Citrus Sinensis ID: 042686
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 596 | 2.2.26 [Sep-21-2011] | |||||||
| O65717 | 716 | Cyclic nucleotide-gated i | yes | no | 0.889 | 0.740 | 0.354 | 1e-85 | |
| Q9SKD7 | 706 | Probable cyclic nucleotid | no | no | 0.798 | 0.674 | 0.356 | 8e-76 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.812 | 0.695 | 0.341 | 1e-75 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.798 | 0.669 | 0.330 | 7e-75 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.793 | 0.633 | 0.330 | 6e-73 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.802 | 0.652 | 0.327 | 1e-69 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.833 | 0.693 | 0.317 | 5e-68 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.845 | 0.669 | 0.304 | 2e-65 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.892 | 0.720 | 0.294 | 5e-65 | |
| Q9SL29 | 678 | Putative cyclic nucleotid | no | no | 0.865 | 0.761 | 0.301 | 8e-60 |
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 209/589 (35%), Positives = 318/589 (53%), Gaps = 59/589 (10%)
Query: 10 KAIARAIRRIKKIKDKE--YIDRLMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDK 67
+A+++ I KI D + ++ R N ++ + A+ LDPLFFY+ ++DD KKC+ DK
Sbjct: 72 EAVSKGIGSTHKILDPQGPFLQR-WNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDK 130
Query: 68 TLGITATVIRSVLDFLKLGHFISHSKLHMEKGNQREKFKAIFKGEGEVPEDPMGRMRKL- 126
+ ITA+V+RS D + H I + + R +F G G + ED ++
Sbjct: 131 KMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSR-----VF-GRGVLVEDKREIAKRYL 184
Query: 127 ---FLIDCLAILPIPQVLVIFLVIFGIRGPG---FSTAMTFFVL-QYSLRVIRTYFLFTH 179
F+ID LA+LP+PQ +VI ++I +RG + F V QY R IR Y L+
Sbjct: 185 SSHFIIDILAVLPLPQ-MVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKE 243
Query: 180 ATRVSGILADATWAIFAFYLLLYLQSGHMFGALWYYYAIEKATECWREAC-KNHTGCSGH 238
TR SGIL + WA AF L LY+ + H+FGA WY ++IE+ T CW++AC +N+ C
Sbjct: 244 VTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISK 303
Query: 239 SYFSCNKSSRDYNFLNDFCRISTGSTTSYSFGIYNDALQSGIVGETDFPKKLIRCLRWGL 298
+ +++ FLN+ C I T +TT + FGI+ DALQSG+V DFP+K C WGL
Sbjct: 304 LLYCDPETAGGNAFLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGL 363
Query: 299 QNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTE 358
QNL S+ GQNL+TS + E FA+ ++ G+VLF FLIG MQT
Sbjct: 364 QNL-----------------SSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTY 406
Query: 359 IARSQKINQKWQVIRQSKHYADISR--DQNVRGQFKKAKREKLTNKHVDVRIDSFISDLS 416
+ + ++ +V R+ R +N+R + ++ ++ K V ++ +S+L
Sbjct: 407 LQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETR-GVDEENLLSNLP 465
Query: 417 LDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTF 476
D +++KRH+ LL +V F+ DE LD L L+PV+++E + I++EGDP++ M F
Sbjct: 466 KDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLF 525
Query: 477 VLQGKTWAYSKKLSITIQRHQDHC---DVRRKELIDWAKNENSYQQLPISDRTVRALTDV 533
+++GK + T + ++ D +EL+ WA + +S LPIS RTVRAL +V
Sbjct: 526 IMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEV 585
Query: 534 EAFTLKADDVKCAL-------------LFRPVSKE----AAALIQLVWR 565
EAF LKADD+K FR S++ AA IQ WR
Sbjct: 586 EAFALKADDLKFVASQFRRLHSKQLRHTFRYYSQQWKTWAACFIQAAWR 634
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Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 596 | ||||||
| 297796139 | 716 | hypothetical protein ARALYDRAFT_918383 [ | 0.889 | 0.740 | 0.365 | 5e-85 | |
| 15238657 | 716 | cyclic nucleotide-gated ion channel 1 [A | 0.889 | 0.740 | 0.354 | 7e-84 | |
| 255545024 | 838 | Cyclic nucleotide-gated ion channel, put | 0.902 | 0.642 | 0.341 | 3e-82 | |
| 6969231 | 708 | cyclic nucleotide-gated calmodulin-bindi | 0.835 | 0.703 | 0.366 | 5e-82 | |
| 356509281 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.840 | 0.700 | 0.363 | 1e-81 | |
| 224118210 | 709 | predicted protein [Populus trichocarpa] | 0.852 | 0.716 | 0.356 | 2e-81 | |
| 356516029 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.855 | 0.713 | 0.361 | 2e-81 | |
| 224135235 | 708 | predicted protein [Populus trichocarpa] | 0.852 | 0.717 | 0.350 | 3e-80 | |
| 356551532 | 718 | PREDICTED: cyclic nucleotide-gated ion c | 0.892 | 0.740 | 0.346 | 1e-79 | |
