Citrus Sinensis ID: 042694
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 554 | 2.2.26 [Sep-21-2011] | |||||||
| Q08891 | 616 | Fatty acyl-CoA reductase | yes | no | 0.897 | 0.806 | 0.615 | 0.0 | |
| B9TSP7 | 548 | Fatty acyl-CoA reductase | no | no | 0.768 | 0.777 | 0.430 | 1e-107 | |
| Q9LXN3 | 493 | Probable fatty acyl-CoA r | no | no | 0.774 | 0.870 | 0.368 | 2e-83 | |
| Q39152 | 491 | Fatty acyl-CoA reductase | no | no | 0.754 | 0.851 | 0.371 | 1e-82 | |
| Q9XGY7 | 493 | Alcohol-forming fatty acy | N/A | no | 0.768 | 0.864 | 0.357 | 7e-81 | |
| Q93ZB9 | 493 | Fatty acyl-CoA reductase | no | no | 0.783 | 0.880 | 0.351 | 1e-78 | |
| Q0WRB0 | 496 | Probable fatty acyl-CoA r | no | no | 0.767 | 0.856 | 0.335 | 2e-75 | |
| Q1PEI6 | 496 | Fatty acyl-CoA reductase | no | no | 0.779 | 0.870 | 0.368 | 1e-72 | |
| Q9FMQ9 | 409 | Putative fatty acyl-CoA r | no | no | 0.651 | 0.882 | 0.315 | 7e-56 | |
| A1ZAI5 | 625 | Putative fatty acyl-CoA r | yes | no | 0.767 | 0.68 | 0.254 | 2e-41 |
| >sp|Q08891|FACR2_ARATH Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/559 (61%), Positives = 422/559 (75%), Gaps = 62/559 (11%)
Query: 50 VSSALKERSTV-------TDTAAGSLVLSPNGKGHAEIV--VQDLVPFGGQATSLVELQD 100
VSS LK+R V A +LVLSPNG G + V+ L+PF G S+V +++
Sbjct: 63 VSSLLKDRGQVLIREQSSPAMDAETLVLSPNGNGRTIEINGVKTLMPFSG--ASMVGMKE 120
Query: 101 GIGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIF------------------I 142
G+GI+ FL+ K F +TG+TGFLAKVLIEK+LR PDV KI+ +
Sbjct: 121 GLGIISFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERLKNEV 180
Query: 143 INAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAAN 202
++AELF LK+T+G SY +FML+KL+P GN+C++N+GL+ D A+ IAKEVDVI+NSAAN
Sbjct: 181 LDAELFNTLKETHGASYMSFMLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINSAAN 240
Query: 203 TTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262
TTF+ERYD+A+DINTRGP LM FAK+C KLKLF+QVSTAYVNGQR+G++MEKPF MGD
Sbjct: 241 TTFNERYDVALDINTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFSMGDC 300
Query: 263 IAKENFVSNSRRLIPTLDVENEMKLALE-SKEFSTDGEVAQKMKGLGLE----------- 310
IA ENF+ +R+ LDV+ EMKLALE +++ + + + AQKMK LGLE
Sbjct: 301 IATENFLEGNRK---ALDVDREMKLALEAARKGTQNQDEAQKMKDLGLERARSYGWQDTY 357
Query: 311 --------------RGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTG 356
RGD+PVVIIRPSVIEST K+PF GWMEGNRMMDPI+L YGKGQLTG
Sbjct: 358 VFTKAMGEMMINSTRGDVPVVIIRPSVIESTYKDPFPGWMEGNRMMDPIVLCYGKGQLTG 417
Query: 357 FLVDPNGILDVVPADMVVNATLAAIAQHGMIQ---KPDINVYQIASSVVNPLVFQDLARL 413
FLVDP G+LDVVPADMVVNATLAAIA+HGM +P+INVYQIASS +NPLVF+DLA L
Sbjct: 418 FLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEPEINVYQIASSAINPLVFEDLAEL 477
Query: 414 LHEHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTS-TANLNGKLPQK 472
L+ HY SPC+D+KG PI V MKLF+S++DFS HLWRDA +RSGL S ++++ K+ QK
Sbjct: 478 LYNHYKTSPCMDSKGDPIMVRLMKLFNSVDDFSDHLWRDAQERSGLMSGMSSVDSKMMQK 537
Query: 473 LETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKE 532
L+ IC+KSVEQAKHLA IYEPYTFYGGRFDNSNT+RLME MSE+EKR+FGFDVGSI+W +
Sbjct: 538 LKFICKKSVEQAKHLATIYEPYTFYGGRFDNSNTQRLMENMSEDEKREFGFDVGSINWTD 597
Query: 533 YITNVHIPGLRRHVMKGRG 551
YITNVHIPGLRRHV+KGR
Sbjct: 598 YITNVHIPGLRRHVLKGRA 616
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Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. Involved in the synthesis of the lipid component in sporopollenin. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 2 |
| >sp|B9TSP7|FACR6_ARATH Fatty acyl-CoA reductase 6, chloroplastic OS=Arabidopsis thaliana GN=FAR6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/492 (43%), Positives = 303/492 (61%), Gaps = 66/492 (13%)
Query: 100 DGIGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIF------------------ 141
DGIGIV+FL+ K++ VTGATGFLAKVLIEK+LR ++GKIF
Sbjct: 73 DGIGIVRFLEGKSYLVTGATGFLAKVLIEKLLRESLEIGKIFLLMRSKDQESANKRLYDE 132
Query: 142 IINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAA 201
II+++LFK LKQ +G SY+AFM KL+P +G++ E+NLG++ ++A++I++E+DVI++
Sbjct: 133 IISSDLFKLLKQMHGSSYEAFMKRKLIPVIGDIEEDNLGIKSEIANMISEEIDVIISCGG 192
Query: 202 NTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGD 261
TTFD+RYD A+ +N GP RL+ F K C KLKLF+ STAYV G+R G V+E P C+G+
Sbjct: 193 RTTFDDRYDSALSVNALGPGRLLSFGKGCRKLKLFLHFSTAYVTGKREGTVLETPLCIGE 252
Query: 262 SIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLE----------- 310
+I + L++++E+KLA E+ E +K+K LG E
Sbjct: 253 NITSD------------LNIKSELKLASEAVRKFRGREEIKKLKELGFERAQHYGWENSY 300
Query: 311 --------------RGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTG 356
RG++PVVIIRPS+IES+ EPF GW++G RM DPIIL Y KGQ++
Sbjct: 301 TFTKAIGEAVIHSKRGNLPVVIIRPSIIESSYNEPFPGWIQGTRMADPIILAYAKGQISD 360
Query: 357 FLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQI-ASSVVNPLVFQDLARLLH 415
F DP ++D++P DMV NA +AA+A+HG P+ VY + +SS VNP+ L L H
Sbjct: 361 FWADPQSLMDIIPVDMVANAAIAAMAKHG-CGVPEFKVYNLTSSSHVNPMRAGKLIDLSH 419
Query: 416 EHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTSTANLNGKLPQKLET 475
+H P +T I + MK+ SS+E F++ L I++ + N G L K
Sbjct: 420 QHLCDFPLEET---VIDLEHMKIHSSLEGFTSALSNTIIKQERVID--NEGGGLSTK--- 471
Query: 476 ICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYIT 535
++ + LA YEPYTF+ RFDN+NT L+++MS EEK+ FGFD+ IDW+ YI
Sbjct: 472 -GKRKLNYFVSLAKTYEPYTFFQARFDNTNTTSLIQEMSMEEKKTFGFDIKGIDWEHYIV 530
Query: 536 NVHIPGLRRHVM 547
NVH+PGL++ +
Sbjct: 531 NVHLPGLKKEFL 542
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Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. May be involved in the generation of C30 primary alcohol. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q9LXN3|FACR4_ARATH Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana GN=FAR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (793), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 185/502 (36%), Positives = 277/502 (55%), Gaps = 73/502 (14%)
Query: 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIF------------------IINAE 146
++FL K VTG GFLAKV +EKILR P V K+F ++ +
Sbjct: 6 IQFLHDKTILVTGVPGFLAKVFVEKILRIQPKVKKLFLLLRAADNESAMQRFHSEVLEKD 65
Query: 147 LFKCLKQTYG-KSYQAFMLSKLVPAVGNVCENNLGLE-EDLADVIAKEVDVIVNSAANTT 204
LF+ LK G ++ +AF+ K+VP G++ +NLG++ DL + E+D+IVN AA T
Sbjct: 66 LFRVLKNALGDENLKAFITEKVVPIPGDISVDNLGVKGSDLLQHMWNEIDIIVNVAATTN 125
Query: 205 FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264
FDERYD+ + +NT GP ++ FAK+C K +L + VSTAYV G++ G + EK F MG+++
Sbjct: 126 FDERYDVGLSVNTFGPLNVLNFAKKCVKGQLLLHVSTAYVRGEKSGLLHEKTFHMGETL- 184
Query: 265 KENFVSNSRRLIPTLDVENEMKLALE-----SKEFSTDGEVAQKMKGLGLERG------- 312
+ R+L+ +E EM+L + K+ ++ E++Q MK LG+ R
Sbjct: 185 -----NGHRKLV----IETEMELMKQKLKELQKQNCSEEEISQSMKDLGMSRAKLHGWPN 235
Query: 313 ------------------DIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQL 354
++P+VIIRP++I ST EPF GW+EG R +D +I+ YGKG+L
Sbjct: 236 TYVFTKSMGEMLLGNYRENLPIVIIRPTMITSTFSEPFPGWIEGLRTIDSVIVAYGKGRL 295
Query: 355 TGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLL 414
FL DPN +LD++P DMV NA + A A H + VY + SS NP+ F+ + L
Sbjct: 296 KCFLADPNSVLDLIPVDMVANAMVTAAAIHAG-KLGSQTVYHVGSSCKNPITFEQIHDLA 354
Query: 415 HEHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHL---WRDAIQRSGLTSTAN--LNGKL 469
+++ +P V G I V + S+M FS ++ ++ +Q L NG
Sbjct: 355 ASYFTKNPLVRRDGSSILVSKGTILSTMAQFSFYMTLRYKLPLQMLRLIYVIYPWWNG-- 412
Query: 470 PQKLETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFG---FDVG 526
K + I RK ++ A L D+Y PY + G FD++NTE+L K E K +G FD
Sbjct: 413 -NKYKDIDRK-IKLAMRLVDLYRPYVLFKGIFDDTNTEKLRLKRKEINKEMYGLFEFDPK 470
Query: 527 SIDWKEYITNVHIPGLRRHVMK 548
SIDW++Y+T +HIPGL +V+K
Sbjct: 471 SIDWEDYMTTIHIPGLITYVLK 492
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q39152|FACR1_ARATH Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 190/511 (37%), Positives = 272/511 (53%), Gaps = 93/511 (18%)
Query: 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIF------------------IINAE 146
V+FL K +TGA GFLAKVL+EKILR P+V KI+ ++ +
Sbjct: 6 VQFLGNKTILITGAPGFLAKVLVEKILRLQPNVKKIYLLLRAPDEKSAMQRLRSEVMEID 65
Query: 147 LFKCLKQTYGK-SYQAFMLSKLVPAVGNVCENNLGLEE-DLADVIAKEVDVIVNSAANTT 204
LFK L+ G+ + A M K+VP G++ +NLGL++ DL + E+D+I+N AA T
Sbjct: 66 LFKVLRNNLGEDNLNALMREKIVPVPGDISIDNLGLKDTDLIQRMWSEIDIIINIAATTN 125
Query: 205 FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264
FDERYDI + INT G ++ FAK+C K +L + VSTAY++G++ G ++EKPF MG+++
Sbjct: 126 FDERYDIGLGINTFGALNVLNFAKKCVKGQLLLHVSTAYISGEQPGLLLEKPFKMGETL- 184
Query: 265 KENFVSNSRRLIPTLDVENE-MKLALESKEFSTDGEVAQKMKGLGLERG----------- 312
S R L +++E++ MK L+ + +D E++Q MK G+ R
Sbjct: 185 -----SGDREL--DINIEHDLMKQKLKELQDCSDEEISQTMKDFGMARAKLHGWPNTYVF 237
Query: 313 --------------DIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFL 358
++P+VIIRP++I ST EPF GW+EG + +D +I+ YGKG+L FL
Sbjct: 238 TKAMGEMLMGKYRENLPLVIIRPTMITSTIAEPFPGWIEGLKTLDSVIVAYGKGRLKCFL 297
Query: 359 VDPNGILDVVPADMVVNATLAAIAQHG---MIQKPDINVYQIASSVVNPLVFQDLARLLH 415
D N + D++PADMVVNA +AA H IQ +Y + SS NP+ F L
Sbjct: 298 ADSNSVFDLIPADMVVNAMVAAATAHSGDTGIQA----IYHVGSSCKNPVTFGQLHDFTA 353
Query: 416 EHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTSTANLNGKLP-QKLE 474
+++ P + G PI V + S+M FS ++ L KLP Q L
Sbjct: 354 RYFAKRPLIGRNGSPIIVVKGTILSTMAQFSLYM--------------TLRYKLPLQILR 399
Query: 475 TI--------------CRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKR- 519
I + ++ A L ++Y+PY + G FD+ NTERL K E K
Sbjct: 400 LINIVYPWSHGDNYSDLSRKIKLAMRLVELYQPYLLFKGIFDDLNTERLRMKRKENIKEL 459
Query: 520 --KFGFDVGSIDWKEYITNVHIPGLRRHVMK 548
F FD SIDW YITN HIPGL HV+K
Sbjct: 460 DGSFEFDPKSIDWDNYITNTHIPGLITHVLK 490
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Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q9XGY7|FAR_SIMCH Alcohol-forming fatty acyl-CoA reductase OS=Simmondsia chinensis PE=1 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 181/506 (35%), Positives = 275/506 (54%), Gaps = 80/506 (15%)
Query: 103 GIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII------------------N 144
I++FL K VTGATG LAK+ +EK+LR+ P+V K++++
Sbjct: 6 SILEFLDNKAILVTGATGSLAKIFVEKVLRSQPNVKKLYLLLRATDDETAALRLQNEVFG 65
Query: 145 AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE-DLADVIAKEVDVIVNSAANT 203
ELFK LKQ G ++ +F+ K+ G++ +L L++ +L + + +E+DV+VN AA
Sbjct: 66 KELFKVLKQNLGANFYSFVSEKVTVVPGDITGEDLCLKDVNLKEEMWREIDVVVNLAATI 125
Query: 204 TFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSI 263
F ERYD+++ INT G +++FAK+CNKLK+FV VSTAYV+G++ G ++EKP+ MG+S+
Sbjct: 126 NFIERYDVSLLINTYGAKYVLDFAKKCNKLKIFVHVSTAYVSGEKNGLILEKPYYMGESL 185
Query: 264 AKENFVSNSRRLIPTLDVENEMKLALESK------EFSTDGEVAQKMKGLGLER------ 311
N R LD+ E KL +E+K +T+ + MK +G+ER
Sbjct: 186 -------NGRL---GLDINVEKKL-VEAKINELQAAGATEKSIKSTMKDMGIERARHWGW 234
Query: 312 -------------------GDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKG 352
GDIP+ IIRP++I ST KEPF GW+EG R +D + +YYGKG
Sbjct: 235 PNVYVFTKALGEMLLMQYKGDIPLTIIRPTIITSTFKEPFPGWVEGVRTIDNVPVYYGKG 294
Query: 353 QLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLAR 412
+L L P+ I+D++PADMVVNAT+ A+ H + + Y + SS NP+ L
Sbjct: 295 RLRCMLCGPSTIIDLIPADMVVNATIVAMVAHANQRYVEPVTYHVGSSAANPMKLSALPE 354
Query: 413 LLHEHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTSTAN------LN 466
+ H +++ +P ++ P+ V +FSS F +L + + + AN
Sbjct: 355 MAHRYFTKNPWINPDRNPVHVGRAMVFSSFSTFHLYLTLNFLLPLKVLEIANTIFCQWFK 414
Query: 467 GK---LPQKLETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTE--RLMEKMSEEEKRKF 521
GK L +K + R L DIY+PY F+ G FD+ NTE R+ K S E F
Sbjct: 415 GKYMDLKRKTRLLLR--------LVDIYKPYLFFQGIFDDMNTEKLRIAAKESIVEADMF 466
Query: 522 GFDVGSIDWKEYITNVHIPGLRRHVM 547
FD +I+W++Y H PG+ HV+
Sbjct: 467 YFDPRAINWEDYFLKTHFPGVVEHVL 492
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NADPH-dependent alcohol-forming fatty acyl-coenzyme A reductase that catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The recombinant enzyme accepts saturated and mono-unsaturated fatty acyl-CoAs of 16 to 22 carbons. Simmondsia chinensis (taxid: 3999) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 8 EC: 4 |
| >sp|Q93ZB9|FACR3_ARATH Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 175/498 (35%), Positives = 265/498 (53%), Gaps = 64/498 (12%)
Query: 102 IGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIF------------------II 143
+ ++K+L K+ V GA GFLA + +EKILR P+V K++ I+
Sbjct: 8 VSVLKYLDNKSILVVGAAGFLANIFVEKILRVAPNVKKLYLLLRASKGKSATQRFNDEIL 67
Query: 144 NAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE-DLADVIAKEVDVIVNSAAN 202
+LFK LK+ YG + K+ G++C +LGL++ DLA + +VD IVN AA
Sbjct: 68 KKDLFKVLKEKYGPNLNQLTSEKITIVDGDICLEDLGLQDFDLAHEMIHQVDAIVNLAAT 127
Query: 203 TTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262
T FDERYD+A+ INT G ++ FAK+C K+K+ V VSTAYV G++ G +ME P+ MG++
Sbjct: 128 TKFDERYDVALGINTLGALNVLNFAKRCAKVKILVHVSTAYVCGEKSGLIMETPYRMGET 187
Query: 263 IAKENFVSNSRRLIPTLDVENEMKLALES-KEFSTDG----EVAQKMKGLGLERG----- 312
+ LD+ E KL E + G + + MK LGL R
Sbjct: 188 LNGTT----------GLDINYEKKLVQEKLDQLRVIGAAPETITETMKDLGLRRAKMYGW 237
Query: 313 --------------------DIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKG 352
++ +V++RPS+I ST KEPF GW EG R +D + + YGKG
Sbjct: 238 PNTYVFTKAMGEMMVGTKRENLSLVLLRPSIITSTFKEPFPGWTEGIRTIDSLAVGYGKG 297
Query: 353 QLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLAR 412
+LT FL D + + DV+PADMVVN+ L ++A Q+ I Y + SS+ NP+
Sbjct: 298 KLTCFLCDLDAVSDVMPADMVVNSILVSMAAQAGKQEEII--YHVGSSLRNPMKNSKFPE 355
Query: 413 LLHEHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHL-WRDAIQRSGLTSTANLNGKLPQ 471
L + ++S P + +G+ ++V ++++ SSM F ++ R I GL + KL +
Sbjct: 356 LAYRYFSIKPWTNKEGKVVKVGAIEILSSMRSFHRYMTIRYLIALKGLELVNIILCKLFE 415
Query: 472 KLETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEE--EKRKFGFDVGSID 529
K K + L D+Y+PY F+ G FD+SNTE+L + +S+ E F FD +D
Sbjct: 416 KEFQYFNKKINFIFRLVDLYQPYLFFYGIFDDSNTEKLRKMVSKTGVENEMFYFDPKVLD 475
Query: 530 WKEYITNVHIPGLRRHVM 547
W +Y N H+ GL ++V
Sbjct: 476 WDDYFLNTHVIGLLKYVF 493
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Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C24:0 and C26:0. May be unable to use saturated and monounsaturated C16 and C18 acyl-CoA as substrates. Involved in cuticular wax formation. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q0WRB0|FACR5_ARATH Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (726), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/515 (33%), Positives = 265/515 (51%), Gaps = 90/515 (17%)
Query: 102 IGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII------------------ 143
+ V+FL+ K VTGATGFLAKV +EKILR P+V K++++
Sbjct: 3 LNCVQFLRNKTILVTGATGFLAKVFVEKILRVQPNVKKLYLLVRASDNEAATKRLRTEVF 62
Query: 144 NAELFKCLKQTYG-KSYQAFMLSKLVPAVGNVCENNLGLEED-LADVIAKEVDVIVNSAA 201
ELFK L+Q G + + K+V G++ + LG+ + L + + KE+D++VN AA
Sbjct: 63 EKELFKVLRQNLGDEKLNTLLYEKVVSVPGDIATDQLGINDSHLRERMQKEIDIVVNVAA 122
Query: 202 NTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGD 261
T FDERYD+ + INT G ++ FAK+C K++L + VSTAYV G++ G + EKPF M +
Sbjct: 123 TTNFDERYDVGLGINTFGALNVLNFAKKCVKVQLLLHVSTAYVCGEKPGLIPEKPFIMEE 182
Query: 262 SIAKENFVSNSRRLIPTLDVENEM---KLALESKEFSTDGEVAQKMKGLGLERG------ 312
+ N L +++E E+ +L +++ ++ ++ MK LG+ER
Sbjct: 183 -------IRNENGLQLDINLERELMKQRLKELNEQDCSEEDITLSMKELGMERAKLHGWP 235
Query: 313 -------------------DIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQ 353
++P+VIIRP++I ST EPF GW+EG R +D +I+ YGKG
Sbjct: 236 NTYVFTKSMGEMLLGKHKENLPLVIIRPTMITSTLSEPFPGWIEGLRTVDSVIIAYGKGV 295
Query: 354 LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARL 413
L FLVD N + D++P DMV NA + A A+H + VY + SS NP+ F ++ +
Sbjct: 296 LKCFLVDVNSVCDMIPVDMVANAMITAAAKHAGGSGVHM-VYHVGSSHQNPVTFGEIHEI 354
Query: 414 LHEHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTSTANLNGKLPQKL 473
+++ +P G I V ++ +M FS ++ L KLP +L
Sbjct: 355 AVRYFTKNPLRSRNGSLITVSKVRFIPTMALFSLYM--------------TLRYKLPLQL 400
Query: 474 ETIC---------------RKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEE-- 516
+ + +E L ++YEPY + G FD+ NT+ L EE
Sbjct: 401 LKLVDIIYPWRNGDKYGDKNRKIELVMRLVELYEPYVLFKGIFDDRNTKSLCANQKEEEI 460
Query: 517 ---EKRKFGFDVGSIDWKEYITNVHIPGLRRHVMK 548
EK F FD I+W +Y+TN+HI GL HV+K
Sbjct: 461 KNTEKLMFDFDPKGINWGDYLTNIHISGLVTHVLK 495
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q1PEI6|FACR8_ARATH Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana GN=FAR8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 185/502 (36%), Positives = 271/502 (53%), Gaps = 70/502 (13%)
Query: 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII------------------NAE 146
V FL+ K VTGATGFLAKV +EKILR P+V K++++ +
Sbjct: 6 VHFLQNKTILVTGATGFLAKVFVEKILRVQPNVNKLYLVVRASDNEAATKRLRTEAFEKD 65
Query: 147 LFKCLKQTYGKSYQAFMLS-KLVPAVGNVCENNLGLEE-DLADVIAKEVDVIVNSAANTT 204
LFK L+ G +LS K+VP G++ ++LG+++ +L + + KE+D++VN AA T
Sbjct: 66 LFKVLRDNLGDEKLNTLLSEKVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAATTN 125
Query: 205 FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264
FDERYDI + INT G ++ FAK+C K +L + VSTAYV G++ G + EKPF M + I
Sbjct: 126 FDERYDIGLGINTFGALNVLNFAKKCVKAQLLLHVSTAYVCGEKPGLLPEKPFVM-EEIC 184
Query: 265 KENFVSNSRRLIPTLDVENEMKLALES-KEFSTDGEVAQ----KMKGLGLERG------- 312
EN + LD+ E +L + KE + G + MK LG+ER
Sbjct: 185 NENGLQ--------LDINLERELMKQRLKELNEQGCSEEGTTFYMKELGMERAKLHGWPN 236
Query: 313 ------------------DIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQL 354
++P+VIIRP++I ST EPF GW+EG R +D +I+ YGKG L
Sbjct: 237 TYVFTKSMGEMLLGNHKENLPLVIIRPTMITSTLFEPFPGWIEGLRTVDSVIIAYGKGVL 296
Query: 355 TGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLL 414
FLVD N + D++PADMV NA +AA A H K + VYQ+ SS NP+++ ++ +L
Sbjct: 297 KCFLVDVNSVCDMIPADMVANAMIAAAATHAGGSKVHM-VYQVGSSHQNPIIYGEIREIL 355
Query: 415 HEHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHL---WRDAIQRSGLTSTANLNGKLPQ 471
+++ + G I V MKL ++ FS ++ ++ +Q L +
Sbjct: 356 FCYFTKNSLRSRNGSMITVSKMKLIPTLALFSLYMTIRYKLPVQLLKLVDII-YPSREGD 414
Query: 472 KLETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRK-----FGFDVG 526
+ + RK ++ L +YEPY + G FD+ NT+ L K EE+ R F FD
Sbjct: 415 EYKNKNRK-IDMVMRLVKLYEPYVLFKGIFDDRNTKNLCAKQKEEDNRNSENFMFDFDPK 473
Query: 527 SIDWKEYITNVHIPGLRRHVMK 548
I WK+Y+ NVHIPGL HV+K
Sbjct: 474 IIKWKDYLINVHIPGLITHVLK 495
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q9FMQ9|FACR7_ARATH Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana GN=FAR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 223/463 (48%), Gaps = 102/463 (22%)
Query: 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFML 164
V+FL+ + VTGA+GFLAKVL+E+ILR P+V
Sbjct: 6 VQFLENRTILVTGASGFLAKVLVERILRLQPNV--------------------------- 38
Query: 165 SKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLM 224
K + ++V ++ + ++RYD+A+ INT G ++
Sbjct: 39 --------------------------KRLYLLVRASDKKSAEQRYDVALGINTFGAINVL 72
Query: 225 EFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENE 284
FAK+C K KL + VST YV G+R G ++EK F MG+S+ +N V D+ E
Sbjct: 73 NFAKKCVKPKLLLHVSTVYVCGERPGHIVEKHFAMGESLNGKNKV----------DINTE 122
Query: 285 MKLA-LESKEFSTDG----EVAQKMKGLGLERGDI------------------------- 314
+LA +SK+F G E Q MK GL+R +
Sbjct: 123 RRLADQKSKQFKEQGCSEEETEQAMKDFGLKRARLYGWPNTYVFTKAMGEMLLGHYRETM 182
Query: 315 PVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVV 374
P+VIIRP++I ST +PF GW+EG + +D +I++YGKG L FLVD + D++P DMVV
Sbjct: 183 PIVIIRPTIITSTFSDPFPGWIEGLKTVDSVIIFYGKGILKCFLVDQKTVCDIIPVDMVV 242
Query: 375 NATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVP 434
NA +A A H VY + SS NP++++ + ++ ++ SP V G I VP
Sbjct: 243 NAMIAIAADHCH-DSGSHTVYHVGSSNQNPVIYKQIYEMMSRYFMKSPLVGRNGMLI-VP 300
Query: 435 SMKLFSSMEDFSAHL---WRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAKHLADIY 491
+ S++ F + ++ IQ GL S +L+ + L + + A L +Y
Sbjct: 301 KVTRISTLARFRVYTNLRYKLPIQILGLLSVISLSQRDKFALHN---RKFKMAMRLVKLY 357
Query: 492 EPYTFYGGRFDNSNTERLMEKMSEEEKRK-FGFDVGSIDWKEY 533
+PY + G FD+ N E L K ++ K FG + IDW++Y
Sbjct: 358 KPYVLFKGIFDDKNMETLRIKNEAKDMEKLFGTNPKCIDWEDY 400
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|A1ZAI5|FACR1_DROME Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/472 (25%), Positives = 217/472 (45%), Gaps = 47/472 (9%)
Query: 102 IGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-----------------N 144
+ I +F ++ F+TG TGF+ KVL+EK+LR+ P++ I+++ N
Sbjct: 117 VPIAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLTELLN 176
Query: 145 AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTT 204
A LF+ L+Q K LSK++P G++ LG+ E +++ + V V+ +SAA
Sbjct: 177 APLFESLRQEKPKE-----LSKVIPISGDITSEELGISEKDQNLLCRNVSVVFHSAATVK 231
Query: 205 FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGK---VMEKPFCMGD 261
FDE+ +++ IN G RL+E + L + VSTAY N R + P+ D
Sbjct: 232 FDEKLKLSVTINMLGTKRLVELCHRMLSLDALIHVSTAYCNCDRTDVSEVIYAPPYNPDD 291
Query: 262 SIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRP 321
I+ N++ LD + ++ +A+ M L E G++PV I+RP
Sbjct: 292 IISLINWLPED-----ILDQLTPRLIGKRPNTYTFTKALAEHM--LLKEAGNLPVAIVRP 344
Query: 322 SVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAI 381
S++ ++ EPF+GW++ ++ KG + + N + D+VP D+V+N +AA
Sbjct: 345 SIVTASLNEPFAGWVDNFNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDIVINLMIAAA 404
Query: 382 AQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPSM-KLFS 440
+ + ++ +Y + NP+++ + + P P M + +
Sbjct: 405 WRTATRKSNNLLIYNCCTGQRNPIIWSEFVKHAMTSVRKHPLEGCLWYPTGDLRMNRPMN 464
Query: 441 SMEDFSAHLWRDAIQRSGLTSTANLNGKLP--QKLETICRKSVEQAKHLADIYEPYTFYG 498
++ + H I L A + GK P ++ K+VE ++ A
Sbjct: 465 TLNCIAKHFLPAYI----LDGVARIMGKKPFVVNVQNKIAKAVECLEYFAT-------RQ 513
Query: 499 GRFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGR 550
RF + N L+ +S +++ F FDV I+W +Y+ ++ G R + K R
Sbjct: 514 WRFKDDNVHALLHTLSPKDREIFVFDVRHINWDKYVER-YVLGFREFLFKQR 564
|
Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 554 | ||||||
| 224139936 | 610 | predicted protein [Populus trichocarpa] | 0.994 | 0.903 | 0.686 | 0.0 | |
| 224088156 | 611 | predicted protein [Populus trichocarpa] | 0.985 | 0.893 | 0.656 | 0.0 | |
| 225441555 | 584 | PREDICTED: fatty acyl-CoA reductase 2 [V | 0.965 | 0.916 | 0.652 | 0.0 | |
| 297739786 | 632 | unnamed protein product [Vitis vinifera] | 0.965 | 0.846 | 0.652 | 0.0 | |
| 356503040 | 609 | PREDICTED: fatty acyl-CoA reductase 2-li | 0.969 | 0.881 | 0.659 | 0.0 | |
| 168805188 | 535 | male sterility-related protein [Linum us | 0.871 | 0.902 | 0.687 | 0.0 | |
| 356533091 | 536 | PREDICTED: fatty acyl-CoA reductase 2-li | 0.879 | 0.908 | 0.682 | 0.0 | |
| 377823844 | 526 | male sterility protein 2, partial [Lyciu | 0.862 | 0.908 | 0.670 | 0.0 | |
| 297829754 | 616 | hypothetical protein ARALYDRAFT_478549 [ | 0.983 | 0.884 | 0.588 | 0.0 | |
| 15229920 | 616 | fatty acyl-CoA reductase 2 [Arabidopsis | 0.897 | 0.806 | 0.615 | 0.0 |
| >gi|224139936|ref|XP_002323348.1| predicted protein [Populus trichocarpa] gi|222867978|gb|EEF05109.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/609 (68%), Positives = 475/609 (77%), Gaps = 58/609 (9%)
Query: 1 MGALFLNSLSVAPNKFVKAFENNCDLCLLR-RKRSIM-HCQGGG-KTTRSSGVSSALKER 57
MG++FLNS A NK ++ + CD C LR RKR+++ +CQGGG K RSSG S L ER
Sbjct: 1 MGSMFLNSPLPASNKLIRV-SSKCDWCFLRWRKRNVVVYCQGGGGKAIRSSGFPSVLTER 59
Query: 58 STVTDTA--------AGSLVLSPNGKGHAEIVVQDLVPFGG-QATSLVELQDGIGIVKFL 108
S V AGSLVLSPN KG EI V+D VP+GG ++SL+E+QDGIGIVKFL
Sbjct: 60 SAVVSDQEHIASVRDAGSLVLSPNEKGQPEIAVEDFVPYGGPTSSSLLEMQDGIGIVKFL 119
Query: 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIF------------------IINAELFKC 150
+ K F++GATGFLAKVLIEKILRT+PDVGKI+ IINAELFKC
Sbjct: 120 RGKGLFISGATGFLAKVLIEKILRTMPDVGKIYVLIKAESKEAAITRLKNEIINAELFKC 179
Query: 151 LKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYD 210
L+QT+GKSYQ+FML+KLVP VGNVCE+NLGLEEDLAD IA EVD+IVNSAANTTFDERYD
Sbjct: 180 LRQTHGKSYQSFMLNKLVPVVGNVCESNLGLEEDLADKIANEVDIIVNSAANTTFDERYD 239
Query: 211 IAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFV- 269
+AID+NTRG C LM FAK+C KLKLF+QVSTAYVNGQR+G++MEKPF GD IA+EN +
Sbjct: 240 VAIDVNTRGTCHLMSFAKKCPKLKLFLQVSTAYVNGQRQGRIMEKPFLFGDCIARENLII 299
Query: 270 -SNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER----------------- 311
++ R P LD+E+EM LAL+SKE + EVAQKMK LGLER
Sbjct: 300 SESTPRFAPALDIEHEMNLALDSKEAFQENEVAQKMKELGLERARKYGWQDTYVFTKAMG 359
Query: 312 --------GDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNG 363
GDIPVVIIRPSVIESTCKEPF GWMEGNRMMDPI+LYYGKGQLTGFLVDPNG
Sbjct: 360 EMVVDNMRGDIPVVIIRPSVIESTCKEPFPGWMEGNRMMDPIVLYYGKGQLTGFLVDPNG 419
Query: 364 ILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPC 423
+LDVVPADMVVNATLAA+A HGM QKPDINVYQIASSVVNPLVFQDLA LLHEHY++SP
Sbjct: 420 VLDVVPADMVVNATLAAMAWHGMEQKPDINVYQIASSVVNPLVFQDLATLLHEHYNSSPY 479
Query: 424 VDTKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQ 483
+D+ GRPI VPSMKLFSSME+FSAHLWR QRS L A + KL QK E ICRKSVEQ
Sbjct: 480 MDSNGRPIHVPSMKLFSSMEEFSAHLWRYVTQRSRLAGMATSDRKLSQKHENICRKSVEQ 539
Query: 484 AKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLR 543
AK+LA IYEPYTFYGGRFDNSNT++LME+MSE EK FGFDVGSIDW++YITNVHIPGLR
Sbjct: 540 AKYLASIYEPYTFYGGRFDNSNTQKLMERMSENEKGIFGFDVGSIDWRDYITNVHIPGLR 599
Query: 544 RHVMKGRGI 552
RHVMKGRG+
Sbjct: 600 RHVMKGRGM 608
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088156|ref|XP_002308347.1| predicted protein [Populus trichocarpa] gi|222854323|gb|EEE91870.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/615 (65%), Positives = 468/615 (76%), Gaps = 69/615 (11%)
Query: 1 MGALFLNSLSVAPNKFVKAFENNCDLCLLR-RKRSIM-HCQGGG--KTTRSSGVSSALKE 56
MG++FL+S S+APN+ ++ + C C+LR RKR+++ +CQGGG SSG S L E
Sbjct: 1 MGSMFLDSPSLAPNRLIRV-SSKCGWCVLRWRKRNVVVYCQGGGGKAIILSSGFPSVLTE 59
Query: 57 RSTVTDTA--------AGSLVLSPNGKGHAEIVVQDLVPFGG-QATSLVELQDGIGIVKF 107
RS V +GSLVLSPNGKG EI V DLVP GG ++SLVE QDGIGIVKF
Sbjct: 60 RSAVGSDQDHNAAVRDSGSLVLSPNGKGQPEIAVTDLVPCGGPTSSSLVEKQDGIGIVKF 119
Query: 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIF------------------IINAELFK 149
L+ K FF++GATGFLAKVLIEKILRT+PDVGKI+ IINAELFK
Sbjct: 120 LRGKCFFISGATGFLAKVLIEKILRTMPDVGKIYLFIKAKDKEAAIARLKNEIINAELFK 179
Query: 150 CLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTT----- 204
CL++TYG SYQ+FMLSKLVP VGNVCE+NLG EEDLAD IA EVDVI+NSAANTT
Sbjct: 180 CLRETYGVSYQSFMLSKLVPVVGNVCESNLGFEEDLADEIANEVDVIINSAANTTIFYCC 239
Query: 205 ----FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMG 260
+ RYD+AID+NTRG C L+ FAK C KLKLF+QVSTAYVNGQR+G++MEKP C+G
Sbjct: 240 IVTLWKCRYDVAIDVNTRGTCHLVRFAK-CQKLKLFLQVSTAYVNGQRQGRIMEKPLCLG 298
Query: 261 DSIAKEN-FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER-------- 311
D IA+EN VS S LD+EN++KLAL SKE + +VAQKMK LGLER
Sbjct: 299 DCIARENPIVSGS----TALDIENDVKLALNSKEDFQENKVAQKMKDLGLERYGWQDTYV 354
Query: 312 --------------GDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGF 357
GDIPVV+IRPSVIEST KEPF GWMEGNRMMDPI+L YGKGQLTGF
Sbjct: 355 FTKAMREMVVDNMRGDIPVVVIRPSVIESTWKEPFPGWMEGNRMMDPIVLCYGKGQLTGF 414
Query: 358 LVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417
L DPNG+LDVVPADMVVNATLAAIA HGM QK DINVYQIASSVVNPLVFQDLA LL+EH
Sbjct: 415 LADPNGVLDVVPADMVVNATLAAIAWHGMEQKSDINVYQIASSVVNPLVFQDLATLLYEH 474
Query: 418 YSASPCVDTKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTSTANLNGKLPQKLETIC 477
Y++SP +D+ GRPI VPSM+LFSSMEDF HLWRD IQ+S L A+ + KL QK E IC
Sbjct: 475 YNSSPYMDSNGRPIHVPSMQLFSSMEDFFVHLWRDVIQQSRLAEMASSDRKLSQKHENIC 534
Query: 478 RKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNV 537
RKS+EQAK+LA+IYEPYTFYGGRFDNSNT++LME+MSE EK +FGFDVGS+DW++YITNV
Sbjct: 535 RKSLEQAKYLANIYEPYTFYGGRFDNSNTQKLMERMSENEKGEFGFDVGSMDWRDYITNV 594
Query: 538 HIPGLRRHVMKGRGI 552
HI GLRRHVMKGRG+
Sbjct: 595 HISGLRRHVMKGRGM 609
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441555|ref|XP_002276588.1| PREDICTED: fatty acyl-CoA reductase 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/599 (65%), Positives = 458/599 (76%), Gaps = 64/599 (10%)
Query: 1 MGALFLNSLSVAPNKFVKAFENNCDLCLLRRKRSIMHCQGGGKTTRSSGVSSALKERSTV 60
MGALF +S S A + VK F CD L+R++S++HCQ G RSSGVSS L ERS +
Sbjct: 1 MGALFFSSPSFATKRVVK-FSGWCDH--LKRRKSVVHCQTSGNGVRSSGVSSVLSERSML 57
Query: 61 T--DTAAGSLVLSPNGKGHAEIVVQDLVPFGGQA---TSLVELQDGIGIVKFLKAKNFFV 115
D +AGSLVLSPNGK DLVP+G + T VE+ DGIGI FL+ K+F +
Sbjct: 58 ASKDHSAGSLVLSPNGK--------DLVPYGPPSPSTTPFVEMNDGIGIDNFLRGKSFLI 109
Query: 116 TGATGFLAKVLIEKILRTVPDVGKIF------------------IINAELFKCLKQTYGK 157
TGATGFLAKVLIEKILRT PDVGKI+ IINAE+F CL+Q YGK
Sbjct: 110 TGATGFLAKVLIEKILRTEPDVGKIYLLIKAKNQEAAMERLKNEIINAEVFDCLQQAYGK 169
Query: 158 SYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINT 217
SYQAFMLSKLVP G+VC ++LGLE+D A+ IAKEVDVIVNSAANTTFDERYDIAIDINT
Sbjct: 170 SYQAFMLSKLVPVAGDVCGSSLGLEKDFAEAIAKEVDVIVNSAANTTFDERYDIAIDINT 229
Query: 218 RGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSR-RLI 276
+GPC LM FAK C KLKLF+QVSTAYVNGQR+G++MEKPFC+GDSIA+E+ +S + RL+
Sbjct: 230 KGPCHLMNFAKNCKKLKLFLQVSTAYVNGQRQGRIMEKPFCIGDSIARESNISEAPPRLL 289
Query: 277 PTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER------------------------- 311
PTL++E E+KLAL+SKE +AQKMK LGLER
Sbjct: 290 PTLNIEAEIKLALDSKEAFKGSTLAQKMKELGLERAKKHGWQDTYVFTKAMGEMVIDQMR 349
Query: 312 GDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPAD 371
G+IPVVIIRPSVIESTC+EPF GWMEGNRMMDPI+LYYGKGQLTGF+ DPNG+LDVVPAD
Sbjct: 350 GEIPVVIIRPSVIESTCREPFPGWMEGNRMMDPIVLYYGKGQLTGFVADPNGVLDVVPAD 409
Query: 372 MVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPI 431
MVVNATLAA+A+HG K + N+YQIASSVVNPL+FQDL +EH+ +SPC+D KG PI
Sbjct: 410 MVVNATLAAMARHGGSGKAETNIYQIASSVVNPLIFQDLTSHFYEHFKSSPCLDNKGNPI 469
Query: 432 RVPSMKLFSSMEDFSAHLWRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAKHLADIY 491
VP MKLFSS+EDFS+HLWRDAI RSGL++ + GKL +KLE K+V+QAK+LADIY
Sbjct: 470 HVPIMKLFSSIEDFSSHLWRDAILRSGLSAMPSQTGKLLRKLE----KTVKQAKYLADIY 525
Query: 492 EPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGR 550
+PYTFYGGRFDNSNT+RLM+ M EEEK KFGFDVGSIDWK+YI+NVHIPGLRRHVMKGR
Sbjct: 526 QPYTFYGGRFDNSNTQRLMDCMCEEEKSKFGFDVGSIDWKDYISNVHIPGLRRHVMKGR 584
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739786|emb|CBI29968.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/599 (65%), Positives = 458/599 (76%), Gaps = 64/599 (10%)
Query: 1 MGALFLNSLSVAPNKFVKAFENNCDLCLLRRKRSIMHCQGGGKTTRSSGVSSALKERSTV 60
MGALF +S S A + VK F CD L+R++S++HCQ G RSSGVSS L ERS +
Sbjct: 49 MGALFFSSPSFATKRVVK-FSGWCDH--LKRRKSVVHCQTSGNGVRSSGVSSVLSERSML 105
Query: 61 T--DTAAGSLVLSPNGKGHAEIVVQDLVPFGGQA---TSLVELQDGIGIVKFLKAKNFFV 115
D +AGSLVLSPNGK DLVP+G + T VE+ DGIGI FL+ K+F +
Sbjct: 106 ASKDHSAGSLVLSPNGK--------DLVPYGPPSPSTTPFVEMNDGIGIDNFLRGKSFLI 157
Query: 116 TGATGFLAKVLIEKILRTVPDVGKIF------------------IINAELFKCLKQTYGK 157
TGATGFLAKVLIEKILRT PDVGKI+ IINAE+F CL+Q YGK
Sbjct: 158 TGATGFLAKVLIEKILRTEPDVGKIYLLIKAKNQEAAMERLKNEIINAEVFDCLQQAYGK 217
Query: 158 SYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINT 217
SYQAFMLSKLVP G+VC ++LGLE+D A+ IAKEVDVIVNSAANTTFDERYDIAIDINT
Sbjct: 218 SYQAFMLSKLVPVAGDVCGSSLGLEKDFAEAIAKEVDVIVNSAANTTFDERYDIAIDINT 277
Query: 218 RGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSR-RLI 276
+GPC LM FAK C KLKLF+QVSTAYVNGQR+G++MEKPFC+GDSIA+E+ +S + RL+
Sbjct: 278 KGPCHLMNFAKNCKKLKLFLQVSTAYVNGQRQGRIMEKPFCIGDSIARESNISEAPPRLL 337
Query: 277 PTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER------------------------- 311
PTL++E E+KLAL+SKE +AQKMK LGLER
Sbjct: 338 PTLNIEAEIKLALDSKEAFKGSTLAQKMKELGLERAKKHGWQDTYVFTKAMGEMVIDQMR 397
Query: 312 GDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPAD 371
G+IPVVIIRPSVIESTC+EPF GWMEGNRMMDPI+LYYGKGQLTGF+ DPNG+LDVVPAD
Sbjct: 398 GEIPVVIIRPSVIESTCREPFPGWMEGNRMMDPIVLYYGKGQLTGFVADPNGVLDVVPAD 457
Query: 372 MVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPI 431
MVVNATLAA+A+HG K + N+YQIASSVVNPL+FQDL +EH+ +SPC+D KG PI
Sbjct: 458 MVVNATLAAMARHGGSGKAETNIYQIASSVVNPLIFQDLTSHFYEHFKSSPCLDNKGNPI 517
Query: 432 RVPSMKLFSSMEDFSAHLWRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAKHLADIY 491
VP MKLFSS+EDFS+HLWRDAI RSGL++ + GKL +KLE K+V+QAK+LADIY
Sbjct: 518 HVPIMKLFSSIEDFSSHLWRDAILRSGLSAMPSQTGKLLRKLE----KTVKQAKYLADIY 573
Query: 492 EPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGR 550
+PYTFYGGRFDNSNT+RLM+ M EEEK KFGFDVGSIDWK+YI+NVHIPGLRRHVMKGR
Sbjct: 574 QPYTFYGGRFDNSNTQRLMDCMCEEEKSKFGFDVGSIDWKDYISNVHIPGLRRHVMKGR 632
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503040|ref|XP_003520320.1| PREDICTED: fatty acyl-CoA reductase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/591 (65%), Positives = 461/591 (78%), Gaps = 54/591 (9%)
Query: 15 KFVKAFENNCDLCLLRRKRSIMHCQGGGKTTRSS-GVSSALKERSTV--TDTAA------ 65
K + N + C RRK +++CQGGG +SS G+SS L ERS + TD AA
Sbjct: 17 KLIFGVPQNNERCPSRRKACVVYCQGGGNVIKSSSGLSSVLTERSALVGTDHAAAVLMDA 76
Query: 66 GSLVLSPNGKGHAEIVVQDLVPFGGQATSLVELQDGIGIVKFLKAKNFFVTGATGFLAKV 125
GSLVLS NGK AEI+V+DLVP+ G T+L+ ++DGIGIVKFL K FF+TGATGFLAKV
Sbjct: 77 GSLVLSQNGKSQAEILVKDLVPYDG-PTTLIGVEDGIGIVKFLGGKKFFITGATGFLAKV 135
Query: 126 LIEKILRTVPDVGKIF------------------IINAELFKCLKQTYGKSYQAFMLSKL 167
IEKILRT PDVGK++ IIN ELF+CL++ +GKSYQAFMLSKL
Sbjct: 136 FIEKILRTEPDVGKMYLLIKAKNKQAAMERLQNEIINTELFRCLQEIHGKSYQAFMLSKL 195
Query: 168 VPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFA 227
VP VGN+CE+NLGL+E ++DVIA+EVDVIVNSAANTTFDERYD AI+INT GPCRLM A
Sbjct: 196 VPVVGNICEHNLGLDEGISDVIAEEVDVIVNSAANTTFDERYDTAININTIGPCRLMNIA 255
Query: 228 KQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSN-SRRLIPTLDVENEMK 286
K+C KLKLF+ VSTAYVNGQR+G++ME+PF +G+ IA+E ++S S + +PTLD+E E+
Sbjct: 256 KKCKKLKLFLHVSTAYVNGQRQGRIMERPFSIGECIAREKYISEVSPKYLPTLDIEGEIN 315
Query: 287 LALESKEFSTDGEVAQKMKGLGLER-------------------------GDIPVVIIRP 321
L K D +AQKMK +GLER GDIPVV++RP
Sbjct: 316 LVSNYKGDIEDNLLAQKMKEIGLERARRYGWQDTYVFTKAMGEMMIDKLRGDIPVVVMRP 375
Query: 322 SVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAI 381
SVIEST EPF GWMEGNRMMDPI+L YGKGQLTGFLVDPNG+LDVVPADMVVNATLAA+
Sbjct: 376 SVIESTFSEPFPGWMEGNRMMDPIVLCYGKGQLTGFLVDPNGVLDVVPADMVVNATLAAM 435
Query: 382 AQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPSMKLFSS 441
A+HG+ QKPDINVYQIASSVVNPLVFQDLARLL+EHYS+SPC+D+KGRPI+VP MKLFSS
Sbjct: 436 ARHGVSQKPDINVYQIASSVVNPLVFQDLARLLYEHYSSSPCIDSKGRPIQVPLMKLFSS 495
Query: 442 MEDFSAHLWRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAKHLADIYEPYTFYGGRF 501
E+FS HLWRDAIQ+ GLT+ A+ GK+ QKLE +CRKSVEQAK+LA+IYEPYTFYGGRF
Sbjct: 496 TEEFSGHLWRDAIQKRGLTAVASSKGKMSQKLENMCRKSVEQAKYLANIYEPYTFYGGRF 555
Query: 502 DNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGRGI 552
DNSNT+RLME MSE+EKR+FGFDV SIDW +YITNVHIPGLRRHVMKGRG+
Sbjct: 556 DNSNTQRLMESMSEKEKREFGFDVKSIDWNDYITNVHIPGLRRHVMKGRGM 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168805188|gb|ACA28679.1| male sterility-related protein [Linum usitatissimum] gi|168805190|gb|ACA28680.1| male sterility-related protein [Linum usitatissimum] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/532 (68%), Positives = 423/532 (79%), Gaps = 49/532 (9%)
Query: 64 AAGSLVLSPNGKGHAEIVVQDLVPFGGQATSLVELQDGIGIVKFLKAKNFFVTGATGFLA 123
AA SLVLSPNGKG EI V+DL+P G+ TS QDGIGIV+FL+ K FF+TGATGFLA
Sbjct: 3 AASSLVLSPNGKGQPEIAVKDLIPPYGEPTS--SSQDGIGIVRFLRGKGFFITGATGFLA 60
Query: 124 KVLIEKILRTVPDVGKIF------------------IINAELFKCLKQTYGKSYQAFMLS 165
KVLIEKILRT+PD+GKI+ I+NAELF L+QTYGKSY FMLS
Sbjct: 61 KVLIEKILRTMPDIGKIYLLIKAKNKDAAMSRLKTEILNAELFTSLRQTYGKSYHTFMLS 120
Query: 166 KLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLME 225
KLVP G+VC++NLGLE+++AD+IA +VDVIVNSAANTTFDERYD+AIDINTRGP LM
Sbjct: 121 KLVPVAGDVCKSNLGLEQEIADLIADDVDVIVNSAANTTFDERYDVAIDINTRGPSNLMS 180
Query: 226 FAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEM 285
FAK+C KLKLF+QVSTAYVNGQR+G++ME+ F MGD IA+EN SR TLD+E E+
Sbjct: 181 FAKKCEKLKLFLQVSTAYVNGQRQGRIMERAFGMGDCIAEENSNPASRF---TLDIEGEV 237
Query: 286 KLALESKEFSTDGEVAQKMKGLGLER-------------------------GDIPVVIIR 320
KL L+SKE E+A KM+ LGLER G+IPVVI+R
Sbjct: 238 KLVLDSKEAFHPDEIATKMRELGLERARKYGWQDTYVFTKAMGEMVIDNMRGEIPVVILR 297
Query: 321 PSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAA 380
PSVIEST KEPF GWMEGNRMMDPI+LYYGKGQLTGFLVDPNG+LDVVPADMVVNATLAA
Sbjct: 298 PSVIESTYKEPFPGWMEGNRMMDPIVLYYGKGQLTGFLVDPNGVLDVVPADMVVNATLAA 357
Query: 381 IAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPSMKLFS 440
+A+HGM QKP+INVYQIASSVVNPL+F+DLA LL+EHY+ SP +D+ G PI VP MKLFS
Sbjct: 358 MARHGMDQKPEINVYQIASSVVNPLIFKDLATLLYEHYNTSPYMDSNGFPITVPLMKLFS 417
Query: 441 SMEDFSAHLWRDAIQRSGLTST-ANLNGKLPQKLETICRKSVEQAKHLADIYEPYTFYGG 499
SM++FS HLW+D +QR+GLT+ A+ +GKL QK E ICRKSVEQAK+LA+IYEPYTFYGG
Sbjct: 418 SMDEFSDHLWKDVVQRNGLTAAVASSDGKLSQKHEFICRKSVEQAKYLANIYEPYTFYGG 477
Query: 500 RFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGRG 551
RFDNSN E LME MSE EKRKFGFDVGSIDW++YITNVHIPGLRRHVMKGRG
Sbjct: 478 RFDNSNGEGLMEMMSEVEKRKFGFDVGSIDWRDYITNVHIPGLRRHVMKGRG 529
|
Source: Linum usitatissimum Species: Linum usitatissimum Genus: Linum Family: Linaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533091|ref|XP_003535102.1| PREDICTED: fatty acyl-CoA reductase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/532 (68%), Positives = 427/532 (80%), Gaps = 45/532 (8%)
Query: 65 AGSLVLSPNGKGHAEIVVQDLVPFGGQATSLVELQDGIGIVKFLKAKNFFVTGATGFLAK 124
AGSLVLS NGK AEIVV+DLVP+GG T+L+ L+DGIGIVKFL K FF+TGATGFLAK
Sbjct: 3 AGSLVLSQNGKSQAEIVVKDLVPYGG-TTTLIGLEDGIGIVKFLGGKKFFITGATGFLAK 61
Query: 125 VLIEKILRTVPDVGKIF------------------IINAELFKCLKQTYGKSYQAFMLSK 166
V IEKILRT PDVGK++ IIN +LF+CL++ +GKSYQAFMLSK
Sbjct: 62 VFIEKILRTEPDVGKMYLLIKAKNNQAAMERLQNEIINTQLFRCLQEIHGKSYQAFMLSK 121
Query: 167 LVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEF 226
LVP VGN+CE+NLGL+ED+++VIA+EVDV VNSAANTTFDERYD AI+INT GPCRLM
Sbjct: 122 LVPVVGNICEHNLGLDEDISNVIAEEVDVFVNSAANTTFDERYDTAININTIGPCRLMNI 181
Query: 227 AKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSN-SRRLIPTLDVENEM 285
AK+C KLKLF+ VSTAYVNGQ++G++ME+PF +G+ IA+E ++S S + +PTLD+E E+
Sbjct: 182 AKKCKKLKLFLHVSTAYVNGQKQGRIMERPFSIGECIAREKYISEVSPKYLPTLDIEGEI 241
Query: 286 KLALESKEFSTDGEVAQKMKGLGLER-------------------------GDIPVVIIR 320
L K D + QKMK +GLER GDIPVV++R
Sbjct: 242 NLVSNYKGDIEDNLLTQKMKEIGLERARRYGWQDTYVFTKAMGEMMIDKLRGDIPVVVMR 301
Query: 321 PSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAA 380
PSVIEST EPF GWMEGNRMMDPI+L+YGKGQLTGFLVDPNG+LDVVPADMVVNATLAA
Sbjct: 302 PSVIESTFSEPFPGWMEGNRMMDPIVLWYGKGQLTGFLVDPNGVLDVVPADMVVNATLAA 361
Query: 381 IAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPSMKLFS 440
+A+HGM QKPDINVYQIASSVVNPLVFQDLARLL+EHYS+SPC+D+ GRPI+VP MK FS
Sbjct: 362 MARHGMNQKPDINVYQIASSVVNPLVFQDLARLLYEHYSSSPCIDSMGRPIQVPLMKFFS 421
Query: 441 SMEDFSAHLWRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAKHLADIYEPYTFYGGR 500
S E+FS HLWRDAIQ+ G+T+ A+ K+ QKLE +CRKSVEQAK+LA+IYEPYTFYGGR
Sbjct: 422 STEEFSGHLWRDAIQKRGITAMASSKAKMSQKLENMCRKSVEQAKYLANIYEPYTFYGGR 481
Query: 501 FDNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGRGI 552
FDNSNT+RLME MSEEEKR+F FDV SIDW +YITNVHIPGLRRHVMKGRG+
Sbjct: 482 FDNSNTQRLMESMSEEEKREFDFDVKSIDWNDYITNVHIPGLRRHVMKGRGM 533
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|377823844|gb|AFB77197.1| male sterility protein 2, partial [Lycium barbarum] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/528 (67%), Positives = 413/528 (78%), Gaps = 50/528 (9%)
Query: 68 LVLSPNGKGHAEIVVQDLVPFGGQATSLVELQDGIGIVKFLKAKNFFVTGATGFLAKVLI 127
LVLSPNG AEI V+DLVP+G DGIGI KFL+ K F +TGATGFL KVLI
Sbjct: 1 LVLSPNGSSQAEIKVKDLVPYGQSKHD----DDGIGITKFLRGKAFLITGATGFLGKVLI 56
Query: 128 EKILRTVPDVGKIFII------------------NAELFKCLKQTYGKSYQAFMLSKLVP 169
EKILRT PDV KIFI+ NA++F LKQ +GKSYQ FMLSKL+P
Sbjct: 57 EKILRTAPDVNKIFILIKAKNKQVAMQRLKNEILNADIFNRLKQVHGKSYQTFMLSKLLP 116
Query: 170 AVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQ 229
VGNVCE+NLG++ED A+++AKEVDVIVNSAANTTFDERYDIA+DINT GP RLM FAKQ
Sbjct: 117 VVGNVCESNLGIDEDTANMMAKEVDVIVNSAANTTFDERYDIALDINTGGPSRLMNFAKQ 176
Query: 230 CNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLAL 289
C+ LKLF+QVSTAYVNGQR+G++MEKPFC+GDSIA+E NS P+L+VE+E+KL L
Sbjct: 177 CHNLKLFLQVSTAYVNGQRQGRIMEKPFCIGDSIAREKVDHNS---FPSLNVEDEIKLVL 233
Query: 290 ESKEFSTDGEVAQKMKGLGLERG-------------------------DIPVVIIRPSVI 324
+SK+ D VAQKMK +GL+R DIPVVIIRPSVI
Sbjct: 234 DSKQALEDNSVAQKMKEIGLQRANKFGWQDTYVFTKAMGEMMIDTMRSDIPVVIIRPSVI 293
Query: 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQH 384
EST +EPF GWMEGNRMMDPIIL+YGKGQLTGFLVDPNG+LDVVPADMVVNATLAAIA+H
Sbjct: 294 ESTYREPFPGWMEGNRMMDPIILHYGKGQLTGFLVDPNGVLDVVPADMVVNATLAAIAKH 353
Query: 385 GMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPSMKLFSSMED 444
G KP N+YQ+ASSVVNPLVF+DLA LL +H+++SP +D+KGRPI VP MKL +SMED
Sbjct: 354 GAAGKPGSNIYQVASSVVNPLVFKDLATLLFDHFNSSPYIDSKGRPIHVPRMKLLNSMED 413
Query: 445 FSAHLWRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAKHLADIYEPYTFYGGRFDNS 504
S HLW+DAI RSGLT TA+ NGKL +KLE ICRKSVEQAK+LA IYEPYTFYGGRFDNS
Sbjct: 414 LSFHLWQDAINRSGLTDTADPNGKLSRKLENICRKSVEQAKYLAHIYEPYTFYGGRFDNS 473
Query: 505 NTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGRGI 552
NT+ LME MS+EE+ +FGFDV +IDWK+YI+NVHIPGLR++VMKGRG+
Sbjct: 474 NTQWLMECMSKEERWQFGFDVENIDWKDYISNVHIPGLRKYVMKGRGL 521
|
Source: Lycium barbarum Species: Lycium barbarum Genus: Lycium Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829754|ref|XP_002882759.1| hypothetical protein ARALYDRAFT_478549 [Arabidopsis lyrata subsp. lyrata] gi|297328599|gb|EFH59018.1| hypothetical protein ARALYDRAFT_478549 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/622 (58%), Positives = 453/622 (72%), Gaps = 77/622 (12%)
Query: 1 MGALFLNSLS----VAPNKFVKAFENNCDL-CLLRRKRSI--MHCQ-GGGKTTRSSG--- 49
M ALFL+S S VA NK + N CD L+R K+ + C+ GGG R+S
Sbjct: 1 MEALFLSSSSSSSIVASNKLAR-LHNRCDWSTLVRDKKRVGPTWCRVGGGDGGRNSNAER 59
Query: 50 ---VSSALKERSTV-------TDTAAGSLVLSPNGKGHAEIV--VQDLVPFGGQATSLVE 97
VSS LK+R V A +LVLSPNG G + V+ L+PF G A +V
Sbjct: 60 PIRVSSLLKDRGQVLIREQSSPAMDAETLVLSPNGNGRTIEINGVKTLMPFSGAA--MVG 117
Query: 98 LQDGIGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIF---------------- 141
+++G+GI+ FL+ K F +TG+TGFLAKVLIEK+LR PDV KI+
Sbjct: 118 MKEGLGIISFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKNKEAAIERLK 177
Query: 142 --IINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNS 199
+++AELF LK+T+G SY +FML+KL+P GN+C++++GL+ D A+ IAKEVDVI+NS
Sbjct: 178 NEVLDAELFNSLKETHGASYMSFMLTKLIPVTGNICDSDIGLQADSAEEIAKEVDVIINS 237
Query: 200 AANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259
AANTTF+ERYD+A+DINTRGP LM FAK+C KLKLF+QVSTAYVNGQR+G++ME PF M
Sbjct: 238 AANTTFNERYDVALDINTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQRQGRIMEMPFSM 297
Query: 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALE-SKEFSTDGEVAQKMKGLGLE-------- 310
GD IA ENF+ +R+ LDV+ EMKLALE +++ + + + AQKMK LGLE
Sbjct: 298 GDCIATENFLEGNRK---ALDVDREMKLALEAARKGTQNQDEAQKMKDLGLERARSYGWQ 354
Query: 311 -----------------RGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQ 353
RGD+PVVIIRPSVIEST K+PF GWMEGNRMMDPI+L YGKGQ
Sbjct: 355 DTYVFTKAMGEMMINSTRGDVPVVIIRPSVIESTYKDPFPGWMEGNRMMDPIVLCYGKGQ 414
Query: 354 LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQ---KPDINVYQIASSVVNPLVFQDL 410
LTGFLVDP G+LDVVPADMVVNATLAAIA+HGM +P+INVYQIASS +NPLVF+DL
Sbjct: 415 LTGFLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEPEINVYQIASSAINPLVFEDL 474
Query: 411 ARLLHEHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTS-TANLNGKL 469
A LL+ HY +SPC+D+KG PI V MKLF+S++DFS HLWRDA +RSGL S ++++ K+
Sbjct: 475 AELLYNHYKSSPCMDSKGDPIMVRLMKLFNSVDDFSDHLWRDAQERSGLMSGMSSVDNKM 534
Query: 470 PQKLETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVGSID 529
QKL+ IC+KSVEQAKHLA IYEPYTFYGGRFDNSNT+RLMEKMSE+EKR+FGFDVGSI+
Sbjct: 535 MQKLKFICKKSVEQAKHLATIYEPYTFYGGRFDNSNTQRLMEKMSEDEKREFGFDVGSIN 594
Query: 530 WKEYITNVHIPGLRRHVMKGRG 551
W +YITNVHIPGLRRHV+KGR
Sbjct: 595 WTDYITNVHIPGLRRHVLKGRA 616
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229920|ref|NP_187805.1| fatty acyl-CoA reductase 2 [Arabidopsis thaliana] gi|21431786|sp|Q08891.2|FACR2_ARATH RecName: Full=Fatty acyl-CoA reductase 2; AltName: Full=Fatty acid reductase 2; AltName: Full=Male sterility protein 2 gi|12322016|gb|AAG51054.1|AC069473_16 male sterility protein 2 (MS2); 67648-65205 [Arabidopsis thaliana] gi|10998139|dbj|BAB03110.1| male sterility protein 2 [Arabidopsis thaliana] gi|167077486|gb|ABZ10952.1| fatty acyl CoA reductase [Arabidopsis thaliana] gi|332641611|gb|AEE75132.1| fatty acyl-CoA reductase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/559 (61%), Positives = 422/559 (75%), Gaps = 62/559 (11%)
Query: 50 VSSALKERSTV-------TDTAAGSLVLSPNGKGHAEIV--VQDLVPFGGQATSLVELQD 100
VSS LK+R V A +LVLSPNG G + V+ L+PF G S+V +++
Sbjct: 63 VSSLLKDRGQVLIREQSSPAMDAETLVLSPNGNGRTIEINGVKTLMPFSG--ASMVGMKE 120
Query: 101 GIGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIF------------------I 142
G+GI+ FL+ K F +TG+TGFLAKVLIEK+LR PDV KI+ +
Sbjct: 121 GLGIISFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERLKNEV 180
Query: 143 INAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAAN 202
++AELF LK+T+G SY +FML+KL+P GN+C++N+GL+ D A+ IAKEVDVI+NSAAN
Sbjct: 181 LDAELFNTLKETHGASYMSFMLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINSAAN 240
Query: 203 TTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262
TTF+ERYD+A+DINTRGP LM FAK+C KLKLF+QVSTAYVNGQR+G++MEKPF MGD
Sbjct: 241 TTFNERYDVALDINTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFSMGDC 300
Query: 263 IAKENFVSNSRRLIPTLDVENEMKLALE-SKEFSTDGEVAQKMKGLGLE----------- 310
IA ENF+ +R+ LDV+ EMKLALE +++ + + + AQKMK LGLE
Sbjct: 301 IATENFLEGNRK---ALDVDREMKLALEAARKGTQNQDEAQKMKDLGLERARSYGWQDTY 357
Query: 311 --------------RGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTG 356
RGD+PVVIIRPSVIEST K+PF GWMEGNRMMDPI+L YGKGQLTG
Sbjct: 358 VFTKAMGEMMINSTRGDVPVVIIRPSVIESTYKDPFPGWMEGNRMMDPIVLCYGKGQLTG 417
Query: 357 FLVDPNGILDVVPADMVVNATLAAIAQHGMIQ---KPDINVYQIASSVVNPLVFQDLARL 413
FLVDP G+LDVVPADMVVNATLAAIA+HGM +P+INVYQIASS +NPLVF+DLA L
Sbjct: 418 FLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEPEINVYQIASSAINPLVFEDLAEL 477
Query: 414 LHEHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTS-TANLNGKLPQK 472
L+ HY SPC+D+KG PI V MKLF+S++DFS HLWRDA +RSGL S ++++ K+ QK
Sbjct: 478 LYNHYKTSPCMDSKGDPIMVRLMKLFNSVDDFSDHLWRDAQERSGLMSGMSSVDSKMMQK 537
Query: 473 LETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKE 532
L+ IC+KSVEQAKHLA IYEPYTFYGGRFDNSNT+RLME MSE+EKR+FGFDVGSI+W +
Sbjct: 538 LKFICKKSVEQAKHLATIYEPYTFYGGRFDNSNTQRLMENMSEDEKREFGFDVGSINWTD 597
Query: 533 YITNVHIPGLRRHVMKGRG 551
YITNVHIPGLRRHV+KGR
Sbjct: 598 YITNVHIPGLRRHVLKGRA 616
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 554 | ||||||
| TAIR|locus:2088664 | 616 | MS2 "MALE STERILITY 2" [Arabid | 0.489 | 0.439 | 0.697 | 2.1e-180 | |
| TAIR|locus:2134278 | 493 | CER4 "ECERIFERUM 4" [Arabidops | 0.429 | 0.482 | 0.370 | 2.7e-78 | |
| TAIR|locus:2076023 | 496 | FAR5 "fatty acid reductase 5" | 0.427 | 0.477 | 0.369 | 3.4e-76 | |
| TAIR|locus:2076028 | 493 | FAR4 "fatty acid reductase 4" | 0.425 | 0.478 | 0.402 | 1.1e-72 | |
| TAIR|locus:2171107 | 491 | FAR1 "fatty acid reductase 1" | 0.427 | 0.482 | 0.396 | 4.2e-71 | |
| TAIR|locus:2076038 | 496 | FAR8 "fatty acid reductase 8" | 0.431 | 0.481 | 0.384 | 2.6e-67 | |
| TAIR|locus:2176407 | 409 | FAR7 "fatty acid reductase 7" | 0.400 | 0.542 | 0.359 | 3e-51 | |
| DICTYBASE|DDB_G0289081 | 1279 | DDB_G0289081 "phospholipid/gly | 0.779 | 0.337 | 0.267 | 1.2e-39 | |
| FB|FBgn0034145 | 625 | CG5065 [Drosophila melanogaste | 0.772 | 0.684 | 0.247 | 4.2e-38 | |
| UNIPROTKB|Q96K12 | 515 | FAR2 "Fatty acyl-CoA reductase | 0.770 | 0.829 | 0.274 | 1e-36 |
| TAIR|locus:2088664 MS2 "MALE STERILITY 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 2.1e-180, Sum P(3) = 2.1e-180
Identities = 196/281 (69%), Positives = 230/281 (81%)
Query: 280 DVENEMK-LALE-SKEFS-TDGEVAQKMKG---LGLERGDIPVVIIRPSVIESTCKEPFS 333
D +MK L LE ++ + D V K G + RGD+PVVIIRPSVIEST K+PF
Sbjct: 335 DEAQKMKDLGLERARSYGWQDTYVFTKAMGEMMINSTRGDVPVVIIRPSVIESTYKDPFP 394
Query: 334 GWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQ---KP 390
GWMEGNRMMDPI+L YGKGQLTGFLVDP G+LDVVPADMVVNATLAAIA+HGM +P
Sbjct: 395 GWMEGNRMMDPIVLCYGKGQLTGFLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEP 454
Query: 391 DINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHLW 450
+INVYQIASS +NPLVF+DLA LL+ HY SPC+D+KG PI V MKLF+S++DFS HLW
Sbjct: 455 EINVYQIASSAINPLVFEDLAELLYNHYKTSPCMDSKGDPIMVRLMKLFNSVDDFSDHLW 514
Query: 451 RDAIQRSGLTS-TANLNGKLPQKLETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERL 509
RDA +RSGL S ++++ K+ QKL+ IC+KSVEQAKHLA IYEPYTFYGGRFDNSNT+RL
Sbjct: 515 RDAQERSGLMSGMSSVDSKMMQKLKFICKKSVEQAKHLATIYEPYTFYGGRFDNSNTQRL 574
Query: 510 MEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGR 550
ME MSE+EKR+FGFDVGSI+W +YITNVHIPGLRRHV+KGR
Sbjct: 575 MENMSEDEKREFGFDVGSINWTDYITNVHIPGLRRHVLKGR 615
|
|
| TAIR|locus:2134278 CER4 "ECERIFERUM 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 2.7e-78, Sum P(3) = 2.7e-78
Identities = 90/243 (37%), Positives = 144/243 (59%)
Query: 307 LGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILD 366
+G +R ++ +V++RPS+I ST KEPF GW EG R +D + + YGKG+LT FL D + + D
Sbjct: 252 VGTKRENLSLVLLRPSIITSTFKEPFPGWTEGIRTIDSLAVGYGKGKLTCFLCDLDAVSD 311
Query: 367 VVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDT 426
V+PADMVVN+ L ++A Q+ +I +Y + SS+ NP+ L + ++S P +
Sbjct: 312 VMPADMVVNSILVSMAAQAGKQE-EI-IYHVGSSLRNPMKNSKFPELAYRYFSIKPWTNK 369
Query: 427 KGRPIRVPSMKLFSSMEDFSAHLW-RDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAK 485
+G+ ++V ++++ SSM F ++ R I GL + KL +K K +
Sbjct: 370 EGKVVKVGAIEILSSMRSFHRYMTIRYLIALKGLELVNIILCKLFEKEFQYFNKKINFIF 429
Query: 486 HLADIYEPYTFYGGRFDNSNTERLMEKMSEE--EKRKFGFDVGSIDWKEYITNVHIPGLR 543
L D+Y+PY F+ G FD+SNTE+L + +S+ E F FD +DW +Y N H+ GL
Sbjct: 430 RLVDLYQPYLFFYGIFDDSNTEKLRKMVSKTGVENEMFYFDPKVLDWDDYFLNTHVIGLL 489
Query: 544 RHV 546
++V
Sbjct: 490 KYV 492
|
|
| TAIR|locus:2076023 FAR5 "fatty acid reductase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 395 (144.1 bits), Expect = 3.4e-76, Sum P(3) = 3.4e-76
Identities = 93/252 (36%), Positives = 137/252 (54%)
Query: 307 LGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILD 366
LG + ++P+VIIRP++I ST EPF GW+EG R +D +I+ YGKG L FLVD N + D
Sbjct: 249 LGKHKENLPLVIIRPTMITSTLSEPFPGWIEGLRTVDSVIIAYGKGVLKCFLVDVNSVCD 308
Query: 367 VVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDT 426
++P DMV NA + A A+H + VY + SS NP+ F ++ + +++ +P
Sbjct: 309 MIPVDMVANAMITAAAKHAGGSGVHM-VYHVGSSHQNPVTFGEIHEIAVRYFTKNPLRSR 367
Query: 427 KGRPIRVPSMKLFSSMEDFSAHL---WRDAIQRSGLTSTAN--LNGKLPQKLETICRKSV 481
G I V ++ +M FS ++ ++ +Q L NG K RK +
Sbjct: 368 NGSLITVSKVRFIPTMALFSLYMTLRYKLPLQLLKLVDIIYPWRNG---DKYGDKNRK-I 423
Query: 482 EQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEE-----KRKFGFDVGSIDWKEYITN 536
E L ++YEPY + G FD+ NT+ L EEE K F FD I+W +Y+TN
Sbjct: 424 ELVMRLVELYEPYVLFKGIFDDRNTKSLCANQKEEEIKNTEKLMFDFDPKGINWGDYLTN 483
Query: 537 VHIPGLRRHVMK 548
+HI GL HV+K
Sbjct: 484 IHISGLVTHVLK 495
|
|
| TAIR|locus:2076028 FAR4 "fatty acid reductase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 101/251 (40%), Positives = 146/251 (58%)
Query: 307 LGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILD 366
LG R ++P+VIIRP++I ST EPF GW+EG R +D +I+ YGKG+L FL DPN +LD
Sbjct: 248 LGNYRENLPIVIIRPTMITSTFSEPFPGWIEGLRTIDSVIVAYGKGRLKCFLADPNSVLD 307
Query: 367 VVPADMVVNATLAAIAQH-GMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVD 425
++P DMV NA + A A H G + VY + SS NP+ F+ + L +++ +P V
Sbjct: 308 LIPVDMVANAMVTAAAIHAGKLGSQ--TVYHVGSSCKNPITFEQIHDLAASYFTKNPLVR 365
Query: 426 TKGRPIRVPSMKLFSSMEDFSAHL---WRDAIQRSGLTSTAN--LNGKLPQKLETICRKS 480
G I V + S+M FS ++ ++ +Q L NG K + I RK
Sbjct: 366 RDGSSILVSKGTILSTMAQFSFYMTLRYKLPLQMLRLIYVIYPWWNGN---KYKDIDRK- 421
Query: 481 VEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFG---FDVGSIDWKEYITNV 537
++ A L D+Y PY + G FD++NTE+L K E K +G FD SIDW++Y+T +
Sbjct: 422 IKLAMRLVDLYRPYVLFKGIFDDTNTEKLRLKRKEINKEMYGLFEFDPKSIDWEDYMTTI 481
Query: 538 HIPGLRRHVMK 548
HIPGL +V+K
Sbjct: 482 HIPGLITYVLK 492
|
|
| TAIR|locus:2171107 FAR1 "fatty acid reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 99/250 (39%), Positives = 136/250 (54%)
Query: 307 LGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILD 366
+G R ++P+VIIRP++I ST EPF GW+EG + +D +I+ YGKG+L FL D N + D
Sbjct: 246 MGKYRENLPLVIIRPTMITSTIAEPFPGWIEGLKTLDSVIVAYGKGRLKCFLADSNSVFD 305
Query: 367 VVPADMVVNATLAAIAQHGMIQKPDIN-VYQIASSVVNPLVFQDLARLLHEHYSASPCVD 425
++PADMVVNA +AA H I +Y + SS NP+ F L +++ P +
Sbjct: 306 LIPADMVVNAMVAAATAHS--GDTGIQAIYHVGSSCKNPVTFGQLHDFTARYFAKRPLIG 363
Query: 426 TKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTSTANLNGKLP----QKLETICRKSV 481
G PI V + S+M FS L+ + L +N P + RK +
Sbjct: 364 RNGSPIIVVKGTILSTMAQFS--LYMTLRYKLPLQILRLINIVYPWSHGDNYSDLSRK-I 420
Query: 482 EQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKR---KFGFDVGSIDWKEYITNVH 538
+ A L ++Y+PY + G FD+ NTERL K E K F FD SIDW YITN H
Sbjct: 421 KLAMRLVELYQPYLLFKGIFDDLNTERLRMKRKENIKELDGSFEFDPKSIDWDNYITNTH 480
Query: 539 IPGLRRHVMK 548
IPGL HV+K
Sbjct: 481 IPGLITHVLK 490
|
|
| TAIR|locus:2076038 FAR8 "fatty acid reductase 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 96/250 (38%), Positives = 142/250 (56%)
Query: 307 LGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILD 366
LG + ++P+VIIRP++I ST EPF GW+EG R +D +I+ YGKG L FLVD N + D
Sbjct: 249 LGNHKENLPLVIIRPTMITSTLFEPFPGWIEGLRTVDSVIIAYGKGVLKCFLVDVNSVCD 308
Query: 367 VVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDT 426
++PADMV NA +AA A H K + VYQ+ SS NP+++ ++ +L +++ +
Sbjct: 309 MIPADMVANAMIAAAATHAGGSKVHM-VYQVGSSHQNPIIYGEIREILFCYFTKNSLRSR 367
Query: 427 KGRPIRVPSMKLFSSMEDFSAHL---WRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQ 483
G I V MKL ++ FS ++ ++ +Q L + + + RK ++
Sbjct: 368 NGSMITVSKMKLIPTLALFSLYMTIRYKLPVQLLKLVDII-YPSREGDEYKNKNRK-IDM 425
Query: 484 AKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRK-----FGFDVGSIDWKEYITNVH 538
L +YEPY + G FD+ NT+ L K EE+ R F FD I WK+Y+ NVH
Sbjct: 426 VMRLVKLYEPYVLFKGIFDDRNTKNLCAKQKEEDNRNSENFMFDFDPKIIKWKDYLINVH 485
Query: 539 IPGLRRHVMK 548
IPGL HV+K
Sbjct: 486 IPGLITHVLK 495
|
|
| TAIR|locus:2176407 FAR7 "fatty acid reductase 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 3.0e-51, Sum P(2) = 3.0e-51
Identities = 83/231 (35%), Positives = 127/231 (54%)
Query: 307 LGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILD 366
LG R +P+VIIRP++I ST +PF GW+EG + +D +I++YGKG L FLVD + D
Sbjct: 175 LGHYRETMPIVIIRPTIITSTFSDPFPGWIEGLKTVDSVIIFYGKGILKCFLVDQKTVCD 234
Query: 367 VVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDT 426
++P DMVVNA +A A H VY + SS NP++++ + ++ ++ SP V
Sbjct: 235 IIPVDMVVNAMIAIAADH-CHDSGSHTVYHVGSSNQNPVIYKQIYEMMSRYFMKSPLVGR 293
Query: 427 KGRPIRVPSMKLFSSMEDFSAHL---WRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQ 483
G I VP + S++ F + ++ IQ GL S +L+ + K RK +
Sbjct: 294 NGMLI-VPKVTRISTLARFRVYTNLRYKLPIQILGLLSVISLSQR--DKFALHNRK-FKM 349
Query: 484 AKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRK-FGFDVGSIDWKEY 533
A L +Y+PY + G FD+ N E L K ++ K FG + IDW++Y
Sbjct: 350 AMRLVKLYKPYVLFKGIFDDKNMETLRIKNEAKDMEKLFGTNPKCIDWEDY 400
|
|
| DICTYBASE|DDB_G0289081 DDB_G0289081 "phospholipid/glycerol acyltransferase domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 1.2e-39, P = 1.2e-39
Identities = 127/474 (26%), Positives = 229/474 (48%)
Query: 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII---NAE-----------LFK 149
+ F K +TGATGF+ KVL+EK++R +PD+ KI+II NA+ ++
Sbjct: 4 LANFYAGKTVLITGATGFVGKVLLEKMVRDLPDIEKIYIIIRGNAKERFEEDILQSRIWD 63
Query: 150 CLKQTYGKS-YQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDER 208
K G++ + A + +K+V G++ + LGL + + +V+VI++ AA+ F ER
Sbjct: 64 TCKAKMGEAAFNAHIHNKVVAIGGDLSKEGLGLSSEDYQTVVDQVNVIIHCAASIDFRER 123
Query: 209 YDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEK-------PFCMGD 261
D AI N +++ +K+ + +V STAYVN R G + E+ P M D
Sbjct: 124 LDKAISSNLYASLNMLDLSKRLKNVVAYVHCSTAYVNSNREGWLDEELPVLDFNPEEMVD 183
Query: 262 SIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRP 321
I K++ + R+ P L L ++ + +++ L L+RGDIP+ +RP
Sbjct: 184 LIMKQD-IQTLERITPNL-------LGAYPNTYTFTKAITERI--LALKRGDIPMCFLRP 233
Query: 322 SVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAI 381
+++ + KEP GW++ + ++LY G G + D + D+VP D V NA +A+
Sbjct: 234 TIVGGSLKEPVPGWVDSVAAIGAVMLYCGVGLVQFMKGDGRMVADIVPVDHVANALIASA 293
Query: 382 AQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPSMKLFSS 441
G + + ++QI +S NP+ + ++ + E++ T + I SS
Sbjct: 294 VAIG--NQNVLKIHQIGTSHRNPVAWNRISHYVTEYWRNH----TPKKSIARSQFSFHSS 347
Query: 442 MEDFSAHLW-RDAIQRSGLTSTANLNGKLPQKLETI-CRKSVEQAKHLADIYEPYTFYGG 499
+ AH + R + + L + L G K + +K A+ + D ++ +T +
Sbjct: 348 TVMYEAHFFMRYGVPSALLQVLSTLTGSEDTKTKAEGFKKMTRAARLICDTFKHFTAHEW 407
Query: 500 RFDNSNTERLMEKMSEEEKR-KFGFDVGSIDWKEYITNVHIPGLRRHVMKGRGI 552
F + E++ + + + E R K+ D I+W+ Y GL ++VMK G+
Sbjct: 408 VFSVTALEKVYQDLLDGEDRVKYNCDAAEINWQSYFCYFCF-GLHKYVMKEEGV 460
|
|
| FB|FBgn0034145 CG5065 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 4.2e-38, P = 4.2e-38
Identities = 116/469 (24%), Positives = 216/469 (46%)
Query: 102 IGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-----------------N 144
+ I +F ++ F+TG TGF+ KVL+EK+LR+ P++ I+++ N
Sbjct: 117 VPIAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLTELLN 176
Query: 145 AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTT 204
A LF+ L+Q K LSK++P G++ LG+ E +++ + V V+ +SAA
Sbjct: 177 APLFESLRQEKPKE-----LSKVIPISGDITSEELGISEKDQNLLCRNVSVVFHSAATVK 231
Query: 205 FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGK---VMEKPFCMGD 261
FDE+ +++ IN G RL+E + L + VSTAY N R + P+ D
Sbjct: 232 FDEKLKLSVTINMLGTKRLVELCHRMLSLDALIHVSTAYCNCDRTDVSEVIYAPPYNPDD 291
Query: 262 SIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRP 321
I+ N++ LD + ++ +A+ M L E G++PV I+RP
Sbjct: 292 IISLINWLPED-----ILDQLTPRLIGKRPNTYTFTKALAEHM--LLKEAGNLPVAIVRP 344
Query: 322 SVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAI 381
S++ ++ EPF+GW++ ++ KG + + N + D+VP D+V+N +AA
Sbjct: 345 SIVTASLNEPFAGWVDNFNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDIVINLMIAAA 404
Query: 382 AQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPSMKLFSS 441
+ + ++ +Y + NP+++ + + P P +++
Sbjct: 405 WRTATRKSNNLLIYNCCTGQRNPIIWSEFVKHAMTSVRKHPLEGCLWYP--TGDLRMNRP 462
Query: 442 MEDFSAHLWRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAKHLADIYEPYTFYGGRF 501
M + + + + L A + GK P + + + +A + E + RF
Sbjct: 463 MNTLNC-IAKHFLPAYILDGVARIMGKKPFVVNV--QNKIAKA---VECLEYFATRQWRF 516
Query: 502 DNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGR 550
+ N L+ +S +++ F FDV I+W +Y+ ++ G R + K R
Sbjct: 517 KDDNVHALLHTLSPKDREIFVFDVRHINWDKYVER-YVLGFREFLFKQR 564
|
|
| UNIPROTKB|Q96K12 FAR2 "Fatty acyl-CoA reductase 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 127/462 (27%), Positives = 214/462 (46%)
Query: 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFI-INAELFKCLKQTYGKSYQAF 162
I F K+ +TGATGFL KVL+EK+ RT PD+ I+I + + + L+Q + +
Sbjct: 4 IAAFYGGKSILITGATGFLGKVLMEKLFRTSPDLKVIYILVRPKAGQTLQQRVFQILDSK 63
Query: 163 MLSKLVPAVGNVCENNLGLEEDLAD---VIAKE--------VDVIVNSAANTTFDERYDI 211
+ K+ NV E + DL I+KE ++I + AA FD+
Sbjct: 64 LFEKVKEVCPNVHEKIRAIYADLNQNDFAISKEDMQELLSCTNIIFHCAATVRFDDTLRH 123
Query: 212 AIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPF-CMGDSIAKENFVS 270
A+ +N +L+ A Q KL+ F+ +STAY N + + E + C + + +
Sbjct: 124 AVQLNVTATRQLLLMASQMPKLEAFIHISTAYSNCNLK-HIDEVIYPC---PVEPKKIID 179
Query: 271 NSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330
+ L + E KL + T + +M + E ++ + IIRPS++ +T +E
Sbjct: 180 SLEWLDDAIIDEITPKLIRDWPNIYTYTKALGEMV-VQQESRNLNIAIIRPSIVGATWQE 238
Query: 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKP 390
PF GW++ + II+ GKG L P + DV+P D VVN LA + + + +P
Sbjct: 239 PFPGWVDNINGPNGIIIATGKGFLRAIKATPMAVADVIPVDTVVNLMLA-VGWYTAVHRP 297
Query: 391 DIN-VYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHL 449
VY I S +NP + + + + P RP R P+ F+S F++
Sbjct: 298 KSTLVYHITSGNMNPCNWHKMGVQVLATFEKIPFE----RPFRRPNAN-FTS-NSFTSQY 351
Query: 450 WRDAIQRSGLT---STANLNGKLPQKLETICRKSVEQAKHLADIYEPYTFYGGRFDNSNT 506
W R+ L G+ P+ K + + + E + + NT
Sbjct: 352 WNAVSHRAPAIIYDCYLRLTGRKPRMT-----KLMNRLLRTVSMLEYFINRSWEWSTYNT 406
Query: 507 ERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMK 548
E LM ++S E++R F FDV ++W EYI N ++ G++++++K
Sbjct: 407 EMLMSELSPEDQRVFNFDVRQLNWLEYIEN-YVLGVKKYLLK 447
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q08891 | FACR2_ARATH | 1, ., 2, ., 1, ., n, 2 | 0.6153 | 0.8971 | 0.8068 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00160552 | fatty acyl-CoA reductase (alcohol-forming) (610 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 554 | |||
| PLN02503 | 605 | PLN02503, PLN02503, fatty acyl-CoA reductase 2 | 0.0 | |
| PLN02996 | 491 | PLN02996, PLN02996, fatty acyl-CoA reductase | 1e-135 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 1e-103 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 5e-58 | |
| cd09071 | 92 | cd09071, FAR_C, C-terminal domain of fatty acyl Co | 4e-25 | |
| pfam03015 | 94 | pfam03015, Sterile, Male sterility protein | 2e-18 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 5e-16 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 1e-15 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 4e-11 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 1e-09 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 2e-06 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 4e-05 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 1e-04 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 1e-04 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 1e-04 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 2e-04 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 2e-04 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 4e-04 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 5e-04 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 9e-04 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 0.002 |
| >gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Score = 940 bits (2430), Expect = 0.0
Identities = 412/608 (67%), Positives = 469/608 (77%), Gaps = 60/608 (9%)
Query: 1 MGALFLNSLSVAPNKFVKAFENNCDLCLLR--RKRSIMHCQ--GGGKTTRSSGVSSALKE 56
MG+LFL+S SVA NK ++ + CD LR ++ + CQ GGG RSSG+SS L E
Sbjct: 1 MGSLFLSSPSVASNKLIR-VSSKCDWSTLRLKKRVVPVFCQGGGGGDGIRSSGLSSVLAE 59
Query: 57 RSTV--------TDTAAGSLVLSPNGKGHAEIVVQDLVPFGGQATSLVELQDGIGIVKFL 108
RS V AGSLVLSPNGKG EI V+DLVP+G +S VE+ DGIGI +FL
Sbjct: 60 RSRVGSSQQHVAACRDAGSLVLSPNGKGQPEIAVKDLVPYGS--SSAVEMADGIGIAEFL 117
Query: 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIF------------------IINAELFKC 150
+ KNF +TGATGFLAKVLIEKILRT PDVGKI+ +I+AELFKC
Sbjct: 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKC 177
Query: 151 LKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYD 210
L++T+GKSYQ+FMLSKLVP VGNVCE+NLGLE DLAD IAKEVDVI+NSAANTTFDERYD
Sbjct: 178 LQETHGKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYD 237
Query: 211 IAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVS 270
+AIDINTRGPC LM FAK+C KLKLF+QVSTAYVNGQR+G++MEKPF MGD IA+E +S
Sbjct: 238 VAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFRMGDCIARELGIS 297
Query: 271 NS-RRLIPTLDVENEMKLALESKEFSTDG-EVAQKMKGLGLER----------------- 311
NS P LD+E E+KLAL+SK AQKMK LGLER
Sbjct: 298 NSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKAMG 357
Query: 312 --------GDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNG 363
GDIPVVIIRPSVIEST K+PF GWMEGNRMMDPI+LYYGKGQLTGFL DPNG
Sbjct: 358 EMVINSMRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNG 417
Query: 364 ILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPC 423
+LDVVPADMVVNATLAA+A+HG KP+INVYQIASSVVNPLVFQDLARLL+EHY +SP
Sbjct: 418 VLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSSPY 477
Query: 424 VDTKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQ 483
+D+KGRPI VP MKLFSSMEDFS+HLWRDA+ RSGL ++ + KL QKLE IC KSVEQ
Sbjct: 478 MDSKGRPIHVPPMKLFSSMEDFSSHLWRDALLRSGLAGMSSSDRKLSQKLENICAKSVEQ 537
Query: 484 AKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLR 543
AK+LA IYEPYTFYGGRFDNSNT+RLME+MSEEEK +FGFDVGSIDW++YITNVHIPGLR
Sbjct: 538 AKYLASIYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDVGSIDWRDYITNVHIPGLR 597
Query: 544 RHVMKGRG 551
RHVMKGRG
Sbjct: 598 RHVMKGRG 605
|
Length = 605 |
| >gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Score = 400 bits (1030), Expect = e-135
Identities = 191/501 (38%), Positives = 294/501 (58%), Gaps = 70/501 (13%)
Query: 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIF------------------IINA 145
V+FL+ K VTGATGFLAK+ +EKILR P+V K++ +I
Sbjct: 5 CVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGK 64
Query: 146 ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE-DLADVIAKEVDVIVNSAANTT 204
+LFK L++ G++ + + K+ P G++ ++LG+++ +L + + KE+D++VN AA T
Sbjct: 65 DLFKVLREKLGENLNSLISEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN 124
Query: 205 FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264
FDERYD+A+ INT G ++ FAK+C K+K+ + VSTAYV G++ G ++EKPF MG+
Sbjct: 125 FDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGEKSGLILEKPFHMGE-TL 183
Query: 265 KENFVSNSRRLIPTLDVENEMKLALE-----SKEFSTDGEVAQKMKGLGLERG------- 312
N LD+ E KL E +++ +++ E+ Q MK LG+ER
Sbjct: 184 NGNR---------KLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPN 234
Query: 313 ------------------DIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQL 354
++P+VIIRP++I ST KEPF GW+EG R +D +I+ YGKG+L
Sbjct: 235 TYVFTKAMGEMLLGNFKENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKL 294
Query: 355 TGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLL 414
T FL DPN +LDV+PADMVVNA + A+A H Q +I +Y + SS+ NP+ F +L
Sbjct: 295 TCFLADPNSVLDVIPADMVVNAMIVAMAAHAGGQGSEI-IYHVGSSLKNPVKFSNLHDFA 353
Query: 415 HEHYSASPCVDTKGRPIRVPSMKLFSSMEDFSAHL-WRDAIQRSGLTSTANLNGKLPQKL 473
+ ++S +P ++ +G P++V + S+M FS ++ R + L +N LP++
Sbjct: 354 YRYFSKNPWINKEGSPVKVGKGTILSTMASFSLYMTIRYLLPLKALQL---VNIILPKRY 410
Query: 474 ETICR---KSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSE---EEKRKFGFDVGS 527
+ ++ L D+Y+PY F+ G FD++NTE+L K E EE F FD S
Sbjct: 411 GDKYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDFDPKS 470
Query: 528 IDWKEYITNVHIPGLRRHVMK 548
IDW++Y+TNVHIPGL ++V+K
Sbjct: 471 IDWEDYMTNVHIPGLVKYVLK 491
|
Length = 491 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 314 bits (807), Expect = e-103
Identities = 121/340 (35%), Positives = 179/340 (52%), Gaps = 48/340 (14%)
Query: 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFII------------NAELFKCLKQTYGKS 158
K+ +TGATGFL KVL+EK+LR+ PD+GKI+++ EL K G++
Sbjct: 1 KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRN 60
Query: 159 YQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTR 218
SK+VP G++ E NLGL ++ + +EV++I++ AA TFDER D A+ IN
Sbjct: 61 LNPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCAATVTFDERLDEALSINVL 120
Query: 219 GPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPT 278
G RL+E AK+C KLK FV VSTAYVNG R+ + EK +
Sbjct: 121 GTLRLLELAKRCKKLKAFVHVSTAYVNGDRQ-LIEEKVYPPPADP--------------- 164
Query: 279 LDVENEMKLALESKEFSTDGEVAQKMKG----------------LGLERGDIPVVIIRPS 322
++ LE + K+ G + ERG++P+VI+RPS
Sbjct: 165 ----EKLIDILELMDDLELERATPKLLGGHPNTYTFTKALAERLVLKERGNLPLVIVRPS 220
Query: 323 VIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIA 382
++ +T KEPF GW++ D + L YGKG L DPN + D++P D+V NA LAA A
Sbjct: 221 IVGATLKEPFPGWIDNFNGPDGLFLAYGKGILRTMNADPNAVADIIPVDVVANALLAAAA 280
Query: 383 QHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422
G+ + ++ VY SS VNP + + L++++ +P
Sbjct: 281 YSGVRKPRELEVYHCGSSDVNPFTWGEAEELINQYLKKNP 320
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 5e-58
Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 52/280 (18%)
Query: 115 VTGATGFLAKVLIEKILRTVPDVGKIFI-------------INAELFKCLKQTYGKSYQA 161
+TGATGFL KVL+EK+LR+ P+V KI+ + EL K YG +
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEV-KIYCLVRAKDGESALERLRQELLK-----YGLFDRL 54
Query: 162 FMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPC 221
L +++P G++ E NLGL ++ +A+EVDVI+++AA F E Y N G
Sbjct: 55 KALERIIPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPYSDLRATNVLGTR 114
Query: 222 RLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDV 281
++ AKQ K F VSTAYVNG+R G + EKP
Sbjct: 115 EVLRLAKQM-KKLPFHHVSTAYVNGERGGLLEEKP-----------------------YK 150
Query: 282 ENEMKLALESKEFSTDGE---VAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG 338
+E + AL + + +A+++ + G +PVVI RPS+I E +GW+ G
Sbjct: 151 LDEDEPALLGGLPNGYTQSKWLAEQL--VREAAGGLPVVIYRPSIITG---ESRTGWING 205
Query: 339 NRMM-DPIILYYGKGQLTGFLVDPNGILDVVPADMVVNAT 377
+ ++ G G L L DP+ LD+VP D V NA
Sbjct: 206 DDFGPRGLLGGAGLGVLPDILGDPDARLDLVPVDYVANAI 245
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|176924 cd09071, FAR_C, C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 4e-25
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 463 ANLNGKLPQKLETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFG 522
L G+ P+ L+ + RK L D+ E +T RFDN NT L E++SEE++ F
Sbjct: 14 LRLLGRKPRLLK-LYRK----IHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFN 68
Query: 523 FDVGSIDWKEYITNVHIPGLRRHVM 547
FD+ SIDW +Y N IPGLR++++
Sbjct: 69 FDIRSIDWDDYFENY-IPGLRKYLL 92
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. Length = 92 |
| >gnl|CDD|111859 pfam03015, Sterile, Male sterility protein | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-18
Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 489 DIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMK 548
++ +P++ FDN NT L EKMSEE+K+ F FD+ S+DW EY N I G+R++++K
Sbjct: 35 EVLQPFSLNEWIFDNKNTRELREKMSEEDKKLFNFDMESLDWDEYFRN-AIRGIRKYLLK 93
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 94 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIF-IINAE--------LFKCLKQTYGKSYQAF 162
+TGATGFL L+ ++L+ +V KI+ ++ A+ L LK+ +
Sbjct: 1 TVLLTGATGFLGAYLLRELLKR-KNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDEL 59
Query: 163 MLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCR 222
LS++ VG++ + NLGL +D +A+EVDVI+++ AN + Y+ N G
Sbjct: 60 ELSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVYPYEELKPANVLGTKE 119
Query: 223 LMEFAKQCNKLKLFVQVSTAYV 244
L++ A KLK VST V
Sbjct: 120 LLKLAAT-GKLKPLHFVSTLSV 140
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 57/284 (20%), Positives = 105/284 (36%), Gaps = 50/284 (17%)
Query: 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFII---NAELFKCLKQTYGKSYQAFMLSKLVP 169
FVTG TGFL + L++++L K+ ++ + + +
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENG---FKVLVLVRSESLGEAHERIEEAGLEADRV----RV 53
Query: 170 AVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQ 229
G++ + NLGL + +A +VD +++ AA+ F + A N G ++E A +
Sbjct: 54 LEGDLTQPNLGLSAAASRELAGKVDHVIHCAASYDFQAPNEDAWRTNIDGTEHVLELAAR 113
Query: 230 CNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLAL 289
+ + F VSTAYV G R G + E L+ K
Sbjct: 114 LDI-QRFHYVSTAYVAGNREGNIRETE----------------------LNPGQNFKNPY 150
Query: 290 ESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYY 349
E + + V IP+ + RPS++ + +G +E +D +
Sbjct: 151 EQSKAEAEQLVRAAAT-------QIPLTVYRPSIV---VGDSKTGRIEK---IDGLYELL 197
Query: 350 GK----GQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQK 389
G+ + L++VP D V +A + + +
Sbjct: 198 NLLAKLGRWLPMPGNKGARLNLVPVDYVADAIVYLSKKPEANGQ 241
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 65/281 (23%), Positives = 107/281 (38%), Gaps = 39/281 (13%)
Query: 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-----NAELFKCLKQTYGKS--YQAFM 163
+N +TGATGFL L+ ++L K+ + + L++T+ +
Sbjct: 1 RNVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQSDEAALARLEKTFDLYRHWDELS 58
Query: 164 LSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRL 223
++ G++ E +LGL E +A+ VD+I+++AA Y N G +
Sbjct: 59 ADRVEVVAGDLAEPDLGLSERTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEV 118
Query: 224 MEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVEN 283
+ A K K VS+ V G++ NF + + PT +V
Sbjct: 119 LRLAAT-GKPKPLHYVSSISV---------------GETEYYSNFTVDFDEISPTRNVGQ 162
Query: 284 EMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343
+ ++ VA+K+ +RG +PV I RP I S N
Sbjct: 163 GLAGGYGRSKW-----VAEKLVREAGDRG-LPVTIFRPGYITGD-----SRTGALN--TR 209
Query: 344 PIILYYGKGQL-TGFLVDPNGILDVVPADMVVNATLAAIAQ 383
+ G L G D LD++P D V A +A Q
Sbjct: 210 DFLTRLVLGLLQLGIAPDSEYSLDMLPVDHVARAVVAPSVQ 250
|
Length = 382 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 10/149 (6%)
Query: 114 FVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--------LFKCLKQTYGKSYQAFMLS 165
+TGATGFL L+E++LR I ++ A L + L+ Y ++
Sbjct: 3 LLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRS-YRLWHEDLARE 61
Query: 166 KLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLME 225
++ G++ E LGL + + +A+ VD IV++ A + Y N G ++
Sbjct: 62 RIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVNWVYPYSELRGANVLGTREVLR 121
Query: 226 FAKQCNKLKLFVQVSTAYVNGQRRGKVME 254
A + K VST V +
Sbjct: 122 LAAS-GRAKPLHYVSTISVGAAIDLSTVT 149
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 23/133 (17%)
Query: 114 FVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGN 173
VTG TGF+ L+ ++L+ +V + + ++ ++ G+
Sbjct: 2 LVTGGTGFIGSHLVRRLLQEGYEVIVL-------------GRRRRSESLNTGRIRFHEGD 48
Query: 174 VCENNLGLEEDLADVIAKE-VDVIVNSAANTTFDERYDIA---IDINTRGPCRLMEFAKQ 229
+ + + L ++A+ D +++ AA + ++ I N G RL+E A++
Sbjct: 49 LTDP-----DALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARR 103
Query: 230 CNKLKLFVQVSTA 242
+K FV S++
Sbjct: 104 AG-VKRFVFASSS 115
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 57/312 (18%), Positives = 108/312 (34%), Gaps = 68/312 (21%)
Query: 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPA 170
VTG GF+ L+E++L DV + + +LS +
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDV--RGLDR-----------LRDGLDPLLSGVEFV 47
Query: 171 VGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTF----DERYDIAIDINTRGPCRLMEF 226
V ++ + + + ++ D +++ AA ++ +D+N G L+E
Sbjct: 48 VLDLTD-----RDLVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEA 102
Query: 227 AKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMK 286
A+ K FV S+ V G P + + ++ K
Sbjct: 103 ARAAGV-KRFVFASSVSVVY---GDPPPLPI--DEDLGPPRPLNPYGVS----------K 146
Query: 287 LALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGN---RMMD 343
LA E ++ + +PVVI+RP + + + + ++
Sbjct: 147 LAAE--------QLLRAYA----RLYGLPVVILRPFNV-------YGPGDKPDLSSGVVS 187
Query: 344 PIILYYGKGQ-LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVV 402
I KG+ + D + D V D V +A L A ++ PD V+ I S
Sbjct: 188 AFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLA------LENPDGGVFNI-GSGT 240
Query: 403 NPLVFQDLARLL 414
+ ++LA +
Sbjct: 241 AEITVRELAEAV 252
|
Length = 314 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 185 LADVIAKEV-DVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLK-LFVQV 239
+ +VI + DV++N+AA T D ++A +N G L A+ ++ V +
Sbjct: 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENL---ARAAAEVGARLVHI 98
Query: 240 STAYV-NGQRRG 250
ST YV +G++ G
Sbjct: 99 STDYVFDGEKGG 110
|
Length = 281 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 13/139 (9%)
Query: 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAV 171
VTG GF+ + IL PD +I + K TY + + + P
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAE---VIVLD-----KLTYAGNLENLADLEDNPRY 52
Query: 172 GNVCENNLGLEEDLADVIAK-EVDVIVNSAANTTFDERYD---IAIDINTRGPCRLMEFA 227
V + ++G E ++ + + + D +V+ AA + D I+ N G L+E
Sbjct: 53 RFV-KGDIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAV 111
Query: 228 KQCNKLKLFVQVSTAYVNG 246
++ F +ST V G
Sbjct: 112 RKYWHEFRFHHISTDEVYG 130
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 109 KAKNFFVTGATGFLAKVLIEKIL-RTVPDVGKIFII----NAEL-FKCLKQ---TYGKSY 159
F+TGATGFL ++ +L R K+F + E + L++ TYG +
Sbjct: 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYG-IW 1028
Query: 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAA 201
S++ +G++ + GL ++ + EVDVI+++ A
Sbjct: 1029 DEEWASRIEVVLGDLSKEKFGLSDEKWSDLTNEVDVIIHNGA 1070
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 56/276 (20%), Positives = 88/276 (31%), Gaps = 64/276 (23%)
