-------------CEEEEec
Confidence                      2355667653  445432 22  222222 2233466  88999888651             4677887


Q ss_pred             CCC
Q 042680          353 NAP  355 (530)
Q Consensus       353 ~t~  355 (530)
                      .+.
T Consensus       135 ~~~  137 (316)
T 3bg1_A          135 TGE  137 (316)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=84.40  E-value=31  Score=33.37  Aligned_cols=27  Identities=11%  Similarity=-0.078  Sum_probs=21.4

Q ss_pred             EEEecCCcEEEEeCc--eEEEEeCCCCeE
Q 042680          198 VYLLPDGNVYVFANN--RSVVHDPKANKI  224 (530)
Q Consensus       198 ~~llp~G~lfv~Gg~--~~e~yDp~tn~w  224 (530)
                      +...|||++++.|+.  ...+||.++++.
T Consensus       176 ~~~~pdg~~lasg~~dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          176 GVLHKDSLLLALYSPDGILDVYNLSSPDQ  204 (343)
T ss_dssp             EEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred             EEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence            345689999999874  688999998763

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=84.04  E-value=18  Score=35.49  Aligned_cols=146  Identities=11%  Similarity=0.147  Sum_probs=76.4

Q ss_pred             EEecC-CcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCC--ccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCc
Q 042680          199 YLLPD-GNVYVFANN--RSVVHDPKANKIIREFPQLPGGAR--SYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREG  273 (530)
Q Consensus       199 ~llp~-G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r--~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~  273 (530)
                      ...++ +++++.|+.  ...+||..+++....+.. +....  ..+.. .....|          .+.+++++|+.+.. 
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~v~-~~~~~~----------~~~~~l~~~~~d~~-  238 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY-TSPNSGIKQQLS-VVEWHP----------KNSTRVATATGSDN-  238 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC-CCCSSCCCCCEE-EEEECS----------SCTTEEEEEECCSS-
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec-cccccccCCceE-EEEECC----------CCCCEEEEEECCCC-
Confidence            34566 789998874  588999999887644432 11000  11111 112211          12367777765411 


Q ss_pred             cccccccccccccCCcEEEEEcCCCCCcceecCCC--Cccccceeeeec-CCeEEEEcCCCCCCCCcccCCCCCcccEEe
Q 042680          274 LYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMP--APRTMADGVLLP-NGEVLIINGADLGSGGWHCADKPSLKPMLY  350 (530)
Q Consensus       274 ~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~--~~R~~~~~vvLp-dG~VlViGG~~~g~~g~~~~~~p~~~~eiY  350 (530)
                                   ...+..||+...  .-....+.  ......+...-| ||+++++++.+ |            ++.+|
T Consensus       239 -------------~~~i~~~d~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-g------------~v~~w  290 (416)
T 2pm9_A          239 -------------DPSILIWDLRNA--NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-N------------TVLLW  290 (416)
T ss_dssp             -------------SCCCCEEETTST--TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-S------------EEEEE
T ss_pred             -------------CceEEEEeCCCC--CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC-C------------CEEEe
Confidence                         113456787631  11111222  222222333446 89999999865 1            57899


Q ss_pred             cCCCCCCCce-EEecCCCCCCcccccceecCCC-eEEEcCCCC
Q 042680          351 RPNAPEGQRF-AELAPTDIPRMYHSVANLLPDG-KVFVGGSND  391 (530)
Q Consensus       351 DP~t~~g~~W-t~la~~~~~R~yHS~a~LLpdG-rVlv~GG~~  391 (530)
                      |..+.   +- ..+....   ..-.....-||| +++++|+..
T Consensus       291 d~~~~---~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~d  327 (416)
T 2pm9_A          291 NPESA---EQLSQFPARG---NWCFKTKFAPEAPDLFACASFD  327 (416)
T ss_dssp             CSSSC---CEEEEEECSS---SCCCCEEECTTCTTEEEECCSS
T ss_pred             eCCCC---ccceeecCCC---CceEEEEECCCCCCEEEEEecC
Confidence            98776   32 2222111   111223456898 899998853

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=83.59  E-value=36  Score=33.57  Aligned_cols=116  Identities=15%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             EEEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCC-CCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcc
Q 042680          198 VYLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGG-ARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGL  274 (530)
Q Consensus       198 ~~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~-~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~  274 (530)
                      +...|+|+.++.|+.  ...+||..+++-.+.+..-+.. ....+...+.+.-           .+++++++|+.+ +  
T Consensus       255 v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----------~~g~~l~~g~~d-g--  320 (380)
T 3iz6_a          255 VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS-----------ISGRLLFAGYSN-G--  320 (380)
T ss_dssp             EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC-----------SSSSEEEEECTT-S--
T ss_pred             EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC-----------CCCCEEEEEECC-C--
Confidence            345689999999985  6889999998765433221110 0011111112211           268888888764 1  


Q ss_pred             ccccccccccccCCcEEEEEcCCCCCcceecCC---CCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEec
Q 042680          275 YLGEEEKRFVNALDDCARMVVTSPNPEWKIEKM---PAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYR  351 (530)
Q Consensus       275 ~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M---~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYD  351 (530)
                                    .+..+|............+   ...+.. +...-|||+.++.|+.+.             ++.+||
T Consensus       321 --------------~i~vwd~~~~~~~~~~~~~~~~h~~~v~-~l~~s~dg~~l~sgs~D~-------------~i~iW~  372 (380)
T 3iz6_a          321 --------------DCYVWDTLLAEMVLNLGTLQNSHEGRIS-CLGLSSDGSALCTGSWDK-------------NLKIWA  372 (380)
T ss_dssp             --------------CEEEEETTTCCEEEEECCSCSSCCCCCC-EEEECSSSSEEEEECTTS-------------CEEEEE
T ss_pred             --------------CEEEEECCCCceEEEEecccCCCCCceE-EEEECCCCCEEEEeeCCC-------------CEEEEe
Confidence                          3556776431111111111   223333 233458999999998761             467777


Q ss_pred             CCCC
Q 042680          352 PNAP  355 (530)
Q Consensus       352 P~t~  355 (530)
                      ....
T Consensus       373 ~~~~  376 (380)
T 3iz6_a          373 FSGH  376 (380)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            6543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=83.20  E-value=10  Score=36.60  Aligned_cols=105  Identities=9%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             EEEecCCcEEEEeCc----eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCc
Q 042680          198 VYLLPDGNVYVFANN----RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREG  273 (530)
Q Consensus       198 ~~llp~G~lfv~Gg~----~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~  273 (530)
                      .....+|.||+..|.    +...+|+++++..+.+ +++.  +.+   |.++.+           .+++||++...+   
T Consensus        25 GL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~--~~f---geGi~~-----------~~~~ly~ltw~~---   84 (243)
T 3mbr_X           25 GLFYLRGHLYESTGETGRSSVRKVDLETGRILQRA-EVPP--PYF---GAGIVA-----------WRDRLIQLTWRN---   84 (243)
T ss_dssp             EEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCT--TCC---EEEEEE-----------ETTEEEEEESSS---
T ss_pred             cEEEECCEEEEECCCCCCceEEEEECCCCCEEEEE-eCCC--Ccc---eeEEEE-----------eCCEEEEEEeeC---
Confidence            344557899999775    6789999999988655 3442  222   333211           368999984322   


Q ss_pred             cccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680          274 LYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP  352 (530)
Q Consensus       274 ~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP  352 (530)
                                    ..+.+||+.+    .+.. ..+.+- .+-++.-.++++|+..|..              +...+||
T Consensus        85 --------------~~v~v~D~~t----l~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~--------------~l~~iDp  131 (243)
T 3mbr_X           85 --------------HEGFVYDLAT----LTPRARFRYPG-EGWALTSDDSHLYMSDGTA--------------VIRKLDP  131 (243)
T ss_dssp             --------------SEEEEEETTT----TEEEEEEECSS-CCCEEEECSSCEEEECSSS--------------EEEEECT
T ss_pred             --------------CEEEEEECCc----CcEEEEEeCCC-CceEEeeCCCEEEEECCCC--------------eEEEEeC
Confidence                          3467788753    2322 222222 3333443344677777632              5778999


Q ss_pred             CCC
Q 042680          353 NAP  355 (530)
Q Consensus       353 ~t~  355 (530)
                      ++.
T Consensus       132 ~t~  134 (243)
T 3mbr_X          132 DTL  134 (243)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            987

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=82.49  E-value=32  Score=32.08  Aligned_cols=20  Identities=10%  Similarity=0.152  Sum_probs=16.0

Q ss_pred             CCcEEEEeCc--eEEEEeCCCC
Q 042680          203 DGNVYVFANN--RSVVHDPKAN  222 (530)
Q Consensus       203 ~G~lfv~Gg~--~~e~yDp~tn  222 (530)
                      ||++++.|+.  ...+||..++
T Consensus        70 d~~~l~s~~~dg~v~vwd~~~~   91 (351)
T 3f3f_A           70 YGRIIASASYDKTVKLWEEDPD   91 (351)
T ss_dssp             GCSEEEEEETTSCEEEEEECTT
T ss_pred             CCCEEEEEcCCCeEEEEecCCC
Confidence            5888888874  5789999875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=81.90  E-value=14  Score=39.46  Aligned_cols=145  Identities=12%  Similarity=0.121  Sum_probs=74.6

Q ss_pred             EecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          200 LLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       200 llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      ..|||++++.|+  ..+.+||..+++....+..-.  .+.....+...-+...        .+++.+++|+.+       
T Consensus       198 fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~--~~~~~h~~~V~~v~~s--------pdg~~l~s~s~D-------  260 (611)
T 1nr0_A          198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--LKNVAHSGSVFGLTWS--------PDGTKIASASAD-------  260 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--SSSCSSSSCEEEEEEC--------TTSSEEEEEETT-------
T ss_pred             ECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc--ccccccCCCEEEEEEC--------CCCCEEEEEeCC-------
Confidence            457999999887  468899999887664442100  0010111111111112        267888888764       


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceec-CCCCc-cccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAP-RTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~-R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~  355 (530)
                                .++..+|+..  .+.... .+... ......+. .+++.++.++.+ |            ...+||+.+.
T Consensus       261 ----------~~v~lWd~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~d-~------------~i~~~~~~~~  314 (611)
T 1nr0_A          261 ----------KTIKIWNVAT--LKVEKTIPVGTRIEDQQLGII-WTKQALVSISAN-G------------FINFVNPELG  314 (611)
T ss_dssp             ----------SEEEEEETTT--TEEEEEEECCSSGGGCEEEEE-ECSSCEEEEETT-C------------CEEEEETTTT
T ss_pred             ----------CeEEEEeCCC--CceeeeecCCCCccceeEEEE-EcCCEEEEEeCC-C------------cEEEEeCCCC
Confidence                      2345566642  333222 22111 11112233 378888877654 1            4678998876


Q ss_pred             CCCceEEecCCCCCCcccccceecCCCeEEEcCCCCC
Q 042680          356 EGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       356 ~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~  392 (530)
                         +-...-.-....  -.....-|||+.++.|+...
T Consensus       315 ---~~~~~~~gh~~~--v~~l~~spdg~~l~s~s~D~  346 (611)
T 1nr0_A          315 ---SIDQVRYGHNKA--ITALSSSADGKTLFSADAEG  346 (611)
T ss_dssp             ---EEEEEECCCSSC--EEEEEECTTSSEEEEEETTS
T ss_pred             ---CcceEEcCCCCC--EEEEEEeCCCCEEEEEeCCC
Confidence               432211110001  11223458999999998643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=81.64  E-value=10  Score=38.09  Aligned_cols=136  Identities=20%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             CCcEEEEe-CceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccc
Q 042680          203 DGNVYVFA-NNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEK  281 (530)
Q Consensus       203 ~G~lfv~G-g~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~  281 (530)
                      .++++++| ++.+.+||..+++..+.+ .+.+ ...+   =.++-+  .        .+++.+++|+.+           
T Consensus       115 ~~n~lAvgld~tV~lWd~~tg~~~~~~-~~~~-~~~~---V~sv~f--s--------pdg~~lasgs~D-----------  168 (420)
T 4gga_A          115 SGNVLAVALDNSVYLWSASSGDILQLL-QMEQ-PGEY---ISSVAW--I--------KEGNYLAVGTSS-----------  168 (420)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEEEE-ECCS-TTCC---EEEEEE--C--------TTSSEEEEEETT-----------
T ss_pred             CCCEEEEEeCCEEEEEECCCCCEEEEE-EecC-CCCc---EEEEEE--C--------CCCCEEEEEECC-----------
Confidence            45566665 578999999999876433 2221 1111   112211  1        268889998865           


Q ss_pred             cccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce
Q 042680          282 RFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF  360 (530)
Q Consensus       282 ~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W  360 (530)
                            .++..+|+..  .+-... .-...|  ..++ -.|+++++.|+...             ...+||...... ..
T Consensus       169 ------g~v~iWd~~~--~~~~~~~~~h~~~--v~~~-s~~~~~l~sgs~d~-------------~i~~~d~~~~~~-~~  223 (420)
T 4gga_A          169 ------AEVQLWDVQQ--QKRLRNMTSHSAR--VGSL-SWNSYILSSGSRSG-------------HIHHHDVRVAEH-HV  223 (420)
T ss_dssp             ------SCEEEEETTT--TEEEEEECCCSSC--EEEE-EEETTEEEEEETTS-------------EEEEEETTSSSC-EE
T ss_pred             ------CeEEEEEcCC--CcEEEEEeCCCCc--eEEE-eeCCCEEEEEeCCC-------------ceeEeeecccce-ee
Confidence                  1356677653  221111 222233  2233 35899999887651             466788766511 11