| 225462733 | 709 | PREDICTED: cyclic nucleotide-gated ion c | 0.835 | 0.702 | 0.365 | 3e-79 |
| >gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 215/589 (36%), Positives = 321/589 (54%), Gaps = 59/589 (10%)
Query: 10 KAIARAIRRIKKIKDKE--YIDRLMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDK 67
+A+++ I KI D + ++ R N ++ + A+ LDPLFFY+ ++DD KKC+ DK
Sbjct: 72 EAVSKGIGSTHKILDPQGPFLQR-WNKIFVLACIIAVSLDPLFFYVPIIDDTKKCLGIDK 130
Query: 68 TLGITATVIRSVLDFLKLGHFISHSKLHMEKGNQREKFKAIFKGEGEVPEDPMGRMRKL- 126
+ ITA+V+RS D + H I + + R +F G G + ED ++
Sbjct: 131 KMEITASVLRSFTDVFYIIHIIFQFRTGFIAPSSR-----VF-GRGVLVEDKQQIAKRYL 184
Query: 127 ---FLIDCLAILPIPQVLVIFLVIFGIRG-PGFSTA--MTFFVL-QYSLRVIRTYFLFTH 179
F+ID LA+LP+PQ +VI +VI +RG P +T + F V QY R IR Y L+
Sbjct: 185 SSHFIIDILAVLPLPQ-MVILIVIPHMRGSPSLNTKNMLKFIVFFQYIPRFIRIYPLYKE 243
Query: 180 ATRVSGILADATWAIFAFYLLLYLQSGHMFGALWYYYAIEKATECWREACKNHTGCSGHS 239
TR SGIL + WA AF L LY+ + H+FGA WY ++IE+ T CW++AC+ S
Sbjct: 244 VTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACEKTNSSCIPS 303
Query: 240 YFSCNKSSRDYN-FLNDFCRISTGSTTSYSFGIYNDALQSGIVGETDFPKKLIRCLRWGL 298
C++ N FLN+ C I T +TT + FGI+ DALQSG+V DFP+K C WGL
Sbjct: 304 LLYCDREIPGGNAFLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGL 363
Query: 299 QNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTE 358
QNL S+ GQNL+TS V E FA+ ++ G+VLF FLIG MQT
Sbjct: 364 QNL-----------------SSLGQNLKTSTYVWEICFAVFISIAGLVLFSFLIGNMQTY 406
Query: 359 IARSQKINQKWQVIRQSKHYADISR--DQNVRGQFKKAKREKLTNKHVDVRIDSFISDLS 416
+ + ++ +V R+ R +N+R + ++ ++ K V ++ +S+L
Sbjct: 407 LQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETR-GVDEENLLSNLP 465
Query: 417 LDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTF 476
D +++KRH+ LL +V F+ DE LD L L+PV+++E + I++EGDP++ M F
Sbjct: 466 KDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLF 525
Query: 477 VLQGKTWAYSKKLSITIQRHQDHC---DVRRKELIDWAKNENSYQQLPISDRTVRALTDV 533
+++GK + T + ++ D +EL+ WA + ++ LPIS RTVRAL +V
Sbjct: 526 IMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPHTSSNLPISTRTVRALMEV 585
Query: 534 EAFTLKADDVK-CALLFRPV-SKE---------------AAALIQLVWR 565
EAF LKADD+K A FR + SK+ AA IQ WR
Sbjct: 586 EAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWR 634
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|6969231|gb|AAF33670.1|AF079872_1 cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 596 | ||||||
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.820 | 0.682 | 0.377 | 2e-79 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.842 | 0.721 | 0.342 | 1.3e-70 | |
| TAIR|locus:2039084 | 706 | CNGC3 "cyclic nucleotide gated | 0.808 | 0.682 | 0.360 | 2.1e-70 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.825 | 0.658 | 0.330 | 9.2e-68 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.833 | 0.678 | 0.329 | 4.1e-65 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.848 | 0.705 | 0.321 | 1.6e-63 | |
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.842 | 0.666 | 0.316 | 2.1e-61 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.825 | 0.666 | 0.308 | 5e-60 | |
| TAIR|locus:2039099 | 621 | CNGC11 "cyclic nucleotide-gate | 0.827 | 0.793 | 0.328 | 2.7e-59 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.848 | 0.746 | 0.308 | 3.3e-59 |
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 201/532 (37%), Positives = 302/532 (56%)
Query: 41 VTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISHSKLHMEKGN 100
+ A+ LDPLFFY+ ++DD KKC+ DK + ITA+V+RS D + H I + +
Sbjct: 104 IIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPS 163
Query: 101 QREKFKAIFKGEGEVPEDPMGRMRKL----FLIDCLAILPIPQVLVIFLVIFGIRGPG-F 155
R +F G G + ED ++ F+ID LA+LP+PQ +VI ++I +RG
Sbjct: 164 SR-----VF-GRGVLVEDKREIAKRYLSSHFIIDILAVLPLPQ-MVILIIIPHMRGSSSL 216
Query: 156 STA-MTFFVL--QYSLRVIRTYFLFTHATRVSGILADATWAIFAFYLLLYLQSGHMFGAL 212
+T M F++ QY R IR Y L+ TR SGIL + WA AF L LY+ + H+FGA
Sbjct: 217 NTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFGAF 276
Query: 213 WYYYAIEKATECWREAC-KNHTGCSGHSYFSCNKSSRDYN-FLNDFCRISTGSTTSYSFG 270
WY ++IE+ T CW++AC +N+ C + C+ + N FLN+ C I T +TT + FG
Sbjct: 277 WYLFSIERETVCWKQACERNNPPCISKLLY-CDPETAGGNAFLNESCPIQTPNTTLFDFG 335
Query: 271 IYNDALQSGIVGETDFPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSND 330
I+ DALQSG+V DFP+K C WGLQNL S+ GQNL+TS
Sbjct: 336 IFLDALQSGVVESQDFPQKFFYCFWWGLQNL-----------------SSLGQNLKTSTY 378
Query: 331 VGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSKHYADISR--DQNVR 388
+ E FA+ ++ G+VLF FLIG MQT + + ++ +V R+ R +N+R
Sbjct: 379 IWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLR 438
Query: 389 GQFKKAKREKLTNKHVDVRIDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDY 448
+ ++ ++ K V ++ +S+L D +++KRH+ LL +V F+ DE LD
Sbjct: 439 KRIRRYEQYKWQETR-GVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDA 497
Query: 449 LFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHC---DVRRK 505
L L+PV+++E + I++EGDP++ M F+++GK + T + ++ D +
Sbjct: 498 LCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGE 557
Query: 506 ELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVK-CALLFRPV-SKE 555
EL+ WA + +S LPIS RTVRAL +VEAF LKADD+K A FR + SK+
Sbjct: 558 ELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQ 609
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | scaffold_801783.1 | annotation not avaliable (716 aa) | ||||||
(Arabidopsis lyrata) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 596 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 2e-05 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 15/109 (13%)
Query: 438 FQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQ 497
F D+ L+ L L+ F VII++GDP + + VL G ++ ++
Sbjct: 2 FSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGS-----------VEVYK 50
Query: 498 DHCDVRRKELIDWAKN----ENSYQQLPISDRTVRALTDVEAFTLKADD 542
D R + + E + TVRALTD E L D
Sbjct: 51 LDEDGREQIVGFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSD 99
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In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 596 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.45 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.31 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.3 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.25 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.25 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.24 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.22 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.15 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.14 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.13 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.13 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.11 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.09 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.05 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.04 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 98.9 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 98.8 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 98.79 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 98.77 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.72 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 98.64 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 98.5 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.03 | |
| PF08412 | 77 | Ion_trans_N: Ion transport protein N-terminal; Int | 97.99 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 97.94 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 97.86 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.8 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.41 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 96.95 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 96.7 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 96.62 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 96.38 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 96.33 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 95.98 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 94.84 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 93.71 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 93.4 | |
| KOG2302 | 1956 | consensus T-type voltage-gated Ca2+ channel, pore- | 93.13 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 90.89 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 90.42 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 89.92 | |