Query: 114 FVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVP---A 170
VTGATGFL L+ +L V + + +S +L +P
Sbjct: 2 LVTGATGFLGSNLVRALLAQGYRV-RALV--------------RSGSDAVLLDGLPVEVV 46
Query: 171 VGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQ 229
G++ + LA K D + + AA T+ + N G +++ A +
Sbjct: 47 EGDLTD-----AASLAAA-MKGCDRVFHLAAFTSLWAKDRKELYRTNVEGTRNVLDAALE 100
Query: 230 CNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLAL 289
++ V S+ G D E N R P + KL
Sbjct: 101 A-GVRRVVHTSSIAALGGPP-----------DGRIDETTPWNER---PFPNDYYRSKL-- 143
Query: 290 ESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYY 349
+A+ G + VVI+ PS + F EG +L Y
Sbjct: 144 ----------LAELEVLEAAAEG-LDVVIVNPSAV-------FGPGDEGPTSTGLDVLDY 185
Query: 350 GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHG 385
G+L + P G V V +AA + G
Sbjct: 186 LNGKLPAY---PPGGTSFVDVRDVAEGHIAA-MEKG 217
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII---NAELFKCLKQTYGKSYQAFMLS 165
K K VTG G + L+ +IL+ P K+ + +L + L + F
Sbjct: 1 KGKTILVTGGAGSIGSELVRQILKFGP--KKLIVFDRDENKLHE-LVRELRSR---FPHD 54
Query: 166 KLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAAN---TTFDERYDIAIDINTRGPCR 222
KL +G+V + E + D++ ++AA + ++ + AI N G
Sbjct: 55 KLRFIIGDVRD----KERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKN 110
Query: 223 LMEFAKQCNKLKLFVQVST 241
+++ A + ++ FV +ST
Sbjct: 111 VIDAAIENG-VEKFVCIST 128
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 28/157 (17%)
Query: 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFII----NAELFKCLKQTYGKSYQAFMLSKL 167
+FVTG TGF+ + L+ ++L + + ++ + + L +G ++
Sbjct: 2 RYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVRRQSLSRLEALAAYWG-------ADRV 53
Query: 168 VPAVGNVCENNLGL-EEDLADVIAKEVDVIVNSAANTTFDERYDIAID------INTRGP 220
VP VG++ E LGL E D+A++ ++D +V+ AA YD+ D N G
Sbjct: 54 VPLVGDLTEPGLGLSEADIAEL--GDIDHVVHLAA------IYDLTADEEAQRAANVDGT 105
Query: 221 CRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPF 257
++E A++ F VS+ V G G E F
Sbjct: 106 RNVVELAERLQA-ATFHHVSSIAVAGDYEGVFREDDF 141
|
Length = 657 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 194 DVIVNSAANTTFD--ERY-DIAIDINTRGPCRLMEFAKQCNKLK-LFVQVSTAYV-NGQR 248
DV+VN+AA T D E ++A +N GP L A+ C + +ST YV +G +
Sbjct: 51 DVVVNAAAYTAVDKAESEPELAYAVNALGPGNL---AEACAARGAPLIHISTDYVFDGAK 107
Query: 249 RGKVMEK 255
G E
Sbjct: 108 GGPYRED 114
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 9e-04
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 17/142 (11%)
Query: 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLV-- 168
VTG GF+ + IL PD ++N + K TY + + L+ +
Sbjct: 1 MKILVTGGAGFIGSNFVRYILNKHPDDH---VVNLD-----KLTYAGNLEN--LADVEDS 50
Query: 169 PAVGNVCENNLGLEEDLADVIAK-EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLM 224
P V + ++ E + + + + D +V+ AA + D + I N G L+
Sbjct: 51 PRYRFV-QGDICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLL 109
Query: 225 EFAKQCNKLKLFVQVSTAYVNG 246
E A++ F +ST V G
Sbjct: 110 EAARKYWGKFRFHHISTDEVYG 131
|
Length = 340 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 28/149 (18%), Positives = 46/149 (30%), Gaps = 54/149 (36%)
Query: 114 FVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGN 173
VTG GF+ L+ ++ L++ + V +
Sbjct: 2 LVTGGAGFIGSHLVRRL--------------------LERGH-----------EVVVIDR 30
Query: 174 VCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYD---IAIDINTRGPCRLMEFAKQC 230
+ DV+V+ AA +D + N G L+E A++
Sbjct: 31 L-------------------DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKA 71
Query: 231 NKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259
K FV S+A V G G E+
Sbjct: 72 GV-KRFVYASSASVYGSPEGLPEEEETPP 99
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 554 | |||
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 100.0 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 100.0 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.97 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.97 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.97 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.97 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.96 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.96 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.95 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.95 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.95 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.95 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.95 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.95 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.94 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.94 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.94 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.94 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.94 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.94 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.94 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.94 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.93 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.93 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.93 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.93 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.93 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.93 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.93 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.93 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.92 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.92 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.92 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 99.92 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.92 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.91 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.91 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.91 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.91 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.91 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.91 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.91 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.9 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.9 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.9 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.9 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.9 | |
| PF03015 | 94 | Sterile: Male sterility protein; InterPro: IPR0042 | 99.9 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.89 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.89 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 99.89 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.89 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.88 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.88 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.87 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.87 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.86 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.86 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.85 | |
| cd09071 | 92 | FAR_C C-terminal domain of fatty acyl CoA reductas | 99.83 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.82 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.79 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.77 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.75 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.73 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.73 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.72 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.72 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.66 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.66 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.64 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.63 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.62 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.6 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.59 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.59 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.57 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.55 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.55 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.54 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.54 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.53 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.53 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.53 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.52 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.52 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.51 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 99.51 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.5 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.5 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.49 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.48 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.48 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.47 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.47 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.46 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.46 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.45 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.45 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.44 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.43 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.42 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.41 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.41 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.41 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.41 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.41 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.4 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.39 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.39 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.39 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.39 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.39 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.38 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.38 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.37 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.37 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.36 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.36 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.35 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.35 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.35 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.35 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.35 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.34 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.34 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.34 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.34 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.33 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.33 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.33 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.32 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.32 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.32 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.31 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.31 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.31 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.3 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.3 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.3 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.3 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.29 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.29 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.29 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.29 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.29 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.28 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.28 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.28 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.27 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.27 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.27 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.27 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.26 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.26 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.26 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.26 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.26 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.26 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.26 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.25 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.25 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.25 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.25 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.25 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.25 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.25 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.24 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.24 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.24 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.24 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.23 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.23 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.23 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.22 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.22 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.22 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.22 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.22 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.22 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.22 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.22 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.21 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.21 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.21 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.21 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.2 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.2 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.2 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.18 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.18 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.18 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.17 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.16 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.16 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.16 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.16 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.16 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.15 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.14 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.14 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.14 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.14 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.14 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.13 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.13 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.13 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.13 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.12 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.12 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.12 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.12 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.11 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.1 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.1 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.09 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.07 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.06 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.06 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.05 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.03 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.03 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.03 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.02 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 98.99 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 98.99 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 98.99 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 98.98 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 98.98 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 98.98 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 98.97 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.95 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.94 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 98.94 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 98.94 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 98.93 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.92 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 98.91 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.91 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.87 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 98.87 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.87 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.87 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 98.86 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 98.86 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.83 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.81 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.8 | |
| PLN00015 | 308 | protochlorophyllide reductase | 98.78 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 98.78 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.77 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.76 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 98.76 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 98.71 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 98.63 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 98.62 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 98.59 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 98.53 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 98.44 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 98.42 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 98.4 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 98.39 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 98.38 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 98.36 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 98.3 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 98.28 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.25 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.24 | |
| PLN00106 | 323 | malate dehydrogenase | 98.19 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 98.18 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.13 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.13 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.11 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 98.06 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 97.99 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 97.97 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 97.96 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 97.96 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.95 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 97.94 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 97.93 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.49 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 97.44 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.38 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 97.38 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 97.31 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 97.29 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 97.23 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.17 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.16 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.16 | |
| PF00550 | 67 | PP-binding: Phosphopantetheine attachment site; In | 97.09 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.05 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.02 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.0 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 96.77 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.69 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 96.57 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 96.52 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.43 | |
| PRK05691 | 4334 | peptide synthase; Validated | 96.2 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 95.94 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.93 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 95.89 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 95.88 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 95.79 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 95.77 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.73 | |
| PRK05691 | 4334 | peptide synthase; Validated | 95.67 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.64 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.62 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 95.49 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 95.45 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 95.38 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.32 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.31 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 95.24 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 95.14 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 95.08 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.03 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.01 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.96 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.95 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 94.95 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.94 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 94.85 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 94.8 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 94.76 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 94.76 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.64 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 94.59 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.58 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.55 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 94.51 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 94.47 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.37 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.25 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 94.21 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.21 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.16 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 93.93 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 93.9 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 93.85 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 93.75 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.7 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 93.59 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.47 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 93.4 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 93.32 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 93.06 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 92.71 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 92.62 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 92.37 | |
| PRK07081 | 83 | acyl carrier protein; Provisional | 92.17 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 92.14 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 92.07 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 92.06 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 91.99 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 91.95 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 91.83 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 91.8 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 91.73 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 91.72 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 91.44 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 91.35 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 91.33 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 91.3 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 91.09 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 90.67 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 90.53 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 90.51 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 90.49 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 90.46 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 90.29 | |
| smart00823 | 86 | PKS_PP Phosphopantetheine attachment site. Phospho | 90.17 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 90.14 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 90.08 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 89.89 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 89.74 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 89.51 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 89.32 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 89.21 | |
| PRK05087 | 78 | D-alanine--poly(phosphoribitol) ligase subunit 2; | 89.13 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 88.74 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 88.67 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 88.64 | |
| PRK05828 | 84 | acyl carrier protein; Validated | 88.64 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 88.39 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 88.2 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 88.01 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 88.0 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 87.78 | |
| PF12683 | 275 | DUF3798: Protein of unknown function (DUF3798); In | 87.76 | |
| PLN02602 | 350 | lactate dehydrogenase | 87.67 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 87.33 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 86.93 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 86.75 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 86.6 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 86.51 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 86.48 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.22 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 86.06 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 86.02 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 85.58 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 85.54 | |
| CHL00124 | 82 | acpP acyl carrier protein; Validated | 85.24 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 85.2 | |
| PRK09184 | 89 | acyl carrier protein; Provisional | 85.2 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 84.6 | |
| TIGR01688 | 73 | dltC D-alanine--poly(phosphoribitol) ligase, subun | 84.38 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 84.38 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 84.23 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 84.08 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 83.84 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 83.7 | |
| PRK00982 | 78 | acpP acyl carrier protein; Provisional | 83.42 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 83.32 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 83.12 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.99 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 82.97 | |
| PRK07117 | 79 | acyl carrier protein; Validated | 82.97 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 82.49 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.4 | |
| PRK07639 | 86 | acyl carrier protein; Provisional | 82.09 | |
| COG0236 | 80 | AcpP Acyl carrier protein [Lipid metabolism / Seco | 81.53 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 81.36 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 81.29 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 81.27 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 80.85 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 80.6 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 80.5 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 80.29 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 80.17 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 80.02 |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-85 Score=696.44 Aligned_cols=547 Identities=72% Similarity=1.119 Sum_probs=440.5
Q ss_pred CCcccccccCCcchhHHHHhhcccceeeeec--cccccccccCC--chhHHHHHHHHHhhhhcee--------eccccce
Q 042694 1 MGALFLNSLSVAPNKFVKAFENNCDLCLLRR--KRSIMHCQGGG--KTTRSSGVSSALKERSTVT--------DTAAGSL 68 (554)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Ff~~GG--~Sl~a~~l~~~l~~~~~v~--------~~~~~~~ 68 (554)
||+||+.+=|.|.+|..+ +-++|.||.|.. +..+-|.+.|| +.+....+.+.+.++-.+. +.++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (605)
T PLN02503 1 MGSLFLSSPSVASNKLIR-VSSKCDWSTLRLKKRVVPVFCQGGGGGDGIRSSGLSSVLAERSRVGSSQQHVAACRDAGSL 79 (605)
T ss_pred CCcccccCcchhhhhhhh-cccccchHHHHhhccccceEeccCCCCCCccccCcchhhhhhhhhccccCccceeecccce
Confidence 999999999999999999 999999997753 34558888855 4555444555555543222 1356678
Q ss_pred eeCCCCCCCcccccccccccCCCCchhHhhhcccchhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---
Q 042694 69 VLSPNGKGHAEIVVQDLVPFGGQATSLVELQDGIGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--- 145 (554)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--- 145 (554)
..+.++++++++...+..+.... +..+..++..+.+||++++|||||||||||++|+++||+++++|++||++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~ 157 (605)
T PLN02503 80 VLSPNGKGQPEIAVKDLVPYGSS--SAVEMADGIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKD 157 (605)
T ss_pred eecCCCCCCCCcccCCCCCCCCC--chhhccCCcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 88888889988888777655542 3444567788999999999999999999999999999999999999998843
Q ss_pred --hhHHHH-------------HHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHH
Q 042694 146 --ELFKCL-------------KQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYD 210 (554)
Q Consensus 146 --~~~~~l-------------~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~ 210 (554)
.+.+|+ ++..+..+.+...+|++++.||+++++|||++++++.+.+++|+|||+||.++++++++
T Consensus 158 ~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~ 237 (605)
T PLN02503 158 KEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYD 237 (605)
T ss_pred chhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHH
Confidence 123333 33333323333468999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccccccccc-CCCCCCChHHHHHHh-
Q 042694 211 IAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSR-RLIPTLDVENEMKLA- 288 (554)
Q Consensus 211 ~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~- 288 (554)
.+.++|+.||.+++++|++++++++|||+||++|||...+.+.|++|+.++.+..+...+..+ ...+..|...++...
T Consensus 238 ~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~ 317 (605)
T PLN02503 238 VAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLAL 317 (605)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHH
Confidence 999999999999999999887889999999999999987799999998554321111000000 001223333222211
Q ss_pred --------------------hh---ccCCCCchHHHHHHHhhhhh--cCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 289 --------------------LE---SKEFSTDGEVAQKMKGLGLE--RGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 289 --------------------~~---~k~~~~~k~~ae~l~e~~~~--~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
++ ..+++++|+++|.++|..+. +.++|++|+||++|.+++++|+|||+++...++
T Consensus 318 d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~TK~lAE~lV~~~~~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~ 397 (605)
T PLN02503 318 DSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKAMGEMVINSMRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMD 397 (605)
T ss_pred HhhhcccchHHHHHHhhhcccchhhhCCCCChHHHHHHHHHHHHHHhcCCCCEEEEcCCEecccccCCccccccCccccc
Confidence 00 12456789999999998873 458999999999999999999999999988888
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCCC
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPC 423 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p~ 423 (554)
+++..+++|.++.++++++...|+||||+|+|++++++++........+++||++++..||++|+++.+.+.+++.++|+
T Consensus 398 p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~P~ 477 (605)
T PLN02503 398 PIVLYYGKGQLTGFLADPNGVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSSPY 477 (605)
T ss_pred hhhhheeccceeEEEeCCCeeEeEEeecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhCCc
Confidence 88888899999999999999999999999999999996654332223578999999988999999999999999999999
Q ss_pred CCCCCCeEEeCCcchHHHHHHHHHHHHHHHHHHhcccccccccCcchHHHHH-HHHHHHHHHHHHHHhccccccceEEEe
Q 042694 424 VDTKGRPIRVPSMKLFSSMEDFSAHLWRDAIQRSGLTSTANLNGKLPQKLET-ICRKSVEQAKHLADIYEPYTFYGGRFD 502 (554)
Q Consensus 424 ~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ft~~~w~F~ 502 (554)
.+..|+++++|..++++.+..|+.|++.|.+++..+.+..+.++++ .+.++ ..+|.++++++++++++|||+++|.|+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~~~~~~~~~~~ft~~~w~F~ 556 (605)
T PLN02503 478 MDSKGRPIHVPPMKLFSSMEDFSSHLWRDALLRSGLAGMSSSDRKL-SQKLENICAKSVEQAKYLASIYEPYTFYGGRFD 556 (605)
T ss_pred ccccCcceeccCceehhhHHHHHHHHHHHHHHHHhhhcccccChHH-HHHHHHHHHHHHHHHHHHHHHHhhheeCeEEEe
Confidence 9999999999999999999999999988888775433322234444 34443 345677888999999999999999999
Q ss_pred chhHHHHHHhcChhhccccccCCCCCCHHHHHHhhchhHHHHHhhcCCC
Q 042694 503 NSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGRG 551 (554)
Q Consensus 503 ~~n~~~L~~~l~~~D~~~F~~d~~~idW~~Y~~~~~~~G~r~y~lke~~ 551 (554)
|+|+++|++.|+++||++|+||++.|||++||+++|++|+|||++|+|+
T Consensus 557 ~~n~~~L~~~ms~~Dr~~F~~D~~~idW~~Y~~~~~i~G~rky~lk~~~ 605 (605)
T PLN02503 557 NSNTQRLMERMSEEEKAEFGFDVGSIDWRDYITNVHIPGLRRHVMKGRG 605 (605)
T ss_pred chHHHHHHHhCCHHHhhccCCCcCCCCHHHHHHHhhhhHHHHHHhccCC
Confidence 9999999999999999999999999999999996689999999999985
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-83 Score=651.54 Aligned_cols=428 Identities=39% Similarity=0.603 Sum_probs=370.8
Q ss_pred cchhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc-----------------chhHHHHHHHcCCchhhhcc
Q 042694 102 IGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN-----------------AELFKCLKQTYGKSYQAFML 164 (554)
Q Consensus 102 ~~i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~-----------------~~~~~~l~~~~~~~~~~~~~ 164 (554)
+++.+||++|+|||||||||+|++|+|+||+.+|+|++||++- .++|+++++..++ ..
T Consensus 4 ~~i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~-----~l 78 (467)
T KOG1221|consen 4 SDIVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPE-----AL 78 (467)
T ss_pred ccHHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCcc-----ce
Confidence 4588999999999999999999999999999999999999762 2456666666554 67
Q ss_pred CcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 165 SKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 165 ~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
+|+.++.||+++++||+|+++.+.+.++||+|||+||+++|+++++.+..+|+.||++++++|++|.+++.|+||||+|+
T Consensus 79 ~Kv~pi~GDi~~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~ 158 (467)
T KOG1221|consen 79 EKVVPIAGDISEPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYS 158 (467)
T ss_pred ecceeccccccCcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhhe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCCh--HHHHHHhhhccCCCCchHHHHHHHhhhh--hcCCCcEEEEc
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDV--ENEMKLALESKEFSTDGEVAQKMKGLGL--ERGDIPVVIIR 320 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~k~~~~~k~~ae~l~e~~~--~~~glp~~I~R 320 (554)
++.. +.++|++|+.+....++.++... ..++. .++....+.. +++++|+++|+++|..+ ++.++|++|+|
T Consensus 159 n~~~-~~i~E~~y~~~~~~~~~~~i~~~----~~~~~~~ld~~~~~l~~-~~PNTYtfTKal~E~~i~~~~~~lPivIiR 232 (467)
T KOG1221|consen 159 NCNV-GHIEEKPYPMPETCNPEKILKLD----ENLSDELLDQKAPKLLG-GWPNTYTFTKALAEMVIQKEAENLPLVIIR 232 (467)
T ss_pred eccc-ccccccccCccccCCHHHHHhhh----ccchHHHHHHhhHHhcC-CCCCceeehHhhHHHHHHhhccCCCeEEEc
Confidence 9665 68999999988765555433211 11211 1222233333 57888999999999887 56789999999
Q ss_pred cceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCC-CCCeEEEeeC
Q 042694 321 PSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQK-PDINVYQIAS 399 (554)
Q Consensus 321 p~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~-~~~~vyn~~~ 399 (554)
|++|+++..+|+|||+++.++..+++.++|+|.++.+.+|++...|+||||+|+|+++++++..+.... ++..|||+++
T Consensus 233 PsiI~st~~EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~ts 312 (467)
T KOG1221|consen 233 PSIITSTYKEPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTS 312 (467)
T ss_pred CCceeccccCCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecc
Confidence 999999999999999999999999999999999999999999999999999999999999887665333 3478999999
Q ss_pred CCCCcccHHHHHHHHHhHhccCCCCCCCCCeEEeCCcch-----HHHHHHHHHHHHHHHHHHhcccccccccCcchHHHH
Q 042694 400 SVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPSMKL-----FSSMEDFSAHLWRDAIQRSGLTSTANLNGKLPQKLE 474 (554)
Q Consensus 400 ~~~~~it~~e~~~~~~~~~~~~p~~~~~~~~~~~p~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 474 (554)
+..||++|+++.+...+++.+.|+++. +|+|...+ .+.+..+++|++|+++++..+... .+++++.|+|
T Consensus 313 s~~Np~t~~~~~e~~~~~~~~~Pl~~~----iw~P~~~~~sn~~~f~~~~~~~h~lPa~~~d~~~~i~--g~k~~~~k~~ 386 (467)
T KOG1221|consen 313 SNDNPVTWGDFIELALRYFEKIPLEKM----IWYPFGTLTSNPWLFNLAAFLYHTLPAYILDLLLRLL--GKKPRLVKLY 386 (467)
T ss_pred cccCcccHHHHHHHHHHhcccCCcccc----eeccCceeeecHhHHHHHHHHHHHhhHHHHHHHHHHh--CCChhhhHHH
Confidence 999999999999999999999999865 88887755 346778899999999988643321 3566777888
Q ss_pred HHHHHHHHHHHHHHHhccccccceEEEechhHHHHHHhcChhhccccccCCCCCCHHHHHHhhchhHHHHHhhcCCCCCC
Q 042694 475 TICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGRGIHV 554 (554)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~l~~~D~~~F~~d~~~idW~~Y~~~~~~~G~r~y~lke~~~~~ 554 (554)
+++.+ ..++++||++++|+|+++|+.+|++.|+++||++|+||++++||++|+.+ |++|+|+|++||+++++
T Consensus 387 ~ki~~-------~~~~l~~f~~~~w~Fd~~n~~~L~~~~~~~d~~~f~fd~~~ldW~ey~~~-~i~G~r~~llKe~~e~l 458 (467)
T KOG1221|consen 387 RKIHK-------LVKLLEPFSLFKWIFDNKNTEKLREKMSEEDKRLFNFDMKQLDWEEYFNR-HLLGLRKYLLKESPESL 458 (467)
T ss_pred HHHHH-------HHHhhhhheeceEEecCccHHHHHHhCCHHHHhhcCCCcccCCHHHHHHH-HHHHHHHHHhcCChhhh
Confidence 77654 45899999999999999999999999999999999999999999999998 99999999999998764
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-69 Score=575.78 Aligned_cols=432 Identities=39% Similarity=0.678 Sum_probs=342.5
Q ss_pred cchhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-----hhHHHH-------------HHHcCCchhhhc
Q 042694 102 IGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-----ELFKCL-------------KQTYGKSYQAFM 163 (554)
Q Consensus 102 ~~i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-----~~~~~l-------------~~~~~~~~~~~~ 163 (554)
++|.+||++++|||||||||||++|+++||+++++|++|||+.+ ...+|+ ++..+....+..
T Consensus 3 ~~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~ 82 (491)
T PLN02996 3 GSCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLI 82 (491)
T ss_pred ccHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhh
Confidence 46889999999999999999999999999999999999998843 223333 222222222223
Q ss_pred cCcEEEEEccCCCCCCCCCHHH-HHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeec
Q 042694 164 LSKLVPAVGNVCENNLGLEEDL-ADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTA 242 (554)
Q Consensus 164 ~~kv~~v~GDl~~~~lGLs~~~-~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~ 242 (554)
..+++++.||+++++|||++.+ ++.+.+++|+|||+||.+++.++++.+.++|+.||.+++++|++++++++|||+||+
T Consensus 83 ~~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~ 162 (491)
T PLN02996 83 SEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTA 162 (491)
T ss_pred hcCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeee
Confidence 4799999999999999999877 678888999999999999999899999999999999999999987789999999999
Q ss_pred eecccccceeeccccCCCCCcccccccccccCCCCCCChHHHH--------------------H----Hh-hh---ccCC
Q 042694 243 YVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEM--------------------K----LA-LE---SKEF 294 (554)
Q Consensus 243 ~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------------------~----~~-~~---~k~~ 294 (554)
+|||...+.++|++|+++...... ...|.+++. . .. +. ....
T Consensus 163 ~vyG~~~~~i~E~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (491)
T PLN02996 163 YVCGEKSGLILEKPFHMGETLNGN----------RKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGW 232 (491)
T ss_pred EEecCCCceeeeecCCCccccccc----------ccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCC
Confidence 999987678899988765432100 011111100 0 00 01 1123
Q ss_pred CCchHHHHHHHhhhhh--cCCCcEEEEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhH
Q 042694 295 STDGEVAQKMKGLGLE--RGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADM 372 (554)
Q Consensus 295 ~~~k~~ae~l~e~~~~--~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~ 372 (554)
+.+|..+|.++|..+. ..++|++|+||++|+|+.++|++||+++..+...++..++.|..+.++++++..+|+|||||
T Consensus 233 pn~Y~~TK~~aE~lv~~~~~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vdd 312 (491)
T PLN02996 233 PNTYVFTKAMGEMLLGNFKENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADM 312 (491)
T ss_pred CCchHhhHHHHHHHHHHhcCCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccH
Confidence 4456666666665542 35899999999999999999999999998777777777788999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCCCCCCCCCeEEeCCcchHH-----HHHHHHH
Q 042694 373 VVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPSMKLFS-----SMEDFSA 447 (554)
Q Consensus 373 va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~-----~~~~~~~ 447 (554)
||++++++++.... ....+++||++++..+|++|.|+++.+.++++..|+.+..+.++|+|.+.+.. .+..++.
T Consensus 313 vv~a~l~a~~~~~~-~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 391 (491)
T PLN02996 313 VVNAMIVAMAAHAG-GQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPWINKEGSPVKVGKGTILSTMASFSLYMTIR 391 (491)
T ss_pred HHHHHHHHHHHhhc-cCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCCcCCCCCeEeeCCceecCcHHHHHHHHHHH
Confidence 99999999876321 11235799999987789999999999999999999988777889999887643 3446677
Q ss_pred HHHHHHHHHhcccccccccCcchHHHHHHHHHHHHHHHHHHHhccccccceEEEechhHHHHHHhcChhh---ccccccC
Q 042694 448 HLWRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEE---KRKFGFD 524 (554)
Q Consensus 448 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~l~~~D---~~~F~~d 524 (554)
|.+|..+++..........++.+.|+++|+.. +++++++++|||+++|.|+|+|+++|++.|+++| |++|+||
T Consensus 392 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~~~w~f~~~n~~~l~~~~~~~d~~d~~~f~~d 467 (491)
T PLN02996 392 YLLPLKALQLVNIILPKRYGDKYTDLNRKIKL----VMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDFD 467 (491)
T ss_pred HHhHHHHHHHHHHHhhhccChHHHHHHHHHHH----HHHHHHHhhccccceEEEccHHHHHHHHHCCccccccccEeccC
Confidence 77886666432211011245666777776533 4667899999999999999999999999999955 9999999
Q ss_pred CCCCCHHHHHHhhchhHHHHHhhc
Q 042694 525 VGSIDWKEYITNVHIPGLRRHVMK 548 (554)
Q Consensus 525 ~~~idW~~Y~~~~~~~G~r~y~lk 548 (554)
++.+||++|++++|++|+|+|++|
T Consensus 468 ~~~~~w~~y~~~~~~~g~~~y~~k 491 (491)
T PLN02996 468 PKSIDWEDYMTNVHIPGLVKYVLK 491 (491)
T ss_pred cccCCHHHHHHHhhHHHHHHHhcC
Confidence 999999999998789999999997
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=315.09 Aligned_cols=238 Identities=32% Similarity=0.483 Sum_probs=154.2
Q ss_pred EecccccccHHHHHHHHhhCCCccEEEEEcc-----hhHHHHHHHcCCc--hhh---hccCcEEEEEccCCCCCCCCCHH
Q 042694 115 VTGATGFLAKVLIEKILRTVPDVGKIFIINA-----ELFKCLKQTYGKS--YQA---FMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 115 ITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-----~~~~~l~~~~~~~--~~~---~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
|||||||||++|+++||++++.+ +|||+.+ ...+|+++..... +.. ...+||+++.||+++++|||+++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~-~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDV-KIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TT-EEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCc-EEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence 79999999999999999998777 9999854 3466776554432 222 23789999999999999999999
Q ss_pred HHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 185 LADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
+++.|.+++|+||||||.++|..+|++++++||.||++++++|.+. +.++|+|+||+++.+...+.+.|..+++.....
T Consensus 80 ~~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~-~~~~~~~iSTa~v~~~~~~~~~~~~~~~~~~~~ 158 (249)
T PF07993_consen 80 DYQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQG-KRKRFHYISTAYVAGSRPGTIEEKVYPEEEDDL 158 (249)
T ss_dssp HHHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSS-S---EEEEEEGGGTTS-TTT--SSS-HHH--EE
T ss_pred HhhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhc-cCcceEEeccccccCCCCCcccccccccccccc
Confidence 9999999999999999999999999999999999999999999974 556999999988887765444443332111000
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCC-Ccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNR-MMD 343 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~-~~~ 343 (554)
. + ......+|.++||+||++++.+.++.|+|++|+|||.|+|. +.+||.+... ...
T Consensus 159 ~-----------~---------~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~---~~~G~~~~~~~~~~ 215 (249)
T PF07993_consen 159 D-----------P---------PQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGD---SRTGWWNSDDFFPY 215 (249)
T ss_dssp E----------------------TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-S---SSSS---TTBHHHH
T ss_pred h-----------h---------hccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCccccc---CCCceeeccchHHH
Confidence 0 0 00111167888999999999988777999999999999994 4478887655 333
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHH
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNAT 377 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~ai 377 (554)
.+...+..|..+..+++++..+|++|||+||++|
T Consensus 216 ~~~~~~~~~~~p~~~~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 216 LLRSCIALGAFPDLPGDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp HHHHHHHH-EEES-SB---TT--EEEHHHHHHHH
T ss_pred HHHHHHHcCCcccccCCCCceEeEECHHHHHhhC
Confidence 3444456788888878888889999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=303.70 Aligned_cols=274 Identities=23% Similarity=0.304 Sum_probs=203.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-----hhHHHHHHHcCCc--hhhhccCcEEEEEccCCCCCCCCCH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-----ELFKCLKQTYGKS--YQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-----~~~~~l~~~~~~~--~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
++||+||||||||++|+++||.+.+ .+|||+.+ .+..|+++....+ |.+...++|+++.||+++++|||++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~--~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~ 78 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSE 78 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC--CcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCH
Confidence 4799999999999999999998654 58998732 3578888877632 5667889999999999999999999
Q ss_pred HHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCc
Q 042694 184 DLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSI 263 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~ 263 (554)
.+++.|.+++|.|||+||.|++..+|+++...||.||.+++++|.+ ++.|+|+||||++|.......-.+..+.+..
T Consensus 79 ~~~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~-gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~-- 155 (382)
T COG3320 79 RTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAAT-GKPKPLHYVSSISVGETEYYSNFTVDFDEIS-- 155 (382)
T ss_pred HHHHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhc-CCCceeEEEeeeeeccccccCCCcccccccc--
Confidence 9999999999999999999999999999999999999999999998 6899999999999976532110000010000
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
+..+.. -....+|.++||++|.++..+.++ |+|++|+|||.|.|+++ +|-.+...+..
T Consensus 156 -------------~~~~~~-----~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~---tG~~n~~D~~~ 213 (382)
T COG3320 156 -------------PTRNVG-----QGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSR---TGALNTRDFLT 213 (382)
T ss_pred -------------cccccc-----CccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCc---cCccccchHHH
Confidence 000000 011128999999999999999988 99999999999999877 45444433444
Q ss_pred ceeeee-ccceeeeeecCCCcccccchhhHHHHHHHHHHHHhc----ccC---CCCCeEEEeeCCCCCcccHHHHHHHHH
Q 042694 344 PIILYY-GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHG----MIQ---KPDINVYQIASSVVNPLVFQDLARLLH 415 (554)
Q Consensus 344 ~i~~~~-~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~----~~~---~~~~~vyn~~~~~~~~it~~e~~~~~~ 415 (554)
.++..+ ..|..| +.+...|++|+|.++.++...+.... ..+ ......|+ .++....+...++.++..
T Consensus 214 Rlv~~~~~lg~~P----~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~-~~~~~~~i~l~~~~~w~~ 288 (382)
T COG3320 214 RLVLGLLQLGIAP----DSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLH-MLTHPDEIGLDEYVDWLI 288 (382)
T ss_pred HHHHHHHHhCCCC----CcccchhhCccceeeEEeehhhhhHHHHHHHhccCccchhhhee-cccCCCccchhHHHHhHh
Confidence 433322 345554 45667889998888877665443322 001 11124555 334447899999999988
Q ss_pred h
Q 042694 416 E 416 (554)
Q Consensus 416 ~ 416 (554)
+
T Consensus 289 ~ 289 (382)
T COG3320 289 S 289 (382)
T ss_pred h
Confidence 7
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=260.27 Aligned_cols=263 Identities=18% Similarity=0.202 Sum_probs=184.9
Q ss_pred EEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCc
Q 042694 114 FVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEV 193 (554)
Q Consensus 114 lITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~v 193 (554)
|||||+||||++|+++|++.++ +.+|.+++............ ......++.||++++ +++...++++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~~~~~~~~------~~~~~~~~~~Di~d~------~~l~~a~~g~ 67 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPPKFLKDLQ------KSGVKEYIQGDITDP------ESLEEALEGV 67 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCC-ceEEEEcccccccccchhhh------cccceeEEEeccccH------HHHHHHhcCC
Confidence 6999999999999999999885 44666655322111111110 123334899999998 9999999999
Q ss_pred cEEEEcCCCCCch--hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccccccc
Q 042694 194 DVIVNSAANTTFD--ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSN 271 (554)
Q Consensus 194 diViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~ 271 (554)
|+|||+||.+... .+.+.++++||.||++++++|++ .++++|||+||.+|.+.... ..++...+...+
T Consensus 68 d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~-~~VkrlVytSS~~vv~~~~~---~~~~~~~dE~~~------ 137 (280)
T PF01073_consen 68 DVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARK-AGVKRLVYTSSISVVFDNYK---GDPIINGDEDTP------ 137 (280)
T ss_pred ceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEcCcceeEeccC---CCCcccCCcCCc------
Confidence 9999999988765 36788999999999999999999 49999999999999876210 111111110000
Q ss_pred ccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhh---c--CCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 272 SRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLE---R--GDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 272 ~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~---~--~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
++.. ....|..+|+.||+++..+.. + ..+.++++||+.|||+.+..+.. .+.
T Consensus 138 ----~~~~----------~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~---------~~~ 194 (280)
T PF01073_consen 138 ----YPSS----------PLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVP---------RLV 194 (280)
T ss_pred ----cccc----------ccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccc---------hhh
Confidence 1100 001566677788877766543 1 24999999999999987632211 111
Q ss_pred eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhccc---CCCCCeEEEeeCCCCCccc-HHHHHHHHHhHhccCC
Q 042694 347 LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMI---QKPDINVYQIASSVVNPLV-FQDLARLLHEHYSASP 422 (554)
Q Consensus 347 ~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~---~~~~~~vyn~~~~~~~~it-~~e~~~~~~~~~~~~p 422 (554)
..+..|......++++...++++|++||.+++.|+..-... ....++.|+++++ .|++ +.||.+.+.+.+|..+
T Consensus 195 ~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~--~p~~~~~~f~~~~~~~~G~~~ 272 (280)
T PF01073_consen 195 KMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDG--EPVPSFWDFMRPLWEALGYPP 272 (280)
T ss_pred HHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECC--CccCcHHHHHHHHHHHCCCCC
Confidence 12233433344567778899999999999999987643221 2345799999999 7999 9999999999999876
Q ss_pred CC
Q 042694 423 CV 424 (554)
Q Consensus 423 ~~ 424 (554)
+.
T Consensus 273 ~~ 274 (280)
T PF01073_consen 273 PK 274 (280)
T ss_pred Cc
Confidence 64
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=315.89 Aligned_cols=367 Identities=17% Similarity=0.183 Sum_probs=231.7
Q ss_pred ceeeeecc------ccccccccCCchhHHHHHHHHHhhhhceee-----ccccceeeCC-----CCCCC-----cccccc
Q 042694 25 DLCLLRRK------RSIMHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLVLSP-----NGKGH-----AEIVVQ 83 (554)
Q Consensus 25 ~~~~~~~~------~~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~~~~-----~~~~~-----~~~~~~ 83 (554)
+|+.++.. .+.|||++|||||+|++|+++|++++|+.+ ++.||+.... ...+. .....+
T Consensus 856 ~~~~vl~~~~~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~~~~~~~~~~~~~~~ 935 (1389)
T TIGR03443 856 LWLELLPNRPATISPDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLKKGEELADEGDSEIE 935 (1389)
T ss_pred HHHHHhCCCccccCcCcchhhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhhcccccccccccccc
Confidence 68855542 233999999999999999999999999887 3667653210 00000 000001
Q ss_pred ccccc-CCC-CchhHhhhc-------ccchhhhccCcEEEEecccccccHHHHHHHHhhC-CCccEEEEEcch-----hH
Q 042694 84 DLVPF-GGQ-ATSLVELQD-------GIGIVKFLKAKNFFVTGATGFLAKVLIEKILRTV-PDVGKIFIINAE-----LF 148 (554)
Q Consensus 84 ~~~~l-~~~-~~~~~~~~~-------~~~i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~~~-----~~ 148 (554)
..... ... ..++..+.. .......-..++|||||||||+|++|+++|++++ ....+|+|+.+. ..
T Consensus 936 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~ 1015 (1389)
T TIGR03443 936 EEETVLELDYAKDAKTLVDSLPKSYPSRKELDASTPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGL 1015 (1389)
T ss_pred hhcccccchhhhhhhhhhhcccccCCcccccccCCCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHH
Confidence 00000 000 000000000 0000011235799999999999999999999875 123488887542 23
Q ss_pred HHHHHHcCC--chhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHH
Q 042694 149 KCLKQTYGK--SYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEF 226 (554)
Q Consensus 149 ~~l~~~~~~--~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~l 226 (554)
++++..... .+......+++++.||++++.|||+++.+..+.+++|+|||+||.+++..++..+...|+.||.+++++
T Consensus 1016 ~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~ 1095 (1389)
T TIGR03443 1016 ERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGLSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNL 1095 (1389)
T ss_pred HHHHHHHHHhCCCchhhhcceEEEeccCCCccCCcCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHH
Confidence 444332211 011223458999999999999999999999999999999999999999889999889999999999999
Q ss_pred HHHcCCCceEEEEeeceecccccc-eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHH
Q 042694 227 AKQCNKLKLFVQVSTAYVNGQRRG-KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMK 305 (554)
Q Consensus 227 a~~~~~~k~~v~vST~~v~~~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~ 305 (554)
|++ .++++|+|+||.++++.... ...+.....+....++. ..... .......+|.++|+++|.++
T Consensus 1096 a~~-~~~~~~v~vSS~~v~~~~~~~~~~~~~~~~~~~~~~e~---------~~~~~----~~~~~~~~Y~~sK~~aE~l~ 1161 (1389)
T TIGR03443 1096 CAE-GKAKQFSFVSSTSALDTEYYVNLSDELVQAGGAGIPES---------DDLMG----SSKGLGTGYGQSKWVAEYII 1161 (1389)
T ss_pred HHh-CCCceEEEEeCeeecCcccccchhhhhhhccCCCCCcc---------ccccc----ccccCCCChHHHHHHHHHHH
Confidence 998 47899999999999864210 00000000000000000 00000 00001116888899999998
Q ss_pred hhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeee-ccceeeeeecCCCcccccchhhHHHHHHHHHHHHh
Q 042694 306 GLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYY-GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQH 384 (554)
Q Consensus 306 e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~-~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~ 384 (554)
+.+.+. |++++|+||+.|+|+...+. |. .......++... ..|.. ++.....|++|||+|+++++.++...
T Consensus 1162 ~~~~~~-g~~~~i~Rpg~v~G~~~~g~--~~-~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~Vddva~ai~~~~~~~ 1233 (1389)
T TIGR03443 1162 REAGKR-GLRGCIVRPGYVTGDSKTGA--TN-TDDFLLRMLKGCIQLGLI----PNINNTVNMVPVDHVARVVVAAALNP 1233 (1389)
T ss_pred HHHHhC-CCCEEEECCCccccCCCcCC--CC-chhHHHHHHHHHHHhCCc----CCCCCccccccHHHHHHHHHHHHhCC
Confidence 877654 89999999999999865431 21 101111111100 11222 24455689999999999999987543
Q ss_pred cccCCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 385 GMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 385 ~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
.. .....+||++++ .+++|.++++.+.+.
T Consensus 1234 ~~--~~~~~i~~~~~~--~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443 1234 PK--ESELAVAHVTGH--PRIRFNDFLGTLKTY 1262 (1389)
T ss_pred cc--cCCCCEEEeCCC--CCCcHHHHHHHHHHh
Confidence 21 123469999988 689999999999764
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=263.69 Aligned_cols=266 Identities=15% Similarity=0.164 Sum_probs=182.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|+|||||||||||++|+++|++.++ +|+++++.. ...+...... .......++.++.||+.+. +
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~---~V~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Di~d~------~ 82 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQ---TVIGLDNFSTGYQHNLDDVRTS-VSEEQWSRFIFIQGDIRKF------T 82 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCCCcchhhhhhhhhc-cccccCCceEEEEccCCCH------H
Confidence 4678999999999999999999999876 455554321 1111111000 0011224788999999987 7
Q ss_pred HHHHHhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCC
Q 042694 185 LADVIAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGD 261 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~ 261 (554)
.+..+++++|+|||+||.... ..++....++|+.||.+++++|++. ++++|||+||..+|+... +.+..+..
T Consensus 83 ~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~v~~SS~~vyg~~~----~~~~~e~~ 157 (348)
T PRK15181 83 DCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVSSFTYAASSSTYGDHP----DLPKIEER 157 (348)
T ss_pred HHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeechHhhCCCC----CCCCCCCC
Confidence 888888999999999997553 2345678999999999999999984 899999999999998632 11111111
Q ss_pred CcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCC
Q 042694 262 SIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRM 341 (554)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~ 341 (554)
.. .+.+ .|..+|..+|.+++.+.+..+++++++||+.|||+...+.... .. .
T Consensus 158 ~~-------------~p~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~-~~--~ 209 (348)
T PRK15181 158 IG-------------RPLS------------PYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAY-SA--V 209 (348)
T ss_pred CC-------------CCCC------------hhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCcc-cc--C
Confidence 10 0111 4666677888877766666699999999999999875432111 00 0
Q ss_pred ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhcc
Q 042694 342 MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 342 ~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~ 420 (554)
...++..+..|....+.++++...|++||||+|++++.++..... ...+.+||++++ ++++++|+++.+.+.++.
T Consensus 210 i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~--~~~~~~yni~~g--~~~s~~e~~~~i~~~~~~ 284 (348)
T PRK15181 210 IPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDL--ASKNKVYNVAVG--DRTSLNELYYLIRDGLNL 284 (348)
T ss_pred HHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcccc--cCCCCEEEecCC--CcEeHHHHHHHHHHHhCc
Confidence 011111112232223457788889999999999999877653211 113579999998 789999999999988864
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=239.87 Aligned_cols=259 Identities=18% Similarity=0.174 Sum_probs=200.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|++|||||.||||+..++.+++..++. +|.+++.-.++.-.+.... -...++..+++||+++. +....++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~-~v~~~DkLTYAgn~~~l~~---~~~~~~~~fv~~DI~D~------~~v~~~~ 70 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDD-HVVNLDKLTYAGNLENLAD---VEDSPRYRFVQGDICDR------ELVDRLF 70 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCc-eEEEEecccccCCHHHHHh---hhcCCCceEEeccccCH------HHHHHHH
Confidence 579999999999999999999988874 7888875333222222111 11345889999999998 8888888
Q ss_pred c--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 191 K--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 191 ~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
+ ++|+|+|.||..+.+ ..+..+.++||.||.+||++|++.....+|+||||.-|||+... ++..|+|.++..|
T Consensus 71 ~~~~~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~--~~~~FtE~tp~~P 148 (340)
T COG1088 71 KEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGL--DDDAFTETTPYNP 148 (340)
T ss_pred HhcCCCeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccC--CCCCcccCCCCCC
Confidence 7 699999999987765 46789999999999999999998633359999999999998531 2334555444322
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC---ccccccCCCCc
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP---FSGWMEGNRMM 342 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p---~~g~~~~~~~~ 342 (554)
. .+|+.+|+-+..++.......|+|++|.|+++-|||.+.| +|-.+.+
T Consensus 149 s-------------------------SPYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~n---- 199 (340)
T COG1088 149 S-------------------------SPYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIIN---- 199 (340)
T ss_pred C-------------------------CCcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHH----
Confidence 1 1677788888888888887789999999999999998865 3333221
Q ss_pred cceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 343 DPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 343 ~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
+-.|.-..+++++.+.+||++|+|-++|+-..+.... .+++||++++ +..+--|+++.+.+.+++..
T Consensus 200 ------al~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg~-----~GE~YNIgg~--~E~~Nlevv~~i~~~l~~~~ 266 (340)
T COG1088 200 ------ALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKGK-----IGETYNIGGG--NERTNLEVVKTICELLGKDK 266 (340)
T ss_pred ------HHcCCCCceecCCcceeeeEEeHhHHHHHHHHHhcCc-----CCceEEeCCC--ccchHHHHHHHHHHHhCccc
Confidence 2234444566999999999999999999988776532 2689999999 78899999999999999865
Q ss_pred C
Q 042694 423 C 423 (554)
Q Consensus 423 ~ 423 (554)
+
T Consensus 267 ~ 267 (340)
T COG1088 267 P 267 (340)
T ss_pred c
Confidence 4
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=232.49 Aligned_cols=257 Identities=18% Similarity=0.248 Sum_probs=191.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||||||+||||+|.+.+|++.|++| +++|+ ...+.+.. ..+.+++||+.+. +.++
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~v---vV~DNL~~g~~~~v~~-----------~~~~f~~gDi~D~------~~L~ 60 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEV---VVLDNLSNGHKIALLK-----------LQFKFYEGDLLDR------ALLT 60 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeE---EEEecCCCCCHHHhhh-----------ccCceEEeccccH------HHHH
Confidence 579999999999999999999988754 44442 11111111 0157899999988 7788
Q ss_pred HHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCC
Q 042694 188 VIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 188 ~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
++++ ++|.|||+||..... +.+-+.++.||.||.+|+++|++. +++.|||-||+.|||... ..|++|+.+
T Consensus 61 ~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~-gv~~~vFSStAavYG~p~----~~PI~E~~~ 135 (329)
T COG1087 61 AVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQT-GVKKFIFSSTAAVYGEPT----TSPISETSP 135 (329)
T ss_pred HHHHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHh-CCCEEEEecchhhcCCCC----CcccCCCCC
Confidence 7776 799999999986653 456688999999999999999995 899999999999999853 234444333
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcc-ccccCCCC
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFS-GWMEGNRM 341 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~-g~~~~~~~ 341 (554)
..| .+ .|..+|.+.|++........++.++++|-.++.|+..++.- .|-.+...
T Consensus 136 ~~p-------------~N------------PYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~th 190 (329)
T COG1087 136 LAP-------------IN------------PYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATL 190 (329)
T ss_pred CCC-------------CC------------cchhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcch
Confidence 221 11 67788889999888777777899999999999997664422 22222222
Q ss_pred ccceeeeeccceeeee--e------cCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHH
Q 042694 342 MDPIILYYGKGQLTGF--L------VDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARL 413 (554)
Q Consensus 342 ~~~i~~~~~~G~~~~~--~------~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~ 413 (554)
.-|++..++.|..+.+ . .|+.+++|+|||.|+|+++++|..+-...+ ...+||++++ +-.|..|+++.
T Consensus 191 Lip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~~g--~~~~~NLG~G--~G~SV~evi~a 266 (329)
T COG1087 191 LIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGG--SNNIFNLGSG--NGFSVLEVIEA 266 (329)
T ss_pred HHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHhCC--ceeEEEccCC--CceeHHHHHHH
Confidence 3333434444444322 1 456789999999999999999988755422 2379999999 79999999999
Q ss_pred HHhHhccC
Q 042694 414 LHEHYSAS 421 (554)
Q Consensus 414 ~~~~~~~~ 421 (554)
+.+..|+.
T Consensus 267 ~~~vtg~~ 274 (329)
T COG1087 267 AKKVTGRD 274 (329)
T ss_pred HHHHhCCc
Confidence 99999965
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=236.37 Aligned_cols=266 Identities=19% Similarity=0.182 Sum_probs=189.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.+++|+|||||||||++|++.||.+|+.|+ --+.+... .+-+++... ..+++..+.+||.++ +.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~-gtVR~~~~~k~~~~L~~l~~------a~~~l~l~~aDL~d~------~s 71 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVR-GTVRDPEDEKKTEHLRKLEG------AKERLKLFKADLLDE------GS 71 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEE-EEEcCcchhhhHHHHHhccc------CcccceEEecccccc------ch
Confidence 578999999999999999999999999873 22222221 122333221 356789999999999 89
Q ss_pred HHHHhcCccEEEEcCCCCCchhh--HHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceee-ccccCCCCC
Q 042694 186 ADVIAKEVDVIVNSAANTTFDER--YDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVM-EKPFCMGDS 262 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~~~~--~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~-E~~~~~~~~ 262 (554)
+...+++||.|||+|+.+.|+.. ..++++.+|.||.++|+.|++.+.+||+|++||+.+......... ...++|.
T Consensus 72 f~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~-- 149 (327)
T KOG1502|consen 72 FDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEE-- 149 (327)
T ss_pred HHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccc--
Confidence 99999999999999999998543 558999999999999999999777999999999987654311111 1111111
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCc
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMM 342 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~ 342 (554)
++...+.....+ .+|.-+|.+||+.+....++.|++.+.+-|+.|+||.-.|.+. ..
T Consensus 150 ------------~wsd~~~~~~~~-----~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~------~s 206 (327)
T KOG1502|consen 150 ------------SWSDLDFCRCKK-----LWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLN------SS 206 (327)
T ss_pred ------------cCCcHHHHHhhH-----HHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccc------hh
Confidence 112222211111 2677778888888888877779999999999999976644221 11
Q ss_pred cceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 343 DPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 343 ~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
...+..+-.|....+ ++....+|+|+|||+|++.+.+.+.. ...|+|+++ ..++.|+++.+.+.+...+
T Consensus 207 ~~~~l~~i~G~~~~~---~n~~~~~VdVrDVA~AHv~a~E~~~a-----~GRyic~~~---~~~~~ei~~~l~~~~P~~~ 275 (327)
T KOG1502|consen 207 LNALLKLIKGLAETY---PNFWLAFVDVRDVALAHVLALEKPSA-----KGRYICVGE---VVSIKEIADILRELFPDYP 275 (327)
T ss_pred HHHHHHHHhcccccC---CCCceeeEeHHHHHHHHHHHHcCccc-----CceEEEecC---cccHHHHHHHHHHhCCCCC
Confidence 111222234443322 45556699999999999999987654 358999987 4569999999999988776
Q ss_pred C
Q 042694 423 C 423 (554)
Q Consensus 423 ~ 423 (554)
.
T Consensus 276 i 276 (327)
T KOG1502|consen 276 I 276 (327)
T ss_pred C
Confidence 4
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=245.05 Aligned_cols=272 Identities=22% Similarity=0.314 Sum_probs=188.5
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcch-----hHHHHHHHcCCch---hhhccCcEEEEEccCCCCCCCCCH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-----LFKCLKQTYGKSY---QAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-----~~~~l~~~~~~~~---~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+|||||||||||++|+++|+++++.. +|+|+.+. ..+++++...... ......++.++.||++++.+||++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~-~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~ 79 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQA-KVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD 79 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCC-EEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence 58999999999999999999987543 78877532 2334443321110 000115899999999999999999
Q ss_pred HHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCc
Q 042694 184 DLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSI 263 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~ 263 (554)
+++..+.+++|+|||+||.+++..+++.+.+.|+.|+.+++++|.+ .+.++|||+||.++++.... . ...+.+..
T Consensus 80 ~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~-~~~~~~v~iSS~~v~~~~~~--~--~~~~~~~~ 154 (367)
T TIGR01746 80 AEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAAS-GRAKPLHYVSTISVLAAIDL--S--TVTEDDAI 154 (367)
T ss_pred HHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhh-CCCceEEEEccccccCCcCC--C--Cccccccc
Confidence 9999999999999999999998889999999999999999999998 47888999999999876321 0 01111110
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
.+ +... . ...|..+|+.+|.++..+.+. |++++|+|||.|+|+... |.........
T Consensus 155 ~~-----------~~~~--------~-~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~---g~~~~~~~~~ 210 (367)
T TIGR01746 155 VT-----------PPPG--------L-AGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYT---GAINSSDILW 210 (367)
T ss_pred cc-----------cccc--------c-CCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCC---CCCCchhHHH
Confidence 00 0000 0 015777888888888766554 899999999999997432 2211111111
Q ss_pred ceeee-eccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 344 PIILY-YGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 344 ~i~~~-~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
.++.. ...|..+ .......+++||||++++++.++..... ...+++||++++ ++++|.|+++.+.+ .|..
T Consensus 211 ~~~~~~~~~~~~p---~~~~~~~~~~~vddva~ai~~~~~~~~~--~~~~~~~~v~~~--~~~s~~e~~~~i~~-~g~~ 281 (367)
T TIGR01746 211 RMVKGCLALGAYP---DSPELTEDLTPVDYVARAIVALSSQPAA--SAGGPVFHVVNP--EPVSLDEFLEWLER-AGYN 281 (367)
T ss_pred HHHHHHHHhCCCC---CCCccccCcccHHHHHHHHHHHHhCCCc--ccCCceEEecCC--CCCCHHHHHHHHHH-cCCC
Confidence 11110 1122222 2222367899999999999988754321 011579999998 79999999999998 6653
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=245.36 Aligned_cols=284 Identities=15% Similarity=0.169 Sum_probs=178.5
Q ss_pred cCcEEEEecccccccHHHHHHHHhhC-CCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTV-PDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+.|+|||||||||||++|+++|++.+ + +|++++... .......+.. ......+++++.||+.++ +.+.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~---~V~~l~r~~-~~~~~l~~~~-~~~~~~~~~~~~~Dl~d~------~~l~ 81 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH---KVLALDVYN-DKIKHLLEPD-TVPWSGRIQFHRINIKHD------SRLE 81 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC---EEEEEecCc-hhhhhhhccc-cccCCCCeEEEEcCCCCh------HHHH
Confidence 45789999999999999999999873 4 566665321 1111111100 000224789999999987 8888
Q ss_pred HHhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc-eeecc-ccCCCCC
Q 042694 188 VIAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG-KVMEK-PFCMGDS 262 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~-~i~E~-~~~~~~~ 262 (554)
.+++++|+|||+||.+.. .....+.+..|+.|+.+++++|++. + ++|||+||.++|+...+ .++|. +..+...
T Consensus 82 ~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~ 159 (386)
T PLN02427 82 GLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPA 159 (386)
T ss_pred HHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C-CEEEEEeeeeeeCCCcCCCCCcccccccccc
Confidence 888899999999997543 2334456778999999999999884 4 89999999999986421 11111 1100000
Q ss_pred c--ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCC
Q 042694 263 I--AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNR 340 (554)
Q Consensus 263 ~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~ 340 (554)
. ..++.. +.++.+.. .....|..+|..+|.++....+..+++++|+||+.|||+.....++......
T Consensus 160 ~~~~~e~~~---~~~~~~~~--------~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~ 228 (386)
T PLN02427 160 FYVLKEDES---PCIFGSIE--------KQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSE 228 (386)
T ss_pred ccccccccc---ccccCCCC--------ccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCcccccccccc
Confidence 0 000000 00000000 0001456667777777765555569999999999999987643332100000
Q ss_pred Ccccee----eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHh
Q 042694 341 MMDPII----LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHE 416 (554)
Q Consensus 341 ~~~~i~----~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~ 416 (554)
....++ .....|....+.++++..+|+|||||+|++++.++..... ..+++||++++. +++++.|+++.+.+
T Consensus 229 ~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~---~~g~~yni~~~~-~~~s~~el~~~i~~ 304 (386)
T PLN02427 229 GVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPAR---ANGHIFNVGNPN-NEVTVRQLAEMMTE 304 (386)
T ss_pred ccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCccc---ccCceEEeCCCC-CCccHHHHHHHHHH
Confidence 000111 1111222223445667788999999999999988764321 124799999862 38999999999999
Q ss_pred Hhcc
Q 042694 417 HYSA 420 (554)
Q Consensus 417 ~~~~ 420 (554)
.++.