Q ss_pred             EEecCCCCCCcccccceecCCCeEEEcCCCCC
Q 042680          361 AELAPTDIPRMYHSVANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       361 t~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~  392 (530)
                      ..+...   ..........++|+.++.|++..
T Consensus       224 ~~~~~h---~~~~~~~~~~~~g~~l~s~~~D~  252 (420)
T 4gga_A          224 ATLSGH---SQEVCGLRWAPDGRHLASGGNDN  252 (420)
T ss_dssp             EEEECC---SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeccc---ccceeeeeecCCCCeeeeeeccc
Confidence            112111   11112334567899988888654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=81.61  E-value=8.7  Score=38.05  Aligned_cols=30  Identities=17%  Similarity=0.324  Sum_probs=23.3

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREF  228 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~  228 (530)
                      ...|||+.++.|+.  .+.+||..+++....+
T Consensus       146 ~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~  177 (357)
T 4g56_B          146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY  177 (357)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            34579999998874  6889999999876444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=81.53  E-value=36  Score=32.05  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=15.1

Q ss_pred             EEEecCCc-EEEEeC--ceEEEEeCC
Q 042680          198 VYLLPDGN-VYVFAN--NRSVVHDPK  220 (530)
Q Consensus       198 ~~llp~G~-lfv~Gg--~~~e~yDp~  220 (530)
                      +...++|+ ||+.+.  ....+||..
T Consensus        89 ~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           89 ISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEECC
Confidence            34567888 555553  458889984

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=81.42  E-value=18  Score=36.38  Aligned_cols=136  Identities=14%  Similarity=0.089  Sum_probs=75.6

Q ss_pred             eEEEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcc
Q 042680          197 FVYLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGL  274 (530)
Q Consensus       197 ~~~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~  274 (530)
                      ...+.++|++++.|+  ....+||..+.+....+..-     ..+  -.++.+  .        .+++.+++|+.+    
T Consensus       273 v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----~~~--v~~~~~--~--------~~~~~l~sg~~d----  331 (464)
T 3v7d_B          273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-----TDR--IYSTIY--D--------HERKRCISASMD----  331 (464)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-----SSC--EEEEEE--E--------TTTTEEEEEETT----
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-----CCC--EEEEEE--c--------CCCCEEEEEeCC----
Confidence            334567899888886  46889999998866444211     111  111111  1        256778887754    


Q ss_pred             ccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          275 YLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       275 ~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                   ..+..+|+..  .+-.. .+.........+.+ +++.+++|+.+ |            ++.+||..+
T Consensus       332 -------------g~i~vwd~~~--~~~~~-~~~~h~~~v~~~~~-~~~~l~s~s~d-g------------~v~vwd~~~  381 (464)
T 3v7d_B          332 -------------TTIRIWDLEN--GELMY-TLQGHTALVGLLRL-SDKFLVSAAAD-G------------SIRGWDAND  381 (464)
T ss_dssp             -------------SCEEEEETTT--TEEEE-EECCCSSCEEEEEE-CSSEEEEEETT-S------------EEEEEETTT
T ss_pred             -------------CcEEEEECCC--CcEEE-EEeCCCCcEEEEEE-cCCEEEEEeCC-C------------cEEEEECCC
Confidence                         1356677653  21111 22222223344544 78888888765 1            578999987


Q ss_pred             CCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      .   +-....  .... ......+-+||+++++|+
T Consensus       382 ~---~~~~~~--~~~~-~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          382 Y---SRKFSY--HHTN-LSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             C---CEEEEE--ECTT-CCCEEEEEECSSEEEEEE
T ss_pred             C---ceeeee--cCCC-CccEEEEEeCCCEEEEec
Confidence            6   322111  1111 122345568999999987

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=81.23  E-value=64  Score=34.76  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=37.1

Q ss_pred             ceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCC-c-ccccceecCCCeEEEcCCCC
Q 042680          314 ADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPR-M-YHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       314 ~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R-~-yHS~a~LLpdGrVlv~GG~~  391 (530)
                      ..... |||+.+++.....+.        ....+.++|+.+.   +...+-...... . ........|||++++.++..
T Consensus       290 ~~~~~-pDg~~l~~~~~~~~~--------~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  357 (741)
T 2ecf_A          290 ARVNW-RDPQHLSFQRQSRDQ--------KKLDLVEVTLASN---QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERT  357 (741)
T ss_dssp             EEEEE-EETTEEEEEEEETTS--------SEEEEEEEETTTC---CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTT
T ss_pred             EEEEe-CCCCEEEEEEecccC--------CeEEEEEEECCCC---ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCC
Confidence            34455 999988876543211        1236788999887   655432221111 0 11234456999988777643

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=80.88  E-value=70  Score=35.03  Aligned_cols=132  Identities=10%  Similarity=0.070  Sum_probs=68.4

Q ss_pred             cCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccc
Q 042680          202 PDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEE  279 (530)
Q Consensus       202 p~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~  279 (530)
                      .+|+|++.++  ....+||+.++++. .+.. .......  .-.+++.        +  .++.|.+.. ..         
T Consensus       481 ~~g~lWi~~~t~~Gl~~~d~~~~~~~-~~~~-~~~~~~~--~~~~i~~--------d--~~g~lWigt-~~---------  536 (758)
T 3ott_A          481 NEGNVWVLLYNNKGIDKINPRTREVT-KLFA-DELTGEK--SPNYLLC--------D--EDGLLWVGF-HG---------  536 (758)
T ss_dssp             TTSCEEEEETTCSSEEEEETTTTEEE-EECT-TTSCGGG--CEEEEEE--------C--TTSCEEEEE-TT---------
T ss_pred             CCCCEEEEccCCCCcEEEeCCCCceE-EecC-CCcCCCc--ccceEEE--------C--CCCCEEEEe-cC---------
Confidence            4799998544  46789999999987 4421 1000010  0112211        1  368888642 11         


Q ss_pred             cccccccCCcEEEEEcCCCCCcceec---CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCC
Q 042680          280 EKRFVNALDDCARMVVTSPNPEWKIE---KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPE  356 (530)
Q Consensus       280 ~~~~~~a~~s~~~~dp~~~~~~W~~~---~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~  356 (530)
                               -..+|||..  .+++..   .++...  ..+++-.+|+|++...  .|             ..+|||++. 
T Consensus       537 ---------Gl~~~~~~~--~~~~~~~~~gl~~~~--i~~i~~~~g~lWi~t~--~G-------------l~~~~~~~~-  587 (758)
T 3ott_A          537 ---------GVMRINPKD--ESQQSISFGSFSNNE--ILSMTCVKNSIWVSTT--NG-------------LWIIDRKTM-  587 (758)
T ss_dssp             ---------EEEEECC----CCCCBCCCCC---CC--EEEEEEETTEEEEEES--SC-------------EEEEETTTC-
T ss_pred             ---------ceEEEecCC--CceEEecccCCCccc--eEEEEECCCCEEEECC--CC-------------eEEEcCCCc-
Confidence                     145677753  444321   344322  2233446899888542  22             468999998 


Q ss_pred             CCceEEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680          357 GQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       357 g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                        ++.... ++.. ...+.+....||++|++|-+
T Consensus       588 --~~~~~~-~~~~-~~~~~~~~~~~G~l~fG~~~  617 (758)
T 3ott_A          588 --DARQQN-MTNK-RFTSLLFDPKEDCVYLGGAD  617 (758)
T ss_dssp             --CEEEC---CCC-CCSEEEEETTTTEEEEECBS
T ss_pred             --eeEEec-CCCC-ceeeeEEECCCCcEEEecCC
Confidence              776532 1111 12233444579999998864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=80.71  E-value=19  Score=35.15  Aligned_cols=140  Identities=10%  Similarity=0.018  Sum_probs=75.2

Q ss_pred             EecCC-cEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          200 LLPDG-NVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       200 llp~G-~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ..++| ++++.|+.  .+.+||..+++....+. ..+.  ..+..+ ....|          .+++++++|+.+      
T Consensus        81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~h--~~~v~~-~~~~~----------~~~~~l~s~~~d------  140 (383)
T 3ei3_B           81 WHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ-GMGP--GDAITG-MKFNQ----------FNTNQLFVSSIR------  140 (383)
T ss_dssp             ECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC-CCST--TCBEEE-EEEET----------TEEEEEEEEETT------
T ss_pred             ECCCCCCEEEEEcCCCeEEEEeCCCcccceeee-cCCc--CCceeE-EEeCC----------CCCCEEEEEeCC------
Confidence            34688 88888874  68999999887663332 1111  111111 11111          156888888754      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-C-CCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-K-MPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~-M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                 ..+..+|+..  ...... . -.......+...-|||+.+++|+.+ |            .+.+||...
T Consensus       141 -----------~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~------------~i~i~d~~~  194 (383)
T 3ei3_B          141 -----------GATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST-G------------RLLLLGLDG  194 (383)
T ss_dssp             -----------TEEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT-S------------EEEEEETTS
T ss_pred             -----------CEEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCC-C------------CEEEEECCC
Confidence                       1245566652  222221 1 1111122344556899999998765 1            578999853


Q ss_pred             CCCCceEEecCCCCCCcccccceecCCCe-EEEcCCCC
Q 042680          355 PEGQRFAELAPTDIPRMYHSVANLLPDGK-VFVGGSND  391 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGr-Vlv~GG~~  391 (530)
                      .   ....+....   ..-......|+++ ++++|+..
T Consensus       195 ~---~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~d  226 (383)
T 3ei3_B          195 H---EIFKEKLHK---AKVTHAEFNPRCDWLMATSSVD  226 (383)
T ss_dssp             C---EEEEEECSS---SCEEEEEECSSCTTEEEEEETT
T ss_pred             C---EEEEeccCC---CcEEEEEECCCCCCEEEEEeCC
Confidence            3   443332111   1112234568998 88888753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=80.62  E-value=22  Score=34.76  Aligned_cols=143  Identities=10%  Similarity=0.056  Sum_probs=72.4

Q ss_pred             EecCCcEEEEeCc--eEEEEeCCC----CeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCc
Q 042680          200 LLPDGNVYVFANN--RSVVHDPKA----NKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREG  273 (530)
Q Consensus       200 llp~G~lfv~Gg~--~~e~yDp~t----n~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~  273 (530)
                      ..++|++++.|+.  ...+||..+    .+-...+..   .  ..+... ....|          .+++++++|+.+ + 
T Consensus        75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~---h--~~~v~~-~~~~~----------~~~~~l~s~~~d-g-  136 (416)
T 2pm9_A           75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN---H--SSSVKT-VKFNA----------KQDNVLASGGNN-G-  136 (416)
T ss_dssp             ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC---S--SSCCCE-EEECS----------SSTTBEEEECSS-S-
T ss_pred             ECCCCCeEEEEccCCeEEEeecccccccccchhhccC---C--ccceEE-EEEcC----------CCCCEEEEEcCC-C-
Confidence            3579998888863  688999987    222223321   1  111111 12211          136778888754 1 


Q ss_pred             cccccccccccccCCcEEEEEcCCCC------Ccceec-CCCCccccceeeeecC-CeEEEEcCCCCCCCCcccCCCCCc
Q 042680          274 LYLGEEEKRFVNALDDCARMVVTSPN------PEWKIE-KMPAPRTMADGVLLPN-GEVLIINGADLGSGGWHCADKPSL  345 (530)
Q Consensus       274 ~~~~~~~~~~~~a~~s~~~~dp~~~~------~~W~~~-~M~~~R~~~~~vvLpd-G~VlViGG~~~g~~g~~~~~~p~~  345 (530)
                                     .+..+|+....      ...... .......-.+....|+ ++++++++.+ |            
T Consensus       137 ---------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g------------  188 (416)
T 2pm9_A          137 ---------------EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS-N------------  188 (416)
T ss_dssp             ---------------CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS-S------------
T ss_pred             ---------------eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC-C------------
Confidence                           23445554311      111111 1112222334455577 7899988765 1            


Q ss_pred             ccEEecCCCCCCCceEEecCCCCC----CcccccceecCCC-eEEEcCCCC
Q 042680          346 KPMLYRPNAPEGQRFAELAPTDIP----RMYHSVANLLPDG-KVFVGGSND  391 (530)
Q Consensus       346 ~~eiYDP~t~~g~~Wt~la~~~~~----R~yHS~a~LLpdG-rVlv~GG~~  391 (530)
                      .+.+||..+.   +-...-.....    ...-......||| +++++|+..
T Consensus       189 ~v~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  236 (416)
T 2pm9_A          189 FASIWDLKAK---KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS  236 (416)
T ss_dssp             CEEEEETTTT---EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC
T ss_pred             CEEEEECCCC---CcceEEeccccccccCCceEEEEECCCCCCEEEEEECC
Confidence            5789999887   54322222111    1111223456787 578877754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=80.22  E-value=24  Score=34.35  Aligned_cols=31  Identities=13%  Similarity=0.154  Sum_probs=22.6