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 84.69 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-87 Score=738.65 Aligned_cols=481 Identities=31% Similarity=0.511 Sum_probs=425.4
Q ss_pred hcccceeCCCChhHHHHHHHHHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHHhhcccc
Q 042686 16 IRRIKKIKDKEYIDRLMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISHSKLH 95 (596)
Q Consensus 16 ~~~~~~I~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~ 95 (596)
.....+|+|+|++++.||.+++++++|+++++|++++||..+++.+| .|......++++|.++|++|++||+++|+||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 34445999999999999999999999999999999999999988888 8888888999999999999999999999999
Q ss_pred cccCcchhhhhhcccCCCccccChhHHhh----hhhhhhhhhccchhhhhhhhhhhccCC-CCCchhHHHHHHHHHHHHH
Q 042686 96 MEKGNQREKFKAIFKGEGEVPEDPMGRMR----KLFLIDCLAILPIPQVLVIFLVIFGIR-GPGFSTAMTFFVLQYSLRV 170 (596)
Q Consensus 96 y~~~~~~~~~~~~~~~~g~~V~d~~~Ia~----~~F~lDlls~lP~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~rl~Rl 170 (596)
|+++++ -++|.||++||. +||++|++|++|+++++. |.++.... ..+......++.++|++||
T Consensus 142 yv~~~s-----------~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~-~~~~~~~~~~~~~~~l~~il~~~rL~Rl 209 (727)
T KOG0498|consen 142 YVDPSS-----------YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVV-LVVIGSTSLALESTILVGILLLQRLPRL 209 (727)
T ss_pred EECCCC-----------ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhhee-eeeecccchhhhHHHHHHHHHHHHHHHH
Confidence 998743 279999999999 999999999999999987 54431000 0111123667889999999
Q ss_pred HHHHHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhhhcCCCCCCccccccCCCCCCC
Q 042686 171 IRTYFLFTHATRVSGILADATWAIFAFYLLLYLQSGHMFGALWYYYAIEKATECWREACKNHTGCSGHSYFSCNKSSRDY 250 (596)
Q Consensus 171 ~Rl~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~Wy~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 250 (596)
.|++++++++++..+++.+++|++.+++++.+++++||.||+||++|.++.++||.++
T Consensus 210 ~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~---------------------- 267 (727)
T KOG0498|consen 210 RRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA---------------------- 267 (727)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc----------------------
Confidence 9999999999999999999999998899999999999999999999999988887654
Q ss_pred ccccccccccCCCCCccccccchhhhccCccCCCChhHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCC
Q 042686 251 NFLNDFCRISTGSTTSYSFGIYNDALQSGIVGETDFPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSND 330 (596)
Q Consensus 251 sW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~ 330 (596)
+|+...+...+..+..|+||++ ++..+|++|+||+++|| ||+|||+++|+|
T Consensus 268 tw~~~l~~~~~~~~~~~~fg~~------------s~~~kY~~aLyw~l~tL-----------------stvG~g~~~s~~ 318 (727)
T KOG0498|consen 268 TWLGSLGRLLSCYNLSFTFGIY------------SLALKYVYALYWGLSTL-----------------STVGYGLVHANN 318 (727)
T ss_pred ccccccccccccCcccccccch------------hHHHHHHHHHHHHhhHh-----------------hhccCCccCCCC
Confidence 2332211000001223556644 45569999999999999 999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-cc-cccCCCHhHHHHHHHHHHHHH-hcCCCCCc
Q 042686 331 VGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK-HY-ADISRDQNVRGQFKKAKREKL-TNKHVDVR 407 (596)
Q Consensus 331 ~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~-~~-~~~~lp~~L~~rv~~y~~~~~-~~~~~~~~ 407 (596)
..|++|+|++|++|.++||++||||+++|++.+.+.++++.|++++ +| ++++||++||+||++|++|+| .++|+ |
T Consensus 319 ~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gv--d 396 (727)
T KOG0498|consen 319 MGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGV--D 396 (727)
T ss_pred cHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCc--C
Confidence 9999999999999999999999999999999999999999999999 99 999999999999999999999 77999 9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeee
Q 042686 408 IDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSK 487 (596)
Q Consensus 408 e~~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~ 487 (596)
|+++|++||..||.+|++|+|.+.++++|+|+++|++++++|+.++++..|+|||+|++|||+.++||||.+|.+++...