T Consensus 305 ~~g~ 308 (386)
T PLN02427 305 VYAK 308 (386)
T ss_pred Hhcc
Confidence 9885
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=259.58 Aligned_cols=266 Identities=21% Similarity=0.323 Sum_probs=183.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
|+|||||||||||++|+++|++.... .+|+++.+. ...++...... ....+++++.||+.++.+|++.+.++.+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g-~~V~~l~R~~~~~~~~~~~~~----~~~~~v~~~~~Dl~~~~~~~~~~~~~~l 75 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVRRQSLSRLEALAAY----WGADRVVPLVGDLTEPGLGLSEADIAEL 75 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC-CEEEEEECcchHHHHHHHHHh----cCCCcEEEEecccCCccCCcCHHHHHHh
Confidence 47999999999999999999952222 267766542 22222221110 0125789999999999999999999888
Q ss_pred hcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccccc
Q 042694 190 AKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFV 269 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~ 269 (554)
+++|+||||||.+++...+....++|+.||.+++++|++. +.++|||+||.++++...+..+|...+++.
T Consensus 76 -~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~~SS~~v~g~~~~~~~e~~~~~~~-------- 145 (657)
T PRK07201 76 -GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERL-QAATFHHVSSIAVAGDYEGVFREDDFDEGQ-------- 145 (657)
T ss_pred -cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhc-CCCeEEEEeccccccCccCccccccchhhc--------
Confidence 8999999999998887778888999999999999999985 789999999999988643222222111000
Q ss_pred ccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCc---ccee
Q 042694 270 SNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMM---DPII 346 (554)
Q Consensus 270 ~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~---~~i~ 346 (554)
... ..|..+|+.+|.++.. ..+++++|+||+.|||+... +..++.... ...+
T Consensus 146 -------~~~------------~~Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~---g~~~~~~~~~~~~~~~ 200 (657)
T PRK07201 146 -------GLP------------TPYHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRT---GEMDKIDGPYYFFKVL 200 (657)
T ss_pred -------CCC------------CchHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCC---CccccCCcHHHHHHHH
Confidence 000 0355566666666542 35899999999999997652 211111000 0111
Q ss_pred eeecc-ceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 347 LYYGK-GQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 347 ~~~~~-G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
...+. .....+.++.....+++||||++++++.++.... ..+++||++++ +++++.|+++.+.+.+|.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~----~~g~~~ni~~~--~~~s~~el~~~i~~~~g~~~ 271 (657)
T PRK07201 201 AKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHKDG----RDGQTFHLTDP--KPQRVGDIYNAFARAAGAPP 271 (657)
T ss_pred HHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcCcC----CCCCEEEeCCC--CCCcHHHHHHHHHHHhCCCc
Confidence 11110 0111122344567899999999999988775322 23579999998 79999999999999998765
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=260.96 Aligned_cols=266 Identities=20% Similarity=0.227 Sum_probs=184.7
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.+|++|+|||||||||||++|+++|++.++++ +|++++... ...+....+. ....++.++.||+.++ +
T Consensus 2 ~~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~-~V~~~d~~~~~~~~~~l~~~----~~~~~v~~~~~Dl~d~------~ 70 (668)
T PLN02260 2 ATYEPKNILITGAAGFIASHVANRLIRNYPDY-KIVVLDKLDYCSNLKNLNPS----KSSPNFKFVKGDIASA------D 70 (668)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHhCCCC-EEEEEeCCCccchhhhhhhc----ccCCCeEEEECCCCCh------H
Confidence 46889999999999999999999999986655 677776421 1111111110 0234788999999987 5
Q ss_pred HHHHHh--cCccEEEEcCCCCCchh---hHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCC
Q 042694 185 LADVIA--KEVDVIVNSAANTTFDE---RYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 185 ~~~~l~--~~vdiViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
....+. .++|+|||+||..+... ...+..++|+.||.+++++|++.+.+++|||+||..+|+....... ....+
T Consensus 71 ~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~-~~~~E 149 (668)
T PLN02260 71 LVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAD-VGNHE 149 (668)
T ss_pred HHHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccc-cCccc
Confidence 555543 58999999999876543 3457889999999999999998655899999999999986421000 00001
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCC
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGN 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~ 339 (554)
..+. .+. ..|..+|..+|.++..+.+..+++++|+||++|||+...+. ..+
T Consensus 150 ~~~~-------------~p~------------~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~-~~i--- 200 (668)
T PLN02260 150 ASQL-------------LPT------------NPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE-KLI--- 200 (668)
T ss_pred cCCC-------------CCC------------CCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcc-cHH---
Confidence 0000 000 14666677888877766555689999999999999865321 111
Q ss_pred CCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhc
Q 042694 340 RMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYS 419 (554)
Q Consensus 340 ~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~ 419 (554)
..++.....|....++++++..++++||||+|+++..++.... .+++||++++ +++++.|+++.+.+.+|
T Consensus 201 ---~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~~~-----~~~vyni~~~--~~~s~~el~~~i~~~~g 270 (668)
T PLN02260 201 ---PKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGE-----VGHVYNIGTK--KERRVIDVAKDICKLFG 270 (668)
T ss_pred ---HHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhcCC-----CCCEEEECCC--CeeEHHHHHHHHHHHhC
Confidence 0111111223222345777888999999999999988765321 2479999998 78999999999999998
Q ss_pred cCC
Q 042694 420 ASP 422 (554)
Q Consensus 420 ~~p 422 (554)
..+
T Consensus 271 ~~~ 273 (668)
T PLN02260 271 LDP 273 (668)
T ss_pred CCC
Confidence 653
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=239.69 Aligned_cols=260 Identities=16% Similarity=0.185 Sum_probs=178.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+++|||||||||||++|+++|++.+.++ ++++++... ......... ....++.++.+|+.++ +.++.
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~--v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~------~~~~~ 68 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDA--VVVVDKLTYAGNLMSLAPV----AQSERFAFEKVDICDR------AELAR 68 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCE--EEEEecCccccchhhhhhc----ccCCceEEEECCCcCh------HHHHH
Confidence 3689999999999999999999987653 334442110 011100000 0123678899999988 77777
Q ss_pred Hhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHc--------CCCceEEEEeeceecccccceeecc
Q 042694 189 IAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQC--------NKLKLFVQVSTAYVNGQRRGKVMEK 255 (554)
Q Consensus 189 l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~--------~~~k~~v~vST~~v~~~~~~~i~E~ 255 (554)
+++ ++|+|||+||..... +.++...++|+.||.+++++|.+. +++++|||+||..+|+...+ ...
T Consensus 69 ~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~--~~~ 146 (355)
T PRK10217 69 VFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHS--TDD 146 (355)
T ss_pred HHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCC--CCC
Confidence 776 499999999986543 356789999999999999999863 35689999999999985321 011
Q ss_pred ccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcccc
Q 042694 256 PFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGW 335 (554)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~ 335 (554)
+.++..+. .+.. .|..+|..+|.+++...+..+++++|+||+.|||+...+ .++
T Consensus 147 ~~~E~~~~-------------~p~s------------~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~-~~~ 200 (355)
T PRK10217 147 FFTETTPY-------------APSS------------PYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFP-EKL 200 (355)
T ss_pred CcCCCCCC-------------CCCC------------hhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCc-ccH
Confidence 12211110 1111 455667778888777665679999999999999987532 111
Q ss_pred ccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHH
Q 042694 336 MEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLH 415 (554)
Q Consensus 336 ~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~ 415 (554)
+. .++.....|....+.++++...|++||||+|.+++.++.... .+++||++++ +++++.|+++.+.
T Consensus 201 ~~------~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~-----~~~~yni~~~--~~~s~~~~~~~i~ 267 (355)
T PRK10217 201 IP------LMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCVATTGK-----VGETYNIGGH--NERKNLDVVETIC 267 (355)
T ss_pred HH------HHHHHHhcCCCceEeCCCCeeeCcCcHHHHHHHHHHHHhcCC-----CCCeEEeCCC--CcccHHHHHHHHH
Confidence 11 111111223222344778889999999999999988875421 2479999999 7999999999999
Q ss_pred hHhccCC
Q 042694 416 EHYSASP 422 (554)
Q Consensus 416 ~~~~~~p 422 (554)
+.+++.+
T Consensus 268 ~~~~~~~ 274 (355)
T PRK10217 268 ELLEELA 274 (355)
T ss_pred HHhcccc
Confidence 9988643
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=243.23 Aligned_cols=280 Identities=11% Similarity=0.101 Sum_probs=180.1
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------HHHHHHHcCCchhhhccCc
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------FKCLKQTYGKSYQAFMLSK 166 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------~~~l~~~~~~~~~~~~~~k 166 (554)
...++|+|||||||||||++|+++|++.|.+ |+++++.. .+++.. +......+
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~ 114 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYE---VAIVDNLCRRLFDHQLGLDSLTPIASIHERVRR-----WKEVSGKE 114 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCe---EEEEeccccccccccccccccccccchHHHHHH-----HHHhhCCc
Confidence 3467899999999999999999999998764 44443110 011110 00001236
Q ss_pred EEEEEccCCCCCCCCCHHHHHHHhc--CccEEEEcCCCCCch------hhHHHHHHHhchHHHHHHHHHHHcCCCc-eEE
Q 042694 167 LVPAVGNVCENNLGLEEDLADVIAK--EVDVIVNSAANTTFD------ERYDIAIDINTRGPCRLMEFAKQCNKLK-LFV 237 (554)
Q Consensus 167 v~~v~GDl~~~~lGLs~~~~~~l~~--~vdiViH~AA~v~~~------~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~v 237 (554)
+.++.||++++ +.+..+++ ++|+|||+||..... ......+++|+.||.+++++|++. +++ +||
T Consensus 115 v~~v~~Dl~d~------~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~-gv~~~~V 187 (442)
T PLN02572 115 IELYVGDICDF------EFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF-APDCHLV 187 (442)
T ss_pred ceEEECCCCCH------HHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh-CCCccEE
Confidence 88999999988 77777766 599999999874321 123455789999999999999985 665 899
Q ss_pred EEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEE
Q 042694 238 QVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVV 317 (554)
Q Consensus 238 ~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~ 317 (554)
|+||..+||.....++|.+.++.... .++.. +.+..+.+ .|..+|..+|.++....+..|++++
T Consensus 188 ~~SS~~vYG~~~~~~~E~~i~~~~~~-~e~~~---~~~~~P~s------------~Yg~SK~a~E~l~~~~~~~~gl~~v 251 (442)
T PLN02572 188 KLGTMGEYGTPNIDIEEGYITITHNG-RTDTL---PYPKQASS------------FYHLSKVHDSHNIAFTCKAWGIRAT 251 (442)
T ss_pred EEecceecCCCCCCCccccccccccc-ccccc---cCCCCCCC------------cchhHHHHHHHHHHHHHHhcCCCEE
Confidence 99999999863222333322211000 00000 00001111 5667778888888776666799999
Q ss_pred EEccceeeecccCCc---cccccCC-------CCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhccc
Q 042694 318 IIRPSVIESTCKEPF---SGWMEGN-------RMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMI 387 (554)
Q Consensus 318 I~Rp~~V~g~~~~p~---~g~~~~~-------~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~ 387 (554)
++||+.|||+...+. +..+..+ .....++..+..|....+.++++..+|+++|||+|++++.++......
T Consensus 252 ~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~ 331 (442)
T PLN02572 252 DLNQGVVYGVRTDETMMDEELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKP 331 (442)
T ss_pred EEecccccCCCCcccccccccccccCcccchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhc
Confidence 999999999875431 1111110 001111112223432234577888899999999999999887643211
Q ss_pred CCCCCeEEEeeCCCCCcccHHHHHHHHHhH---hccC
Q 042694 388 QKPDINVYQIASSVVNPLVFQDLARLLHEH---YSAS 421 (554)
Q Consensus 388 ~~~~~~vyn~~~~~~~~it~~e~~~~~~~~---~~~~ 421 (554)
+ ...+||+++. ++++.|+++.+.+. .|..
T Consensus 332 g--~~~i~Nigs~---~~si~el~~~i~~~~~~~g~~ 363 (442)
T PLN02572 332 G--EFRVFNQFTE---QFSVNELAKLVTKAGEKLGLD 363 (442)
T ss_pred C--ceeEEEeCCC---ceeHHHHHHHHHHHHHhhCCC
Confidence 1 2368999753 69999999999998 6643
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=235.48 Aligned_cols=271 Identities=16% Similarity=0.138 Sum_probs=177.7
Q ss_pred CcEEEEecccccccHHHHHHHHhh-CCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+|+|||||||||+|++|+++|++. ++ +|++++... ....... ...++.++.+|+.++ .+....
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~---~V~~~~r~~-~~~~~~~-------~~~~~~~~~~Dl~~~-----~~~~~~ 64 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW---EVYGMDMQT-DRLGDLV-------NHPRMHFFEGDITIN-----KEWIEY 64 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC---eEEEEeCcH-HHHHHhc-------cCCCeEEEeCCCCCC-----HHHHHH
Confidence 368999999999999999999975 34 566665421 1111111 124688999999843 266777
Q ss_pred HhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 189 IAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
+.+++|+|||+||.... ..++...+++|+.||.+++++|++. + ++|||+||..+|+...+ .++.++++..
T Consensus 65 ~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~-~~~v~~SS~~vyg~~~~----~~~~ee~~~~- 137 (347)
T PRK11908 65 HVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSEVYGMCPD----EEFDPEASPL- 137 (347)
T ss_pred HHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C-CeEEEEecceeeccCCC----cCcCcccccc-
Confidence 78899999999996442 3456778899999999999999985 5 79999999999986421 1122111100
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC-CCCccc
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG-NRMMDP 344 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~-~~~~~~ 344 (554)
... +..+. .. .|..+|..+|.+++......+++++|+||+.|||+...++..--.. ......
T Consensus 138 -~~~-------~~~~p---~~------~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~ 200 (347)
T PRK11908 138 -VYG-------PINKP---RW------IYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQ 200 (347)
T ss_pred -ccC-------cCCCc---cc------hHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHH
Confidence 000 00000 00 3455567777777666556799999999999999876432110000 001111
Q ss_pred eeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCCC
Q 042694 345 IILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPC 423 (554)
Q Consensus 345 i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p~ 423 (554)
++..+..|.-..+.++++..+|+|||+|++++++.++..... ...+++||++++. +.+|++|+++.+.+.++..|.
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~--~~~g~~yni~~~~-~~~s~~e~~~~i~~~~~~~~~ 276 (347)
T PRK11908 201 FLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKDG--VASGKIYNIGNPK-NNHSVRELANKMLELAAEYPE 276 (347)
T ss_pred HHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCccc--cCCCCeEEeCCCC-CCcCHHHHHHHHHHHhcCccc
Confidence 111112232223445677789999999999999998765321 1225799999852 479999999999999986553
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=243.21 Aligned_cols=252 Identities=17% Similarity=0.150 Sum_probs=172.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+.|+|||||||||||++|+++|++.+++ |+.+++.. .+.+.... ...++..+.+|+.++.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~---V~~ldr~~~~~~~~~~~~~-------~~~~~~~~~~Di~~~~------- 181 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDE---VIVIDNFFTGRKENLVHLF-------GNPRFELIRHDVVEPI------- 181 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCE---EEEEeCCCCccHhHhhhhc-------cCCceEEEECcccccc-------
Confidence 4579999999999999999999998864 45554321 11111100 1236778899987651
Q ss_pred HHHHhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc-eeeccccCCCC
Q 042694 186 ADVIAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG-KVMEKPFCMGD 261 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~-~i~E~~~~~~~ 261 (554)
..++|+|||+||.... ..+....+++|+.||.+++++|++. +. +|||+||.+||+...+ .++|..+....
T Consensus 182 ----~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~ 255 (436)
T PLN02166 182 ----LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPLEHPQKETYWGNVN 255 (436)
T ss_pred ----ccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECcHHHhCCCCCCCCCccccccCC
Confidence 2479999999996542 3456788999999999999999985 44 8999999999986421 12232111100
Q ss_pred CcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCC
Q 042694 262 SIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRM 341 (554)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~ 341 (554)
+. .+.+ .|..+|..+|.++..+.+..+++++++||++|||+...+..+. .
T Consensus 256 p~-------------~p~s------------~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~-----~ 305 (436)
T PLN02166 256 PI-------------GERS------------CYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGR-----V 305 (436)
T ss_pred CC-------------CCCC------------chHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccc-----h
Confidence 10 0001 4666678888887776666689999999999999764321110 1
Q ss_pred ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 342 MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 342 ~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
...++..+..|....+.++++..+|+++|+|++++++.++... ...+||++++ +++++.|+++.+.+.++..
T Consensus 306 i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~~------~~giyNIgs~--~~~Si~ela~~I~~~~g~~ 377 (436)
T PLN02166 306 VSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGE------HVGPFNLGNP--GEFTMLELAEVVKETIDSS 377 (436)
T ss_pred HHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhcC------CCceEEeCCC--CcEeHHHHHHHHHHHhCCC
Confidence 1111111222222234577778899999999999998887532 1359999998 7899999999999998854
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=240.63 Aligned_cols=255 Identities=15% Similarity=0.146 Sum_probs=170.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+|||||||||||++|++.|++++++ |+++++....+ .+.... .....++..+.+|+.++
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~---V~~ld~~~~~~-~~~~~~---~~~~~~~~~i~~D~~~~---------- 179 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDS---VIVVDNFFTGR-KENVMH---HFSNPNFELIRHDVVEP---------- 179 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCE---EEEEeCCCccc-hhhhhh---hccCCceEEEECCccCh----------
Confidence 46789999999999999999999998864 45554321111 111100 01124678889998765
Q ss_pred HHhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc-eeeccccCCCCCc
Q 042694 188 VIAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG-KVMEKPFCMGDSI 263 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~-~i~E~~~~~~~~~ 263 (554)
...++|+|||+||.... ..+....+++|+.||.+++++|++. +. +|||+||..||+.... ...|..+.+..+
T Consensus 180 -~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P- 255 (442)
T PLN02206 180 -ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPLQHPQVETYWGNVNP- 255 (442)
T ss_pred -hhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECChHHhCCCCCCCCCccccccCCC-
Confidence 12479999999996542 3456788999999999999999985 54 8999999999986421 122221110000
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
..+.. .|..+|..+|.++..+.+..+++++++||+.|||+......+- ...
T Consensus 256 ------------~~~~s------------~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~-----~v~ 306 (442)
T PLN02206 256 ------------IGVRS------------CYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGR-----VVS 306 (442)
T ss_pred ------------CCccc------------hHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccc-----hHH
Confidence 00001 3555567777777665555689999999999999764211110 011
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhcc
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~ 420 (554)
.++.....+....++++++..+|+++|+|+|++++.++... ...+||++++ +++++.|+++.+.+.++.
T Consensus 307 ~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~~------~~g~yNIgs~--~~~sl~Elae~i~~~~g~ 375 (442)
T PLN02206 307 NFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE------HVGPFNLGNP--GEFTMLELAKVVQETIDP 375 (442)
T ss_pred HHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhcC------CCceEEEcCC--CceeHHHHHHHHHHHhCC
Confidence 11111112222234567777899999999999999887532 1358999998 789999999999999874
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=249.49 Aligned_cols=277 Identities=14% Similarity=0.149 Sum_probs=184.8
Q ss_pred cchhhhccCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCC
Q 042694 102 IGIVKFLKAKNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLG 180 (554)
Q Consensus 102 ~~i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lG 180 (554)
.+.+.+.++|+|||||||||+|++|+++|++. ++ +|+++++... ...... ...+++++.||+.++
T Consensus 307 ~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~---~V~~l~r~~~-~~~~~~-------~~~~~~~~~gDl~d~--- 372 (660)
T PRK08125 307 KPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY---EVYGLDIGSD-AISRFL-------GHPRFHFVEGDISIH--- 372 (660)
T ss_pred cchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc---EEEEEeCCch-hhhhhc-------CCCceEEEeccccCc---
Confidence 45567788999999999999999999999975 45 4555543211 111111 124688899999986
Q ss_pred CCHHHHHHHhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc-eeeccc
Q 042694 181 LEEDLADVIAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG-KVMEKP 256 (554)
Q Consensus 181 Ls~~~~~~l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~-~i~E~~ 256 (554)
.+..+.+++++|+|||+||.... .......+++|+.||.+++++|++. + ++|||+||.++|+...+ .++|.
T Consensus 373 --~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~-~~~V~~SS~~vyg~~~~~~~~E~- 447 (660)
T PRK08125 373 --SEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N-KRIIFPSTSEVYGMCTDKYFDED- 447 (660)
T ss_pred --HHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C-CeEEEEcchhhcCCCCCCCcCcc-
Confidence 23356666899999999997653 3445678899999999999999985 5 79999999999986321 12222
Q ss_pred cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccc
Q 042694 257 FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWM 336 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~ 336 (554)
.+..+. . +... ....|..+|..+|.++..+.+..|++++++||++|||+........-
T Consensus 448 ----~~~~~~-----~----p~~~---------p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~ 505 (660)
T PRK08125 448 ----TSNLIV-----G----PINK---------QRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAAR 505 (660)
T ss_pred ----cccccc-----C----CCCC---------CccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCcccccccc
Confidence 110000 0 0000 00046667788888887766666899999999999998653211100
Q ss_pred c-CCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHH
Q 042694 337 E-GNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLH 415 (554)
Q Consensus 337 ~-~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~ 415 (554)
. .......++..+..|....+.++++..+|+++|+|+|++++.++..... ...+++||++++. ++++++|+++.+.
T Consensus 506 ~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~~--~~~g~iyni~~~~-~~~s~~el~~~i~ 582 (660)
T PRK08125 506 IGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKDN--RCDGQIINIGNPD-NEASIRELAEMLL 582 (660)
T ss_pred ccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhcccc--ccCCeEEEcCCCC-CceeHHHHHHHHH
Confidence 0 0000111111122233333456778889999999999999988764211 1135799999872 3799999999999
Q ss_pred hHhccCC
Q 042694 416 EHYSASP 422 (554)
Q Consensus 416 ~~~~~~p 422 (554)
+..+..+
T Consensus 583 ~~~g~~~ 589 (660)
T PRK08125 583 ASFEKHP 589 (660)
T ss_pred HHhccCc
Confidence 9998654
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=227.96 Aligned_cols=255 Identities=17% Similarity=0.201 Sum_probs=177.5
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|||||||||+|++|+++|++.+++. +|++++... .+++.... ...++.++.+|++++ +++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~------~~~~ 66 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDA-EVIVLDKLTYAGNLENLADLE-------DNPRYRFVKGDIGDR------ELVS 66 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCC-EEEEecCCCcchhhhhhhhhc-------cCCCcEEEEcCCcCH------HHHH
Confidence 58999999999999999999877544 666665311 11111110 123678899999988 8888
Q ss_pred HHhcC--ccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCC
Q 042694 188 VIAKE--VDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 188 ~l~~~--vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
.+.++ +|+|||+||.+... +..+.+.++|+.|+.+++++|++...-.++||+||..+++.... ..++++..+
T Consensus 67 ~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~---~~~~~e~~~ 143 (317)
T TIGR01181 67 RLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEK---GDAFTETTP 143 (317)
T ss_pred HHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCC---CCCcCCCCC
Confidence 88776 99999999986543 35677899999999999999987422238999999999886421 112222211
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCc
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMM 342 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~ 342 (554)
. .+.. .|..+|+.+|.+++.+....+++++|+||+.|||+...+ .+++.
T Consensus 144 ~-------------~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~-~~~~~----- 192 (317)
T TIGR01181 144 L-------------APSS------------PYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFP-EKLIP----- 192 (317)
T ss_pred C-------------CCCC------------chHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCc-ccHHH-----
Confidence 0 1111 466667778887776655568999999999999976432 11111
Q ss_pred cceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 343 DPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 343 ~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
.++.....|....+.++++...+++|+||+++++..++.... .+++||++++ .++++.|+++.+.+.++.++
T Consensus 193 -~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~~-----~~~~~~~~~~--~~~s~~~~~~~i~~~~~~~~ 264 (317)
T TIGR01181 193 -LMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKGR-----VGETYNIGGG--NERTNLEVVETILELLGKDE 264 (317)
T ss_pred -HHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCCC-----CCceEEeCCC--CceeHHHHHHHHHHHhCCCc
Confidence 111111222222234667778999999999999988875321 2479999998 78999999999999998653
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=234.40 Aligned_cols=260 Identities=14% Similarity=0.052 Sum_probs=173.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|+|||||||||||++|++.|++.+++ |.++++.....+ .. ....+..+.+|+.+. +.+..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~---V~~v~r~~~~~~----~~-----~~~~~~~~~~Dl~d~------~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHY---IIASDWKKNEHM----SE-----DMFCHEFHLVDLRVM------ENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCE---EEEEEecccccc----cc-----ccccceEEECCCCCH------HHHHH
Confidence 5689999999999999999999998875 444443110000 00 011246788999887 77777
Q ss_pred HhcCccEEEEcCCCCC---c-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 189 IAKEVDVIVNSAANTT---F-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 189 l~~~vdiViH~AA~v~---~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
+.+++|+|||+||.+. + ...+......|+.++.+++++|++. ++++|||+||..+|+......++.++.+.+..
T Consensus 82 ~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~- 159 (370)
T PLN02695 82 VTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVKRFFYASSACIYPEFKQLETNVSLKESDAW- 159 (370)
T ss_pred HHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCCEEEEeCchhhcCCccccCcCCCcCcccCC-
Confidence 7789999999998753 2 2234556788999999999999984 78999999999999864211011112221100
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
+..+.+ .|..+|..+|.++.......|++++|+||+.|||+......+ .......
T Consensus 160 ----------p~~p~s------------~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~---~~~~~~~ 214 (370)
T PLN02695 160 ----------PAEPQD------------AYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGG---REKAPAA 214 (370)
T ss_pred ----------CCCCCC------------HHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCcccc---ccccHHH
Confidence 001111 344456667777666555679999999999999976421100 0000111
Q ss_pred eeeee-ccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 345 IILYY-GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 345 i~~~~-~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
++..+ ..+....++++++...++++|+|++++++.++... ...+||++++ ++++++|+++.+.+..|..
T Consensus 215 ~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~~------~~~~~nv~~~--~~~s~~el~~~i~~~~g~~ 284 (370)
T PLN02695 215 FCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKSD------FREPVNIGSD--EMVSMNEMAEIALSFENKK 284 (370)
T ss_pred HHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhcc------CCCceEecCC--CceeHHHHHHHHHHHhCCC
Confidence 11111 11112234577888899999999999998876432 1368999998 7999999999999888864
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=230.53 Aligned_cols=259 Identities=15% Similarity=0.125 Sum_probs=170.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH--H-HHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF--K-CLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~--~-~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++++|||||||||||++|+++|+++|++| .++.+..- . ........ ...++.++.+|+.++ +
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V---~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~------~ 73 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTV---KGTVRNPDDPKNTHLRELEG-----GKERLILCKADLQDY------E 73 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEE---EEEeCCchhhhHHHHHHhhC-----CCCcEEEEecCcCCh------H
Confidence 357899999999999999999999988754 33322110 0 00111110 124688899999988 8
Q ss_pred HHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeec-eecccccceeeccccCCCCCc
Q 042694 185 LADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTA-YVNGQRRGKVMEKPFCMGDSI 263 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~-~v~~~~~~~i~E~~~~~~~~~ 263 (554)
.+..+++++|+|||+||... ..+...+++|+.||.+++++|++. ++++|||+||. .+|+..... .+.++++.+.
T Consensus 74 ~~~~~~~~~d~Vih~A~~~~--~~~~~~~~~nv~gt~~ll~aa~~~-~v~r~V~~SS~~avyg~~~~~-~~~~~~E~~~- 148 (342)
T PLN02214 74 ALKAAIDGCDGVFHTASPVT--DDPEQMVEPAVNGAKFVINAAAEA-KVKRVVITSSIGAVYMDPNRD-PEAVVDESCW- 148 (342)
T ss_pred HHHHHHhcCCEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeccceeeeccCCCC-CCcccCcccC-
Confidence 88888889999999999753 456788999999999999999984 78999999996 577642110 0011221110
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
...+.. .. ....|..+|..+|.++..+.+..|++++++||+.|||+...+. . .. ...
T Consensus 149 -------------~~~~~~--~~---p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~--~-~~--~~~ 205 (342)
T PLN02214 149 -------------SDLDFC--KN---TKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPT--I-NA--SLY 205 (342)
T ss_pred -------------CChhhc--cc---cccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCC--C-Cc--hHH
Confidence 000000 00 0013555677788877766655699999999999999865431 1 00 001
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhcc
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~ 420 (554)
.++ ....|....+ ++...++|+|+|||++++.++..... +..||+++. ++++.|+++.+.+.++.
T Consensus 206 ~~~-~~~~g~~~~~---~~~~~~~i~V~Dva~a~~~al~~~~~-----~g~yn~~~~---~~~~~el~~~i~~~~~~ 270 (342)
T PLN02214 206 HVL-KYLTGSAKTY---ANLTQAYVDVRDVALAHVLVYEAPSA-----SGRYLLAES---ARHRGEVVEILAKLFPE 270 (342)
T ss_pred HHH-HHHcCCcccC---CCCCcCeeEHHHHHHHHHHHHhCccc-----CCcEEEecC---CCCHHHHHHHHHHHCCC
Confidence 111 1112222221 34568999999999999998865321 358999864 67999999999998853
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=228.19 Aligned_cols=265 Identities=17% Similarity=0.137 Sum_probs=169.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|||||||||||++|+++|++.|++| .+...+............. .....++.++.||+.++ +.+..
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V-~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~------~~~~~ 72 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTV-KATVRDPNDPKKTEHLLAL---DGAKERLHLFKANLLEE------GSFDS 72 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEE-EEEEcCCCchhhHHHHHhc---cCCCCceEEEeccccCc------chHHH
Confidence 46899999999999999999999988755 2222222211111111000 00124788999999998 77888
Q ss_pred HhcCccEEEEcCCCCCc--hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee--cccccceeeccccCCCCCcc
Q 042694 189 IAKEVDVIVNSAANTTF--DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV--NGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~--~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v--~~~~~~~i~E~~~~~~~~~~ 264 (554)
+++++|+|||+||.+.. ..+....+++|+.||.+++++|.+..++++|||+||.++ |+... ...+.+.+++.+..
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~-~~~~~~~~E~~~~~ 151 (322)
T PLN02662 73 VVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKP-LTPDVVVDETWFSD 151 (322)
T ss_pred HHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcC-CCCCCcCCcccCCC
Confidence 88999999999997643 233347889999999999999987547899999999864 44311 00111111111100
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
+ . ........|..+|..+|.++..+.+..+++++++||+.|||+...+..+... ..
T Consensus 152 p----------------~---~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~-----~~ 207 (322)
T PLN02662 152 P----------------A---FCEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSA-----EA 207 (322)
T ss_pred h----------------h---HhhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchH-----HH
Confidence 0 0 0000000455667777777766655669999999999999986543211110 00
Q ss_pred eeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 345 IILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 345 i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
+..+..|.. ..++..+|+|+|+|+|++++.++..... ...||+++ .+++++|+++.+.+.++..
T Consensus 208 -~~~~~~~~~----~~~~~~~~~i~v~Dva~a~~~~~~~~~~-----~~~~~~~g---~~~s~~e~~~~i~~~~~~~ 271 (322)
T PLN02662 208 -ILNLINGAQ----TFPNASYRWVDVRDVANAHIQAFEIPSA-----SGRYCLVE---RVVHYSEVVKILHELYPTL 271 (322)
T ss_pred -HHHHhcCCc----cCCCCCcCeEEHHHHHHHHHHHhcCcCc-----CCcEEEeC---CCCCHHHHHHHHHHHCCCC
Confidence 111111211 1134568999999999999988764321 24688874 4799999999999987643
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=227.25 Aligned_cols=263 Identities=16% Similarity=0.141 Sum_probs=172.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEE-Ecch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFI-INAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~-~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.+++|||||||||||++++++|++.|++| ++ .++. ..+.+...... .....+++++.+|++++ +.+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V---~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~------~~~ 71 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTV---KATVRDLTDRKKTEHLLAL---DGAKERLKLFKADLLEE------SSF 71 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEE---EEEECCCcchHHHHHHHhc---cCCCCceEEEecCCCCc------chH
Confidence 46899999999999999999999988754 42 3321 11222221110 00134788999999998 788
Q ss_pred HHHhcCccEEEEcCCCCCch--hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccccee-eccccCCCCCc
Q 042694 187 DVIAKEVDVIVNSAANTTFD--ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKV-MEKPFCMGDSI 263 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i-~E~~~~~~~~~ 263 (554)
..+.+++|+|||+||.+... ++....+++|+.||.+++++|++.+++++|||+||..++....... .+..+++.+..
T Consensus 72 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~ 151 (322)
T PLN02986 72 EQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFS 151 (322)
T ss_pred HHHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCC
Confidence 88888999999999976542 3345678999999999999998755789999999987643211101 11112211110
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
. + +. .. .....|..+|..+|.++..+.+..+++++++||+.|||+...+..+.. .
T Consensus 152 ~------------p--~~----~~-~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~------~ 206 (322)
T PLN02986 152 D------------P--SL----CR-ETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFS------V 206 (322)
T ss_pred C------------h--HH----hh-ccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCcc------H
Confidence 0 0 00 00 000146667778887777766666999999999999998754321111 0
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhcc
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~ 420 (554)
..+..+..|.. .+ +....++|+|+|+|++++.++..... ...||+++ .++++.|+++.+.+.++.
T Consensus 207 ~~~~~~~~g~~-~~---~~~~~~~v~v~Dva~a~~~al~~~~~-----~~~yni~~---~~~s~~e~~~~i~~~~~~ 271 (322)
T PLN02986 207 ELIVDFINGKN-LF---NNRFYRFVDVRDVALAHIKALETPSA-----NGRYIIDG---PIMSVNDIIDILRELFPD 271 (322)
T ss_pred HHHHHHHcCCC-CC---CCcCcceeEHHHHHHHHHHHhcCccc-----CCcEEEec---CCCCHHHHHHHHHHHCCC
Confidence 11111111221 11 23457999999999999998865322 24899954 479999999999998764
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=226.94 Aligned_cols=266 Identities=16% Similarity=0.180 Sum_probs=170.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++|||||||||||++|+++|++.+++| .+...+......+...... . ...++.++.||++++ +.+.
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V-~~~~r~~~~~~~~~~~~~~--~--~~~~~~~~~~Dl~d~------~~~~ 75 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAV-NTTVRDPENQKKIAHLRAL--Q--ELGDLKIFGADLTDE------ESFE 75 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEE-EEEECCCCCHHHHHHHHhc--C--CCCceEEEEcCCCCh------HHHH
Confidence 357899999999999999999999988754 2223332211111110000 0 113688899999988 7788
Q ss_pred HHhcCccEEEEcCCCCCch--hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccc-----ceeeccccCCC
Q 042694 188 VIAKEVDVIVNSAANTTFD--ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRR-----GKVMEKPFCMG 260 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~-----~~i~E~~~~~~ 260 (554)
.+.+++|+|||+||...+. .+...++++|+.|+.+++++|.+..++++|||+||..+++... ..++|......
T Consensus 76 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~ 155 (338)
T PLN00198 76 APIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDV 155 (338)
T ss_pred HHHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCch
Confidence 8888999999999976543 3344678999999999999998755689999999999987431 12233221100
Q ss_pred CCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC-ccccccCC
Q 042694 261 DSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP-FSGWMEGN 339 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p-~~g~~~~~ 339 (554)
... .+. .++ ...|..+|..+|.+++.+.+..+++++++||+.|||+...+ .+.++.
T Consensus 156 ~~~-~~~--------~~p------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~-- 212 (338)
T PLN00198 156 EFL-TSE--------KPP------------TWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLS-- 212 (338)
T ss_pred hhh-hhc--------CCc------------cchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHH--
Confidence 000 000 001 11466677888888777666678999999999999987532 111110
Q ss_pred CCccceeeeeccceeeeeec-----CCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHH
Q 042694 340 RMMDPIILYYGKGQLTGFLV-----DPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLL 414 (554)
Q Consensus 340 ~~~~~i~~~~~~G~~~~~~~-----~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~ 414 (554)
.+..+..|......+ ..+...|++||||+|++++.++..... ...|+. ++ .++++.|+++.+
T Consensus 213 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~~~-----~~~~~~-~~--~~~s~~el~~~i 279 (338)
T PLN00198 213 -----LAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCRAHIFLAEKESA-----SGRYIC-CA--ANTSVPELAKFL 279 (338)
T ss_pred -----HHHHHHcCCccccccccccccccCCcceeEHHHHHHHHHHHhhCcCc-----CCcEEE-ec--CCCCHHHHHHHH
Confidence 000000111000001 012347999999999999988765321 236754 44 478999999999
Q ss_pred HhHhcc
Q 042694 415 HEHYSA 420 (554)
Q Consensus 415 ~~~~~~ 420 (554)
.+.++.
T Consensus 280 ~~~~~~ 285 (338)
T PLN00198 280 IKRYPQ 285 (338)
T ss_pred HHHCCC
Confidence 987754
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=230.07 Aligned_cols=257 Identities=17% Similarity=0.196 Sum_probs=175.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
|+|||||||||||++|+++|++.+.. .++.++... ...+.... ...++.++.+|+.+. +.+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~--~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~d~------~~~ 65 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD--SVVNVDKLTYAGNLESLADVS-------DSERYVFEHADICDR------AEL 65 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC--eEEEecCCCccchHHHHHhcc-------cCCceEEEEecCCCH------HHH
Confidence 47999999999999999999998754 244444211 11111100 123577899999988 777
Q ss_pred HHHhc--CccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHc--------CCCceEEEEeeceecccccc--e
Q 042694 187 DVIAK--EVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQC--------NKLKLFVQVSTAYVNGQRRG--K 251 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~--------~~~k~~v~vST~~v~~~~~~--~ 251 (554)
..+++ ++|+|||+||.++. ....+...++|+.||.+++++|++. ++.++|||+||.++|+.... .
T Consensus 66 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~ 145 (352)
T PRK10084 66 DRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDE 145 (352)
T ss_pred HHHHHhcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCcccc
Confidence 77765 58999999998654 2346789999999999999999863 24679999999999986321 0
Q ss_pred ee-cc---ccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 252 VM-EK---PFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 252 i~-E~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
+. +. ++++.++ ..+.+ .|..+|..+|.++....+..|++++++||+.|||+
T Consensus 146 ~~~~~~~~~~~E~~~-------------~~p~~------------~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp 200 (352)
T PRK10084 146 VENSEELPLFTETTA-------------YAPSS------------PYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGP 200 (352)
T ss_pred ccccccCCCccccCC-------------CCCCC------------hhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCC
Confidence 00 00 0111111 01111 46666777888777665556899999999999997
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccH
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVF 407 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~ 407 (554)
...+ .+.+ ..++..+..|....+.++++...|+++|||+|++++.++... ..+++||++++ +++++
T Consensus 201 ~~~~-~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~~-----~~~~~yni~~~--~~~s~ 266 (352)
T PRK10084 201 YHFP-EKLI------PLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALYKVVTEG-----KAGETYNIGGH--NEKKN 266 (352)
T ss_pred CcCc-cchH------HHHHHHHhcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHhcC-----CCCceEEeCCC--CcCcH
Confidence 6422 1111 111111112222234467788899999999999998877532 12579999998 78999
Q ss_pred HHHHHHHHhHhccC
Q 042694 408 QDLARLLHEHYSAS 421 (554)
Q Consensus 408 ~e~~~~~~~~~~~~ 421 (554)
.|+++.+.+..+..
T Consensus 267 ~~~~~~i~~~~~~~ 280 (352)
T PRK10084 267 LDVVLTICDLLDEI 280 (352)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999998864
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=221.52 Aligned_cols=263 Identities=19% Similarity=0.214 Sum_probs=191.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++.+|+||||+||||.||+++|++.+.. .+|.++|.... ..+..+.. .....++..+.||+.+. ....
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~-~~irv~D~~~~~~~~~~e~~----~~~~~~v~~~~~D~~~~------~~i~ 71 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELK-LEIRVVDKTPTQSNLPAELT----GFRSGRVTVILGDLLDA------NSIS 71 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccc-cEEEEeccCccccccchhhh----cccCCceeEEecchhhh------hhhh
Confidence 4578999999999999999999998753 47777764221 11211110 01256889999999987 7777
Q ss_pred HHhcCccEEEEcCCCCC--chh-hHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 188 VIAKEVDVIVNSAANTT--FDE-RYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~--~~~-~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
....++ .|+||||... +.. +.+...++||.||+++++.|.+. ++++|||+||++|.......+. -+|+.
T Consensus 72 ~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~-~v~~lIYtSs~~Vvf~g~~~~n---~~E~~--- 143 (361)
T KOG1430|consen 72 NAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL-GVKRLIYTSSAYVVFGGEPIIN---GDESL--- 143 (361)
T ss_pred hhccCc-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh-CCCEEEEecCceEEeCCeeccc---CCCCC---
Confidence 777889 8888888754 333 58899999999999999999995 9999999999999776431010 01111
Q ss_pred cccccccccCCCC--CCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCc
Q 042694 265 KENFVSNSRRLIP--TLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMM 342 (554)
Q Consensus 265 ~~~~~~~~~~~~~--~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~ 342 (554)
++| ..| .|+.+|..+|+++..+....++..+++||+.|||+.+.-+.
T Consensus 144 ----------p~p~~~~d------------~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~--------- 192 (361)
T KOG1430|consen 144 ----------PYPLKHID------------PYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLL--------- 192 (361)
T ss_pred ----------CCcccccc------------ccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCcccc---------
Confidence 112 111 67788888998888776566799999999999998763211
Q ss_pred cceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhc-ccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 343 DPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHG-MIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 343 ~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~-~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
..+...+..|......++.+...|+++++.|+.++++|..... ......+++|+++++ +|+...+++..+.+.+|..
T Consensus 193 ~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~--~p~~~~~~~~~l~~~lg~~ 270 (361)
T KOG1430|consen 193 PKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALLDKSPSVNGQFYFITDD--TPVRFFDFLSPLVKALGYC 270 (361)
T ss_pred HHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHHhcCCccCceEEEEeCC--CcchhhHHHHHHHHhcCCC
Confidence 1222233445555555677888999999999999999876644 323456899999999 7888888888999999976
Q ss_pred CC
Q 042694 422 PC 423 (554)
Q Consensus 422 p~ 423 (554)
++
T Consensus 271 ~~ 272 (361)
T KOG1430|consen 271 LP 272 (361)
T ss_pred CC
Confidence 55
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=224.52 Aligned_cols=265 Identities=13% Similarity=0.097 Sum_probs=173.1
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH--HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF--KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~--~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
|.++|+|||||||||||+++++.|++.+++ |+.+++... ........ ...++..+.+|+.++ +
T Consensus 1 ~~~~k~ilItGatG~IG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~------~ 65 (349)
T TIGR02622 1 FWQGKKVLVTGHTGFKGSWLSLWLLELGAE---VYGYSLDPPTSPNLFELLN------LAKKIEDHFGDIRDA------A 65 (349)
T ss_pred CcCCCEEEEECCCChhHHHHHHHHHHCCCE---EEEEeCCCccchhHHHHHh------hcCCceEEEccCCCH------H
Confidence 356899999999999999999999998865 444432111 11111110 123577899999988 7
Q ss_pred HHHHHhc--CccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCC
Q 042694 185 LADVIAK--EVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 185 ~~~~l~~--~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
++..+.+ ++|+|||+||.... ...+...+++|+.|+.+++++|+.....++||++||..+|+.... ..++.+
T Consensus 66 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~---~~~~~e 142 (349)
T TIGR02622 66 KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEW---VWGYRE 142 (349)
T ss_pred HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCC---CCCCcc
Confidence 7877776 47999999996433 234567889999999999999987533789999999999875311 011111
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc-------CCCcEEEEccceeeecccCCc
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER-------GDIPVVIIRPSVIESTCKEPF 332 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~-------~glp~~I~Rp~~V~g~~~~p~ 332 (554)
..+. .+.. .|..+|..+|.+++..... .+++++++||+.|||+.....
T Consensus 143 ~~~~-------------~p~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~ 197 (349)
T TIGR02622 143 TDPL-------------GGHD------------PYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAE 197 (349)
T ss_pred CCCC-------------CCCC------------cchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchh
Confidence 1110 1111 4555666666666544321 389999999999999753110
Q ss_pred cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHH
Q 042694 333 SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLAR 412 (554)
Q Consensus 333 ~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~ 412 (554)
.. ....++..+..|.... .++++..+|++||||+|++++.++..........+++||++++..++++..|+++
T Consensus 198 ~~------~~~~~~~~~~~g~~~~-~~~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~ 270 (349)
T TIGR02622 198 DR------LIPDVIRAFSSNKIVI-IRNPDATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVV 270 (349)
T ss_pred hh------hhHHHHHHHhcCCCeE-ECCCCcccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHH
Confidence 01 1111111122232222 3567888999999999999998776421101112469999975336899999999
Q ss_pred HHHhHhccC
Q 042694 413 LLHEHYSAS 421 (554)
Q Consensus 413 ~~~~~~~~~ 421 (554)
.+.+.++..
T Consensus 271 ~i~~~~~~~ 279 (349)
T TIGR02622 271 DALEFWWGD 279 (349)
T ss_pred HHHHHhcCC
Confidence 998876643
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=226.90 Aligned_cols=259 Identities=17% Similarity=0.109 Sum_probs=174.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
|+|||||||||||++|+++|++.|++ |+++++.. .+++...... .......++.++.||+++. +.+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~------~~l 70 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYE---VHGLIRRSSSFNTQRIEHIYED-PHNVNKARMKLHYGDLTDS------SNL 70 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCE---EEEEecCCcccchhhhhhhhhc-cccccccceeEEEeccCCH------HHH
Confidence 58999999999999999999998864 45443221 1222211100 0000124688999999987 777
Q ss_pred HHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCC---ceEEEEeeceecccccceeeccccC
Q 042694 187 DVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKL---KLFVQVSTAYVNGQRRGKVMEKPFC 258 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~---k~~v~vST~~v~~~~~~~i~E~~~~ 258 (554)
..+++ ++|+|||+||..... +......++|+.||.+++++|++. ++ ++|||+||..+||... +.+..
T Consensus 71 ~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~-~~~~~~~~v~~SS~~vyg~~~----~~~~~ 145 (343)
T TIGR01472 71 RRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTL-GLIKSVKFYQASTSELYGKVQ----EIPQN 145 (343)
T ss_pred HHHHHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHh-CCCcCeeEEEeccHHhhCCCC----CCCCC
Confidence 77776 479999999976532 234566788999999999999984 44 4899999999998632 11222
Q ss_pred CCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC
Q 042694 259 MGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG 338 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~ 338 (554)
+..+. .+.. .|..+|..+|.++..+.+..++++++.|+..++|+.... ..+..
T Consensus 146 E~~~~-------------~p~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~--~~~~~ 198 (343)
T TIGR01472 146 ETTPF-------------YPRS------------PYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGE--NFVTR 198 (343)
T ss_pred CCCCC-------------CCCC------------hhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCc--cccch
Confidence 21111 1111 456667788888877666668999999999988865311 11100
Q ss_pred CCCccceeeeeccce-eeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 339 NRMMDPIILYYGKGQ-LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 339 ~~~~~~i~~~~~~G~-~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
.....+..+..|. ...+.++++...|+++|||+|++++.++.... ..+||++++ +++|+.|+++.+.+.
T Consensus 199 --~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a~~~~~~~~~------~~~yni~~g--~~~s~~e~~~~i~~~ 268 (343)
T TIGR01472 199 --KITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEAMWLMLQQDK------PDDYVIATG--ETHSVREFVEVSFEY 268 (343)
T ss_pred --HHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHHHHHHHhcCC------CccEEecCC--CceeHHHHHHHHHHH
Confidence 0011111112232 23345778889999999999999998875421 258999998 799999999999999
Q ss_pred hccC
Q 042694 418 YSAS 421 (554)
Q Consensus 418 ~~~~ 421 (554)
+|+.
T Consensus 269 ~g~~ 272 (343)
T TIGR01472 269 IGKT 272 (343)
T ss_pred cCCC
Confidence 8864
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=221.83 Aligned_cols=265 Identities=12% Similarity=0.126 Sum_probs=172.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.+|+|||||||||||++|+++|++.|++| .+...+............. .....++..+.+|++++ +.++.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V-~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~d~------~~~~~ 73 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTI-NATVRDPKDRKKTDHLLAL---DGAKERLKLFKADLLDE------GSFEL 73 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEE-EEEEcCCcchhhHHHHHhc---cCCCCceEEEeCCCCCc------hHHHH
Confidence 36899999999999999999999988754 2222222211111111100 00124788899999998 78888
Q ss_pred HhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccccee-eccccCCCCCcc
Q 042694 189 IAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKV-MEKPFCMGDSIA 264 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i-~E~~~~~~~~~~ 264 (554)
+++++|+|||+||.... .+++...+++|+.|+.+++++|.+..+.++||++||..+++...... .+.+++|..+..
T Consensus 74 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 153 (325)
T PLN02989 74 AIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTN 153 (325)
T ss_pred HHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCc
Confidence 88899999999997543 23567889999999999999998754578999999987765321000 111122211110
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
|. ........|..+|..+|.++..+.+..|++++|+||+.|||+...+..+.. ..
T Consensus 154 p~-------------------~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~------~~ 208 (325)
T PLN02989 154 PS-------------------FAEERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFS------VA 208 (325)
T ss_pred hh-------------------HhcccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCch------HH
Confidence 00 000001146667778888777666666999999999999998765422111 01
Q ss_pred eeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhcc
Q 042694 345 IILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 345 i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~ 420 (554)
.+.....|..+ + .....++++|+|+|++++.++..... ..+||+++ .+++++|+++.+.+.++.
T Consensus 209 ~i~~~~~~~~~-~---~~~~r~~i~v~Dva~a~~~~l~~~~~-----~~~~ni~~---~~~s~~ei~~~i~~~~~~ 272 (325)
T PLN02989 209 VIVELMKGKNP-F---NTTHHRFVDVRDVALAHVKALETPSA-----NGRYIIDG---PVVTIKDIENVLREFFPD 272 (325)
T ss_pred HHHHHHcCCCC-C---CCcCcCeeEHHHHHHHHHHHhcCccc-----CceEEEec---CCCCHHHHHHHHHHHCCC
Confidence 11111112211 1 12346899999999999988765321 25899954 479999999999999864
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=223.26 Aligned_cols=246 Identities=13% Similarity=0.106 Sum_probs=157.2
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH-HHHHh-
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL-ADVIA- 190 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~-~~~l~- 190 (554)
|||||||||||++|+++|++.|.++ +..+++..... .. .....+|+.+.. +.++ .+.+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~--v~~~~~~~~~~---~~-----------~~~~~~~~~d~~---~~~~~~~~~~~ 62 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITD--ILVVDNLKDGT---KF-----------VNLVDLDIADYM---DKEDFLAQIMA 62 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCce--EEEecCCCcch---HH-----------Hhhhhhhhhhhh---hHHHHHHHHhc
Confidence 7999999999999999999987543 44444321000 00 011234443320 1122 33333
Q ss_pred ----cCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc-eeeccccCCCCCcc
Q 042694 191 ----KEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG-KVMEKPFCMGDSIA 264 (554)
Q Consensus 191 ----~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~-~i~E~~~~~~~~~~ 264 (554)
.++|+|||+||.... .......++.|+.||.+++++|++. +. +|||+||+++|+...+ .++|.. +
T Consensus 63 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~-~~-~~i~~SS~~vyg~~~~~~~~E~~-----~-- 133 (308)
T PRK11150 63 GDDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTDDFIEERE-----Y-- 133 (308)
T ss_pred ccccCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEcchHHhCcCCCCCCccCC-----C--
Confidence 269999999985432 1234567899999999999999985 55 6999999999986421 122211 0
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
..+.+ .|..+|..+|.+++.+....+++++++||+.|||+...+ .+.+.. ....
T Consensus 134 -----------~~p~~------------~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~-~~~~~~--~~~~ 187 (308)
T PRK11150 134 -----------EKPLN------------VYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGH-KGSMAS--VAFH 187 (308)
T ss_pred -----------CCCCC------------HHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCC-CCccch--hHHH
Confidence 01111 345556777777766655568999999999999976532 111110 0000
Q ss_pred eeeeeccceee-eeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhcc
Q 042694 345 IILYYGKGQLT-GFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 345 i~~~~~~G~~~-~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~ 420 (554)
+...+..|..+ .+.++++..+|++||||+|++++.++... .+.+||++++ +++++.|+++.+.+..+.
T Consensus 188 ~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~------~~~~yni~~~--~~~s~~el~~~i~~~~~~ 256 (308)
T PRK11150 188 LNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWENG------VSGIFNCGTG--RAESFQAVADAVLAYHKK 256 (308)
T ss_pred HHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhcC------CCCeEEcCCC--CceeHHHHHHHHHHHhCC
Confidence 00112223222 23355667899999999999998877542 1359999998 789999999999999875
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=222.19 Aligned_cols=264 Identities=16% Similarity=0.176 Sum_probs=166.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
.++|||||||||||++|+++|++.+.+| .+...+....+.+...... .....++.++.||+.++ +.++.+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V-~~~~r~~~~~~~~~~~~~~---~~~~~~~~~v~~Dl~d~------~~~~~~ 74 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTV-RATVRDPANVKKVKHLLDL---PGATTRLTLWKADLAVE------GSFDDA 74 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEE-EEEEcCcchhHHHHHHHhc---cCCCCceEEEEecCCCh------hhHHHH
Confidence 5689999999999999999999988754 2222222222222211100 00123688899999988 778888
Q ss_pred hcCccEEEEcCCCCCch--hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccc-cCCCCCcccc
Q 042694 190 AKEVDVIVNSAANTTFD--ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKP-FCMGDSIAKE 266 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~-~~~~~~~~~~ 266 (554)
++++|+|||+||..... .+....+++|+.||.+++++|.+..++++|||+||.++++...+ +.+ +++...
T Consensus 75 ~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~---~~~~~~E~~~---- 147 (351)
T PLN02650 75 IRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEH---QKPVYDEDCW---- 147 (351)
T ss_pred HhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCC---CCCccCcccC----
Confidence 88999999999976542 23357889999999999999998544789999999977654211 011 111100
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc--cccccCCCCccc
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF--SGWMEGNRMMDP 344 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~--~g~~~~~~~~~~ 344 (554)
...+... ........|..+|..+|.++..+.+..|++++++||++|||+...+. +..+. .
T Consensus 148 ----------~~~~~~~--~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~------~ 209 (351)
T PLN02650 148 ----------SDLDFCR--RKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLIT------A 209 (351)
T ss_pred ----------Cchhhhh--ccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHH------H
Confidence 0000000 00000013566677777777766666799999999999999865421 11110 0
Q ss_pred eeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhcc
Q 042694 345 IILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 345 i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~ 420 (554)
+. ...|....+ + .....|+++|+|+|++++.++..... ..+|+ +++ .++++.|+++.+.+.++.
T Consensus 210 -~~-~~~~~~~~~-~-~~~~r~~v~V~Dva~a~~~~l~~~~~-----~~~~i-~~~--~~~s~~el~~~i~~~~~~ 273 (351)
T PLN02650 210 -LS-LITGNEAHY-S-IIKQGQFVHLDDLCNAHIFLFEHPAA-----EGRYI-CSS--HDATIHDLAKMLREKYPE 273 (351)
T ss_pred -HH-HhcCCcccc-C-cCCCcceeeHHHHHHHHHHHhcCcCc-----CceEE-ecC--CCcCHHHHHHHHHHhCcc
Confidence 00 001111101 1 11246999999999999988764321 24684 455 578999999999997763
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=220.01 Aligned_cols=250 Identities=24% Similarity=0.270 Sum_probs=175.7
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK 191 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~ 191 (554)
+|||||||||||++|++.|++.+++| +.++..... ... ....+..+.+|+.+. +....+.+
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V---~~~~r~~~~-----~~~-----~~~~~~~~~~d~~~~------~~~~~~~~ 62 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDV---RGLDRLRDG-----LDP-----LLSGVEFVVLDLTDR------DLVDELAK 62 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeE---EEEeCCCcc-----ccc-----cccccceeeecccch------HHHHHHHh
Confidence 49999999999999999999988765 333321000 000 013567889999887 67777777
Q ss_pred Cc-cEEEEcCCCCCchhh----HHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccc-c-eeeccccCCCCCcc
Q 042694 192 EV-DVIVNSAANTTFDER----YDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRR-G-KVMEKPFCMGDSIA 264 (554)
Q Consensus 192 ~v-diViH~AA~v~~~~~----~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~-~-~i~E~~~~~~~~~~ 264 (554)
.+ |+|||+||....... +.....+|+.||.+++++|++ .++++|||.||.++++... + .++|.. .+.
T Consensus 63 ~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~~ss~~~~~~~~~~~~~~E~~----~~~- 136 (314)
T COG0451 63 GVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVFASSVSVVYGDPPPLPIDEDL----GPP- 136 (314)
T ss_pred cCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeCCCceECCCCCCCCccccc----CCC-
Confidence 77 999999999876443 346899999999999999998 6899999988888777531 1 222221 000
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc-cccccCCCCcc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF-SGWMEGNRMMD 343 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~-~g~~~~~~~~~ 343 (554)
.+.+ .|..+|..+|.++.......|++++|+||+.|||+...+. +++.- .
T Consensus 137 ------------~p~~------------~Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~-----~ 187 (314)
T COG0451 137 ------------RPLN------------PYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVV-----S 187 (314)
T ss_pred ------------CCCC------------HHHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcH-----H
Confidence 0000 2455567777777666555689999999999999876542 22211 1
Q ss_pred ceeeeeccce-eeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCC-cccHHHHHHHHHhHhccC
Q 042694 344 PIILYYGKGQ-LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVN-PLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 344 ~i~~~~~~G~-~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~-~it~~e~~~~~~~~~~~~ 421 (554)
.++.....|. ...+.++.....++++|||++.+++.++..... . +||++++ . +++.+|+.+.+.+..+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~-----~-~~ni~~~--~~~~~~~e~~~~~~~~~~~~ 259 (314)
T COG0451 188 AFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDG-----G-VFNIGSG--TAEITVRELAEAVAEAVGSK 259 (314)
T ss_pred HHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCCC-----c-EEEeCCC--CCcEEHHHHHHHHHHHhCCC
Confidence 1111122233 234556667778999999999999998875332 2 9999998 5 899999999999999987
Q ss_pred CC
Q 042694 422 PC 423 (554)
Q Consensus 422 p~ 423 (554)
+.
T Consensus 260 ~~ 261 (314)
T COG0451 260 AP 261 (314)
T ss_pred Cc
Confidence 55
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=220.68 Aligned_cols=268 Identities=14% Similarity=0.160 Sum_probs=175.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---h---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---L---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
+++++|+|||||||+|++|+++|++++. +|++++.. . ..++...... ...++..+.+|+.++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~---- 70 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY---KVVVIDNLDNSSEEALRRVKELAGD-----LGDNLVFHKVDLRDK---- 70 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCCcchHHHHHHHHHhhcc-----cCccceEEecCcCCH----
Confidence 3568999999999999999999998775 45555321 1 1122211110 124678899999987
Q ss_pred CHHHHHHHhc--CccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccc
Q 042694 182 EEDLADVIAK--EVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKP 256 (554)
Q Consensus 182 s~~~~~~l~~--~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~ 256 (554)
+.+..+++ ++|+|||+||.... ...+...++.|+.++.+++++|++ .++++|||+||+.+|+... +.+
T Consensus 71 --~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~~v~~Ss~~vyg~~~----~~~ 143 (352)
T PLN02240 71 --EALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAK-HGCKKLVFSSSATVYGQPE----EVP 143 (352)
T ss_pred --HHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEccHHHhCCCC----CCC
Confidence 77777665 69999999997543 235667899999999999999988 4789999999999987532 112
Q ss_pred cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh-hcCCCcEEEEccceeeecccCCcccc
Q 042694 257 FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL-ERGDIPVVIIRPSVIESTCKEPFSGW 335 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~-~~~glp~~I~Rp~~V~g~~~~p~~g~ 335 (554)
+++..+. .+.+ .|..+|..+|.++..+. ...+++++++|++.|||+.....-|.
T Consensus 144 ~~E~~~~-------------~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~ 198 (352)
T PLN02240 144 CTEEFPL-------------SATN------------PYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGE 198 (352)
T ss_pred CCCCCCC-------------CCCC------------HHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccC
Confidence 2222111 1111 34455667777766543 23579999999999999654221111
Q ss_pred ccCC--CCccceeeeeccceee--eee------cCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcc
Q 042694 336 MEGN--RMMDPIILYYGKGQLT--GFL------VDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPL 405 (554)
Q Consensus 336 ~~~~--~~~~~i~~~~~~G~~~--~~~------~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~i 405 (554)
-... ....+.+.....|..+ .+. +++....++|+|+|+|++++.++......+...+++||++++ +++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~--~~~ 276 (352)
T PLN02240 199 DPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTG--KGT 276 (352)
T ss_pred CCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCC--CcE
Confidence 0000 0000111111111111 111 256778999999999999988876431111223579999998 799
Q ss_pred cHHHHHHHHHhHhccC
Q 042694 406 VFQDLARLLHEHYSAS 421 (554)
Q Consensus 406 t~~e~~~~~~~~~~~~ 421 (554)
|++|+++.+.+.++..
T Consensus 277 s~~el~~~i~~~~g~~ 292 (352)
T PLN02240 277 SVLEMVAAFEKASGKK 292 (352)
T ss_pred eHHHHHHHHHHHhCCC
Confidence 9999999999999864
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=202.26 Aligned_cols=253 Identities=20% Similarity=0.242 Sum_probs=183.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+..++|+||||.||+|++.+..+...-|+. ++.+++.-. ...+.+. ....+-.++++|+.+.
T Consensus 4 ~~~~~vlItgg~gfi~Sn~~~~~~~~~p~~-~~v~idkL~~~s~~~~l~~~-------~n~p~ykfv~~di~~~------ 69 (331)
T KOG0747|consen 4 YKEKNVLITGGAGFIGSNFINYLVDKYPDY-KFVNLDKLDYCSNLKNLEPV-------RNSPNYKFVEGDIADA------ 69 (331)
T ss_pred CccceEEEecCcCcchhhhhhhcccCCCCC-cEEEEeecccccccchhhhh-------ccCCCceEeeccccch------
Confidence 344899999999999999999999987776 555554311 1112111 1345778999999887
Q ss_pred HHHHHHh--cCccEEEEcCCCCCchh---hHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccC
Q 042694 184 DLADVIA--KEVDVIVNSAANTTFDE---RYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFC 258 (554)
Q Consensus 184 ~~~~~l~--~~vdiViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~ 258 (554)
.....+. +++|.|+|.||..+.+. +.-++.+.|+.+|..|++.++..+++++||||||..|||+..+ ....
T Consensus 70 ~~~~~~~~~~~id~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~----~~~~ 145 (331)
T KOG0747|consen 70 DLVLYLFETEEIDTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDE----DAVV 145 (331)
T ss_pred HHHHhhhccCchhhhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccc----cccc
Confidence 4444444 48999999999877654 3446788999999999999999889999999999999998642 1111
Q ss_pred -CCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC---ccc
Q 042694 259 -MGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP---FSG 334 (554)
Q Consensus 259 -~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p---~~g 334 (554)
+...+ .| .+ .|+.+|..+|.+.....+..|+|++|+|.++||||.+.+ +|.
T Consensus 146 ~E~s~~------------nP-tn------------pyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipk 200 (331)
T KOG0747|consen 146 GEASLL------------NP-TN------------PYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPK 200 (331)
T ss_pred cccccC------------CC-CC------------chHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHH
Confidence 10000 01 01 455566777777777667789999999999999998755 343
Q ss_pred cccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHH
Q 042694 335 WMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLL 414 (554)
Q Consensus 335 ~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~ 414 (554)
++.- ...|.--..++++...+.+++|+|+++++-+++.+ +. .++|||+++. .+.+..|+++.+
T Consensus 201 Fi~l----------~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~K-g~----~geIYNIgtd--~e~~~~~l~k~i 263 (331)
T KOG0747|consen 201 FIKL----------AMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEK-GE----LGEIYNIGTD--DEMRVIDLAKDI 263 (331)
T ss_pred HHHH----------HHhCCCcceecCcccceeeEeHHHHHHHHHHHHhc-CC----ccceeeccCc--chhhHHHHHHHH
Confidence 3321 11122223457888889999999999998887765 32 2589999998 788999999999
Q ss_pred HhHhcc
Q 042694 415 HEHYSA 420 (554)
Q Consensus 415 ~~~~~~ 420 (554)
.+.+.+
T Consensus 264 ~eli~~ 269 (331)
T KOG0747|consen 264 CELFEK 269 (331)
T ss_pred HHHHHH
Confidence 988876
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=215.45 Aligned_cols=228 Identities=18% Similarity=0.196 Sum_probs=149.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|+++|++.+ + |+.++... ..+.||+.++ +.+..+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~---V~~~~~~~--------------------~~~~~Dl~d~------~~~~~~~ 50 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-N---LIALDVHS--------------------TDYCGDFSNP------EGVAETV 50 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-C---EEEecccc--------------------ccccCCCCCH------HHHHHHH
Confidence 479999999999999999999876 4 34444210 1256899887 7777776
Q ss_pred c--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 191 K--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 191 ~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
+ ++|+||||||..... ..++..+++|+.||.+++++|++. +. +|||+||.+||+... +.+++|.++.
T Consensus 51 ~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g~-~~v~~Ss~~Vy~~~~----~~p~~E~~~~-- 122 (299)
T PRK09987 51 RKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-GA-WVVHYSTDYVFPGTG----DIPWQETDAT-- 122 (299)
T ss_pred HhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEccceEECCCC----CCCcCCCCCC--
Confidence 6 589999999987543 356777899999999999999985 54 799999999998642 2344443321
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
.+.+ .|..+|..+|.++.. ...+.+|+||++|||+....+ +. .+
T Consensus 123 -----------~P~~------------~Yg~sK~~~E~~~~~----~~~~~~ilR~~~vyGp~~~~~---~~------~~ 166 (299)
T PRK09987 123 -----------APLN------------VYGETKLAGEKALQE----HCAKHLIFRTSWVYAGKGNNF---AK------TM 166 (299)
T ss_pred -----------CCCC------------HHHHHHHHHHHHHHH----hCCCEEEEecceecCCCCCCH---HH------HH
Confidence 1111 233445555555432 245789999999999754221 11 11
Q ss_pred eeeeccceeeeeecC--CCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhc
Q 042694 346 ILYYGKGQLTGFLVD--PNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYS 419 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~--~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~ 419 (554)
+.....|....+.++ .....+...+|+++.++..++.... ...+||++++ +++|+.|+++.+.+..+
T Consensus 167 ~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~-----~~giyni~~~--~~~s~~e~~~~i~~~~~ 235 (299)
T PRK09987 167 LRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPE-----VAGLYHLVAS--GTTTWHDYAALVFEEAR 235 (299)
T ss_pred HHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCC-----CCCeEEeeCC--CCccHHHHHHHHHHHHH
Confidence 111111211122233 2222344557777777776553211 1359999998 78999999999987654
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=217.65 Aligned_cols=268 Identities=15% Similarity=0.161 Sum_probs=167.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.+++|||||||||||++|+++|++.+.+ |+++.+.. ...+..... ...++.++.+|+.++ +.+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~------~~~ 73 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYT---VHATLRDPAKSLHLLSKWK------EGDRLRLFRADLQEE------GSF 73 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCChHHHHHHHHhhc------cCCeEEEEECCCCCH------HHH
Confidence 4679999999999999999999998764 44443221 111111111 124688999999988 788
Q ss_pred HHHhcCccEEEEcCCCCCch-----hhHHH-----HHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceee-cc
Q 042694 187 DVIAKEVDVIVNSAANTTFD-----ERYDI-----AIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVM-EK 255 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~~-----~~~~~-----~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~-E~ 255 (554)
..+.+++|+|||+||..... .+++. .++.|+.|+.+++++|++..++++||++||.++|+.....-. ..
T Consensus 74 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~ 153 (353)
T PLN02896 74 DEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRA 153 (353)
T ss_pred HHHHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCC
Confidence 88888999999999976432 23333 345567999999999987545889999999999975310000 00
Q ss_pred ccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC-ccc
Q 042694 256 PFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP-FSG 334 (554)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p-~~g 334 (554)
++++... .+.+. ..........|..+|..+|.++..+.+..+++++++||+.|||+...+ ++.
T Consensus 154 ~~~E~~~--------------~p~~~--~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~ 217 (353)
T PLN02896 154 VVDETCQ--------------TPIDH--VWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPS 217 (353)
T ss_pred ccCcccC--------------CcHHH--hhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCc
Confidence 1111100 00000 000000001466677888888777666679999999999999986543 233
Q ss_pred cccCCCCccceeeeeccceeeeeec---CCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHH
Q 042694 335 WMEGNRMMDPIILYYGKGQLTGFLV---DPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLA 411 (554)
Q Consensus 335 ~~~~~~~~~~i~~~~~~G~~~~~~~---~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~ 411 (554)
++... ..+ ..+.+......+ ......|+|+|||+|++++.++..... ..+|+++ + .++++.|++
T Consensus 218 ~~~~~--~~~---~~g~~~~~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~~~~-----~~~~~~~-~--~~~s~~el~ 284 (353)
T PLN02896 218 SIQVL--LSP---ITGDSKLFSILSAVNSRMGSIALVHIEDICDAHIFLMEQTKA-----EGRYICC-V--DSYDMSELI 284 (353)
T ss_pred hHHHH--HHH---hcCCccccccccccccccCceeEEeHHHHHHHHHHHHhCCCc-----CccEEec-C--CCCCHHHHH
Confidence 22210 000 001111000000 111236999999999999998764221 2468654 4 589999999
Q ss_pred HHHHhHhcc
Q 042694 412 RLLHEHYSA 420 (554)
Q Consensus 412 ~~~~~~~~~ 420 (554)
+.+.+.++.
T Consensus 285 ~~i~~~~~~ 293 (353)
T PLN02896 285 NHLSKEYPC 293 (353)
T ss_pred HHHHHhCCC
Confidence 999998863
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-24 Score=208.14 Aligned_cols=231 Identities=21% Similarity=0.326 Sum_probs=161.2
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcC
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKE 192 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~ 192 (554)
|||||||||||++|+++|+++++.| +.+.+.+....... ...++..+.+|+.+. +.++.+.+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v--~~~~~~~~~~~~~~---------~~~~~~~~~~dl~~~------~~~~~~~~~ 63 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEV--IVLSRSSNSESFEE---------KKLNVEFVIGDLTDK------EQLEKLLEK 63 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEE--EEEESCSTGGHHHH---------HHTTEEEEESETTSH------HHHHHHHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcc--cccccccccccccc---------ccceEEEEEeecccc------ccccccccc
Confidence 7999999999999999999998764 22222221111111 112788999999977 888888875
Q ss_pred --ccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccc
Q 042694 193 --VDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKEN 267 (554)
Q Consensus 193 --vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~ 267 (554)
+|+|||+||.... ........+.|+.++.+++++|++. ++++|+|+||..+|+... +.++.+..+.
T Consensus 64 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~sS~~~y~~~~----~~~~~e~~~~---- 134 (236)
T PF01370_consen 64 ANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREA-GVKRFIFLSSASVYGDPD----GEPIDEDSPI---- 134 (236)
T ss_dssp HTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEGGGGTSSS----SSSBETTSGC----
T ss_pred cCceEEEEeeccccccccccccccccccccccccccccccccc-cccccccccccccccccc----cccccccccc----
Confidence 5999999998642 2456788999999999999999995 679999999999999752 2222222211
Q ss_pred ccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceee
Q 042694 268 FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIIL 347 (554)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~ 347 (554)
.+.+ .|..+|..+|.+++...+..+++++++||+.|||+. .+ .+... .....++.
T Consensus 135 ---------~~~~------------~Y~~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~-~~-~~~~~--~~~~~~~~ 189 (236)
T PF01370_consen 135 ---------NPLS------------PYGASKRAAEELLRDYAKKYGLRVTILRPPNVYGPG-NP-NNNSS--SFLPSLIR 189 (236)
T ss_dssp ---------CHSS------------HHHHHHHHHHHHHHHHHHHHTSEEEEEEESEEESTT-SS-SSSTS--SHHHHHHH
T ss_pred ---------cccc------------cccccccccccccccccccccccccccccccccccc-cc-ccccc--cccchhhH
Confidence 1111 233445667777776665569999999999999987 11 00000 01122233
Q ss_pred eeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEee
Q 042694 348 YYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIA 398 (554)
Q Consensus 348 ~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~ 398 (554)
.+..|.-..++++++..+++++|+|+|++++.++..... .+++||++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~----~~~~yNig 236 (236)
T PF01370_consen 190 QALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKA----AGGIYNIG 236 (236)
T ss_dssp HHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCT----TTEEEEES
T ss_pred HhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCC----CCCEEEeC
Confidence 334455345568889999999999999999999987552 35899985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=215.19 Aligned_cols=254 Identities=20% Similarity=0.215 Sum_probs=196.2
Q ss_pred cccchhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH--HHHHHHcCCchhhhccCcEEEEEccCCCC
Q 042694 100 DGIGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF--KCLKQTYGKSYQAFMLSKLVPAVGNVCEN 177 (554)
Q Consensus 100 ~~~~i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~--~~l~~~~~~~~~~~~~~kv~~v~GDl~~~ 177 (554)
+...+..+++||+||||||||.+|+.|++++++.+| ++|++++...+ ..+..+....+ ...++.++-||+.+.
T Consensus 240 d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p--~~i~l~~~~E~~~~~i~~el~~~~---~~~~~~~~igdVrD~ 314 (588)
T COG1086 240 DTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP--KEIILFSRDEYKLYLIDMELREKF---PELKLRFYIGDVRDR 314 (588)
T ss_pred CHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC--CEEEEecCchHHHHHHHHHHHhhC---CCcceEEEecccccH
Confidence 345678889999999999999999999999999765 58888875432 22333322211 146899999999998
Q ss_pred CCCCCHHHHHHHhcC--ccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccccee
Q 042694 178 NLGLEEDLADVIAKE--VDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKV 252 (554)
Q Consensus 178 ~lGLs~~~~~~l~~~--vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i 252 (554)
+....+.++ +|+|||+||.-+. ..++.+++++||.||+|++++|.++ ++++||.+||.-+..+.
T Consensus 315 ------~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~Pt---- 383 (588)
T COG1086 315 ------DRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNPT---- 383 (588)
T ss_pred ------HHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCCc----
Confidence 888888886 9999999998553 5689999999999999999999995 99999999996442221
Q ss_pred eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhh-cC--CCcEEEEccceeeeccc
Q 042694 253 MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLE-RG--DIPVVIIRPSVIESTCK 329 (554)
Q Consensus 253 ~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~-~~--glp~~I~Rp~~V~g~~~ 329 (554)
+ .++.+|.++|.+...+.+ .. +-.++++|.|+|.|+..
T Consensus 384 ---------------------------N------------vmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG 424 (588)
T COG1086 384 ---------------------------N------------VMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG 424 (588)
T ss_pred ---------------------------h------------HhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC
Confidence 1 344556777777665543 22 48899999999999887
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHH
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQD 409 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e 409 (554)
+-+|-+.....-.+| + -..+|+..+-|+-+++.++.++.+..... .+.+|-+-.+ .|+++.|
T Consensus 425 SViPlFk~QI~~Ggp---------l--TvTdp~mtRyfMTI~EAv~LVlqA~a~~~-----gGeifvldMG--epvkI~d 486 (588)
T COG1086 425 SVIPLFKKQIAEGGP---------L--TVTDPDMTRFFMTIPEAVQLVLQAGAIAK-----GGEIFVLDMG--EPVKIID 486 (588)
T ss_pred CCHHHHHHHHHcCCC---------c--cccCCCceeEEEEHHHHHHHHHHHHhhcC-----CCcEEEEcCC--CCeEHHH
Confidence 766766544322222 2 12678889999999999999999876522 3689999887 7999999
Q ss_pred HHHHHHhHhccCCCCCC
Q 042694 410 LARLLHEHYSASPCVDT 426 (554)
Q Consensus 410 ~~~~~~~~~~~~p~~~~ 426 (554)
+++.+.+..|..|....
T Consensus 487 LAk~mi~l~g~~~~~dI 503 (588)
T COG1086 487 LAKAMIELAGQTPPGDI 503 (588)
T ss_pred HHHHHHHHhCCCCCCCC
Confidence 99999999998877653
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=218.11 Aligned_cols=264 Identities=16% Similarity=0.155 Sum_probs=168.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|+|||||||||||++|+++|++.|++| .+ +.++. ..+.++.............++.++.+|++++ +.+
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V-~~-~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~------~~l 122 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSV-RI-AVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEP------ESL 122 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEE-EE-EeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCH------HHH
Confidence 568999999999999999999999988754 22 23322 1222211100000000013578899999998 888
Q ss_pred HHHhcCccEEEEcCCCCCchh---hHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeece--ecccc--c---ceeeccc
Q 042694 187 DVIAKEVDVIVNSAANTTFDE---RYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAY--VNGQR--R---GKVMEKP 256 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~--v~~~~--~---~~i~E~~ 256 (554)
..+++++|.|||+|+.++... ......++|+.||.+++++|++..++++|||+||.. +|+.. . ..++|..
T Consensus 123 ~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~ 202 (367)
T PLN02686 123 HEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEES 202 (367)
T ss_pred HHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCC
Confidence 888889999999999764432 124567889999999999999755799999999964 55531 0 0122211
Q ss_pred cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc-ccc
Q 042694 257 FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF-SGW 335 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~-~g~ 335 (554)
.. ++... ..+. . .|..+|..+|.++..+....|++++++||+.|||+...+. +..
T Consensus 203 ~~------~~~~~------~~p~------~------~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~~ 258 (367)
T PLN02686 203 WS------DESFC------RDNK------L------WYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTA 258 (367)
T ss_pred CC------Chhhc------cccc------c------hHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCChh
Confidence 10 00000 0000 0 3455566777776655555689999999999999864211 111
Q ss_pred ccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHH
Q 042694 336 MEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLH 415 (554)
Q Consensus 336 ~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~ 415 (554)
+ + ....|..+ +.+ +...++++|||+|++++.++..... ...+.+| ++++ .++++.|+++.+.
T Consensus 259 ~---------~-~~~~g~~~-~~g--~g~~~~v~V~Dva~A~~~al~~~~~--~~~~~~y-i~~g--~~~s~~e~~~~i~ 320 (367)
T PLN02686 259 T---------I-AYLKGAQE-MLA--DGLLATADVERLAEAHVCVYEAMGN--KTAFGRY-ICFD--HVVSREDEAEELA 320 (367)
T ss_pred H---------H-HHhcCCCc-cCC--CCCcCeEEHHHHHHHHHHHHhccCC--CCCCCcE-EEeC--CCccHHHHHHHHH
Confidence 1 0 11122222 222 3345799999999999998864211 1124578 7776 6899999999999
Q ss_pred hHhccC
Q 042694 416 EHYSAS 421 (554)
Q Consensus 416 ~~~~~~ 421 (554)
+.+|.+
T Consensus 321 ~~~g~~ 326 (367)
T PLN02686 321 RQIGLP 326 (367)
T ss_pred HHcCCC
Confidence 999853
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-24 Score=217.50 Aligned_cols=259 Identities=15% Similarity=0.070 Sum_probs=174.4
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
++++|||||||||||++|+++|++.|.+ |++++... .+.+...... ......++.++.+|+.+. +
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~d~------~ 73 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGYE---VHGIIRRSSNFNTQRLDHIYID--PHPNKARMKLHYGDLSDA------S 73 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCE---EEEEecccccccccchhhhccc--cccccCceEEEEecCCCH------H
Confidence 5789999999999999999999998764 44443211 1111111000 000124688999999988 7
Q ss_pred HHHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCc-----eEEEEeeceecccccceeec
Q 042694 185 LADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLK-----LFVQVSTAYVNGQRRGKVME 254 (554)
Q Consensus 185 ~~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k-----~~v~vST~~v~~~~~~~i~E 254 (554)
.+..+++ ++|+|||+||..+.. .......++|+.||.+++++|++. +++ +|||+||..+|+....