Q ss_pred             EEEecCCcEEEEeCc--eEEEEeCCCCeEEEEcc
Q 042680          198 VYLLPDGNVYVFANN--RSVVHDPKANKIIREFP  229 (530)
Q Consensus       198 ~~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p  229 (530)
                      +...++| +++.|+.  ...+||..+++....+.
T Consensus       192 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~  224 (397)
T 1sq9_A          192 VDISERG-LIATGFNNGTVQISELSTLRPLYNFE  224 (397)
T ss_dssp             EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence            3455788 8888764  68899999988765554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	530
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	1e-26
d1k3ia1	102	b.1.18.2 (A:538-639) Galactose oxidase, C-terminal	2e-20

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score =  109 bits (271), Expect = 1e-26
 Identities = 64/429 (14%), Positives = 118/429 (27%), Gaps = 87/429 (20%)

Query: 26  AAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWH 85
           A  P    LG W     +  I      + P + ++ ++ +                    
Sbjct: 3   APQPG---LGRWGPTI-DLPIVPAAAAIEPTSGRVLMWSSY------------------- 39

Query: 86  HNKLTNQTAEDCWCHSIFYDYNKNAVK---ALKVQSDTWCSSGGLSADGRLVMLSDGSFL 142
                   +      +  +D +   V        + D +C    +  +G++V+       
Sbjct: 40  -RNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK 98

Query: 143 VYGGRDAFSYEYVPVEKESNKAA--------------------------IAFPFLFETQD 176
                D+ S  ++P                                       +   ++ 
Sbjct: 99  KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158

Query: 177 FLERPGNPKGRFRLE-------NNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFP 229
           +   P                 ++ + +++    G+V+    + ++     +     +  
Sbjct: 159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA 218

Query: 230 QLPGGARSYPA---TGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNA 286
                 R        G +V+                          G    ++     NA
Sbjct: 219 GKRQSNRGVAPDAMCGNAVMYDAV--------------KGKILTFGGSPDYQDSDATTNA 264

Query: 287 LDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLK 346
                    TSPN  +    +   RT    V+LP+G   I  G   G         P   
Sbjct: 265 HIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE--DSTPVFT 322

Query: 347 PMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELR 406
           P +Y P   E   F +  P  I R+YHS++ LLPDG+VF GG                  
Sbjct: 323 PEIYVP---EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDC-----TTNHFD 374

Query: 407 LEKFTPPYL 415
            + FTP YL
Sbjct: 375 AQIFTPNYL 383

>d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Galactose oxidase, C-terminal domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 83.7 bits (207), Expect = 2e-20
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 420 AALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFL 479
            A RP I    S ++   G    + + +   ++    + S++     TH ++ +QR + L
Sbjct: 3   LATRPKIT-RTSTQSVKVGG--RITISTDSSIS----KASLIRYGTATHTVNTDQRRIPL 55

Query: 480 SVIELKNNVAPGVDEVVVAAPPTSALAPPGYYLLSVVNQ-GIPSHSIWFHLK 530
           ++     N            P  S +A PGY++L V+N  G+PS +    + 
Sbjct: 56  TLTNNGGNS------YSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRVT 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	530
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	100.0
d1k3ia1	102	Galactose oxidase, C-terminal domain {Fungi (Fusar	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.94
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.93
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.89
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.13
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.4
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.03
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.68
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.62
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.53
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	94.18
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	93.51
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	92.89
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	92.85
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	92.44
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	92.1
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	91.56
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	91.55
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	91.5
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	91.48
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	89.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	88.61
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	88.43
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	88.38
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	87.58
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	87.42
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	85.97
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	85.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	83.36
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	81.01

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=100.00  E-value=9.6e-42  Score=349.27  Aligned_cols=306  Identities=22%  Similarity=0.332  Sum_probs=220.4

Q ss_pred             CCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEE
Q 042680           33 FLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVK  112 (530)
Q Consensus        33 ~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~  112 (530)
                      ..|+|+.+.+.+ +...|+++++.+||||+||+....  ...  +.         .       ......++|||.+++|+
T Consensus         7 ~~g~W~~~~~~p-~~~~~~a~~~~~gkv~v~GG~~~~--~~~--~~---------~-------~~~~~~~~yd~~t~~w~   65 (387)
T d1k3ia3           7 GLGRWGPTIDLP-IVPAAAAIEPTSGRVLMWSSYRND--AFG--GS---------P-------GGITLTSSWDPSTGIVS   65 (387)
T ss_dssp             TSCEEEEEEECS-SCCSEEEEETTTTEEEEEEECCCT--TTC--SC---------C-------CSEEEEEEECTTTCCBC
T ss_pred             CCCccCCcCCCC-ccccEEEEEeeCCEEEEEEeecCc--ccC--CC---------C-------CceeEEEEEECCCCcEe
Confidence            379999986654 445555555589999999997532  111  00         0       12466889999999999


Q ss_pred             EccccC---CcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccc
Q 042680          113 ALKVQS---DTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRF  188 (530)
Q Consensus       113 ~l~~~~---~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~  188 (530)
                      .+..+.   ..+|+++++        +.||+|||+||.+..++++| |.++   .| ...+.+..               
T Consensus        66 ~~~~~~~~~~~~~~~~~~--------~~~g~i~v~Gg~~~~~~~~yd~~~~---~w-~~~~~~~~---------------  118 (387)
T d1k3ia3          66 DRTVTVTKHDMFCPGISM--------DGNGQIVVTGGNDAKKTSLYDSSSD---SW-IPGPDMQV---------------  118 (387)
T ss_dssp             CCEEEECSCCCSSCEEEE--------CTTSCEEEECSSSTTCEEEEEGGGT---EE-EECCCCSS---------------
T ss_pred             ecCCCCCCcccceeEEEE--------ecCCcEEEeecCCCcceeEecCccC---cc-cccccccc---------------
Confidence            887663   567887764        66999999999988899999 9875   34 44443321               


Q ss_pred             cccCCccceEEEecCCcEEEEeC--------ceEEEEeCCCCeEEEEccCCCCCC-C-----------cc----------
Q 042680          189 RLENNLYPFVYLLPDGNVYVFAN--------NRSVVHDPKANKIIREFPQLPGGA-R-----------SY----------  238 (530)
Q Consensus       189 ~~~~~~Yp~~~llp~G~lfv~Gg--------~~~e~yDp~tn~w~~~~p~mp~~~-r-----------~y----------  238 (530)
                         .++|+.+.++.||+||++||        +++|+|||.+++|. .++.++... +           .+          
T Consensus       119 ---~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  194 (387)
T d1k3ia3         119 ---ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS  194 (387)
T ss_dssp             ---CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC
T ss_pred             ---cccccceeeecCCceeeeccccccccccceeeeecCCCCcee-ecCCCcccccccccccceeeccceeEEEEeCCCC
Confidence               23567788888999999998        36899999999998 676653210 0           00          


Q ss_pred             ------------------------------------CCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccc
Q 042680          239 ------------------------------------PATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKR  282 (530)
Q Consensus       239 ------------------------------------p~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~  282 (530)
                                                          +..+.+++++.         .+++||++||......        
T Consensus       195 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~v~v~GG~~~~~~--------  257 (387)
T d1k3ia3         195 VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDA---------VKGKILTFGGSPDYQD--------  257 (387)
T ss_dssp             EEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEET---------TTTEEEEECCBSSSSS--------
T ss_pred             EEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeec---------cCCceEEEEeccCCCC--------
Confidence                                                01112222221         3689999999753221        


Q ss_pred             ccccCCcEEEEEcCCC---CCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCC
Q 042680          283 FVNALDDCARMVVTSP---NPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQ  358 (530)
Q Consensus       283 ~~~a~~s~~~~dp~~~---~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~  358 (530)
                       .......+.++....   ...|+.. +|+.+|.++++++++||+|||+||...+...  ....+++++|+|||+++   
T Consensus       258 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~--~~~~~~~~ve~Ydp~~~---  331 (387)
T d1k3ia3         258 -SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF--EDSTPVFTPEIYVPEQD---  331 (387)
T ss_dssp             -SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT--CCCSBCCCCEEEEGGGT---
T ss_pred             -CcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccC--CCCcEeceEEEEECCCC---
Confidence             122334445554432   2346555 8999999999999999999999998754332  24457789999999999   


Q ss_pred             ceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCCCc
Q 042680          359 RFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPE  418 (530)
Q Consensus       359 ~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~~~  418 (530)
                      +|+.+++|+++|+|||+++|++||||||+||+.+.+     ....+.++|+|+|||||++
T Consensus       332 ~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~-----~~~~~~~~e~y~Ppyl~~~  386 (387)
T d1k3ia3         332 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD-----CTTNHFDAQIFTPNYLYNS  386 (387)
T ss_dssp             EEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT-----CSCCCCEEEEEECGGGBCT
T ss_pred             eEEECCCCCCcccceEEEEECCCCEEEEEeCCCcCC-----CCcccceEEEEcchhccCC
Confidence            999999999999999999999999999999986653     2334789999999999864

>d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Galactose oxidase, C-terminal domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=100.00  E-value=1.4e-33  Score=239.22  Aligned_cols=99  Identities=25%  Similarity=0.407  Sum_probs=88.2

Q ss_pred             cccCCCCceeccCCCCccccCCEEEEEEEcCCCCccceEEEEEEcCCccccCCCCCcceEEeeeeeeecccCCCceEEEE
Q 042680          418 EYAALRPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVV  497 (530)
Q Consensus       418 ~~~~~RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v  497 (530)
                      |+.+.||+|++.+ |..++||++|+|+++.      .+.+|+|+|+||+||++|||||+|+|+++..      ++++++|
T Consensus         1 G~~a~RP~I~~~~-~~~i~~G~~f~v~~~~------~i~~v~Li~~gs~THs~~~~QR~v~L~~~~~------~~~~~~v   67 (102)
T d1k3ia1           1 GNLATRPKITRTS-TQSVKVGGRITISTDS------SISKASLIRYGTATHTVNTDQRRIPLTLTNN------GGNSYSF   67 (102)
T ss_dssp             SSBCCCCCEEEES-CSEEETTCEEEEEESS------CCSEEEEEECCEEETTBCSSCCEEECCEEEE------ETTEEEE
T ss_pred             CCCCCCCeecccC-CceecCCCEEEEEecC------cccEEEEEecCCccccCcCCCCEEeceeEec------CCCEEEE
Confidence            3568899998753 8999999999998752      4679999999999999999999999999763      2458999


Q ss_pred             EcCCCCCcCCCcceEEEEEc-CCcCcccEEEEe
Q 042680          498 AAPPTSALAPPGYYLLSVVN-QGIPSHSIWFHL  529 (530)
Q Consensus       498 ~~P~~~~v~ppG~ymlfv~~-~gvPS~~~~v~i  529 (530)
                      ++|+|++|+|||||||||++ +||||+|+||+|
T Consensus        68 ~~P~~~~vaPPG~YmLFvv~~~GvPS~a~~V~v  100 (102)
T d1k3ia1          68 QVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV  100 (102)
T ss_dssp             ECCSCTTTSCSEEEEEEEECTTSCBCCCEEEEE
T ss_pred             EcCCCCCcCCCcCEEEEEECCCCCcccCEEEEe
Confidence            99999999999999999997 799999999998

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-25  Score=220.03  Aligned_cols=252  Identities=14%  Similarity=0.092  Sum_probs=186.5

Q ss_pred             CCCCCCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCC
Q 042680           29 PAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNK  108 (530)
Q Consensus        29 ~~~~~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t  108 (530)
                      ..|...++|+.+.+.+.-++-|+++. .++++|++||.....      ++                ..+....+.||+.+
T Consensus        23 ~yd~~t~~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~------~~----------------~~~~~~~~~yd~~~   79 (288)
T d1zgka1          23 AYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSP------DG----------------NTDSSALDCYNPMT   79 (288)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEET------TE----------------EEECCCEEEEETTT
T ss_pred             EEECCCCeEEECCCCCCccceeEEEE-ECCEEEEEeCcccCC------CC----------------ccccchhhhccccc
Confidence            45566789999977666688888887 799999999975321      11                01346789999999


Q ss_pred             CcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCC
Q 042680          109 NAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGN  183 (530)
Q Consensus       109 ~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~  183 (530)
                      ++|+.++.|+..++..+++        +.+|++|++||...    ...|.| +.++   .|. ..+.+.           
T Consensus        80 ~~w~~~~~~p~~r~~~~~~--------~~~~~i~~~gg~~~~~~~~~~~~~~~~~~---~~~-~~~~~~-----------  136 (288)
T d1zgka1          80 NQWSPCAPMSVPRNRIGVG--------VIDGHIYAVGGSHGCIHHNSVERYEPERD---EWH-LVAPML-----------  136 (288)
T ss_dssp             TEEEECCCCSSCCBTCEEE--------EETTEEEEECCEETTEECCCEEEEETTTT---EEE-ECCCCS-----------
T ss_pred             ccccccccccceecceecc--------ccceeeEEecceecccccceeeeeccccC---ccc-cccccc-----------
Confidence            9999999988666554443        34999999999754    357888 7764   333 333211           