T Consensus 397 ee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~ 476 (727)
T KOG0498|consen 397 EEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITT 476 (727)
T ss_pred HHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c----ceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch-hH-------
Q 042686 488 K----LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV-SK------- 554 (596)
Q Consensus 488 ~----~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~-~k------- 554 (596)
+ .....+++||+|| ||+..|++. . |+++||+|+|.|+++.|+++||++ +++||++ ++
T Consensus 477 ~~g~~~~~~~L~~Gd~~G---eEl~~~~~~--~-----p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r 546 (727)
T KOG0498|consen 477 DGGGFFVVAILGPGDFFG---EELLTWCLD--L-----PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFR 546 (727)
T ss_pred cCCceEEEEEecCCCccc---hHHHHHHhc--C-----CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHH
Confidence 6 5678889999999 999766653 2 669999999999999999999999 9999876 11
Q ss_pred --------HHHHHHHHHHHHHHhhhhc
Q 042686 555 --------EAAALIQLVWRFKKHKRAN 573 (596)
Q Consensus 555 --------~~~~~~q~~~~~~~~r~~~ 573 (596)
|++..+|..|+++.+|+..
T Consensus 547 ~~s~~~r~~aa~~iq~a~r~~~~~~~~ 573 (727)
T KOG0498|consen 547 YYSHLWRTWAACFIQAAWRRHIKRKGE 573 (727)
T ss_pred HhhhhhhhhhhhhHHHHHHHHHHhhcc
Confidence 9999999999999998743
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 596 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 1e-16 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 2e-18
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 428 GRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSK 487
G +R+V F+N DE LD + LKP +F+E++ +++EGDP+N M F+++G
Sbjct: 4 GSSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRG------- 56
Query: 488 KLSITIQRHQDHCDVRRKEL----------IDWAKNENSYQQLPISDRTVRALTDVEAFT 537
+L R L + WA + S LP S RTV+ALT+VEAF
Sbjct: 57 RLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFA 116
Query: 538 LKADDVKCAL 547
L AD++K
Sbjct: 117 LIADELKFVA 126
|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 596 | |||
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.98 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.96 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.96 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.96 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.85 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.78 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.75 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.71 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.67 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.63 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.62 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.61 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.6 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.59 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.58 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.58 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.58 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.57 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.56 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.56 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.55 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.55 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.54 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.52 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.51 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.51 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.51 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.51 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.51 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.5 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.49 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.49 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.47 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.45 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.44 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.42 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.4 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.39 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.39 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.39 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.37 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.37 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.36 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.35 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.35 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.34 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.33 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.31 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.3 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.3 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.28 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.24 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.2 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.18 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.16 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.15 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.15 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.06 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 98.99 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 98.98 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 98.92 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 98.9 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 98.84 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 98.82 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 98.79 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.67 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.6 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.49 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.39 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.25 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.19 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.16 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.15 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.07 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.04 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.93 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 97.43 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 96.17 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 95.87 |
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-33 Score=293.02 Aligned_cols=180 Identities=18% Similarity=0.197 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042686 288 KKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQ 367 (596)
Q Consensus 288 ~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~ 367 (596)
..|..|+||+++|| ||+||||++|.|..++++++++|+.|.+++++.+|.+++.+.+..++
T Consensus 160 ~~~~~s~y~~~~t~-----------------ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~-- 220 (355)
T 3beh_A 160 GSIPQAMWWAVVTL-----------------STTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR-- 220 (355)
T ss_dssp SSHHHHHHHHHHHH-----------------TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccHHHHHHHHHhhe-----------------eecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 35889999999999 99999999999999999999999999999999999987765431110
Q ss_pred HHHHHHhhccccccCCCHhHHHHHHHHHHHHHhcCCCCCcHHHHHHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHH
Q 042686 368 KWQVIRQSKHYADISRDQNVRGQFKKAKREKLTNKHVDVRIDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLD 447 (596)
Q Consensus 368 ~~~~~~~~~~~~~~~lp~~L~~rv~~y~~~~~~~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~ 447 (596)
+++. .+.+.++++|+|+++++++++
T Consensus 221 ------------------------~~~~-------------------------------~~~~~l~~~~lf~~ls~~~l~ 245 (355)
T 3beh_A 221 ------------------------GDFV-------------------------------RNWQLVAAVPLFQKLGPAVLV 245 (355)
T ss_dssp ------------------------HHHH-------------------------------HHHC-----------------
T ss_pred ------------------------Hhhc-------------------------------ccchhhhcccccccCCHHHHH
Confidence 0000 024568889999999999999
Q ss_pred HHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEE
Q 042686 448 YLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTV 527 (596)
Q Consensus 448 ~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv 527 (596)
+++..++++.|+|||.|+++||+++++|+|.+|.+++...+ ....++|++|| |. ++..+. ++++++
T Consensus 246 ~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~l~~G~~fG----e~---~~l~~~-----~~~~~~ 311 (355)
T 3beh_A 246 EIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFG----EM---ALISGE-----PRSATV 311 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC--eeEECCCCEEe----eh---HHhCCC-----CcceEE
Confidence 99999999999999999999999999999999999887765 34679999999 56 777766 889999
Q ss_pred EEeceEEEEEechHhHhh-hhcCcchhHH
Q 042686 528 RALTDVEAFTLKADDVKC-ALLFRPVSKE 555 (596)
Q Consensus 528 ~A~t~~~l~~L~~~df~~-~~~f~~~~k~ 555 (596)
+|.++|+++.+++++|.+ ..++|++.+.