T Consensus 74 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~~~~~~v~~Ss~~vyg~~~~---- 148 (340)
T PLN02653 74 SLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLH-GQETGRQIKYYQAGSSEMYGSTPP---- 148 (340)
T ss_pred HHHHHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHh-ccccccceeEEEeccHHHhCCCCC----
Confidence 7777666 579999999976532 345667789999999999999885 443 8999999999987432
Q ss_pred cccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccc
Q 042694 255 KPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSG 334 (554)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g 334 (554)
++.++.+. .+.. .|..+|..+|.+++.+....+++++..|+..+||+...+ .
T Consensus 149 -~~~E~~~~-------------~p~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~--~ 200 (340)
T PLN02653 149 -PQSETTPF-------------HPRS------------PYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGE--N 200 (340)
T ss_pred -CCCCCCCC-------------CCCC------------hhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCc--c
Confidence 22222111 1111 456667777777776666668888889998888864321 1
Q ss_pred cccCCCCccceeeeeccce-eeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHH
Q 042694 335 WMEGNRMMDPIILYYGKGQ-LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARL 413 (554)
Q Consensus 335 ~~~~~~~~~~i~~~~~~G~-~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~ 413 (554)
++.. .....+..+..|. .+.+.++++...|+++|+|+|++++.++.... ..+||++++ +++++.|+++.
T Consensus 201 ~~~~--~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~------~~~yni~~g--~~~s~~e~~~~ 270 (340)
T PLN02653 201 FVTR--KITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYVEAMWLMLQQEK------PDDYVVATE--ESHTVEEFLEE 270 (340)
T ss_pred cchh--HHHHHHHHHHcCCCCceEeCCCcceecceeHHHHHHHHHHHHhcCC------CCcEEecCC--CceeHHHHHHH
Confidence 1100 0000000111222 22344778888999999999999998876421 358999998 79999999999
Q ss_pred HHhHhccC
Q 042694 414 LHEHYSAS 421 (554)
Q Consensus 414 ~~~~~~~~ 421 (554)
+.+..+..
T Consensus 271 i~~~~g~~ 278 (340)
T PLN02653 271 AFGYVGLN 278 (340)
T ss_pred HHHHcCCC
Confidence 99998863
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-24 Score=214.38 Aligned_cols=240 Identities=10% Similarity=0.074 Sum_probs=161.9
Q ss_pred EEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc--
Q 042694 114 FVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK-- 191 (554)
Q Consensus 114 lITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~-- 191 (554)
||||||||||++|++.|++.+++| +++.. ...+|+.+. ++++.+++
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v---~~~~~-----------------------~~~~Dl~~~------~~l~~~~~~~ 48 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTN---LVLRT-----------------------HKELDLTRQ------ADVEAFFAKE 48 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcE---EEeec-----------------------cccCCCCCH------HHHHHHHhcc
Confidence 699999999999999999987654 22211 024798877 77777765
Q ss_pred CccEEEEcCCCCCc----hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccc-ceeeccccCCCCCcccc
Q 042694 192 EVDVIVNSAANTTF----DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRR-GKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 192 ~vdiViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~-~~i~E~~~~~~~~~~~~ 266 (554)
++|+||||||..+. .......++.|+.||.+++++|++. ++++|||+||.+||+... ..++|...... +
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~-~---- 122 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRH-GVKKLLFLGSSCIYPKFAPQPIPETALLTG-P---- 122 (306)
T ss_pred CCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHc-CCCeEEEeCceeecCCCCCCCCCHHHhccC-C----
Confidence 68999999997542 2345678999999999999999984 789999999999998532 11222111000 0
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
..+.. ..|..+|..+|.+++.+.+..+++++++||+.|||+.... .+- +......++
T Consensus 123 ---------~~p~~-----------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~-~~~--~~~~~~~~i 179 (306)
T PLN02725 123 ---------PEPTN-----------EWYAIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNF-HPE--NSHVIPALI 179 (306)
T ss_pred ---------CCCCc-----------chHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCC-CCC--CCcccHHHH
Confidence 00000 0244456666766666655668999999999999986421 110 000111111
Q ss_pred e----eeccce-eeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 347 L----YYGKGQ-LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 347 ~----~~~~G~-~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
. ....|. ....+++++...++++|+|++++++.++.... ..+.||++++ .++++.|+++.+.+.++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~~-----~~~~~ni~~~--~~~s~~e~~~~i~~~~~~~ 252 (306)
T PLN02725 180 RRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYS-----GAEHVNVGSG--DEVTIKELAELVKEVVGFE 252 (306)
T ss_pred HHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhccc-----cCcceEeCCC--CcccHHHHHHHHHHHhCCC
Confidence 1 011122 22224667778899999999999988876422 1357899988 7999999999999998753
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=211.36 Aligned_cols=249 Identities=16% Similarity=0.201 Sum_probs=163.1
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK 191 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~ 191 (554)
|||||||||||++|+++|++.++. .|+++++... ..+. . . ....+.+|+.++ +..+.+.+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~--~v~~~~~~~~~~~~~--------~--~-~~~~~~~d~~~~------~~~~~~~~ 61 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT--DILVVDNLRDGHKFL--------N--L-ADLVIADYIDKE------DFLDRLEK 61 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc--eEEEEecCCCchhhh--------h--h-hheeeeccCcch------hHHHHHHh
Confidence 699999999999999999998752 3555543210 1110 0 0 113466787766 66666653
Q ss_pred ----CccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccc
Q 042694 192 ----EVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 192 ----~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~ 266 (554)
++|+|||+||.... ..+.....++|+.|+.+++++|.+. +. +|||+||.++|+...+.+.| .++.
T Consensus 62 ~~~~~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy~~~~~~~~e-----~~~~--- 131 (314)
T TIGR02197 62 GAFGKIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEK-GI-PFIYASSAATYGDGEAGFRE-----GREL--- 131 (314)
T ss_pred hccCCCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHh-CC-cEEEEccHHhcCCCCCCccc-----ccCc---
Confidence 89999999997543 2356678899999999999999984 55 79999999999864321111 1110
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh--hcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL--ERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~--~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
..+.. .|..+|..+|.++.... +..+++++++||+.|||+...+-.+. .+ ....
T Consensus 132 ---------~~p~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~-~~--~~~~ 187 (314)
T TIGR02197 132 ---------ERPLN------------VYGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKM-AS--VAFH 187 (314)
T ss_pred ---------CCCCC------------HHHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCc-cc--HHHH
Confidence 00111 34445666776665422 23468999999999999865321111 00 0001
Q ss_pred eeeeeccce-eeee-----ecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHh
Q 042694 345 IILYYGKGQ-LTGF-----LVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHY 418 (554)
Q Consensus 345 i~~~~~~G~-~~~~-----~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~ 418 (554)
++.....|. +..+ .++++...+++||||++++++.++.. . ..++||++++ .++++.|+++.+.+.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~-~-----~~~~yni~~~--~~~s~~e~~~~i~~~~ 259 (314)
T TIGR02197 188 LFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLWLLEN-G-----VSGIFNLGTG--RARSFNDLADAVFKAL 259 (314)
T ss_pred HHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHHHHHhc-c-----cCceEEcCCC--CCccHHHHHHHHHHHh
Confidence 111111121 1111 13566778999999999999988765 2 1369999998 7999999999999999
Q ss_pred ccCC
Q 042694 419 SASP 422 (554)
Q Consensus 419 ~~~p 422 (554)
|.++
T Consensus 260 g~~~ 263 (314)
T TIGR02197 260 GKDE 263 (314)
T ss_pred CCCC
Confidence 8654
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-23 Score=205.89 Aligned_cols=261 Identities=13% Similarity=0.054 Sum_probs=165.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+++|+|||||||+|++++++|+++|++| +.+ ++.......+..... . ....++..+.+|++++ +.+..
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V---~~~~R~~~~~~~~~~~~~l-~-~~~~~~~~~~~Dl~d~------~~~~~ 74 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTV---HAAVQKNGETEIEKEIRGL-S-CEEERLKVFDVDPLDY------HSILD 74 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEE---EEEEcCchhhhHHHHHHhc-c-cCCCceEEEEecCCCH------HHHHH
Confidence 5789999999999999999999988765 332 221111111100000 0 0124688899999988 77788
Q ss_pred HhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccc-cceeeccccCCCCCcccc
Q 042694 189 IAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQR-RGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~-~~~i~E~~~~~~~~~~~~ 266 (554)
.+.++|.|+|+++.... ....+..+++|+.||.+++++|.+..+++++|++||..++... .....+.++++..+
T Consensus 75 ~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~---- 150 (297)
T PLN02583 75 ALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSW---- 150 (297)
T ss_pred HHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccC----
Confidence 88899999998765432 2235688999999999999999875468899999998664321 00001111221110
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
.+... .. .....|..+|..+|+++..+.+..|++++++||+.|+|+...+.... +
T Consensus 151 ------------~~~~~--~~-~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~~~----------~ 205 (297)
T PLN02583 151 ------------SDQNF--CR-KFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHNPY----------L 205 (297)
T ss_pred ------------CCHHH--Hh-hcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCchhh----------h
Confidence 00000 00 00003555567777776555445689999999999999765321100 0
Q ss_pred eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCCCC
Q 042694 347 LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCV 424 (554)
Q Consensus 347 ~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p~~ 424 (554)
.+....+ ++....+|+|||||++++.++..... ...|+++++ +...+.++.+++.+.+...|..
T Consensus 206 ----~~~~~~~---~~~~~~~v~V~Dva~a~~~al~~~~~-----~~r~~~~~~--~~~~~~~~~~~~~~~~p~~~~~ 269 (297)
T PLN02583 206 ----KGAAQMY---ENGVLVTVDVNFLVDAHIRAFEDVSS-----YGRYLCFNH--IVNTEEDAVKLAQMLSPLIPSP 269 (297)
T ss_pred ----cCCcccC---cccCcceEEHHHHHHHHHHHhcCccc-----CCcEEEecC--CCccHHHHHHHHHHhCCCCCCC
Confidence 0111111 22346799999999999999875332 246999887 4445788999999988776553
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-23 Score=210.56 Aligned_cols=264 Identities=16% Similarity=0.193 Sum_probs=170.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
|+|+|||||||||++|+++|++.+.+| +++++ .....+.. .. .....++..+.+|+.++ +.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V---~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~Dl~d~------~~~~ 66 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV---VILDNLCNSKRSVLPV-IE----RLGGKHPTFVEGDIRNE------ALLT 66 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeE---EEEecCCCchHhHHHH-HH----HhcCCCceEEEccCCCH------HHHH
Confidence 479999999999999999999987654 33321 11111111 00 00123567789999987 7777
Q ss_pred HHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCC
Q 042694 188 VIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 188 ~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
.+++ ++|+|||+|+..... ....+.+++|+.++.+++++|++. ++++||++||+++|+... +.++++..+
T Consensus 67 ~~~~~~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~yg~~~----~~~~~E~~~ 141 (338)
T PRK10675 67 EILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNLIFSSSATVYGDQP----KIPYVESFP 141 (338)
T ss_pred HHHhcCCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHhhCCCC----CCccccccC
Confidence 6665 699999999876532 345678899999999999999984 789999999999987532 112222211
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc-CCCcEEEEccceeeecccCCccccccCC--
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER-GDIPVVIIRPSVIESTCKEPFSGWMEGN-- 339 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~-~glp~~I~Rp~~V~g~~~~p~~g~~~~~-- 339 (554)
.. .+.. .|..+|..+|.+++.+.+. .+++++|+|++.+||+....+-|--+..
T Consensus 142 ~~------------~p~~------------~Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~ 197 (338)
T PRK10675 142 TG------------TPQS------------PYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIP 197 (338)
T ss_pred CC------------CCCC------------hhHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCCh
Confidence 00 0011 3555667777777665433 4799999999999996432111100000
Q ss_pred CCccceeeeeccc---eeeee----e-cCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHH
Q 042694 340 RMMDPIILYYGKG---QLTGF----L-VDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLA 411 (554)
Q Consensus 340 ~~~~~i~~~~~~G---~~~~~----~-~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~ 411 (554)
....+.+..+..+ .+..+ + .++...+++++|+|+|++++.++..... ...+++||++++ +++++.|++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~~~~~~~~~~~~--~~~~~~~ni~~~--~~~s~~e~~ 273 (338)
T PRK10675 198 NNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLAN--KPGVHIYNLGAG--VGSSVLDVV 273 (338)
T ss_pred hHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEHHHHHHHHHHHHHhhhc--cCCCceEEecCC--CceeHHHHH
Confidence 0000111111111 11111 1 2456778999999999999988764211 122479999988 799999999
Q ss_pred HHHHhHhccC
Q 042694 412 RLLHEHYSAS 421 (554)
Q Consensus 412 ~~~~~~~~~~ 421 (554)
+.+.+.+++.
T Consensus 274 ~~i~~~~g~~ 283 (338)
T PRK10675 274 NAFSKACGKP 283 (338)
T ss_pred HHHHHHhCCC
Confidence 9999999864
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-23 Score=206.18 Aligned_cols=226 Identities=19% Similarity=0.253 Sum_probs=155.5
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK 191 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~ 191 (554)
+|||||||||+|++++++|++.+++| +++.+. .+|+.++ +.+..+++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v---~~~~r~------------------------~~d~~~~------~~~~~~~~ 47 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVV---VALTSS------------------------QLDLTDP------EALERLLR 47 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEE---EEeCCc------------------------ccCCCCH------HHHHHHHH
Confidence 48999999999999999999988654 443321 4688776 77777776
Q ss_pred C--ccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccc
Q 042694 192 E--VDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 192 ~--vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~ 266 (554)
+ +|+|||+|+..... ......+++|+.|+.+++++|++. +. +|||+||.++|+... +.++++.++.
T Consensus 48 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~Ss~~vy~~~~----~~~~~E~~~~--- 118 (287)
T TIGR01214 48 AIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-GA-RLVHISTDYVFDGEG----KRPYREDDAT--- 118 (287)
T ss_pred hCCCCEEEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeeeeecCCC----CCCCCCCCCC---
Confidence 5 59999999976543 245678899999999999999885 43 899999999997632 2233332211
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
.+. . .|..+|..+|.++. ..+++++|+||++|||+.... .++ ..++
T Consensus 119 ----------~~~------~------~Y~~~K~~~E~~~~----~~~~~~~ilR~~~v~G~~~~~--~~~------~~~~ 164 (287)
T TIGR01214 119 ----------NPL------N------VYGQSKLAGEQAIR----AAGPNALIVRTSWLYGGGGGR--NFV------RTML 164 (287)
T ss_pred ----------CCc------c------hhhHHHHHHHHHHH----HhCCCeEEEEeeecccCCCCC--CHH------HHHH
Confidence 000 0 23333444444443 347899999999999976410 111 1111
Q ss_pred eeecc-ceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 347 LYYGK-GQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 347 ~~~~~-G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
..+.. +.+.. .++...+++++||+|+++..++..... .+++||++++ +++++.|+++.+.+.++..+
T Consensus 165 ~~~~~~~~~~~---~~~~~~~~v~v~Dva~a~~~~~~~~~~----~~~~~ni~~~--~~~s~~e~~~~i~~~~~~~~ 232 (287)
T TIGR01214 165 RLAGRGEELRV---VDDQIGSPTYAKDLARVIAALLQRLAR----ARGVYHLANS--GQCSWYEFAQAIFEEAGADG 232 (287)
T ss_pred HHhhcCCCceE---ecCCCcCCcCHHHHHHHHHHHHhhccC----CCCeEEEECC--CCcCHHHHHHHHHHHhCccc
Confidence 11111 22221 123567899999999999998865321 2479999998 79999999999999998753
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-24 Score=207.19 Aligned_cols=241 Identities=19% Similarity=0.250 Sum_probs=163.7
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhh-hccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQA-FMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~-~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
||||||+|++|+.|+++|++.+| ++|++++... .-.++.+.....+. .....+.++.||+.+. +.+..+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p--~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~------~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP--KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDK------ERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB---SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHH------HHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC--CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCH------HHHHHH
Confidence 79999999999999999998766 5899887542 22333332110010 1122456789999998 888999
Q ss_pred hc--CccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 190 AK--EVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 190 ~~--~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
++ ++|+|||+||.-+. ..++.++.++||.||++++++|.++ ++++||++||.-+..+.
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~Pt---------------- 135 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVNPT---------------- 135 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS------------------
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCCCC----------------
Confidence 88 99999999998664 4578899999999999999999995 89999999997543221
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc---CCCcEEEEccceeeecccCCccccccCCCC
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER---GDIPVVIIRPSVIESTCKEPFSGWMEGNRM 341 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~---~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~ 341 (554)
+ .++.+|.++|.+...+... .+..++++|.|+|.|+..+-+|.|......
T Consensus 136 ---------------n------------vmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSVip~F~~Qi~~ 188 (293)
T PF02719_consen 136 ---------------N------------VMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGSVIPLFKKQIKN 188 (293)
T ss_dssp ---------------S------------HHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTSCHHHHHHHHHT
T ss_pred ---------------c------------HHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCcHHHHHHHHHHc
Confidence 1 2233456777776655433 368999999999999888888888766443
Q ss_pred ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 342 MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 342 ~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
.+|+. ..+++..+-++-++++++.++.++.... .+.+|-.-.+ +|+++.|+++.+.+..|..
T Consensus 189 g~PlT-----------vT~p~mtRffmti~EAv~Lvl~a~~~~~-----~geifvl~mg--~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 189 GGPLT-----------VTDPDMTRFFMTIEEAVQLVLQAAALAK-----GGEIFVLDMG--EPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp TSSEE-----------ECETT-EEEEE-HHHHHHHHHHHHHH-------TTEEEEE-----TCEECCCHHHHHHHHTT-E
T ss_pred CCcce-----------eCCCCcEEEEecHHHHHHHHHHHHhhCC-----CCcEEEecCC--CCcCHHHHHHHHHhhcccc
Confidence 34432 1567888889999999999999876532 2579998887 7999999999999999865
Q ss_pred CC
Q 042694 422 PC 423 (554)
Q Consensus 422 p~ 423 (554)
|.
T Consensus 251 ~~ 252 (293)
T PF02719_consen 251 PG 252 (293)
T ss_dssp EE
T ss_pred cc
Confidence 53
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=206.72 Aligned_cols=224 Identities=15% Similarity=0.143 Sum_probs=154.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||+|++|+++|++.+++ |.++.+.. .+... . ...+++++.||+.++ +.+...+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~---V~~l~R~~-~~~~~-l-------~~~~v~~v~~Dl~d~------~~l~~al 62 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQ---VRCLVRNL-RKASF-L-------KEWGAELVYGDLSLP------ETLPPSF 62 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCe---EEEEEcCh-HHhhh-H-------hhcCCEEEECCCCCH------HHHHHHH
Confidence 47999999999999999999998874 44443321 11110 0 113678999999988 8888888
Q ss_pred cCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccccc
Q 042694 191 KEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVS 270 (554)
Q Consensus 191 ~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~ 270 (554)
+++|+|||+++.. ........++|+.|+.+++++|++. ++++|||+||..+.....
T Consensus 63 ~g~d~Vi~~~~~~--~~~~~~~~~~~~~~~~~l~~aa~~~-gvkr~I~~Ss~~~~~~~~--------------------- 118 (317)
T CHL00194 63 KGVTAIIDASTSR--PSDLYNAKQIDWDGKLALIEAAKAA-KIKRFIFFSILNAEQYPY--------------------- 118 (317)
T ss_pred CCCCEEEECCCCC--CCCccchhhhhHHHHHHHHHHHHHc-CCCEEEEeccccccccCC---------------------
Confidence 9999999987642 2234457889999999999999994 899999999964321100
Q ss_pred cccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeec
Q 042694 271 NSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYG 350 (554)
Q Consensus 271 ~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~ 350 (554)
. .+..+|..+ |......+++++|+||+.+++..- ..+. .+++ .
T Consensus 119 ------~---------------~~~~~K~~~----e~~l~~~~l~~tilRp~~~~~~~~---~~~~------~~~~---~ 161 (317)
T CHL00194 119 ------I---------------PLMKLKSDI----EQKLKKSGIPYTIFRLAGFFQGLI---SQYA------IPIL---E 161 (317)
T ss_pred ------C---------------hHHHHHHHH----HHHHHHcCCCeEEEeecHHhhhhh---hhhh------hhhc---c
Confidence 0 011112233 333345689999999998875311 1110 0111 0
Q ss_pred cceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 351 KGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 351 ~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
+. +.+..+++...++|+++|+|+++..++..+.. .+++||++++ +++|++|+++.+.+..|+.
T Consensus 162 -~~-~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~----~~~~~ni~g~--~~~s~~el~~~~~~~~g~~ 224 (317)
T CHL00194 162 -KQ-PIWITNESTPISYIDTQDAAKFCLKSLSLPET----KNKTFPLVGP--KSWNSSEIISLCEQLSGQK 224 (317)
T ss_pred -CC-ceEecCCCCccCccCHHHHHHHHHHHhcCccc----cCcEEEecCC--CccCHHHHHHHHHHHhCCC
Confidence 11 12223455668999999999999888754322 3589999998 7899999999999999875
|
|
| >PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-24 Score=176.30 Aligned_cols=94 Identities=34% Similarity=0.474 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcccccccccCcchHHHHHHHHHHHHHHHHHHHhccccccceEEEechhHHHHHHhcChhhccccccCC
Q 042694 446 SAHLWRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDV 525 (554)
Q Consensus 446 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~l~~~D~~~F~~d~ 525 (554)
+.|.+|+++++..+... .++|.+.++++|+.+ ++++++||++++|+|+|+|+++|++.|+++||++|+||+
T Consensus 1 ~~h~lPA~~~D~~~~l~--g~kp~~~k~~~ki~~-------~~~~~~~F~~~eW~F~~~n~~~L~~~l~~~D~~~F~fD~ 71 (94)
T PF03015_consen 1 LFHFLPAYLLDLILRLF--GQKPRMVKIYRKIRK-------ALEVLEYFTTNEWIFDNDNTRRLWERLSPEDREIFNFDI 71 (94)
T ss_pred CcchHHHHHHHHHHHHh--CCChHHHHHHHHHHH-------HHHHHHHHHhCceeecchHHHHHHHhCchhcCceecCCC
Confidence 35889999988644321 244556678877654 568999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhhchhHHHHHhhcC
Q 042694 526 GSIDWKEYITNVHIPGLRRHVMKG 549 (554)
Q Consensus 526 ~~idW~~Y~~~~~~~G~r~y~lke 549 (554)
++|||++|+.+ |++|+|||++||
T Consensus 72 ~~idW~~Y~~~-~~~G~rkyllke 94 (94)
T PF03015_consen 72 RSIDWEEYFRN-YIPGIRKYLLKE 94 (94)
T ss_pred CCCCHHHHHHH-HHHHHHHHHhCC
Confidence 99999999999 899999999998
|
The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=206.59 Aligned_cols=250 Identities=16% Similarity=0.167 Sum_probs=169.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
++|+|||||||||++|++.|++.++ +|+++++... ... .....++..+.+|+.++ ++++.+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~---~V~~~~r~~~-~~~--------~~~~~~~~~~~~D~~~~------~~l~~~~ 62 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE---EVRVLVRPTS-DRR--------NLEGLDVEIVEGDLRDP------ASLRKAV 62 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC---EEEEEEecCc-ccc--------ccccCCceEEEeeCCCH------HHHHHHH
Confidence 4799999999999999999999876 4555543210 000 00123678899999988 7888888
Q ss_pred cCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccccc
Q 042694 191 KEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFV 269 (554)
Q Consensus 191 ~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~ 269 (554)
+++|+|||+|+.... .+.+...++.|+.|+.+++++|.+ .++++||++||.++++... .+.++++..+..+.
T Consensus 63 ~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~~v~~SS~~~~~~~~---~~~~~~e~~~~~~~--- 135 (328)
T TIGR03466 63 AGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALE-AGVERVVYTSSVATLGVRG---DGTPADETTPSSLD--- 135 (328)
T ss_pred hCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEechhhcCcCC---CCCCcCccCCCCcc---
Confidence 999999999986543 345778899999999999999998 4789999999999988521 11122222111000
Q ss_pred ccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeee
Q 042694 270 SNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYY 349 (554)
Q Consensus 270 ~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~ 349 (554)
.... .|..+|..+|++++.+....+++++++||+.+||+....... ...++...
T Consensus 136 -------~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~-------~~~~~~~~ 189 (328)
T TIGR03466 136 -------DMIG------------HYKRSKFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTP-------TGRIIVDF 189 (328)
T ss_pred -------cccC------------hHHHHHHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCc-------HHHHHHHH
Confidence 0000 344556677777776665568999999999999976421100 01111111
Q ss_pred ccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 350 GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 350 ~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
..+..+.. .+...++++++|+|++++.++.... .+..|+++ + .++++.|+++.+.+.+|+..
T Consensus 190 ~~~~~~~~---~~~~~~~i~v~D~a~a~~~~~~~~~-----~~~~~~~~-~--~~~s~~e~~~~i~~~~g~~~ 251 (328)
T TIGR03466 190 LNGKMPAY---VDTGLNLVHVDDVAEGHLLALERGR-----IGERYILG-G--ENLTLKQILDKLAEITGRPA 251 (328)
T ss_pred HcCCCcee---eCCCcceEEHHHHHHHHHHHHhCCC-----CCceEEec-C--CCcCHHHHHHHHHHHhCCCC
Confidence 11122222 2234689999999999988875522 24688885 4 58999999999999998753
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=188.98 Aligned_cols=263 Identities=16% Similarity=0.163 Sum_probs=190.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc------hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+++||||||.||+|+|.+-+|++.+++| .++|+ +...|+++..++ .++|.++.+|+++.
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v---~~vDNl~n~~~~sl~r~~~l~~~------~~~v~f~~~Dl~D~------ 66 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGV---VIVDNLNNSYLESLKRVRQLLGE------GKSVFFVEGDLNDA------ 66 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcE---EEEecccccchhHHHHHHHhcCC------CCceEEEEeccCCH------
Confidence 5789999999999999999999999864 44442 334555554432 47999999999998
Q ss_pred HHHHHHhc--CccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccC
Q 042694 184 DLADVIAK--EVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFC 258 (554)
Q Consensus 184 ~~~~~l~~--~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~ 258 (554)
+.++++++ +.|.|+|.||.-.- .+.+...+..|+.||.++|+.+++. +++.+|+.||+.|||... +-|++
T Consensus 67 ~~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~-~~~~~V~sssatvYG~p~----~ip~t 141 (343)
T KOG1371|consen 67 EALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAH-NVKALVFSSSATVYGLPT----KVPIT 141 (343)
T ss_pred HHHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHc-CCceEEEecceeeecCcc----eeecc
Confidence 89999987 79999999997554 2345678999999999999999996 699999999999999853 34555
Q ss_pred CCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec--cc---CCcc
Q 042694 259 MGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST--CK---EPFS 333 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~--~~---~p~~ 333 (554)
+..+.. .+.+ .|+.+|...|.++.......++.++++|...++|. +. ++..
T Consensus 142 e~~~t~------------~p~~------------pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~ 197 (343)
T KOG1371|consen 142 EEDPTD------------QPTN------------PYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPL 197 (343)
T ss_pred CcCCCC------------CCCC------------cchhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCc
Confidence 443321 0111 56666777777777666666799999999999983 22 2223
Q ss_pred ccccCCCCccceeeeeccceee--------eeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcc
Q 042694 334 GWMEGNRMMDPIILYYGKGQLT--------GFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPL 405 (554)
Q Consensus 334 g~~~~~~~~~~i~~~~~~G~~~--------~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~i 405 (554)
+..+++.. -+.....|..+ .-..|++...|.++|-|.|..++.++...... .+.++||++++ .+.
T Consensus 198 ~~~nnl~p---~v~~vaigr~~~l~v~g~d~~t~dgt~vrdyi~v~Dla~~h~~al~k~~~~--~~~~i~Nlgtg--~g~ 270 (343)
T KOG1371|consen 198 GIPNNLLP---YVFQVAIGRRPNLQVVGRDYTTIDGTIVRDYIHVLDLADGHVAALGKLRGA--AEFGVYNLGTG--KGS 270 (343)
T ss_pred cCcccccc---cccchhhcccccceeecCcccccCCCeeecceeeEehHHHHHHHhhccccc--hheeeEeecCC--CCc
Confidence 33333221 11111111111 11235688899999999999999988765431 23569999999 788
Q ss_pred cHHHHHHHHHhHhccCCC
Q 042694 406 VFQDLARLLHEHYSASPC 423 (554)
Q Consensus 406 t~~e~~~~~~~~~~~~p~ 423 (554)
+..++...+.+..|..-+
T Consensus 271 ~V~~lv~a~~k~~g~~~k 288 (343)
T KOG1371|consen 271 SVLELVTAFEKALGVKIK 288 (343)
T ss_pred cHHHHHHHHHHHhcCCCC
Confidence 999999999999987644
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=193.27 Aligned_cols=255 Identities=18% Similarity=0.178 Sum_probs=176.0
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.+++|+||||.||+|+||+++|+..++ .|+.+|.. +...+++... + ......+.+.-|+..+
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh---~VIa~Dn~-ftg~k~n~~~-~--~~~~~fel~~hdv~~p----------- 87 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGH---EVIALDNY-FTGRKENLEH-W--IGHPNFELIRHDVVEP----------- 87 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCC---eEEEEecc-cccchhhcch-h--ccCcceeEEEeechhH-----------
Confidence 358999999999999999999998885 56666643 1111222111 1 1223455555565554
Q ss_pred HhcCccEEEEcCCCC---CchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 189 IAKEVDVIVNSAANT---TFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 189 l~~~vdiViH~AA~v---~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
+..+||-|||+||.. ++..++-..+..|+.||.+++.+|++. + ++|+|.||+.|||+.. +.+.++...
T Consensus 88 l~~evD~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv-~-aR~l~aSTseVYgdp~----~hpq~e~yw--- 158 (350)
T KOG1429|consen 88 LLKEVDQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRV-G-ARFLLASTSEVYGDPL----VHPQVETYW--- 158 (350)
T ss_pred HHHHhhhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHh-C-ceEEEeecccccCCcc----cCCCccccc---
Confidence 778999999999975 456677788999999999999999985 3 8999999999999842 222111110
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
...... ..+.-|...|.++|.|+-......|+.+.|.|+-++|||.. .|.+. +....+
T Consensus 159 -----------g~vnpi------gpr~cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm----~~~dg-rvvsnf 216 (350)
T KOG1429|consen 159 -----------GNVNPI------GPRSCYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRM----HMDDG-RVVSNF 216 (350)
T ss_pred -----------cccCcC------CchhhhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCcc----ccCCC-hhhHHH
Confidence 000000 00013445567777777766667899999999999999765 33331 111111
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhcc
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~ 420 (554)
+...-.+.--++.+++...+.|.+|+|+++++++++..... .-+|++++ +.+|+.|+++++.+..+.
T Consensus 217 ~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s~~~------~pvNiGnp--~e~Tm~elAemv~~~~~~ 283 (350)
T KOG1429|consen 217 IAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMESDYR------GPVNIGNP--GEFTMLELAEMVKELIGP 283 (350)
T ss_pred HHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcCCCc------CCcccCCc--cceeHHHHHHHHHHHcCC
Confidence 11112233345678999999999999999999999876543 34999999 789999999999998853
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=203.31 Aligned_cols=233 Identities=17% Similarity=0.180 Sum_probs=161.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|||||||||||++|+++|++.+.. .+|+++++.. ...+.... ...++.++.+|++++ +.
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~-~~V~~~~r~~~~~~~~~~~~-------~~~~~~~v~~Dl~d~------~~ 67 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNP-KKIIIYSRDELKQWEMQQKF-------PAPCLRFFIGDVRDK------ER 67 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCC-cEEEEEcCChhHHHHHHHHh-------CCCcEEEEEccCCCH------HH
Confidence 46789999999999999999999987622 2566665321 11222111 124688999999988 88
Q ss_pred HHHHhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCC
Q 042694 186 ADVIAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
+..+.+++|+|||+||.... ..++...+++|+.|+.+++++|.+. ++++||++||.....
T Consensus 68 l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~~~iV~~SS~~~~~---------------- 130 (324)
T TIGR03589 68 LTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GVKRVVALSTDKAAN---------------- 130 (324)
T ss_pred HHHHHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC----------------
Confidence 88888899999999997532 2345678999999999999999984 788999999952210
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeecccCCccccccCC
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIESTCKEPFSGWMEGN 339 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~ 339 (554)
+.. .|..+|..+|.++..+. ...|++++++||+.|+|+....++-+..
T Consensus 131 ---------------p~~------------~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~~i~~~~~-- 181 (324)
T TIGR03589 131 ---------------PIN------------LYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGSVVPFFKS-- 181 (324)
T ss_pred ---------------CCC------------HHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCCcHHHHHH--
Confidence 001 23334556666654322 3468999999999999965321221111
Q ss_pred CCccceeeeeccce--eeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 340 RMMDPIILYYGKGQ--LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 340 ~~~~~i~~~~~~G~--~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
....|. ++. .+++...++++|||+|++++.++.... .+.+|+ +++ ..+++.|+++.+.+.
T Consensus 182 --------~~~~~~~~~~i--~~~~~~r~~i~v~D~a~a~~~al~~~~-----~~~~~~-~~~--~~~sv~el~~~i~~~ 243 (324)
T TIGR03589 182 --------LKEEGVTELPI--TDPRMTRFWITLEQGVNFVLKSLERML-----GGEIFV-PKI--PSMKITDLAEAMAPE 243 (324)
T ss_pred --------HHHhCCCCeee--CCCCceEeeEEHHHHHHHHHHHHhhCC-----CCCEEc-cCC--CcEEHHHHHHHHHhh
Confidence 111222 221 356677899999999999999876521 236885 444 468999999999886
Q ss_pred h
Q 042694 418 Y 418 (554)
Q Consensus 418 ~ 418 (554)
.
T Consensus 244 ~ 244 (324)
T TIGR03589 244 C 244 (324)
T ss_pred C
Confidence 4
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=199.01 Aligned_cols=260 Identities=15% Similarity=0.195 Sum_probs=170.6
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+|||||||||+|++++++|++.+++ |++++.. ..+.+.... ...++..+.+|+.++ +.+..
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~---V~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~------~~~~~ 64 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHE---VVVLDNLSNGSPEALKRGE-------RITRVTFVEGDLRDR------ELLDR 64 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCe---EEEEeCCCccchhhhhhhc-------cccceEEEECCCCCH------HHHHH
Confidence 5899999999999999999998765 4444321 111111100 012577889999988 77777
Q ss_pred Hhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCc
Q 042694 189 IAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSI 263 (554)
Q Consensus 189 l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~ 263 (554)
+++ ++|+|||+|+..... ....+.+..|+.++.+++++|.+. ++++||++||.++++.... .++++.++.
T Consensus 65 ~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~ss~~~~g~~~~----~~~~e~~~~ 139 (328)
T TIGR01179 65 LFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GVKKFIFSSSAAVYGEPSS----IPISEDSPL 139 (328)
T ss_pred HHHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CCCEEEEecchhhcCCCCC----CCccccCCC
Confidence 665 799999999976442 245577889999999999999884 7889999999998875321 112221110
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc-CCCcEEEEccceeeecccCCccccccCCC-C
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER-GDIPVVIIRPSVIESTCKEPFSGWMEGNR-M 341 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~-~glp~~I~Rp~~V~g~~~~p~~g~~~~~~-~ 341 (554)
.+.. .|..+|..+|.+....... .+++++|+||+.|||+...+..++..... .
T Consensus 140 -------------~~~~------------~y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~ 194 (328)
T TIGR01179 140 -------------GPIN------------PYGRSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITH 194 (328)
T ss_pred -------------CCCC------------chHHHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccch
Confidence 0001 3455566666666554433 68999999999999986544333321100 0
Q ss_pred ccceeeeec--c-ceeee----ee-cCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHH
Q 042694 342 MDPIILYYG--K-GQLTG----FL-VDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARL 413 (554)
Q Consensus 342 ~~~i~~~~~--~-G~~~~----~~-~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~ 413 (554)
..+.+.... . +.+.. ++ .+++...++||++|+++++..++..... ...+++||++++ .+++++|+++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~~--~~~~~~~n~~~~--~~~s~~ei~~~ 270 (328)
T TIGR01179 195 LIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLN--GGESHVYNLGYG--QGFSVLEVIEA 270 (328)
T ss_pred HHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhhc--CCCcceEEcCCC--CcccHHHHHHH
Confidence 000000000 1 11111 11 2456678999999999999988765321 123579999998 78999999999
Q ss_pred HHhHhccC
Q 042694 414 LHEHYSAS 421 (554)
Q Consensus 414 ~~~~~~~~ 421 (554)
+.+.+|+.
T Consensus 271 ~~~~~g~~ 278 (328)
T TIGR01179 271 FKKVSGVD 278 (328)
T ss_pred HHHHhCCC
Confidence 99999864
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=201.81 Aligned_cols=229 Identities=17% Similarity=0.254 Sum_probs=144.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|.+.|.+++. .++..... ..|+.+. +....+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~---~v~~~~r~------------------------~~dl~d~------~~~~~~~ 47 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY---EVIATSRS------------------------DLDLTDP------EAVAKLL 47 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE---EEEEESTT------------------------CS-TTSH------HHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC---EEEEeCch------------------------hcCCCCH------HHHHHHH
Confidence 6899999999999999999987654 33333221 4577665 6666665
Q ss_pred c--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 191 K--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 191 ~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
+ ++|+||||||..+.+ .+++.++++|+.++.+|+++|.+. + .++||+||.+|+.... ..+|.|.+...
T Consensus 48 ~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~-~-~~li~~STd~VFdG~~----~~~y~E~d~~~- 120 (286)
T PF04321_consen 48 EAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER-G-ARLIHISTDYVFDGDK----GGPYTEDDPPN- 120 (286)
T ss_dssp HHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC-T--EEEEEEEGGGS-SST----SSSB-TTS----
T ss_pred HHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc-C-CcEEEeeccEEEcCCc----ccccccCCCCC-
Confidence 5 699999999987753 478899999999999999999984 4 4899999999997652 33455444321
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
+.+. |+.+| ..+|..+.+..-...|+|+|.+||.....+..|+..
T Consensus 121 ------------P~~~------------YG~~K----~~~E~~v~~~~~~~~IlR~~~~~g~~~~~~~~~~~~------- 165 (286)
T PF04321_consen 121 ------------PLNV------------YGRSK----LEGEQAVRAACPNALILRTSWVYGPSGRNFLRWLLR------- 165 (286)
T ss_dssp -------------SSH------------HHHHH----HHHHHHHHHH-SSEEEEEE-SEESSSSSSHHHHHHH-------
T ss_pred ------------CCCH------------HHHHH----HHHHHHHHHhcCCEEEEecceecccCCCchhhhHHH-------
Confidence 1222 22223 344444332234899999999999855434344321
Q ss_pred eeeeccc-eeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 346 ILYYGKG-QLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 346 ~~~~~~G-~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
....| .+. ...+.....++++|+|++++.++..... +....++||++++ +.+|+.|+.+.+.+.++..+
T Consensus 166 --~~~~~~~i~---~~~d~~~~p~~~~dlA~~i~~l~~~~~~-~~~~~Giyh~~~~--~~~S~~e~~~~i~~~~~~~~ 235 (286)
T PF04321_consen 166 --RLRQGEPIK---LFDDQYRSPTYVDDLARVILELIEKNLS-GASPWGIYHLSGP--ERVSRYEFAEAIAKILGLDP 235 (286)
T ss_dssp --HHHCTSEEE---EESSCEE--EEHHHHHHHHHHHHHHHHH--GGG-EEEE---B--S-EEHHHHHHHHHHHHTHCT
T ss_pred --HHhcCCeeE---eeCCceeCCEEHHHHHHHHHHHHHhccc-ccccceeEEEecC--cccCHHHHHHHHHHHhCCCC
Confidence 11222 222 2246678899999999999999877543 1122479999999 78999999999999999876
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=203.82 Aligned_cols=238 Identities=18% Similarity=0.175 Sum_probs=156.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++|+|||||||+|++++++|++++++ |+++.+... ................+++++.||++++ +.+.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~---V~~l~R~~~-~~~~~~~~~~~~~~~~~v~~v~~Dl~d~------~~l~ 127 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYN---VVAVAREKS-GIRGKNGKEDTKKELPGAEVVFGDVTDA------DSLR 127 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEEechh-hccccchhhHHhhhcCCceEEEeeCCCH------HHHH
Confidence 45789999999999999999999998865 444433211 1000000000000124688999999998 7787
Q ss_pred HHhc----CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCc
Q 042694 188 VIAK----EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSI 263 (554)
Q Consensus 188 ~l~~----~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~ 263 (554)
.+++ ++|+||||+|.... .....+++|+.++.+++++|++. ++++||++||.+++....
T Consensus 128 ~~~~~~~~~~D~Vi~~aa~~~~--~~~~~~~vn~~~~~~ll~aa~~~-gv~r~V~iSS~~v~~p~~-------------- 190 (390)
T PLN02657 128 KVLFSEGDPVDVVVSCLASRTG--GVKDSWKIDYQATKNSLDAGREV-GAKHFVLLSAICVQKPLL-------------- 190 (390)
T ss_pred HHHHHhCCCCcEEEECCccCCC--CCccchhhHHHHHHHHHHHHHHc-CCCEEEEEeeccccCcch--------------
Confidence 7776 59999999885321 12345678999999999999984 889999999987643210
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
.|...|...|..+.. ...+++++|+||+.+|++. .+.+..
T Consensus 191 -----------------------------~~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~----~~~~~~----- 230 (390)
T PLN02657 191 -----------------------------EFQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL----GGQVEI----- 230 (390)
T ss_pred -----------------------------HHHHHHHHHHHHHHh--ccCCCCEEEEccHHHhccc----HHHHHh-----
Confidence 001112222322221 2368999999999998742 122111
Q ss_pred ceeeeeccceeeeeecCCCcc-cccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 344 PIILYYGKGQLTGFLVDPNGI-LDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~-~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
...|....+.++++.. .++|+++|+|.+++.++..+.. .+++||++++. +.+|++|+++.+.+.+|++|
T Consensus 231 -----~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~~----~~~~~~Iggp~-~~~S~~Eia~~l~~~lG~~~ 300 (390)
T PLN02657 231 -----VKDGGPYVMFGDGKLCACKPISEADLASFIADCVLDESK----INKVLPIGGPG-KALTPLEQGEMLFRILGKEP 300 (390)
T ss_pred -----hccCCceEEecCCcccccCceeHHHHHHHHHHHHhCccc----cCCEEEcCCCC-cccCHHHHHHHHHHHhCCCC
Confidence 1122222233555543 3679999999999888764322 24899998752 47899999999999999754
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=185.60 Aligned_cols=223 Identities=19% Similarity=0.245 Sum_probs=162.0
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK 191 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~ 191 (554)
+|||||++|.||..|.+.|. .+. .|+.++.. ..|++++ +...++++
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~---~v~a~~~~------------------------~~Ditd~------~~v~~~i~ 47 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEF---EVIATDRA------------------------ELDITDP------DAVLEVIR 47 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCc---eEEeccCc------------------------cccccCh------HHHHHHHH
Confidence 49999999999999999997 233 33333221 1588888 66666665
Q ss_pred --CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccc
Q 042694 192 --EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 192 --~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~ 266 (554)
++|+|||+||.+..+ ..++.++.+|..|+.++.++|++. + -++||+||.||+.... ..+|.|++...|
T Consensus 48 ~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~-g-a~lVhiSTDyVFDG~~----~~~Y~E~D~~~P- 120 (281)
T COG1091 48 ETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV-G-ARLVHISTDYVFDGEK----GGPYKETDTPNP- 120 (281)
T ss_pred hhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh-C-CeEEEeecceEecCCC----CCCCCCCCCCCC-
Confidence 689999999998764 367899999999999999999985 3 3899999999998754 345666554322
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
.+ .|+.+|+..|..+. ..+-...|+|.++|||.....|..++-.
T Consensus 121 ------------~n------------vYG~sKl~GE~~v~----~~~~~~~I~Rtswv~g~~g~nFv~tml~-------- 164 (281)
T COG1091 121 ------------LN------------VYGRSKLAGEEAVR----AAGPRHLILRTSWVYGEYGNNFVKTMLR-------- 164 (281)
T ss_pred ------------hh------------hhhHHHHHHHHHHH----HhCCCEEEEEeeeeecCCCCCHHHHHHH--------
Confidence 22 35555566655554 3456799999999999766444433321
Q ss_pred eeeccc-eeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 347 LYYGKG-QLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 347 ~~~~~G-~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
....| .+. .-.+.....+++.|+|.+|..++..... .++||++++ ..+||-|+.+.+.+.++...
T Consensus 165 -la~~~~~l~---vv~Dq~gsPt~~~dlA~~i~~ll~~~~~-----~~~yH~~~~--g~~Swydfa~~I~~~~~~~~ 230 (281)
T COG1091 165 -LAKEGKELK---VVDDQYGSPTYTEDLADAILELLEKEKE-----GGVYHLVNS--GECSWYEFAKAIFEEAGVDG 230 (281)
T ss_pred -HhhcCCceE---EECCeeeCCccHHHHHHHHHHHHhcccc-----CcEEEEeCC--CcccHHHHHHHHHHHhCCCc
Confidence 11222 333 2356677889999999999998765432 349999998 57899999999999988544
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-21 Score=193.39 Aligned_cols=221 Identities=12% Similarity=0.118 Sum_probs=138.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
.|+|||||||||||++|++.|++++++| +. ..+|+.+. +.+...
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V---~~---------------------------~~~~~~~~------~~v~~~ 52 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDF---HY---------------------------GSGRLENR------ASLEAD 52 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEE---EE---------------------------ecCccCCH------HHHHHH
Confidence 4789999999999999999999988754 11 12333332 223222
Q ss_pred hc--CccEEEEcCCCCC------chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc-ee-eccccCC
Q 042694 190 AK--EVDVIVNSAANTT------FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG-KV-MEKPFCM 259 (554)
Q Consensus 190 ~~--~vdiViH~AA~v~------~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~-~i-~E~~~~~ 259 (554)
++ ++|+|||+||... +..++.+.+++|+.||.+++++|++. +++ ++++||.++++.... .. +..++++
T Consensus 53 l~~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~-gv~-~v~~sS~~vy~~~~~~p~~~~~~~~E 130 (298)
T PLN02778 53 IDAVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER-GLV-LTNYATGCIFEYDDAHPLGSGIGFKE 130 (298)
T ss_pred HHhcCCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCC-EEEEecceEeCCCCCCCcccCCCCCc
Confidence 22 7999999999764 23467789999999999999999985 675 567787788764210 00 0111222
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCC
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGN 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~ 339 (554)
++.. .++.+ .|+.+|..+|.++..+ -+..++|++++++........++..
T Consensus 131 e~~p------------~~~~s------------~Yg~sK~~~E~~~~~y-----~~~~~lr~~~~~~~~~~~~~~fi~~- 180 (298)
T PLN02778 131 EDTP------------NFTGS------------FYSKTKAMVEELLKNY-----ENVCTLRVRMPISSDLSNPRNFITK- 180 (298)
T ss_pred CCCC------------CCCCC------------chHHHHHHHHHHHHHh-----hccEEeeecccCCcccccHHHHHHH-
Confidence 1110 01101 3444455555554432 2567889988776432111122211
Q ss_pred CCccceeeeeccce-eeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHh
Q 042694 340 RMMDPIILYYGKGQ-LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHY 418 (554)
Q Consensus 340 ~~~~~i~~~~~~G~-~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~ 418 (554)
+..+. .... ..++++|+|++++++.++.. .. ..+||++++ .++++.|+++.+++.+
T Consensus 181 ---------~~~~~~~~~~------~~s~~yv~D~v~al~~~l~~-~~-----~g~yNigs~--~~iS~~el~~~i~~~~ 237 (298)
T PLN02778 181 ---------ITRYEKVVNI------PNSMTILDELLPISIEMAKR-NL-----TGIYNFTNP--GVVSHNEILEMYRDYI 237 (298)
T ss_pred ---------HHcCCCeeEc------CCCCEEHHHHHHHHHHHHhC-CC-----CCeEEeCCC--CcccHHHHHHHHHHHh
Confidence 11111 1111 13799999999999988743 11 259999998 7999999999999999
Q ss_pred ccC
Q 042694 419 SAS 421 (554)
Q Consensus 419 ~~~ 421 (554)
+..
T Consensus 238 ~~~ 240 (298)
T PLN02778 238 DPS 240 (298)
T ss_pred CCC
Confidence 853
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-21 Score=201.24 Aligned_cols=238 Identities=13% Similarity=0.176 Sum_probs=152.9
Q ss_pred cCcEEEEe----cccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCC
Q 042694 109 KAKNFFVT----GATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLE 182 (554)
Q Consensus 109 ~~~~VlIT----GaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs 182 (554)
.+++|||| |||||+|++|++.|++.|++| +++.+.. ...+.......+.+.....++.+.||+.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V---~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~----- 122 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEV---TLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADV----- 122 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEE---EEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHH-----
Confidence 35789999 999999999999999988754 4443221 111110000000111123588899998652
Q ss_pred HHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCC
Q 042694 183 EDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 183 ~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
+..- -..++|+|||+++. ++.++++++++|++ .++++|||+||.++|+... +.++.+.+.
T Consensus 123 -~~~~-~~~~~d~Vi~~~~~-------------~~~~~~~ll~aa~~-~gvkr~V~~SS~~vyg~~~----~~p~~E~~~ 182 (378)
T PLN00016 123 -KSKV-AGAGFDVVYDNNGK-------------DLDEVEPVADWAKS-PGLKQFLFCSSAGVYKKSD----EPPHVEGDA 182 (378)
T ss_pred -Hhhh-ccCCccEEEeCCCC-------------CHHHHHHHHHHHHH-cCCCEEEEEccHhhcCCCC----CCCCCCCCc
Confidence 1111 12479999999763 24578899999998 4899999999999998632 111111111
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC-ccccccCCCC
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP-FSGWMEGNRM 341 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p-~~g~~~~~~~ 341 (554)
. . ... +|+.+|.+ .+..+++++|+||+.+||+.... +..|.
T Consensus 183 ~-------------~---------------p~~-sK~~~E~~----l~~~~l~~~ilRp~~vyG~~~~~~~~~~~----- 224 (378)
T PLN00016 183 V-------------K---------------PKA-GHLEVEAY----LQKLGVNWTSFRPQYIYGPGNNKDCEEWF----- 224 (378)
T ss_pred C-------------C---------------Ccc-hHHHHHHH----HHHcCCCeEEEeceeEECCCCCCchHHHH-----
Confidence 0 0 000 23444443 33468999999999999976432 11121
Q ss_pred ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 342 MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 342 ~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
+..+..|....++++++...++++++|+|++++.++..... .+++||++++ +++++.|+++.+.+.+|..
T Consensus 225 ----~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~----~~~~yni~~~--~~~s~~el~~~i~~~~g~~ 294 (378)
T PLN00016 225 ----FDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNPKA----AGQIFNIVSD--RAVTFDGMAKACAKAAGFP 294 (378)
T ss_pred ----HHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCccc----cCCEEEecCC--CccCHHHHHHHHHHHhCCC
Confidence 11111222223445677788999999999999988765322 2479999998 7899999999999999875
Q ss_pred C
Q 042694 422 P 422 (554)
Q Consensus 422 p 422 (554)
+
T Consensus 295 ~ 295 (378)
T PLN00016 295 E 295 (378)
T ss_pred C
Confidence 4
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=187.47 Aligned_cols=237 Identities=16% Similarity=0.185 Sum_probs=146.3
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcC
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKE 192 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~ 192 (554)
|||||||||||+++++.|+++++ +|+++.+.... .... ....+ .|+.. ........+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~-----~~~~----~~~~~----~~~~~-------~~~~~~~~~ 57 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH---EVTILTRSPPA-----GANT----KWEGY----KPWAP-------LAESEALEG 57 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC---EEEEEeCCCCC-----CCcc----cceee----ecccc-------cchhhhcCC
Confidence 69999999999999999999875 55655532110 0000 00011 11111 122334468
Q ss_pred ccEEEEcCCCCCch-----hhHHHHHHHhchHHHHHHHHHHHcCCC--ceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 193 VDVIVNSAANTTFD-----ERYDIAIDINTRGPCRLMEFAKQCNKL--KLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 193 vdiViH~AA~v~~~-----~~~~~~~~~Nv~gt~~ll~la~~~~~~--k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
+|+|||+||..... .....+.++|+.+|++++++|++. +. ..|++.||.++|+... +.++++..+.
T Consensus 58 ~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~~i~~S~~~~yg~~~----~~~~~E~~~~-- 130 (292)
T TIGR01777 58 ADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA-EQKPKVFISASAVGYYGTSE----DRVFTEEDSP-- 130 (292)
T ss_pred CCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc-CCCceEEEEeeeEEEeCCCC----CCCcCcccCC--
Confidence 99999999975432 245678899999999999999985 44 4677788888887532 1122222110
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
.+.+..... +...|.....+ .+.+++++|+||+.|||+... +.... . ..
T Consensus 131 -----------~~~~~~~~~------------~~~~e~~~~~~-~~~~~~~~ilR~~~v~G~~~~----~~~~~--~-~~ 179 (292)
T TIGR01777 131 -----------AGDDFLAEL------------CRDWEEAAQAA-EDLGTRVVLLRTGIVLGPKGG----ALAKM--L-PP 179 (292)
T ss_pred -----------CCCChHHHH------------HHHHHHHhhhc-hhcCCceEEEeeeeEECCCcc----hhHHH--H-HH
Confidence 011111110 01112222222 235899999999999997532 21110 0 00
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
+. ...+. ..++++...++|+|||+|+++..++..... ..+||++++ .++++.|+++.+.+.+|.+
T Consensus 180 ~~-~~~~~---~~g~~~~~~~~i~v~Dva~~i~~~l~~~~~-----~g~~~~~~~--~~~s~~di~~~i~~~~g~~ 244 (292)
T TIGR01777 180 FR-LGLGG---PLGSGRQWFSWIHIEDLVQLILFALENASI-----SGPVNATAP--EPVRNKEFAKALARALHRP 244 (292)
T ss_pred Hh-cCccc---ccCCCCcccccEeHHHHHHHHHHHhcCccc-----CCceEecCC--CccCHHHHHHHHHHHhCCC
Confidence 00 01111 135677889999999999999988754322 358999998 7999999999999999863
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-21 Score=158.10 Aligned_cols=91 Identities=37% Similarity=0.527 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcccccccccCcchHHHHHHHHHHHHHHHHHHHhccccccceEEEechhHHHHHHhcChhhccccccCCC
Q 042694 447 AHLWRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAKHLADIYEPYTFYGGRFDNSNTERLMEKMSEEEKRKFGFDVG 526 (554)
Q Consensus 447 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~l~~~D~~~F~~d~~ 526 (554)
.|.+|+.+.+..+... .+++.+.++++|+. +++++++||++++|+|+++|+++|++.|+++||++|+||++
T Consensus 2 ~~~lpa~~~d~~~~l~--g~~~~~~~~~~k~~-------~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~~Dr~~F~fD~~ 72 (92)
T cd09071 2 LHLLPAYLLDLLLRLL--GRKPRLLKLYRKIH-------KLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIR 72 (92)
T ss_pred cccchHHHHHHHHHHh--CCChHHHHHHHHHH-------HHHHHhhccccCeEEeeCcHHHHHHHHCCHHHHHhCCCCCC
Confidence 3667777766432221 23445556666654 46799999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhchhHHHHHhh
Q 042694 527 SIDWKEYITNVHIPGLRRHVM 547 (554)
Q Consensus 527 ~idW~~Y~~~~~~~G~r~y~l 547 (554)
+|||++|+++ +++|+|+|++
T Consensus 73 ~idW~~Y~~~-~~~G~r~yll 92 (92)
T cd09071 73 SIDWDDYFEN-YIPGLRKYLL 92 (92)
T ss_pred CCCHHHHHHH-HHHHHHHHhC
Confidence 9999999999 7999999986
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=198.98 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=145.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|+|||||||+|++++++|++.+++ |+.+++...+ . ...++..+.+|+.++ +.+..++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~---Vv~l~R~~~~----~--------~~~~v~~v~gDL~D~------~~l~~al 59 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHE---VVGIARHRPD----S--------WPSSADFIAADIRDA------TAVESAM 59 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCE---EEEEECCchh----h--------cccCceEEEeeCCCH------HHHHHHH
Confidence 47999999999999999999998864 4444432111 0 113577899999988 7888888
Q ss_pred cCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccccc
Q 042694 191 KEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVS 270 (554)
Q Consensus 191 ~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~ 270 (554)
+++|+|||+|+.... ..++|+.||.+++++|++. ++++|||+||.. +
T Consensus 60 ~~vD~VVHlAa~~~~------~~~vNv~GT~nLLeAa~~~-gvkr~V~iSS~~-----K--------------------- 106 (854)
T PRK05865 60 TGADVVAHCAWVRGR------NDHINIDGTANVLKAMAET-GTGRIVFTSSGH-----Q--------------------- 106 (854)
T ss_pred hCCCEEEECCCcccc------hHHHHHHHHHHHHHHHHHc-CCCeEEEECCcH-----H---------------------
Confidence 899999999986432 4688999999999999984 788999999853 0
Q ss_pred cccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeec
Q 042694 271 NSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYG 350 (554)
Q Consensus 271 ~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~ 350 (554)
..+|+++ ...+++++|+||++|||+.. +.|+.... .
T Consensus 107 ----------------------------~aaE~ll----~~~gl~~vILRp~~VYGP~~---~~~i~~ll---~------ 142 (854)
T PRK05865 107 ----------------------------PRVEQML----ADCGLEWVAVRCALIFGRNV---DNWVQRLF---A------ 142 (854)
T ss_pred ----------------------------HHHHHHH----HHcCCCEEEEEeceEeCCCh---HHHHHHHh---c------
Confidence 1122222 23589999999999999752 23432210 0
Q ss_pred cceeeee-ecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 351 KGQLTGF-LVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 351 ~G~~~~~-~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
.+.+ .++.+...|+|||||+|++++.++..... .+.+||++++ +++|+.|+++.+.+.
T Consensus 143 ---~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~----~ggvyNIgsg--~~~Si~EIae~l~~~ 201 (854)
T PRK05865 143 ---LPVLPAGYADRVVQVVHSDDAQRLLVRALLDTVI----DSGPVNLAAP--GELTFRRIAAALGRP 201 (854)
T ss_pred ---CceeccCCCCceEeeeeHHHHHHHHHHHHhCCCc----CCCeEEEECC--CcccHHHHHHHHhhh
Confidence 0111 12344567999999999999888753221 2469999998 789999999988764
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-18 Score=158.98 Aligned_cols=234 Identities=16% Similarity=0.228 Sum_probs=151.3
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc-
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK- 191 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~- 191 (554)
|+|||||||||++|+..|.+.+++| +++.+... +.... ....+..+ +.++....
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v---~iltR~~~-~~~~~--------~~~~v~~~-------------~~~~~~~~~ 55 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQV---TILTRRPP-KASQN--------LHPNVTLW-------------EGLADALTL 55 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeE---EEEEcCCc-chhhh--------cCcccccc-------------chhhhcccC
Confidence 6899999999999999999988865 33322110 00000 01111100 22223333
Q ss_pred CccEEEEcCCCC----Cchhh-HHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 192 EVDVIVNSAANT----TFDER-YDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 192 ~vdiViH~AA~v----~~~~~-~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
++|+|||+|+.. ++.+. -+..++.-+..|+.|.++..++ .+.+.|+--|.+.-||+.. ++.++|..+
T Consensus 56 ~~DavINLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~----~~~~tE~~~--- 128 (297)
T COG1090 56 GIDAVINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSG----DRVVTEESP--- 128 (297)
T ss_pred CCCEEEECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCC----ceeeecCCC---
Confidence 799999999963 24443 4577888999999999998854 3566777777777788753 444444322
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
+..+...++.. .|..+.+ .+ +..|.+++++|.|+|.|+....++-.. +.
T Consensus 129 -----------~g~~Fla~lc~----------~WE~~a~--~a-~~~gtRvvllRtGvVLs~~GGaL~~m~-------~~ 177 (297)
T COG1090 129 -----------PGDDFLAQLCQ----------DWEEEAL--QA-QQLGTRVVLLRTGVVLSPDGGALGKML-------PL 177 (297)
T ss_pred -----------CCCChHHHHHH----------HHHHHHh--hh-hhcCceEEEEEEEEEecCCCcchhhhc-------ch
Confidence 11222111110 1211111 11 345899999999999996653322221 11
Q ss_pred eeeecc-ceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 346 ILYYGK-GQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 346 ~~~~~~-G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
+. .+. |.+ +++...+.|||+||++++|..+....... ..||+++| +|++..+|.+.+.+.++++
T Consensus 178 fk-~glGG~~----GsGrQ~~SWIhieD~v~~I~fll~~~~ls-----Gp~N~taP--~PV~~~~F~~al~r~l~RP 242 (297)
T COG1090 178 FK-LGLGGKL----GSGRQWFSWIHIEDLVNAILFLLENEQLS-----GPFNLTAP--NPVRNKEFAHALGRALHRP 242 (297)
T ss_pred hh-hccCCcc----CCCCceeeeeeHHHHHHHHHHHHhCcCCC-----CcccccCC--CcCcHHHHHHHHHHHhCCC
Confidence 11 122 333 78888999999999999999998876553 48999999 9999999999999999875
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-18 Score=183.75 Aligned_cols=201 Identities=15% Similarity=0.162 Sum_probs=136.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|+++|+++++ +|.++++.... . ...++.++.+|+.++ . +..+.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~---~Vi~ldr~~~~-----~-------~~~~ve~v~~Dl~d~------~-l~~al 58 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH---TVSGIAQHPHD-----A-------LDPRVDYVCASLRNP------V-LQELA 58 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeCChhh-----c-------ccCCceEEEccCCCH------H-HHHHh
Confidence 4799999999999999999999886 45566542110 0 123577899999876 3 45666
Q ss_pred cCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccccc
Q 042694 191 KEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVS 270 (554)
Q Consensus 191 ~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~ 270 (554)
.++|+|||+|+.... . ...+|+.|+.+++++|++. +. ++||+||.+ +... .+
T Consensus 59 ~~~D~VIHLAa~~~~-~----~~~vNv~Gt~nLleAA~~~-Gv-RiV~~SS~~--G~~~------~~------------- 110 (699)
T PRK12320 59 GEADAVIHLAPVDTS-A----PGGVGITGLAHVANAAARA-GA-RLLFVSQAA--GRPE------LY------------- 110 (699)
T ss_pred cCCCEEEEcCccCcc-c----hhhHHHHHHHHHHHHHHHc-CC-eEEEEECCC--CCCc------cc-------------
Confidence 789999999986422 1 2358999999999999985 65 699999863 2110 00
Q ss_pred cccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc-cccccCCCCccceeeee
Q 042694 271 NSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF-SGWMEGNRMMDPIILYY 349 (554)
Q Consensus 271 ~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~-~g~~~~~~~~~~i~~~~ 349 (554)
+ .+|.+. ...++|++|+|+++|||+...+. ...+ ..++
T Consensus 111 ------~----------------------~aE~ll----~~~~~p~~ILR~~nVYGp~~~~~~~r~I------~~~l--- 149 (699)
T PRK12320 111 ------R----------------------QAETLV----STGWAPSLVIRIAPPVGRQLDWMVCRTV------ATLL--- 149 (699)
T ss_pred ------c----------------------HHHHHH----HhcCCCEEEEeCceecCCCCcccHhHHH------HHHH---
Confidence 0 122222 22468999999999999743211 0111 1101
Q ss_pred ccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 350 GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 350 ~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
.... .+..+.+++|||++++++.++.... ..+||++++ +.+|+.|+++.+...
T Consensus 150 -~~~~------~~~pI~vIyVdDvv~alv~al~~~~------~GiyNIG~~--~~~Si~el~~~i~~~ 202 (699)
T PRK12320 150 -RSKV------SARPIRVLHLDDLVRFLVLALNTDR------NGVVDLATP--DTTNVVTAWRLLRSV 202 (699)
T ss_pred -HHHH------cCCceEEEEHHHHHHHHHHHHhCCC------CCEEEEeCC--CeeEHHHHHHHHHHh
Confidence 0111 1223456999999999988875411 249999999 789999998888765
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=185.21 Aligned_cols=221 Identities=12% Similarity=0.112 Sum_probs=140.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
..|+|||||||||||++|++.|++.+.+| ....+|++++ +.+..
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v------------------------------~~~~~~l~d~------~~v~~ 422 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAY------------------------------EYGKGRLEDR------SSLLA 422 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeE------------------------------EeeccccccH------HHHHH
Confidence 34789999999999999999999876543 1223566655 44444
Q ss_pred Hhc--CccEEEEcCCCCC---c---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccccee--eccccC
Q 042694 189 IAK--EVDVIVNSAANTT---F---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKV--MEKPFC 258 (554)
Q Consensus 189 l~~--~vdiViH~AA~v~---~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i--~E~~~~ 258 (554)
+++ ++|+||||||... . ..++..++++|+.||.+|+++|++. +++ ++|+||.+|++...... .+.++.
T Consensus 423 ~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~-g~~-~v~~Ss~~v~~~~~~~~~~~~~p~~ 500 (668)
T PLN02260 423 DIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN-GLL-MMNFATGCIFEYDAKHPEGSGIGFK 500 (668)
T ss_pred HHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc-CCe-EEEEcccceecCCcccccccCCCCC
Confidence 444 7999999999763 2 2467889999999999999999995 675 77889999986421000 012333
Q ss_pred CCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC
Q 042694 259 MGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG 338 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~ 338 (554)
+++... ++.+ .|+.+|..+|.++..+ -...++|+..+||.......+++
T Consensus 501 E~~~~~------------~~~~------------~Yg~sK~~~E~~~~~~-----~~~~~~r~~~~~~~~~~~~~nfv-- 549 (668)
T PLN02260 501 EEDKPN------------FTGS------------FYSKTKAMVEELLREY-----DNVCTLRVRMPISSDLSNPRNFI-- 549 (668)
T ss_pred cCCCCC------------CCCC------------hhhHHHHHHHHHHHhh-----hhheEEEEEEecccCCCCccHHH--
Confidence 322110 1101 3555566666665432 25788899999864321111111
Q ss_pred CCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHh
Q 042694 339 NRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHY 418 (554)
Q Consensus 339 ~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~ 418 (554)
..++ .... .+ .+ + .+...+|+++.+++.++.. . .+.+||++++ .++||.|+++.+.+..
T Consensus 550 ----~~~~-~~~~-~~-~v---p---~~~~~~~~~~~~~~~l~~~-~-----~~giyni~~~--~~~s~~e~a~~i~~~~ 608 (668)
T PLN02260 550 ----TKIS-RYNK-VV-NI---P---NSMTVLDELLPISIEMAKR-N-----LRGIWNFTNP--GVVSHNEILEMYKDYI 608 (668)
T ss_pred ----HHHh-ccce-ee-cc---C---CCceehhhHHHHHHHHHHh-C-----CCceEEecCC--CcCcHHHHHHHHHHhc
Confidence 1111 1111 11 11 1 2456678888887776643 1 1369999998 6899999999999876
Q ss_pred c
Q 042694 419 S 419 (554)
Q Consensus 419 ~ 419 (554)
+
T Consensus 609 ~ 609 (668)
T PLN02260 609 D 609 (668)
T ss_pred C
Confidence 4
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=156.45 Aligned_cols=242 Identities=17% Similarity=0.168 Sum_probs=166.4
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHH-HcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQ-TYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~-~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
...+.|-.+-|.|||||||+.++.+|-+.|.+| |+-.+.+..+-..- -.+ .+..+.+..-|+.++
T Consensus 56 RsS~sGiVaTVFGAtGFlGryvvnklak~GSQv--iiPyR~d~~~~r~lkvmG------dLGQvl~~~fd~~De------ 121 (391)
T KOG2865|consen 56 RSSVSGIVATVFGATGFLGRYVVNKLAKMGSQV--IIPYRGDEYDPRHLKVMG------DLGQVLFMKFDLRDE------ 121 (391)
T ss_pred cccccceEEEEecccccccHHHHHHHhhcCCeE--EEeccCCccchhheeecc------cccceeeeccCCCCH------
Confidence 344667778899999999999999999988765 33233222221111 111 356778888898887
Q ss_pred HHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCc
Q 042694 184 DLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSI 263 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~ 263 (554)
+.++...+..++|||+-+.---..++ .+.++|+.+.+.+.+.|+++ ++.+|||+|+...+-...
T Consensus 122 dSIr~vvk~sNVVINLIGrd~eTknf-~f~Dvn~~~aerlAricke~-GVerfIhvS~Lganv~s~-------------- 185 (391)
T KOG2865|consen 122 DSIRAVVKHSNVVINLIGRDYETKNF-SFEDVNVHIAERLARICKEA-GVERFIHVSCLGANVKSP-------------- 185 (391)
T ss_pred HHHHHHHHhCcEEEEeeccccccCCc-ccccccchHHHHHHHHHHhh-ChhheeehhhccccccCh--------------
Confidence 88999999999999998852111222 56889999999999999995 999999999986432110
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
..++. +|...|.++...--..+|+||+.|||..+..+.-|..-.+.+
T Consensus 186 ----------------------Sr~Lr----------sK~~gE~aVrdafPeAtIirPa~iyG~eDrfln~ya~~~rk~- 232 (391)
T KOG2865|consen 186 ----------------------SRMLR----------SKAAGEEAVRDAFPEATIIRPADIYGTEDRFLNYYASFWRKF- 232 (391)
T ss_pred ----------------------HHHHH----------hhhhhHHHHHhhCCcceeechhhhcccchhHHHHHHHHHHhc-
Confidence 11121 233444444333456899999999997764444443222222
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCCC
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPC 423 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p~ 423 (554)
|.++-+.......-..|+|-|||.+|+.|+.++.. .+++|..++| ...++.|+++++.+...+-|.
T Consensus 233 --------~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s----~Gktye~vGP--~~yql~eLvd~my~~~~~~~r 298 (391)
T KOG2865|consen 233 --------GFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDS----MGKTYEFVGP--DRYQLSELVDIMYDMAREWPR 298 (391)
T ss_pred --------CceeeecCCcceeeccEEEehHHHHHHHhccCccc----cCceeeecCC--chhhHHHHHHHHHHHHhhccc
Confidence 22332222223345678999999999999877644 3689999999 788999999999998887663
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=159.56 Aligned_cols=209 Identities=13% Similarity=0.151 Sum_probs=139.9
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh-
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA- 190 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~- 190 (554)
+|+||||||++|++++++|++++.+| ++. .+++. +. ...++..+.+|+.++ +.+...+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V-~~~-~R~~~--~~-----------~~~~~~~~~~d~~d~------~~l~~a~~ 59 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPF-LVA-SRSSS--SS-----------AGPNEKHVKFDWLDE------DTWDNPFS 59 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcE-EEE-eCCCc--cc-----------cCCCCccccccCCCH------HHHHHHHh
Confidence 48999999999999999999988765 222 22211 00 113556688999888 7777776
Q ss_pred -----cC-ccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 191 -----KE-VDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 191 -----~~-vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
++ +|.|||+++.... . +..+.+++++|++. ++++|||+||..+.....
T Consensus 60 ~~~~~~g~~d~v~~~~~~~~~--~--------~~~~~~~i~aa~~~-gv~~~V~~Ss~~~~~~~~--------------- 113 (285)
T TIGR03649 60 SDDGMEPEISAVYLVAPPIPD--L--------APPMIKFIDFARSK-GVRRFVLLSASIIEKGGP--------------- 113 (285)
T ss_pred cccCcCCceeEEEEeCCCCCC--h--------hHHHHHHHHHHHHc-CCCEEEEeeccccCCCCc---------------
Confidence 56 9999999875421 1 13456899999984 899999999865432100
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
. . ...+...+ +..|++++++||+.++.....+ .+.. .
T Consensus 114 ------------~----~----------------~~~~~~l~---~~~gi~~tilRp~~f~~~~~~~--~~~~------~ 150 (285)
T TIGR03649 114 ------------A----M----------------GQVHAHLD---SLGGVEYTVLRPTWFMENFSEE--FHVE------A 150 (285)
T ss_pred ------------h----H----------------HHHHHHHH---hccCCCEEEEeccHHhhhhccc--cccc------c
Confidence 0 0 00011111 1148999999999887533111 0000 0
Q ss_pred eeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 345 IILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 345 i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
....|.+ +.+.++...++|+++|+++++..++..+.. .+++|+++++ .++|+.|+++.+.+.+|++
T Consensus 151 ---~~~~~~~--~~~~g~~~~~~v~~~Dva~~~~~~l~~~~~----~~~~~~l~g~--~~~s~~eia~~l~~~~g~~ 216 (285)
T TIGR03649 151 ---IRKENKI--YSATGDGKIPFVSADDIARVAYRALTDKVA----PNTDYVVLGP--ELLTYDDVAEILSRVLGRK 216 (285)
T ss_pred ---cccCCeE--EecCCCCccCcccHHHHHHHHHHHhcCCCc----CCCeEEeeCC--ccCCHHHHHHHHHHHhCCc
Confidence 0112332 224467788999999999999888765322 2478999998 7999999999999999974
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=148.08 Aligned_cols=182 Identities=18% Similarity=0.231 Sum_probs=126.2
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcC
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKE 192 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~ 192 (554)
|+|+||||++|+.++++|+++++ +|+++.+... ++.+ ..+++++.||+.++ +.+...+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~---~V~~~~R~~~-~~~~----------~~~~~~~~~d~~d~------~~~~~al~~ 60 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH---EVTALVRSPS-KAED----------SPGVEIIQGDLFDP------DSVKAALKG 60 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS---EEEEEESSGG-GHHH----------CTTEEEEESCTTCH------HHHHHHHTT
T ss_pred eEEECCCChHHHHHHHHHHHCCC---EEEEEecCch-hccc----------ccccccceeeehhh------hhhhhhhhh
Confidence 79999999999999999999885 4454432211 1111 46899999999988 888888899
Q ss_pred ccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccccccc
Q 042694 193 VDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNS 272 (554)
Q Consensus 193 vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~ 272 (554)
+|+|||+++.... +...+++++++|++. ++++++++||++++....+...... .
T Consensus 61 ~d~vi~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~~~~~~~~~~~~~~~-----~---------- 114 (183)
T PF13460_consen 61 ADAVIHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSAGVYRDPPGLFSDED-----K---------- 114 (183)
T ss_dssp SSEEEECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEETTGTTTCTSEEEGGT-----C----------
T ss_pred cchhhhhhhhhcc----------ccccccccccccccc-ccccceeeeccccCCCCCccccccc-----c----------
Confidence 9999999975433 177889999999995 8999999999998886432110000 0
Q ss_pred cCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeeccc
Q 042694 273 RRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKG 352 (554)
Q Consensus 273 ~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G 352 (554)
+.. . .+...+..+|...+..+++++++||+.++|..... + .++
T Consensus 115 ----~~~------~----------~~~~~~~~~e~~~~~~~~~~~ivrp~~~~~~~~~~--~---------~~~------ 157 (183)
T PF13460_consen 115 ----PIF------P----------EYARDKREAEEALRESGLNWTIVRPGWIYGNPSRS--Y---------RLI------ 157 (183)
T ss_dssp ----GGG------H----------HHHHHHHHHHHHHHHSTSEEEEEEESEEEBTTSSS--E---------EEE------
T ss_pred ----cch------h----------hhHHHHHHHHHHHHhcCCCEEEEECcEeEeCCCcc--e---------eEE------
Confidence 000 1 11223334455555569999999999999964320 0 000
Q ss_pred eeeeeecCCCcccccchhhHHHHHHHHHHH
Q 042694 353 QLTGFLVDPNGILDVVPADMVVNATLAAIA 382 (554)
Q Consensus 353 ~~~~~~~~~~~~~d~vpVD~va~aii~~~~ 382 (554)
..........|+++|+|.+++.++.
T Consensus 158 -----~~~~~~~~~~i~~~DvA~~~~~~l~ 182 (183)
T PF13460_consen 158 -----KEGGPQGVNFISREDVAKAIVEALE 182 (183)
T ss_dssp -----SSTSTTSHCEEEHHHHHHHHHHHHH
T ss_pred -----eccCCCCcCcCCHHHHHHHHHHHhC
Confidence 0123444689999999999998874
|
... |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=153.85 Aligned_cols=234 Identities=19% Similarity=0.215 Sum_probs=144.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++|+||||||++|+.++++|++.+++ |+++.+.. ++.....+ ...++.++.||+.+. .+.+.
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~---V~~~~R~~-~~~~~~~~------~~~~~~~~~~Dl~d~-----~~~l~ 79 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFA---VKAGVRDV-DKAKTSLP------QDPSLQIVRADVTEG-----SDKLV 79 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCE---EEEEecCH-HHHHHhcc------cCCceEEEEeeCCCC-----HHHHH
Confidence 45789999999999999999999998764 44433221 12222111 123688999999874 24454
Q ss_pred HHh-cCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccc
Q 042694 188 VIA-KEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 188 ~l~-~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~ 266 (554)
... .++|+|||+++......+ .....+|+.|+.++++++++ .++++||++||..+++...+ .++.
T Consensus 80 ~~~~~~~d~vi~~~g~~~~~~~-~~~~~~n~~~~~~ll~a~~~-~~~~~iV~iSS~~v~g~~~~----~~~~-------- 145 (251)
T PLN00141 80 EAIGDDSDAVICATGFRRSFDP-FAPWKVDNFGTVNLVEACRK-AGVTRFILVSSILVNGAAMG----QILN-------- 145 (251)
T ss_pred HHhhcCCCEEEECCCCCcCCCC-CCceeeehHHHHHHHHHHHH-cCCCEEEEEccccccCCCcc----cccC--------
Confidence 445 689999999886322122 22357899999999999998 57899999999998875321 0000
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
+ .+...+.+.. ....+..+|......|++++++||+.+++... .+ ...
T Consensus 146 ----------~---~~~~~~~~~~-------~~~~k~~~e~~l~~~gi~~~iirpg~~~~~~~---~~---------~~~ 193 (251)
T PLN00141 146 ----------P---AYIFLNLFGL-------TLVAKLQAEKYIRKSGINYTIVRPGGLTNDPP---TG---------NIV 193 (251)
T ss_pred ----------c---chhHHHHHHH-------HHHHHHHHHHHHHhcCCcEEEEECCCccCCCC---Cc---------eEE
Confidence 0 0000010000 01123334444444689999999999986321 11 000
Q ss_pred eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCc-ccHHHHHHHHHh
Q 042694 347 LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNP-LVFQDLARLLHE 416 (554)
Q Consensus 347 ~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~-it~~e~~~~~~~ 416 (554)
. . ........+|+.+|+|+++..++..+.. ...++.+.+...++ .++.++...+++
T Consensus 194 ~--~--------~~~~~~~~~i~~~dvA~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 194 M--E--------PEDTLYEGSISRDQVAEVAVEALLCPES----SYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred E--C--------CCCccccCcccHHHHHHHHHHHhcChhh----cCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 0 0 0111113468999999999998765432 24678887744454 788888877654
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-16 Score=155.41 Aligned_cols=238 Identities=16% Similarity=0.129 Sum_probs=143.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|||||||||||++++++|++.+. +|+++.+. ..+.++.. ...++..+.+|++++ +...
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~---~v~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~~~~------~~~~ 64 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGD---RVAATVRRPDALDDLKAR--------YGDRLWVLQLDVTDS------AAVR 64 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHh--------ccCceEEEEccCCCH------HHHH
Confidence 36899999999999999999999876 44544432 12222222 234788899999988 5555
Q ss_pred HHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+. .++|+|||+|+.... .+.++...++|+.|+.++++.+... .+.+++|++||.......
T Consensus 65 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-- 142 (276)
T PRK06482 65 AVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAY-- 142 (276)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCC--
Confidence 543 258999999997543 2456788899999999999998321 356799999996432110
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhh---cCCCcEEEEccceeeec
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLE---RGDIPVVIIRPSVIEST 327 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~---~~glp~~I~Rp~~V~g~ 327 (554)
+... .|..+|+..+.+.+.... ..|++++++||+.+..+
T Consensus 143 --------------------------~~~~------------~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~ 184 (276)
T PRK06482 143 --------------------------PGFS------------LYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTN 184 (276)
T ss_pred --------------------------CCCc------------hhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccC
Confidence 1111 234445555555544332 35899999999988332
Q ss_pred ccCCc--cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcc
Q 042694 328 CKEPF--SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPL 405 (554)
Q Consensus 328 ~~~p~--~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~i 405 (554)
..... ...... ...... . ...+.+ .+... .-+.++++++++++.++.... ....||++++ +..