Q ss_pred             CCccccccCCccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCC
Q 042680          184 PKGRFRLENNLYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTY  256 (530)
Q Consensus       184 ~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~  256 (530)
                              ...+.+..+..++++|++||.       ..+.||+.+++|. ..+.++. .+..   .+++.          
T Consensus       137 --------~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~-~~~~~~~-~~~~---~~~~~----------  193 (288)
T d1zgka1         137 --------TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR-MITAMNT-IRSG---AGVCV----------  193 (288)
T ss_dssp             --------SCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE-ECCCCSS-CCBS---CEEEE----------
T ss_pred             --------cccccceeeeeeecceEecCcccccccceEEEeeccccccc-ccccccc-cccc---ccccc----------
Confidence                    122446667779999999983       5899999999998 6665542 2221   22221          


Q ss_pred             CCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCC
Q 042680          257 KPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSG  335 (530)
Q Consensus       257 ~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~  335 (530)
                        .+++|+++||.+..            ..+.+..+||+.  +.+|+.. +++.+|..+.++++ ||+|||+||.+.   
T Consensus       194 --~~~~i~i~GG~~~~------------~~~~~~~~~~~~--~~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~---  253 (288)
T d1zgka1         194 --LHNCIYAAGGYDGQ------------DQLNSVERYDVE--TETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDG---  253 (288)
T ss_dssp             --ETTEEEEECCBCSS------------SBCCCEEEEETT--TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCS---
T ss_pred             --eeeeEEEecCcccc------------ccccceeeeeec--ceeeecccCccCcccceEEEEE-CCEEEEEecCCC---
Confidence              37899999997632            235678899987  4889987 89999999988876 999999999752   


Q ss_pred             CcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccce
Q 042680          336 GWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVAN  377 (530)
Q Consensus       336 g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~  377 (530)
                           ......+|+|||+++   +|+.+++|+.+|.+||+|+
T Consensus       254 -----~~~~~~v~~yd~~~~---~W~~~~~~p~~R~~~~~~~  287 (288)
T d1zgka1         254 -----HTFLDSVECYDPDTD---TWSEVTRMTSGRSGVGVAV  287 (288)
T ss_dssp             -----SCBCCEEEEEETTTT---EEEEEEECSSCCBSCEEEE
T ss_pred             -----CeecceEEEEECCCC---EEEECCCCCCCcEeEEEEE
Confidence                 123446899999999   9999999999999999876

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.3e-24  Score=207.55  Aligned_cols=234  Identities=17%  Similarity=0.205  Sum_probs=174.3

Q ss_pred             eeEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC--------CcEEEE-cCCCCCCCceEEec
Q 042680           99 CHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA--------FSYEYV-PVEKESNKAAIAFP  169 (530)
Q Consensus        99 a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~--------~s~E~y-P~~~~~~~~~~~~p  169 (530)
                      +..++||+++++|+.++.|+.+++..+++        +.++++||+||.+.        .++++| |.++   .|....+
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~--------~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~---~w~~~~~   87 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGC--------VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN---QWSPCAP   87 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE--------EETTEEEEECCEEEETTEEEECCCEEEEETTTT---EEEECCC
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEE--------EECCEEEEEeCcccCCCCccccchhhhcccccc---ccccccc
Confidence            44789999999999999998666554442        34999999999641        368899 8875   4554433


Q ss_pred             cccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeC-------ceEEEEeCCCCeEEEEccCCCCCCCccCCCc
Q 042680          170 FLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN-------NRSVVHDPKANKIIREFPQLPGGARSYPATG  242 (530)
Q Consensus       170 ~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg-------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g  242 (530)
                      +..           +|         +-|..++.+|+||++||       +..+.||+.+++|. ..+.++. .|..   .
T Consensus        88 ~p~-----------~r---------~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~r~~---~  142 (288)
T d1zgka1          88 MSV-----------PR---------NRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH-LVAPMLT-RRIG---V  142 (288)
T ss_dssp             CSS-----------CC---------BTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEE-ECCCCSS-CCBS---C
T ss_pred             ccc-----------ee---------cceeccccceeeEEecceecccccceeeeeccccCccc-ccccccc-cccc---c
Confidence            321           11         23566778999999998       35899999999998 6776663 3332   2


Q ss_pred             eEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecC
Q 042680          243 TSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPN  321 (530)
Q Consensus       243 ~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpd  321 (530)
                      +++.            .+.+++++||.+..            ..+..+++||+.  +++|... .++..|..+.++++ +
T Consensus       143 ~~~~------------~~~~~~~~GG~~~~------------~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~-~  195 (288)
T d1zgka1         143 GVAV------------LNRLLYAVGGFDGT------------NRLNSAECYYPE--RNEWRMITAMNTIRSGAGVCVL-H  195 (288)
T ss_dssp             EEEE------------ETTEEEEECCBCSS------------CBCCCEEEEETT--TTEEEECCCCSSCCBSCEEEEE-T
T ss_pred             eeee------------eeecceEecCcccc------------cccceEEEeecc--ccccccccccccccccccccce-e
Confidence            2222            37899999997522            235678999997  4889887 78888888887765 9


Q ss_pred             CeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCC
Q 042680          322 GEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKF  401 (530)
Q Consensus       322 G~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~  401 (530)
                      ++|+++||...        .......++||+.++   +|+.+++++.+|..|+++++  ||+|||+||....      .+
T Consensus       196 ~~i~i~GG~~~--------~~~~~~~~~~~~~~~---~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~------~~  256 (288)
T d1zgka1         196 NCIYAAGGYDG--------QDQLNSVERYDVETE---TWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGH------TF  256 (288)
T ss_dssp             TEEEEECCBCS--------SSBCCCEEEEETTTT---EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSS------CB
T ss_pred             eeEEEecCccc--------cccccceeeeeecce---eeecccCccCcccceEEEEE--CCEEEEEecCCCC------ee
Confidence            99999999752        123457889999999   99999999999999998877  9999999996432      12


Q ss_pred             CCcceEEEEcCCCCC
Q 042680          402 PTELRLEKFTPPYLA  416 (530)
Q Consensus       402 ~t~~~vE~y~Ppyl~  416 (530)
                        ...+|+|+|..-.
T Consensus       257 --~~~v~~yd~~~~~  269 (288)
T d1zgka1         257 --LDSVECYDPDTDT  269 (288)
T ss_dssp             --CCEEEEEETTTTE
T ss_pred             --cceEEEEECCCCE
Confidence              3469999999753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.89  E-value=2.5e-22  Score=203.98  Aligned_cols=247  Identities=15%  Similarity=0.136  Sum_probs=152.0

Q ss_pred             CCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC----------CcEEEE-cCCCCCCCceEEecccccc
Q 042680          106 YNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----------FSYEYV-PVEKESNKAAIAFPFLFET  174 (530)
Q Consensus       106 p~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----------~s~E~y-P~~~~~~~~~~~~p~l~~t  174 (530)
                      |..++|++...++...-+.++        +..||||||+||...          ..+|+| |.++   +|....++..  
T Consensus         6 p~~g~W~~~~~~p~~~~~~a~--------~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~---~w~~~~~~~~--   72 (387)
T d1k3ia3           6 PGLGRWGPTIDLPIVPAAAAI--------EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG---IVSDRTVTVT--   72 (387)
T ss_dssp             TTSCEEEEEEECSSCCSEEEE--------ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC---CBCCCEEEEC--
T ss_pred             CCCCccCCcCCCCccccEEEE--------EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCC---cEeecCCCCC--
Confidence            668899998887655433333        355999999999742          137889 9886   4543333311  


Q ss_pred             ccccCCCCCCCccccccCCccceEEEecCCcEEEEeC---ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCC
Q 042680          175 QDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN---NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYL  251 (530)
Q Consensus       175 ~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg---~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~  251 (530)
                               ++.++      .....++.||+||++||   +++++|||.+++|. .+++||. +|.+   .+++.+    
T Consensus        73 ---------~~~~~------~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~-~~~~~~~-~r~~---~~~~~~----  128 (387)
T d1k3ia3          73 ---------KHDMF------CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI-PGPDMQV-ARGY---QSSATM----  128 (387)
T ss_dssp             ---------SCCCS------SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE-ECCCCSS-CCSS---CEEEEC----
T ss_pred             ---------Ccccc------eeEEEEecCCcEEEeecCCCcceeEecCccCccc-ccccccc-cccc---cceeee----
Confidence                     22222      23346678999999997   57899999999998 7999984 5665   334433    


Q ss_pred             CCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CC-----------------------
Q 042680          252 PRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KM-----------------------  307 (530)
Q Consensus       252 ~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M-----------------------  307 (530)
                             .+++||++||.....           ..++++++|||.  +++|+.. .+                       
T Consensus       129 -------~dG~v~v~GG~~~~~-----------~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (387)
T d1k3ia3         129 -------SDGRVFTIGGSWSGG-----------VFEKNGEVYSPS--SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF  188 (387)
T ss_dssp             -------TTSCEEEECCCCCSS-----------SCCCCEEEEETT--TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred             -------cCCceeeeccccccc-----------cccceeeeecCC--CCceeecCCCcccccccccccceeeccceeEEE
Confidence                   379999999964221           123445555554  2445432 21                       


Q ss_pred             ---------------------------------CCc------cccceeeee--cCCeEEEEcCCCCCCCCcccCCCCCcc
Q 042680          308 ---------------------------------PAP------RTMADGVLL--PNGEVLIINGADLGSGGWHCADKPSLK  346 (530)
Q Consensus       308 ---------------------------------~~~------R~~~~~vvL--pdG~VlViGG~~~g~~g~~~~~~p~~~  346 (530)
                                                       +..      +..+.++.+  .+|+|||+||...+.............
T Consensus       189 ~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~  268 (387)
T d1k3ia3         189 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT  268 (387)
T ss_dssp             ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred             EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeeccc
Confidence                                             111      112222222  378899999875322111000000112


Q ss_pred             cEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCC
Q 042680          347 PMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYL  415 (530)
Q Consensus       347 ~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl  415 (530)
                      .+.+++.++   .|+.+++|+.+|.+|++++ ++||+|||+||....... .... ...++|+|+|..-
T Consensus       269 ~~~~~~~~~---~~~~~~~~p~~r~~~~~~~-~~dg~i~v~GG~~~~~~~-~~~~-~~~~ve~Ydp~~~  331 (387)
T d1k3ia3         269 LGEPGTSPN---TVFASNGLYFARTFHTSVV-LPDGSTFITGGQRRGIPF-EDST-PVFTPEIYVPEQD  331 (387)
T ss_dssp             CCSTTSCCE---EEECTTCCSSCCBSCEEEE-CTTSCEEEECCBSBCCTT-CCCS-BCCCCEEEEGGGT
T ss_pred             ccccccCCC---ceeeccccccccccceeee-ccCCeEEEECCcccCccC-CCCc-EeceEEEEECCCC
Confidence            233445556   8899999999999998554 589999999997643211 1111 1457999999764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.13  E-value=0.027  Score=51.49  Aligned_cols=142  Identities=12%  Similarity=0.046  Sum_probs=73.3

Q ss_pred             EEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...++|++++.|+.  ...+||..+++.. .+..+..   ..+.  .++.+  .        .+++.+++|+.+      
T Consensus       143 ~~s~~~~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~---~~~i--~~~~~--~--------~~~~~l~~~~~d------  200 (299)
T d1nr0a2         143 ALSNDKQFVAVGGQDSKVHVYKLSGASVS-EVKTIVH---PAEI--TSVAF--S--------NNGAFLVATDQS------  200 (299)
T ss_dssp             EECTTSCEEEEEETTSEEEEEEEETTEEE-EEEEEEC---SSCE--EEEEE--C--------TTSSEEEEEETT------
T ss_pred             ccccccccccccccccccccccccccccc-ccccccc---cccc--ccccc--c--------cccccccccccc------
Confidence            34579999998864  6789999888765 2221110   1111  11111  1        256777887654      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCccee-c-CCCCcccc-ceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKI-E-KMPAPRTM-ADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~-~-~M~~~R~~-~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                                 ..+..||...  ..... . .+...... .+...-|+|+.+++||.+ |            .+.+||.+
T Consensus       201 -----------~~i~~~~~~~--~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d-g------------~i~iwd~~  254 (299)
T d1nr0a2         201 -----------RKVIPYSVAN--NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD-N------------SVIVWNMN  254 (299)
T ss_dssp             -----------SCEEEEEGGG--TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT-S------------CEEEEETT
T ss_pred             -----------cccccccccc--cccccccccccccccccccccccccccceEEEcCC-C------------EEEEEECC
Confidence                       1356677653  22221 1 22211111 222345899999999865 1            57899988


Q ss_pred             CCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          354 APEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       354 t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      +.........  .......- .++.-+|++.+++||.+
T Consensus       255 ~~~~~~~~~~--~~~~~~~v-~~~~~~~~~~l~s~s~D  289 (299)
T d1nr0a2         255 KPSDHPIIIK--GAHAMSSV-NSVIWLNETTIVSAGQD  289 (299)
T ss_dssp             CTTSCCEEET--TSSTTSCE-EEEEEEETTEEEEEETT
T ss_pred             CCCcceEEEe--cCCCCCcE-EEEEECCCCEEEEEeCC
Confidence            7722221111  11111111 12233577888888753

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.90  E-value=0.63  Score=42.63  Aligned_cols=137  Identities=18%  Similarity=0.239  Sum_probs=73.6