T Consensus 312 ~A~~~~~l~~i~~~~f~~ll~~~p~~~~~ 340 (355)
T 3beh_A 312 SAATTVSLLSLHSADFQMLCSSSPEIAEI 340 (355)
T ss_dssp -----------------------------
T ss_pred EECccEEEEEEeHHHHHHHHHHCHHHHHH
Confidence 999999999999999999 9999988543
|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
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| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
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| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
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| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
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| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
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| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
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| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
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| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 596 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 3e-10 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 5e-07 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 8e-07 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 1e-06 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 1e-05 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 4e-05 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 6e-05 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 0.002 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 56.1 bits (134), Expect = 3e-10
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 428 GRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAY-- 485
G +R+V F+N DE LD + LKP +F+E++ +++EGDP+N M F+++G+ +
Sbjct: 4 GSSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT 63
Query: 486 -SKKLSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVK 544
+ + D EL+ WA + S LP S RTV+ALT+VEAF L AD++K
Sbjct: 64 DGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELK 123
Query: 545 CAL 547
Sbjct: 124 FVA 126
|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 596 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.96 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.72 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.69 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.68 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.68 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.66 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.66 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.65 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.64 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.59 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.56 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.46 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.44 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.41 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.34 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.31 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.23 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.07 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.07 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 98.89 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.66 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 96.65 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 91.13 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=3.8e-29 Score=239.02 Aligned_cols=182 Identities=18% Similarity=0.153 Sum_probs=167.3
Q ss_pred HHHHHHHHHHhhc-cc-cccCCCHhHHHHHHHHHHHHHhcCCCCCcHHHHHHhcCHHHHHHHHHHHHHHHhhcchhhccc
Q 042686 364 KINQKWQVIRQSK-HY-ADISRDQNVRGQFKKAKREKLTNKHVDVRIDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNW 441 (596)
Q Consensus 364 ~~~~~~~~~~~~~-~~-~~~~lp~~L~~rv~~y~~~~~~~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l 441 (596)
+...+++++++.+ +| +.+++|++|+.||++||+|.|++++. +++++++.||++|+.++..+++.+.++++|+|+++
T Consensus 2 s~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~--~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMF--DEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCC--CHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccc--cHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 4567799999999 99 99999999999999999999966777 89999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhhhhHhhccccccCCC
Q 042686 442 DEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKELIDWAKNENSYQQLP 521 (596)
Q Consensus 442 ~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~ 521 (596)
++.++..|+..+++..|.|||+|+++||.++.+|||.+|.|++...+.....+++|++|| |. +++.+.
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~~~~l~~G~~fG----e~---~~~~~~----- 147 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFG----EI---CLLTRG----- 147 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCCEEEECTTCEEC----HH---HHHHCS-----
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCcceeeeccceeee----ee---eccCCC-----
Confidence 999999999999999999999999999999999999999999988777777889999999 57 777777
Q ss_pred CcccEEEEeceEEEEEechHhHhh-hhcCcch-hHHHHHH
Q 042686 522 ISDRTVRALTDVEAFTLKADDVKC-ALLFRPV-SKEAAAL 559 (596)
Q Consensus 522 ~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~-~k~~~~~ 559 (596)
+++++++|.++|+++.|++++|.+ +.+||++ .++....
T Consensus 148 ~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~ 187 (193)
T d1q3ea_ 148 RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVA 187 (193)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHH
T ss_pred cccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 899999999999999999999999 9999987 3344333
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|