T Consensus 185 ~~~~~~~~~~~~~---~~~~~~--~-~~~~~~-~~~~~-~~~~d~~~~~~a~~~~~~~~~-----~~~~~~~g~~--~~~ 249 (276)
T PRK06482 185 FGAGLDRGAPLDA---YDDTPV--G-DLRRAL-ADGSF-AIPGDPQKMVQAMIASADQTP-----APRRLTLGSD--AYA 249 (276)
T ss_pred CcccccccCCCcc---ccchhh--H-HHHHHH-hhccC-CCCCCHHHHHHHHHHHHcCCC-----CCeEEecChH--HHH
Confidence 21100 000000 000000 0 000000 01111 113578999999999875322 2357999998 667
Q ss_pred cHHHHHHHHHhHhc
Q 042694 406 VFQDLARLLHEHYS 419 (554)
Q Consensus 406 t~~e~~~~~~~~~~ 419 (554)
+..|+++.+.+...
T Consensus 250 ~~~~~~~~~~~~~~ 263 (276)
T PRK06482 250 SIRAALSERLAALE 263 (276)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766665544
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=149.29 Aligned_cols=228 Identities=12% Similarity=0.119 Sum_probs=137.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++||||||||+||++++++|++.+.+| +++.+ ...+.+.+.... ...++..+.+|++++ +.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v---~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~ 70 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAV---AIADLNQDGANAVADEINK-----AGGKAIGVAMDVTNE------DA 70 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeE---EEEeCChHHHHHHHHHHHh-----cCceEEEEECCCCCH------HH
Confidence 357899999999999999999999988754 44332 222233222211 124678899999987 55
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchH----HHHHHHHH-HHcCCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRG----PCRLMEFA-KQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~g----t~~ll~la-~~~~~~k~~v~vST~~v~~ 246 (554)
.+.+.+ .+|+|||+|+.... .+.++...++|+.| ++++++++ +. .+.+++|++||.+...
T Consensus 71 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~~~~iv~~ss~~~~~ 149 (262)
T PRK13394 71 VNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKD-DRGGVVIYMGSVHSHE 149 (262)
T ss_pred HHHHHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-cCCcEEEEEcchhhcC
Confidence 554443 48999999997532 24567888899999 67777777 54 4678999999964432
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEccc
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPS 322 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~ 322 (554)
... ... .|..+|. +++.+++... ..+++++++||+
T Consensus 150 ~~~----------------------------~~~------------~y~~sk~a~~~~~~~la~~~~-~~~i~v~~v~pg 188 (262)
T PRK13394 150 ASP----------------------------LKS------------AYVTAKHGLLGLARVLAKEGA-KHNVRSHVVCPG 188 (262)
T ss_pred CCC----------------------------CCc------------ccHHHHHHHHHHHHHHHHHhh-hcCeEEEEEeeC
Confidence 110 001 1222222 2333333322 248999999999
Q ss_pred eeeecccC-CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 323 VIESTCKE-PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 323 ~V~g~~~~-p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.++++... .++...... . ... ......+........++++++|++++++.++..... ...+.+|++.++
T Consensus 189 ~v~~~~~~~~~~~~~~~~----~--~~~-~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~~~--~~~g~~~~~~~g 258 (262)
T PRK13394 189 FVRTPLVDKQIPEQAKEL----G--ISE-EEVVKKVMLGKTVDGVFTTVEDVAQTVLFLSSFPSA--ALTGQSFVVSHG 258 (262)
T ss_pred cccchhhhhhhHhhhhcc----C--CCh-HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCcccc--CCcCCEEeeCCc
Confidence 99875421 111111000 0 000 000001111223346899999999999988764321 123578888765
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=157.37 Aligned_cols=241 Identities=15% Similarity=0.099 Sum_probs=144.8
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCc-h---hhhccCcEEEEEccCCCCCCCC
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKS-Y---QAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~-~---~~~~~~kv~~v~GDl~~~~lGL 181 (554)
+..+|++||||||||+||++++++|++.|.+| .++..+......+....... . ......++.++.||+.+.
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~V-val~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~---- 150 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGFRV-RAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKP---- 150 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCeE-EEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCH----
Confidence 44678999999999999999999999988754 22222222222222211100 0 000124688999999987
Q ss_pred CHHHHHHHhcCccEEEEcCCCCCch-hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCC
Q 042694 182 EEDLADVIAKEVDVIVNSAANTTFD-ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMG 260 (554)
Q Consensus 182 s~~~~~~l~~~vdiViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~ 260 (554)
+++...+.++|+|||+||..... ..+...+++|+.|+.+++++|++. ++++||++||.+++.... .+.
T Consensus 151 --esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a-gVgRIV~VSSiga~~~g~---p~~----- 219 (576)
T PLN03209 151 --DQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA-KVNHFILVTSLGTNKVGF---PAA----- 219 (576)
T ss_pred --HHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh-CCCEEEEEccchhcccCc---ccc-----
Confidence 77888888999999999875321 235566889999999999999984 789999999986531100 000
Q ss_pred CCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCC
Q 042694 261 DSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNR 340 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~ 340 (554)
. ...... +...++.+|......|++++|+|||.+.++..+ +...
T Consensus 220 -----------------~---~~sk~~----------~~~~KraaE~~L~~sGIrvTIVRPG~L~tp~d~----~~~t-- 263 (576)
T PLN03209 220 -----------------I---LNLFWG----------VLCWKRKAEEALIASGLPYTIVRPGGMERPTDA----YKET-- 263 (576)
T ss_pred -----------------c---hhhHHH----------HHHHHHHHHHHHHHcCCCEEEEECCeecCCccc----cccc--
Confidence 0 000000 112234444444456999999999999764321 1000
Q ss_pred CccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCc-ccHHHHHHH
Q 042694 341 MMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNP-LVFQDLARL 413 (554)
Q Consensus 341 ~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~-it~~e~~~~ 413 (554)
..+... ..+ ....-.+..+|||++++.++..... ..+.+|.+.++...+ ..+.+++..
T Consensus 264 --~~v~~~-~~d---------~~~gr~isreDVA~vVvfLasd~~a---s~~kvvevi~~~~~p~~~~~~~~~~ 322 (576)
T PLN03209 264 --HNLTLS-EED---------TLFGGQVSNLQVAELMACMAKNRRL---SYCKVVEVIAETTAPLTPMEELLAK 322 (576)
T ss_pred --cceeec-ccc---------ccCCCccCHHHHHHHHHHHHcCchh---ccceEEEEEeCCCCCCCCHHHHHHh
Confidence 111100 000 0011246778899999988764332 125789888863221 344554443
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-15 Score=148.41 Aligned_cols=235 Identities=14% Similarity=0.131 Sum_probs=142.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++||||||||+||++++++|++++. +|+++.+.. .+.+.+. ...++..+.+|++++ +...
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~~~~------~~~~ 65 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD---RVVATARDTATLADLAEK--------YGDRLLPLALDVTDR------AAVF 65 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHh--------ccCCeeEEEccCCCH------HHHH
Confidence 57899999999999999999998875 455554321 2222221 234677889999987 5555
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeeceeccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+ .+|+|||+||.... .+.++..+++|+.++..+++.+ ++ .+.+++|++||...+....
T Consensus 66 ~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~vsS~~~~~~~~ 144 (275)
T PRK08263 66 AAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLRE-QRSGHIIQISSIGGISAFP 144 (275)
T ss_pred HHHHHHHHHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCEEEEEcChhhcCCCC
Confidence 4433 68999999997643 2578899999999998888776 33 3567999999976644321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeee
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIES 326 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g 326 (554)
... .|..+|...+.+.+... ...|+++.++|||.+..
T Consensus 145 ----------------------------~~~------------~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t 184 (275)
T PRK08263 145 ----------------------------MSG------------IYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYST 184 (275)
T ss_pred ----------------------------Ccc------------HHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccC
Confidence 001 12223333333332222 23589999999998865
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCccccc-chhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcc
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDV-VPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPL 405 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~-vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~i 405 (554)
+...+.............+.... .+......+ +.++|++++++.++..... ..+.++.+.+ .++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~p~dva~~~~~l~~~~~~----~~~~~~~~~~--~~~ 249 (275)
T PRK08263 185 DWAGTSAKRATPLDAYDTLREEL---------AEQWSERSVDGDPEAAAEALLKLVDAENP----PLRLFLGSGV--LDL 249 (275)
T ss_pred CccccccccCCCchhhhhHHHHH---------HHHHHhccCCCCHHHHHHHHHHHHcCCCC----CeEEEeCchH--HHH
Confidence 43321100000000000100000 000111234 7889999999998765322 2345544444 578
Q ss_pred cHHHHHHHHHhH
Q 042694 406 VFQDLARLLHEH 417 (554)
Q Consensus 406 t~~e~~~~~~~~ 417 (554)
++.++.+.+.++
T Consensus 250 ~~~~~~~~~~~~ 261 (275)
T PRK08263 250 AKADYERRLATW 261 (275)
T ss_pred HHHHHHHHHHHH
Confidence 889988888875
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-15 Score=144.57 Aligned_cols=227 Identities=12% Similarity=0.068 Sum_probs=135.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++||||||||+||++|+++|++.+. +|+++.+. ..+.+..... ....++..+.+|+.++ ++..
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~------~~~~ 66 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGA---NVVVNDLGEAGAEAAAKVAT-----DAGGSVIYLVADVTKE------DEIA 66 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHH-----hcCCceEEEECCCCCH------HHHH
Confidence 46899999999999999999999876 45555432 2222222211 0234688999999987 5443
Q ss_pred HH-------hcCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VI-------AKEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l-------~~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+ ...+|+|||+|+.... .+.++..++.|+.|+..+++.+... .+.+++|++||........+
T Consensus 67 ~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~ 146 (255)
T TIGR01963 67 DMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASPF 146 (255)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCCC
Confidence 33 3468999999987542 2356788899999988888877321 35679999999755432110
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. .|..+|. +++.++.... ..+++++++||+.+++
T Consensus 147 ----------------------------~~------------~y~~sk~a~~~~~~~~~~~~~-~~~i~v~~i~pg~v~~ 185 (255)
T TIGR01963 147 ----------------------------KS------------AYVAAKHGLIGLTKVLALEVA-AHGITVNAICPGYVRT 185 (255)
T ss_pred ----------------------------Cc------------hhHHHHHHHHHHHHHHHHHhh-hcCeEEEEEecCcccc
Confidence 00 1222222 2233322221 2489999999999988
Q ss_pred cccC-CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKE-PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~-p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+... .++.-... ... . ................++++++|+|++++.++..... ...+++|++.++
T Consensus 186 ~~~~~~~~~~~~~----~~~-~--~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~--~~~g~~~~~~~g 251 (255)
T TIGR01963 186 PLVEKQIADQAKT----RGI-P--EEQVIREVMLPGQPTKRFVTVDEVAETALFLASDAAA--GITGQAIVLDGG 251 (255)
T ss_pred HHHHHHHHhhhcc----cCC-C--chHHHHHHHHccCccccCcCHHHHHHHHHHHcCcccc--CccceEEEEcCc
Confidence 6421 11110000 000 0 0000000001122346799999999999988765321 123578999876
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=142.21 Aligned_cols=218 Identities=15% Similarity=0.131 Sum_probs=136.5
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++|+||||||++|++|+++|++++++| +...++. ..+.+...... ...++..+.+|++++ +.+
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~v 71 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGADV--VVHYRSDEEAAEELVEAVEA-----LGRRAQAVQADVTDK------AAL 71 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeE--EEEeCCCHHHHHHHHHHHHh-----cCCceEEEECCcCCH------HHH
Confidence 46799999999999999999999988754 2222221 11222221111 235688999999987 665
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHH----HcCCCceEEEEeeceecccc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAK----QCNKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~~v~vST~~v~~~~ 248 (554)
..+.+ ++|+|||+|+.... .+.+....++|+.++.++++.+. + .+.++|+++||...+...
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~~i~~SS~~~~~~~ 150 (249)
T PRK12825 72 EAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRK-QRGGRIVNISSVAGLPGW 150 (249)
T ss_pred HHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCEEEEECccccCCCC
Confidence 55543 68999999996432 34567889999999999998873 3 357899999998765331
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~ 325 (554)
. .. . .|..+|...+.+++... ...+++++++||+.++
T Consensus 151 ~----------------------------~~------~------~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~ 190 (249)
T PRK12825 151 P----------------------------GR------S------NYAAAKAGLVGLTKALARELAEYGITVNMVAPGDID 190 (249)
T ss_pred C----------------------------Cc------h------HHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCcc
Confidence 1 00 0 12222322333333221 2358999999999999
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
++...+.. .. ... . ..+.. ....+++++|+++++..++.... ....+++|+++++
T Consensus 191 ~~~~~~~~---~~------~~~--~--~~~~~-----~~~~~~~~~dva~~~~~~~~~~~--~~~~g~~~~i~~g 245 (249)
T PRK12825 191 TDMKEATI---EE------ARE--A--KDAET-----PLGRSGTPEDIARAVAFLCSDAS--DYITGQVIEVTGG 245 (249)
T ss_pred CCcccccc---ch------hHH--h--hhccC-----CCCCCcCHHHHHHHHHHHhCccc--cCcCCCEEEeCCC
Confidence 86542211 00 000 0 00000 11238899999999988775432 1234689999886
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=141.33 Aligned_cols=232 Identities=14% Similarity=0.089 Sum_probs=134.4
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++|+||||||++|++++++|++.+. +|+++++. ..+.+...... ...++..+.+|++++ ++.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~~ 68 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA---KVVIADLNDEAAAAAAEALQK-----AGGKAIGVAMDVTDE------EAI 68 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCH------HHH
Confidence 468999999999999999999999876 45554432 11222211110 235788899999988 666
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeeceecccc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v~~~~ 248 (554)
+.+.+ .+|+|||+|+.... .+.++..+++|+.|+..+++.+ ++ .+.++||++||.......
T Consensus 69 ~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~iss~~~~~~~ 147 (258)
T PRK12429 69 NAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKA-QGGGRIINMASVHGLVGS 147 (258)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHh-cCCeEEEEEcchhhccCC
Confidence 55544 68999999986543 2356678889999955555444 44 367899999997554321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
.+ ...+...+... ..+++.++++. ...++.+.++||+.+.++.
T Consensus 148 ~~----------------------------~~~y~~~k~a~--------~~~~~~l~~~~-~~~~i~v~~~~pg~v~~~~ 190 (258)
T PRK12429 148 AG----------------------------KAAYVSAKHGL--------IGLTKVVALEG-ATHGVTVNAICPGYVDTPL 190 (258)
T ss_pred CC----------------------------cchhHHHHHHH--------HHHHHHHHHHh-cccCeEEEEEecCCCcchh
Confidence 10 00011111100 12334444333 2347999999999998754
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+. .......... . . ...............++++++|+++++..++..... ...+++|++.++
T Consensus 191 ~~~~---~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~--~~~g~~~~~~~g 254 (258)
T PRK12429 191 VRKQ---IPDLAKERGI-S-E-EEVLEDVLLPLVPQKRFTTVEEIADYALFLASFAAK--GVTGQAWVVDGG 254 (258)
T ss_pred hhhh---hhhhccccCC-C-h-HHHHHHHHhccCCccccCCHHHHHHHHHHHcCcccc--CccCCeEEeCCC
Confidence 3211 1100000000 0 0 000000001112235799999999998887754321 123578888765
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-14 Score=138.43 Aligned_cols=221 Identities=12% Similarity=0.103 Sum_probs=136.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||++|++++++|+++++ +|+++.+.. .......... ...++.++.+|++++ +.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~------~~ 69 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA---EVIVVDICGDDAAATAELVEA-----AGGKARARQVDVRDR------AA 69 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEECCCCCH------HH
Confidence 3578999999999999999999999876 455554321 1111111110 123588899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
++.+.+ .+|+|||+|+.... .+.+....+.|+.++.++++.+... .+.++|+++||.......
T Consensus 70 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~ 149 (251)
T PRK12826 70 LKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVG 149 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccC
Confidence 666554 68999999988653 3467788999999999999987421 356789999997554110
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~ 325 (554)
. +... .|..+|...+.+.+.+. ...+++++++||+.++
T Consensus 150 ~---------------------------~~~~------------~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~ 190 (251)
T PRK12826 150 Y---------------------------PGLA------------HYAASKAGLVGFTRALALELAARNITVNSVHPGGVD 190 (251)
T ss_pred C---------------------------CCcc------------HHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCC
Confidence 0 0000 12222333333333221 2348999999999998
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
++...+..... . .. .... ..+ ...+++++|+++++..++..... .-.+++|++.++
T Consensus 191 ~~~~~~~~~~~----~-~~---~~~~-~~~--------~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~~~~~g 246 (251)
T PRK12826 191 TPMAGNLGDAQ----W-AE---AIAA-AIP--------LGRLGEPEDIAAAVLFLASDEAR--YITGQTLPVDGG 246 (251)
T ss_pred cchhhhcCchH----H-HH---HHHh-cCC--------CCCCcCHHHHHHHHHHHhCcccc--CcCCcEEEECCC
Confidence 86432211100 0 00 0000 011 01478899999999886643221 124689999876
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=139.77 Aligned_cols=219 Identities=11% Similarity=0.109 Sum_probs=129.1
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++++||||||+||||++++++|++.+. +|+++.+.. .+.+..... ......+..+.+|+++. +.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~------~~ 71 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY---RVAIHYHRSAAEADALAAELN----ALRPGSAAALQADLLDP------DA 71 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCHHHHHHHHHHHH----hhcCCceEEEEcCCCCH------HH
Confidence 457899999999999999999998775 455554321 112221111 11123578899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCC-------chhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceeccccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT-------FDERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~~~~ 249 (554)
...+.+ .+|+|||+|+... ..+.++..+++|+.|+.++++.+... ..-..++++|+. .+.
T Consensus 72 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~--~~~-- 147 (249)
T PRK09135 72 LPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDI--HAE-- 147 (249)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeCh--hhc--
Confidence 665554 5899999999632 12457788999999999999999642 112234444331 111
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc--CCCcEEEEccceeeec
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER--GDIPVVIIRPSVIEST 327 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~--~glp~~I~Rp~~V~g~ 327 (554)
.++ ++.. .|..+|...+.++..+... .+++++++||+.++++
T Consensus 148 -----~~~-------------------~~~~------------~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~ 191 (249)
T PRK09135 148 -----RPL-------------------KGYP------------VYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWP 191 (249)
T ss_pred -----CCC-------------------CCch------------hHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCc
Confidence 000 1111 2334444555554443321 3699999999999987
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...+ .+ . ...........+ ..-+.+++|+++++..++.... ...+.+||++++
T Consensus 192 ~~~~--~~-~------~~~~~~~~~~~~--------~~~~~~~~d~a~~~~~~~~~~~---~~~g~~~~i~~g 244 (249)
T PRK09135 192 EDGN--SF-D------EEARQAILARTP--------LKRIGTPEDIAEAVRFLLADAS---FITGQILAVDGG 244 (249)
T ss_pred cccc--cC-C------HHHHHHHHhcCC--------cCCCcCHHHHHHHHHHHcCccc---cccCcEEEECCC
Confidence 6421 11 0 000000000000 1122358999999866554321 224689999987
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-14 Score=139.09 Aligned_cols=223 Identities=14% Similarity=0.128 Sum_probs=134.1
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|+||||||+||+++++.|++.|..| +.+..+. .+.+.+.... . .....++..+.+|++++ +++..
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G~~v--~i~~~r~-~~~~~~~~~~-~-~~~~~~~~~~~~D~~d~------~~i~~ 73 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDGALV--AIHYGRN-KQAADETIRE-I-ESNGGKAFLIEADLNSI------DGVKK 73 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEE--EEEcCCC-HHHHHHHHHH-H-HhcCCcEEEEEcCcCCH------HHHHH
Confidence 46899999999999999999999988643 2222221 1222111100 0 00124688899999988 66555
Q ss_pred Hhc-------------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceeccc
Q 042694 189 IAK-------------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 189 l~~-------------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~ 247 (554)
+.+ ++|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..++|++||..++..
T Consensus 74 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~ 153 (254)
T PRK12746 74 LVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLG 153 (254)
T ss_pred HHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCC
Confidence 443 58999999986432 2345778889999999999998752 23458999999866543
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEcccee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVI 324 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V 324 (554)
..+ .. .|..+|...+.+.+... ...++++++++||.+
T Consensus 154 ~~~----------------------------~~------------~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~ 193 (254)
T PRK12746 154 FTG----------------------------SI------------AYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYT 193 (254)
T ss_pred CCC----------------------------Cc------------chHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCc
Confidence 210 00 23333433333333222 235899999999998
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.++..... ... +.+.....+ ....-.+++++|+++++..++..... ...+++|++.++
T Consensus 194 ~t~~~~~~---~~~-----~~~~~~~~~--------~~~~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~~i~~~ 251 (254)
T PRK12746 194 KTDINAKL---LDD-----PEIRNFATN--------SSVFGRIGQVEDIADAVAFLASSDSR--WVTGQIIDVSGG 251 (254)
T ss_pred cCcchhhh---ccC-----hhHHHHHHh--------cCCcCCCCCHHHHHHHHHHHcCcccC--CcCCCEEEeCCC
Confidence 76533211 000 000000000 01113567899999998876654321 123578998765
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=135.93 Aligned_cols=235 Identities=13% Similarity=0.067 Sum_probs=140.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+++||||+|+||++++++|++.|.+ |++.+.. ..+.+.+.... ...++.++.+|++++ ++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~---Vv~~~r~~~~l~~~~~~l~~-----~~~~~~~~~~Dv~d~------~~ 69 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGAR---VVLGDVDKPGLRQAVNHLRA-----EGFDVHGVMCDVRHR------EE 69 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHh-----cCCeEEEEeCCCCCH------HH
Confidence 56889999999999999999999998764 4444432 12222211110 123678899999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH----cCCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ----CNKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~----~~~~k~~v~vST~~v~~~ 247 (554)
+..+.+ .+|+|||+|+.... .+.++..+++|+.|+.++++.+.. .+...++|++||...+..
T Consensus 70 v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~ 149 (275)
T PRK05876 70 VTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVP 149 (275)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccC
Confidence 665554 58999999996432 245778899999999999988753 111458999999765432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEccce
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
. +... .|..+|. +++.++.+.. ..|+.+++++|+.
T Consensus 150 ~----------------------------~~~~------------~Y~asK~a~~~~~~~l~~e~~-~~gi~v~~v~Pg~ 188 (275)
T PRK05876 150 N----------------------------AGLG------------AYGVAKYGVVGLAETLAREVT-ADGIGVSVLCPMV 188 (275)
T ss_pred C----------------------------CCCc------------hHHHHHHHHHHHHHHHHHHhh-hcCcEEEEEEeCc
Confidence 1 1111 1222332 4555554443 3489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVN 403 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~ 403 (554)
|.++........ . . ...+........+......+++++++||++++.++... +.|.+.+
T Consensus 189 v~t~~~~~~~~~-~------~--~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ai~~~--------~~~~~~~---- 247 (275)
T PRK05876 189 VETNLVANSERI-R------G--AACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILAN--------RLYVLPH---- 247 (275)
T ss_pred cccccccchhhh-c------C--ccccccccccccccccccccCCCHHHHHHHHHHHHHcC--------CeEEecC----
Confidence 866432110000 0 0 00000000001122223457899999999999887541 3454442
Q ss_pred cccHHHHHHHHHhHh
Q 042694 404 PLVFQDLARLLHEHY 418 (554)
Q Consensus 404 ~it~~e~~~~~~~~~ 418 (554)
+..+.++.+...+..
T Consensus 248 ~~~~~~~~~~~~~~~ 262 (275)
T PRK05876 248 AASRASIRRRFERID 262 (275)
T ss_pred hhhHHHHHHHHHHHH
Confidence 345555555544443
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-14 Score=138.11 Aligned_cols=227 Identities=14% Similarity=0.171 Sum_probs=138.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..+++|+||||||+||.++++.|++.|. +|+++++.. .+.+.+. ...++..+.+|++++ ++
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~---~v~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~~~~------~~ 66 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA---RVVIADIKPARARLAALE--------IGPAAIAVSLDVTRQ------DS 66 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHH--------hCCceEEEEccCCCH------HH
Confidence 4578999999999999999999999876 556655432 2222221 123578899999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc--C--CCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC--N--KLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~--~~k~~v~vST~~v~~~ 247 (554)
.+.+++ .+|++||+|+.... .+.++..+++|+.++..+++++... . .-.++|++||......
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 146 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRG 146 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCC
Confidence 655554 68999999997542 2567888999999999999998642 1 1247999999633211
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEcccee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVI 324 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V 324 (554)
. +... .|..+|...+.+++.+. ...|+++.++|||.|
T Consensus 147 ~----------------------------~~~~------------~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v 186 (257)
T PRK07067 147 E----------------------------ALVS------------HYCATKAAVISYTQSAALALIRHGINVNAIAPGVV 186 (257)
T ss_pred C----------------------------CCCc------------hhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcc
Confidence 0 0000 23334433333333222 135899999999999
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.++..+.......... . ...+.......+......+.+++|++++++.++..... ...+.+|++.++
T Consensus 187 ~t~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~--~~~g~~~~v~gg 253 (257)
T PRK07067 187 DTPMWDQVDALFARYE---N----RPPGEKKRLVGEAVPLGRMGVPDDLTGMALFLASADAD--YIVAQTYNVDGG 253 (257)
T ss_pred cchhhhhhhhhhhhcc---C----CCHHHHHHHHhhcCCCCCccCHHHHHHHHHHHhCcccc--cccCcEEeecCC
Confidence 8753221100000000 0 00000000001111235688999999999888764321 123589999877
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-14 Score=140.78 Aligned_cols=231 Identities=14% Similarity=0.061 Sum_probs=132.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++|+||||||++|+.++++|++++. +|+++.+. ..+.+.+.... .....+++.+.+|++++ ++.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~d~------~~~ 69 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY---LVIATMRNPEKQENLLSQATQ---LNLQQNIKVQQLDVTDQ------NSI 69 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC---EEEEEeCCHHHHHHHHHHHHh---cCCCCceeEEecCCCCH------HHH
Confidence 467899999999999999999999876 45554332 22222221111 00124788999999988 554
Q ss_pred HH---Hh---cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 187 DV---IA---KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 187 ~~---l~---~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
+. +. ..+|+|||+|+.... .+.++...++|+.|+.++++.+... .+..++|++||........
T Consensus 70 ~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~- 148 (280)
T PRK06914 70 HNFQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFP- 148 (280)
T ss_pred HHHHHHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCCC-
Confidence 43 21 368999999986442 2466778899999999988886321 3567899999864432211
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeec
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~ 327 (554)
... .|..+|...+.+++... ...|++++++|||.+.++
T Consensus 149 ---------------------------~~~------------~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~ 189 (280)
T PRK06914 149 ---------------------------GLS------------PYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTN 189 (280)
T ss_pred ---------------------------CCc------------hhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccc
Confidence 000 23333444344433322 234899999999999765
Q ss_pred ccCCccccccC-CCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEG-NRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~-~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+........ .....+. .....+..... ......+++++|+|++++.++..... ...|+++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~dva~~~~~~~~~~~~-----~~~~~~~~~ 254 (280)
T PRK06914 190 IWEVGKQLAENQSETTSPY-KEYMKKIQKHI---NSGSDTFGNPIDVANLIVEIAESKRP-----KLRYPIGKG 254 (280)
T ss_pred hhhccccccccccccccch-HHHHHHHHHHH---hhhhhccCCHHHHHHHHHHHHcCCCC-----CcccccCCc
Confidence 32211100000 0000000 00000000000 01123578899999999998765322 246887765
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=134.43 Aligned_cols=217 Identities=14% Similarity=0.117 Sum_probs=134.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||+++++.|++.+. +|+++++.. ...+.+.... ...++..+.+|++++ +.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~---~vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~ 69 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA---SVVVADINAEGAERVAKQIVA-----DGGTAIAVQVDVSDP------DS 69 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCH------HH
Confidence 3578999999999999999999999875 566665431 1222221110 123567889999987 55
Q ss_pred HHHHhc-------CccEEEEcCCCCC------c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTT------F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~------~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
.+.+.+ .+|+|||+|+... + .+.++..+++|+.|+.++++++... .+.++++++||..++
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 149 (250)
T PRK07774 70 AKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAW 149 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEeccccc
Confidence 554443 6899999999642 1 2456678899999999999998753 134689999997664
Q ss_pred ccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccc
Q 042694 246 GQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPS 322 (554)
Q Consensus 246 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~ 322 (554)
.... .|..+|...+.+++... ...++++.+++||
T Consensus 150 ~~~~-------------------------------------------~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg 186 (250)
T PRK07774 150 LYSN-------------------------------------------FYGLAKVGLNGLTQQLARELGGMNIRVNAIAPG 186 (250)
T ss_pred CCcc-------------------------------------------ccHHHHHHHHHHHHHHHHHhCccCeEEEEEecC
Confidence 3210 23334444444443332 1247999999998
Q ss_pred eeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 323 VIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 323 ~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.+..+.... +.. .........+ ++ ..-+..+++++++++.++..... ...+++|++.++
T Consensus 187 ~~~t~~~~~---~~~-----~~~~~~~~~~-~~--------~~~~~~~~d~a~~~~~~~~~~~~--~~~g~~~~v~~g 245 (250)
T PRK07774 187 PIDTEATRT---VTP-----KEFVADMVKG-IP--------LSRMGTPEDLVGMCLFLLSDEAS--WITGQIFNVDGG 245 (250)
T ss_pred cccCccccc---cCC-----HHHHHHHHhc-CC--------CCCCcCHHHHHHHHHHHhChhhh--CcCCCEEEECCC
Confidence 885533211 100 0000000000 10 01245678999999887754321 123579999887
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=134.60 Aligned_cols=258 Identities=19% Similarity=0.127 Sum_probs=164.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-hhHHH--HHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-ELFKC--LKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~~~~~--l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+|+.||||-||+-|++|.+.||+.|+.|.-++--.+ ....+ |.+. +.....++..+.|||++. ..+
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~-----~~~~~~~l~l~~gDLtD~------~~l 70 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYED-----PHLNDPRLHLHYGDLTDS------SNL 70 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccc-----cccCCceeEEEeccccch------HHH
Confidence 578999999999999999999999987644432211 11112 2111 111334689999999998 666
Q ss_pred HHHhc--CccEEEEcCCC----CCchhhHHHHHHHhchHHHHHHHHHHHcCC-CceEEEEeeceecccccceeeccccCC
Q 042694 187 DVIAK--EVDVIVNSAAN----TTFDERYDIAIDINTRGPCRLMEFAKQCNK-LKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~----v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~-~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
..+.+ ++|-|+|+||. ++|+. +....+++..||.+||++.+.... -.+|...||.-.||... |.|-.+
T Consensus 71 ~r~l~~v~PdEIYNLaAQS~V~vSFe~-P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~----~~pq~E 145 (345)
T COG1089 71 LRILEEVQPDEIYNLAAQSHVGVSFEQ-PEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQ----EIPQKE 145 (345)
T ss_pred HHHHHhcCchhheeccccccccccccC-cceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcc----cCcccc
Confidence 66665 79999999997 34544 445678899999999999998643 35899999999988642 333333
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCC
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGN 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~ 339 (554)
..++.|. .+++..+.|. +|.+ -...+..|+-+| -|+.+- .+.|.-|-.--.
T Consensus 146 ~TPFyPr-------------SPYAvAKlYa--------~W~t----vNYResYgl~Ac---nGILFN-HESP~Rge~FVT 196 (345)
T COG1089 146 TTPFYPR-------------SPYAVAKLYA--------YWIT----VNYRESYGLFAC---NGILFN-HESPLRGETFVT 196 (345)
T ss_pred CCCCCCC-------------CHHHHHHHHH--------Hhee----eehHhhcCceee---cceeec-CCCCCCccceeh
Confidence 3333222 1122222111 1222 222334455554 344443 444543322111
Q ss_pred CCccceeeeeccceee-eeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHh
Q 042694 340 RMMDPIILYYGKGQLT-GFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHY 418 (554)
Q Consensus 340 ~~~~~i~~~~~~G~~~-~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~ 418 (554)
+.....+..+..|... -..++.++.+||-+..|-++++...+... .+..|.++++ ...|.+|++++..+..
T Consensus 197 RKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwlmLQq~------~PddyViATg--~t~sVrefv~~Af~~~ 268 (345)
T COG1089 197 RKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWLMLQQE------EPDDYVIATG--ETHSVREFVELAFEMV 268 (345)
T ss_pred HHHHHHHHHHHccccceEEeccccccccccchHHHHHHHHHHHccC------CCCceEEecC--ceeeHHHHHHHHHHHc
Confidence 1111112223345432 34688999999999999999988876543 2478999999 6779999999999988
Q ss_pred cc
Q 042694 419 SA 420 (554)
Q Consensus 419 ~~ 420 (554)
|.
T Consensus 269 g~ 270 (345)
T COG1089 269 GI 270 (345)
T ss_pred Cc
Confidence 84
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-13 Score=134.01 Aligned_cols=240 Identities=13% Similarity=0.164 Sum_probs=145.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||+++++.|++.|. +|+++.+. ..+.+.+..... ....++..+.+|++++ +.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~~Dl~~~------~~ 72 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA---AVMIVGRNPDKLAAAAEEIEAL---KGAGAVRYEPADVTDE------DQ 72 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHhc---cCCCceEEEEcCCCCH------HH
Confidence 4578999999999999999999999876 45555432 122222211110 0124788899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
...+.+ .+|+|||+|+.... .+.+....++|+.|+..+++.+.+. .+..+++++||..+...
T Consensus 73 ~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~ 152 (276)
T PRK05875 73 VARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNT 152 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCC
Confidence 655554 68999999985421 2346778899999999999877542 12358999999765332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEcccee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVI 324 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V 324 (554)
.. ... .|..+|...+.+++.+. ...+++++++||+.+
T Consensus 153 ~~----------------------------~~~------------~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v 192 (276)
T PRK05875 153 HR----------------------------WFG------------AYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLI 192 (276)
T ss_pred CC----------------------------CCc------------chHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcc
Confidence 10 011 23333444444443332 234799999999988
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCc
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNP 404 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~ 404 (554)
.++.... .... ..... .... ......++.++|+++++..++..... ...+++|+++++ ..
T Consensus 193 ~t~~~~~---~~~~----~~~~~----~~~~-----~~~~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~~~~~g--~~ 252 (276)
T PRK05875 193 RTDLVAP---ITES----PELSA----DYRA-----CTPLPRVGEVEDVANLAMFLLSDAAS--WITGQVINVDGG--HM 252 (276)
T ss_pred CCccccc---cccC----HHHHH----HHHc-----CCCCCCCcCHHHHHHHHHHHcCchhc--CcCCCEEEECCC--ee
Confidence 5532211 0000 00000 0000 00112356799999999988754321 123579999887 33
Q ss_pred c----cHHHHHHHHHhHhc
Q 042694 405 L----VFQDLARLLHEHYS 419 (554)
Q Consensus 405 i----t~~e~~~~~~~~~~ 419 (554)
+ +..|+++.+....+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 253 LRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred ccCCccHHHHHHHHhhHHH
Confidence 3 77777777665544
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=133.46 Aligned_cols=227 Identities=17% Similarity=0.135 Sum_probs=140.3
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcC
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKE 192 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~ 192 (554)
|+||||||.+|+.+++.|++.+..| ++.+ +...-+...+. ....++++.+|+.++ +.+...+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V-~~l~-R~~~~~~~~~l--------~~~g~~vv~~d~~~~------~~l~~al~g 64 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSV-RALV-RDPSSDRAQQL--------QALGAEVVEADYDDP------ESLVAALKG 64 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCE-EEEE-SSSHHHHHHHH--------HHTTTEEEES-TT-H------HHHHHHHTT
T ss_pred CEEECCccHHHHHHHHHHHhCCCCc-EEEE-eccchhhhhhh--------hcccceEeecccCCH------HHHHHHHcC
Confidence 7999999999999999999966654 3332 32211121111 113456789999987 899999999
Q ss_pred ccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccccccc
Q 042694 193 VDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNS 272 (554)
Q Consensus 193 vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~ 272 (554)
+|+||.+-+..+ .. -+....+++++|++. ++++||+.|....+....+ .
T Consensus 65 ~d~v~~~~~~~~-~~--------~~~~~~~li~Aa~~a-gVk~~v~ss~~~~~~~~~~-----~---------------- 113 (233)
T PF05368_consen 65 VDAVFSVTPPSH-PS--------ELEQQKNLIDAAKAA-GVKHFVPSSFGADYDESSG-----S---------------- 113 (233)
T ss_dssp CSEEEEESSCSC-CC--------HHHHHHHHHHHHHHH-T-SEEEESEESSGTTTTTT-----S----------------
T ss_pred CceEEeecCcch-hh--------hhhhhhhHHHhhhcc-ccceEEEEEeccccccccc-----c----------------
Confidence 999999887654 11 123467899999995 7999997554333221100 0
Q ss_pred cCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeeccc
Q 042694 273 RRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKG 352 (554)
Q Consensus 273 ~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G 352 (554)
.|. .. .+-.|...|..++..+++++++|||..+...-.++..+.+. . ...
T Consensus 114 ---~p~-------~~----------~~~~k~~ie~~l~~~~i~~t~i~~g~f~e~~~~~~~~~~~~-~---------~~~ 163 (233)
T PF05368_consen 114 ---EPE-------IP----------HFDQKAEIEEYLRESGIPYTIIRPGFFMENLLPPFAPVVDI-K---------KSK 163 (233)
T ss_dssp ---TTH-------HH----------HHHHHHHHHHHHHHCTSEBEEEEE-EEHHHHHTTTHHTTCS-C---------CTS
T ss_pred ---ccc-------ch----------hhhhhhhhhhhhhhccccceeccccchhhhhhhhhcccccc-c---------ccc
Confidence 000 00 11223344554445699999999999876443332222111 0 001
Q ss_pred eeeeeecCCCccccc-chhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 353 QLTGFLVDPNGILDV-VPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 353 ~~~~~~~~~~~~~d~-vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
..-.++.+.+....+ +..+|+++++..++..+... ..++.+.+++. .+|+.|+++.+.+..|+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~--~~~~~~~~~~~---~~t~~eia~~~s~~~G~~ 228 (233)
T PF05368_consen 164 DVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKH--NNGKTIFLAGE---TLTYNEIAAILSKVLGKK 228 (233)
T ss_dssp SEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGT--TEEEEEEEGGG---EEEHHHHHHHHHHHHTSE
T ss_pred eEEEEccCCCccccccccHHHHHHHHHHHHcChHHh--cCCEEEEeCCC---CCCHHHHHHHHHHHHCCc
Confidence 011233455544555 49999999999888775432 13578888764 789999999999999974
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=136.05 Aligned_cols=223 Identities=13% Similarity=0.114 Sum_probs=133.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++|+||||+|+||++++++|++.|. +|++..+.. +++.+.... . .....++..+.+|++++ +...
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~---~V~~~~r~~-~~~~~~~~~-~-~~~~~~~~~~~~Dl~~~------~~~~ 75 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGF---PVALGARRV-EKCEELVDK-I-RADGGEAVAFPLDVTDP------DSVK 75 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHHH-H-HhcCCeEEEEECCCCCH------HHHH
Confidence 3467999999999999999999998875 344443221 122211100 0 00124678889999987 6665
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ .+|+|||+|+.... .+.++...++|+.|+.++++.+... .+..+||++||...+....
T Consensus 76 ~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~- 154 (274)
T PRK07775 76 SFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRP- 154 (274)
T ss_pred HHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC-
Confidence 5544 68999999997532 2456777899999999999887531 2345799999975544311
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeec
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~ 327 (554)
... .|..+|...+.+++... ...|++++++|||.+...
T Consensus 155 ---------------------------~~~------------~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~ 195 (274)
T PRK07775 155 ---------------------------HMG------------AYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTG 195 (274)
T ss_pred ---------------------------Ccc------------hHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCc
Confidence 000 23334444444444332 124899999999887443
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIAS 399 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~ 399 (554)
...... .. .....+. . .... .......++++||+|++++.++.... ...+||+.-
T Consensus 196 ~~~~~~---~~--~~~~~~~---~--~~~~--~~~~~~~~~~~~dva~a~~~~~~~~~-----~~~~~~~~~ 250 (274)
T PRK07775 196 MGWSLP---AE--VIGPMLE---D--WAKW--GQARHDYFLRASDLARAITFVAETPR-----GAHVVNMEV 250 (274)
T ss_pred ccccCC---hh--hhhHHHH---H--HHHh--cccccccccCHHHHHHHHHHHhcCCC-----CCCeeEEee
Confidence 211000 00 0001000 0 0000 01112468999999999998876421 245788764
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-13 Score=133.86 Aligned_cols=228 Identities=11% Similarity=0.096 Sum_probs=133.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++||||||+|++|++++++|++.+++ |+++.+. ..+.+.+..+ ..++..+.+|++++ +.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~---V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~D~~~~------~~ 72 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGAR---VHVCDVSEAALAATAARLP-------GAKVTATVADVADP------AQ 72 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHh-------cCceEEEEccCCCH------HH
Confidence 56789999999999999999999998764 5555432 2222222221 12678899999987 55
Q ss_pred HHHHh-------cCccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCC-ceEEEEeeceecc
Q 042694 186 ADVIA-------KEVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKL-KLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~-k~~v~vST~~v~~ 246 (554)
+..+. .++|+|||+|+.... .+.++..+++|+.|+..+++.+... .+. +.++++||.+...
T Consensus 73 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~ 152 (264)
T PRK12829 73 VERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL 152 (264)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc
Confidence 55444 378999999997611 2456788999999999999887421 233 5688887754321
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccce
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSV 323 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~ 323 (554)
.. +... .|..+|...+.+++... ...+++++++|||.
T Consensus 153 ~~----------------------------~~~~------------~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~ 192 (264)
T PRK12829 153 GY----------------------------PGRT------------PYAASKWAVVGLVKSLAIELGPLGIRVNAILPGI 192 (264)
T ss_pred CC----------------------------CCCc------------hhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCC
Confidence 11 0000 12222222222222221 23489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
++++............... + ......+..... ....+++++|+++++..++..... ...+++|+++++
T Consensus 193 v~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~-----~~~~~~~~~d~a~~~~~l~~~~~~--~~~g~~~~i~~g 260 (264)
T PRK12829 193 VRGPRMRRVIEARAQQLGI-G-LDEMEQEYLEKI-----SLGRMVEPEDIAATALFLASPAAR--YITGQAISVDGN 260 (264)
T ss_pred cCChHHHHHhhhhhhccCC-C-hhHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHcCcccc--CccCcEEEeCCC
Confidence 9886543211100000000 0 000000011100 123589999999998877643211 123578999886
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=133.02 Aligned_cols=221 Identities=16% Similarity=0.123 Sum_probs=133.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
.|+|+||||||+||++++++|++.+. +|+++++..-+.+.+.... . .....++.++.+|++++ ++...+
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~---~vi~~~r~~~~~~~~~~~~-~-~~~~~~~~~~~~D~~~~------~~~~~~ 70 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF---DLAINDRPDDEELAATQQE-L-RALGVEVIFFPADVADL------SAHEAM 70 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecCchhHHHHHHHH-H-HhcCCceEEEEecCCCH------HHHHHH
Confidence 36899999999999999999999875 4555543211111111000 0 00234788999999987 655554
Q ss_pred hc-------CccEEEEcCCCCCc---------hhhHHHHHHHhchHHHHHHHHHHHc----CC-----CceEEEEeecee
Q 042694 190 AK-------EVDVIVNSAANTTF---------DERYDIAIDINTRGPCRLMEFAKQC----NK-----LKLFVQVSTAYV 244 (554)
Q Consensus 190 ~~-------~vdiViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~~----~~-----~k~~v~vST~~v 244 (554)
.+ .+|+|||+|+.... .+.++..+++|+.|+.++++.+... .+ ..+++++||...
T Consensus 71 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~ 150 (256)
T PRK12745 71 LDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNA 150 (256)
T ss_pred HHHHHHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhh
Confidence 43 68999999986431 2567888999999999998887542 11 467999999765
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEcc
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRP 321 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp 321 (554)
.....+ .. .|..+|...+.+++... ...|++++++||
T Consensus 151 ~~~~~~----------------------------~~------------~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~p 190 (256)
T PRK12745 151 IMVSPN----------------------------RG------------EYCISKAGLSMAAQLFAARLAEEGIGVYEVRP 190 (256)
T ss_pred ccCCCC----------------------------Cc------------ccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 432110 00 23333333333333222 135899999999
Q ss_pred ceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 322 SVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 322 ~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|.+.++...+ +.+.. ... ...+..+ ...+.+++++++++..++.... ....+.+|++.++
T Consensus 191 g~v~t~~~~~---~~~~~---~~~---~~~~~~~--------~~~~~~~~d~a~~i~~l~~~~~--~~~~G~~~~i~gg 250 (256)
T PRK12745 191 GLIKTDMTAP---VTAKY---DAL---IAKGLVP--------MPRWGEPEDVARAVAALASGDL--PYSTGQAIHVDGG 250 (256)
T ss_pred CCCcCccccc---cchhH---Hhh---hhhcCCC--------cCCCcCHHHHHHHHHHHhCCcc--cccCCCEEEECCC
Confidence 9987754321 11110 000 0011111 1346688999998887764321 1123679999876
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=134.65 Aligned_cols=220 Identities=13% Similarity=0.079 Sum_probs=134.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++++||||||+||+++++.|++.+.. +++.....-+.+.+.... . .....++.++.+|++++ +...
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~---v~~~~~~~~~~~~~~~~~-l-~~~~~~~~~~~~D~~~~------~~~~ 72 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAK---VVINYNSSKEAAENLVNE-L-GKEGHDVYAVQADVSKV------EDAN 72 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCE---EEEEcCCcHHHHHHHHHH-H-HhcCCeEEEEECCCCCH------HHHH
Confidence 35789999999999999999999988764 444322111122111100 0 00124688999999987 6655
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ .+|+|||+|+.... .+.+++.+++|+.++..+++.+... .+..++|++||.+......
T Consensus 73 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~- 151 (247)
T PRK12935 73 RLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGF- 151 (247)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCC-
Confidence 5554 48999999997542 2567888999999999999998742 2346899999965432210
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
... .|..+|. +++.++.+.. ..++++++++||.|.+
T Consensus 152 ---------------------------~~~------------~Y~~sK~a~~~~~~~l~~~~~-~~~i~v~~v~pg~v~t 191 (247)
T PRK12935 152 ---------------------------GQT------------NYSAAKAGMLGFTKSLALELA-KTNVTVNAICPGFIDT 191 (247)
T ss_pred ---------------------------CCc------------chHHHHHHHHHHHHHHHHHHH-HcCcEEEEEEeCCCcC
Confidence 000 2223333 2333333222 3489999999999865
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+.....+. ........ .....++.+++|++++++.++.... -..+++||+.++
T Consensus 192 ~~~~~~~~---------~~~~~~~~---------~~~~~~~~~~edva~~~~~~~~~~~---~~~g~~~~i~~g 244 (247)
T PRK12935 192 EMVAEVPE---------EVRQKIVA---------KIPKKRFGQADEIAKGVVYLCRDGA---YITGQQLNINGG 244 (247)
T ss_pred hhhhhccH---------HHHHHHHH---------hCCCCCCcCHHHHHHHHHHHcCccc---CccCCEEEeCCC
Confidence 32211110 00000000 1112467899999999988775421 123589998876
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=133.93 Aligned_cols=222 Identities=13% Similarity=0.102 Sum_probs=133.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.+++|+||||||+||++++++|++.|.+| .+.+.+.. ..+.+.+... ....++..+.+|++++ ++..
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v-~~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~------~~~~ 70 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYDI-AVNYARSRKAAEETAEEIE-----ALGRKALAVKANVGDV------EKIK 70 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEE-EEEcCCCHHHHHHHHHHHH-----hcCCeEEEEEcCCCCH------HHHH
Confidence 46899999999999999999999987654 11112221 1111111111 0234688899999988 6665
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+++ .+|+|||+|+.... .+.+...+.+|+.|+..+++.+... .+.++||++||........
T Consensus 71 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~- 149 (250)
T PRK08063 71 EMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLE- 149 (250)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCC-
Confidence 5544 58999999986432 2345667889999999999888652 2345999999965432210
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeec
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~ 327 (554)
... .|..+|...+.+++... ...|+++.+++|+.+..+
T Consensus 150 ---------------------------~~~------------~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~ 190 (250)
T PRK08063 150 ---------------------------NYT------------TVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTD 190 (250)
T ss_pred ---------------------------Ccc------------HHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCc
Confidence 000 22333444444433222 125899999999999654
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....++++. .+.... .... + ...+++.+|++++++.++..... ...++++++.++
T Consensus 191 ~~~~~~~~~-------~~~~~~-~~~~------~--~~~~~~~~dva~~~~~~~~~~~~--~~~g~~~~~~gg 245 (250)
T PRK08063 191 ALKHFPNRE-------ELLEDA-RAKT------P--AGRMVEPEDVANAVLFLCSPEAD--MIRGQTIIVDGG 245 (250)
T ss_pred hhhhccCch-------HHHHHH-hcCC------C--CCCCcCHHHHHHHHHHHcCchhc--CccCCEEEECCC
Confidence 322222210 000000 0000 1 12468899999999887754321 123578888776
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-14 Score=137.31 Aligned_cols=223 Identities=10% Similarity=0.075 Sum_probs=134.0
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++++|+|||||||||++++++|++.+.+ |+++.+. ..+.+...... ...++..+.+|++++ ++
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~~---V~~~~r~~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~------~~ 70 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGAH---VVVNYRQKAPRANKVVAEIEA-----AGGRASAVGADLTDE------ES 70 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCCE---EEEEeCCchHhHHHHHHHHHh-----cCCceEEEEcCCCCH------HH
Confidence 5689999999999999999999988764 4443221 12222221111 124678899999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecccccceeeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRGKVMEKP 256 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~~i~E~~ 256 (554)
...+.+ .+|+|||+|+.... ...+....++|+.|+.++++.+.+. .+..++|++||........ .+ +
T Consensus 71 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~---~~-~ 146 (248)
T PRK07806 71 VAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT---VK-T 146 (248)
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc---cc-C
Confidence 655543 68999999986322 2235567889999999999999863 2235899999954321100 00 0
Q ss_pred cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeecccCCcc
Q 042694 257 FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIESTCKEPFS 333 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~~~~p~~ 333 (554)
.+... .|..+|...+.+..... ...++++.+++|+.+-++....
T Consensus 147 -------------------~~~~~------------~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~-- 193 (248)
T PRK07806 147 -------------------MPEYE------------PVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTAT-- 193 (248)
T ss_pred -------------------Ccccc------------HHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhh--
Confidence 01000 23334444444443322 2357999999988775532110
Q ss_pred ccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 334 GWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 334 g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... . . .+..... .....++++++|++++++.++..... .+++|+++++
T Consensus 194 -~~~~--~-~-------~~~~~~~---~~~~~~~~~~~dva~~~~~l~~~~~~----~g~~~~i~~~ 242 (248)
T PRK07806 194 -LLNR--L-N-------PGAIEAR---REAAGKLYTVSEFAAEVARAVTAPVP----SGHIEYVGGA 242 (248)
T ss_pred -hhcc--C-C-------HHHHHHH---HhhhcccCCHHHHHHHHHHHhhcccc----CccEEEecCc
Confidence 0000 0 0 0000000 00013689999999999998874322 3689999987
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=131.55 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=131.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|+|||||||||++++++|++.+.+| ++..+.. .+.+...... ......++..+.+|++++ +....
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v--~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~D~~~~------~~~~~ 73 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLV--VVNAKKR-AEEMNETLKM--VKENGGEGIGVLADVSTR------EGCET 73 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCCEE--EEEeCCC-hHHHHHHHHH--HHHcCCeeEEEEeccCCH------HHHHH
Confidence 46899999999999999999999877643 2222221 1111111100 000123567889999987 55544
Q ss_pred Hhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecccccceee
Q 042694 189 IAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRGKVM 253 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~~i~ 253 (554)
+.+ .+|+|||+||.... .+.++...++|+.|+..+++.+.+. ....+||++||...+...
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----- 148 (252)
T PRK06077 74 LAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPA----- 148 (252)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCC-----
Confidence 443 68999999996322 2235678899999999999988753 223579999997654321
Q ss_pred ccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhh--cCCCcEEEEccceeeecccCC
Q 042694 254 EKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLE--RGDIPVVIIRPSVIESTCKEP 331 (554)
Q Consensus 254 E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~--~~glp~~I~Rp~~V~g~~~~p 331 (554)
+... .|..+|...+.+++.... ..++.+.+++||.|.++....
T Consensus 149 -----------------------~~~~------------~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~ 193 (252)
T PRK06077 149 -----------------------YGLS------------IYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGES 193 (252)
T ss_pred -----------------------CCch------------HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHh
Confidence 1111 122223333333333221 127899999999986643221
Q ss_pred ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 332 FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 332 ~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...+... . ...... +......+++++|++++++.++..... .+++|++.++
T Consensus 194 ~~~~~~~---~-------~~~~~~----~~~~~~~~~~~~dva~~~~~~~~~~~~----~g~~~~i~~g 244 (252)
T PRK06077 194 LFKVLGM---S-------EKEFAE----KFTLMGKILDPEEVAEFVAAILKIESI----TGQVFVLDSG 244 (252)
T ss_pred hhhcccc---c-------HHHHHH----hcCcCCCCCCHHHHHHHHHHHhCcccc----CCCeEEecCC
Confidence 1111000 0 000000 011123689999999999998854322 3579999887
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=131.37 Aligned_cols=227 Identities=16% Similarity=0.150 Sum_probs=133.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++||||||||++|++++++|++.+. +|++++... ...+..... ....++..+.+|++++ +..
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~---~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~------~~~ 67 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA---KVAVFDLNREAAEKVAADIR-----AKGGNAQAFACDITDR------DSV 67 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEecCCHHHHHHHHHHHH-----hcCCcEEEEEcCCCCH------HHH
Confidence 578999999999999999999999876 455554321 122222111 0234688899999987 666
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
+.+.+ ++|+|||+|+.... .+.++..+++|+.++.++++.+... .+.++++++||...+....
T Consensus 68 ~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~ 147 (250)
T TIGR03206 68 DTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSS 147 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCC
Confidence 55543 68999999986421 2346778999999999998887521 2457899999986654321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
+ ...+...+... ..+++.++..... .++++.++||+.++++..
T Consensus 148 ~----------------------------~~~Y~~sK~a~--------~~~~~~la~~~~~-~~i~v~~v~pg~~~~~~~ 190 (250)
T TIGR03206 148 G----------------------------EAVYAACKGGL--------VAFSKTMAREHAR-HGITVNVVCPGPTDTALL 190 (250)
T ss_pred C----------------------------CchHHHHHHHH--------HHHHHHHHHHHhH-hCcEEEEEecCcccchhH
Confidence 0 00111111110 0233344333222 489999999999977543
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....++..+ ...+...+.. .. + ...+...+|+|+++..++.... ....++++++.++
T Consensus 191 ~~~~~~~~~---~~~~~~~~~~-~~------~--~~~~~~~~dva~~~~~l~~~~~--~~~~g~~~~~~~g 247 (250)
T TIGR03206 191 DDICGGAEN---PEKLREAFTR-AI------P--LGRLGQPDDLPGAILFFSSDDA--SFITGQVLSVSGG 247 (250)
T ss_pred HhhhhccCC---hHHHHHHHHh-cC------C--ccCCcCHHHHHHHHHHHcCccc--CCCcCcEEEeCCC
Confidence 221111100 0000000000 00 0 0124456899999988765432 1223578888765
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=135.40 Aligned_cols=122 Identities=13% Similarity=0.145 Sum_probs=87.4
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.+++|+||||||+||++++++|++.|. +|+++.+.. +++..... ....++..+.+|++++ +....
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~-~~~~~l~~-----~~~~~~~~~~~D~~d~------~~~~~ 67 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH---RVVGTVRSE-AARADFEA-----LHPDRALARLLDVTDF------DAIDA 67 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC---EEEEEeCCH-HHHHHHHh-----hcCCCeeEEEccCCCH------HHHHH
Confidence 357899999999999999999999876 455554321 22221111 0234678899999987 65555
Q ss_pred Hhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH---cCCCceEEEEeeceec
Q 042694 189 IAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ---CNKLKLFVQVSTAYVN 245 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~---~~~~k~~v~vST~~v~ 245 (554)
+.+ .+|+|||+|+.... .+.++..+++|+.|+.++++.+.. ..+..++|++||....
T Consensus 68 ~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~ 141 (277)
T PRK06180 68 VVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGL 141 (277)
T ss_pred HHHHHHHHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEeccccc
Confidence 544 58999999997543 235677899999999999998643 1245689999997553
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-13 Score=131.92 Aligned_cols=231 Identities=15% Similarity=0.151 Sum_probs=141.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++++||||||+||+.+++.|++.+. +|+++++.. .+.+.+.. ...++..+.+|+.++ +.+.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~---~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~D~~~~------~~~~ 65 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD---RVLALDIDAAALAAFADAL-------GDARFVPVACDLTDA------ASLA 65 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHh-------cCCceEEEEecCCCH------HHHH
Confidence 56899999999999999999998775 455554321 11122111 124688899999988 6665
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~~~ 250 (554)
.+++ ++|+|||+|+.... .+.+.....+|+.|+..+++.+.. + .+..+++++||....... +
T Consensus 66 ~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-~ 144 (257)
T PRK07074 66 AALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAAL-G 144 (257)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCC-C
Confidence 5444 48999999987532 234566788999999999988843 1 245689999996432210 0
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeec
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~ 327 (554)
. + .|..+|...+.+++... ...|+++.++|||.+.++
T Consensus 145 ----------~---------------~---------------~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~ 184 (257)
T PRK07074 145 ----------H---------------P---------------AYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQ 184 (257)
T ss_pred ----------C---------------c---------------ccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcc
Confidence 0 0 22223333333333222 124799999999998664
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccH
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVF 407 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~ 407 (554)
.... .......+. ..+. ......++++++|++++++.++..... ...+.++++.++ .....
T Consensus 185 ~~~~------~~~~~~~~~---~~~~------~~~~~~~~~~~~d~a~~~~~l~~~~~~--~~~g~~~~~~~g--~~~~~ 245 (257)
T PRK07074 185 AWEA------RVAANPQVF---EELK------KWYPLQDFATPDDVANAVLFLASPAAR--AITGVCLPVDGG--LTAGN 245 (257)
T ss_pred hhhc------ccccChHHH---HHHH------hcCCCCCCCCHHHHHHHHHHHcCchhc--CcCCcEEEeCCC--cCcCC
Confidence 3210 000000000 0000 011135789999999999998754221 123578888777 56678
Q ss_pred HHHHHHHHh
Q 042694 408 QDLARLLHE 416 (554)
Q Consensus 408 ~e~~~~~~~ 416 (554)
+|+.+.+.+
T Consensus 246 ~~~~~~~~~ 254 (257)
T PRK07074 246 REMARTLTL 254 (257)
T ss_pred hhhhhhhcc
Confidence 888887654
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=128.66 Aligned_cols=224 Identities=13% Similarity=0.133 Sum_probs=132.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++||||+|++|++|+++|++.|. +|+++.+.. .....+... ...++..+++|++++ +.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~D~~~~------~~ 67 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA---RVVVADRDAEAAERVAAAIA------AGGRAFARQGDVGSA------EA 67 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC---eEEEecCCHHHHHHHHHHHh------cCCeEEEEEcCCCCH------HH
Confidence 3578999999999999999999999876 455543321 111111110 134688999999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|+|||+|+.... .+.++..+++|+.|+.++.+.+... .+.++++++||.......
T Consensus 68 ~~~~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~ 147 (252)
T PRK06138 68 VEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGG 147 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCC
Confidence 655543 68999999997532 2456778999999998777665321 356799999997553321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~ 325 (554)
.+ .. .|..+|...+.+++... ...+++++++||+.+.
T Consensus 148 ~~----------------------------~~------------~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~ 187 (252)
T PRK06138 148 RG----------------------------RA------------AYVASKGAIASLTRAMALDHATDGIRVNAVAPGTID 187 (252)
T ss_pred CC----------------------------cc------------HHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCcc
Confidence 10 00 12222322233333222 1248999999999997
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
++.......+.... ..+.....+ ......++++++++++++.++..... ...+.++.+.++
T Consensus 188 t~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~d~a~~~~~l~~~~~~--~~~g~~~~~~~g 248 (252)
T PRK06138 188 TPYFRRIFARHADP----EALREALRA--------RHPMNRFGTAEEVAQAALFLASDESS--FATGTTLVVDGG 248 (252)
T ss_pred CcchhhhhccccCh----HHHHHHHHh--------cCCCCCCcCHHHHHHHHHHHcCchhc--CccCCEEEECCC
Confidence 76433221111100 000000000 00112367899999999988755332 123466766554
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=123.99 Aligned_cols=244 Identities=10% Similarity=0.050 Sum_probs=161.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+++|||||+||.+|++|.+.+..++++=.+.+... --..||++. ++.+.+
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~------------------------skd~DLt~~------a~t~~l 50 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIG------------------------SKDADLTNL------ADTRAL 50 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEec------------------------cccccccch------HHHHHH
Confidence 36899999999999999999988765321111111 123577766 777777
Q ss_pred hc--CccEEEEcCCCCCc----hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccc-ceeeccccCCCCC
Q 042694 190 AK--EVDVIVNSAANTTF----DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRR-GKVMEKPFCMGDS 262 (554)
Q Consensus 190 ~~--~vdiViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~-~~i~E~~~~~~~~ 262 (554)
++ ++..|||+||.|.- ....-.+++.|+.--.|++..|.+. +++.++++-|..++++.. -.|+|...-.+
T Consensus 51 F~~ekPthVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~-gv~K~vsclStCIfPdkt~yPIdEtmvh~g-- 127 (315)
T KOG1431|consen 51 FESEKPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEH-GVKKVVSCLSTCIFPDKTSYPIDETMVHNG-- 127 (315)
T ss_pred HhccCCceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHh-chhhhhhhcceeecCCCCCCCCCHHHhccC--
Confidence 75 78999999998752 2234578999999999999999995 899999998888888743 12333221110
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhh----hhhcCCCcEEEEccceeeecccCCccccccC
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGL----GLERGDIPVVIIRPSVIESTCKEPFSGWMEG 338 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~----~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~ 338 (554)
| +. .-..-|.+||+++.. +..+.|-..+.+-|.+|||+.++.-|.-.
T Consensus 128 ----------p----ph-------------psN~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~s-- 178 (315)
T KOG1431|consen 128 ----------P----PH-------------PSNFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENS-- 178 (315)
T ss_pred ----------C----CC-------------CCchHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccc--
Confidence 0 00 001115667777652 23457889999999999998774322110
Q ss_pred CCCccceeee----eccce-eeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHH
Q 042694 339 NRMMDPIILY----YGKGQ-LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARL 413 (554)
Q Consensus 339 ~~~~~~i~~~----~~~G~-~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~ 413 (554)
...-+++.. -..|. .-...+.+.-.+.++++||+|++++.....-. ..+-.+++.+....+|++|.++.
T Consensus 179 -HVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr~Y~-----~vEpiils~ge~~EVtI~e~aea 252 (315)
T KOG1431|consen 179 -HVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLREYE-----GVEPIILSVGESDEVTIREAAEA 252 (315)
T ss_pred -cchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHHhhc-----CccceEeccCccceeEHHHHHHH
Confidence 011111110 11222 22344666667899999999999998775422 23456777775579999999999
Q ss_pred HHhHhccC
Q 042694 414 LHEHYSAS 421 (554)
Q Consensus 414 ~~~~~~~~ 421 (554)
+.+..+-.
T Consensus 253 V~ea~~F~ 260 (315)
T KOG1431|consen 253 VVEAVDFT 260 (315)
T ss_pred HHHHhCCC
Confidence 99987743
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-13 Score=129.83 Aligned_cols=217 Identities=16% Similarity=0.154 Sum_probs=132.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.+++|+||||||++|+++++.|++++.+ |+.+.+. ..+.+..... ....++..+.+|+.++ +..
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~---v~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~------~~~ 69 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAK---VVIYDSNEEAAEALAAELR-----AAGGEARVLVFDVSDE------AAV 69 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCChhHHHHHHHHHH-----hcCCceEEEEccCCCH------HHH
Confidence 4579999999999999999999998764 4444332 1122221111 1234688899999987 555
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
..+.+ .+|+|||+||.... .+.++..++.|+.++.++++.+... .+.++|+++||........
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~ 149 (246)
T PRK05653 70 RALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNP 149 (246)
T ss_pred HHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCCC
Confidence 54443 57999999987543 2346778999999999999888421 3567999999874422110
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEccceee
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
... .|..+|. +++.+++.. ...+++++++||+.+.
T Consensus 150 ----------------------------~~~------------~y~~sk~~~~~~~~~l~~~~-~~~~i~~~~i~pg~~~ 188 (246)
T PRK05653 150 ----------------------------GQT------------NYSAAKAGVIGFTKALALEL-ASRGITVNAVAPGFID 188 (246)
T ss_pred ----------------------------CCc------------HhHhHHHHHHHHHHHHHHHH-hhcCeEEEEEEeCCcC
Confidence 000 1222222 233333322 2358999999999998
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
++...++.... ..+..... ....++.++++++++..++..... ...+++|+++++
T Consensus 189 ~~~~~~~~~~~-------------~~~~~~~~-----~~~~~~~~~dva~~~~~~~~~~~~--~~~g~~~~~~gg 243 (246)
T PRK05653 189 TDMTEGLPEEV-------------KAEILKEI-----PLGRLGQPEEVANAVAFLASDAAS--YITGQVIPVNGG 243 (246)
T ss_pred CcchhhhhHHH-------------HHHHHhcC-----CCCCCcCHHHHHHHHHHHcCchhc--CccCCEEEeCCC
Confidence 75432111000 00010000 013467789999998887643221 224678998876
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.7e-13 Score=130.57 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=84.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+++++++||||+|+||++++++|++.|.+ |+++++. ....+.+.... ...++.++.+|++++ ++.
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~---v~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~ 71 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGAR---VVLVDRSELVHEVAAELRA-----AGGEALALTADLETY------AGA 71 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCchHHHHHHHHHHh-----cCCeEEEEEEeCCCH------HHH
Confidence 56889999999999999999999998764 4444432 11222221111 234678899999987 555
Q ss_pred HHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceec
Q 042694 187 DVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVN 245 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~ 245 (554)
..+.+ .+|++||+|+... + .+.++..+++|+.|+..+++.+.. + .+..++|++||...+
T Consensus 72 ~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~ 148 (260)
T PRK12823 72 QAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATR 148 (260)
T ss_pred HHHHHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCcccc
Confidence 44443 6899999998431 1 235677789999988766655542 1 245689999997654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=129.06 Aligned_cols=220 Identities=10% Similarity=0.115 Sum_probs=134.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|++|+.++++|++.|. +|++.++.. .+.+.+.... ...++..+.+|++++ ++
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~i~~-----~~~~~~~~~~D~~~~------~~ 73 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA---EVILNGRDPAKLAAAAESLKG-----QGLSAHALAFDVTDH------DA 73 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHh-----cCceEEEEEccCCCH------HH
Confidence 4689999999999999999999999876 455554321 1111111110 123578899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ .+|+|||+||.... .+.++..+.+|+.|+..+++.+.+. .+..++|++||.......
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~ 153 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALAR 153 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCC
Confidence 666654 48999999997532 2456788899999999999988642 245689999986442211
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEcccee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
+... .|..+|. +++.++.... ..|+++.++||+.+
T Consensus 154 ----------------------------~~~~------------~y~~sK~a~~~~~~~~a~e~~-~~gi~v~~i~pg~~ 192 (255)
T PRK07523 154 ----------------------------PGIA------------PYTATKGAVGNLTKGMATDWA-KHGLQCNAIAPGYF 192 (255)
T ss_pred ----------------------------CCCc------------cHHHHHHHHHHHHHHHHHHhh-HhCeEEEEEEECcc
Confidence 0001 1222222 2333333222 35899999999998
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.++..... ... ......+.. .. ....+..++|+|++++.++..... .-.+.++++.++
T Consensus 193 ~t~~~~~~---~~~----~~~~~~~~~-~~--------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~i~~~gg 250 (255)
T PRK07523 193 DTPLNAAL---VAD----PEFSAWLEK-RT--------PAGRWGKVEELVGACVFLASDASS--FVNGHVLYVDGG 250 (255)
T ss_pred cCchhhhh---ccC----HHHHHHHHh-cC--------CCCCCcCHHHHHHHHHHHcCchhc--CccCcEEEECCC
Confidence 77543211 000 000000000 00 012356789999998887754221 123578888776
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=125.71 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=89.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc------hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
.++++|+||||||+||++++++|++.+.+ +++++. ...+.+...... ...++..+.+|++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~---v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~---- 71 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD---VIVLDIHPMRGRAEADAVAAGIEA-----AGGKALGLAFDVRDF---- 71 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe---EEEEcCcccccHHHHHHHHHHHHh-----cCCcEEEEEccCCCH----
Confidence 35689999999999999999999998865 343321 111222222111 234788999999987
Q ss_pred CHHHHHHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHH-Hc---CCCceEEEEeece
Q 042694 182 EEDLADVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAK-QC---NKLKLFVQVSTAY 243 (554)
Q Consensus 182 s~~~~~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~-~~---~~~k~~v~vST~~ 243 (554)
+..+.+. .++|+|||+|+.... .+.++...++|+.|+.++++++. .+ .+.+++|++||..
T Consensus 72 --~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~ 149 (249)
T PRK12827 72 --AATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVA 149 (249)
T ss_pred --HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCch
Confidence 6555554 368999999997541 24567889999999999999997 21 3557899999976
Q ss_pred ecc
Q 042694 244 VNG 246 (554)
Q Consensus 244 v~~ 246 (554)
...
T Consensus 150 ~~~ 152 (249)
T PRK12827 150 GVR 152 (249)
T ss_pred hcC
Confidence 543
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-12 Score=130.40 Aligned_cols=222 Identities=14% Similarity=0.119 Sum_probs=134.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+||||||+|+||++++++|++.|.+| .+...+.. ..+.+.+.... ...++..+.+|++++ +.
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V-~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~ 120 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADI-ALNYLPEEEQDAAEVVQLIQA-----EGRKAVALPGDLKDE------AF 120 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEE-EEEeCCcchHHHHHHHHHHHH-----cCCeEEEEecCCCCH------HH
Confidence 567999999999999999999999988754 11112111 11112211110 234678899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceeccccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+++ ++|+|||+|+... + .+.++..+++|+.|+..+++.+... ..-.++|++||...+....
T Consensus 121 v~~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~ 200 (300)
T PRK06128 121 CRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSP 200 (300)
T ss_pred HHHHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCC
Confidence 555543 6899999999632 1 3468899999999999999999752 2235899999987654321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCch----HHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDG----EVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k----~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
+ .. .|..+| .+++.++.+.. ..|+++.+++||.|.
T Consensus 201 ~----------------------------~~------------~Y~asK~a~~~~~~~la~el~-~~gI~v~~v~PG~i~ 239 (300)
T PRK06128 201 T----------------------------LL------------DYASTKAAIVAFTKALAKQVA-EKGIRVNAVAPGPVW 239 (300)
T ss_pred C----------------------------ch------------hHHHHHHHHHHHHHHHHHHhh-hcCcEEEEEEECcCc
Confidence 0 00 122222 23334443332 248999999999997
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
++..... ... ......++.+ . + ...+...++++++++.++..... --.+++|++.++
T Consensus 240 t~~~~~~--~~~-----~~~~~~~~~~-~------p--~~r~~~p~dva~~~~~l~s~~~~--~~~G~~~~v~gg 296 (300)
T PRK06128 240 TPLQPSG--GQP-----PEKIPDFGSE-T------P--MKRPGQPVEMAPLYVLLASQESS--YVTGEVFGVTGG 296 (300)
T ss_pred CCCcccC--CCC-----HHHHHHHhcC-C------C--CCCCcCHHHHHHHHHHHhCcccc--CccCcEEeeCCC
Confidence 7543110 000 0000000100 0 0 12355778999998877654221 123578998876
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-12 Score=124.39 Aligned_cols=210 Identities=13% Similarity=0.135 Sum_probs=130.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++||||||||++|+++++.|++.+. +|+++.+.. +...+... +....++..+.+|+.+. ++..
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~---~v~~~~r~~-~~~~~~~~----~~~~~~~~~~~~D~~~~------~~~~ 70 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGA---RVALIGRGA-APLSQTLP----GVPADALRIGGIDLVDP------QAAR 70 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCC---eEEEEeCCh-HhHHHHHH----HHhhcCceEEEeecCCH------HHHH
Confidence 4578999999999999999999999875 456554321 11111100 00122456788999887 5555
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ ++|+|||+|+.... .+.+++.+.+|+.++.++++.+.+. .+.+++|++||...+....
T Consensus 71 ~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~- 149 (239)
T PRK12828 71 RAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGP- 149 (239)
T ss_pred HHHHHHHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCCC-
Confidence 5443 68999999986432 3456778999999999999887531 3578999999986644311
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
... .|..+|. +++.++... ...++++.++|||.+++
T Consensus 150 ---------------------------~~~------------~y~~sk~a~~~~~~~~a~~~-~~~~i~~~~i~pg~v~~ 189 (239)
T PRK12828 150 ---------------------------GMG------------AYAAAKAGVARLTEALAAEL-LDRGITVNAVLPSIIDT 189 (239)
T ss_pred ---------------------------Ccc------------hhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccC
Confidence 000 1111222 222332222 23589999999999987
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+.... . . + ......+++++|+++++..++..... .-.++.+++.++
T Consensus 190 ~~~~~------~--~--~----------------~~~~~~~~~~~dva~~~~~~l~~~~~--~~~g~~~~~~g~ 235 (239)
T PRK12828 190 PPNRA------D--M--P----------------DADFSRWVTPEQIAAVIAFLLSDEAQ--AITGASIPVDGG 235 (239)
T ss_pred cchhh------c--C--C----------------chhhhcCCCHHHHHHHHHHHhCcccc--cccceEEEecCC
Confidence 52210 0 0 0 00012378999999998887754321 123577887765
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.9e-13 Score=129.70 Aligned_cols=126 Identities=20% Similarity=0.284 Sum_probs=84.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||||+||++++++|++.+.+ |+++.+ +..+.+.+.... ......+.++.+|++++ ++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~---v~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~~~Dl~d~------~~ 69 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI---VIAADIDKEALNELLESLGK---EFKSKKLSLVELDITDQ------ES 69 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEecChHHHHHHHHHHHh---hcCCCceeEEEecCCCH------HH
Confidence 46789999999999999999999998764 444332 222222222110 00123566789999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCC------c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTT------F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~------~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
+..+.+ .+|+|||+|+... + .+.+...+++|+.++..+++.+... .+..++|++||.+..
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~ 149 (256)
T PRK09186 70 LEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGV 149 (256)
T ss_pred HHHHHHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhh
Confidence 666554 3899999997431 1 2356778899998887777665431 245699999997654
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-13 Score=130.55 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=88.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..+++||||||||+||++++++|++.|. +|+++++.. .+.+.+.... ...++..+.+|++++ +.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~ 68 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA---DVVLAARTAERLDEVAAEIDD-----LGRRALAVPTDITDE------DQ 68 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHH-----hCCceEEEecCCCCH------HH
Confidence 4678999999999999999999999886 455554321 1222221110 134678999999987 66
Q ss_pred HHHHh-------cCccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeecee
Q 042694 186 ADVIA-------KEVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v 244 (554)
.+.+. .++|+|||+|+.... .+.++..+++|+.|+..+++.+... +...++|++||...
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~ 144 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVL 144 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhh
Confidence 55444 368999999986321 3567888999999999999998752 12258999999755
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.6e-13 Score=132.24 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=88.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++||||||+|+||++++++|++.|. +|++++.. ..+.+.+.... ...++..+.+|++++ ++
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d~------~~ 69 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM---KLVLADVQQDALDRAVAELRA-----QGAEVLGVRTDVSDA------AQ 69 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHHHHh-----cCCeEEEEECCCCCH------HH
Confidence 3578999999999999999999999876 45555432 22222222111 134688899999987 67
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHH----HcCC-----CceEEEEeec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAK----QCNK-----LKLFVQVSTA 242 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~-----~k~~v~vST~ 242 (554)
++.+.+ .+|+|||+||.... .+.++...++|+.|+.++++++. +... ..++|++||.
T Consensus 70 ~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~ 149 (287)
T PRK06194 70 VEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASM 149 (287)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCCh
Confidence 766655 58999999998543 24567789999999999877753 2111 1489999997
Q ss_pred eecc
Q 042694 243 YVNG 246 (554)
Q Consensus 243 ~v~~ 246 (554)
+.+.
T Consensus 150 ~~~~ 153 (287)
T PRK06194 150 AGLL 153 (287)
T ss_pred hhcc
Confidence 6654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-12 Score=126.26 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=89.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++++|+||||||++|++++++|++.+.+ |+.+.+.. .+.+..... ...++.++.+|++++ +.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~---V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~D~~~~------~~ 67 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR---VVVTDRNEEAAERVAAEIL------AGGRAIAVAADVSDE------AD 67 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHh------cCCeEEEEECCCCCH------HH
Confidence 45789999999999999999999988764 55554322 111111111 024678899999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+.++||++||...+..
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~ 147 (251)
T PRK07231 68 VEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRP 147 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCC
Confidence 766654 57999999986321 2457788999999988888777532 35678999999866543
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-12 Score=124.82 Aligned_cols=122 Identities=21% Similarity=0.287 Sum_probs=86.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++++|+||||||++|+++++.|++.|.+ |+++ ++.. ...+..... ....++..+.+|++++ +.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~---v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dl~~~------~~ 69 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGAN---VVINYASSEAGAEALVAEIG-----ALGGKALAVQGDVSDA------ES 69 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCchhHHHHHHHHHH-----hcCCceEEEEcCCCCH------HH
Confidence 5689999999999999999999998764 4333 3221 112211111 0235788999999988 65
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
+..+.+ ++|+|||+|+.... .+.++....+|+.++.++++.+... .+.++|+++||...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~ 145 (248)
T PRK05557 70 VERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVG 145 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEccccc
Confidence 555443 68999999987432 2356788899999999999888652 24568999998743
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-12 Score=124.99 Aligned_cols=123 Identities=16% Similarity=0.194 Sum_probs=86.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+||||||++|++++++|++.+. +|+.+++. ..+.+.+.... ...++..+.+|++++ +.+.
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~---~Vi~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~------~~~~ 66 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA---QLVLAARNETRLASLAQELAD-----HGGEALVVPTDVSDA------EACE 66 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HHHH
Confidence 46899999999999999999998776 44444432 11222221111 234788899999987 6555
Q ss_pred HHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceecc
Q 042694 188 VIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~ 246 (554)
.+.+ ++|+|||+|+.... .+.+.+..++|+.|+.++++.+... .+..++|++||...+.
T Consensus 67 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~ 142 (263)
T PRK06181 67 RLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT 142 (263)
T ss_pred HHHHHHHHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC
Confidence 5543 68999999987542 1236677999999999999998531 2346899999976543
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=127.77 Aligned_cols=218 Identities=15% Similarity=0.060 Sum_probs=128.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++++||||||+||++++++|++.+..| +++. +++ ....+..... ....++..+.+|++++ +.+.
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~v--v~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~Dl~~~------~~~~ 68 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAV--CLNYLRNRDAAEAVVQAIR-----RQGGEALAVAADVADE------ADVL 68 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeE--EEecCCCHHHHHHHHHHHH-----hCCCcEEEEEeccCCH------HHHH
Confidence 4689999999999999999999987643 2222 221 1111111111 0124677899999987 6665
Q ss_pred HHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHcCC------CceEEEEeeceecc
Q 042694 188 VIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQCNK------LKLFVQVSTAYVNG 246 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~~~------~k~~v~vST~~v~~ 246 (554)
.+.+ .+|+|||+|+.... .+.+...+++|+.|+..+++.+...-. -.+++++||.....
T Consensus 69 ~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 148 (248)
T PRK06123 69 RLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARL 148 (248)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcC
Confidence 5554 68999999987531 235678899999999999888764211 23689999975432
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccce
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSV 323 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~ 323 (554)
...+ .. . .|..+|...+.++..+. ...|+++.++||+.