Q ss_pred             EEEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          198 VYLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       198 ~~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      ..+.++|++|+...  ....+||+..+... .+..-.  .-..| .+.++    .        .++.||++....     
T Consensus       119 ~avd~~G~i~v~~~~~~~~~~~~~~g~~~~-~~g~~~--~~~~~-~~i~~----d--------~~g~i~v~d~~~-----  177 (279)
T d1q7fa_         119 VTVDNKGRIIVVECKVMRVIIFDQNGNVLH-KFGCSK--HLEFP-NGVVV----N--------DKQEIFISDNRA-----  177 (279)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTSCEEE-EEECTT--TCSSE-EEEEE----C--------SSSEEEEEEGGG-----
T ss_pred             eccccCCcEEEEeeccceeeEeccCCceee-cccccc--ccccc-ceeee----c--------cceeEEeeeccc-----
Confidence            34557899999864  45788998876543 332111  11121 11222    1        268899875432     


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceec-----CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEe
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-----KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLY  350 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-----~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiY  350 (530)
                                  ..+.+||+.   .++...     .+..|+   +..+-++|+|||......            ..+.+|
T Consensus       178 ------------~~V~~~d~~---G~~~~~~g~~g~~~~P~---giavD~~G~i~Vad~~~~------------~~v~~f  227 (279)
T d1q7fa_         178 ------------HCVKVFNYE---GQYLRQIGGEGITNYPI---GVGINSNGEILIADNHNN------------FNLTIF  227 (279)
T ss_dssp             ------------TEEEEEETT---CCEEEEESCTTTSCSEE---EEEECTTCCEEEEECSSS------------CEEEEE
T ss_pred             ------------cceeeeecC---CceeeeecccccccCCc---ccccccCCeEEEEECCCC------------cEEEEE
Confidence                        235678865   333221     233333   334458999999865321            147789


Q ss_pred             cCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          351 RPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       351 DP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      ||+-..  .++........+ -|++| +.+||+|||+-+
T Consensus       228 ~~~G~~--~~~~~~~~~~~~-p~~va-v~~dG~l~V~~~  262 (279)
T d1q7fa_         228 TQDGQL--ISALESKVKHAQ-CFDVA-LMDDGSVVLASK  262 (279)
T ss_dssp             CTTSCE--EEEEEESSCCSC-EEEEE-EETTTEEEEEET
T ss_pred             CCCCCE--EEEEeCCCCCCC-EeEEE-EeCCCcEEEEeC
Confidence            986331  112222222222 24444 569999999754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.40  E-value=0.18  Score=47.88  Aligned_cols=100  Identities=16%  Similarity=0.103  Sum_probs=53.6

Q ss_pred             EecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          200 LLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       200 llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      ..|+|+.++.|+.  .+.+||..+++|...+ .+.+.  ..+.  .++-.  .        .+++.+++|+.+ +     
T Consensus        59 fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~--~~~v--~~i~~--~--------p~~~~l~~~s~d-~-----  117 (371)
T d1k8kc_          59 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL-VILRI--NRAA--RCVRW--A--------PNEKKFAVGSGS-R-----  117 (371)
T ss_dssp             EETTTTEEEEEETTSCEEEEEEETTEEEEEE-ECCCC--SSCE--EEEEE--C--------TTSSEEEEEETT-S-----
T ss_pred             ECCCCCEEEEEECCCeEEEEeeccccccccc-ccccc--cccc--ccccc--c--------cccccceeeccc-C-----
Confidence            3589999888874  6899999999987332 23221  1111  11111  1        156777777643 1     


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceec-CCCCcccc-ceeeeecCCeEEEEcCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTM-ADGVLLPNGEVLIINGAD  331 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~-~~~vvLpdG~VlViGG~~  331 (530)
                                 .+..++.......|... .+..-+.. .+...-|||+.+++|+.+
T Consensus       118 -----------~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_         118 -----------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             -----------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             -----------cceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence                       23344444333444433 22211211 223335899999988765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.03  E-value=1.2  Score=41.04  Aligned_cols=181  Identities=13%  Similarity=0.093  Sum_probs=91.9

Q ss_pred             ccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc--
Q 042680          136 LSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--  212 (530)
Q Consensus       136 L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--  212 (530)
                      .+||+.++.|+.++ ++.+| ....   +......+ ..         +.       .... .+.-.++|+.++.++.  
T Consensus        67 sp~g~~latg~~dg-~i~iwd~~~~---~~~~~~~~-~~---------~~-------~~v~-~v~~s~d~~~l~~~~~~~  124 (311)
T d1nr0a1          67 SPSGYYCASGDVHG-NVRIWDTTQT---THILKTTI-PV---------FS-------GPVK-DISWDSESKRIAAVGEGR  124 (311)
T ss_dssp             CTTSSEEEEEETTS-EEEEEESSST---TCCEEEEE-EC---------SS-------SCEE-EEEECTTSCEEEEEECCS
T ss_pred             eCCCCeEeccccCc-eEeeeeeecc---cccccccc-cc---------cc-------Cccc-cccccccccccccccccc
Confidence            46999999998874 67788 4433   12211111 00         00       0000 1223578998887753  


Q ss_pred             --eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcE
Q 042680          213 --RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDC  290 (530)
Q Consensus       213 --~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~  290 (530)
                        ...+||..+.+..   ..+.+. .. +.. ...+.|          ....++++|+.+                 ..+
T Consensus       125 ~~~~~v~~~~~~~~~---~~l~~h-~~-~v~-~v~~~~----------~~~~~l~sgs~d-----------------~~i  171 (311)
T d1nr0a1         125 ERFGHVFLFDTGTSN---GNLTGQ-AR-AMN-SVDFKP----------SRPFRIISGSDD-----------------NTV  171 (311)
T ss_dssp             SCSEEEEETTTCCBC---BCCCCC-SS-CEE-EEEECS----------SSSCEEEEEETT-----------------SCE
T ss_pred             ccccccccccccccc---cccccc-cc-ccc-cccccc----------cceeeecccccc-----------------ccc
Confidence              3678898887643   223221 11 101 111222          123356777654                 124


Q ss_pred             EEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE-EecCCCC
Q 042680          291 ARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA-ELAPTDI  368 (530)
Q Consensus       291 ~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt-~la~~~~  368 (530)
                      ..||...  .+-... .-.... -.+...-|||+.+++|+.. |            .+.+||..+.   +-. .+.....
T Consensus       172 ~i~d~~~--~~~~~~~~~~~~~-i~~v~~~p~~~~l~~~~~d-~------------~v~~~d~~~~---~~~~~~~~~~~  232 (311)
T d1nr0a1         172 AIFEGPP--FKFKSTFGEHTKF-VHSVRYNPDGSLFASTGGD-G------------TIVLYNGVDG---TKTGVFEDDSL  232 (311)
T ss_dssp             EEEETTT--BEEEEEECCCSSC-EEEEEECTTSSEEEEEETT-S------------CEEEEETTTC---CEEEECBCTTS
T ss_pred             ccccccc--ccccccccccccc-ccccccCcccccccccccc-c------------cccccccccc---ccccccccccc
Confidence            5666542  111111 111122 2344556899999998864 1            4678998776   322 2222222


Q ss_pred             CCccccc----ceecCCCeEEEcCCC
Q 042680          369 PRMYHSV----ANLLPDGKVFVGGSN  390 (530)
Q Consensus       369 ~R~yHS~----a~LLpdGrVlv~GG~  390 (530)
                      ....|..    ...-|||+.+++||.
T Consensus       233 ~~~~h~~~V~~~~~s~~~~~l~tgs~  258 (311)
T d1nr0a1         233 KNVAHSGSVFGLTWSPDGTKIASASA  258 (311)
T ss_dssp             SSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccCCCCCEEEEEeC
Confidence            2333442    234589999999884

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=1.5  Score=40.34  Aligned_cols=134  Identities=15%  Similarity=0.145  Sum_probs=71.8

Q ss_pred             ecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc
Q 042680          201 LPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE  278 (530)
Q Consensus       201 lp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~  278 (530)
                      .++|+.++.|+  ....+||.++++-.+.+. ..     .+  -.++.+  .        .+++.+++|+.+ +      
T Consensus       192 s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~-----~~--i~~l~~--~--------~~~~~l~~~~~d-~------  246 (337)
T d1gxra_         192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FT-----SQ--IFSLGY--C--------PTGEWLAVGMES-S------  246 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CS-----SC--EEEEEE--C--------TTSSEEEEEETT-S------
T ss_pred             cccccccccccccccccccccccceeecccc-cc-----cc--eEEEEE--c--------ccccccceeccc-c------
Confidence            46888888876  467899999987653331 11     11  112211  1        256777887754 1      


Q ss_pred             ccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCC
Q 042680          279 EEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQ  358 (530)
Q Consensus       279 ~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~  358 (530)
                                .+..+|... ...... ........ +...-|||+.++.|+.+ |            .+.+||-.+.  +
T Consensus       247 ----------~i~i~d~~~-~~~~~~-~~~~~~i~-~v~~s~~g~~l~s~s~D-g------------~i~iwd~~~~--~  298 (337)
T d1gxra_         247 ----------NVEVLHVNK-PDKYQL-HLHESCVL-SLKFAYCGKWFVSTGKD-N------------LLNAWRTPYG--A  298 (337)
T ss_dssp             ----------CEEEEETTS-SCEEEE-CCCSSCEE-EEEECTTSSEEEEEETT-S------------EEEEEETTTC--C
T ss_pred             ----------ccccccccc-cccccc-cccccccc-eEEECCCCCEEEEEeCC-C------------eEEEEECCCC--C
Confidence                      245566653 111111 12222222 22334899999988765 1            4678987665  1


Q ss_pred             ceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          359 RFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       359 ~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      .-.....  ..+. .+ ...-|||+.+++||.+
T Consensus       299 ~~~~~~~--~~~v-~~-~~~s~d~~~l~t~s~D  327 (337)
T d1gxra_         299 SIFQSKE--SSSV-LS-CDISVDDKYIVTGSGD  327 (337)
T ss_dssp             EEEEEEC--SSCE-EE-EEECTTSCEEEEEETT
T ss_pred             EEEEccC--CCCE-EE-EEEeCCCCEEEEEeCC
Confidence            2222211  0111 12 3356899999998753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.62  E-value=0.34  Score=45.92  Aligned_cols=143  Identities=13%  Similarity=0.110  Sum_probs=77.3

Q ss_pred             ecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc
Q 042680          201 LPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE  278 (530)
Q Consensus       201 lp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~  278 (530)
                      -+||+++++|+.  .+.+||..++++. ....+.+.  ..+-  .++  ...        .+++.+++||.+        
T Consensus        16 s~dg~~la~~~~~~~i~iw~~~~~~~~-~~~~l~gH--~~~V--~~l--~fs--------p~~~~l~s~s~D--------   72 (371)
T d1k8kc_          16 NKDRTQIAICPNNHEVHIYEKSGNKWV-QVHELKEH--NGQV--TGV--DWA--------PDSNRIVTCGTD--------   72 (371)
T ss_dssp             CTTSSEEEEECSSSEEEEEEEETTEEE-EEEEEECC--SSCE--EEE--EEE--------TTTTEEEEEETT--------
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCCEE-EEEEecCC--CCCE--EEE--EEC--------CCCCEEEEEECC--------
Confidence            479999988874  5789999999876 34333321  1111  111  111        156777877754        


Q ss_pred             ccccccccCCcEEEEEcCCCCCcceec-CC-CCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCC
Q 042680          279 EEKRFVNALDDCARMVVTSPNPEWKIE-KM-PAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPE  356 (530)
Q Consensus       279 ~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M-~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~  356 (530)
                               .++..+|+..  ..|... .. ...+.-.++..-|||+.+++|+.+.             +..+|+.+...
T Consensus        73 ---------~~i~vWd~~~--~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~-------------~i~i~~~~~~~  128 (371)
T d1k8kc_          73 ---------RNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-------------VISICYFEQEN  128 (371)
T ss_dssp             ---------SCEEEEEEET--TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS-------------SEEEEEEETTT
T ss_pred             ---------CeEEEEeecc--cccccccccccccccccccccccccccceeecccC-------------cceeeeeeccc
Confidence                     2356677763  667654 33 2223333444568999999987541             34555554431


Q ss_pred             CCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          357 GQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       357 g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      . .+........-+.--.....-|||+.++.|+..
T Consensus       129 ~-~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_         129 D-WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             T-EEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             c-cccccccccccccccccccccccccceeccccC
Confidence            1 333222111111110112346899999998753

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.53  E-value=1.5  Score=39.13  Aligned_cols=139  Identities=16%  Similarity=0.183  Sum_probs=73.8

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ...+++.+++.|+  ....+||..+++-...+..-     ..+... ....           .+++.+++|+.+ +    
T Consensus       191 ~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h-----~~~i~~-v~~~-----------p~~~~l~s~s~d-~----  248 (340)
T d1tbga_         191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH-----ESDINA-ICFF-----------PNGNAFATGSDD-A----  248 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTTEEEEEECCC-----SSCEEE-EEEC-----------TTSSEEEEEETT-S----
T ss_pred             ccccccceeEEeecCceEEEEECCCCcEEEEEeCC-----CCCeEE-EEEC-----------CCCCEEEEEeCC-C----
Confidence            3445778888776  46789999998766444211     111111 1121           267788887754 1    