T Consensus 149 ~~~~--------------------------~~-~------------~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~ 189 (248)
T PRK06123 149 GSPG--------------------------EY-I------------DYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGV 189 (248)
T ss_pred CCCC--------------------------Cc-c------------chHHHHHHHHHHHHHHHHHhcccCeEEEEEecCc
Confidence 2110 00 0 13333443344333222 23589999999999
Q ss_pred eeecccCC--ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEP--FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p--~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|+++.... .+.+... . .+..+ - .-...++|++++++.++..... ...+.+|++.++
T Consensus 190 v~~~~~~~~~~~~~~~~----------~-~~~~p------~--~~~~~~~d~a~~~~~l~~~~~~--~~~g~~~~~~gg 247 (248)
T PRK06123 190 IYTEIHASGGEPGRVDR----------V-KAGIP------M--GRGGTAEEVARAILWLLSDEAS--YTTGTFIDVSGG 247 (248)
T ss_pred ccCchhhccCCHHHHHH----------H-HhcCC------C--CCCcCHHHHHHHHHHHhCcccc--CccCCEEeecCC
Confidence 98864321 0111100 0 00111 0 0123579999999887654221 123578888654
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-12 Score=122.85 Aligned_cols=123 Identities=15% Similarity=0.206 Sum_probs=87.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++|+||||||+||++++++|++.+. +|+++.+.. .+.+..... ....++.++.+|++++ +..
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~---~Vi~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~------~~~ 71 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV---NVGLLARTEENLKAVAEEVE-----AYGVKVVIATADVSDY------EEV 71 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHH-----HhCCeEEEEECCCCCH------HHH
Confidence 568999999999999999999998775 455444321 111111111 1234788999999987 665
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
..+.+ .+|+|||+|+.... .+.+++.+++|+.|+.++++.+... .+.+++|++||....
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~ 147 (239)
T PRK07666 72 TAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQ 147 (239)
T ss_pred HHHHHHHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhc
Confidence 55554 79999999986432 2456788999999999999887631 245789999997653
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=131.82 Aligned_cols=124 Identities=14% Similarity=0.092 Sum_probs=88.0
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++|+||||||+||.++++.|++.|. +|+++.+ ...+.+.+.... ...++..+.+|++++ +..
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~------~~v 70 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW---HVIMACRNLKKAEAAAQELGI-----PPDSYTIIHIDLGDL------DSV 70 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhc-----cCCceEEEEecCCCH------HHH
Confidence 578999999999999999999999875 4555433 222222222211 124688899999987 655
Q ss_pred HHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CC--CceEEEEeeceecc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NK--LKLFVQVSTAYVNG 246 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~--~k~~v~vST~~v~~ 246 (554)
+.+.+ .+|+|||+||.... .+.++..+++|+.|+..+++++... .+ ..++|++||...+.
T Consensus 71 ~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~ 150 (322)
T PRK07453 71 RRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANP 150 (322)
T ss_pred HHHHHHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCc
Confidence 55543 49999999996321 2467888999999999998887642 11 24899999986644
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-12 Score=124.46 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=82.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.+|++|||||+|+||++++++|++.+.+ ++++.. ...+.+.+.... ...++..+.+|++++ +.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~---v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~------~~ 73 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFD---VAVHYNRSRDEAEALAAEIRA-----LGRRAVALQADLADE------AE 73 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCCHHHHHHHHHHHHh-----cCCeEEEEEcCCCCH------HH
Confidence 5789999999999999999999987753 443322 112222222110 134688899999987 55
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcC---CCceEEEEeec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCN---KLKLFVQVSTA 242 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~---~~k~~v~vST~ 242 (554)
...+++ .+|+|||+|+.... .+.++..+++|+.|+..+++.+.... .-..++++||.
T Consensus 74 ~~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~ 147 (258)
T PRK09134 74 VRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQ 147 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECch
Confidence 555443 58999999986432 24678889999999999999886521 22467777664
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.1e-12 Score=121.81 Aligned_cols=116 Identities=13% Similarity=0.211 Sum_probs=82.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+|+||||||+||++++++|++. + +|+++.+.. .+.+.+. ...+.++.+|++++ +.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~---~V~~~~r~~~~~~~~~~~---------~~~~~~~~~D~~~~------~~~~ 63 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H---TLLLGGRPAERLDELAAE---------LPGATPFPVDLTDP------EAIA 63 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C---CEEEEeCCHHHHHHHHHH---------hccceEEecCCCCH------HHHH
Confidence 578999999999999999999986 4 466665432 1112111 13577899999987 7777
Q ss_pred HHhc---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHH----HHHHHHHcCCCceEEEEeeceecc
Q 042694 188 VIAK---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCR----LMEFAKQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 188 ~l~~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~----ll~la~~~~~~k~~v~vST~~v~~ 246 (554)
.+.+ ++|+|||+|+.... .+.+....+.|+.++.+ +++.+++ +.++++++||...+.
T Consensus 64 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~~~v~~ss~~~~~ 134 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRA--AHGHVVFINSGAGLR 134 (227)
T ss_pred HHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--CCCeEEEEcchHhcC
Confidence 7765 59999999987532 13466778999999544 4444443 346899999876643
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=119.69 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=86.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.+++|+||||||++|+++++.|++.+. +|+++.+.. ...+.+.... . .++..+.+|+.++ +++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~---~V~~~~r~~~~~~~~~~~l~~-----~-~~~~~~~~D~~~~------~~~ 69 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY---KVAITARDQKELEEAAAELNN-----K-GNVLGLAADVRDE------ADV 69 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEeeCCHHHHHHHHHHHhc-----c-CcEEEEEccCCCH------HHH
Confidence 468999999999999999999998765 455554321 1122222111 1 5788999999987 555
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeecee
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYV 244 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v 244 (554)
..+.+ .+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+..++|++||...
T Consensus 70 ~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~ 143 (237)
T PRK07326 70 QRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAG 143 (237)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhh
Confidence 54443 79999999987532 3456788999999999998887642 24467999998754
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-12 Score=123.22 Aligned_cols=121 Identities=17% Similarity=0.237 Sum_probs=86.4
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++++||||||+||+++++.|++.+. .|++.++. .+++.+.... ...++.++.+|+++. +.++.
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~---~v~~~~~~-~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~~~ 69 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA---IVGLHGTR-VEKLEALAAE-----LGERVKIFPANLSDR------DEVKA 69 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCC-HHHHHHHHHH-----hCCceEEEEccCCCH------HHHHH
Confidence 578999999999999999999999875 44444332 1222221110 124678899999987 66555
Q ss_pred Hh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 189 IA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
+. .++|+|||+|+.... .+.++..+++|+.|+..+++.+... .+..+||++||...
T Consensus 70 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~ 142 (245)
T PRK12936 70 LGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVG 142 (245)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHh
Confidence 43 368999999997532 3467888999999999998876531 24568999999644
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-12 Score=124.74 Aligned_cols=218 Identities=14% Similarity=0.181 Sum_probs=134.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++++||||+|++|+++++.|++.++ +|+++.+.. +.+.+... ..+...+.+|++++ +...
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~---~V~~~~r~~-~~~~~~~~-------~~~~~~~~~D~~~~------~~v~ 69 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA---RVVAAARNA-AALDRLAG-------ETGCEPLRLDVGDD------AAIR 69 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHH-------HhCCeEEEecCCCH------HHHH
Confidence 4578999999999999999999999876 455554421 12211110 01245688999887 5555
Q ss_pred HHhc---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcC----CCceEEEEeeceecccccceee
Q 042694 188 VIAK---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCN----KLKLFVQVSTAYVNGQRRGKVM 253 (554)
Q Consensus 188 ~l~~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~----~~k~~v~vST~~v~~~~~~~i~ 253 (554)
.+.+ .+|+|||+|+.... .+.++..+++|+.++.++++.+.+.. ...+|+++||...+....
T Consensus 70 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---- 145 (245)
T PRK07060 70 AALAAAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLP---- 145 (245)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCC----
Confidence 5554 58999999997542 24677888999999999999886531 135899999875543211
Q ss_pred ccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeecccC
Q 042694 254 EKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 254 E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~~~~ 330 (554)
.. . .|..+|...+.+++.+. ...++++..+||+.+.++...
T Consensus 146 ------------------------~~------~------~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~ 189 (245)
T PRK07060 146 ------------------------DH------L------AYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAA 189 (245)
T ss_pred ------------------------CC------c------HhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhh
Confidence 00 0 22333444444443332 124799999999999775421
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
. .|.+. ....++. ... + ...+++++|++++++.++..... ...++++++.++
T Consensus 190 ~--~~~~~-~~~~~~~--------~~~---~--~~~~~~~~d~a~~~~~l~~~~~~--~~~G~~~~~~~g 241 (245)
T PRK07060 190 E--AWSDP-QKSGPML--------AAI---P--LGRFAEVDDVAAPILFLLSDAAS--MVSGVSLPVDGG 241 (245)
T ss_pred h--hccCH-HHHHHHH--------hcC---C--CCCCCCHHHHHHHHHHHcCcccC--CccCcEEeECCC
Confidence 1 11110 0000000 000 1 23478999999999888754321 224577877655
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=120.75 Aligned_cols=124 Identities=12% Similarity=0.059 Sum_probs=88.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++++||||||++|+.++++|++++. +|+++++.. .+.+.+.... ...++.++.+|++++ +..
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~ 70 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW---DLALVARSQDALEALAAELRS-----TGVKAAAYSIDLSNP------EAI 70 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----CCCcEEEEEccCCCH------HHH
Confidence 468999999999999999999999876 456555322 2222222111 224788899999987 555
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
..+.+ .+|+|||+|+.... .+.++...++|+.++.++++.+... .+..++|++||...+.
T Consensus 71 ~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 147 (241)
T PRK07454 71 APGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARN 147 (241)
T ss_pred HHHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCc
Confidence 54443 58999999986432 2457788999999998888776431 2456899999986654
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-12 Score=125.04 Aligned_cols=226 Identities=9% Similarity=0.078 Sum_probs=134.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHH-HHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFK-CLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~-~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++++|+||||||+||++++++|++.+..| +++.+.... .+.+.... ...++..+.+|++++ +.+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~v---~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~ 70 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAIP---VIFGRSAPDDEFAEELRA-----LQPRAEFVQVDLTDD------AQC 70 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCcE---EEEcCChhhHHHHHHHHh-----cCCceEEEEccCCCH------HHH
Confidence 467899999999999999999999988654 333321111 11111111 234688999999987 655
Q ss_pred HHHhc-------CccEEEEcCCCCC---c---hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceecccccce
Q 042694 187 DVIAK-------EVDVIVNSAANTT---F---DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNGQRRGK 251 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~---~---~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~~~~~~ 251 (554)
..+.+ .+|+|||+|+... + .+.++...++|+.++..+.+.+... .+..+|+++||........
T Consensus 71 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~-- 148 (258)
T PRK08628 71 RDAVEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQG-- 148 (258)
T ss_pred HHHHHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCC--
Confidence 55543 6899999999532 1 2567788999999999998887642 1235899999975532210
Q ss_pred eeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeecc
Q 042694 252 VMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 252 i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~~ 328 (554)
... .|..+|...+.+++... ...++++..+|||.|.++.
T Consensus 149 --------------------------~~~------------~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~ 190 (258)
T PRK08628 149 --------------------------GTS------------GYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPL 190 (258)
T ss_pred --------------------------CCc------------hhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHH
Confidence 000 23334444444443322 2358999999999998754
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. .|........... .......+ ....+++.+|++++++.++..... ...+..|.+.++
T Consensus 191 ~~---~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~~~~gg 249 (258)
T PRK08628 191 YE---NWIATFDDPEAKL----AAITAKIP----LGHRMTTAEEIADTAVFLLSERSS--HTTGQWLFVDGG 249 (258)
T ss_pred HH---HHhhhccCHHHHH----HHHHhcCC----ccccCCCHHHHHHHHHHHhChhhc--cccCceEEecCC
Confidence 32 2221110000000 00000000 002467889999999888765421 223567777654
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-11 Score=121.95 Aligned_cols=121 Identities=18% Similarity=0.098 Sum_probs=83.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|+||||||+||++++++|++++.+ |++.+.. ..+.+...... ...++..+.+|++++ ++...
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~---V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~------~~~~~ 66 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWR---LALADVNEEGGEETLKLLRE-----AGGDGFYQRCDVRDY------SQLTA 66 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHh-----cCCceEEEEccCCCH------HHHHH
Confidence 47999999999999999999998764 4444332 11111111110 234678899999987 55555
Q ss_pred Hhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeeceecc
Q 042694 189 IAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v~~ 246 (554)
+.+ .+|+|||+|+.... .+.++..+++|+.|+..+.+.+ ++ .+..++|++||.....
T Consensus 67 ~~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~vsS~~~~~ 141 (270)
T PRK05650 67 LAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKR-QKSGRIVNIASMAGLM 141 (270)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHh-CCCCEEEEECChhhcC
Confidence 443 69999999997643 2456778899999888876664 34 3567899999975543
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-11 Score=122.78 Aligned_cols=124 Identities=17% Similarity=0.214 Sum_probs=87.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ...++..+.+|++++ ++
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~---~Vi~~~R~~~~l~~~~~~l~~-----~~~~~~~~~~Dl~d~------~~ 103 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA---TVVAVARREDLLDAVADRITR-----AGGDAMAVPCDLSDL------DA 103 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 4678999999999999999999998775 45555432 22222222111 124577899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc---------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF---------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~ 245 (554)
...+.+ ++|+|||+||.... .+.++..+++|+.|+..+++.+.. + .+..++|++||..+.
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 182 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVL 182 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhc
Confidence 666655 79999999986432 134567889999998888776542 1 345789999997543
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.3e-12 Score=124.49 Aligned_cols=229 Identities=10% Similarity=0.015 Sum_probs=131.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+||||+|+||+++++.|++.+. +|+++++.. .+.+.+.... .....++..+.+|++++ ++..
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~---~vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~------~~i~ 69 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY---RVAVADINSEKAANVAQEINA---EYGEGMAYGFGADATSE------QSVL 69 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHH---hcCCceeEEEEccCCCH------HHHH
Confidence 57899999999999999999998775 455554321 1122111100 00113688999999987 5555
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeecee-cccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAYV-NGQR 248 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~v-~~~~ 248 (554)
.+.+ .+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+ ..+++++||... ++..
T Consensus 70 ~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~ 149 (259)
T PRK12384 70 ALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSK 149 (259)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCC
Confidence 4443 68999999986432 2467788999999998888877542 23 358999998542 1110
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHH----HHHHHhhhhhcCCCcEEEEcccee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEV----AQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~----ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
... .|..+|.. ++.++.+.. ..|+++.++|||.+
T Consensus 150 -----------------------------~~~------------~Y~~sKaa~~~l~~~la~e~~-~~gi~v~~v~pg~~ 187 (259)
T PRK12384 150 -----------------------------HNS------------GYSAAKFGGVGLTQSLALDLA-EYGITVHSLMLGNL 187 (259)
T ss_pred -----------------------------CCc------------hhHHHHHHHHHHHHHHHHHHH-HcCcEEEEEecCCc
Confidence 000 23333333 333333322 35899999999988
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+++... .+.+.... .. .....+.......+......+++.+|++++++.++..... ...+.+|++.++
T Consensus 188 ~~~~~~--~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~--~~~G~~~~v~~g 255 (259)
T PRK12384 188 LKSPMF--QSLLPQYA--KK--LGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASPKAS--YCTGQSINVTGG 255 (259)
T ss_pred ccchhh--hhhhHHHH--Hh--cCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCcccc--cccCceEEEcCC
Confidence 654211 11110000 00 0000000000001111234678899999999877654321 123678999876
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=121.16 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=87.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-h-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-E-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||+|+||+++++.|++.+.++ +.+.++ + ..+.+.+.... ...++..+.+|++++ +.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~ 69 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAV--AVNYAGSAAAADELVAEIEA-----AGGRAIAVQADVADA------AA 69 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEE--EEecCCCHHHHHHHHHHHHh-----cCCeEEEEECCCCCH------HH
Confidence 357899999999999999999999988643 222222 1 11222222111 235788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v 244 (554)
...+++ ++|+|||+|+.... .+.++..+++|+.|+.++++.+.+ +..-.+++++||...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~ 143 (245)
T PRK12937 70 VTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVI 143 (245)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccc
Confidence 655554 68999999997542 346778899999999999988864 222358999998644
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-11 Score=119.68 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=87.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||+|.||++++++|++.++ +|+++.+.. ...+.+.... ...++.++.+|++++ +.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~ 70 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA---TVAFNDGLAAEARELAAALEA-----AGGRAHAIAADLADP------AS 70 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 3578999999999999999999999876 455554321 1122211110 124688999999987 66
Q ss_pred HHHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 186 ADVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
.+.+. .++|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..+||++||...
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~ 146 (250)
T PRK12939 71 VQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTA 146 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhh
Confidence 65555 368999999997432 2467788899999999999988642 12348999999654
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-12 Score=124.73 Aligned_cols=117 Identities=17% Similarity=0.140 Sum_probs=87.1
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|+||||||+||++++++|++.|. +|+++.+.. +.+. ...+++.+.+|++++ ++++.
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~---~V~~~~r~~-~~~~----------~~~~~~~~~~D~~d~------~~~~~ 62 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY---RVFGTSRNP-ARAA----------PIPGVELLELDVTDD------ASVQA 62 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCh-hhcc----------ccCCCeeEEeecCCH------HHHHH
Confidence 357899999999999999999999876 455544321 1110 124678899999988 77666
Q ss_pred Hhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 189 IAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
+.+ .+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+.+++|++||...+
T Consensus 63 ~~~~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~ 136 (270)
T PRK06179 63 AVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGF 136 (270)
T ss_pred HHHHHHHhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCcccc
Confidence 655 47999999997542 2467889999999999999886321 357799999997553
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=119.27 Aligned_cols=222 Identities=17% Similarity=0.207 Sum_probs=132.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+.+++|+||||||+||+++++.|++.+.+ ++.+ ++. ..+.+...... ...++.++.+|++++ +
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~---v~~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~ 68 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK---VVIAYDINEEAAQELLEEIKE-----EGGDAIAVKADVSSE------E 68 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEcCCCHHHHHHHHHHHHh-----cCCeEEEEECCCCCH------H
Confidence 45789999999999999999999987753 4444 432 11122221111 234688999999988 6
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+..+.+ ++|+|||+|+.... .+.++..+++|+.|+.++++.+... .+.++||++||......
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~ 148 (247)
T PRK05565 69 DVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIG 148 (247)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccC
Confidence 6555543 79999999997532 2457788999999998888877642 23567999999755332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....+...+... ..+++.+++... ..|++++++|||.+-.+
T Consensus 149 ~~----------------------------~~~~y~~sK~a~--------~~~~~~~~~~~~-~~gi~~~~v~pg~v~t~ 191 (247)
T PRK05565 149 AS----------------------------CEVLYSASKGAV--------NAFTKALAKELA-PSGIRVNAVAPGAIDTE 191 (247)
T ss_pred CC----------------------------CccHHHHHHHHH--------HHHHHHHHHHHH-HcCeEEEEEEECCccCc
Confidence 11 000111111110 133444444433 35899999999998543
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....... . .... ..... + ...+...++++++++.++..... ...++++++.++
T Consensus 192 ~~~~~~~-~----~~~~--------~~~~~---~--~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~~~~~~ 244 (247)
T PRK05565 192 MWSSFSE-E----DKEG--------LAEEI---P--LGRLGKPEEIAKVVLFLASDDAS--YITGQIITVDGG 244 (247)
T ss_pred cccccCh-H----HHHH--------HHhcC---C--CCCCCCHHHHHHHHHHHcCCccC--CccCcEEEecCC
Confidence 2211110 0 0000 00000 0 12356779999988887754321 223567777654
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-12 Score=123.59 Aligned_cols=162 Identities=15% Similarity=0.150 Sum_probs=107.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+||||||+||+++++.|++.|. +|+++++. ..+.+.+.... ..++..+.+|++++ +.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~------~~i~ 66 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA---TLGLVARRTDALQAFAARLPK------AARVSVYAADVRDA------DALA 66 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhccc------CCeeEEEEcCCCCH------HHHH
Confidence 47899999999999999999999876 45555432 12222222211 12788999999987 5555
Q ss_pred HHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeeceecccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v~~~~ 248 (554)
.+.+ .+|++||+|+.... .+.++...++|+.|+..+++.. ++ .+..++|++||.......
T Consensus 67 ~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~-~~~~~iv~isS~~~~~~~ 145 (257)
T PRK07024 67 AAAADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRA-ARRGTLVGIASVAGVRGL 145 (257)
T ss_pred HHHHHHHHhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHh-cCCCEEEEEechhhcCCC
Confidence 5443 48999999986431 1457889999999999988743 33 345689999986543221
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~ 325 (554)
. ... .|..+|...+.+.+... ...|++++++|||.|.
T Consensus 146 ~----------------------------~~~------------~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~ 185 (257)
T PRK07024 146 P----------------------------GAG------------AYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIR 185 (257)
T ss_pred C----------------------------CCc------------chHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCc
Confidence 0 000 23444444444443322 2358999999999996
Q ss_pred ec
Q 042694 326 ST 327 (554)
Q Consensus 326 g~ 327 (554)
++
T Consensus 186 t~ 187 (257)
T PRK07024 186 TP 187 (257)
T ss_pred Cc
Confidence 54
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-12 Score=124.16 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=88.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++||||||+|+||+++++.|++.|. +|+.+++.. .+.+..... ....++..+.+|++++ +.
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~i~-----~~~~~~~~~~~Dl~d~------~~ 75 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGA---RVVLSARKAEELEEAAAHLE-----ALGIDALWIAADVADE------AD 75 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHH-----hcCCeEEEEEccCCCH------HH
Confidence 4678999999999999999999999776 455444321 122221111 0234678899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v~~ 246 (554)
++.+.+ .+|+|||+|+.... .+.++...++|+.|+.++++.+... ++..+||++||.....
T Consensus 76 i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~ 154 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLG 154 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhcc
Confidence 644432 58999999986421 2456788899999999999987653 2456899999975543
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=122.79 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=84.5
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|+||||||+||++++++|++.|. +|+++.+. .+++++.. ..++.++.+|++++ ++++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~-~~~l~~~~--------~~~~~~~~~Dv~~~------~~~~~ 63 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY---TVYGAARR-VDKMEDLA--------SLGVHPLSLDVTDE------ASIKA 63 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCC-HHHHHHHH--------hCCCeEEEeeCCCH------HHHHH
Confidence 468999999999999999999998876 45555432 22333221 12577899999987 77666
Q ss_pred Hhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHH----HHHHHcCCCceEEEEeecee
Q 042694 189 IAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLM----EFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll----~la~~~~~~k~~v~vST~~v 244 (554)
+.+ ++|+|||+|+.... .+.++..+++|+.|+..++ ..+++ .+..++|++||.+.
T Consensus 64 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~-~~~g~iv~isS~~~ 136 (273)
T PRK06182 64 AVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRA-QRSGRIINISSMGG 136 (273)
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHh-cCCCEEEEEcchhh
Confidence 654 78999999997543 2467788999999955544 45554 35678999999653
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=120.10 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=84.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|+||||||.||+.++++|++.|.+ |.+.++. -+++.+... ...++..+.+|++++ ++++.
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~~---v~~~~r~-~~~~~~~~~------~~~~~~~~~~D~~~~------~~~~~ 67 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGAR---VAIGDLD-EALAKETAA------ELGLVVGGPLDVTDP------ASFAA 67 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEECC-HHHHHHHHH------HhccceEEEccCCCH------HHHHH
Confidence 4689999999999999999999998764 4444322 122222111 112577899999987 55444
Q ss_pred Hh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 189 IA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 189 l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
+. ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+..++|++||....
T Consensus 68 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 141 (273)
T PRK07825 68 FLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGK 141 (273)
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCcccc
Confidence 33 368999999997532 2357788999999999888776431 345689999997553
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.1e-12 Score=122.93 Aligned_cols=120 Identities=17% Similarity=0.084 Sum_probs=84.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++||||||||+||+++++.|++.|.. |+++.+ .....+++.... ...++.++.+|++++ +.+.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~---v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~~ 67 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN---VIAGVQIAPQVTALRAEAAR-----RGLALRVEKLDLTDA------IDRA 67 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHh-----cCCcceEEEeeCCCH------HHHH
Confidence 468999999999999999999998764 444432 212222222111 223688899999988 6666
Q ss_pred HHhc-CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeecee
Q 042694 188 VIAK-EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~-~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v 244 (554)
.... ++|+|||+|+.... .+.++..+++|+.|+..+.+.+ .+ .+.+++|++||...
T Consensus 68 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~~SS~~~ 135 (257)
T PRK09291 68 QAAEWDVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVA-RGKGKVVFTSSMAG 135 (257)
T ss_pred HHhcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCceEEEEcChhh
Confidence 6655 89999999986432 2456778899999987776644 33 34579999998643
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=120.49 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=87.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.+++++|||||+|++|+.++++|++.|. +|+++++.. +. . ...++..+++|++++ +..+
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~---~v~~~~~~~---~~-~--------~~~~~~~~~~D~~~~------~~~~ 64 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA---KVIGFDQAF---LT-Q--------EDYPFATFVLDVSDA------AAVA 64 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecch---hh-h--------cCCceEEEEecCCCH------HHHH
Confidence 4578999999999999999999999876 445544332 11 1 234678899999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
.+.+ .+|+|||+|+.... .+.++..+++|+.++..+++.+... .+..+++++||...
T Consensus 65 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~ 138 (252)
T PRK08220 65 QVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAA 138 (252)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchh
Confidence 6654 48999999997542 3467889999999999999988531 23457999999754
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=119.10 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=82.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|+||||||++|++++++|++.|.+ |+++++. ..+.+... ...++..+.+|++++ +....
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~---V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dl~~~------~~i~~ 63 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHK---VIATGRRQERLQELKDE--------LGDNLYIAQLDVRNR------AAIEE 63 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHH--------hccceEEEEecCCCH------HHHHH
Confidence 57999999999999999999998764 4544432 12222221 123688899999987 65554
Q ss_pred Hhc-------CccEEEEcCCCCC--------chhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 189 IAK-------EVDVIVNSAANTT--------FDERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
+.+ ++|+|||+|+... ..+.++..+++|+.|+..+++.+... .+..+++++||...
T Consensus 64 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~ 137 (248)
T PRK10538 64 MLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAG 137 (248)
T ss_pred HHHHHHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCccc
Confidence 443 6999999998631 13467788999999977766665321 35678999999754
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=122.11 Aligned_cols=123 Identities=11% Similarity=0.080 Sum_probs=86.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||+|+||++++++|++.+. +|++++... .+..+... ....++.++.+|++++ +...
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~---~v~~~~~~~-~~~~~~~~-----~~~~~~~~~~~Dl~~~------~~~~ 72 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW---QVVLADLDR-ERGSKVAK-----ALGENAWFIAMDVADE------AQVA 72 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC---EEEEEcCCH-HHHHHHHH-----HcCCceEEEEccCCCH------HHHH
Confidence 5789999999999999999999999875 556554321 11111110 0124678899999987 5443
Q ss_pred HHh-------cCccEEEEcCCCCCc---------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceec
Q 042694 188 VIA-------KEVDVIVNSAANTTF---------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVN 245 (554)
Q Consensus 188 ~l~-------~~vdiViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~ 245 (554)
.+. ..+|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..++|++||....
T Consensus 73 ~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~ 148 (255)
T PRK05717 73 AGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR 148 (255)
T ss_pred HHHHHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc
Confidence 332 258999999997532 2356788999999999999999642 223579999987543
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-11 Score=118.45 Aligned_cols=122 Identities=11% Similarity=0.113 Sum_probs=85.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+|+||||||+||.++++.|+++|. +|+++++.. .+.+.+... .....++..+++|++++ ++.+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~---~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~------~~~~ 67 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA---RLYLAARDVERLERLADDLR----ARGAVAVSTHELDILDT------ASHA 67 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHH----HhcCCeEEEEecCCCCh------HHHH
Confidence 47899999999999999999999876 455554321 111111110 01234788999999987 6665
Q ss_pred HHhc----CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 188 VIAK----EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~----~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
.+.+ .+|+|||+|+.... .+.+....++|+.|+.++++.+... .+..+++++||...
T Consensus 68 ~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~ 138 (243)
T PRK07102 68 AFLDSLPALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAG 138 (243)
T ss_pred HHHHHHhhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccc
Confidence 5544 57999999986432 2345678899999999999887642 24578999998643
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=118.74 Aligned_cols=117 Identities=14% Similarity=0.205 Sum_probs=84.0
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++|+||||+|+||++++++|++.+. +|+++.+.. .+.+.+. ...++..+++|+++. ++.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~---~v~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~~~~------~~~ 67 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA---RVAITGRDPASLEAARAE--------LGESALVIRADAGDV------AAQ 67 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCCHHHHHHHHHH--------hCCceEEEEecCCCH------HHH
Confidence 578999999999999999999999875 455554321 2222221 124677899999887 544
Q ss_pred HHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeec
Q 042694 187 DVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTA 242 (554)
Q Consensus 187 ~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~ 242 (554)
..+. ..+|+|||+|+...+ .+.++..+++|+.|+..+++.+... .+..+++++||.
T Consensus 68 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~ 138 (249)
T PRK06500 68 KALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSI 138 (249)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEech
Confidence 4333 368999999997543 2467788999999999999999742 233467777764
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=118.62 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=90.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||+|+||++++++|++.|. +|+++.+...+.+.+.... ...++..+.+|++++ ++..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~vi~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~~ 68 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA---DIVGAGRSEPSETQQQVEA-----LGRRFLSLTADLSDI------EAIK 68 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCchHHHHHHHHHh-----cCCceEEEECCCCCH------HHHH
Confidence 4689999999999999999999999876 4555544322222222111 234688999999988 6655
Q ss_pred HHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeeceecc
Q 042694 188 VIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAYVNG 246 (554)
Q Consensus 188 ~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~v~~ 246 (554)
.+. .++|+|||+|+.... .+.++..+++|+.++..+++.+... .+ ..++|++||...+.
T Consensus 69 ~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 145 (248)
T TIGR01832 69 ALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQ 145 (248)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhcc
Confidence 443 369999999987532 2467788999999999999988532 12 45899999986654
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-11 Score=117.71 Aligned_cols=118 Identities=12% Similarity=0.090 Sum_probs=84.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+++|+||||||+||++++++|++.|. +|+++++.. +++.+... ...++.++.+|++++ ++.+.+
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~---~V~~~~r~~-~~~~~~~~------~~~~~~~~~~D~~~~------~~~~~~ 64 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGW---QVIACGRNQ-SVLDELHT------QSANIFTLAFDVTDH------PGTKAA 64 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCC---EEEEEECCH-HHHHHHHH------hcCCCeEEEeeCCCH------HHHHHH
Confidence 36899999999999999999998876 455554321 22222111 124678899999987 776666
Q ss_pred hcC----ccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeece
Q 042694 190 AKE----VDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAY 243 (554)
Q Consensus 190 ~~~----vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~ 243 (554)
.++ +|+++|+|+...+ .+.++...++|+.|+.++++.+... .+-.+++++||..
T Consensus 65 ~~~~~~~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~ 130 (240)
T PRK06101 65 LSQLPFIPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIA 130 (240)
T ss_pred HHhcccCCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechh
Confidence 653 6899999985432 2346788999999999999998752 2335788888854
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-11 Score=122.44 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=86.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||+.++++|++.|. +|+++.+. ..+.+.++... ...++..+.+|++++ ++
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~---~Vvl~~R~~~~l~~~~~~l~~-----~g~~~~~v~~Dv~d~------~~ 71 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA---KVVLLARGEEGLEALAAEIRA-----AGGEALAVVADVADA------EA 71 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHH-----cCCcEEEEEecCCCH------HH
Confidence 4578999999999999999999999876 45544432 22222222111 234688899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~ 246 (554)
.+.+.+ .+|++||+|+...+ .+.++..+++|+.|+.++.+.+.. + .+..++|++||...+.
T Consensus 72 v~~~~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~ 149 (334)
T PRK07109 72 VQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYR 149 (334)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhcc
Confidence 665543 69999999996432 245678888998887766555532 1 2356899999987654
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-11 Score=121.16 Aligned_cols=116 Identities=13% Similarity=0.120 Sum_probs=82.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+++|+||||||+||++++++|.+.|. +|+++.+.. +.+.+.. ..++..+.+|++++ ++.+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~---~Vi~~~r~~-~~~~~l~--------~~~~~~~~~Dl~d~------~~~~~~ 65 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW---RVFATCRKE-EDVAALE--------AEGLEAFQLDYAEP------ESIAAL 65 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH-HHHHHHH--------HCCceEEEccCCCH------HHHHHH
Confidence 57899999999999999999998775 455554321 1222111 12567899999987 555444
Q ss_pred hc--------CccEEEEcCCCCCc-------hhhHHHHHHHhchH----HHHHHHHHHHcCCCceEEEEeecee
Q 042694 190 AK--------EVDVIVNSAANTTF-------DERYDIAIDINTRG----PCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 190 ~~--------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~g----t~~ll~la~~~~~~k~~v~vST~~v 244 (554)
.+ .+|+|||+|+.... .+.++..+++|+.| ++.++..+++ .+..++|++||.+.
T Consensus 66 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~-~~~g~iv~isS~~~ 138 (277)
T PRK05993 66 VAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRK-QGQGRIVQCSSILG 138 (277)
T ss_pred HHHHHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhh-cCCCEEEEECChhh
Confidence 32 58999999986432 24567889999999 6666666666 35679999999644
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-11 Score=116.74 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=84.2
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc-
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK- 191 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~- 191 (554)
|+||||+|+||+++++.|+++++ +|+++.+...+.+...... . .....++..+.+|++++ +.++.+.+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~-~-~~~~~~~~~~~~D~~~~------~~~~~~~~~ 69 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA---KVIITYRSSEEGAEEVVEE-L-KAYGVKALGVVCDVSDR------EDVKAVVEE 69 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCchhHHHHHHHH-H-HhcCCceEEEEecCCCH------HHHHHHHHH
Confidence 58999999999999999999876 4555543211221111100 0 00123578899999987 65555543
Q ss_pred ------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 192 ------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 192 ------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
.+|+|||+|+.... .+.++...+.|+.++..+++.+... .+.++|+++||...
T Consensus 70 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~ 138 (239)
T TIGR01830 70 IEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVG 138 (239)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccc
Confidence 47999999997542 2456788999999999999988642 24568999999644
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=137.89 Aligned_cols=231 Identities=15% Similarity=0.164 Sum_probs=139.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..+++|+||||+|+||+++++.|++.|. +|++++... .+.+...... ..++..+.+|++++ +.
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga---~Vvl~~r~~~~~~~~~~~l~~------~~~v~~v~~Dvtd~------~~ 484 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA---CVVLADLDEEAAEAAAAELGG------PDRALGVACDVTDE------AA 484 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC---EEEEEeCCHHHHHHHHHHHhc------cCcEEEEEecCCCH------HH
Confidence 4679999999999999999999998775 566654322 2222222111 14788999999987 65
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCC-ceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKL-KLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~-k~~v~vST~~v~~~ 247 (554)
...+.+ ++|+|||+||.... .+.++..+++|+.|+..+++.+... .+. .+||++||......
T Consensus 485 v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~ 564 (681)
T PRK08324 485 VQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNP 564 (681)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCC
Confidence 555443 68999999996432 3467788999999999998877532 122 68999999755332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEcccee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVI 324 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V 324 (554)
.. .. . .|..+|...+.+++... ...|+++.+++|+.|
T Consensus 565 ~~----------------------------~~------~------~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v 604 (681)
T PRK08324 565 GP----------------------------NF------G------AYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAV 604 (681)
T ss_pred CC----------------------------Cc------H------HHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCcee
Confidence 11 00 0 23333444444444332 234799999999999
Q ss_pred e-ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 E-STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~-g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+ ++.- .-+.|.........+ ....+.....+.....++++++|++++++.++.... ....+.+|++.++
T Consensus 605 ~~~t~~-~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~--~~~tG~~i~vdgG 674 (681)
T PRK08324 605 VRGSGI-WTGEWIEARAAAYGL----SEEELEEFYRARNLLKREVTPEDVAEAVVFLASGLL--SKTTGAIITVDGG 674 (681)
T ss_pred ecCCcc-ccchhhhhhhhhccC----ChHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCccc--cCCcCCEEEECCC
Confidence 7 4321 001221110000000 000000011223334578999999999988764211 1234689999887
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-11 Score=118.96 Aligned_cols=119 Identities=18% Similarity=0.102 Sum_probs=85.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+|+||||||+||+.++++|++.+. +|++++.. ..+.+.... ...++..+.+|+++. ++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~D~~~~------~~v~ 64 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW---RVGAYDINEAGLAALAAEL-------GAGNAWTGALDVTDR------AAWD 64 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHh-------cCCceEEEEecCCCH------HHHH
Confidence 47899999999999999999999875 45555432 122222221 124788999999987 5555
Q ss_pred HHhc--------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 188 VIAK--------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~--------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
.+.+ ++|+|||+|+.... .+.++..+.+|+.|+..+++.+... .+..++|++||...
T Consensus 65 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~ 139 (260)
T PRK08267 65 AALADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASA 139 (260)
T ss_pred HHHHHHHHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhh
Confidence 4433 57999999997542 2467889999999999999888531 23468999999744
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=125.25 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=83.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++|+||||||+||++++++|++.|.+ |+++.+. .+++.+... ...++..+.+|++++ ++.+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~---Vv~~~R~-~~~~~~~~~------~l~~v~~~~~Dl~d~------~~v~ 87 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAH---VIVPARR-PDVAREALA------GIDGVEVVMLDLADL------ESVR 87 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCC-HHHHHHHHH------HhhhCeEEEccCCCH------HHHH
Confidence 46789999999999999999999998764 4544332 122222111 012477899999987 6665
Q ss_pred HHh-------cCccEEEEcCCCCCc-----hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeecee
Q 042694 188 VIA-------KEVDVIVNSAANTTF-----DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~-------~~vdiViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v 244 (554)
.+. .++|+|||+||.... .+.++..+++|+.|+..+.+.+ ++ .+..++|++||...
T Consensus 88 ~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~-~~~~~iV~vSS~~~ 159 (315)
T PRK06196 88 AFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAA-GAGARVVALSSAGH 159 (315)
T ss_pred HHHHHHHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCeEEEECCHHh
Confidence 554 368999999996432 2356788999999976666544 33 23468999999743
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-11 Score=116.56 Aligned_cols=123 Identities=14% Similarity=0.044 Sum_probs=85.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++++||||||+||++++++|++++. +|+++.+. ..+.+...... .....++..+.+|++++ ++..
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~------~~~~ 69 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR---DLALCARRTDRLEELKAELLA---RYPGIKVAVAALDVNDH------DQVF 69 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHh---hCCCceEEEEEcCCCCH------HHHH
Confidence 57899999999999999999999875 45544332 12222221111 00134788999999987 5555
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
.+.+ .+|+|||+||.... .+.++...++|+.|+..+++.+... .+..++|++||...
T Consensus 70 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~ 143 (248)
T PRK08251 70 EVFAEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSA 143 (248)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 4433 68999999986432 2456678899999999988877421 35678999999654
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=118.58 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=88.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc-chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN-AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~-~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++++||||||||+||+.+++.|++.|..| +++. +...+.+.+.... ...++.++.+|++++ +..
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~i 78 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADI---IITTHGTNWDETRRLIEK-----EGRKVTFVQVDLTKP------ESA 78 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEE---EEEeCCcHHHHHHHHHHh-----cCCceEEEEcCCCCH------HHH
Confidence 468999999999999999999999987643 3332 2222333332211 234688999999987 666
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
..+++ .+|++||+|+.... .+.++..+++|+.++..+.+.+... .+..+++++||...+
T Consensus 79 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 154 (258)
T PRK06935 79 EKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSF 154 (258)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhc
Confidence 65554 68999999997532 3467788999999988887776531 245689999997654
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.3e-11 Score=120.03 Aligned_cols=201 Identities=16% Similarity=0.179 Sum_probs=126.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||.||++++++|++.|.+ |+++.+ +..+.+.++... ...++.++.+|++++ ++
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~---Vvl~~R~~~~l~~~~~~~~~-----~g~~~~~~~~Dv~d~------~~ 70 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGAR---LVLAARDEEALQAVAEECRA-----LGAEVLVVPTDVTDA------DQ 70 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeeCCCH------HH
Confidence 35789999999999999999999998864 454433 222222222111 234677899999987 66
Q ss_pred HHHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+. ..+|++||+|+...+ .+.++...++|+.|+.++.+.+... .+...+|++||...+...
T Consensus 71 v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~ 150 (330)
T PRK06139 71 VKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQ 150 (330)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCC
Confidence 66665 368999999986432 2456788999999999988776421 234589999886543221
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCch----HHHHHHHhhhhhcCCCcEEEEcccee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDG----EVAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k----~~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
|... .|..+| .+++.+..+.....++.++.+.|+.|
T Consensus 151 ----------------------------p~~~------------~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v 190 (330)
T PRK06139 151 ----------------------------PYAA------------AYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFM 190 (330)
T ss_pred ----------------------------CCch------------hHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCc
Confidence 1111 122233 25566655543334899999999998
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHH
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQ 383 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~ 383 (554)
..+.. .+..+. . +. . ......+...+++|++++.++..
T Consensus 191 ~T~~~----~~~~~~--~-------~~-~-------~~~~~~~~~pe~vA~~il~~~~~ 228 (330)
T PRK06139 191 DTPGF----RHGANY--T-------GR-R-------LTPPPPVYDPRRVAKAVVRLADR 228 (330)
T ss_pred cCccc----cccccc--c-------cc-c-------ccCCCCCCCHHHHHHHHHHHHhC
Confidence 55322 111110 0 00 0 00112356889999999988764
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-11 Score=116.68 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=84.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+++||||+|+||+++++.|++.|. +|+++++. ..+.+...... ...++.++.+|++++ +..+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~~~ 67 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF---KVAIVDYNEETAQAAADKLSK-----DGGKAIAVKADVSDR------DQVF 67 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEECCCCCH------HHHH
Confidence 57899999999999999999999875 45555432 12222222111 134678899999998 5555
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeecee
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v 244 (554)
.+.+ ++|+|||+|+.... .+.++..+++|+.|+..+++.+... +...+++++||...
T Consensus 68 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~ 142 (256)
T PRK08643 68 AAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAG 142 (256)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccc
Confidence 5443 68999999986432 2456788999999998887777542 12347899998643
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-11 Score=120.22 Aligned_cols=122 Identities=19% Similarity=0.189 Sum_probs=87.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+++||||+|+||++++++|++.|. +|++++.. ..+.+.+... ...++..+++|++++ +.
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~---~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~d~------~~ 80 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGA---KVCIVDLQDDLGQNVCDSLG------GEPNVCFFHCDVTVE------DD 80 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhc------CCCceEEEEeecCCH------HH
Confidence 4688999999999999999999999876 45555432 2222222221 124688999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc---------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF---------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
.+.+.+ ++|+|||+||.... .+.++...++|+.|+..+++.+... .+..+++++||...
T Consensus 81 ~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~ 158 (280)
T PLN02253 81 VSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVAS 158 (280)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhh
Confidence 665554 69999999997531 2467889999999999999877642 12347888887644
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.9e-11 Score=116.63 Aligned_cols=122 Identities=17% Similarity=0.209 Sum_probs=86.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+++||||||.||.+++++|++.|.+ |++..+. ..+.+.+.... ...++..+.+|++++ +.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~------~~ 72 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQ---VAIAARHLDALEKLADEIGT-----SGGKVVPVCCDVSQH------QQ 72 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCCHHHHHHHHHHHHh-----cCCeEEEEEccCCCH------HH
Confidence 46899999999999999999999998864 4544332 22222222111 124678899999987 65
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c-CC--CceEEEEeece
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C-NK--LKLFVQVSTAY 243 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~-~~--~k~~v~vST~~ 243 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+++.+.. + ++ -.+++++||.+
T Consensus 73 ~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~ 148 (253)
T PRK05867 73 VTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMS 148 (253)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHH
Confidence 555443 79999999997543 245678889999999999998854 2 11 23688888764
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=114.07 Aligned_cols=121 Identities=17% Similarity=0.276 Sum_probs=86.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++|+||||+|+||+.++++|++.|.+ |+++++. ..+.+..... ...++..+.+|++++ +..
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~D~~d~------~~~ 68 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGAR---LLLVGRNAEKLEALAARLP------YPGRHRWVVADLTSE------AGR 68 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHh------cCCceEEEEccCCCH------HHH
Confidence 5789999999999999999999998864 5554432 1222222210 234788999999987 555
Q ss_pred HHHh------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 187 DVIA------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 187 ~~l~------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
..+. ..+|+|||+||...+ .+.++...++|+.|+.++++.+... .+..+++++||...
T Consensus 69 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~ 142 (263)
T PRK09072 69 EAVLARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFG 142 (263)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhh
Confidence 5443 368999999997643 2456788899999999999888542 23457888888644
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=117.47 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=87.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||++++++|++.+. +|+++.+. ..+.+..... ....++..+.+|++++ ++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~---~Vi~~~r~~~~~~~~~~~l~-----~~~~~~~~~~~D~~~~------~~ 72 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA---KVVLASRRVERLKELRAEIE-----AEGGAAHVVSLDVTDY------QS 72 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHH-----hcCCcEEEEEecCCCH------HH
Confidence 4679999999999999999999998775 45555432 1222222211 0124688899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC--------CceEEEEe
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK--------LKLFVQVS 240 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~--------~k~~v~vS 240 (554)
...+.+ .+|+|||+|+.... .+.++..+++|+.|+..+++.+... .. ..+++++|
T Consensus 73 ~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~s 152 (258)
T PRK06949 73 IKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIA 152 (258)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEEC
Confidence 665554 58999999996432 2467788999999999999877531 11 24899999
Q ss_pred eceec
Q 042694 241 TAYVN 245 (554)
Q Consensus 241 T~~v~ 245 (554)
|....
T Consensus 153 S~~~~ 157 (258)
T PRK06949 153 SVAGL 157 (258)
T ss_pred ccccc
Confidence 87553
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-11 Score=119.29 Aligned_cols=220 Identities=14% Similarity=0.112 Sum_probs=134.6
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
..++++||||||+|+||.++++.|++.|.+ |+++... ..+.+...... ...++.++.+|+++.
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~---V~l~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------ 108 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGAD---IAIVYLDEHEDANETKQRVEK-----EGVKCLLIPGDVSDE------ 108 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCcchHHHHHHHHHHh-----cCCeEEEEEccCCCH------
Confidence 356889999999999999999999998764 4444321 11222221110 234688899999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceeccc
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~ 247 (554)
+..+.+++ ++|+|||+|+.... .+.+...+++|+.|+.++++.+... ....++|++||...+..
T Consensus 109 ~~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~ 188 (290)
T PRK06701 109 AFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEG 188 (290)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCC
Confidence 55555543 68999999986422 2356788999999999999998752 23358999999876543
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEccce
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
..+ .. .|..+|. +++.++.... ..|+++..+|||.
T Consensus 189 ~~~----------------------------~~------------~Y~~sK~a~~~l~~~la~~~~-~~gIrv~~i~pG~ 227 (290)
T PRK06701 189 NET----------------------------LI------------DYSATKGAIHAFTRSLAQSLV-QKGIRVNAVAPGP 227 (290)
T ss_pred CCC----------------------------cc------------hhHHHHHHHHHHHHHHHHHhh-hcCeEEEEEecCC
Confidence 210 00 1222222 3333333322 2489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|..+... .... ......+. .......+..++|++++++.++..... ...+.++++.++
T Consensus 228 v~T~~~~---~~~~-----~~~~~~~~---------~~~~~~~~~~~~dva~~~~~ll~~~~~--~~~G~~i~idgg 285 (290)
T PRK06701 228 IWTPLIP---SDFD-----EEKVSQFG---------SNTPMQRPGQPEELAPAYVFLASPDSS--YITGQMLHVNGG 285 (290)
T ss_pred CCCcccc---cccC-----HHHHHHHH---------hcCCcCCCcCHHHHHHHHHHHcCcccC--CccCcEEEeCCC
Confidence 8664321 1000 00000000 001123577889999999887765321 123567777665
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.6e-11 Score=113.93 Aligned_cols=120 Identities=20% Similarity=0.263 Sum_probs=88.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|+||||||++|+++++.|++.+. .+|+++.+.. +++.+ ...++.++.+|++++ +.+..
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~--~~V~~~~r~~-~~~~~---------~~~~~~~~~~D~~~~------~~~~~ 66 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGA--AKVYAAARDP-ESVTD---------LGPRVVPLQLDVTDP------ASVAA 66 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCc--ccEEEEecCh-hhhhh---------cCCceEEEEecCCCH------HHHHH
Confidence 568999999999999999999999875 2345444321 12211 124788899999987 67666
Q ss_pred Hhc---CccEEEEcCCC-CC-------chhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 189 IAK---EVDVIVNSAAN-TT-------FDERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 189 l~~---~vdiViH~AA~-v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
+.+ .+|+|||+|+. .. ..+.+....++|+.++..+++++... .+..+|+++||...+.
T Consensus 67 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~ 138 (238)
T PRK08264 67 AAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV 138 (238)
T ss_pred HHHhcCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc
Confidence 665 58999999987 21 13567788999999999999987531 2456899999976543
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=119.30 Aligned_cols=123 Identities=14% Similarity=0.066 Sum_probs=82.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEE-EcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFI-INAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~-~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+++|+||||||+||++++++|++.+.+| ++ ..+. .+...+.... ......++..+.+|++++ +..+.
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v---~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~D~~d~------~~i~~ 68 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTV---AVNYQQN-LHAAQEVVNL--ITQAGGKAFVLQADISDE------NQVVA 68 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEE---EEEeCCC-hHHHHHHHHH--HHhCCCeEEEEEccCCCH------HHHHH
Confidence 3689999999999999999999988654 32 2221 1222111110 000123578899999988 66665
Q ss_pred Hhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc------CCCceEEEEeecee
Q 042694 189 IAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC------NKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~------~~~k~~v~vST~~v 244 (554)
+.+ .+|+|||+|+.... .+.++...++|+.|+..+++.+... .+..+||++||...
T Consensus 69 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~ 145 (247)
T PRK09730 69 MFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAAS 145 (247)
T ss_pred HHHHHHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhh
Confidence 544 57899999986421 2356788999999998888766442 11246999999754
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=112.65 Aligned_cols=216 Identities=14% Similarity=0.126 Sum_probs=129.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
++|+||||+|+||+++++.|++.+. +|+++++...+..++.... ......++.++.+|+.++ +....+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~---~vi~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~------~~v~~~~ 71 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY---RVIATYFSGNDCAKDWFEE--YGFTEDQVRLKELDVTDT------EECAEAL 71 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCcHHHHHHHHHH--hhccCCeEEEEEcCCCCH------HHHHHHH
Confidence 5899999999999999999998775 5666543211212111100 001234688999999987 5554443
Q ss_pred c-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeeceeccccccee
Q 042694 191 K-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYVNGQRRGKV 252 (554)
Q Consensus 191 ~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v~~~~~~~i 252 (554)
+ .+|+|||+|+.... .+.++...++|+.|+.++.+.+ ++ .+..+||++||...+....
T Consensus 72 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~iss~~~~~~~~--- 147 (245)
T PRK12824 72 AEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCE-QGYGRIINISSVNGLKGQF--- 147 (245)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hCCeEEEEECChhhccCCC---
Confidence 3 58999999987531 3457788999999998886544 43 3567999999975543211
Q ss_pred eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 253 MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 253 ~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
... .|..+|. +++.++.... ..++++.+++|+.+.++.
T Consensus 148 -------------------------~~~------------~Y~~sK~a~~~~~~~l~~~~~-~~~i~v~~v~pg~~~t~~ 189 (245)
T PRK12824 148 -------------------------GQT------------NYSAAKAGMIGFTKALASEGA-RYGITVNCIAPGYIATPM 189 (245)
T ss_pred -------------------------CCh------------HHHHHHHHHHHHHHHHHHHHH-HhCeEEEEEEEcccCCcc
Confidence 000 1222222 3344443322 347999999999987643
Q ss_pred cCCcc-ccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFS-GWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~-g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..... .+.. . +. .. .....+..++++++++..++..... .-.++++++.++
T Consensus 190 ~~~~~~~~~~------~----~~-~~--------~~~~~~~~~~~va~~~~~l~~~~~~--~~~G~~~~~~~g 241 (245)
T PRK12824 190 VEQMGPEVLQ------S----IV-NQ--------IPMKRLGTPEEIAAAVAFLVSEAAG--FITGETISINGG 241 (245)
T ss_pred hhhcCHHHHH------H----HH-hc--------CCCCCCCCHHHHHHHHHHHcCcccc--CccCcEEEECCC
Confidence 32111 0000 0 00 00 0112355778999998777643221 224678888876
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=114.84 Aligned_cols=227 Identities=16% Similarity=0.133 Sum_probs=134.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||++++++|++.+.. +|+++++.. ...+..... ....++..+.+|++++ +.
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~--~V~~~~r~~~~~~~~~~~l~-----~~~~~~~~~~~D~~~~------~~ 70 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAA--GLVICGRNAEKGEAQAAELE-----ALGAKAVFVQADLSDV------ED 70 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHHHH-----hcCCeEEEEEccCCCH------HH
Confidence 46789999999999999999999987753 366665421 111111111 1234678899999987 65
Q ss_pred HHHHhc-------CccEEEEcCCCCC-------chhhHHHHHHHhchHHHHHHHHHHHcC----CCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT-------FDERYDIAIDINTRGPCRLMEFAKQCN----KLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~~----~~k~~v~vST~~v~~~ 247 (554)
...+++ .+|+|||+|+... -.+.++...++|+.|+.++++.+.+.- ...++|++||...++.
T Consensus 71 ~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~ 150 (260)
T PRK06198 71 CRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGG 150 (260)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC
Confidence 555543 5899999998643 134567789999999999998875421 1247999999866543
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEcccee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVI 324 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V 324 (554)
.. ... .|..+|...+.+++... ...++.++.++|+.+
T Consensus 151 ~~----------------------------~~~------------~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~ 190 (260)
T PRK06198 151 QP----------------------------FLA------------AYCASKGALATLTRNAAYALLRNRIRVNGLNIGWM 190 (260)
T ss_pred CC----------------------------Ccc------------hhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccc
Confidence 21 000 22233333333333221 134799999999998
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.++.......-..+ ........ ... ......+++++++++++..++.... +...++++.+.++
T Consensus 191 ~t~~~~~~~~~~~~--~~~~~~~~-~~~--------~~~~~~~~~~~~~a~~~~~l~~~~~--~~~~G~~~~~~~~ 253 (260)
T PRK06198 191 ATEGEDRIQREFHG--APDDWLEK-AAA--------TQPFGRLLDPDEVARAVAFLLSDES--GLMTGSVIDFDQS 253 (260)
T ss_pred cCcchhhhhhhccC--CChHHHHH-Hhc--------cCCccCCcCHHHHHHHHHHHcChhh--CCccCceEeECCc
Confidence 77542110000000 00000000 000 0011346789999999998765432 1234578877765
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8e-11 Score=118.43 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=88.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc----hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA----ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~----~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.++++++||||+|+||++++++|++.|.+ |++... ...+.+.+... ....++..+.+|++++
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~---Vi~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dl~~~------ 112 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGAD---VAISYLPVEEEDAQDVKKIIE-----ECGRKAVLLPGDLSDE------ 112 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCE---EEEecCCcchhhHHHHHHHHH-----HcCCeEEEEEccCCCH------
Confidence 56789999999999999999999998864 444431 11222222111 1234677899999987
Q ss_pred HHHHHHh-------cCccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecc
Q 042694 184 DLADVIA-------KEVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 184 ~~~~~l~-------~~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~ 246 (554)
+....+. ..+|++||+|+... + .+.++..+++|+.|+..+++.+... ..-.++|++||...+.
T Consensus 113 ~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~ 191 (294)
T PRK07985 113 KFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ 191 (294)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhcc
Confidence 5554443 35899999998632 1 2467889999999999999988652 2235899999976643
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=113.80 Aligned_cols=229 Identities=13% Similarity=0.142 Sum_probs=129.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++++|+||||+|+||.+++++|++.|.+| -+++.+. ...+.+.+.... . .....++..+++|++++ +..
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~v-v~i~~~~~~~~~~~~~~~~~-l-~~~~~~~~~~~~D~~~~------~~~ 76 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKA-VAIHYNSAASKADAEETVAA-V-KAAGAKAVAFQADLTTA------AAV 76 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcE-EEEecCCccchHHHHHHHHH-H-HHhCCcEEEEecCcCCH------HHH
Confidence 457899999999999999999999987653 1222111 111111111100 0 00124678899999988 666
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeeceecccccce
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYVNGQRRGK 251 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v~~~~~~~ 251 (554)
+.+.+ ++|++||+|+.... .+.++...++|+.|+..+++.+.. +....++++++|..+.....
T Consensus 77 ~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~~-- 154 (257)
T PRK12744 77 EKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFTP-- 154 (257)
T ss_pred HHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccCC--
Confidence 55543 68999999997421 235778899999999999998864 22234677664433221110
Q ss_pred eeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeecc
Q 042694 252 VMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 252 i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~~ 328 (554)
.. . .|..+|...+.+.+... ...|+++.+++||.+..+.
T Consensus 155 --------------------------~~------~------~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~ 196 (257)
T PRK12744 155 --------------------------FY------S------AYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPF 196 (257)
T ss_pred --------------------------Cc------c------cchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccch
Confidence 00 0 34444443444433332 1247999999999996643
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+.... .. .. ....... ..+-....+.+++|+++++..++.. .. .-.+.++++.++
T Consensus 197 ~~~~~~~-------~~-~~-~~~~~~~---~~~~~~~~~~~~~dva~~~~~l~~~-~~--~~~g~~~~~~gg 253 (257)
T PRK12744 197 FYPQEGA-------EA-VA-YHKTAAA---LSPFSKTGLTDIEDIVPFIRFLVTD-GW--WITGQTILINGG 253 (257)
T ss_pred hcccccc-------ch-hh-ccccccc---ccccccCCCCCHHHHHHHHHHhhcc-cc--eeecceEeecCC
Confidence 2211000 00 00 0000000 0011112477889999999888763 21 112468887765
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-10 Score=112.26 Aligned_cols=122 Identities=11% Similarity=0.069 Sum_probs=81.4
Q ss_pred cCcEEEEecccccccHHHHHHHHhhC-CCccEEEEEcch--h-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTV-PDVGKIFIINAE--L-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~~~--~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
++++|+||||||.||++++++|++.+ . +|+++.+. . .+.+.++... ....+++.+++|++++ +
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~---~V~~~~r~~~~~~~~~~~~l~~----~~~~~v~~~~~D~~~~------~ 73 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA---RVVLAALPDDPRRDAAVAQMKA----AGASSVEVIDFDALDT------D 73 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC---eEEEEeCCcchhHHHHHHHHHh----cCCCceEEEEecCCCh------H
Confidence 57899999999999999999999875 4 45554322 1 2223222211 1123688999999987 4
Q ss_pred HHHHHh------cCccEEEEcCCCCCch-------hhHHHHHHHhchHHHHH----HHHHHHcCCCceEEEEeecee
Q 042694 185 LADVIA------KEVDVIVNSAANTTFD-------ERYDIAIDINTRGPCRL----MEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 185 ~~~~l~------~~vdiViH~AA~v~~~-------~~~~~~~~~Nv~gt~~l----l~la~~~~~~k~~v~vST~~v 244 (554)
+...+. .++|++||++|..... +...+.+++|+.|+..+ +.++++ .+..+++++||...
T Consensus 74 ~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~-~~~~~iv~isS~~g 149 (253)
T PRK07904 74 SHPKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRA-QGFGQIIAMSSVAG 149 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHh-cCCceEEEEechhh
Confidence 433332 2799999999875321 12235689999988764 555554 35679999999753
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=114.35 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=83.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|+++||||||+||++++++|++.|.. +++.......+..+.... ......++..+.+|+++. ++...
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~---vv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~------~~~~~ 70 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFK---VVAGCGPNSPRRVKWLED--QKALGFDFIASEGNVGDW------DSTKA 70 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCE---EEEEcCCChHHHHHHHHH--HHhcCCcEEEEEcCCCCH------HHHHH
Confidence 4689999999999999999999998763 444321111111111100 000234677889999987 55554
Q ss_pred Hhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeecee
Q 042694 189 IAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v 244 (554)
+.+ ++|+|||+|+.... .+.++...++|+.|+..+.+.+.. + .+..+++++||...
T Consensus 71 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 143 (246)
T PRK12938 71 AFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNG 143 (246)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhc
Confidence 443 68999999997531 346788899999997776665543 1 34568999999654
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.2e-11 Score=115.31 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=87.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.+++++|||||+|+||++++++|++.|. +|++.++.. +.+.+...+ . .....++..+.+|++++ +..+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~---~vvl~~r~~-~~~~~~~~~-l-~~~~~~~~~~~~Dl~~~------~~~~ 74 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA---EIIINDITA-ERAELAVAK-L-RQEGIKAHAAPFNVTHK------QEVE 74 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC---EEEEEcCCH-HHHHHHHHH-H-HhcCCeEEEEecCCCCH------HHHH
Confidence 3678999999999999999999999876 455554321 122211100 0 00124677899999988 6655
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
.+.+ .+|+|||+|+.... .+.++...++|+.|+..+++.+... .+..++|++||...
T Consensus 75 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~ 148 (254)
T PRK08085 75 AAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQS 148 (254)
T ss_pred HHHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchh
Confidence 5543 58999999996432 3567789999999999888877642 23468999998643
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=113.34 Aligned_cols=216 Identities=17% Similarity=0.170 Sum_probs=128.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++++||||+|+||..+++.|++.+. +|++++... +++...... . .....++..+.+|++++ +..+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~---~vi~~~r~~-~~~~~~~~~-~-~~~~~~~~~~~~D~~~~------~~~~ 70 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA---KLALIDLNQ-EKLEEAVAE-C-GALGTEVRGYAANVTDE------EDVE 70 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHHH-H-HhcCCceEEEEcCCCCH------HHHH
Confidence 3578999999999999999999998775 455554331 222211110 0 00234678899999887 4444
Q ss_pred HHhc-------CccEEEEcCCCCCc----------------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEe
Q 042694 188 VIAK-------EVDVIVNSAANTTF----------------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVS 240 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~----------------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vS 240 (554)
.+.+ .+|+|||+|+.... .+.+....++|+.|+..+.+.+... ..-..++++|
T Consensus 71 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~s 150 (253)
T PRK08217 71 ATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINIS 150 (253)
T ss_pred HHHHHHHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 4333 57999999985321 2456678889999998877655421 1224689999
Q ss_pred eceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHH----HHHHhhhhhcCCCcE
Q 042694 241 TAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVA----QKMKGLGLERGDIPV 316 (554)
Q Consensus 241 T~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~a----e~l~e~~~~~~glp~ 316 (554)
|...++... .. .|..+|... +.++... ...++++
T Consensus 151 s~~~~~~~~-----------------------------~~------------~Y~~sK~a~~~l~~~la~~~-~~~~i~v 188 (253)
T PRK08217 151 SIARAGNMG-----------------------------QT------------NYSASKAGVAAMTVTWAKEL-ARYGIRV 188 (253)
T ss_pred cccccCCCC-----------------------------Cc------------hhHHHHHHHHHHHHHHHHHH-HHcCcEE
Confidence 875543210 00 222333322 3333322 2358999
Q ss_pred EEEccceeeecccCCc-cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEE
Q 042694 317 VIIRPSVIESTCKEPF-SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVY 395 (554)
Q Consensus 317 ~I~Rp~~V~g~~~~p~-~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vy 395 (554)
+.++|+.|.++..... +.... . ... ..+ ...+.+++++++++..++.... ..+.+|
T Consensus 189 ~~v~pg~v~t~~~~~~~~~~~~------~----~~~-~~~--------~~~~~~~~~~a~~~~~l~~~~~----~~g~~~ 245 (253)
T PRK08217 189 AAIAPGVIETEMTAAMKPEALE------R----LEK-MIP--------VGRLGEPEEIAHTVRFIIENDY----VTGRVL 245 (253)
T ss_pred EEEeeCCCcCccccccCHHHHH------H----HHh-cCC--------cCCCcCHHHHHHHHHHHHcCCC----cCCcEE
Confidence 9999999976433211 11000 0 000 000 1235688999999988875322 235799
Q ss_pred EeeCC
Q 042694 396 QIASS 400 (554)
Q Consensus 396 n~~~~ 400 (554)
++.++
T Consensus 246 ~~~gg 250 (253)
T PRK08217 246 EIDGG 250 (253)
T ss_pred EeCCC
Confidence 98876
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.1e-11 Score=116.43 Aligned_cols=123 Identities=14% Similarity=0.101 Sum_probs=88.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||+++++.|++.|. +|+++++. ..+.+.+.... ...++..+.+|++++ +.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~---~Vi~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~------~~ 73 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA---DVLIAARTESQLDEVAEQIRA-----AGRRAHVVAADLAHP------EA 73 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 4678999999999999999999999775 45555432 12222222111 134688899999987 65
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v 244 (554)
...+.+ ++|+|||+|+.... .+.++...++|+.|+..+++.+... .+..++|++||...
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~ 150 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMG 150 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccc
Confidence 554443 68999999986432 2467888999999999999998641 24568999998643
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=114.92 Aligned_cols=125 Identities=15% Similarity=0.194 Sum_probs=88.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||+|+||+++++.|++.|. +|+++++ +..+.+.+.... .....++..+.+|++++ ++
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~---~vv~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~------~~ 72 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA---AVALADLDAALAERAAAAIAR---DVAGARVLAVPADVTDA------AS 72 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh---ccCCceEEEEEccCCCH------HH
Confidence 4688999999999999999999999876 4555443 222222222110 00134688899999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v 244 (554)
...+.+ .+|++||+|+...+ .+.++..+++|+.|+..+++.+.. + .+..++|++||...
T Consensus 73 ~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 148 (260)
T PRK07063 73 VAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHA 148 (260)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhh
Confidence 665554 69999999996432 346788899999999999888753 1 23468999999754
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=114.19 Aligned_cols=124 Identities=16% Similarity=0.169 Sum_probs=83.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE--cc-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII--NA-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~--~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|+++||||+|+||++++++|++.|.. |.+. +. +..+.+...... ...++..+..|+++. +
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~---v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~ 67 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGAL---VAIHYGNRKEEAEETVYEIQS-----NGGSAFSIGANLESL------H 67 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCe---EEEEcCCCHHHHHHHHHHHHh-----cCCceEEEecccCCH------H
Confidence 35789999999999999999999998864 3333 22 211222111110 123567889999876 3
Q ss_pred HHH----HHh---------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeece
Q 042694 185 LAD----VIA---------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAY 243 (554)
Q Consensus 185 ~~~----~l~---------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~ 243 (554)
... .+. ..+|++||+||.... .+.++..+++|+.|+..+++.+.. +.+-.++|++||..
T Consensus 68 ~~~~~~~~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~ 147 (252)
T PRK12747 68 GVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA 147 (252)
T ss_pred HHHHHHHHHHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcc
Confidence 222 221 169999999996421 234678889999999999988764 22335899999986
Q ss_pred ec
Q 042694 244 VN 245 (554)
Q Consensus 244 v~ 245 (554)
..
T Consensus 148 ~~ 149 (252)
T PRK12747 148 TR 149 (252)
T ss_pred cc
Confidence 53
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=113.30 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=87.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++++|+||||+|+||.++++.|++.|. +|+++.+. ......... ...++..+.+|++++ ++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~---~Vi~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~------~~~ 76 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA---RVALLDRSEDVAEVAAQL-------LGGNAKGLVCDVSDS------QSV 76 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHh-------hCCceEEEEecCCCH------HHH
Confidence 4688999999999999999999998875 45544432 111111111 124567899999987 655
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
+.+.+ ++|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..+||++||...
T Consensus 77 ~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~ 151 (255)
T PRK06841 77 EAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAG 151 (255)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhh
Confidence 55543 68999999997542 2356778999999999999988642 24568999999754
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=113.35 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=78.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
++|+||||||++|+++++.|++.+.+ |+++.+.. +++.... ..++..+.+|+.++ +....+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~---v~~~~r~~-~~~~~~~--------~~~~~~~~~D~~~~------~~~~~~~ 64 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYR---VLAACRKP-DDVARMN--------SLGFTGILLDLDDP------ESVERAA 64 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCH-HHhHHHH--------hCCCeEEEeecCCH------HHHHHHH
Confidence 57999999999999999999988764 44443321 2222111 12467789999876 4433322
Q ss_pred --------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHH----HHHHHHcCCCceEEEEeecee
Q 042694 191 --------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRL----MEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 191 --------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~l----l~la~~~~~~k~~v~vST~~v 244 (554)
..+|.|+|+||.... .+.++...++|+.|+.++ ++.+++ .+.++++++||.+.
T Consensus 65 ~~i~~~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-~~~~~iv~~ss~~~ 136 (256)
T PRK08017 65 DEVIALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLP-HGEGRIVMTSSVMG 136 (256)
T ss_pred HHHHHhcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhh-cCCCEEEEEcCccc
Confidence 357999999986432 245778899999998876 454444 35678999999744
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=114.09 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=89.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+++||||||.||+.++++|++.|.+ |+++.....+.+.+.... ...++.++.+|++++ ++.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~---vv~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~~~ 71 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGAD---IVGVGVAEAPETQAQVEA-----LGRKFHFITADLIQQ------KDID 71 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEecCchHHHHHHHHHH-----cCCeEEEEEeCCCCH------HHHH
Confidence 46899999999999999999999998864 454443222222222111 234788999999988 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CC-CceEEEEeeceecc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NK-LKLFVQVSTAYVNG 246 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~-~k~~v~vST~~v~~ 246 (554)
.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. + .+ -.++|++||...+.
T Consensus 72 ~~~~~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~ 148 (251)
T PRK12481 72 SIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ 148 (251)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC
Confidence 6654 58999999997542 256788899999999988887754 2 11 35899999976543
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=118.40 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=85.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||++++++|++.|. +|+++.+. ..+...+.... .....++..+.+|+++. ++
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~---~vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~~~Dl~d~------~~ 81 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA---HVVLAVRNLDKGKAAAARITA---ATPGADVTLQELDLTSL------AS 81 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHH---hCCCCceEEEECCCCCH------HH
Confidence 4679999999999999999999999876 44444321 11111111110 00124678899999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-----hhhHHHHHHHhchH----HHHHHHHHHHcCCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-----DERYDIAIDINTRG----PCRLMEFAKQCNKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-----~~~~~~~~~~Nv~g----t~~ll~la~~~~~~k~~v~vST~~v~ 245 (554)
.+.+++ ++|+|||+||.... .+.++..+++|+.| +..+++.+++. +..++|++||....
T Consensus 82 v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~ 156 (306)
T PRK06197 82 VRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSSGGHR 156 (306)
T ss_pred HHHHHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECCHHHh
Confidence 555543 58999999996432 23567788999999 66666666552 45799999998643
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.6e-11 Score=115.84 Aligned_cols=122 Identities=16% Similarity=0.053 Sum_probs=81.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+|+||||||+||+.+++.|++.+.+| +.+.++. ..+.+.+.... ...++..+++|++++ ++.+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~~~ 68 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSV--GINYARDAAAAEETADAVRA-----AGGRACVVAGDVANE------ADVI 68 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEE--EEEeCCCHHHHHHHHHHHHh-----cCCcEEEEEeccCCH------HHHH
Confidence 4689999999999999999999987643 2222221 11112111111 234788999999987 5554
Q ss_pred HHh-------cCccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHH-HcCC-----CceEEEEeecee
Q 042694 188 VIA-------KEVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAK-QCNK-----LKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~-------~~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~-~~~~-----~k~~v~vST~~v 244 (554)
.+. ..+|+|||+|+.... .+.++..+++|+.|+..+++.+. .+.. -.++|++||...
T Consensus 69 ~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~ 146 (248)
T PRK06947 69 AMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIAS 146 (248)
T ss_pred HHHHHHHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhh
Confidence 443 269999999986421 23567789999999988875443 3311 135999998654
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=113.23 Aligned_cols=122 Identities=21% Similarity=0.217 Sum_probs=83.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+++||||+|+||+++++.|++.|.+ |+++.....+..++.. ..++.++.+|++++ +..+
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~---v~~~~~~~~~~~~~l~--------~~~~~~~~~Dl~~~------~~~~ 67 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAK---VAVLYNSAENEAKELR--------EKGVFTIKCDVGNR------DQVK 67 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCcHHHHHHHH--------hCCCeEEEecCCCH------HHHH
Confidence 45789999999999999999999998864 4443221112221111 11467899999987 6665
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~ 246 (554)
.+.+ ++|+|||+|+.... .+.++..+++|+.|+..+.+.+.. + .+..++|++||...++
T Consensus 68 ~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~ 143 (255)
T PRK06463 68 KSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIG 143 (255)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCC
Confidence 5543 68999999987431 245778899999997665544432 1 2456899999976543
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=114.92 Aligned_cols=125 Identities=16% Similarity=0.241 Sum_probs=86.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++||||+|+||++++++|++.|. +|+++++. ..+.+.+.... ...++.++.+|++++ ++
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~ 73 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA---KVAILDRNQEKAEAVVAEIKA-----AGGEALAVKADVLDK------ES 73 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEECCCCCH------HH
Confidence 4678999999999999999999998876 45555432 12222221111 124688899999987 55
Q ss_pred HHHHhc-------CccEEEEcCCCCCc----------------------hhhHHHHHHHhchHHHHHHHHHHH-c--CCC
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF----------------------DERYDIAIDINTRGPCRLMEFAKQ-C--NKL 233 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~----------------------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~ 233 (554)
...+.+ .+|++||+|+.... .+.++..+++|+.++..+++.+.. + .+.
T Consensus 74 v~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 153 (278)
T PRK08277 74 LEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKG 153 (278)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 554433 78999999995321 245778899999999877766543 1 234
Q ss_pred ceEEEEeeceecc
Q 042694 234 KLFVQVSTAYVNG 246 (554)
Q Consensus 234 k~~v~vST~~v~~ 246 (554)
.++|++||...+.
T Consensus 154 g~ii~isS~~~~~ 166 (278)
T PRK08277 154 GNIINISSMNAFT 166 (278)
T ss_pred cEEEEEccchhcC
Confidence 6899999976643
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=113.14 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=86.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++||||||.||.++++.|++.|. +|+++.+ +..+.+.+.... ...++..+.+|++++ +.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~ 69 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA---KVVVGARRQAELDQLVAEIRA-----EGGEAVALAGDVRDE------AY 69 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCH------HH
Confidence 3578999999999999999999999876 4555543 222222222111 124678899999987 65
Q ss_pred HHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+..++|++||...+
T Consensus 70 ~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~ 147 (254)
T PRK07478 70 AKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGH 147 (254)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhh
Confidence 555543 68999999997431 1457788999999888776655421 234579999997543
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=114.68 Aligned_cols=117 Identities=11% Similarity=0.103 Sum_probs=83.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|+||||||++|+++++.|++.|. +|+++++.. +.+.... ..++..+.+|++++ +..+.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~-~~~~~~~--------~~~~~~~~~Dl~~~------~~~~~~ 62 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY---EVWATARKA-EDVEALA--------AAGFTAVQLDVNDG------AALARL 62 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHH--------HCCCeEEEeeCCCH------HHHHHH
Confidence 46899999999999999999998775 455554321 1222111 12456789999987 666555
Q ss_pred h-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeecee
Q 042694 190 A-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYV 244 (554)
Q Consensus 190 ~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v 244 (554)
. .++|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..++|++||...
T Consensus 63 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~ 133 (274)
T PRK05693 63 AEELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSG 133 (274)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccc
Confidence 4 368999999996432 2567788999999999999887531 13357889888654
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=113.68 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=86.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+++++++||||||+||+.+++.|++.|. +|+++.+.. .....+... ....++..+.+|++++ ++.
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~---~Vv~~~r~~~~~~~~~~~~-----~~~~~~~~~~~Dl~~~------~~v 69 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGA---NLILLDISPEIEKLADELC-----GRGHRCTAVVADVRDP------ASV 69 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEecCCHHHHHHHHHHH-----HhCCceEEEECCCCCH------HHH
Confidence 3578999999999999999999999876 455554321 111111110 0124678899999987 666
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
+.+.+ .+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+..+++++||...
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 144 (263)
T PRK08226 70 AAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTG 144 (263)
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHh
Confidence 65544 68999999997433 2356678999999999999887531 23468999998643
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=115.98 Aligned_cols=123 Identities=24% Similarity=0.238 Sum_probs=87.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++++++||||+|+||++++++|++.|. +|++.+.. ..+.+.+.... ...++..+.+|++++ +
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga---~Vv~~~~~~~~~~~~~~~~i~~-----~g~~~~~~~~Dv~d~------~ 75 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGA---TVVVNDVASALDASDVLDEIRA-----AGAKAVAVAGDISQR------A 75 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCCchhHHHHHHHHHHh-----cCCeEEEEeCCCCCH------H
Confidence 5789999999999999999999999876 44544321 11222221110 234788999999987 6
Q ss_pred HHHHHhc------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-C-C--------CceEEEEee
Q 042694 185 LADVIAK------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-N-K--------LKLFVQVST 241 (554)
Q Consensus 185 ~~~~l~~------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~-~--------~k~~v~vST 241 (554)
....+.+ .+|++||+|+.... .+.++..+++|+.|+..+++.+... . + -.++|++||
T Consensus 76 ~~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS 155 (306)
T PRK07792 76 TADELVATAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSS 155 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECC
Confidence 6665543 68999999997542 3467888999999999999887531 0 0 137899988
Q ss_pred cee
Q 042694 242 AYV 244 (554)
Q Consensus 242 ~~v 244 (554)
...
T Consensus 156 ~~~ 158 (306)
T PRK07792 156 EAG 158 (306)
T ss_pred ccc
Confidence 654
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=112.70 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=88.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++++||||+|.||++++++|++.|.+ |+.++...-+...+.... ...++..+.+|++++ ++.+
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~---vv~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~~~ 73 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCD---IVGINIVEPTETIEQVTA-----LGRRFLSLTADLRKI------DGIP 73 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEecCcchHHHHHHHHh-----cCCeEEEEECCCCCH------HHHH
Confidence 46789999999999999999999998764 444432211111111110 134678899999987 6665
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cC---CCceEEEEeeceecc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CN---KLKLFVQVSTAYVNG 246 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~---~~k~~v~vST~~v~~ 246 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+.. +. .-.++|++||...+.
T Consensus 74 ~~~~~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 150 (253)
T PRK08993 74 ALLERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQ 150 (253)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhcc
Confidence 5553 68999999997542 256888999999999999988754 21 124799999986544
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-10 Score=113.42 Aligned_cols=221 Identities=20% Similarity=0.188 Sum_probs=143.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
++|+|||||||+|++++++|++++++| ++..-+......+ . ..+.+..+|+.++ ..+....
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v-~~~~r~~~~~~~~-----------~-~~v~~~~~d~~~~------~~l~~a~ 61 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEV-RAAVRNPEAAAAL-----------A-GGVEVVLGDLRDP------KSLVAGA 61 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEE-EEEEeCHHHHHhh-----------c-CCcEEEEeccCCH------hHHHHHh
Confidence 479999999999999999999987655 2222222221111 1 4788999999999 8899999
Q ss_pred cCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccccc
Q 042694 191 KEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVS 270 (554)
Q Consensus 191 ~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~ 270 (554)
++++.++++.+... .+. ........+..+..+.+. .+.++++++|...+.....
T Consensus 62 ~G~~~~~~i~~~~~-~~~--~~~~~~~~~~~~~a~~a~--~~~~~~~~~s~~~~~~~~~--------------------- 115 (275)
T COG0702 62 KGVDGVLLISGLLD-GSD--AFRAVQVTAVVRAAEAAG--AGVKHGVSLSVLGADAASP--------------------- 115 (275)
T ss_pred ccccEEEEEecccc-ccc--chhHHHHHHHHHHHHHhc--CCceEEEEeccCCCCCCCc---------------------
Confidence 99999999998765 333 223344444444444444 2577888888765432110
Q ss_pred cccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeec
Q 042694 271 NSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYG 350 (554)
Q Consensus 271 ~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~ 350 (554)
. . +.-++...|......|++.+++||+.++....... .. ....
T Consensus 116 ---------------~------~----~~~~~~~~e~~l~~sg~~~t~lr~~~~~~~~~~~~---~~---------~~~~ 158 (275)
T COG0702 116 ---------------S------A----LARAKAAVEAALRSSGIPYTTLRRAAFYLGAGAAF---IE---------AAEA 158 (275)
T ss_pred ---------------c------H----HHHHHHHHHHHHHhcCCCeEEEecCeeeeccchhH---HH---------HHHh
Confidence 0 1 11223444555556799999999777655333211 10 0001
Q ss_pred cceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 351 KGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 351 ~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
.+.. .. ..+......+.++|++.++..+...+. ..+++|.++++ ...+..+..+.+.+..+++
T Consensus 159 ~~~~-~~-~~~~~~~~~i~~~d~a~~~~~~l~~~~----~~~~~~~l~g~--~~~~~~~~~~~l~~~~gr~ 221 (275)
T COG0702 159 AGLP-VI-PRGIGRLSPIAVDDVAEALAAALDAPA----TAGRTYELAGP--EALTLAELASGLDYTIGRP 221 (275)
T ss_pred hCCc-ee-cCCCCceeeeEHHHHHHHHHHHhcCCc----ccCcEEEccCC--ceecHHHHHHHHHHHhCCc
Confidence 1111 01 122336789999999999887765433 23589999998 7899999999999999875
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=113.16 Aligned_cols=120 Identities=14% Similarity=0.183 Sum_probs=88.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++||||||.||++++++|++.|. +|+++++.. .+.+.+. ...++.++.+|++++ ++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dl~~~------~~ 66 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA---RVAIVDIDADNGAAVAAS--------LGERARFIATDITDD------AA 66 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHH--------hCCeeEEEEecCCCH------HH
Confidence 3578999999999999999999999886 455554321 2222222 134688999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCC------chhhHHHHHHHhchHHHHHHHHHHH-c-CCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTT------FDERYDIAIDINTRGPCRLMEFAKQ-C-NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~------~~~~~~~~~~~Nv~gt~~ll~la~~-~-~~~k~~v~vST~~v 244 (554)
...+++ .+|++||+|+... ..+.++..+++|+.|+..+++.+.. + .+-.++|++||...
T Consensus 67 ~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~ 140 (261)
T PRK08265 67 IERAVATVVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISA 140 (261)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhh
Confidence 655543 6899999998642 1356788899999999999988764 2 23358999998654
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=113.87 Aligned_cols=122 Identities=17% Similarity=0.273 Sum_probs=83.4
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+|+||||+|+||+++++.|++.|. +|+++++. ..+.+.+..... .....+..+.+|++++ +.++.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~------~~~~~ 68 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA---KVFLTDINDAAGLDAFAAEINAA---HGEGVAFAAVQDVTDE------AQWQA 68 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCcchHHHHHHHHHHhc---CCCceEEEEEeecCCH------HHHHH
Confidence 389999999999999999999876 45555432 222222221110 0112345688999987 66555
Q ss_pred Hhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhch----HHHHHHHHHHHcCCCceEEEEeeceecc
Q 042694 189 IAK-------EVDVIVNSAANTTF-------DERYDIAIDINTR----GPCRLMEFAKQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~----gt~~ll~la~~~~~~k~~v~vST~~v~~ 246 (554)
+.+ .+|+|||+|+.... .+.+...+++|+. +++.+++.+++ .+.++++++||...+.
T Consensus 69 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~ii~~ss~~~~~ 143 (251)
T PRK07069 69 LLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRA-SQPASIVNISSVAAFK 143 (251)
T ss_pred HHHHHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhh-cCCcEEEEecChhhcc
Confidence 443 68999999997643 2356778889998 77777777776 3567999999976644
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=113.66 Aligned_cols=120 Identities=14% Similarity=0.056 Sum_probs=85.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+++|+||||||+||.+++++|++.|.. |+++ ++ +..+.+.+.... ...++..+.+|++++ +..
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~---V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~~ 67 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFD---IGITWHSDEEGAKETAEEVRS-----HGVRAEIRQLDLSDL------PEG 67 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCChHHHHHHHHHHHh-----cCCceEEEEccCCCH------HHH
Confidence 578999999999999999999998864 4433 22 222222222111 234788899999988 655
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcC----CCceEEEEeece
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCN----KLKLFVQVSTAY 243 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~----~~k~~v~vST~~ 243 (554)
+.+.+ .+|+|||+|+.... .+.++..+.+|+.|+..+++.+...- +-.++|++||..
T Consensus 68 ~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~ 142 (256)
T PRK12743 68 AQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVH 142 (256)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecc
Confidence 54443 58999999987442 24678889999999999999886521 124899999864
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=113.48 Aligned_cols=127 Identities=12% Similarity=0.063 Sum_probs=86.0
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
..++++|+||||||+||.+++++|++.|. +|+++++. ..+.+.+.... ....++.++.+|+...+ ++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~---~Vi~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~d~~~~~----~~ 77 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA---TVILLGRTEEKLEAVYDEIEA----AGGPQPAIIPLDLLTAT----PQ 77 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHh----cCCCCceEEEecccCCC----HH
Confidence 46789999999999999999999999775 45555432 22233222211 12246677888886321 13
Q ss_pred HHHHHh-------cCccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 185 LADVIA-------KEVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 185 ~~~~l~-------~~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
+...+. ..+|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..+|+++||...
T Consensus 78 ~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~ 155 (247)
T PRK08945 78 NYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVG 155 (247)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhh
Confidence 333322 368999999986432 2467889999999998888877421 35678999999643
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=111.85 Aligned_cols=121 Identities=12% Similarity=0.160 Sum_probs=82.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++|+||||+|+||++++++|++.+.+ |++......+.+.+.... .++..+.+|++++ +.+.
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~---v~~~~~~~~~~~~~l~~~-------~~~~~~~~D~~~~------~~~~ 67 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGAN---VRFTYAGSKDAAERLAQE-------TGATAVQTDSADR------DAVI 67 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEecCCCHHHHHHHHHH-------hCCeEEecCCCCH------HHHH
Confidence 45789999999999999999999988764 444322111222211100 1245678999876 4444
Q ss_pred HHhc---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeecee
Q 042694 188 VIAK---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v 244 (554)
.+.+ .+|++||+|+.... .+.++...++|+.|+..+++.+.. +..-.++|++||...
T Consensus 68 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~ 135 (237)
T PRK12742 68 DVVRKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNG 135 (237)
T ss_pred HHHHHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 4443 58999999987432 245788999999999999766554 333468999999643
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=113.14 Aligned_cols=121 Identities=13% Similarity=0.199 Sum_probs=85.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+++||||+|.||+++++.|++.|. +|++.++.. .+.+.+.... ...++..+.+|++++ +..+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~---~Vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~~ 66 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA---NVVITGRTKEKLEEAKLEIEQ-----FPGQVLTVQMDVRNP------EDVQ 66 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEecCCCH------HHHH
Confidence 57899999999999999999999775 566554321 2222221111 124788999999987 6665
Q ss_pred HHhc-------CccEEEEcCCCCC---c----hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeecee
Q 042694 188 VIAK-------EVDVIVNSAANTT---F----DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~---~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~v 244 (554)
.+.+ .+|+|||+|+... + .+.++..+++|+.|+.++++.+... .+ ..+++++||.+.
T Consensus 67 ~~~~~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~ 141 (252)
T PRK07677 67 KMVEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYA 141 (252)
T ss_pred HHHHHHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhh
Confidence 5443 6899999998522 1 2456788999999999999988531 12 358999998754
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-10 Score=112.83 Aligned_cols=123 Identities=13% Similarity=0.154 Sum_probs=86.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||+|+||++++++|++.+.. +++.+. +..+.+...... ...++..+.+|++++ ++
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~---vv~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~------~~ 74 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGAS---VVVSDINADAANHVVDEIQQ-----LGGQAFACRCDITSE------QE 74 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 45899999999999999999999998754 444432 222222221110 124677889999987 55
Q ss_pred HHHHh-------cCccEEEEcCCCCCc------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 186 ADVIA-------KEVDVIVNSAANTTF------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
...+. ..+|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..++|++||...
T Consensus 75 i~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~ 149 (255)
T PRK06113 75 LSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAA 149 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccc
Confidence 54433 268999999997532 2567778999999999999998631 23358999999754
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=112.36 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=84.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++++|+||||||+||++++++|.+.|. +|+++.+..-+ . ...++.++.+|++++ +..+
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~r~~~~----~--------~~~~~~~~~~D~~~~------~~~~ 65 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGA---RVVTTARSRPD----D--------LPEGVEFVAADLTTA------EGCA 65 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCC---EEEEEeCChhh----h--------cCCceeEEecCCCCH------HHHH
Confidence 5689999999999999999999998775 45555432111 0 124678899999987 5544
Q ss_pred HHh-------cCccEEEEcCCCCC---------chhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 188 VIA-------KEVDVIVNSAANTT---------FDERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 188 ~l~-------~~vdiViH~AA~v~---------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
.+. ..+|+|||+|+... -.+.++..+++|+.|+..+.+.+... .+..++|++||....
T Consensus 66 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~ 142 (260)
T PRK06523 66 AVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRR 142 (260)
T ss_pred HHHHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEeccccc
Confidence 333 36899999998532 13467888999999998887765421 234589999997543
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=111.80 Aligned_cols=120 Identities=11% Similarity=0.176 Sum_probs=83.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++++|+||||+|+||++++++|++.|.+ |++. ++. .+.+...... ...++..+.+|++++ ++..
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~~---vv~~~~~~-~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~~ 68 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGAR---VVVNYHQS-EDAAEALADE-----LGDRAIALQADVTDR------EQVQ 68 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCe---EEEEcCCC-HHHHHHHHHH-----hCCceEEEEcCCCCH------HHHH
Confidence 5689999999999999999999998864 3333 321 1222111110 124788899999987 5555
Q ss_pred HHhc-------C-ccEEEEcCCCCC---------c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeece
Q 042694 188 VIAK-------E-VDVIVNSAANTT---------F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAY 243 (554)
Q Consensus 188 ~l~~-------~-vdiViH~AA~v~---------~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~ 243 (554)
.+.+ . +|+|||+|+... + .+.+...+++|+.|+..+++.+... .+..+++++||..
T Consensus 69 ~~~~~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~ 148 (253)
T PRK08642 69 AMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNL 148 (253)
T ss_pred HHHHHHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 5543 2 999999997521 1 2456788999999999999998631 2346899999853
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=112.59 Aligned_cols=119 Identities=16% Similarity=0.143 Sum_probs=82.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+++|+||||||+||++++++|++.|. +|+++.+.....+.. ....++..+.+|++++ ++.+.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~---~v~~~~r~~~~~~~~--------~~~~~~~~~~~D~~~~------~~~~~~ 63 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI---AVLGVARSRHPSLAA--------AAGERLAEVELDLSDA------AAAAAW 63 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC---EEEEEecCcchhhhh--------ccCCeEEEEEeccCCH------HHHHHH
Confidence 36899999999999999999998775 444444321111111 1234788899999987 555542
Q ss_pred h-----------cCccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 190 A-----------KEVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 190 ~-----------~~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
. ..+|++||+|+.... .+.++..+++|+.|+..+.+.+.+. .+..++|++||...+
T Consensus 64 ~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~ 141 (243)
T PRK07023 64 LAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAAR 141 (243)
T ss_pred HHHHHHHHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhc
Confidence 2 158999999997542 2456788999999977776665432 234689999997543
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-10 Score=111.73 Aligned_cols=123 Identities=11% Similarity=0.125 Sum_probs=88.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||+|+||+.+++.|++.|. +|+++++. ..+.+.+.... ...++..+.+|++++ ++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~ 74 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA---HVLVNGRNAATLEAAVAALRA-----AGGAAEALAFDIADE------EA 74 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEccCCCH------HH
Confidence 5689999999999999999999998775 56665432 12222221111 234688999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v 244 (554)
...+.+ .+|+|||+|+.... .+.++....+|+.|+..+.+.+.+ + .+..++|++||...
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~ 150 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAG 150 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechh
Confidence 555443 57999999997432 246778899999999999977753 1 24578999999754
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-10 Score=111.25 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=81.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||++++++|++.+. +|++++... .+.+.+.. +...+.+|++++ +.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~---~v~~~~r~~~~~~~~~~~~----------~~~~~~~D~~~~------~~ 65 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA---TVVVGDIDPEAGKAAADEV----------GGLFVPTDVTDE------DA 65 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHc----------CCcEEEeeCCCH------HH
Confidence 5689999999999999999999999876 455544321 12222211 114688999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc---------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeece
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF---------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAY 243 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~ 243 (554)
.+.+.+ ++|+|||+|+.... .+.++...++|+.|+..+++.+.. + .+..++|++||..
T Consensus 66 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~ 142 (255)
T PRK06057 66 VNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFV 142 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchh
Confidence 655554 57999999986532 135778899999999888776642 1 2345789988853
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-10 Score=112.17 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=86.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++++++||||+|+||++++++|++.|. +|+++++. ..+.+.+.... ...++..+.+|++++ +
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~---~v~~~~r~~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~------~ 71 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGA---DVALFDLRTDDGLAETAEHIEA-----AGRRAIQIAADVTSK------A 71 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCcchHHHHHHHHHHh-----cCCceEEEEcCCCCH------H
Confidence 4678999999999999999999999876 44554432 12222222111 134678899999987 5
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeecee
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYV 244 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v 244 (554)
....+.+ ++|+|||+|+.... .+.++..+++|+.|+..+++.+.. + .+..++|++||...
T Consensus 72 ~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~ 148 (254)
T PRK06114 72 DLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSG 148 (254)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhh
Confidence 5554443 57999999997542 246788899999999888777643 1 23468999998754
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-10 Score=112.67 Aligned_cols=115 Identities=14% Similarity=0.232 Sum_probs=86.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+||||||+|+||++++++|++.|. +|+++.+.. . ...++..+.+|++++ ++.+
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~---~Vi~~~r~~-------~-------~~~~~~~~~~D~~~~------~~i~ 60 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS---NVINFDIKE-------P-------SYNDVDYFKVDVSNK------EQVI 60 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCc-------c-------ccCceEEEEccCCCH------HHHH
Confidence 4578999999999999999999999886 455554321 0 112678899999987 6655
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
.+.+ .+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+..++|++||....
T Consensus 61 ~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 135 (258)
T PRK06398 61 KGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSF 135 (258)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhc
Confidence 5443 68999999986432 3467788999999999998887542 245689999997554
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=112.57 Aligned_cols=123 Identities=17% Similarity=0.189 Sum_probs=85.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||+|+||++++++|++.|. +|+.++.. ..+.+.+.... ...++..+++|+++. ++
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~---~Vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~ 71 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA---HVIVSSRKLDGCQAVADAIVA-----AGGKAEALACHIGEM------EQ 71 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEEcCCCCH------HH
Confidence 4578999999999999999999999876 45555432 22222222111 123567889999987 55
Q ss_pred HHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
.+.+.+ .+|+|||+|+.... .+.++...++|+.|+..+++.+... .+..+++++||.+.
T Consensus 72 ~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~ 148 (252)
T PRK07035 72 IDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNG 148 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhh
Confidence 554443 58999999986421 2456788999999998888776331 24568999998644
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.7e-10 Score=125.83 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=89.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++||||||+||++++++|++.|. +|+++.+. ..+.+.+.... ...++..+.+|++++ ++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 434 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGA---TVFLVARNGEALDELVAEIRA-----KGGTAHAYTCDLTDS------AA 434 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEecCCCH------HH
Confidence 4578999999999999999999999876 45555432 12222221111 134688999999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCC---c------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT---F------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~---~------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~ 246 (554)
.+.+.+ .+|++||+|+... + .+.++..+++|+.|+.++++.+.. + .+..++|++||..++.
T Consensus 435 ~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 514 (657)
T PRK07201 435 VDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQT 514 (657)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC
Confidence 665554 6899999999642 1 245778899999999888777642 1 2456899999987654
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-10 Score=112.73 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=86.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++++|+||||+|+||++++++|++.|. +|+++++.. ...+.+.... ...++..+.+|++++ ++
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 72 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA---NVAVASRSQEKVDAAVAQLQQ-----AGPEGLGVSADVRDY------AA 72 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHH-----hCCceEEEECCCCCH------HH
Confidence 4688999999999999999999998775 455554321 1122111111 123667899999987 65
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-C-CCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-N-KLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~-~~k~~v~vST~~v 244 (554)
.+.+.+ .+|+|||+|+.... .+.++..+++|+.|+.++++.+... . +-.+++++||...
T Consensus 73 i~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~ 147 (264)
T PRK07576 73 VEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQA 147 (264)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhh
Confidence 655543 57999999975321 3467788999999999999988642 1 2248999999754
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-10 Score=111.93 Aligned_cols=125 Identities=13% Similarity=0.143 Sum_probs=86.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||+|+||++++++|++.+. +|+++++. ..+++.+.... ...++..+.+|++++ +.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~ 70 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA---KVVVADRDAAGGEETVALIRE-----AGGEALFVACDVTRD------AE 70 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEcCCCCH------HH
Confidence 4678999999999999999999998875 45555432 12222222111 234688999999987 55
Q ss_pred HHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~ 246 (554)
...+.+ .+|+|||+|+... + .+.++...++|+.++..+++.+.. + .+..+++++||...+.
T Consensus 71 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~ 149 (253)
T PRK06172 71 VKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLG 149 (253)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcc
Confidence 555443 5799999998632 2 246778899999999877765432 1 2346899999976543
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=111.60 Aligned_cols=122 Identities=15% Similarity=0.133 Sum_probs=81.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|++|||||||+||+++++.|++.+.. ++++.++..+++.+.... ......++..+.+|++++ +.++.+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~---v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~------~~~~~~~ 69 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYR---VAANCGPNEERAEAWLQE--QGALGFDFRVVEGDVSSF------ESCKAAV 69 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCCHHHHHHHHHH--HHhhCCceEEEEecCCCH------HHHHHHH
Confidence 57999999999999999999998764 443322111222111100 001234788999999987 5554443
Q ss_pred -------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeecee
Q 042694 191 -------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 191 -------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v 244 (554)
..+|+|||+|+.... .+.++...++|+.++..+++.+ ++ .+..+++++||...
T Consensus 70 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~iss~~~ 140 (242)
T TIGR01829 70 AKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRE-RGWGRIINISSVNG 140 (242)
T ss_pred HHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCcEEEEEcchhh
Confidence 358999999986531 2467788899999988765554 33 35678999998643
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-10 Score=109.41 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=82.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|+|+||||||+||++++++|++.|. +|+++.+.... . . ...++.+|++++ +..+.
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~---~v~~~~r~~~~----~--------~--~~~~~~~D~~~~------~~~~~ 58 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGH---QVIGIARSAID----D--------F--PGELFACDLADI------EQTAA 58 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEEeCCccc----c--------c--CceEEEeeCCCH------HHHHH
Confidence 367899999999999999999999875 45555432111 0 1 114678999987 65555
Q ss_pred Hhc------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 189 IAK------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 189 l~~------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
+.+ ++|+|||+|+.... .+.+...+++|+.|+.++.+.+... .+..++|++||...++
T Consensus 59 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~ 132 (234)
T PRK07577 59 TLAQINEIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFG 132 (234)
T ss_pred HHHHHHHhCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccC
Confidence 544 68999999997543 2456678899999988887776431 2457999999986543
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.8e-10 Score=110.40 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=85.7
Q ss_pred cCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEcch-----------hHHH--HHHHcCCchhhhccCcEEEEEcc
Q 042694 109 KAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIINAE-----------LFKC--LKQTYGKSYQAFMLSKLVPAVGN 173 (554)
Q Consensus 109 ~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~~~-----------~~~~--l~~~~~~~~~~~~~~kv~~v~GD 173 (554)
++++|||||||| .||.+++++|++.|. +|+++.+. ..+. +..... ....+++.+.+|
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~---~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D 75 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGI---DIFFTYWSPYDKTMPWGMHDKEPVLLKEEIE-----SYGVRCEHMEID 75 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCC---cEEEEcCCccccccccccchhhHHHHHHHHH-----hcCCeEEEEECC
Confidence 578999999996 599999999999875 45555322 1111 111111 123468899999
Q ss_pred CCCCCCCCCHHHHHHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceE
Q 042694 174 VCENNLGLEEDLADVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLF 236 (554)
Q Consensus 174 l~~~~lGLs~~~~~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 236 (554)
++++ ++...++ ..+|+|||+|+.... .+.++..+++|+.|+..+++.+... ....++
T Consensus 76 ~~~~------~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~i 149 (256)
T PRK12748 76 LSQP------YAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRI 149 (256)
T ss_pred CCCH------HHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEE
Confidence 9987 5544433 258999999986432 2356788999999999999888532 134589
Q ss_pred EEEeeceecc
Q 042694 237 VQVSTAYVNG 246 (554)
Q Consensus 237 v~vST~~v~~ 246 (554)
+++||...+.
T Consensus 150 v~~ss~~~~~ 159 (256)
T PRK12748 150 INLTSGQSLG 159 (256)
T ss_pred EEECCccccC
Confidence 9999875543
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-11 Score=112.25 Aligned_cols=253 Identities=17% Similarity=0.182 Sum_probs=161.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+..+||||||-|-||..+...|-. .+.-..|++.+- ++.... ..+.=-++..|+.+. ..+++
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~-~yGs~~VILSDI------~KPp~~-----V~~~GPyIy~DILD~------K~L~e 104 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRY-MYGSECVILSDI------VKPPAN-----VTDVGPYIYLDILDQ------KSLEE 104 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHH-HhCCccEehhhc------cCCchh-----hcccCCchhhhhhcc------ccHHH
Confidence 456899999999999998765544 333335554331 110000 111112356677665 44444
Q ss_pred Hh--cCccEEEEcCCCCCc--hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 189 IA--KEVDVIVNSAANTTF--DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 189 l~--~~vdiViH~AA~v~~--~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
+. ..+|..||..|..+- ..+...+.++|+.|..|++++|+++ +++-| .-||++++|+...
T Consensus 105 IVVn~RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~-kL~iF-VPSTIGAFGPtSP-------------- 168 (366)
T KOG2774|consen 105 IVVNKRIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKH-KLKVF-VPSTIGAFGPTSP-------------- 168 (366)
T ss_pred hhcccccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHc-CeeEe-ecccccccCCCCC--------------
Confidence 44 479999998886543 2355678899999999999999995 77654 4799999987531
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
.+ +.|.+.+.. ....|+-+|.-||-+.|....+.|+..-.+|.+.++++.. |-.|-.|- ...-
T Consensus 169 -RN-------PTPdltIQR------PRTIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~-pgggttdy--a~A~ 231 (366)
T KOG2774|consen 169 -RN-------PTPDLTIQR------PRTIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATK-PGGGTTDY--AIAI 231 (366)
T ss_pred -CC-------CCCCeeeec------CceeechhHHHHHHHHHHHHhhcCccceecccCcccccCC-CCCCcchh--HHHH
Confidence 00 001111110 0015777888999999988888899999999888877433 22222221 1111
Q ss_pred eeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHh
Q 042694 345 IILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHY 418 (554)
Q Consensus 345 i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~ 418 (554)
.-.+..+|... .+-.|+....+++..||-.+++..+..+.. .-..++||+++- ..|-+|+++.+.+..
T Consensus 232 f~~Al~~gk~t-Cylrpdtrlpmmy~~dc~~~~~~~~~a~~~--~lkrr~ynvt~~---sftpee~~~~~~~~~ 299 (366)
T KOG2774|consen 232 FYDALQKGKHT-CYLRPDTRLPMMYDTDCMASVIQLLAADSQ--SLKRRTYNVTGF---SFTPEEIADAIRRVM 299 (366)
T ss_pred HHHHHHcCCcc-cccCCCccCceeehHHHHHHHHHHHhCCHH--Hhhhheeeecee---ccCHHHHHHHHHhhC
Confidence 11122345553 335688899999999999999887765433 223589999885 788899988887654
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-10 Score=111.06 Aligned_cols=127 Identities=13% Similarity=0.223 Sum_probs=88.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+++||||+|.||+.++++|++.|.+ |+++.+. ..+.+.+.... .....++..+.+|++++ ++
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~---v~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~~~Dl~~~------~~ 74 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGAD---VLIVARDADALAQARDELAE---EFPEREVHGLAADVSDD------ED 74 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHh---hCCCCeEEEEECCCCCH------HH
Confidence 46899999999999999999999998864 4544322 12222221111 00124788999999987 55
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~ 246 (554)
...+.+ .+|+|||+|+.... .+.++..+.+|+.|+..+++.+.. + .+..+++++||.....
T Consensus 75 ~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~ 152 (257)
T PRK09242 75 RRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT 152 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC
Confidence 544433 68999999986321 356788999999999999988753 1 2456899999976544
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-10 Score=110.20 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=87.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+++||||||+||+++++.|++.+. +|+++++..-. .. ...++..+.+|++++ ++.+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~---~v~~~~r~~~~---~~--------~~~~~~~~~~D~~~~------~~~~ 63 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA---TVVVCGRRAPE---TV--------DGRPAEFHAADVRDP------DQVA 63 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCChhh---hh--------cCCceEEEEccCCCH------HHHH
Confidence 4679999999999999999999998775 45555433211 11 234678899999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeeceec
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~~v~ 245 (554)
.+++ ++|+|||+|+.... .+.++..+++|+.|+..+++.+.. + .+..++|++||....
T Consensus 64 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~ 139 (252)
T PRK07856 64 ALVDAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGR 139 (252)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccC
Confidence 5554 46999999986432 245678899999999999998864 2 123589999997553
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.7e-10 Score=110.37 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=87.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+++||||+|.||+.++++|++.|.+ |++.++ ...+.+.+.... ....++.++.+|++++ ++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~Dv~~~------~~ 72 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGAD---VILLSRNEENLKKAREKIKS----ESNVDVSYIVADLTKR------ED 72 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHh----hcCCceEEEEecCCCH------HH
Confidence 46889999999999999999999998864 454433 222222222111 0134688999999988 66
Q ss_pred HHHHhc------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceec
Q 042694 186 ADVIAK------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~ 245 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. + .+..++|++||....
T Consensus 73 i~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~ 148 (263)
T PRK08339 73 LERTVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIK 148 (263)
T ss_pred HHHHHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCcccc
Confidence 665554 58999999986432 256788899999887776665542 1 244689999998653
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.3e-10 Score=111.21 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=86.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|++|||||||+||+++++.|++.|. +|+++.+. ..+.+.+.... ...++.++.+|++++ ++.
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~---~vi~~~r~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~~ 69 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA---YVLAVDIAEAVSETVDKIKS-----NGGKAKAYHVDISDE------QQV 69 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCcHHHHHHHHHHHh-----cCCeEEEEEeecCCH------HHH
Confidence 4678999999999999999999999876 45555433 11222222111 234688999999987 665
Q ss_pred HHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceec
Q 042694 187 DVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVN 245 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~ 245 (554)
..+.+ .+|++||+|+.... .+.++..+++|+.|+..+++.+... .+-.++|++||....
T Consensus 70 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 145 (272)
T PRK08589 70 KDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQ 145 (272)
T ss_pred HHHHHHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhc
Confidence 55443 58999999986431 2356788899999998887776542 112589999987543
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-10 Score=110.23 Aligned_cols=125 Identities=16% Similarity=0.187 Sum_probs=87.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++++||||+|+||++++++|++.+. +|+++++.. +++.+.... . .....++..+++|++++ +..+
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~---~vv~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~Dl~~~------~~~~ 75 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA---TIVFNDINQ-ELVDKGLAA-Y-RELGIEAHGYVCDVTDE------DGVQ 75 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCH-HHHHHHHHH-H-HhcCCceEEEEcCCCCH------HHHH
Confidence 3578999999999999999999998775 455554321 222211110 0 00134688999999987 6655
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeecee
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v 244 (554)
.+.+ .+|+|||+||.... .+.++...++|+.|+..+.+.+.. + .+..++|++||...
T Consensus 76 ~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~ 149 (265)
T PRK07097 76 AMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMS 149 (265)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccc
Confidence 5543 48999999997542 346778899999999988877653 1 24568999998643
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=110.47 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=82.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++||||||||++|+++++.|++.|. +|+++.+. ..+.+.+... ...++..+.+|+.++ +..
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~------~~~ 68 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA---QVCINSRNENKLKRMKKTLS------KYGNIHYVVGDVSST------ESA 68 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHH------hcCCeEEEECCCCCH------HHH
Confidence 578999999999999999999998876 45555432 1222212111 123678899999987 555
Q ss_pred HHHh-------cCccEEEEcCCCCCc-----hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeece
Q 042694 187 DVIA-------KEVDVIVNSAANTTF-----DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAY 243 (554)
Q Consensus 187 ~~l~-------~~vdiViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~ 243 (554)
..+. ..+|.++|+++.... .+.++..++.|+.++..+++.+..+ .+-.+++++||..
T Consensus 69 ~~~~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~ 138 (238)
T PRK05786 69 RNVIEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMS 138 (238)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecch
Confidence 4443 347999999985321 2346677899999998888887653 1224789888864
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-10 Score=107.80 Aligned_cols=119 Identities=16% Similarity=0.073 Sum_probs=85.0
Q ss_pred EEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc--
Q 042694 114 FVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK-- 191 (554)
Q Consensus 114 lITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~-- 191 (554)
+||||||+||+.++++|++.+. +|+++.+.. +++...... .. ...++.++.+|++++ +++..+.+
T Consensus 1 lItGas~~iG~~~a~~l~~~G~---~v~~~~r~~-~~~~~~~~~--~~-~~~~~~~~~~Dl~~~------~~~~~~~~~~ 67 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGA---RVTIASRSR-DRLAAAARA--LG-GGAPVRTAALDITDE------AAVDAFFAEA 67 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHHH--Hh-cCCceEEEEccCCCH------HHHHHHHHhc
Confidence 6999999999999999999876 455444321 122211100 00 124678899999988 77777665
Q ss_pred -CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecc
Q 042694 192 -EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 192 -~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~ 246 (554)
.+|++||+|+.... .+..+..+++|+.++..++++.. +.+..++|++||...+.
T Consensus 68 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~-~~~~g~iv~~ss~~~~~ 129 (230)
T PRK07041 68 GPFDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAAR-IAPGGSLTFVSGFAAVR 129 (230)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhh-hcCCeEEEEECchhhcC
Confidence 48999999986432 24677889999999999999554 35668999999886644
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-09 Score=106.87 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=81.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||+|+||++++++|++.+. +|+++.+.. .+.+.+.... ....++..+.+|+++.. .+.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~---~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~D~~~~~----~~~ 72 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA---TVILVARHQKKLEKVYDAIVE----AGHPEPFAIRFDLMSAE----EKE 72 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCChHHHHHHHHHHHH----cCCCCcceEEeeecccc----hHH
Confidence 4578999999999999999999999776 455554321 1222111100 01224567888987531 122
Q ss_pred HHHHh--------cCccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeece
Q 042694 186 ADVIA--------KEVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAY 243 (554)
Q Consensus 186 ~~~l~--------~~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~ 243 (554)
...+. .++|+|||+|+... + .+.+...+++|+.|+..+++.+... .+-.+++++||..
T Consensus 73 ~~~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~ 149 (239)
T PRK08703 73 FEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESH 149 (239)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccc
Confidence 32221 46899999999632 1 2456778999999999888887542 1345889988853
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.2e-10 Score=110.47 Aligned_cols=122 Identities=17% Similarity=0.131 Sum_probs=82.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+++||||+|+||.++++.|++.+. +|+++.+.. +++++.... ......++..+.+|++++ +....+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~-~~~~~~~~~--l~~~~~~~~~~~~Dl~~~------~~i~~~~ 68 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF---AVAVADLNE-ETAKETAKE--INQAGGKAVAYKLDVSDK------DQVFSAI 68 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHHH--HHhcCCeEEEEEcCCCCH------HHHHHHH
Confidence 5799999999999999999998775 455554321 111111100 000234688899999988 6555543
Q ss_pred c-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH----cCCCceEEEEeecee
Q 042694 191 K-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ----CNKLKLFVQVSTAYV 244 (554)
Q Consensus 191 ~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~----~~~~k~~v~vST~~v 244 (554)
+ .+|+|||+|+.... .+.++..+++|+.++..+++.+.. .+...+++++||...
T Consensus 69 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~ 140 (254)
T TIGR02415 69 DQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAG 140 (254)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhh
Confidence 2 57999999987432 245678899999999888776643 112358999998644
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.3e-10 Score=109.49 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=84.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++++||||||+||++++++|++.|. +|+++++.. +.+.+.... ...++..+.+|++++ +..+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~-~~~~~l~~~-----~~~~~~~~~~D~~~~------~~~~~ 68 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA---RVAVLDKSA-AGLQELEAA-----HGDAVVGVEGDVRSL------DDHKE 68 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHhh-----cCCceEEEEeccCCH------HHHHH
Confidence 578999999999999999999999886 455554321 222221110 124678899999986 54444
Q ss_pred Hh-------cCccEEEEcCCCCC----c---h-----hhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeecee
Q 042694 189 IA-------KEVDVIVNSAANTT----F---D-----ERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~-------~~vdiViH~AA~v~----~---~-----~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v 244 (554)
+. .++|++||+|+... + . +.++..+++|+.|+..+++.+... ++-.++|++||...
T Consensus 69 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~ 145 (262)
T TIGR03325 69 AVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAG 145 (262)
T ss_pred HHHHHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccce
Confidence 33 36899999998632 1 1 246788999999999999998652 12246888887644
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.3e-10 Score=110.74 Aligned_cols=124 Identities=20% Similarity=0.282 Sum_probs=84.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH------HHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF------KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~------~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
.++++++||||||+||+++++.|++.+. +|+++.+... ..+.+... .. .....++..+.+|++++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~~~~D~~~~---- 74 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA---NIVIAAKTAEPHPKLPGTIHTAAE-EI-EAAGGQALPLVGDVRDE---- 74 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecccccccchhhHHHHHHH-HH-HhcCCceEEEEecCCCH----
Confidence 3578999999999999999999999876 4444432110 01111100 00 01234688899999998
Q ss_pred CHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeec
Q 042694 182 EEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTA 242 (554)
Q Consensus 182 s~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~ 242 (554)
+....+++ ++|+|||+|+.... .+.++..+++|+.|+..+++++... .+-.+++++||.
T Consensus 75 --~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~ 150 (273)
T PRK08278 75 --DQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPP 150 (273)
T ss_pred --HHHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 66655543 68999999997542 2456788999999999999999742 122467788764
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.8e-10 Score=108.51 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=81.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++++++||||+|.||+++++.|++.+.. +++. ++. ....+...... ...++..+.+|++++ +
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~---vvi~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~------~ 70 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAK---VVINYRSDEEEANDVAEEIKK-----AGGEAIAVKGDVTVE------S 70 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCCHHHHHHHHHHHHH-----cCCeEEEEEecCCCH------H
Confidence 46899999999999999999999998753 3333 211 11222221110 134677899999987 6
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeece
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAY 243 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~ 243 (554)
....+.+ .+|++||+|+.... .+.++..+++|+.++..+++.+ .+.+.-.++|++||..
T Consensus 71 ~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~ 147 (261)
T PRK08936 71 DVVNLIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVH 147 (261)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Confidence 5555443 58999999996432 2456778999998886655543 4322235899999964
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=110.22 Aligned_cols=124 Identities=20% Similarity=0.239 Sum_probs=88.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||.||..+++.|.+.|. +|+++... ..+.+.+..+ ...++..+.+|++++ ++
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~l~~~~~~l~------~~~~~~~~~~Dv~d~------~~ 71 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA---KLALVDLEEAELAALAAELG------GDDRVLTVVADVTDL------AA 71 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhc------CCCcEEEEEecCCCH------HH
Confidence 4689999999999999999999999875 45555432 2222322221 123566778999987 65
Q ss_pred HHHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceecc
Q 042694 186 ADVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~ 246 (554)
.+.+. ..+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+..++|++||...+.
T Consensus 72 v~~~~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~ 148 (296)
T PRK05872 72 MQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA 148 (296)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC
Confidence 55543 368999999997542 2467788999999999999988642 1235899999976543
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=108.54 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=85.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++|+||||+|+||+++++.|++.+.+ |++++.... . . ...++..+.+|++++ +..+
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~---v~~~~~~~~-~----~-------~~~~~~~~~~D~~~~------~~~~ 65 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGAN---VVNADIHGG-D----G-------QHENYQFVPTDVSSA------EEVN 65 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCcc-c----c-------ccCceEEEEccCCCH------HHHH
Confidence 46789999999999999999999998864 444332110 0 0 123678899999987 6665
Q ss_pred HHhc-------CccEEEEcCCCCC----------------chhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEee
Q 042694 188 VIAK-------EVDVIVNSAANTT----------------FDERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVST 241 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~----------------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST 241 (554)
.+.+ .+|+|||+|+... -.+.++..+++|+.|+..+++++... .+..++|++||
T Consensus 66 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 145 (266)
T PRK06171 66 HTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSS 145 (266)
T ss_pred HHHHHHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 5543 5899999998632 12456788999999999999988642 12347999998
Q ss_pred ceec
Q 042694 242 AYVN 245 (554)
Q Consensus 242 ~~v~ 245 (554)
....
T Consensus 146 ~~~~ 149 (266)
T PRK06171 146 EAGL 149 (266)
T ss_pred cccc
Confidence 7553
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-09 Score=98.97 Aligned_cols=207 Identities=16% Similarity=0.117 Sum_probs=133.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhcc-CcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFML-SKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~-~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|.|+|||||+-+|...++.|.+.|. ++++..+. .++|.+...+ .. .++.++.-|+++. +..
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~---~vvl~aRR-~drL~~la~~-----~~~~~~~~~~~DVtD~------~~~ 68 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGA---KVVLAARR-EERLEALADE-----IGAGAALALALDVTDR------AAV 68 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCC---eEEEEecc-HHHHHHHHHh-----hccCceEEEeeccCCH------HHH
Confidence 3568999999999999999999999887 45554332 3444433322 11 4788999999998 553
Q ss_pred HHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 187 DVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 187 ~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
+.+. .++|++||+||...- .+.++.++++|+.|..+..++.... .+--.+|.+||..-.-
T Consensus 69 ~~~i~~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~--- 145 (246)
T COG4221 69 EAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY--- 145 (246)
T ss_pred HHHHHHHHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc---
Confidence 3332 379999999997543 3578999999999999998887531 1334888888864311
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhh---cCCCcEEEEccceeee
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLE---RGDIPVVIIRPSVIES 326 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~---~~glp~~I~Rp~~V~g 326 (554)
+| +... .|..+|+....+.+.... ..+++++.+-||.|-.
T Consensus 146 ------~y-------------------~~~~------------vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~ 188 (246)
T COG4221 146 ------PY-------------------PGGA------------VYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVET 188 (246)
T ss_pred ------cC-------------------CCCc------------cchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecc
Confidence 11 1111 566677766666665542 3589999999999954
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcc
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGM 386 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~ 386 (554)
..- +.+-+. ... ..... --.....+.-+|+|+++..++..+..
T Consensus 189 ~~~---s~v~~~--g~~--------~~~~~----~y~~~~~l~p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 189 TEF---STVRFE--GDD--------ERADK----VYKGGTALTPEDIAEAVLFAATQPQH 231 (246)
T ss_pred eec---ccccCC--chh--------hhHHH----HhccCCCCCHHHHHHHHHHHHhCCCc
Confidence 321 121111 000 00000 00124567789999999998877654
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=104.30 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=115.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc--chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN--AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~--~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++||||||-||..++++|.++|+++ +++. .+..+.+.++... ...-++.+++.||+++ ++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~l---iLvaR~~~kL~~la~~l~~----~~~v~v~vi~~DLs~~------~~ 70 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNL---ILVARREDKLEALAKELED----KTGVEVEVIPADLSDP------EA 70 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEE---EEEeCcHHHHHHHHHHHHH----hhCceEEEEECcCCCh------hH
Confidence 457899999999999999999999998754 4443 2333334333321 1234678999999999 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCch-------hhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTFD-------ERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~~-------~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~ 248 (554)
...+.+ .+|+.|++||...+. +.-++.+++|+.++.+|-++... | .+--.++.++|...+-+.
T Consensus 71 ~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~ 150 (265)
T COG0300 71 LERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPT 150 (265)
T ss_pred HHHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCC
Confidence 666653 699999999986652 45678899999998888776643 2 133479999997664432
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
|....|...+.+.. .++|.|.++.. ..|+.|..+-||-+..
T Consensus 151 ----------------------------p~~avY~ATKa~v~--------~fSeaL~~EL~-~~gV~V~~v~PG~~~T 191 (265)
T COG0300 151 ----------------------------PYMAVYSATKAFVL--------SFSEALREELK-GTGVKVTAVCPGPTRT 191 (265)
T ss_pred ----------------------------cchHHHHHHHHHHH--------HHHHHHHHHhc-CCCeEEEEEecCcccc
Confidence 22222333333322 46777766663 4589999999988843
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.1e-10 Score=123.15 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=84.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+||||||+|+||++++++|++.|. +|++++.. ..+.+.+.... .....++..+.+|++++ ++
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga---~Vvi~~r~~~~~~~~~~~l~~---~~~~~~~~~v~~Dvtd~------~~ 479 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA---HVVLADLNLEAAEAVAAEING---QFGAGRAVALKMDVTDE------QA 479 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEeCCHHHHHHHHHHHHh---hcCCCcEEEEECCCCCH------HH
Confidence 5689999999999999999999998876 45555432 12222221110 00123577899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CC-CceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NK-LKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~-~k~~v~vST~~v 244 (554)
...+++ ++|+|||+|+.... .+.++...++|+.|...+.+.+.. + .+ -.++|++||...
T Consensus 480 v~~a~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a 556 (676)
T TIGR02632 480 VKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNA 556 (676)
T ss_pred HHHHHHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhh
Confidence 666554 68999999996432 235678889999998777655432 1 12 247999998644
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.1e-10 Score=108.84 Aligned_cols=121 Identities=15% Similarity=0.208 Sum_probs=85.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||++++++|++.|.+ |+++++. ..+.+.+.. ..++..+++|++++ +.
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~------~~ 66 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGAR---VAVLERSAEKLASLRQRF--------GDHVLVVEGDVTSY------AD 66 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHh--------CCcceEEEccCCCH------HH
Confidence 46789999999999999999999998764 5555432 222332221 24678899999987 55
Q ss_pred HHHHhc-------CccEEEEcCCCCCch--------h----hHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTFD--------E----RYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~~--------~----~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v 244 (554)
.+.+++ .+|++||+|+..... + .++..+++|+.|+..+++.+... ..-.++|++||...
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~ 146 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSS 146 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhh
Confidence 555443 689999999964311 1 25677889999999999888642 12247999998765
Q ss_pred c
Q 042694 245 N 245 (554)
Q Consensus 245 ~ 245 (554)
+
T Consensus 147 ~ 147 (263)
T PRK06200 147 F 147 (263)
T ss_pred c
Confidence 4
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=106.16 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=84.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++++||||+|+||+++++.|++.+. +|++++.... .. ...++..+.+|++++ -+...
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~---~v~~~~r~~~-------~~-----~~~~~~~~~~D~~~~-----~~~~~ 62 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGA---QVYGVDKQDK-------PD-----LSGNFHFLQLDLSDD-----LEPLF 62 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCC---EEEEEeCCcc-------cc-----cCCcEEEEECChHHH-----HHHHH
Confidence 4578999999999999999999998876 4444443210 00 124678899999875 13333
Q ss_pred HHhcCccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 188 VIAKEVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
.....+|+|||+|+... + .+.++..+++|+.|+.++++.+... .+..+++++||....
T Consensus 63 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 131 (235)
T PRK06550 63 DWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASF 131 (235)
T ss_pred HhhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc
Confidence 33457999999998532 1 2467889999999999999988642 233589999997653
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.7e-10 Score=108.09 Aligned_cols=121 Identities=15% Similarity=0.119 Sum_probs=82.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|+||||||+||+.++++|++.+. +|+++.+..-+.+.+.... ...+++.+.+|++++ ++...+
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~---~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~~~~ 66 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT---HVISISRTENKELTKLAEQ-----YNSNLTFHSLDLQDV------HELETN 66 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC---EEEEEeCCchHHHHHHHhc-----cCCceEEEEecCCCH------HHHHHH
Confidence 36899999999999999999999876 4555544322233322111 234788899999987 666665
Q ss_pred hcCc-----------cEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeecee
Q 042694 190 AKEV-----------DVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYV 244 (554)
Q Consensus 190 ~~~v-----------diViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v 244 (554)
.+++ .++||+||.... .+.+...+++|+.|+..+++.+... ....++|++||..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~ 144 (251)
T PRK06924 67 FNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAA 144 (251)
T ss_pred HHHHHHhcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhh
Confidence 5422 178999987432 2457788899999977777665431 22358999999654
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=107.36 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=85.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++||||+|.||+++++.|++.|.. |+++.+. ..+...+.... .....++..+.+|++++ +.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~------~~ 73 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS---VAICGRDEERLASAEARLRE---KFPGARLLAARCDVLDE------AD 73 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHh---hCCCceEEEEEecCCCH------HH
Confidence 46789999999999999999999998764 4444322 12222222111 00123788899999987 55
Q ss_pred HHHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceec
Q 042694 186 ADVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~ 245 (554)
.+.+. ..+|++||+|+.... .+.+...+++|+.+...+.+.+.. + .+..+++++||....
T Consensus 74 v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 150 (265)
T PRK07062 74 VAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLAL 150 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEecccccc
Confidence 55443 368999999996432 235778889999988777766543 1 234689999997543
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=107.68 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=82.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+++||||||+||..+++.|++.|. +|+++++. ..+...++... .....+..+.+|++++ +..+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~---~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~D~~~~------~~~~~ 67 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA---ELFLTDRDADGLAQTVADARA----LGGTVPEHRALDISDY------DAVAA 67 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh----cCCCcceEEEeeCCCH------HHHHH
Confidence 4799999999999999999998775 34544432 11222111110 0122345678999987 55544
Q ss_pred Hhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeecee
Q 042694 189 IAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~~v 244 (554)
+.+ .+|+|||+|+.... .+.++...++|+.|+..+++.+.. + +...+++++||...
T Consensus 68 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~ 141 (272)
T PRK07832 68 FAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAG 141 (272)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccc
Confidence 443 58999999986432 346788899999999999998753 1 12358999998743
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.6e-10 Score=121.32 Aligned_cols=126 Identities=17% Similarity=0.123 Sum_probs=89.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..+++++||||||+||++++++|.+.|.+ |+++++. ..+.+.+.... ...++..+.+|++++ +.
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~~---v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 378 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGAE---VVASDIDEAAAERTAELIRA-----AGAVAHAYRVDVSDA------DA 378 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHh-----cCCeEEEEEcCCCCH------HH
Confidence 46789999999999999999999998764 5544432 11222211110 123678899999998 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+.++.+.+... .+ -.++|++||...+..
T Consensus 379 ~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~ 458 (582)
T PRK05855 379 MEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAP 458 (582)
T ss_pred HHHHHHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC
Confidence 665554 48999999997542 3467888999999999998876431 11 248999999876543
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-09 Score=100.76 Aligned_cols=104 Identities=15% Similarity=0.299 Sum_probs=77.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+++||||+|.||++++++|.+. . +|+.+.+.. ..+++|++++ +..+.+.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~---~vi~~~r~~--------------------~~~~~D~~~~------~~~~~~~ 50 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H---EVITAGRSS--------------------GDVQVDITDP------ASIRALF 50 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C---cEEEEecCC--------------------CceEecCCCh------HHHHHHH
Confidence 47999999999999999999875 3 555554320 0367899987 6666655
Q ss_pred c---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeecee
Q 042694 191 K---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYV 244 (554)
Q Consensus 191 ~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v 244 (554)
+ ++|+|||+||...+ .+.+...+++|+.|+.++++.+.. +.+-..++++||...
T Consensus 51 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~ 115 (199)
T PRK07578 51 EKVGKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILS 115 (199)
T ss_pred HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEccccc
Confidence 5 79999999996432 245778889999999999998864 223357888887643
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-09 Score=106.01 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=85.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-----------hhHHHHHHHcCCchhhhccCcEEEEEccCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-----------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCE 176 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-----------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~ 176 (554)
.++++++||||+|.||+.++++|++.|.+ |++.+. ...+.+.++... ...++.++.+|+++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~---vii~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~~ 75 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGAR---VVVNDIGVGLDGSASGGSAAQAVVDEIVA-----AGGEAVANGDDIAD 75 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEeeCCccccccccchhHHHHHHHHHHh-----cCCceEEEeCCCCC
Confidence 56899999999999999999999998764 444321 112222221111 23467889999998
Q ss_pred CCCCCCHHHHHHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc--CC-------C
Q 042694 177 NNLGLEEDLADVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC--NK-------L 233 (554)
Q Consensus 177 ~~lGLs~~~~~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~-------~ 233 (554)
+ ++...+. ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+ -
T Consensus 76 ~------~~v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~ 149 (286)
T PRK07791 76 W------DGAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVD 149 (286)
T ss_pred H------HHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 7 5555443 368999999997532 2467889999999999988877531 01 1
Q ss_pred ceEEEEeecee
Q 042694 234 KLFVQVSTAYV 244 (554)
Q Consensus 234 k~~v~vST~~v 244 (554)
.++|++||...
T Consensus 150 g~Iv~isS~~~ 160 (286)
T PRK07791 150 ARIINTSSGAG 160 (286)
T ss_pred cEEEEeCchhh
Confidence 47999998654
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.9e-10 Score=106.85 Aligned_cols=118 Identities=13% Similarity=0.084 Sum_probs=81.5
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
|+||||||+||.++++.|++.+.+ ++++... ..+.+.+.... ...++..+.+|++++ +....+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~---v~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~------~~~~~~ 66 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFE---ICVHYHSGRSDAESVVSAIQA-----QGGNARLLQFDVADR------VACRTL 66 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCCHHHHHHHHHHHHH-----cCCeEEEEEccCCCH------HHHHHH
Confidence 689999999999999999998764 4444321 11122211110 234788999999987 555544
Q ss_pred hc-------CccEEEEcCCCCC-------chhhHHHHHHHhchHHHHHHHHHH-Hc---CCCceEEEEeecee
Q 042694 190 AK-------EVDVIVNSAANTT-------FDERYDIAIDINTRGPCRLMEFAK-QC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 190 ~~-------~vdiViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~-~~---~~~k~~v~vST~~v 244 (554)
.+ .+|++||+|+... ..+.++...++|+.|+..+++.+. .+ .+..++|++||...
T Consensus 67 ~~~~~~~~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~ 139 (239)
T TIGR01831 67 LEADIAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSG 139 (239)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhh
Confidence 33 5799999998643 235678899999999999988652 11 23468999999644
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.6e-10 Score=112.38 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=86.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++||||||+||.+++++|++.|. +|++..+ ...+...++... .....++.++.+|++++ +.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~---~Vil~~R~~~~~~~~~~~l~~---~~~~~~v~~~~~Dl~d~------~s 79 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA---EVILPVRNRAKGEAAVAAIRT---AVPDAKLSLRALDLSSL------AS 79 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHH---hCCCCceEEEEecCCCH------HH
Confidence 4689999999999999999999999875 4554432 211222211110 00123688899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~ 245 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|...+.+++... .+-.++|++||....
T Consensus 80 v~~~~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~ 154 (313)
T PRK05854 80 VAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAAR 154 (313)
T ss_pred HHHHHHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhc
Confidence 655543 58999999997532 1467888999999988877776531 123589999997543
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=107.80 Aligned_cols=123 Identities=14% Similarity=0.079 Sum_probs=82.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc-c--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN-A--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~-~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|+|+||||+|.||++++++|++.|.+ |++.. + +..+.+.+... .....++.++++|++++ +
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~~---v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~------~ 72 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGVN---IAFTYNSNVEEANKIAEDLE----QKYGIKAKAYPLNILEP------E 72 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEcCCCHHHHHHHHHHHH----HhcCCceEEEEcCCCCH------H
Confidence 56899999999999999999999998764 44432 1 11222222111 01234788999999987 6
Q ss_pred HHHHHhc-------CccEEEEcCCCCC---------c----hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEee
Q 042694 185 LADVIAK-------EVDVIVNSAANTT---------F----DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVST 241 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~---------~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST 241 (554)
+.+.+.+ .+|++||+|+... + .+.+...+++|+.+...+.+.+.. + .+-.++|++||
T Consensus 73 ~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS 152 (260)
T PRK08416 73 TYKELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSS 152 (260)
T ss_pred HHHHHHHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEec
Confidence 5555543 5899999997431 1 235667888899887776665543 1 13358999999
Q ss_pred ce
Q 042694 242 AY 243 (554)
Q Consensus 242 ~~ 243 (554)
..
T Consensus 153 ~~ 154 (260)
T PRK08416 153 TG 154 (260)
T ss_pred cc
Confidence 64
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-09 Score=103.26 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=82.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+++++||||||+||+++++.|++.+. +|++++... +.+.+.. ...+..+.+|+++. +..+.+
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~---~v~~~~r~~-~~~~~~~--------~~~~~~~~~D~~~~------~~v~~~ 62 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGW---RVIATARDA-AALAALQ--------ALGAEALALDVADP------ASVAGL 62 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCC---EEEEEECCH-HHHHHHH--------hccceEEEecCCCH------HHHHHH
Confidence 46899999999999999999998775 455554321 1111111 12356789999998 565554
Q ss_pred h---c--CccEEEEcCCCCC---------chhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeece
Q 042694 190 A---K--EVDVIVNSAANTT---------FDERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAY 243 (554)
Q Consensus 190 ~---~--~vdiViH~AA~v~---------~~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~ 243 (554)
. . .+|+|||+|+... ..+.++...++|+.|+..+++.+... .+-.+++++||..
T Consensus 63 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~ 132 (222)
T PRK06953 63 AWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRM 132 (222)
T ss_pred HHHhcCCCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcc
Confidence 3 2 5899999998752 23467889999999999999988752 1224688888864
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=100.64 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=84.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-h-HH---H-HHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-L-FK---C-LKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~-~~---~-l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
++++||||||++|.+++++|++.+.. .|+++.+. . .+ . +++.. ....++..+.+|++++ +
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~--~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~~D~~~~------~ 66 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGAR--HLVLLSRSGPDAPGAAELLAELE------ALGAEVTVVACDVADR------A 66 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCC--eEEEEeCCCCCCccHHHHHHHHH------hcCCeEEEEECCCCCH------H
Confidence 47999999999999999999987643 35544321 1 00 0 11110 0234678899999876 5
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
.+..+.+ .+|.|||+|+.... .+.++...++|+.|+..+++.+++ .+.++++++||...
T Consensus 67 ~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~ii~~ss~~~ 139 (180)
T smart00822 67 ALAAALAAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRD-LPLDFFVLFSSVAG 139 (180)
T ss_pred HHHHHHHHHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhcc-CCcceEEEEccHHH
Confidence 5555433 47999999986432 246788899999999999999977 47789999998654
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=104.95 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=80.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+||||||++|++++++|++.|. +|+++++.. .+.+.+ ..++..+.+|++++ ++.+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~----------~~~~~~~~~D~~d~------~~~~ 61 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGW---QVTATVRGPQQDTALQA----------LPGVHIEKLDMNDP------ASLD 61 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCC---EEEEEeCCCcchHHHHh----------ccccceEEcCCCCH------HHHH
Confidence 36899999999999999999999876 566554321 111111 13567788999987 6665
Q ss_pred HHhc-----CccEEEEcCCCCCc---------hhhHHHHHHHhchHHHHHHHHHHHcC--CCceEEEEeec
Q 042694 188 VIAK-----EVDVIVNSAANTTF---------DERYDIAIDINTRGPCRLMEFAKQCN--KLKLFVQVSTA 242 (554)
Q Consensus 188 ~l~~-----~vdiViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~~~--~~k~~v~vST~ 242 (554)
.+.+ ++|+|||+|+.... .+.+...+.+|+.++..+++.+...- +...++++||.
T Consensus 62 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~ 132 (225)
T PRK08177 62 QLLQRLQGQRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQ 132 (225)
T ss_pred HHHHHhhcCCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccC
Confidence 5554 58999999987532 24567788899999999999886421 12467777764
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=115.93 Aligned_cols=121 Identities=14% Similarity=0.198 Sum_probs=89.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..+|+++||||+|.||..++++|++.|. +|+++++. ..+.+.+.. ..++..+.+|++++ ++
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~------~~ 329 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD---RLLIIDRDAEGAKKLAEAL--------GDEHLSVQADITDE------AA 329 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHh--------CCceeEEEccCCCH------HH
Confidence 4789999999999999999999999876 45555432 222233222 23567789999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v~ 245 (554)
.+.+++ .+|++||+|+... + .+.++..+++|+.|+..+.+.+.. +.+-.++|++||....
T Consensus 330 ~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 405 (520)
T PRK06484 330 VESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASL 405 (520)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhc
Confidence 655543 5899999999752 1 235778899999999999998865 2233589999997554
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-09 Score=109.84 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=79.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+|+||||||+||++++++|.+.|. +|+++++.. +++.+.... ...++..+.+|++++ ++..
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~---~Vi~l~r~~-~~l~~~~~~-----~~~~v~~v~~Dvsd~------~~v~ 240 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGA---KVVALTSNS-DKITLEING-----EDLPVKTLHWQVGQE------AALA 240 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHhh-----cCCCeEEEEeeCCCH------HHHH
Confidence 4689999999999999999999998775 445444321 122221111 112466789999987 7777
Q ss_pred HHhcCccEEEEcCCCCCc----hhhHHHHHHHhchHHHHHHHHHHH
Q 042694 188 VIAKEVDVIVNSAANTTF----DERYDIAIDINTRGPCRLMEFAKQ 229 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~ 229 (554)
...+++|++||+||.... .+.++..+++|+.|+.++++.+..
T Consensus 241 ~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp 286 (406)
T PRK07424 241 ELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFT 286 (406)
T ss_pred HHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999986432 246778899999999999999754
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-08 Score=97.69 Aligned_cols=114 Identities=15% Similarity=0.213 Sum_probs=81.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|+||||||+||+.++++|+++++.+ .+....+... +. ....++..+++|++++ +..+.+.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~-~v~~~~~~~~-------~~----~~~~~~~~~~~Dls~~------~~~~~~~ 62 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDA-TVHATYRHHK-------PD----FQHDNVQWHALDVTDE------AEIKQLS 62 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCC-EEEEEccCCc-------cc----cccCceEEEEecCCCH------HHHHHHH
Confidence 579999999999999999999987655 4544332110 00 1134778899999988 5544443
Q ss_pred ---cCccEEEEcCCCCCc-------------hhhHHHHHHHhchHHHHHHHHHHH-cC--CCceEEEEeec
Q 042694 191 ---KEVDVIVNSAANTTF-------------DERYDIAIDINTRGPCRLMEFAKQ-CN--KLKLFVQVSTA 242 (554)
Q Consensus 191 ---~~vdiViH~AA~v~~-------------~~~~~~~~~~Nv~gt~~ll~la~~-~~--~~k~~v~vST~ 242 (554)
.++|+|||+||.... .+.+.....+|+.|+..+.+.+.. +. +..+++++||.
T Consensus 63 ~~~~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~ 133 (235)
T PRK09009 63 EQFTQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAK 133 (235)
T ss_pred HhcCCCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeec
Confidence 479999999997632 134667889999999988888765 21 23578888863
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-09 Score=102.64 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=84.3
Q ss_pred hccCcEEEEeccccc-ccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 107 FLKAKNFFVTGATGF-LAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 107 ~~~~~~VlITGaTGF-lG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
..++++++||||+|+ ||+.+++.|++.|.. |++.+.. ..+...+.... .....++..+++|++++
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~---V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~------ 81 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR---VVISDIHERRLGETADELAA---ELGLGRVEAVVCDVTSE------ 81 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHH---hcCCceEEEEEccCCCH------
Confidence 356799999999985 999999999998764 5554432 11122111110 00124688899999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeece
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAY 243 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~ 243 (554)
+..+.+.+ .+|+|||+|+.... .+.+...+++|+.|+..+++.+... .+ -..++++||..
T Consensus 82 ~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~ 159 (262)
T PRK07831 82 AQVDALIDAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVL 159 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchh
Confidence 66655543 68999999996421 2467788899999999988887542 11 34778877754
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=100.46 Aligned_cols=123 Identities=19% Similarity=0.134 Sum_probs=83.2
Q ss_pred ccCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEcch----------hHH---HHHHHcCCchhhhccCcEEEEEc
Q 042694 108 LKAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIINAE----------LFK---CLKQTYGKSYQAFMLSKLVPAVG 172 (554)
Q Consensus 108 ~~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~~~----------~~~---~l~~~~~~~~~~~~~~kv~~v~G 172 (554)
+++|+|+|||||| .||++++++|++.|.. |++.... ..+ .+.+... ....++..+++
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~---vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~ 75 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGAD---IFFTYWTAYDKEMPWGVDQDEQIQLQEELL-----KNGVKVSSMEL 75 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCe---EEEEecccccccccccccHHHHHHHHHHHH-----hcCCeEEEEEc
Confidence 5689999999995 7999999999998764 4443210 011 1111111 12347888999
Q ss_pred cCCCCCCCCCHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHH-Hc--CCCce
Q 042694 173 NVCENNLGLEEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAK-QC--NKLKL 235 (554)
Q Consensus 173 Dl~~~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~-~~--~~~k~ 235 (554)
|++++ ++...+.+ .+|+|||+|+.... .+.++..+++|+.|...+.+.+. .+ .+-.+
T Consensus 76 D~~~~------~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~ 149 (256)
T PRK12859 76 DLTQN------DAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGR 149 (256)
T ss_pred CCCCH------HHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeE
Confidence 99987 66555543 48999999997542 23567789999999888865443 22 12358
Q ss_pred EEEEeecee
Q 042694 236 FVQVSTAYV 244 (554)
Q Consensus 236 ~v~vST~~v 244 (554)
+|++||...
T Consensus 150 iv~isS~~~ 158 (256)
T PRK12859 150 IINMTSGQF 158 (256)
T ss_pred EEEEccccc
Confidence 999999754
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-09 Score=105.63 Aligned_cols=126 Identities=14% Similarity=0.242 Sum_probs=83.4
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.|+.++||||||.||++++++|++.|.+ |+++++ +..+.+.++... .....++..+.+|+++. + ++..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~---Vil~~R~~~~l~~~~~~l~~---~~~~~~~~~~~~Dl~~~-~---~~~~ 121 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLN---LVLVARNPDKLKDVSDSIQS---KYSKTQIKTVVVDFSGD-I---DEGV 121 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHH---HCCCcEEEEEEEECCCC-c---HHHH
Confidence 3789999999999999999999998864 444432 222222222111 00123677888999842 1 2333
Q ss_pred HHHh---c--CccEEEEcCCCCC-----c----hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeecee
Q 042694 187 DVIA---K--EVDVIVNSAANTT-----F----DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYV 244 (554)
Q Consensus 187 ~~l~---~--~vdiViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v 244 (554)
+.+. . ++|++||+||... + .+.++..+++|+.|+..+.+.+.. + .+..++|++||...
T Consensus 122 ~~l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~ 196 (320)
T PLN02780 122 KRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAA 196 (320)
T ss_pred HHHHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhh
Confidence 3333 3 4669999998642 2 235678899999999999988753 1 24568999999755
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-09 Score=101.47 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=80.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
++++||||+|.||+++++.|++.+. +|++..+.. +++.+.... .++..+.+|++++ ++++.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~---~v~~~~r~~-~~~~~~~~~-------~~~~~~~~D~~~~------~~v~~~~ 63 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH---KVTLVGARR-DDLEVAAKE-------LDVDAIVCDNTDP------ASLEEAR 63 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHHh-------ccCcEEecCCCCH------HHHHHHH
Confidence 3699999999999999999998776 445444321 222221110 1345788999987 6666555
Q ss_pred c----CccEEEEcCCCC---------Cc---hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeece
Q 042694 191 K----EVDVIVNSAANT---------TF---DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAY 243 (554)
Q Consensus 191 ~----~vdiViH~AA~v---------~~---~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~ 243 (554)
+ .+|++||+|+.. .+ .+.++..+++|+.|+..+++.+.. +.+-.++|++||..
T Consensus 64 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~ 133 (223)
T PRK05884 64 GLFPHHLDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN 133 (223)
T ss_pred HHHhhcCcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC
Confidence 3 689999998741 11 246788899999999999998864 22225899998853
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.4e-09 Score=106.19 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=85.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhC-CCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTV-PDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+++++||||||.||.+++++|++.| . +|++..+. ..+.+.+.... ...++..+.+|++++ +..
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~---~V~l~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~------~~v 68 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW---HVIMACRDFLKAEQAAKSLGM-----PKDSYTIMHLDLGSL------DSV 68 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC---EEEEEeCCHHHHHHHHHHhcC-----CCCeEEEEEcCCCCH------HHH
Confidence 5789999999999999999999887 4 45554322 12222222211 124677899999987 555
Q ss_pred HHHh-------cCccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHH-c---C-CCceEEEEeeceecc
Q 042694 187 DVIA-------KEVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQ-C---N-KLKLFVQVSTAYVNG 246 (554)
Q Consensus 187 ~~l~-------~~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~-~---~-~~k~~v~vST~~v~~ 246 (554)
+.+. ..+|++||+||.... .+.++..+++|+.|+..+.+.+.. + + +..++|++||...+.
T Consensus 69 ~~~~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~ 148 (314)
T TIGR01289 69 RQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNT 148 (314)
T ss_pred HHHHHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCcccc
Confidence 4443 359999999996421 246778899999998888776643 1 1 135899999987654
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.6e-09 Score=103.51 Aligned_cols=119 Identities=12% Similarity=0.118 Sum_probs=83.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+++|||| |+||+++++.|. .+. +|+++++.. .+.+.+.... ...++.++.+|++++ +..+
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~---~Vv~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~------~~i~ 65 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGK---KVLLADYNEENLEAAAKTLRE-----AGFDVSTQEVDVSSR------ESVK 65 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCC---EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEEeecCCH------HHHH
Confidence 468999998 689999999996 564 566554321 1222221111 124688899999987 6555
Q ss_pred HHhc------CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeecee
Q 042694 188 VIAK------EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~------~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v 244 (554)
.+.+ .+|++||+||.....+.++..+++|+.|+..+++.+... ..-.+.+++||...
T Consensus 66 ~~~~~~~~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~ 129 (275)
T PRK06940 66 ALAATAQTLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSG 129 (275)
T ss_pred HHHHHHHhcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEeccc
Confidence 5543 599999999986666778899999999999999988642 12235677777644
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.7e-09 Score=100.35 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=77.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++++||||+|+||++++++|++.|. +|+++++...+....... .....+.+|+++. ++..
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G~---~Vi~~~r~~~~~~~~~~~--------~~~~~~~~D~~~~------~~~~ 74 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKGA---KVIGLTHSKINNSESNDE--------SPNEWIKWECGKE------ESLD 74 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEECCchhhhhhhcc--------CCCeEEEeeCCCH------HHHH
Confidence 5789999999999999999999999876 455444322122211110 1125678999887 6777
Q ss_pred HHhcCccEEEEcCCCCCc----hhhHHHHHHHhchHHHHHHHHHHH
Q 042694 188 VIAKEVDVIVNSAANTTF----DERYDIAIDINTRGPCRLMEFAKQ 229 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~ 229 (554)
....++|++||+||.... .+.++..+++|+.|+.++++.+..
T Consensus 75 ~~~~~iDilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 120 (245)
T PRK12367 75 KQLASLDVLILNHGINPGGRQDPENINKALEINALSSWRLLELFED 120 (245)
T ss_pred HhcCCCCEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777889999999986432 356788999999999999998764
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-08 Score=99.10 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=85.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||.||+.+++.|++.|. +|+++.+. ..+.+.+.... ....++..+.+|++++ +.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~D~~~~------~~ 71 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC---HLHLVARDADALEALAADLRA----AHGVDVAVHALDLSSP------EA 71 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHh----hcCCceEEEEecCCCH------HH
Confidence 3578999999999999999999998775 55555432 12222221111 1134688899999987 66
Q ss_pred HHHHhc---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeec
Q 042694 186 ADVIAK---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTA 242 (554)
Q Consensus 186 ~~~l~~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~ 242 (554)
...+.+ .+|++||+|+.... .+.++..+++|+.|...+.+.+.. + .+-.+++++||.
T Consensus 72 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~ 141 (259)
T PRK06125 72 REQLAAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGA 141 (259)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 665554 69999999986431 246788899999999998887642 2 123478888875
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=93.60 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=93.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+++++||.||||-.|+.|++.++++ +...+||.+.+. +.+. +...+++..+..|.++- +++..
T Consensus 17 q~~s~fvlGAtG~~G~~llk~~~E~-~~FSKV~~i~RR-------~~~d---~at~k~v~q~~vDf~Kl------~~~a~ 79 (238)
T KOG4039|consen 17 QNMSGFVLGATGLCGGGLLKHAQEA-PQFSKVYAILRR-------ELPD---PATDKVVAQVEVDFSKL------SQLAT 79 (238)
T ss_pred hccceEEEeccccccHHHHHHHHhc-ccceeEEEEEec-------cCCC---ccccceeeeEEechHHH------HHHHh
Confidence 5688999999999999999999985 577888876432 1111 11334666777888776 77777
Q ss_pred HhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccc
Q 042694 189 IAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~ 247 (554)
-..++|+.|-|-|+.+-....+-++++.-.-...+.++|++ ++++.|+.+||..+...
T Consensus 80 ~~qg~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe-~Gck~fvLvSS~GAd~s 137 (238)
T KOG4039|consen 80 NEQGPDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKE-KGCKTFVLVSSAGADPS 137 (238)
T ss_pred hhcCCceEEEeecccccccccCceEeechHHHHHHHHHHHh-CCCeEEEEEeccCCCcc
Confidence 77899999999999876666666677777777889999998 79999999999877544
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=98.05 Aligned_cols=117 Identities=9% Similarity=0.085 Sum_probs=80.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+++||||+|.||++++++|++.|. +|+++++...+.. +... ..++.++.+|++++ ++.+.+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~-~~~~-------~~~~~~~~~D~~~~------~~~~~~ 64 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ---PVIVSYRTHYPAI-DGLR-------QAGAQCIQADFSTN------AGIMAF 64 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCchhHH-HHHH-------HcCCEEEEcCCCCH------HHHHHH
Confidence 47899999999999999999999876 4454443211111 1110 11356789999987 554443
Q ss_pred h-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC--CceEEEEeece
Q 042694 190 A-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK--LKLFVQVSTAY 243 (554)
Q Consensus 190 ~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~--~k~~v~vST~~ 243 (554)
. ..+|++||+|+.... .+.++...++|+.++..+.+.+... .+ ..+++++||..
T Consensus 65 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~ 137 (236)
T PRK06483 65 IDELKQHTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYV 137 (236)
T ss_pred HHHHHhhCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchh
Confidence 3 258999999986421 3567889999999998887776542 11 34789998854
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=99.56 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=79.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|+||||+|.||+.++++|++.|. +|++.++. ..+.+.+... ...++..+.+|++++ ++.+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~------~~~~~~~~~~Dv~d~------~~~~~ 65 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA---RVVISSRNEENLEKALKELK------EYGEVYAVKADLSDK------DDLKN 65 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHH------hcCCceEEEcCCCCH------HHHHH
Confidence 4799999999999999999999876 45555432 1122222211 113577899999987 66655
Q ss_pred Hh-------cCccEEEEcCCCCC-----c----hhhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeecee
Q 042694 189 IA-------KEVDVIVNSAANTT-----F----DERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~-------~~vdiViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~~v 244 (554)
+. ..+|++||+||... + .+.+.....+|+.++..+.+.+.. + .+..++|++||...
T Consensus 66 ~~~~~~~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~ 141 (259)
T PRK08340 66 LVKEAWELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSV 141 (259)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCccc
Confidence 54 36999999999643 1 124556678898887665544321 1 23458999999755
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-09 Score=97.89 Aligned_cols=262 Identities=17% Similarity=0.157 Sum_probs=156.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHH--HHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFK--CLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~--~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.|..||||-||-=|++|.+-||..+++|..|+ .++..|. |+...+.+.. ...........||+++. .-+.
T Consensus 28 rkvALITGItGQDGSYLaEfLL~KgYeVHGii-RRsSsFNT~RIeHlY~nP~-~h~~~~mkLHYgDmTDs------s~L~ 99 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKGYEVHGII-RRSSSFNTARIEHLYSNPH-THNGASMKLHYGDMTDS------SCLI 99 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCCceeeEEE-eeccccchhhhhhhhcCch-hcccceeEEeeccccch------HHHH
Confidence 35679999999999999999999999884444 4444443 3333232211 11234667789999987 6666
Q ss_pred HHhc--CccEEEEcCCCCC----chhhHHHHHHHhchHHHHHHHHHHHcC--CCceEEEEeeceecccccceeeccccCC
Q 042694 188 VIAK--EVDVIVNSAANTT----FDERYDIAIDINTRGPCRLMEFAKQCN--KLKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 188 ~l~~--~vdiViH~AA~v~----~~~~~~~~~~~Nv~gt~~ll~la~~~~--~~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
.++. +++-|+|+||..+ |+- ++-..++...||.+||++.+.|. +--+|-..||.-.||.. .|.|-.+
T Consensus 100 k~I~~ikPtEiYnLaAQSHVkvSFdl-peYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv----~e~PQsE 174 (376)
T KOG1372|consen 100 KLISTIKPTEVYNLAAQSHVKVSFDL-PEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKV----QEIPQSE 174 (376)
T ss_pred HHHhccCchhhhhhhhhcceEEEeec-ccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccc----cCCCccc
Confidence 6766 7899999999744 433 23344677789999999998873 22478889998888853 2333333
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCC
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGN 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~ 339 (554)
..++.|. ..+ ...|.|+ +|+.-. ..+..++=.| -|+.+- .+.|..|-.--.
T Consensus 175 ~TPFyPR-------------SPY------a~aKmy~--~WivvN----yREAYnmfAc---NGILFN-HESPRRGenFVT 225 (376)
T KOG1372|consen 175 TTPFYPR-------------SPY------AAAKMYG--YWIVVN----YREAYNMFAC---NGILFN-HESPRRGENFVT 225 (376)
T ss_pred CCCCCCC-------------Chh------HHhhhhh--eEEEEE----hHHhhcceee---ccEeec-CCCCccccchhh
Confidence 3332221 111 1111111 111101 1111222111 244443 334433321111
Q ss_pred CCccceeeeecccee-eeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHh
Q 042694 340 RMMDPIILYYGKGQL-TGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHY 418 (554)
Q Consensus 340 ~~~~~i~~~~~~G~~-~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~ 418 (554)
+.....+..+..|.. ....++.+...||-+..|-++||........ +.-|-+.++ ...+.+||++.-....
T Consensus 226 RKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dYVEAMW~mLQ~d~------PdDfViATg--e~hsVrEF~~~aF~~i 297 (376)
T KOG1372|consen 226 RKITRSVAKISLGQQEKIELGNLSALRDWGHAGDYVEAMWLMLQQDS------PDDFVIATG--EQHSVREFCNLAFAEI 297 (376)
T ss_pred HHHHHHHHHhhhcceeeEEecchhhhcccchhHHHHHHHHHHHhcCC------CCceEEecC--CcccHHHHHHHHHHhh
Confidence 112222222333443 2346788899999999999999888765533 356888888 6779999999988887
Q ss_pred ccC
Q 042694 419 SAS 421 (554)
Q Consensus 419 ~~~ 421 (554)
|+.
T Consensus 298 g~~ 300 (376)
T KOG1372|consen 298 GEV 300 (376)
T ss_pred CcE
Confidence 753
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-08 Score=97.49 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=84.7
Q ss_pred ccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+++||||+ +-||+.++++|++.|. +|++..+. ++..+...+ ....++..+++|++++ ++
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~---~Vi~~~r~--~~~~~~~~~----~~~~~~~~~~~Dl~~~------~~ 69 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA---TVIYTYQN--DRMKKSLQK----LVDEEDLLVECDVASD------ES 69 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCC---EEEEecCc--hHHHHHHHh----hccCceeEEeCCCCCH------HH
Confidence 468999999999 6899999999999886 45544332 122221111 1123678899999987 66
Q ss_pred HHHHh-------cCccEEEEcCCCCC-------c----hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeece
Q 042694 186 ADVIA-------KEVDVIVNSAANTT-------F----DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAY 243 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~ 243 (554)
.+.+. .++|++||+|+... + .+.++..+++|+.|+..+.+.+... .+-.+++++||..
T Consensus 70 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~ 146 (252)
T PRK06079 70 IERAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFG 146 (252)
T ss_pred HHHHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccC
Confidence 55543 35899999998642 1 2457888999999999998887642 2225788988754
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=108.24 Aligned_cols=122 Identities=20% Similarity=0.206 Sum_probs=86.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++++++||||+|.||..+++.|.+.+. +|++++.+ .-+.+.+.... -+...+.+|++++ +..
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga---~vi~~~~~~~~~~l~~~~~~-------~~~~~~~~Dv~~~------~~~ 271 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGA---HVVCLDVPAAGEALAAVANR-------VGGTALALDITAP------DAP 271 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCccHHHHHHHHHH-------cCCeEEEEeCCCH------HHH
Confidence 4689999999999999999999998775 55655432 12222221110 1234678899987 555
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
+.+.+ .+|+|||+|+.... .+.++..+++|+.|+.++.+.+... .+-.+||++||....
T Consensus 272 ~~~~~~~~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~ 347 (450)
T PRK08261 272 ARIAEHLAERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGI 347 (450)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhc
Confidence 55443 58999999997542 3567888999999999999998752 122689999987543
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-08 Score=109.14 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=86.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|+++||||++.||..+++.|++.|. +|+++++. .+++.+.... ...++..+.+|++++ ++.+.
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~---~V~~~~r~-~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~~~ 68 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD---QVVVADRN-VERARERADS-----LGPDHHALAMDVSDE------AQIRE 68 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCC-HHHHHHHHHH-----hCCceeEEEeccCCH------HHHHH
Confidence 578999999999999999999999886 45555432 1222221111 123567899999988 66655
Q ss_pred Hhc-------CccEEEEcCCCCC-----c----hhhHHHHHHHhchHHHHHHHHHHHc---CCC-ceEEEEeeceec
Q 042694 189 IAK-------EVDVIVNSAANTT-----F----DERYDIAIDINTRGPCRLMEFAKQC---NKL-KLFVQVSTAYVN 245 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~-k~~v~vST~~v~ 245 (554)
+.+ .+|++||+|+... + .+.++..+++|+.|+..+++.+... .+- .++|++||....
T Consensus 69 ~~~~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~ 145 (520)
T PRK06484 69 GFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGL 145 (520)
T ss_pred HHHHHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccC
Confidence 543 5999999998631 1 2467889999999999999888653 122 389999987543
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=101.03 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=70.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++++||||+|+||++++++|++.|.+ |+++.+ +..+.+.+.... ....++..+.+|++++.-- .+..+
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~---V~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~Dv~d~~~~--~~~~~ 72 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYR---VVLHYHRSAAAASTLAAELNA----RRPNSAVTCQADLSNSATL--FSRCE 72 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCe---EEEEcCCcHHHHHHHHHHHHh----ccCCceEEEEccCCCchhh--HHHHH
Confidence 47999999999999999999998764 454422 122222221110 0123567799999987100 00112
Q ss_pred HHh-------cCccEEEEcCCCCCc--------h----------hhHHHHHHHhchHHHHHHHHHHH
Q 042694 188 VIA-------KEVDVIVNSAANTTF--------D----------ERYDIAIDINTRGPCRLMEFAKQ 229 (554)
Q Consensus 188 ~l~-------~~vdiViH~AA~v~~--------~----------~~~~~~~~~Nv~gt~~ll~la~~ 229 (554)
.+. ..+|+|||+||.... . ..+...+++|+.++..+.+.+..