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-C-CCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-K-MPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~-M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                  .+..+|...  ...... . ............-|+|+++++|+.+ |            .+.+||..+
T Consensus       249 ------------~i~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-g------------~i~iwd~~~  301 (340)
T d1tbga_         249 ------------TCRLFDLRA--DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-F------------NCNVWDALK  301 (340)
T ss_dssp             ------------CEEEEETTT--TEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT-S------------CEEEEETTT
T ss_pred             ------------eEEEEeecc--cccccccccccccCceEEEEECCCCCEEEEEECC-C------------EEEEEECCC
Confidence                        244566542  221111 1 1111112233445899999998865 1            578999876


Q ss_pred             CCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      .  +.-..+.... ...  .....-|||+.++.||.+
T Consensus       302 ~--~~~~~~~~H~-~~V--~~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         302 A--DRAGVLAGHD-NRV--SCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             C--CEEEEECCCS-SCE--EEEEECTTSSCEEEEETT
T ss_pred             C--cEEEEEcCCC-CCE--EEEEEeCCCCEEEEEccC
Confidence            5  1222222110 000  112346899999998854

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.18  E-value=1.8  Score=39.85  Aligned_cols=114  Identities=12%  Similarity=0.092  Sum_probs=59.8

Q ss_pred             EEEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          198 VYLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       198 ~~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      +...|+|++++.|+  ....+||..+++-...+....  .+.....+...-+...        .+++.+++||.+ +   
T Consensus       195 v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~--~~~~~h~~~V~~~~~s--------~~~~~l~tgs~D-g---  260 (311)
T d1nr0a1         195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--LKNVAHSGSVFGLTWS--------PDGTKIASASAD-K---  260 (311)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--SSSCSSSSCEEEEEEC--------TTSSEEEEEETT-S---
T ss_pred             cccCccccccccccccccccccccccccccccccccc--cccccccccccccccC--------CCCCEEEEEeCC-C---
Confidence            34457999998886  468899999887654443321  1111111111111112        257888888754 1   


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                                   .+..+|...  .+-... +...........+.++++.++++|.+ |            .+.+|||+
T Consensus       261 -------------~v~iwd~~t--~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~d-G------------~i~~wd~d  311 (311)
T d1nr0a1         261 -------------TIKIWNVAT--LKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN-G------------FINFVNPE  311 (311)
T ss_dssp             -------------EEEEEETTT--TEEEEEEECCSSGGGCEEEEEECSSCEEEEETT-C------------CEEEEETT
T ss_pred             -------------eEEEEECCC--CcEEEEEECCCCccceEEEEEecCCEEEEEECC-C------------EEEEEeCC
Confidence                         245566542  221111 22222212222344677777777765 2            46788885

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.51  E-value=1.3  Score=40.40  Aligned_cols=144  Identities=9%  Similarity=0.169  Sum_probs=73.5

Q ss_pred             cceEEEe-cCCcEEEE--eCceEEEEeCCCCeEEEEccCCCC--CCCccCCCceEeeccCCCCCCCCCCCCcEEEE-ecC
Q 042680          195 YPFVYLL-PDGNVYVF--ANNRSVVHDPKANKIIREFPQLPG--GARSYPATGTSVLLPLYLPRDTYKPVDAEVLI-CGG  268 (530)
Q Consensus       195 Yp~~~ll-p~G~lfv~--Gg~~~e~yDp~tn~w~~~~p~mp~--~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v-~GG  268 (530)
                      +|+..++ ++|+|||.  +++...+||+..+ +.+.++....  +....|. +.+ ..+          ..+..++ +-+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~-~~~-~~~----------~~~~~~~~~~~   90 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPN-RVA-VVR----------NSGDIIVTERS   90 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEE-EEE-EET----------TTTEEEEEECG
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCC-EEEEecccCCCcccccccc-ccc-ccc----------cccccceeccC
Confidence            5776555 89999998  4577889998754 4445543211  1111221 111 111          1233333 322


Q ss_pred             ccCCccccccccccccccCCcEEEEEcCCCCCcceec---CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCc
Q 042680          269 SVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE---KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSL  345 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~---~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~  345 (530)
                      .+                 ..+.++++.  ...+...   .+..+   ....+-++|++|+.....             .
T Consensus        91 ~~-----------------~~i~~~~~~--g~~~~~~~~~~~~~p---~~~avd~~G~i~v~~~~~-------------~  135 (279)
T d1q7fa_          91 PT-----------------HQIQIYNQY--GQFVRKFGATILQHP---RGVTVDNKGRIIVVECKV-------------M  135 (279)
T ss_dssp             GG-----------------CEEEEECTT--SCEEEEECTTTCSCE---EEEEECTTSCEEEEETTT-------------T
T ss_pred             Cc-----------------ccccccccc--ccceeecCCCccccc---ceeccccCCcEEEEeecc-------------c
Confidence            11                 123444443  1222221   23333   344556899999987532             2


Q ss_pred             ccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680          346 KPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       346 ~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~  390 (530)
                      ...+|||...   .............-+..+ .-++|++|++...
T Consensus       136 ~~~~~~~~g~---~~~~~g~~~~~~~~~~i~-~d~~g~i~v~d~~  176 (279)
T d1q7fa_         136 RVIIFDQNGN---VLHKFGCSKHLEFPNGVV-VNDKQEIFISDNR  176 (279)
T ss_dssp             EEEEECTTSC---EEEEEECTTTCSSEEEEE-ECSSSEEEEEEGG
T ss_pred             eeeEeccCCc---eeecccccccccccceee-eccceeEEeeecc
Confidence            5678998766   444333332233333433 4578999998653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=92.89  E-value=2.8  Score=36.74  Aligned_cols=58  Identities=19%  Similarity=0.205  Sum_probs=33.3

Q ss_pred             eeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE-EecCCCCCCcccccceecCCCe-EEEcCCC
Q 042680          316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA-ELAPTDIPRMYHSVANLLPDGK-VFVGGSN  390 (530)
Q Consensus       316 ~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt-~la~~~~~R~yHS~a~LLpdGr-Vlv~GG~  390 (530)
                      ....++|+.+++.+...          ...++.+||..+.   +.. .+....   .-++.+ +-|||+ +||+++.
T Consensus       205 ~~~~~~g~~~~v~~~~~----------~~~~v~v~D~~t~---~~~~~~~~~~---~~~~va-~spdg~~l~va~~~  264 (301)
T d1l0qa2         205 IAVNPEGTKAYVTNVDK----------YFNTVSMIDTGTN---KITARIPVGP---DPAGIA-VTPDGKKVYVALSF  264 (301)
T ss_dssp             EEECTTSSEEEEEEECS----------SCCEEEEEETTTT---EEEEEEECCS---SEEEEE-ECTTSSEEEEEETT
T ss_pred             eeccccccccccccccc----------eeeeeeeeecCCC---eEEEEEcCCC---CEEEEE-EeCCCCEEEEEECC
Confidence            34557887766654331          1225789999887   543 222222   223433 459997 6788764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.85  E-value=3.1  Score=37.19  Aligned_cols=138  Identities=17%  Similarity=0.254  Sum_probs=71.3

Q ss_pred             cce-EEEecCCcEEEEeCc-e-EEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccC
Q 042680          195 YPF-VYLLPDGNVYVFANN-R-SVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVR  271 (530)
Q Consensus       195 Yp~-~~llp~G~lfv~Gg~-~-~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~  271 (530)
                      +|+ +.+.++|+||+.... . ..+++..+..+.  . ...  ...+|. +.++ -           .+++||++--.+ 
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~--~-~~~--~~~~p~-~iav-d-----------~~g~i~v~d~~~-  118 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV--L-PFD--GLNYPE-GLAV-D-----------TQGAVYVADRGN-  118 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE--C-CCC--SCCSEE-EEEE-C-----------TTCCEEEEEGGG-
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceee--e-eee--eeeecc-cccc-c-----------ccceeEeecccc-
Confidence            355 345579999998653 3 334444445443  1 111  123332 2222 1           267898873211 


Q ss_pred             CccccccccccccccCCcEEEEEcCCCCCcceec--CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEE
Q 042680          272 EGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE--KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPML  349 (530)
Q Consensus       272 ~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~--~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~ei  349 (530)
                                      ....++++.. ...|...  .+..++   +.++-++|++|+.....             ..+..
T Consensus       119 ----------------~~~~~~~~~~-~~~~~~~~~~~~~p~---~i~~~~~g~~~v~~~~~-------------~~i~~  165 (260)
T d1rwia_         119 ----------------NRVVKLAAGS-KTQTVLPFTGLNDPD---GVAVDNSGNVYVTDTDN-------------NRVVK  165 (260)
T ss_dssp             ----------------TEEEEECTTC-SSCEECCCCSCCSCC---EEEECTTCCEEEEEGGG-------------TEEEE
T ss_pred             ----------------cccccccccc-ceeeeeeecccCCcc---eeeecCCCCEeeecccc-------------ccccc
Confidence                            1234555442 2233332  344444   33445899999986432             15778


Q ss_pred             ecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          350 YRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       350 YDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      ||++..   ....+..... +.-++. ++.++|++||+-.
T Consensus       166 ~d~~~~---~~~~~~~~~~-~~p~gi-~~d~~g~l~vsd~  200 (260)
T d1rwia_         166 LEAESN---NQVVLPFTDI-TAPWGI-AVDEAGTVYVTEH  200 (260)
T ss_dssp             ECTTTC---CEEECCCSSC-CSEEEE-EECTTCCEEEEET
T ss_pred             cccccc---eeeeeecccc-CCCccc-eeeeeeeeeeeec
Confidence            998876   4333322222 222333 4458999999864

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=3.8  Score=37.30  Aligned_cols=177  Identities=16%  Similarity=0.171  Sum_probs=89.8

Q ss_pred             EccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc-
Q 042680          135 MLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN-  212 (530)
Q Consensus       135 ~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-  212 (530)
                      -.+||+.+++|+.++ ++.+| ....   .......+ ...                 ...-......+++++++.++. 
T Consensus       105 ~s~dg~~l~s~~~dg-~i~iwd~~~~---~~~~~~~~-~~~-----------------~~~v~~~~~~~~~~~l~s~~~d  162 (337)
T d1gxra_         105 LLPDGCTLIVGGEAS-TLSIWDLAAP---TPRIKAEL-TSS-----------------APACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             ECTTSSEEEEEESSS-EEEEEECCCC-----EEEEEE-ECS-----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             EcCCCCEEEEeeccc-cccccccccc---cccccccc-ccc-----------------cccccccccccccccccccccc
Confidence            356899999988764 57777 3322   11211111 100                 000012234578998888764 


Q ss_pred             -eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEE
Q 042680          213 -RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCA  291 (530)
Q Consensus       213 -~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~  291 (530)
                       ...+||..+++..+.....     ..+  -.++.+  .        .+++.+++|+.+                 ..+.
T Consensus       163 ~~i~~~~~~~~~~~~~~~~~-----~~~--v~~l~~--s--------~~~~~~~~~~~d-----------------~~v~  208 (337)
T d1gxra_         163 GNIAVWDLHNQTLVRQFQGH-----TDG--ASCIDI--S--------NDGTKLWTGGLD-----------------NTVR  208 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCC-----SSC--EEEEEE--C--------TTSSEEEEEETT-----------------SEEE
T ss_pred             cccccccccccccccccccc-----ccc--cccccc--c--------cccccccccccc-----------------cccc
Confidence             6789999998765333211     111  112211  1        256667777653                 1244


Q ss_pred             EEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCC
Q 042680          292 RMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPR  370 (530)
Q Consensus       292 ~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R  370 (530)
                      .+|...  .+-... ...  ..-.+...-|+++.+++|+.+ |            ...+||..+.  +.......  .  
T Consensus       209 i~d~~~--~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~d-~------------~i~i~d~~~~--~~~~~~~~--~--  265 (337)
T d1gxra_         209 SWDLRE--GRQLQQHDFT--SQIFSLGYCPTGEWLAVGMES-S------------NVEVLHVNKP--DKYQLHLH--E--  265 (337)
T ss_dssp             EEETTT--TEEEEEEECS--SCEEEEEECTTSSEEEEEETT-S------------CEEEEETTSS--CEEEECCC--S--
T ss_pred             cccccc--ceeecccccc--cceEEEEEcccccccceeccc-c------------cccccccccc--cccccccc--c--
Confidence            566543  111111 111  111223345899999998764 1            4678998766  12222111  0  


Q ss_pred             cccccceecCCCeEEEcCCC
Q 042680          371 MYHSVANLLPDGKVFVGGSN  390 (530)
Q Consensus       371 ~yHS~a~LLpdGrVlv~GG~  390 (530)
                      ..-.....-|||+.+++||.
T Consensus       266 ~~i~~v~~s~~g~~l~s~s~  285 (337)
T d1gxra_         266 SCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEET
T ss_pred             cccceEEECCCCCEEEEEeC
Confidence            01112234589999999875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.10  E-value=3.3  Score=35.83  Aligned_cols=59  Identities=12%  Similarity=0.147  Sum_probs=34.5

Q ss_pred             eeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680          315 DGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND  391 (530)
Q Consensus       315 ~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~  391 (530)
                      ++...|+|+.++.|+.+ |            .+.+||..+.  +....+.... ..  -.....-|||+.+++||.+
T Consensus       252 ~~~~~~~~~~l~s~~~d-g------------~i~iwd~~~~--~~~~~~~~h~-~~--V~~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         252 GVLFHSGGKFILSCADD-K------------TLRVWDYKNK--RCMKTLNAHE-HF--VTSLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             EEEECSSSSCEEEEETT-T------------EEEEECCTTS--CCCEEEECCS-SC--EEEEEECSSSSCEEEEETT
T ss_pred             EEEECCCCCEEEEEECC-C------------eEEEEECCCC--cEEEEEcCCC-CC--EEEEEEcCCCCEEEEEeCC
Confidence            34556899999998865 1            5778998765  1222221100 00  1112245899999998853

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=2.3  Score=37.55  Aligned_cols=140  Identities=19%  Similarity=0.132  Sum_probs=75.6

Q ss_pred             eEEEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcc
Q 042680          197 FVYLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGL  274 (530)
Q Consensus       197 ~~~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~  274 (530)
                      ......+|+.++.|+.  ...+||..+++..+.+.   + ...    ....+-           .+++.+++|+.+    
T Consensus       180 ~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~---~-~~~----~v~~~~-----------~~~~~l~s~s~d----  236 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT---G-HQS----LTSGME-----------LKDNILVSGNAD----  236 (342)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC---C-CCS----CEEEEE-----------EETTEEEEEETT----
T ss_pred             cccccCCCCEEEEEeCCCeEEEeecccceeeeEec---c-ccc----ceeEEe-----------cCCCEEEEEcCC----
Confidence            3345568888888764  57899999887653321   1 111    111111           245677887754    


Q ss_pred             ccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          275 YLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       275 ~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                   ..+..+|...... .....-..........+-++++.+++|+.+ |            ++.+||.++
T Consensus       237 -------------~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~s~D-g------------~i~iwd~~t  289 (342)
T d2ovrb2         237 -------------STVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDD-G------------TVKLWDLKT  289 (342)
T ss_dssp             -------------SCEEEEETTTCCE-EEEECSTTSCSSCEEEEEECSSEEEEEETT-S------------EEEEEETTT
T ss_pred             -------------CEEEEEecccccc-cccccccceeeeceeecccCCCeeEEEcCC-C------------EEEEEECCC
Confidence                         1245677653111 111111122222222334689999988865 2            578999987


Q ss_pred             CCCCceE-EecCCCCCCccccc----ceecCCCeEEEcCCCC
Q 042680          355 PEGQRFA-ELAPTDIPRMYHSV----ANLLPDGKVFVGGSND  391 (530)
Q Consensus       355 ~~g~~Wt-~la~~~~~R~yHS~----a~LLpdGrVlv~GG~~  391 (530)
                      .   +.. .+.....  ..|..    ...-|||+++++|+..
T Consensus       290 g---~~i~~~~~~~~--~~~~~~v~~v~~s~~~~~la~g~~d  326 (342)
T d2ovrb2         290 G---EFIRNLVTLES--GGSGGVVWRIRASNTKLVCAVGSRN  326 (342)
T ss_dssp             C---CEEEEEEECTT--GGGTCEEEEEEECSSEEEEEEECSS
T ss_pred             C---CEEEEEecccC--CCCCCCEEEEEECCCCCEEEEEeCC
Confidence            6   432 2322111  12321    2235899999999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.55  E-value=4.4  Score=36.08  Aligned_cols=137  Identities=20%  Similarity=0.232  Sum_probs=74.4

Q ss_pred             cceEEEe-cCCcEEEEe--CceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccC
Q 042680          195 YPFVYLL-PDGNVYVFA--NNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVR  271 (530)
Q Consensus       195 Yp~~~ll-p~G~lfv~G--g~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~  271 (530)
                      +|...++ ++|+||+.-  +.....+++...... ..+. .  .-.+|. +-++  .          .++++|++.... 
T Consensus        99 ~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~-~~~~-~--~~~~p~-~i~~--~----------~~g~~~v~~~~~-  160 (260)
T d1rwia_          99 YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPF-T--GLNDPD-GVAV--D----------NSGNVYVTDTDN-  160 (260)
T ss_dssp             SEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE-ECCC-C--SCCSCC-EEEE--C----------TTCCEEEEEGGG-
T ss_pred             ecccccccccceeEeeccccccccccccccceee-eeee-c--ccCCcc-eeee--c----------CCCCEeeecccc-
Confidence            3555444 799999874  345677777665432 2211 1  122332 2222  1          267888874322 


Q ss_pred             CccccccccccccccCCcEEEEEcCCCCCcceec--CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEE
Q 042680          272 EGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE--KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPML  349 (530)
Q Consensus       272 ~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~--~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~ei  349 (530)
                                      ..+.+|++.. +..+...  .+..|+   +.++-++|+|||..-..             ..+..
T Consensus       161 ----------------~~i~~~d~~~-~~~~~~~~~~~~~p~---gi~~d~~g~l~vsd~~~-------------~~i~~  207 (260)
T d1rwia_         161 ----------------NRVVKLEAES-NNQVVLPFTDITAPW---GIAVDEAGTVYVTEHNT-------------NQVVK  207 (260)
T ss_dssp             ----------------TEEEEECTTT-CCEEECCCSSCCSEE---EEEECTTCCEEEEETTT-------------TEEEE
T ss_pred             ----------------cccccccccc-ceeeeeeccccCCCc---cceeeeeeeeeeeecCC-------------CEEEE
Confidence                            2356777653 3333332  344432   33445899999976322             25678


Q ss_pred             ecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEc
Q 042680          350 YRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVG  387 (530)
Q Consensus       350 YDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~  387 (530)
                      |+|...   ..+........+ -++.++ -+||.|||+
T Consensus       208 ~~~~~~---~~~~~~~~~~~~-P~~i~~-d~~g~l~va  240 (260)
T d1rwia_         208 LLAGST---TSTVLPFTGLNT-PLAVAV-DSDRTVYVA  240 (260)
T ss_dssp             ECTTCS---CCEECCCCSCCC-EEEEEE-CTTCCEEEE
T ss_pred             EeCCCC---eEEEEccCCCCC-eEEEEE-eCCCCEEEE
Confidence            999877   555443222211 134444 478999998

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.50  E-value=5  Score=36.61  Aligned_cols=27  Identities=15%  Similarity=0.247  Sum_probs=20.5

Q ss_pred             cCCcEEEEeC--ceEEEEeCCCCeEEEEc
Q 042680          202 PDGNVYVFAN--NRSVVHDPKANKIIREF  228 (530)
Q Consensus       202 p~G~lfv~Gg--~~~e~yDp~tn~w~~~~  228 (530)
                      .+|++++.|+  ....+||..+++....+
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  243 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERL  243 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceee
Confidence            4888888876  45789999988776444

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.48  E-value=1.1  Score=40.02  Aligned_cols=101  Identities=14%  Similarity=0.096  Sum_probs=54.1

Q ss_pred             EecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680          200 LLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG  277 (530)
Q Consensus       200 llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~  277 (530)
                      ..++|+.++.|+.  ...+||..++........+.+.  ..+.  .++  ...        .+++.+++||.+       
T Consensus       187 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h--~~~v--~~l--~~s--------~~~~~l~sgs~d-------  245 (299)
T d1nr0a2         187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH--TAKV--ACV--SWS--------PDNVRLATGSLD-------  245 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC--SSCE--EEE--EEC--------TTSSEEEEEETT-------
T ss_pred             ccccccccccccccccccccccccccccccccccccc--cccc--ccc--ccc--------ccccceEEEcCC-------
Confidence            4578998888763  6889999888755223232211  1111  111  111        267888888764       


Q ss_pred             cccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCC
Q 042680          278 EEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGAD  331 (530)
Q Consensus       278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~  331 (530)
                                ..+..+|+......-..............+.-++|+.++.+|.+
T Consensus       246 ----------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D  289 (299)
T d1nr0a2         246 ----------NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD  289 (299)
T ss_dssp             ----------SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETT
T ss_pred             ----------CEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCC
Confidence                      13567787642221111122222222333445788888888865

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.85  E-value=1.3  Score=40.05  Aligned_cols=134  Identities=11%  Similarity=0.086  Sum_probs=74.4

Q ss_pred             ec-CCcEEEEeC-ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc
Q 042680          201 LP-DGNVYVFAN-NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE  278 (530)
Q Consensus       201 lp-~G~lfv~Gg-~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~  278 (530)
                      .| ||++++++. ..+.+||..+++.. .++   ...+..    .....           .+++.+++.|...+      
T Consensus        11 SP~dG~~~a~~~~g~v~v~d~~~~~~~-~~~---~~~~v~----~~~~s-----------pDg~~l~~~~~~~g------   65 (360)
T d1k32a3          11 SPLDGDLIAFVSRGQAFIQDVSGTYVL-KVP---EPLRIR----YVRRG-----------GDTKVAFIHGTREG------   65 (360)
T ss_dssp             EECGGGCEEEEETTEEEEECTTSSBEE-ECS---CCSCEE----EEEEC-----------SSSEEEEEEEETTE------
T ss_pred             cCCCCCEEEEEECCeEEEEECCCCcEE-Ecc---CCCCEE----EEEEC-----------CCCCEEEEEEcCCC------
Confidence            45 899888765 46789999999877 442   112221    12222           26777776654311      


Q ss_pred             ccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCC
Q 042680          279 EEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQ  358 (530)
Q Consensus       279 ~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~  358 (530)
                               ..+.++|...  .+-... ......-.....-|||+.+++++...             ...+||..+.   
T Consensus        66 ---------~~v~v~d~~~--~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~~~-------------~~~~~~~~~~---  117 (360)
T d1k32a3          66 ---------DFLGIYDYRT--GKAEKF-EENLGNVFAMGVDRNGKFAVVANDRF-------------EIMTVDLETG---  117 (360)
T ss_dssp             ---------EEEEEEETTT--CCEEEC-CCCCCSEEEEEECTTSSEEEEEETTS-------------EEEEEETTTC---
T ss_pred             ---------CEEEEEECCC--CcEEEe-eCCCceEEeeeecccccccceecccc-------------cccccccccc---
Confidence                     1245566542  222222 11222223445679999999887641             4678888776   


Q ss_pred             ceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680          359 RFAELAPTDIPRMYHSVANLLPDGKVFVGGS  389 (530)
Q Consensus       359 ~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG  389 (530)
                      +...+-...  .........-|||+.++..+
T Consensus       118 ~~~~~~~~~--~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3         118 KPTVIERSR--EAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             CEEEEEECS--SSCCCCEEECTTSCEEEEEE
T ss_pred             ceeeeeecc--cccccchhhccceeeeeeec
Confidence            443322221  12223355668999888654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=88.61  E-value=7  Score=33.88  Aligned_cols=51  Identities=10%  Similarity=0.088  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCCCcceecCCCCccccceeeeecCCe-EEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680          289 DCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGE-VLIINGADLGSGGWHCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       289 s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~-VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~  355 (530)
                      .+.++|+..  .+-.. ..+......+...-|||+ |||.++.+             .++.+||+++.
T Consensus       225 ~v~v~D~~t--~~~~~-~~~~~~~~~~va~spdg~~l~va~~~~-------------~~i~v~D~~t~  276 (301)
T d1l0qa2         225 TVSMIDTGT--NKITA-RIPVGPDPAGIAVTPDGKKVYVALSFC-------------NTVSVIDTATN  276 (301)
T ss_dssp             EEEEEETTT--TEEEE-EEECCSSEEEEEECTTSSEEEEEETTT-------------TEEEEEETTTT
T ss_pred             eeeeeecCC--CeEEE-EEcCCCCEEEEEEeCCCCEEEEEECCC-------------CeEEEEECCCC
Confidence            466788753  22111 111111223445569997 66776543             16789999988

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=88.43  E-value=0.59  Score=42.29  Aligned_cols=28  Identities=14%  Similarity=0.191  Sum_probs=22.3

Q ss_pred             ecCCcEEEEeC--ceEEEEeCCCCeEEEEc
Q 042680          201 LPDGNVYVFAN--NRSVVHDPKANKIIREF  228 (530)
Q Consensus       201 lp~G~lfv~Gg--~~~e~yDp~tn~w~~~~  228 (530)
                      .++|+.+++++  +...+||.++++..+.+
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~   34 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSC   34 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            45888888887  47889999999987544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.38  E-value=3.2  Score=38.53  Aligned_cols=143  Identities=13%  Similarity=0.212  Sum_probs=76.9

Q ss_pred             ecCCcEEEEe--CceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc
Q 042680          201 LPDGNVYVFA--NNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE  278 (530)
Q Consensus       201 lp~G~lfv~G--g~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~  278 (530)
                      -++|+||+.-  +....+|||.+++....+.+..+    .| .+.++    .        .+|++|||.-.+..      
T Consensus        48 D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~----~p-~gla~----~--------~dG~l~va~~~~~~------  104 (319)
T d2dg1a1          48 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA----NP-AAIKI----H--------KDGRLFVCYLGDFK------  104 (319)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSS----SE-EEEEE----C--------TTSCEEEEECTTSS------
T ss_pred             CCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCC----Ce-eEEEE----C--------CCCCEEEEecCCCc------
Confidence            3689999974  45778899998865533333221    22 12222    1        27899998432100      


Q ss_pred             ccccccccCCcEEEEEcCCCCCccee--cCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCC
Q 042680          279 EEKRFVNALDDCARMVVTSPNPEWKI--EKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPE  356 (530)
Q Consensus       279 ~~~~~~~a~~s~~~~dp~~~~~~W~~--~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~  356 (530)
                             ....+.++++.  ......  +.....+...+.++-++|++|+..-...       ...+.-....+||+.. 
T Consensus       105 -------~~~~i~~~~~~--~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~-------~~~~~g~v~~~~~dg~-  167 (319)
T d2dg1a1         105 -------STGGIFAATEN--GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY-------STNPLGGVYYVSPDFR-  167 (319)
T ss_dssp             -------SCCEEEEECTT--SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB-------TTBCCEEEEEECTTSC-
T ss_pred             -------cceeEEEEcCC--CceeeeeccCCCcccCCcceeEEeccceeecccccc-------cccCcceeEEEecccc-
Confidence                   11223444443  232222  2344444456777889999998643210       1123345678888776 


Q ss_pred             CCceEEe-cCCCCCCcccccceecCCCe-EEEcCC
Q 042680          357 GQRFAEL-APTDIPRMYHSVANLLPDGK-VFVGGS  389 (530)
Q Consensus       357 g~~Wt~l-a~~~~~R~yHS~a~LLpdGr-Vlv~GG  389 (530)
                        ..+.+ ..+..|.   +.+ +-+||+ +|++-.
T Consensus       168 --~~~~~~~~~~~pn---Gia-~s~dg~~lyvad~  196 (319)
T d2dg1a1         168 --TVTPIIQNISVAN---GIA-LSTDEKVLWVTET  196 (319)
T ss_dssp             --CEEEEEEEESSEE---EEE-ECTTSSEEEEEEG
T ss_pred             --eeEEEeeccceee---eee-eccccceEEEecc
Confidence              66543 3333332   233 447885 778743

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.58  E-value=2.9  Score=37.58  Aligned_cols=148  Identities=9%  Similarity=-0.039  Sum_probs=77.6

Q ss_pred             EEecCCcEEEEeC-c---eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcc
Q 042680          199 YLLPDGNVYVFAN-N---RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGL  274 (530)
Q Consensus       199 ~llp~G~lfv~Gg-~---~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~  274 (530)
                      .-.|||+.+++++ .   ...+||..+++.. .+..-+.  ..    ...++   .        .+++.+++++.+    
T Consensus        49 ~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~--~v----~~~~~---s--------pdg~~l~~~~~~----  106 (360)
T d1k32a3          49 RRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLG--NV----FAMGV---D--------RNGKFAVVANDR----  106 (360)
T ss_dssp             EECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCC--SE----EEEEE---C--------TTSSEEEEEETT----
T ss_pred             EECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCc--eE----Eeeee---c--------ccccccceeccc----
Confidence            3467998777654 2   4789999998876 3322111  11    11122   2        267777777654    


Q ss_pred             ccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          275 YLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       275 ~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                   ..+..++... ...+....+.... ..+...-|||+.++..+...+..   ..........+||..+
T Consensus       107 -------------~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~spdg~~la~~~~~~~~~---~~~~~~~~~~v~d~~~  168 (360)
T d1k32a3         107 -------------FEIMTVDLET-GKPTVIERSREAM-ITDFTISDNSRFIAYGFPLKHGE---TDGYVMQAIHVYDMEG  168 (360)
T ss_dssp             -------------SEEEEEETTT-CCEEEEEECSSSC-CCCEEECTTSCEEEEEEEECSST---TCSCCEEEEEEEETTT
T ss_pred             -------------cccccccccc-cceeeeeeccccc-ccchhhccceeeeeeeccccccc---eeeccccceeeecccc
Confidence                         1234556543 1222222333332 23345569999988765432111   0011123567899887


Q ss_pred             CCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCC
Q 042680          355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDN  392 (530)
Q Consensus       355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~  392 (530)
                      .   +-..+..   ..........-|||+.++.++...
T Consensus       169 ~---~~~~~~~---~~~~~~~~~~spdg~~l~~~s~~~  200 (360)
T d1k32a3         169 R---KIFAATT---ENSHDYAPAFDADSKNLYYLSYRS  200 (360)
T ss_dssp             T---EEEECSC---SSSBEEEEEECTTSCEEEEEESCC
T ss_pred             C---ceeeecc---cccccccccccCCCCEEEEEeCCC
Confidence            6   4333221   122223345678999888887543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.42  E-value=8.8  Score=33.66  Aligned_cols=168  Identities=12%  Similarity=0.001  Sum_probs=82.8

Q ss_pred             EEEecCCcEEEEeCceEEEEeCCCCeEEEEccCCCCCCCccCCC-ceEeeccCCCCCCCCCCCCcE---EEEecCccCCc
Q 042680          198 VYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPAT-GTSVLLPLYLPRDTYKPVDAE---VLICGGSVREG  273 (530)
Q Consensus       198 ~~llp~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~-g~svmlpl~~~~~~~~~~~gk---I~v~GG~~~~~  273 (530)
                      +...+||+.++.++.....+|+.+++-.+.++- ....+..... ....+.+...       ..+.   ...........
T Consensus       140 ~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  211 (337)
T d1pbyb_         140 LAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPI-QSWEAETYAQPDVLAVWNQHE-------SSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             EEECTTSSCEEEESSSEEEEETTTTEEEEEECS-TTTTTTTBCCCBCCCCCCCCT-------TTTEEEEEEEEEBTTSCT
T ss_pred             EEEcCCCCEEEEEcCCcceeeeecCcEEEEeec-CCccccceecCCcceeecccc-------ccceeeeeeeeeeeccce
Confidence            355689988888888888899999987644432 1111111000 0011111110       1111   11122211110


Q ss_pred             cccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680          274 LYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP  352 (530)
Q Consensus       274 ~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP  352 (530)
                      ..       .......+..++...  ..+... ..+..+.......-++++.+.... .              ...+||.
T Consensus       212 ~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~i~v~d~  267 (337)
T d1pbyb_         212 AD-------PTAYRTGLLTMDLET--GEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-N--------------VLESFDL  267 (337)
T ss_dssp             TS-------GGGEEEEEEEEETTT--CCEEEEEEEECSSCEEEEEECTTSSEEEEEE-S--------------EEEEEET
T ss_pred             ee-------ecccCccEEEEEcCC--CcEEEEEecCCCcceEEEEecccceEEEEcc-c--------------cEEEEEC
Confidence            00       001122355566542  444443 334444444445557777665432 1              4678999


Q ss_pred             CCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCC
Q 042680          353 NAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLA  416 (530)
Q Consensus       353 ~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~  416 (530)
                      ++.   +....  .......++.+ +-|||+.+.+|+..             .+|-+|+...+.
T Consensus       268 ~~~---~~~~~--~~~~~~~~~~~-~s~dG~~l~v~~~~-------------~~i~v~D~~t~~  312 (337)
T d1pbyb_         268 EKN---ASIKR--VPLPHSYYSVN-VSTDGSTVWLGGAL-------------GDLAAYDAETLE  312 (337)
T ss_dssp             TTT---EEEEE--EECSSCCCEEE-ECTTSCEEEEESBS-------------SEEEEEETTTCC
T ss_pred             CCC---cEEEE--EcCCCCEEEEE-ECCCCCEEEEEeCC-------------CcEEEEECCCCc
Confidence            888   55432  22334445544 45899877666532             247788887764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=85.97  E-value=5.7  Score=36.09  Aligned_cols=111  Identities=14%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             EEEecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680          198 VYLLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY  275 (530)
Q Consensus       198 ~~llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~  275 (530)
                      ..+.+||+||+..-  ....++||.....  .+..+++    .| .+.+.    .        .++++||++-.. +   
T Consensus        33 iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~~~~~~----~~-~gla~----~--------~dG~l~v~~~~~-~---   89 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHATVEG----KV-SGLAF----T--------SNGDLVATGWNA-D---   89 (302)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCCEE--EEEECSS----EE-EEEEE----C--------TTSCEEEEEECT-T---
T ss_pred             EEECCCCCEEEEeCCCCEEEEEeCCCCEE--EEEcCCC----Cc-ceEEE----c--------CCCCeEEEecCC-c---
Confidence            46778999999854  5678889887643  3444442    22 12221    2        278999986322 1   


Q ss_pred             cccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680          276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA  354 (530)
Q Consensus       276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t  354 (530)
                                   .+.+++......+-+.. .++..+...+.+..+||++|+.....             .....+|+..
T Consensus        90 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~-------------~~i~~~~~~~  143 (302)
T d2p4oa1          90 -------------SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYR-------------GAIWLIDVVQ  143 (302)
T ss_dssp             -------------SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTT-------------TEEEEEETTT
T ss_pred             -------------eEEEEEecccccceeeccccCCccccceeEEccCCCEEeecccc-------------ccceeeeccC
Confidence                         12233332212222222 44544545566677999999975432             1455677777


Q ss_pred             CCC
Q 042680          355 PEG  357 (530)
Q Consensus       355 ~~g  357 (530)
                      ...
T Consensus       144 ~~~  146 (302)
T d2p4oa1         144 PSG  146 (302)
T ss_dssp             TEE
T ss_pred             Ccc
Confidence            633

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=85.81  E-value=12  Score=33.70  Aligned_cols=27  Identities=11%  Similarity=-0.113  Sum_probs=19.4

Q ss_pred             EEecCCcEEEEeC--ceEEEEeCCCCeEE
Q 042680          199 YLLPDGNVYVFAN--NRSVVHDPKANKII  225 (530)
Q Consensus       199 ~llp~G~lfv~Gg--~~~e~yDp~tn~w~  225 (530)
                      ...++|++|+.-.  .....+|+.++.-.
T Consensus       119 ~~~~~g~~~v~~~~~~~i~~~~~~~~~~~  147 (302)
T d2p4oa1         119 TPLSDTQYLTADSYRGAIWLIDVVQPSGS  147 (302)
T ss_dssp             EESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEccCCCEEeeccccccceeeeccCCcce
Confidence            3457999998743  46778899987643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=83.36  E-value=2  Score=38.50  Aligned_cols=64  Identities=13%  Similarity=0.053  Sum_probs=42.8

Q ss_pred             CcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEE-EEcCCCCCCCCc
Q 042680          260 DAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVL-IINGADLGSGGW  337 (530)
Q Consensus       260 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~Vl-ViGG~~~g~~g~  337 (530)
                      +++.+++|+.+                 +++..||+..  .+-... .++..+.-.+.+.-|||+.+ |.+...      
T Consensus         7 ~~~~l~~~~~~-----------------~~v~v~D~~t--~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~------   61 (346)
T d1jmxb_           7 GHEYMIVTNYP-----------------NNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY------   61 (346)
T ss_dssp             TCEEEEEEETT-----------------TEEEEEETTT--TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT------
T ss_pred             CCcEEEEEcCC-----------------CEEEEEECCC--CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCC------
Confidence            78999998764                 2467899863  433333 57766655676777999865 544332      


Q ss_pred             ccCCCCCcccEEecCCCC
Q 042680          338 HCADKPSLKPMLYRPNAP  355 (530)
Q Consensus       338 ~~~~~p~~~~eiYDP~t~  355 (530)
                             ..+.+||..+.
T Consensus        62 -------~~v~~~d~~t~   72 (346)
T d1jmxb_          62 -------GDIYGIDLDTC   72 (346)
T ss_dssp             -------TEEEEEETTTT
T ss_pred             -------CcEEEEeCccC
Confidence                   15789999877

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.01  E-value=11  Score=34.00  Aligned_cols=111  Identities=13%  Similarity=-0.007  Sum_probs=57.8

Q ss_pred             EecCCc-EEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680          200 LLPDGN-VYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL  276 (530)
Q Consensus       200 llp~G~-lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~  276 (530)
                      ..++++ +++.++  ....+||..+.+-........+ ...+ .  .++  ...|       ..++++++||.+      
T Consensus       167 ~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~-~~~~-v--~~v--~~~p-------d~~~~l~s~~~d------  227 (325)
T d1pgua1         167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK-QGSF-V--RDV--EFSP-------DSGEFVITVGSD------  227 (325)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC-TTCC-E--EEE--EECS-------TTCCEEEEEETT------
T ss_pred             ccccccceEEEeecccccccccccccccceecccccC-CCCc-c--EEe--eecc-------ccceeccccccc------
Confidence            345665 345454  4678899887765434433221 1111 0  111  1122       146888888765      


Q ss_pred             ccccccccccCCcEEEEEcCCCCCcceec-CCCCc--cccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680          277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAP--RTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPN  353 (530)
Q Consensus       277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~--R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~  353 (530)
                                 ..+..||...  .+.... .-+..  ....-++..+||+.++.++.+.             ++.+||..
T Consensus       228 -----------~~i~iwd~~~--~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~-------------~i~iwd~~  281 (325)
T d1pgua1         228 -----------RKISCFDGKS--GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA-------------TIRVWDVT  281 (325)
T ss_dssp             -----------CCEEEEETTT--CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS-------------EEEEEETT
T ss_pred             -----------cceeeeeecc--ccccccccccccccccceeeeeccCCCEEEEEeCCC-------------eEEEEECC
Confidence                       1255677653  222111 11111  1112234458999999988651             57899998


Q ss_pred             CC
Q 042680          354 AP  355 (530)
Q Consensus       354 t~  355 (530)
                      +.
T Consensus       282 ~~  283 (325)
T d1pgua1         282 TS  283 (325)
T ss_dssp             TT
T ss_pred             CC
Confidence            77