T Consensus 73 ~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~ 139 (267)
T TIGR02685 73 AIIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQ 139 (267)
T ss_pred HHHHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 222 369999999986421 1 13667899999999999987653
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-08 Score=93.74 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=86.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc--chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN--AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~--~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.+|+.||||||.+-||+.++.++.+++. ++.+.| .+....-.+...+ . .++..+.+|+++. ++
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~---~~vl~Din~~~~~etv~~~~~-----~-g~~~~y~cdis~~------ee 100 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA---KLVLWDINKQGNEETVKEIRK-----I-GEAKAYTCDISDR------EE 100 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC---eEEEEeccccchHHHHHHHHh-----c-CceeEEEecCCCH------HH
Confidence 5789999999999999999999999875 455554 2222222222111 1 2688999999998 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v 244 (554)
...+.+ ++|++|++||.+.. ++..+..+++|+.|.....+.- .+ .+-.++|-++|..-
T Consensus 101 i~~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~-~~~GHIV~IaS~aG 176 (300)
T KOG1201|consen 101 IYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLE-NNNGHIVTIASVAG 176 (300)
T ss_pred HHHHHHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHh-cCCceEEEehhhhc
Confidence 666553 79999999999764 4567899999999976655443 33 24558888888643
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-08 Score=97.81 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=82.6
Q ss_pred cCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 109 KAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 109 ~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
++|+++||||+ +-||+.+++.|++.|.. |++.++. ..+++.+...+ ...+ .++++|++++ +
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~---Vil~~r~~~~~~~~~~~~~~-----~~~~-~~~~~Dv~d~------~ 68 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAE---LAFTYLNEALKKRVEPIAQE-----LGSD-YVYELDVSKP------E 68 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCE---EEEEecCHHHHHHHHHHHHh-----cCCc-eEEEecCCCH------H
Confidence 57899999997 67999999999998864 4444322 11222221111 1123 5689999988 5
Q ss_pred HHHHHh-------cCccEEEEcCCCCC-------c----hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeece
Q 042694 185 LADVIA-------KEVDVIVNSAANTT-------F----DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAY 243 (554)
Q Consensus 185 ~~~~l~-------~~vdiViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~ 243 (554)
..+.+. ..+|++||+|+... + .+.++..+++|+.|+..+.+.+.. +.+-.++|++||..
T Consensus 69 ~v~~~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~ 146 (274)
T PRK08415 69 HFKSLAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLG 146 (274)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCC
Confidence 555544 36899999999642 1 245788999999999999888764 22225899999864
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-08 Score=96.53 Aligned_cols=126 Identities=20% Similarity=0.200 Sum_probs=89.5
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
...+|.|+||||+.-||.+++.+|.+.|-.+ +.+. ..+..+++.++..+.. ..+++.++++|+++. ++
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l--~lvar~~rrl~~v~~~l~~~~---~~~~v~~~~~Dvs~~------~~ 77 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGAKL--VLVARRARRLERVAEELRKLG---SLEKVLVLQLDVSDE------ES 77 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCCce--EEeehhhhhHHHHHHHHHHhC---CcCccEEEeCccCCH------HH
Confidence 3578999999999999999999999987643 2222 2233445533322211 112799999999998 55
Q ss_pred HHHH-------hcCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-C--CCceEEEEeece
Q 042694 186 ADVI-------AKEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-N--KLKLFVQVSTAY 243 (554)
Q Consensus 186 ~~~l-------~~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~--~~k~~v~vST~~ 243 (554)
.... ..++|+.||+||.... .+..+...++|+.|+-.+.+++..+ . +--++|.+||..
T Consensus 78 ~~~~~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSia 152 (282)
T KOG1205|consen 78 VKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIA 152 (282)
T ss_pred HHHHHHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccc
Confidence 5533 3489999999998652 2466788999999999999888642 1 225899999863
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-08 Score=97.53 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=83.2
Q ss_pred ccCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.++|+++||||++ -||+.++++|++.|.+ |++..+. ..+++.+.... ......+++|++++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~---V~~~~r~~~~~~~~~~~~~~------~g~~~~~~~Dv~d~------ 69 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAE---LAFTYQGEALGKRVKPLAES------LGSDFVLPCDVEDI------ 69 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCE---EEEecCchHHHHHHHHHHHh------cCCceEEeCCCCCH------
Confidence 4678999999996 8999999999998864 4444321 11222221110 11234689999987
Q ss_pred HHHHHHh-------cCccEEEEcCCCCC-------c----hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeecee
Q 042694 184 DLADVIA-------KEVDVIVNSAANTT-------F----DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYV 244 (554)
Q Consensus 184 ~~~~~l~-------~~vdiViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v 244 (554)
++.+.+. ..+|++||+|+... + .+.++..+++|+.|+..+.+.+.. +.+-.++|++||...
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~ 149 (271)
T PRK06505 70 ASVDAVFEALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGS 149 (271)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCc
Confidence 6655554 36899999999642 1 246778889999999999887753 222247999988643
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.6e-08 Score=96.12 Aligned_cols=121 Identities=12% Similarity=0.150 Sum_probs=84.3
Q ss_pred hccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCC
Q 042694 107 FLKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLE 182 (554)
Q Consensus 107 ~~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs 182 (554)
..++|+++||||+ +=||..++++|++.|. +|++..+. ..+++.+.... ......+++|++++
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~---~V~l~~r~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~----- 72 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA---ELAFTYQGDALKKRVEPLAAE------LGAFVAGHCDVTDE----- 72 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCchHHHHHHHHHHHh------cCCceEEecCCCCH-----
Confidence 3567999999997 7899999999999886 44544321 12222222111 12345789999987
Q ss_pred HHHHHHHhc-------CccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeec
Q 042694 183 EDLADVIAK-------EVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTA 242 (554)
Q Consensus 183 ~~~~~~l~~-------~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~ 242 (554)
++.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+++.+.. +.+-.++|++||.
T Consensus 73 -~~v~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~ 150 (272)
T PRK08159 73 -ASIDAVFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYY 150 (272)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 66665543 58999999986531 246788999999999999998765 2233588888875
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.4e-08 Score=95.79 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=79.8
Q ss_pred EEEEecccccccHHHHHHHHh----hCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILR----TVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~----~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.|+||||||.||.+++++|++ .+. +|+++.+. ..+.+.++... .....++..+.+|++++ ++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~---~V~~~~r~~~~~~~~~~~l~~---~~~~~~v~~~~~Dl~~~------~~ 69 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS---VLVLSARNDEALRQLKAEIGA---ERSGLRVVRVSLDLGAE------AG 69 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc---EEEEEEcCHHHHHHHHHHHHh---cCCCceEEEEEeccCCH------HH
Confidence 589999999999999999986 343 45555432 22222222110 00123678899999987 66
Q ss_pred HHHHhcC-----------ccEEEEcCCCCC-----c-----hhhHHHHHHHhchHHHHHHHHHHHc-C---C-CceEEEE
Q 042694 186 ADVIAKE-----------VDVIVNSAANTT-----F-----DERYDIAIDINTRGPCRLMEFAKQC-N---K-LKLFVQV 239 (554)
Q Consensus 186 ~~~l~~~-----------vdiViH~AA~v~-----~-----~~~~~~~~~~Nv~gt~~ll~la~~~-~---~-~k~~v~v 239 (554)
.+.+.+. .|++||+||... + .+.++..+++|+.|+..+.+.+... . + ..+++++
T Consensus 70 v~~~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~i 149 (256)
T TIGR01500 70 LEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNI 149 (256)
T ss_pred HHHHHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEE
Confidence 5554431 269999998632 1 2456789999999998888776542 1 1 2479999
Q ss_pred eecee
Q 042694 240 STAYV 244 (554)
Q Consensus 240 ST~~v 244 (554)
||...
T Consensus 150 sS~~~ 154 (256)
T TIGR01500 150 SSLCA 154 (256)
T ss_pred CCHHh
Confidence 99754
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.1e-08 Score=95.31 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=81.6
Q ss_pred ccCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGA--TGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGa--TGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.++|+++|||| ++-||+.++++|++.|.+ |++... ...+.+++.... ......+++|++++
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~---v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~------ 68 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAE---LAFTYVVDKLEERVRKMAAE------LDSELVFRCDVASD------ 68 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCE---EEEEcCcHHHHHHHHHHHhc------cCCceEEECCCCCH------
Confidence 56889999997 668999999999998864 443321 112222222111 12345789999988
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc--------h----hhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeec
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF--------D----ERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTA 242 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~--------~----~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~ 242 (554)
++.+.+.+ .+|++||+||.... . +.++..+++|+.++..+.+.+..+ .+-.++|++||.
T Consensus 69 ~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~ 148 (261)
T PRK08690 69 DEINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYL 148 (261)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccc
Confidence 66665542 69999999997531 1 245677889999998888776532 122478888876
Q ss_pred ee
Q 042694 243 YV 244 (554)
Q Consensus 243 ~v 244 (554)
..
T Consensus 149 ~~ 150 (261)
T PRK08690 149 GA 150 (261)
T ss_pred cc
Confidence 44
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.4e-08 Score=94.58 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=82.9
Q ss_pred ccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.++|+++||||+ +-||+.++++|++.|.+ |++.+.. ..+.+.+... ....+.++++|++++
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~---v~l~~r~~~~~~~~~~~~~------~~~~~~~~~~D~~~~------ 72 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAE---LAVTYLNDKARPYVEPLAE------ELDAPIFLPLDVREP------ 72 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCE---EEEEeCChhhHHHHHHHHH------hhccceEEecCcCCH------
Confidence 468999999998 48999999999998764 4444322 1111222111 112345789999988
Q ss_pred HHHHHHh-------cCccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeece
Q 042694 184 DLADVIA-------KEVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAY 243 (554)
Q Consensus 184 ~~~~~l~-------~~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~ 243 (554)
++.+.+. ..+|++||+|+.... .+.++..+++|+.|+..+.+.+.. +.+-.+++++||..
T Consensus 73 ~~v~~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~ 151 (258)
T PRK07533 73 GQLEAVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYG 151 (258)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 6665554 268999999986421 246788999999999999998754 22224788888753
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-08 Score=90.36 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=92.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch----hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE----LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~----~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
|+|+||||+|=||+.+++.|++++. .+|++..+. ..+.+....+. ...++.++++|++++ ++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~--~~v~~~~r~~~~~~~~~l~~~l~~-----~~~~~~~~~~D~~~~------~~~ 67 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA--RVVILTSRSEDSEGAQELIQELKA-----PGAKITFIECDLSDP------ESI 67 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHHHHHHHHHH-----TTSEEEEEESETTSH------HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc--eEEEEeeecccccccccccccccc-----ccccccccccccccc------ccc
Confidence 6899999999999999999999743 255555432 23333332221 237899999999987 666
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceec
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVN 245 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~ 245 (554)
+.+.+ .+|++||+|+.... .+.++..+++|+.+...+.+++.. .+-..+|++||....
T Consensus 68 ~~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~~~ 139 (167)
T PF00106_consen 68 RALIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIAGV 139 (167)
T ss_dssp HHHHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGGGT
T ss_pred cccccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchhhc
Confidence 66553 79999999998762 356789999999999999999987 577899999997553
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.3e-08 Score=94.26 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=83.0
Q ss_pred ccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEE--cc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCC
Q 042694 108 LKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFII--NA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLG 180 (554)
Q Consensus 108 ~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~--~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lG 180 (554)
.++|+++||||+ +=||+.++++|++.|.+| ++. +. ...+.+.+... ...++.++++|++++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~d~--- 71 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAEL---GITYLPDEKGRFEKKVRELTE------PLNPSLFLPCDVQDD--- 71 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEE---EEEecCcccchHHHHHHHHHh------ccCcceEeecCcCCH---
Confidence 357899999986 689999999999988754 332 11 11122222111 113466889999988
Q ss_pred CCHHHHHHHhc-------CccEEEEcCCCCC-------c----hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEee
Q 042694 181 LEEDLADVIAK-------EVDVIVNSAANTT-------F----DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVST 241 (554)
Q Consensus 181 Ls~~~~~~l~~-------~vdiViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST 241 (554)
+..+.+.+ .+|++||+|+... + .+.++..+++|+.|+..+.+.+.. +.+-.++|++||
T Consensus 72 ---~~v~~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS 148 (258)
T PRK07370 72 ---AQIEETFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTY 148 (258)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 66655442 6899999999642 2 245778899999999999888753 222258999998
Q ss_pred ce
Q 042694 242 AY 243 (554)
Q Consensus 242 ~~ 243 (554)
..
T Consensus 149 ~~ 150 (258)
T PRK07370 149 LG 150 (258)
T ss_pred cc
Confidence 64
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=93.29 Aligned_cols=124 Identities=13% Similarity=0.093 Sum_probs=83.7
Q ss_pred ccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+++|+++||||+ +=||+.++++|++.|.+ |++..+ ...+++.+.... ....++..+.+|++++
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~---v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~Dv~d~------ 71 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAK---LVFTYAGERLEKEVRELADT----LEGQESLLLPCDVTSD------ 71 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE---EEEecCcccchHHHHHHHHH----cCCCceEEEecCCCCH------
Confidence 467899999997 78999999999998864 454432 111222221111 0124678899999988
Q ss_pred HHHHHHh-------cCccEEEEcCCCCC-------c----hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeecee
Q 042694 184 DLADVIA-------KEVDVIVNSAANTT-------F----DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYV 244 (554)
Q Consensus 184 ~~~~~l~-------~~vdiViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v 244 (554)
+..+.+. ..+|++||+|+... + .+.+...+++|+.++..+.+.+.. +.+-.++|++||...
T Consensus 72 ~~v~~~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~ 151 (257)
T PRK08594 72 EEITACFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGG 151 (257)
T ss_pred HHHHHHHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCC
Confidence 6555544 35899999998642 1 134567788999999888877764 222247999998643
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-07 Score=92.02 Aligned_cols=121 Identities=18% Similarity=0.165 Sum_probs=82.2
Q ss_pred ccCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.++|+++||||++ =||+.+++.|++.|.. |++.++. ..+.+.+... ...++.++.+|++++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~---vil~~r~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~------ 68 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAE---LAFTYQNDKLKGRVEEFAA------QLGSDIVLPCDVAED------ 68 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCE---EEEEecchhHHHHHHHHHh------ccCCceEeecCCCCH------
Confidence 4689999999985 7999999999998864 4443321 1111211111 113456789999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc------------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeece
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF------------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAY 243 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~ 243 (554)
++.+.+.+ .+|++||+||.... .+.++..+++|+.|...+.+.+..+ .+-.+++++||..
T Consensus 69 ~~v~~~~~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~ 148 (262)
T PRK07984 69 ASIDAMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLG 148 (262)
T ss_pred HHHHHHHHHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 66665543 58999999986421 2356678899999998888877543 1124788888764
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-07 Score=92.27 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=82.9
Q ss_pred ccCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGA--TGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGa--TGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.++|+|+|||| ++=||..++++|++.|.+ |++... ...+++.+.... . ....++.+|++++
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~---v~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~Dv~d~------ 68 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAE---LAFTYVGDRFKDRITEFAAE-----F-GSDLVFPCDVASD------ 68 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCe---EEEEccchHHHHHHHHHHHh-----c-CCcceeeccCCCH------
Confidence 46789999996 568999999999998864 444321 112222221111 1 1234688999988
Q ss_pred HHHHHHh-------cCccEEEEcCCCCC-------c-----hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeece
Q 042694 184 DLADVIA-------KEVDVIVNSAANTT-------F-----DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAY 243 (554)
Q Consensus 184 ~~~~~l~-------~~vdiViH~AA~v~-------~-----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~ 243 (554)
++.+.+. ..+|++||+|+... + .+.++..+++|+.|+..+.+.+.. +.+-.++|++||..
T Consensus 69 ~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~ 148 (260)
T PRK06997 69 EQIDALFASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLG 148 (260)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 6666554 36999999998742 1 235677899999999999888764 22235799998864
Q ss_pred e
Q 042694 244 V 244 (554)
Q Consensus 244 v 244 (554)
.
T Consensus 149 ~ 149 (260)
T PRK06997 149 A 149 (260)
T ss_pred c
Confidence 3
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=96.01 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=81.1
Q ss_pred EEecccccccHHHHHHHHhhC-CCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 114 FVTGATGFLAKVLIEKILRTV-PDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 114 lITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
+||||||.||..++++|++.+ . +|++..+. ..+.+.+.... ...++..+.+|++++ +..+.+.
T Consensus 1 lITGas~GIG~aia~~l~~~G~~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~d~------~~v~~~~ 66 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKW---HVVMACRDFLKAERAAKSAGM-----PKDSYTVMHLDLASL------DSVRQFV 66 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHhcC-----CCCeEEEEEecCCCH------HHHHHHH
Confidence 599999999999999999987 4 45554332 12222222211 124678889999987 6555444
Q ss_pred c-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHH-c--CC--CceEEEEeeceec
Q 042694 191 K-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQ-C--NK--LKLFVQVSTAYVN 245 (554)
Q Consensus 191 ~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~--~k~~v~vST~~v~ 245 (554)
+ .+|++||+||... + .+.++..+++|+.|+..+.+.+.. + .+ ..++|++||...+
T Consensus 67 ~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~ 141 (308)
T PLN00015 67 DNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGN 141 (308)
T ss_pred HHHHhcCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccc
Confidence 2 5899999999742 1 246788999999998888766543 2 12 3589999997653
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=90.14 Aligned_cols=121 Identities=14% Similarity=0.162 Sum_probs=80.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++||||++=||+.++++|.+.|. +|++..+. ..+.+.+.... ...++..+..|++++ +.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~---~V~~~~r~~~~l~~~~~~i~~-----~~~~~~~~~~D~~~~------~~ 68 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA---TLILCDQDQSALKDTYEQCSA-----LTDNVYSFQLKDFSQ------ES 68 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHHHHh-----cCCCeEEEEccCCCH------HH
Confidence 3578999999999999999999999876 45555432 12222221111 124567788999887 55
Q ss_pred HHHHh-------c-CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeec
Q 042694 186 ADVIA-------K-EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTA 242 (554)
Q Consensus 186 ~~~l~-------~-~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~ 242 (554)
.+.+. . .+|++||+|+... + .+.+.....+|+.++..+++.+.. + ++-..+|++||.
T Consensus 69 ~~~~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~ 145 (227)
T PRK08862 69 IRHLFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISH 145 (227)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 55443 3 6999999997432 1 134566778899888777665542 2 113488999984
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-07 Score=90.86 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=81.6
Q ss_pred ccCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEcch----hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 108 LKAKNFFVTGA--TGFLAKVLIEKILRTVPDVGKIFIINAE----LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 108 ~~~~~VlITGa--TGFlG~~Ll~~LL~~~~~V~~i~~~~~~----~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
.++|+++|||| ++-||..++++|++.|. +|++.+.. ..+.+.+.. ..++.++.+|++++
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~---~v~l~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dv~~~---- 69 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGA---EVVLTGFGRALRLTERIAKRL--------PEPAPVLELDVTNE---- 69 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCC---EEEEecCccchhHHHHHHHhc--------CCCCcEEeCCCCCH----
Confidence 46789999999 78999999999999875 55655421 122222221 23567899999987
Q ss_pred CHHHHHHHh-------cCccEEEEcCCCCC-------c----hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEee
Q 042694 182 EEDLADVIA-------KEVDVIVNSAANTT-------F----DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVST 241 (554)
Q Consensus 182 s~~~~~~l~-------~~vdiViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST 241 (554)
+..+.+. ..+|++||+|+... + .+.++..+++|+.|+..+.+.+.. +.+-.+++++|+
T Consensus 70 --~~i~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~ 146 (256)
T PRK07889 70 --EHLASLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF 146 (256)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence 6555543 36999999998752 2 134567789999999988888764 222246777764
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-07 Score=90.80 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=81.9
Q ss_pred ccCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEcch-h-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIINAE-L-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~~~-~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.++|+++||||++ =||+.+++.|.+.|.+ |++.++. . -+.+++.... . .....+++|++++
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~---v~~~~r~~~~~~~~~~l~~~-----~-g~~~~~~~Dv~~~------ 70 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAE---LWFTYQSEVLEKRVKPLAEE-----I-GCNFVSELDVTNP------ 70 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCE---EEEEeCchHHHHHHHHHHHh-----c-CCceEEEccCCCH------
Confidence 4678999999996 6999999999988764 4443322 1 1122221110 1 1224578999998
Q ss_pred HHHHHHh-------cCccEEEEcCCCCC-------c----hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeecee
Q 042694 184 DLADVIA-------KEVDVIVNSAANTT-------F----DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYV 244 (554)
Q Consensus 184 ~~~~~l~-------~~vdiViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v 244 (554)
++.+.+. ..+|++||+|+... + .+.++..+++|+.|+..+++.+.. +.+-.++|++||...
T Consensus 71 ~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~ 150 (260)
T PRK06603 71 KSISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGA 150 (260)
T ss_pred HHHHHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcc
Confidence 6655554 35999999998642 1 246778899999999999887753 222248999998543
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-07 Score=93.12 Aligned_cols=122 Identities=11% Similarity=0.083 Sum_probs=82.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch------------hHHHHHHHcCCchhhhccCcEEEEEccCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE------------LFKCLKQTYGKSYQAFMLSKLVPAVGNVC 175 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~------------~~~~l~~~~~~~~~~~~~~kv~~v~GDl~ 175 (554)
.++|+++||||++-||..++++|++.|. +|++..+. ..+.+.+.... ...++.++.+|++
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~---~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~ 77 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA---TVYVTGRSTRARRSEYDRPETIEETAELVTA-----AGGRGIAVQVDHL 77 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecccccccccccccchHHHHHHHHHh-----cCCceEEEEcCCC
Confidence 4689999999999999999999999876 44444321 11112111110 1246778999999
Q ss_pred CCCCCCCHHHHHHHhc-------CccEEEEcC-CCC-------Cc----hhhHHHHHHHhchHHHHHHHHHHH-c--CCC
Q 042694 176 ENNLGLEEDLADVIAK-------EVDVIVNSA-ANT-------TF----DERYDIAIDINTRGPCRLMEFAKQ-C--NKL 233 (554)
Q Consensus 176 ~~~lGLs~~~~~~l~~-------~vdiViH~A-A~v-------~~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~ 233 (554)
++ ++.+.+.+ .+|++||+| +.. .+ .+.+...+++|+.|+..+.+.+.. + .+-
T Consensus 78 ~~------~~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~ 151 (305)
T PRK08303 78 VP------EQVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPG 151 (305)
T ss_pred CH------HHHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCC
Confidence 87 66665543 689999999 632 11 134667788999999888877754 2 112
Q ss_pred ceEEEEeece
Q 042694 234 KLFVQVSTAY 243 (554)
Q Consensus 234 k~~v~vST~~ 243 (554)
.++|++||..
T Consensus 152 g~IV~isS~~ 161 (305)
T PRK08303 152 GLVVEITDGT 161 (305)
T ss_pred cEEEEECCcc
Confidence 4799998853
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-07 Score=93.27 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=98.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.+..+|||+||||-+|+.+++.|++++..| .++.++.. ..+..... .........+..|...+ .+...
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~v---ra~VRd~~-~a~~~~~~---~~~d~~~~~v~~~~~~~-----~d~~~ 144 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSV---RALVRDEQ-KAEDLLGV---FFVDLGLQNVEADVVTA-----IDILK 144 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCee---eeeccChh-hhhhhhcc---cccccccceeeeccccc-----cchhh
Confidence 456789999999999999999999998654 33322111 11111000 00112334455555443 13344
Q ss_pred HHhcC----ccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCc
Q 042694 188 VIAKE----VDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSI 263 (554)
Q Consensus 188 ~l~~~----vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~ 263 (554)
.+.+. +.+++-|++...-.++-..-.++...|+++++++|+.. ++++++++|+....-... +
T Consensus 145 ~~~~~~~~~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~a-Gvk~~vlv~si~~~~~~~------~------- 210 (411)
T KOG1203|consen 145 KLVEAVPKGVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKA-GVKRVVLVGSIGGTKFNQ------P------- 210 (411)
T ss_pred hhhhhccccceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHh-CCceEEEEEeecCcccCC------C-------
Confidence 44443 34666666554332211122346678999999999984 999999998875533211 0
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
++. . . ...-...+|.++|...+..|+|.+|+||+...
T Consensus 211 ------------~~~---~---~-------~~~~~~~~k~~~e~~~~~Sgl~ytiIR~g~~~ 247 (411)
T KOG1203|consen 211 ------------PNI---L---L-------LNGLVLKAKLKAEKFLQDSGLPYTIIRPGGLE 247 (411)
T ss_pred ------------chh---h---h-------hhhhhhHHHHhHHHHHHhcCCCcEEEeccccc
Confidence 000 0 0 01112355677787777889999999998763
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-07 Score=86.02 Aligned_cols=119 Identities=13% Similarity=0.217 Sum_probs=82.7
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcch-----hH-HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-----LF-KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-----~~-~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++||||+|-||..+++.|.+++ ..+++++.+. .. +.+++... ...+|.++.+|++++ ++
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~l~~------~g~~v~~~~~Dv~d~------~~ 67 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIRELES------AGARVEYVQCDVTDP------EA 67 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHHHH------TT-EEEEEE--TTSH------HH
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHHHHh------CCCceeeeccCccCH------HH
Confidence 68999999999999999999976 3478877543 11 12221111 245899999999998 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~ 245 (554)
.+.+.+ .++.|||+|+.... .+.++.....-+.|+.+|.++... ..++.|+..||....
T Consensus 68 v~~~~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~-~~l~~~i~~SSis~~ 140 (181)
T PF08659_consen 68 VAAALAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALEN-RPLDFFILFSSISSL 140 (181)
T ss_dssp HHHHHHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTT-TTTSEEEEEEEHHHH
T ss_pred HHHHHHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhc-CCCCeEEEECChhHh
Confidence 777764 57899999987542 245778888899999999999987 589999999998663
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9e-08 Score=88.32 Aligned_cols=208 Identities=15% Similarity=0.053 Sum_probs=125.9
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK 191 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~ 191 (554)
.+++.|+.||.|+++++.-+..+..| ..+.++. ...+. +.....+....||.-.. .-+.....
T Consensus 54 ~tlvlggnpfsgs~vlk~A~~vv~sv--gilsen~-~k~~l--------~sw~~~vswh~gnsfss------n~~k~~l~ 116 (283)
T KOG4288|consen 54 WTLVLGGNPFSGSEVLKNATNVVHSV--GILSENE-NKQTL--------SSWPTYVSWHRGNSFSS------NPNKLKLS 116 (283)
T ss_pred HHhhhcCCCcchHHHHHHHHhhceee--eEeeccc-Ccchh--------hCCCcccchhhcccccc------Ccchhhhc
Confidence 47889999999999999999877655 2222221 11111 12455677777876544 33444456
Q ss_pred CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccccccc
Q 042694 192 EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSN 271 (554)
Q Consensus 192 ~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~ 271 (554)
.+..++-+++-. .+-..+.++|=....+-.++|++ .++++|+|+|...-.-.
T Consensus 117 g~t~v~e~~ggf---gn~~~m~~ing~ani~a~kaa~~-~gv~~fvyISa~d~~~~------------------------ 168 (283)
T KOG4288|consen 117 GPTFVYEMMGGF---GNIILMDRINGTANINAVKAAAK-AGVPRFVYISAHDFGLP------------------------ 168 (283)
T ss_pred CCcccHHHhcCc---cchHHHHHhccHhhHHHHHHHHH-cCCceEEEEEhhhcCCC------------------------
Confidence 777888776642 33456778888888888999998 59999999997532111
Q ss_pred ccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeecc
Q 042694 272 SRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGK 351 (554)
Q Consensus 272 ~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~ 351 (554)
++.. . +|...|..||.-.+ ...++.-+|+|||.+||. .++.|.--.+...+..+.+.-+
T Consensus 169 ------~~i~----r------GY~~gKR~AE~Ell---~~~~~rgiilRPGFiyg~--R~v~g~~~pL~~vg~pl~~~~~ 227 (283)
T KOG4288|consen 169 ------PLIP----R------GYIEGKREAEAELL---KKFRFRGIILRPGFIYGT--RNVGGIKSPLHTVGEPLEMVLK 227 (283)
T ss_pred ------Cccc----h------hhhccchHHHHHHH---HhcCCCceeeccceeecc--cccCcccccHHhhhhhHHHHHH
Confidence 1110 1 45555555554322 234688899999999997 3333322111111111111112
Q ss_pred ce---eeeeecCCCcccccchhhHHHHHHHHHHHHhc
Q 042694 352 GQ---LTGFLVDPNGILDVVPADMVVNATLAAIAQHG 385 (554)
Q Consensus 352 G~---~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~ 385 (554)
+. +..++.-.......|+|++||.+.+.++.++.
T Consensus 228 ~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~ 264 (283)
T KOG4288|consen 228 FALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPD 264 (283)
T ss_pred hhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCC
Confidence 22 22233445667889999999999999887643
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-06 Score=84.21 Aligned_cols=120 Identities=8% Similarity=-0.005 Sum_probs=76.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+++||||++-||+.++++|.+ +. +|++..+. ..+.+.+.... ....++..+.+|++++ +..+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~---~Vil~~r~~~~~~~~~~~l~~----~~~~~~~~~~~Dv~d~------~~v~~ 66 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE---DVVLAARRPEAAQGLASDLRQ----RGATSVHVLSFDAQDL------DTHRE 66 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC---EEEEEeCCHHHHHHHHHHHHh----ccCCceEEEEcccCCH------HHHHH
Confidence 5799999999999999999984 64 55655432 12222222111 0123578899999987 55444
Q ss_pred Hh-------cCccEEEEcCCCCCch-------hhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeecee
Q 042694 189 IA-------KEVDVIVNSAANTTFD-------ERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~-------~~vdiViH~AA~v~~~-------~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~~v 244 (554)
+. ..+|++||+|+..... +...+...+|+.+...+++.+.. + ++-.++|++||...
T Consensus 67 ~~~~~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~ 140 (246)
T PRK05599 67 LVKQTQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAG 140 (246)
T ss_pred HHHHHHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 33 3699999999975321 12345567888888766655421 2 11358999998754
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.4e-07 Score=88.70 Aligned_cols=124 Identities=18% Similarity=0.114 Sum_probs=88.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..+++++|||||.-||...+++|.+.|. +||+..+. .-+..++.... +....++.+++.|+++. +.
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga---~Vv~~~R~~~~~~~~~~~i~~---~~~~~~i~~~~lDLssl------~S 100 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA---HVVLACRNEERGEEAKEQIQK---GKANQKIRVIQLDLSSL------KS 100 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC---EEEEEeCCHHHHHHHHHHHHh---cCCCCceEEEECCCCCH------HH
Confidence 4578999999999999999999999874 56654322 11222222111 22457889999999988 55
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-----hhhHHHHHHHhchHHHHHHHHHH----HcCCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-----DERYDIAIDINTRGPCRLMEFAK----QCNKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~~v~vST~~v 244 (554)
...+++ ..|+.|++||.... .+.++..+++|..|...|.++.. .. ...|+|.|||..-
T Consensus 101 V~~fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s-~~~RIV~vsS~~~ 174 (314)
T KOG1208|consen 101 VRKFAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRS-APSRIVNVSSILG 174 (314)
T ss_pred HHHHHHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhC-CCCCEEEEcCccc
Confidence 555543 68999999997542 24689999999999777766554 32 2269999999754
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.4e-06 Score=82.81 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=82.0
Q ss_pred ccCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEE-cchhHHHHHHHcCCc--------hhhhccCcEEEEEccC--
Q 042694 108 LKAKNFFVTGA--TGFLAKVLIEKILRTVPDVGKIFII-NAELFKCLKQTYGKS--------YQAFMLSKLVPAVGNV-- 174 (554)
Q Consensus 108 ~~~~~VlITGa--TGFlG~~Ll~~LL~~~~~V~~i~~~-~~~~~~~l~~~~~~~--------~~~~~~~kv~~v~GDl-- 174 (554)
++||+++|||| +.-||..+.+.|.+.|.+ |++. +.+..+.+....... ...........+.+|+
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga~---Vv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGAE---ILVGTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCCE---EEEEeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 67999999999 678999999999998864 4442 222222222111100 0000011235688898
Q ss_pred CCCC-C-----------CCCHHHHHHHhc-------CccEEEEcCCCC-----Cc----hhhHHHHHHHhchHHHHHHHH
Q 042694 175 CENN-L-----------GLEEDLADVIAK-------EVDVIVNSAANT-----TF----DERYDIAIDINTRGPCRLMEF 226 (554)
Q Consensus 175 ~~~~-l-----------GLs~~~~~~l~~-------~vdiViH~AA~v-----~~----~~~~~~~~~~Nv~gt~~ll~l 226 (554)
+++. + +-++++.+.+.+ .+|++||+||.. .+ .+.++..+++|+.|+..+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 3331 0 011124444432 589999999632 12 347889999999999999888
Q ss_pred HHH-cCCCceEEEEeecee
Q 042694 227 AKQ-CNKLKLFVQVSTAYV 244 (554)
Q Consensus 227 a~~-~~~~k~~v~vST~~v 244 (554)
+.. +.+--++|++||...
T Consensus 164 ~~p~m~~~G~II~isS~a~ 182 (303)
T PLN02730 164 FGPIMNPGGASISLTYIAS 182 (303)
T ss_pred HHHHHhcCCEEEEEechhh
Confidence 765 222258999998643
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-05 Score=79.08 Aligned_cols=127 Identities=22% Similarity=0.276 Sum_probs=86.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+.+|.++||||+.=||+.++++|.+.|. +|++..+ +..+........ ......++.++.+|++++ ++
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga---~v~i~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dv~~~------~~ 74 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA---KVVITGRSEERLEETAQELGG--LGYTGGKVLAIVCDVSKE------VD 74 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh--cCCCCCeeEEEECcCCCH------HH
Confidence 6789999999999999999999999876 4444433 222222222111 001245789999999977 44
Q ss_pred HHHHh--------cCccEEEEcCCCCCc--------hhhHHHHHHHhchH-HHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 186 ADVIA--------KEVDVIVNSAANTTF--------DERYDIAIDINTRG-PCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~--------~~vdiViH~AA~v~~--------~~~~~~~~~~Nv~g-t~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
.+.+. .++|+++++|+.... .+.|+...++|+.| +..+.+.|..+ .+-..++++||....
T Consensus 75 ~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~ 154 (270)
T KOG0725|consen 75 VEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGV 154 (270)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccc
Confidence 44443 369999999998653 25788999999995 66776666553 133467888876443
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.6e-06 Score=79.16 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=90.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
..+|.|||||+-.=+|..|+.+|.++|..| =.-|+..+..+.++.... .++...++-|++++ +..+
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V-~Agcl~~~gae~L~~~~~-------s~rl~t~~LDVT~~------esi~ 92 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRV-FAGCLTEEGAESLRGETK-------SPRLRTLQLDVTKP------ESVK 92 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCEE-EEEeecCchHHHHhhhhc-------CCcceeEeeccCCH------HHHH
Confidence 457889999999889999999999998754 233777776666766542 46888889999998 7666
Q ss_pred HHhc---------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeec
Q 042694 188 VIAK---------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTA 242 (554)
Q Consensus 188 ~l~~---------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~ 242 (554)
+..+ +.-.|||+||...+ .+.|+...++|..||.++.+.-... +.--|+|+|||.
T Consensus 93 ~a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~ 166 (322)
T KOG1610|consen 93 EAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSV 166 (322)
T ss_pred HHHHHHHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccc
Confidence 6553 46689999996433 3689999999999976665444321 123499999985
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-06 Score=79.58 Aligned_cols=225 Identities=17% Similarity=0.245 Sum_probs=132.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc----hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA----ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~----~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
++||++++|||.|-||..+.++|+..+ ++...+.++ +.+..|++..+ ..++.+++.|+++.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kg--ik~~~i~~~~En~~a~akL~ai~p-------~~~v~F~~~DVt~~------ 67 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKG--IKVLVIDDSEENPEAIAKLQAINP-------SVSVIFIKCDVTNR------ 67 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcC--chheeehhhhhCHHHHHHHhccCC-------CceEEEEEeccccH------
Confidence 468999999999999999999999875 444444432 34555555443 46899999999985
Q ss_pred HHHHHHh-------cCccEEEEcCCCCCchhhHHHHHHHhchHHHH----HHHHHHH-c-CCCceEEEEeeceecccccc
Q 042694 184 DLADVIA-------KEVDVIVNSAANTTFDERYDIAIDINTRGPCR----LMEFAKQ-C-NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 184 ~~~~~l~-------~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~----ll~la~~-~-~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+... ..+|++|+.|+..+ +.+.+..+.+|..|.-+ .+....+ . +.---+|.+||.+ |..+
T Consensus 68 ~~~~~~f~ki~~~fg~iDIlINgAGi~~-dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~--GL~P- 143 (261)
T KOG4169|consen 68 GDLEAAFDKILATFGTIDILINGAGILD-DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVA--GLDP- 143 (261)
T ss_pred HHHHHHHHHHHHHhCceEEEEccccccc-chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecccc--ccCc-
Confidence 4443333 37999999999755 67789999999776444 4444432 1 1223678888753 3211
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh-hcCCCcEEEEccceeeeccc
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL-ERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~-~~~glp~~I~Rp~~V~g~~~ 329 (554)
.|... .|..+|-. ---++..++..+. ++.|+.+..+-||.+--.-.
T Consensus 144 -------------------------~p~~p------VY~AsKaG--VvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~ 190 (261)
T KOG4169|consen 144 -------------------------MPVFP------VYAASKAG--VVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLA 190 (261)
T ss_pred -------------------------cccch------hhhhcccc--eeeeehhhhhhhhHhhcCEEEEEECCCcchHHHH
Confidence 01111 12222100 0024455555443 56799999999998744322
Q ss_pred CCc---cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcc
Q 042694 330 EPF---SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPL 405 (554)
Q Consensus 330 ~p~---~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~i 405 (554)
+.+ -+|.+- ...+ .+.+.. ..--+-..|++.++.+++... ++.+|-+.++..+++
T Consensus 191 ~~~~~~~~~~e~----~~~~----~~~l~~--------~~~q~~~~~a~~~v~aiE~~~-----NGaiw~v~~g~l~~~ 248 (261)
T KOG4169|consen 191 ENIDASGGYLEY----SDSI----KEALER--------APKQSPACCAINIVNAIEYPK-----NGAIWKVDSGSLEPV 248 (261)
T ss_pred HHHHhcCCcccc----cHHH----HHHHHH--------cccCCHHHHHHHHHHHHhhcc-----CCcEEEEecCcEEEe
Confidence 222 222221 0100 111111 123344677888899888733 357888888743333
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-05 Score=71.84 Aligned_cols=178 Identities=19% Similarity=0.207 Sum_probs=114.7
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
..+....+...||||+.-||+.+...|.+.|..| -+.-++....+......+.+ ..-..+.+|++++
T Consensus 8 ~~~r~~sk~~~vtGg~sGIGrAia~~la~~Garv-~v~dl~~~~A~ata~~L~g~------~~h~aF~~DVS~a------ 74 (256)
T KOG1200|consen 8 VVQRLMSKVAAVTGGSSGIGRAIAQLLAKKGARV-AVADLDSAAAEATAGDLGGY------GDHSAFSCDVSKA------ 74 (256)
T ss_pred HHHHHhcceeEEecCCchHHHHHHHHHHhcCcEE-EEeecchhhHHHHHhhcCCC------CccceeeeccCcH------
Confidence 3344567789999999999999999999988765 33333433333322233221 2334689999998
Q ss_pred HHHHHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCC--ceEEEEeecee
Q 042694 184 DLADVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKL--KLFVQVSTAYV 244 (554)
Q Consensus 184 ~~~~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~--k~~v~vST~~v 244 (554)
++.+.+. ..++++++||+..+- .+.+++.+.+|..|+..+-+++.+. .+. -++|.|||.-
T Consensus 75 ~~v~~~l~e~~k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIV- 153 (256)
T KOG1200|consen 75 HDVQNTLEEMEKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIV- 153 (256)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhh-
Confidence 5555432 279999999998763 4689999999999999888877552 122 2899999862
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccC--CCCchHHHHHHHhhhhhcCCCcEEEEccc
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKE--FSTDGEVAQKMKGLGLERGDIPVVIIRPS 322 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~--~~~~k~~ae~l~e~~~~~~glp~~I~Rp~ 322 (554)
|.. |.+.. ..|..+|. -..+|+.++.++. .++++..+-||
T Consensus 154 -Gki-GN~GQ-------------------------------tnYAAsK~GvIgftktaArEla~-----knIrvN~VlPG 195 (256)
T KOG1200|consen 154 -GKI-GNFGQ-------------------------------TNYAASKGGVIGFTKTAARELAR-----KNIRVNVVLPG 195 (256)
T ss_pred -ccc-ccccc-------------------------------hhhhhhcCceeeeeHHHHHHHhh-----cCceEeEeccc
Confidence 211 11111 12333332 2334555554443 48999999999
Q ss_pred eeeecccCCcc
Q 042694 323 VIESTCKEPFS 333 (554)
Q Consensus 323 ~V~g~~~~p~~ 333 (554)
.|-.+..+.+|
T Consensus 196 FI~tpMT~~mp 206 (256)
T KOG1200|consen 196 FIATPMTEAMP 206 (256)
T ss_pred cccChhhhhcC
Confidence 99766555444
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=77.86 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=84.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhcc-CcEEEEEccCCC-CCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFML-SKLVPAVGNVCE-NNLGLE 182 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~-~kv~~v~GDl~~-~~lGLs 182 (554)
..+++||||||++-||+.++++|++.|..| +++.+.. ..+.+.+.... .. ..+.....|+++ +
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dvs~~~----- 70 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARV--VVAARRSEEEAAEALAAAIKE-----AGGGRAAAVAADVSDDE----- 70 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeE--EEEcCCCchhhHHHHHHHHHh-----cCCCcEEEEEecCCCCH-----
Confidence 457899999999999999999999877643 3333321 12222222210 11 467788899997 4
Q ss_pred HHHHHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHcCCCc--eEEEEeeceec
Q 042694 183 EDLADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQCNKLK--LFVQVSTAYVN 245 (554)
Q Consensus 183 ~~~~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k--~~v~vST~~v~ 245 (554)
+..+.+.+ .+|+++|+|+... + .+.++..+++|+.|...+.+++.. ..+ +++.+||....
T Consensus 71 -~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~--~~~~~~Iv~isS~~~~ 147 (251)
T COG1028 71 -ESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALP--LMKKQRIVNISSVAGL 147 (251)
T ss_pred -HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHH--hhhhCeEEEECCchhc
Confidence 44443332 4999999999743 2 257889999999999999984443 344 89999987654
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-07 Score=104.12 Aligned_cols=208 Identities=16% Similarity=0.117 Sum_probs=126.5
Q ss_pred cccccccccCCchhHHHHHHHHHhhhhceee-----ccccceeeCCCC----CCCc----ccccccccccCCCCchhHhh
Q 042694 32 KRSIMHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLVLSPNG----KGHA----EIVVQDLVPFGGQATSLVEL 98 (554)
Q Consensus 32 ~~~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~~~~~~----~~~~----~~~~~~~~~l~~~~~~~~~~ 98 (554)
.++.+||++|||||.|+++...+++++.+.. +..+++.....+ ..+. ..+-..+..-..+.....+.
T Consensus 617 s~d~~fF~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1032)
T KOG1178|consen 617 SPDSSFFQLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIRIKSQEKSSSKLNHKIELKNLKDRTQLSDT 696 (1032)
T ss_pred CCCcchhhhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhhhhhhccchhhhhhhhhhccccchhhHhhh
Confidence 4455999999999999999999999988775 133333211000 0000 00000000000000000000
Q ss_pred hc--------ccchhhhccCcE--EEEecccccccHHHHHHHHhhCC---CccEEEEEcch--hHHHHHHHc--CCc--h
Q 042694 99 QD--------GIGIVKFLKAKN--FFVTGATGFLAKVLIEKILRTVP---DVGKIFIINAE--LFKCLKQTY--GKS--Y 159 (554)
Q Consensus 99 ~~--------~~~i~~~~~~~~--VlITGaTGFlG~~Ll~~LL~~~~---~V~~i~~~~~~--~~~~l~~~~--~~~--~ 159 (554)
.+ .....+...+++ +++||.+||+|+..++.++.... .+.....++.. .....+... ..+ +
T Consensus 697 i~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~~~~~~~a~~e~a~~~~~~~~i~~~~~~ 776 (1032)
T KOG1178|consen 697 IPKSSPLPLNLSIEVKKSELLTAYVFLTGYTGYLGRRKLSNLVKLSNFFYIILVFALVRASSEEASGGRLQDAIQIYGVL 776 (1032)
T ss_pred ccccccCCCCCccccccccccccceeeeeccceehhhhhhhhhhhhhhhheeeeEEEeccCCchhhccchhchhhhhhhc
Confidence 00 000111112333 89999999999999999987543 12111222221 111111111 110 1
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
.+...-++..+.++++....|+....+..+.++++.++|+++.++...++.+....|+.+|.+.+.++... .+.+..+
T Consensus 777 ~e~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~v~~~t~~~~~~~~~~~~~~~l~~~l--~~~~~~~ 854 (1032)
T KOG1178|consen 777 NEELLINIIVHLIDLSKSLFGLEDTLWNKLQEPVSIVIHNGALVHEVLRYTELRYPNVIGTITVLPLYSFL--KKKPKDI 854 (1032)
T ss_pred cccccceeeeehhhhhhhhhcccchhhhccccCcceecccccceeeechhhccCCceeeeeeeeeeeeccc--cccceeE
Confidence 22344578889999999999999999999999999999999999999999999999999999999998863 3344444
Q ss_pred ee
Q 042694 240 ST 241 (554)
Q Consensus 240 ST 241 (554)
|+
T Consensus 855 s~ 856 (1032)
T KOG1178|consen 855 SL 856 (1032)
T ss_pred Ee
Confidence 44
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.9e-05 Score=70.93 Aligned_cols=123 Identities=17% Similarity=0.215 Sum_probs=85.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.|.+||||||+.-||..|.+++++.|..| |+|=++ .++|.+... ....+....+|+.+. +.+++
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN~V--Ii~gR~--e~~L~e~~~------~~p~~~t~v~Dv~d~------~~~~~ 67 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGNTV--IICGRN--EERLAEAKA------ENPEIHTEVCDVADR------DSRRE 67 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCCEE--EEecCc--HHHHHHHHh------cCcchheeeecccch------hhHHH
Confidence 47799999999999999999999988654 555444 234444332 133566778898876 54444
Q ss_pred Hh----c---CccEEEEcCCCCC---ch------hhHHHHHHHhchHHHHHHHHHHHc--CC-CceEEEEeeceeccc
Q 042694 189 IA----K---EVDVIVNSAANTT---FD------ERYDIAIDINTRGPCRLMEFAKQC--NK-LKLFVQVSTAYVNGQ 247 (554)
Q Consensus 189 l~----~---~vdiViH~AA~v~---~~------~~~~~~~~~Nv~gt~~ll~la~~~--~~-~k~~v~vST~~v~~~ 247 (554)
+. + +.+++|++||..+ |. +..++-+.+|..++.+|..+...+ .+ -..+|.|||.-.+-+
T Consensus 68 lvewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvP 145 (245)
T COG3967 68 LVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVP 145 (245)
T ss_pred HHHHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCc
Confidence 43 2 7999999999854 21 234567889999999888776542 12 347899999655443
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=74.12 Aligned_cols=124 Identities=9% Similarity=0.027 Sum_probs=77.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++++.++||||+|.||..+++.|++.+. +|++.+.. ..+...+.... ...+..++.+|++++ ++
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~---~V~l~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~------~~ 79 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGA---KVIVTDIDQESGQATVEEITN-----LGGEALFVSYDMEKQ------GD 79 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 5789999999999999999999998775 55655532 11111111110 123566789999887 55
Q ss_pred HHHHh-------cCccEEEEcCCCCCc----hh-hHHHHHHHhchHHHHHHHHHHHc----------CCCceEEEEeece
Q 042694 186 ADVIA-------KEVDVIVNSAANTTF----DE-RYDIAIDINTRGPCRLMEFAKQC----------NKLKLFVQVSTAY 243 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~~----~~-~~~~~~~~Nv~gt~~ll~la~~~----------~~~k~~v~vST~~ 243 (554)
++.+. .++|++||+||.... .+ +...-...|+.++....+.+... ....+|-.|||..
T Consensus 80 v~~~v~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (169)
T PRK06720 80 WQRVISITLNAFSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKG 159 (169)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccc
Confidence 55543 369999999986432 22 22222355666665444444321 1245777888776
Q ss_pred ec
Q 042694 244 VN 245 (554)
Q Consensus 244 v~ 245 (554)
+.
T Consensus 160 ~~ 161 (169)
T PRK06720 160 QS 161 (169)
T ss_pred cc
Confidence 53
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.9e-06 Score=75.76 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=67.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+++|||||||+|. ++++|++.|.+| .+...+....+.+....+ ...++.++.+|+.++ ++...++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V-~v~~R~~~~~~~l~~~l~------~~~~i~~~~~Dv~d~------~sv~~~i 66 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHV-SVIARREVKLENVKREST------TPESITPLPLDYHDD------DALKLAI 66 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEE-EEEECCHHHHHHHHHHhh------cCCcEEEEEccCCCH------HHHHHHH
Confidence 47999999999886 999999988755 222212121222222111 134788899999987 6666555
Q ss_pred c-------CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCc----eEEEEeec
Q 042694 191 K-------EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLK----LFVQVSTA 242 (554)
Q Consensus 191 ~-------~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k----~~v~vST~ 242 (554)
+ .+|++|+. +.+.++.++.++|++. +++ +|+|+=..
T Consensus 67 ~~~l~~~g~id~lv~~---------------vh~~~~~~~~~~~~~~-gv~~~~~~~~h~~gs 113 (177)
T PRK08309 67 KSTIEKNGPFDLAVAW---------------IHSSAKDALSVVCREL-DGSSETYRLFHVLGS 113 (177)
T ss_pred HHHHHHcCCCeEEEEe---------------ccccchhhHHHHHHHH-ccCCCCceEEEEeCC
Confidence 3 45666654 3446788999999995 787 88887543
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=81.47 Aligned_cols=121 Identities=16% Similarity=0.065 Sum_probs=82.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
.++|.||||+|.+|+.+...|..++ -...+.++|... ......+ ..+ ..... ...+++.. +++...
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~-~~~el~L~Di~~---~~g~a~D-l~~-~~~~~--~i~~~~~~------~d~~~~ 83 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNP-LVSELHLYDIAN---TPGVAAD-VSH-INTPA--QVRGFLGD------DQLGDA 83 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEecCC---CCeeEch-hhh-CCcCc--eEEEEeCC------CCHHHH
Confidence 4689999999999999999887643 445778777432 0000000 000 01111 11122222 445566
Q ss_pred hcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceec
Q 042694 190 AKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVN 245 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~ 245 (554)
++++|+|||+||..+- .....++...|+..++++.+.+++. +.++++.++|.=+.
T Consensus 84 l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD 139 (323)
T PLN00106 84 LKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVN 139 (323)
T ss_pred cCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCcc
Confidence 7899999999998654 4577899999999999999999985 78999999996553
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-05 Score=97.81 Aligned_cols=129 Identities=13% Similarity=0.109 Sum_probs=89.8
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---------------------HHHHHHHcCC--------
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---------------------FKCLKQTYGK-------- 157 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---------------------~~~l~~~~~~-------- 157 (554)
+.++++++||||+|-||..++++|.+++. . +++++.+.. .+.++.....
T Consensus 1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~g-a-~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~ 2071 (2582)
T TIGR02813 1994 LNSDDVFLVTGGAKGVTFECALELAKQCQ-A-HFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDA 2071 (2582)
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHhcC-C-EEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhh
Confidence 45689999999999999999999998742 2 666654320 0001100000
Q ss_pred -------------ch--hhhccCcEEEEEccCCCCCCCCCHHHHHHHhc------CccEEEEcCCCCCc-------hhhH
Q 042694 158 -------------SY--QAFMLSKLVPAVGNVCENNLGLEEDLADVIAK------EVDVIVNSAANTTF-------DERY 209 (554)
Q Consensus 158 -------------~~--~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~------~vdiViH~AA~v~~-------~~~~ 209 (554)
.. ......++.++.+|+++. +..+.+.+ .+|+|||+||.... .+.+
T Consensus 2072 ~~~~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~------~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f 2145 (2582)
T TIGR02813 2072 LVRPVLSSLEIAQALAAFKAAGASAEYASADVTNS------VSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEF 2145 (2582)
T ss_pred cccccchhHHHHHHHHHHHhcCCcEEEEEccCCCH------HHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHH
Confidence 00 001234788999999997 55554443 58999999997432 3578
Q ss_pred HHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 210 DIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 210 ~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
+..+++|+.|+.++++.+.. ...+.+|++||...
T Consensus 2146 ~~v~~~nv~G~~~Ll~al~~-~~~~~IV~~SSvag 2179 (2582)
T TIGR02813 2146 NAVYGTKVDGLLSLLAALNA-ENIKLLALFSSAAG 2179 (2582)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCeEEEEechhh
Confidence 89999999999999999876 35678999999754
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1e-05 Score=81.62 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=86.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++|.||||+|.+|+.+...|..++ ....+.++|.. .......+ ..+ ..... ...+.+++ .++.
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~-~~~elvL~Di~---~~~g~a~D-l~~-~~~~~--~v~~~td~------~~~~ 71 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNP-HVSELSLYDIV---GAPGVAAD-LSH-IDTPA--KVTGYADG------ELWE 71 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCC-CCCEEEEEecC---CCcccccc-hhh-cCcCc--eEEEecCC------CchH
Confidence 578899999999999999999887543 34477777751 11110000 000 01111 22344443 4434
Q ss_pred HHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccc
Q 042694 188 VIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~ 247 (554)
..++++|+|+|+|+...- .++..++...|+..++++++..++. ++++++.++|.-+...
T Consensus 72 ~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~ 131 (321)
T PTZ00325 72 KALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNST 131 (321)
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHH
Confidence 455899999999998543 4567888999999999999999995 8999999999877554
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.8e-05 Score=75.88 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=75.2
Q ss_pred ccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcc-hhHHHHHHHcCCc-h-------hhh--ccCcEEEEEccC
Q 042694 108 LKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINA-ELFKCLKQTYGKS-Y-------QAF--MLSKLVPAVGNV 174 (554)
Q Consensus 108 ~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~-~~~~~l~~~~~~~-~-------~~~--~~~kv~~v~GDl 174 (554)
++||+++||||+ .-||+.+++.|.++|.+ |++.+. +.++.+++..... . ... ...++..+..|+
T Consensus 6 ~~gk~alITGa~~~~GIG~a~A~~la~~Ga~---Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~ 82 (299)
T PRK06300 6 LTGKIAFIAGIGDDQGYGWGIAKALAEAGAT---ILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASF 82 (299)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCCE---EEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhc
Confidence 468999999994 67999999999998864 444321 1111111110000 0 000 000111223333
Q ss_pred CCCC------------CCCCHHHHHHHh-------cCccEEEEcCCCC-----Cc----hhhHHHHHHHhchHHHHHHHH
Q 042694 175 CENN------------LGLEEDLADVIA-------KEVDVIVNSAANT-----TF----DERYDIAIDINTRGPCRLMEF 226 (554)
Q Consensus 175 ~~~~------------lGLs~~~~~~l~-------~~vdiViH~AA~v-----~~----~~~~~~~~~~Nv~gt~~ll~l 226 (554)
++++ --+++++.+.+. ..+|++||+||.. .+ .+.++..+++|+.|+..+.+.
T Consensus 83 ~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a 162 (299)
T PRK06300 83 DTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSH 162 (299)
T ss_pred CCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 3331 011222233332 3699999999752 22 246788899999999999998
Q ss_pred HHH-cCCCceEEEEeecee
Q 042694 227 AKQ-CNKLKLFVQVSTAYV 244 (554)
Q Consensus 227 a~~-~~~~k~~v~vST~~v 244 (554)
+.. +..-.+++.+||...
T Consensus 163 ~~p~m~~~G~ii~iss~~~ 181 (299)
T PRK06300 163 FGPIMNPGGSTISLTYLAS 181 (299)
T ss_pred HHHHhhcCCeEEEEeehhh
Confidence 865 222246888887533
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00019 Score=64.57 Aligned_cols=108 Identities=11% Similarity=0.111 Sum_probs=75.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|.|.||||-+|+.++++.+++|++|..|+ +++ ...+ ..+.+.+++.|+.++ +......
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAiv--Rn~------~K~~------~~~~~~i~q~Difd~------~~~a~~l 60 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIV--RNA------SKLA------ARQGVTILQKDIFDL------TSLASDL 60 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEE--eCh------Hhcc------ccccceeecccccCh------hhhHhhh
Confidence 5799999999999999999999999873332 221 1111 125778899999998 7777778
Q ss_pred cCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 191 KEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 191 ~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
.+.|+||..-+.... ++. .........|++..+. .++.|++.|..+++
T Consensus 61 ~g~DaVIsA~~~~~~-~~~----~~~~k~~~~li~~l~~-agv~RllVVGGAGS 108 (211)
T COG2910 61 AGHDAVISAFGAGAS-DND----ELHSKSIEALIEALKG-AGVPRLLVVGGAGS 108 (211)
T ss_pred cCCceEEEeccCCCC-Chh----HHHHHHHHHHHHHHhh-cCCeeEEEEcCccc
Confidence 899999986443211 111 1112236678888877 48899999987755
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3e-05 Score=68.76 Aligned_cols=203 Identities=17% Similarity=0.226 Sum_probs=124.1
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-h-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-E-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+.|++||+.--||+.++..|.+.|. +|+.+.+ + -...+.++ ...-|+++.+|++.. +
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA---~ViAvaR~~a~L~sLV~e--------~p~~I~Pi~~Dls~w------e 66 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGA---QVIAVARNEANLLSLVKE--------TPSLIIPIVGDLSAW------E 66 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCC---EEEEEecCHHHHHHHHhh--------CCcceeeeEecccHH------H
Confidence 46799999999988999999999998875 4454433 2 12233332 234589999999876 5
Q ss_pred HHHHHhc---CccEEEEcCCCCC---c----hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeeceecccccc
Q 042694 185 LADVIAK---EVDVIVNSAANTT---F----DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 185 ~~~~l~~---~vdiViH~AA~v~---~----~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v~~~~~~ 250 (554)
...++.. .+|-.+++||..- | .+.++..+++|+++...+.++..+. .....+|.+||....-.-.+
T Consensus 67 a~~~~l~~v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~n 146 (245)
T KOG1207|consen 67 ALFKLLVPVFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDN 146 (245)
T ss_pred HHHHhhcccCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCC
Confidence 4444443 5899999998532 3 2456677888999988888874431 12236899998755322110
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCch----HHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDG----EVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k----~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. .|..+| .++|.++.+.-.+ .+++..+-|..|.-
T Consensus 147 ---Ht-------------------------------------vYcatKaALDmlTk~lAlELGp~-kIRVNsVNPTVVmT 185 (245)
T KOG1207|consen 147 ---HT-------------------------------------VYCATKAALDMLTKCLALELGPQ-KIRVNSVNPTVVMT 185 (245)
T ss_pred ---ce-------------------------------------EEeecHHHHHHHHHHHHHhhCcc-eeEeeccCCeEEEe
Confidence 00 122222 3556665544332 68888899999875
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHH
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQ 383 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~ 383 (554)
... -..|.|... .++++ ..+| .--|.-||.|+++++-+..+
T Consensus 186 ~MG--~dnWSDP~K-~k~mL--------~riP-----l~rFaEV~eVVnA~lfLLSd 226 (245)
T KOG1207|consen 186 DMG--RDNWSDPDK-KKKML--------DRIP-----LKRFAEVDEVVNAVLFLLSD 226 (245)
T ss_pred ccc--ccccCCchh-ccchh--------hhCc-----hhhhhHHHHHHhhheeeeec
Confidence 432 246765421 11111 1111 11356688999987766544
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.4e-05 Score=71.99 Aligned_cols=211 Identities=18% Similarity=0.234 Sum_probs=124.8
Q ss_pred ccc--ccccHHHHHHHHhhCCCccEEEEEcchh------HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 117 GAT--GFLAKVLIEKILRTVPDVGKIFIINAEL------FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 117 GaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~~~------~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|++ +-||..++++|++.|. +|++.+... .+.+.++.+ .+ ++.+|++++ ++.+.
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga---~V~~~~~~~~~~~~~~~~l~~~~~--------~~--~~~~D~~~~------~~v~~ 61 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGA---NVILTDRNEEKLADALEELAKEYG--------AE--VIQCDLSDE------ESVEA 61 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTE---EEEEEESSHHHHHHHHHHHHHHTT--------SE--EEESCTTSH------HHHHH
T ss_pred CCCCCCChHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHHHHHHcC--------Cc--eEeecCcch------HHHHH
Confidence 566 8899999999999886 455554321 223333222 23 499999987 77766
Q ss_pred H-------h-cCccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecccc
Q 042694 189 I-------A-KEVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 189 l-------~-~~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~ 248 (554)
+ . ..+|++||+++.... .+.+...+++|+.+...+++.+... ..-.++|++||.......
T Consensus 62 ~~~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~ 141 (241)
T PF13561_consen 62 LFDEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPM 141 (241)
T ss_dssp HHHHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBS
T ss_pred HHHHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccC
Confidence 6 3 468999999987553 2467889999999999999988542 233589999987442221
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
+....+...+..+ ..+++.++.+...+.|+++..+.||.|-.+.
T Consensus 142 ----------------------------~~~~~y~~sKaal--------~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~ 185 (241)
T PF13561_consen 142 ----------------------------PGYSAYSASKAAL--------EGLTRSLAKELAPKKGIRVNAVSPGPIETPM 185 (241)
T ss_dssp ----------------------------TTTHHHHHHHHHH--------HHHHHHHHHHHGGHGTEEEEEEEESSBSSHH
T ss_pred ----------------------------ccchhhHHHHHHH--------HHHHHHHHHHhccccCeeeeeecccceeccc
Confidence 1111222222222 1345556555554248999999999986432
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....++. ....... .... |- --+...+|||+++..++..... --.+++..+.++
T Consensus 186 ~~~~~~~-------~~~~~~~-~~~~------pl--~r~~~~~evA~~v~fL~s~~a~--~itG~~i~vDGG 239 (241)
T PF13561_consen 186 TERIPGN-------EEFLEEL-KKRI------PL--GRLGTPEEVANAVLFLASDAAS--YITGQVIPVDGG 239 (241)
T ss_dssp HHHHHTH-------HHHHHHH-HHHS------TT--SSHBEHHHHHHHHHHHHSGGGT--TGTSEEEEESTT
T ss_pred hhccccc-------cchhhhh-hhhh------cc--CCCcCHHHHHHHHHHHhCcccc--CccCCeEEECCC
Confidence 1111110 0000000 0000 11 1245778999999888765421 123567776654
|
... |
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00051 Score=67.20 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=83.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
++|+||||+--+|..+...+.+++.+| ++..-..+....+.+.... ......+....+|+.+- +....++
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~V-ti~ar~~~kl~~a~~~l~l---~~~~~~v~~~S~d~~~Y------~~v~~~~ 103 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADV-TITARSGKKLLEAKAELEL---LTQVEDVSYKSVDVIDY------DSVSKVI 103 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCce-EEEeccHHHHHHHHhhhhh---hhccceeeEeccccccH------HHHHHHH
Confidence 589999999999999999999999877 4444443333333332221 11223467889999554 3333333
Q ss_pred -------cCccEEEEcCCCCC---c----hhhHHHHHHHhchHHHHHHHHHHH-cCCCc---eEEEEeecee
Q 042694 191 -------KEVDVIVNSAANTT---F----DERYDIAIDINTRGPCRLMEFAKQ-CNKLK---LFVQVSTAYV 244 (554)
Q Consensus 191 -------~~vdiViH~AA~v~---~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k---~~v~vST~~v 244 (554)
-.+|.+||||+..- | .+..+...++|..||.++++.+.. ++... +++.+||...
T Consensus 104 ~~l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a 175 (331)
T KOG1210|consen 104 EELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLA 175 (331)
T ss_pred hhhhhccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhh
Confidence 26899999998632 2 245778999999999999988753 33333 7888887644
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.6e-05 Score=77.53 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=57.0
Q ss_pred EEEEccCCCCCCCCCHHHHHHHhc----CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeec
Q 042694 168 VPAVGNVCENNLGLEEDLADVIAK----EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTA 242 (554)
Q Consensus 168 ~~v~GDl~~~~lGLs~~~~~~l~~----~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~ 242 (554)
..+.+|+++. ++.+.+.+ ++|+|||+||... ..+++..+++|+.|+..+++++... .+-.++|++||.
T Consensus 26 ~~~~~Dl~~~------~~v~~~~~~~~~~iD~li~nAG~~~-~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~ 98 (241)
T PRK12428 26 GFIQADLGDP------ASIDAAVAALPGRIDALFNIAGVPG-TAPVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASL 98 (241)
T ss_pred HhhcccCCCH------HHHHHHHHHhcCCCeEEEECCCCCC-CCCHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcH
Confidence 3578899887 66666655 5899999999754 3568899999999999999998752 223689999999
Q ss_pred eecc
Q 042694 243 YVNG 246 (554)
Q Consensus 243 ~v~~ 246 (554)
..++
T Consensus 99 ~~~~ 102 (241)
T PRK12428 99 AGAE 102 (241)
T ss_pred Hhhc
Confidence 8765
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00019 Score=66.82 Aligned_cols=124 Identities=16% Similarity=0.183 Sum_probs=80.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
.++||||||.--||--|+++|++ .+++..++.-.+..-...++ ... .....+++++++-|++.. +.++.+
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk-~~~i~~iiat~r~~e~a~~~-l~~--k~~~d~rvHii~Ldvt~d------eS~~~~ 72 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLK-DKGIEVIIATARDPEKAATE-LAL--KSKSDSRVHIIQLDVTCD------ESIDNF 72 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhc-CCCcEEEEEecCChHHhhHH-HHH--hhccCCceEEEEEecccH------HHHHHH
Confidence 46799999999999999999997 46675555443311111111 111 011367999999999876 544444
Q ss_pred h---------cCccEEEEcCCCCC-c-------hhhHHHHHHHhchHHHHHHHHH----HHcCCC-----------ceEE
Q 042694 190 A---------KEVDVIVNSAANTT-F-------DERYDIAIDINTRGPCRLMEFA----KQCNKL-----------KLFV 237 (554)
Q Consensus 190 ~---------~~vdiViH~AA~v~-~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~-----------k~~v 237 (554)
. ++.|+.+++||... + ...+-..+++|+.|+..+.+.. ++ ... ..+|
T Consensus 73 ~~~V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkk-aas~~~gd~~s~~raaIi 151 (249)
T KOG1611|consen 73 VQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKK-AASKVSGDGLSVSRAAII 151 (249)
T ss_pred HHHHHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHH-HhhcccCCcccccceeEE
Confidence 3 37899999999743 2 2346688999999876655443 22 122 2788
Q ss_pred EEeecee
Q 042694 238 QVSTAYV 244 (554)
Q Consensus 238 ~vST~~v 244 (554)
++||...
T Consensus 152 nisS~~~ 158 (249)
T KOG1611|consen 152 NISSSAG 158 (249)
T ss_pred Eeecccc
Confidence 8887644
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.3e-05 Score=78.36 Aligned_cols=121 Identities=18% Similarity=0.097 Sum_probs=72.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCC----CccEEEEEcchhH-HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVP----DVGKIFIINAELF-KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~----~V~~i~~~~~~~~-~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+.+|+||||+|++|++++..|+..+- .-..|++++.... +.+.. .... ..+-..+..+|+... .
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g-~~~D----l~d~~~~~~~~~~~~------~ 70 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG-VVME----LQDCAFPLLKSVVAT------T 70 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc-eeee----hhhccccccCCceec------C
Confidence 34799999999999999999987431 0116777764211 00100 0000 000000112232222 4
Q ss_pred HHHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 185 LADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++...++++|+|||+|+..+- .++..++.+.|+.-.+++.+...++.....++.+-|
T Consensus 71 ~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 71 DPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred CHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 444555799999999998654 456678999999999999888777532344444433
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=67.91 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=101.5
Q ss_pred HHHHHhchHHHHHHHHHHHcCCC-ceEEEEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhh
Q 042694 211 IAIDINTRGPCRLMEFAKQCNKL-KLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLAL 289 (554)
Q Consensus 211 ~~~~~Nv~gt~~ll~la~~~~~~-k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 289 (554)
+....-+..|..|.++....+.. +++|.+|..++|-... .+.|++... ....|+...+-.
T Consensus 99 ev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~----s~eY~e~~~-------------~qgfd~~srL~l-- 159 (315)
T KOG3019|consen 99 EVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSE----SQEYSEKIV-------------HQGFDILSRLCL-- 159 (315)
T ss_pred HhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccc----ccccccccc-------------cCChHHHHHHHH--
Confidence 44444556688888888776654 5999999998887642 223433221 012222111100
Q ss_pred hccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccch
Q 042694 290 ESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVP 369 (554)
Q Consensus 290 ~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vp 369 (554)
+|. ..+.. ......++++|.|.|.|.....+...+ -+ +.+...|-+ ++++..+.|||
T Consensus 160 --------~WE--~aA~~--~~~~~r~~~iR~GvVlG~gGGa~~~M~------lp-F~~g~GGPl----GsG~Q~fpWIH 216 (315)
T KOG3019|consen 160 --------EWE--GAALK--ANKDVRVALIRIGVVLGKGGGALAMMI------LP-FQMGAGGPL----GSGQQWFPWIH 216 (315)
T ss_pred --------HHH--HHhhc--cCcceeEEEEEEeEEEecCCcchhhhh------hh-hhhccCCcC----CCCCeeeeeee
Confidence 111 11111 123589999999999996553221111 11 111112333 67788899999
Q ss_pred hhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 370 ADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 370 VD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
+||+++.|..+++.+.. ..+.|-+.+ ++.+..|+.+.+.+.++++
T Consensus 217 v~DL~~li~~ale~~~v-----~GViNgvAP--~~~~n~Ef~q~lg~aL~Rp 261 (315)
T KOG3019|consen 217 VDDLVNLIYEALENPSV-----KGVINGVAP--NPVRNGEFCQQLGSALSRP 261 (315)
T ss_pred hHHHHHHHHHHHhcCCC-----CceecccCC--CccchHHHHHHHHHHhCCC
Confidence 99999999998887554 358898888 8999999999999998864
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.7e-06 Score=77.83 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=51.8
Q ss_pred cCcEEEEeccc----------------ccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEc
Q 042694 109 KAKNFFVTGAT----------------GFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVG 172 (554)
Q Consensus 109 ~~~~VlITGaT----------------GFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~G 172 (554)
+|++||||+|- ||+|++|++.|+++|.+| ++++.... ..+...+ ...++..+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V---~li~g~~~-----~~~~~~~--~~~~~~~V~s 71 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHV---IYLHGYFA-----EKPNDIN--NQLELHPFEG 71 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeE---EEEeCCCc-----CCCcccC--CceeEEEEec
Confidence 68999999774 999999999999998754 44443211 0000000 0123445666
Q ss_pred cCCCCCCCCCHHHHHHHhc--CccEEEEcCCCCCch
Q 042694 173 NVCENNLGLEEDLADVIAK--EVDVIVNSAANTTFD 206 (554)
Q Consensus 173 Dl~~~~lGLs~~~~~~l~~--~vdiViH~AA~v~~~ 206 (554)
|.... +.+..+.+ ++|+|||+||...|.
T Consensus 72 ~~d~~------~~l~~~~~~~~~D~VIH~AAvsD~~ 101 (229)
T PRK09620 72 IIDLQ------DKMKSIITHEKVDAVIMAAAGSDWV 101 (229)
T ss_pred HHHHH------HHHHHHhcccCCCEEEECcccccee
Confidence 43322 34455553 689999999997774
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00031 Score=71.13 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=51.6
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.+++++|+||||||++|+.++++|++. ..+++++++++. ..++..... .+ ..+|+ .++
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~-~gv~~lilv~R~-~~rl~~La~---------el--~~~~i---------~~l 209 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAK-TGVAELLLVARQ-QERLQELQA---------EL--GGGKI---------LSL 209 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhh-CCCCEEEEEcCC-HHHHHHHHH---------Hh--ccccH---------HhH
Confidence 468899999999999999999999864 235678877653 223322111 00 11333 234
Q ss_pred HHHhcCccEEEEcCCCCCc
Q 042694 187 DVIAKEVDVIVNSAANTTF 205 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~ 205 (554)
.....++|+|||+++..+.
T Consensus 210 ~~~l~~aDiVv~~ts~~~~ 228 (340)
T PRK14982 210 EEALPEADIVVWVASMPKG 228 (340)
T ss_pred HHHHccCCEEEECCcCCcC
Confidence 4566789999999998654
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0023 Score=62.71 Aligned_cols=168 Identities=15% Similarity=0.155 Sum_probs=105.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+=..|||||.-||+...++|.++|.+ |+++.+ +..+++.++-.+. ..-.+..+..|.++++ ++++.
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~n---vvLIsRt~~KL~~v~kEI~~~----~~vev~~i~~Dft~~~-----~~ye~ 117 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFN---VVLISRTQEKLEAVAKEIEEK----YKVEVRIIAIDFTKGD-----EVYEK 117 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHH----hCcEEEEEEEecCCCc-----hhHHH
Confidence 55799999999999999999998874 565543 3455555554321 2346788999999983 34555
Q ss_pred Hhc-----CccEEEEcCCCCC-----ch----hhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccccce
Q 042694 189 IAK-----EVDVIVNSAANTT-----FD----ERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQRRGK 251 (554)
Q Consensus 189 l~~-----~vdiViH~AA~v~-----~~----~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~~~~ 251 (554)
+.+ ++-+.|++++... |. +.++....+|+.++..+.+.-.. | .+--.++++||..-.-+
T Consensus 118 i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p---- 193 (312)
T KOG1014|consen 118 LLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIP---- 193 (312)
T ss_pred HHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccccc----
Confidence 543 6789999999754 21 13455666788887777666542 1 13347888887532111
Q ss_pred eeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 252 VMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 252 i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.|.. ..|..+|.| -.++++.+.+++.. .|+-+-.+=|..|.+.
T Consensus 194 ------------------------~p~~------s~ysasK~~--v~~~S~~L~~Ey~~-~gI~Vq~v~p~~VaTk 236 (312)
T KOG1014|consen 194 ------------------------TPLL------SVYSASKAF--VDFFSRCLQKEYES-KGIFVQSVIPYLVATK 236 (312)
T ss_pred ------------------------ChhH------HHHHHHHHH--HHHHHHHHHHHHHh-cCeEEEEeehhheecc
Confidence 1111 122222221 13667777776654 3788888888887653
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00085 Score=68.82 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=72.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|.|| |++|+.++.+|.+++. .+|++.++.. -+++... ...++++++.|..+. +...
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d--~~V~iAdRs~~~~~~i~~~--------~~~~v~~~~vD~~d~------~al~ 63 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD--GEVTIADRSKEKCARIAEL--------IGGKVEALQVDAADV------DALV 63 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHhh--------ccccceeEEecccCh------HHHH
Confidence 478999999 9999999999999763 4788776542 2333322 234899999999998 8888
Q ss_pred HHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeece
Q 042694 188 VIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAY 243 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~ 243 (554)
.++++.|+|||++.... +..++++|.+. + ..|+-|++
T Consensus 64 ~li~~~d~VIn~~p~~~---------------~~~i~ka~i~~-g---v~yvDts~ 100 (389)
T COG1748 64 ALIKDFDLVINAAPPFV---------------DLTILKACIKT-G---VDYVDTSY 100 (389)
T ss_pred HHHhcCCEEEEeCCchh---------------hHHHHHHHHHh-C---CCEEEccc
Confidence 88899999999987511 22688888874 3 34555543
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00054 Score=60.75 Aligned_cols=123 Identities=19% Similarity=0.181 Sum_probs=84.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.+|-.-+||||..-||+.-.|.|.++|.. +.+++- +.-+...++ ...++++.+.|++.+ ++
T Consensus 7 ~kglvalvtggasglg~ataerlakqgas---v~lldlp~skg~~vake--------lg~~~vf~padvtse------kd 69 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQGAS---VALLDLPQSKGADVAKE--------LGGKVVFTPADVTSE------KD 69 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcCce---EEEEeCCcccchHHHHH--------hCCceEEeccccCcH------HH
Confidence 46777899999999999999999998864 444442 211222222 346899999999876 55
Q ss_pred HHHHh-------cCccEEEEcCCCCC------c-------hhhHHHHHHHhchHHHHHHHHHHH-cC------CCceEEE
Q 042694 186 ADVIA-------KEVDVIVNSAANTT------F-------DERYDIAIDINTRGPCRLMEFAKQ-CN------KLKLFVQ 238 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~------~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~------~~k~~v~ 238 (554)
.+..+ .+.|+.++||++.- + .++++..+++|+.||.|++++... |+ +-++=|.
T Consensus 70 v~aala~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgvi 149 (260)
T KOG1199|consen 70 VRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVI 149 (260)
T ss_pred HHHHHHHHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEE
Confidence 44332 27999999998731 1 356778888999999999998753 21 2245566
Q ss_pred Eeeceeccc
Q 042694 239 VSTAYVNGQ 247 (554)
Q Consensus 239 vST~~v~~~ 247 (554)
+-|++|...
T Consensus 150 intasvaaf 158 (260)
T KOG1199|consen 150 INTASVAAF 158 (260)
T ss_pred Eeeceeeee
Confidence 666666443
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0057 Score=57.20 Aligned_cols=121 Identities=19% Similarity=0.138 Sum_probs=75.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC---CH--H
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL---EE--D 184 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL---s~--~ 184 (554)
++-|||||++--||..++..++..+.+. . +.-..... ...+.+.+..||.....-|. +. +
T Consensus 6 r~villTGaSrgiG~~~v~~i~aed~e~-~----------r~g~~r~~----a~~~~L~v~~gd~~v~~~g~~~e~~~l~ 70 (253)
T KOG1204|consen 6 RKVILLTGASRGIGTGSVATILAEDDEA-L----------RYGVARLL----AELEGLKVAYGDDFVHVVGDITEEQLLG 70 (253)
T ss_pred ceEEEEecCCCCccHHHHHHHHhcchHH-H----------HHhhhccc----ccccceEEEecCCcceechHHHHHHHHH
Confidence 4678999999999999998888765443 1 11111111 01345555555544332221 11 1
Q ss_pred HHHHHhc----CccEEEEcCCCCCc----------hhhHHHHHHHhchHHHHHHHHHHH-cCCC---ceEEEEeeceec
Q 042694 185 LADVIAK----EVDVIVNSAANTTF----------DERYDIAIDINTRGPCRLMEFAKQ-CNKL---KLFVQVSTAYVN 245 (554)
Q Consensus 185 ~~~~l~~----~vdiViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~---k~~v~vST~~v~ 245 (554)
+..++.+ +-|+|||+||.... ...++.+++.|+.+...|...+.. .++. +-+|+|||..+.
T Consensus 71 al~e~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav 149 (253)
T KOG1204|consen 71 ALREAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV 149 (253)
T ss_pred HHHhhhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh
Confidence 2222221 68999999998542 246789999999999999887764 2222 568999997553
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0006 Score=65.68 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=54.3
Q ss_pred EEe-cccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcC
Q 042694 114 FVT-GATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKE 192 (554)
Q Consensus 114 lIT-GaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~ 192 (554)
+|| .+|||+|++|++.|+++|.+| +++.+.. . ..+. ...++..+..+-.+.. .+......++
T Consensus 19 ~itN~SSG~iG~aLA~~L~~~G~~V---~li~r~~--~---~~~~-----~~~~v~~i~v~s~~~m----~~~l~~~~~~ 81 (229)
T PRK06732 19 GITNHSTGQLGKIIAETFLAAGHEV---TLVTTKT--A---VKPE-----PHPNLSIIEIENVDDL----LETLEPLVKD 81 (229)
T ss_pred eecCccchHHHHHHHHHHHhCCCEE---EEEECcc--c---ccCC-----CCCCeEEEEEecHHHH----HHHHHHHhcC
Confidence 444 689999999999999988754 4443221 0 0000 1134555553322110 1234445568
Q ss_pred ccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHH
Q 042694 193 VDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQ 229 (554)
Q Consensus 193 vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~ 229 (554)
+|+|||+||...+.. ....-..+...+.++.++++.
T Consensus 82 ~DivIh~AAvsd~~~-~~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 82 HDVLIHSMAVSDYTP-VYMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred CCEEEeCCccCCcee-hhhhhhhhhhhhhhhhhhhcc
Confidence 999999999876532 222223344455556666543
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0025 Score=58.81 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=81.7
Q ss_pred CcEEEEecc-cccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGA-TGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGa-TGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.+.|+|||+ .|-||..|.+++-+.|. .||...+ +..+.|.. ..++.+..-|++++ +..
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~---~V~AtaR~~e~M~~L~~----------~~gl~~~kLDV~~~------~~V 67 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGY---LVYATARRLEPMAQLAI----------QFGLKPYKLDVSKP------EEV 67 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCe---EEEEEccccchHhhHHH----------hhCCeeEEeccCCh------HHH
Confidence 468999875 68999999999999887 4554332 22333322 24678899999998 554
Q ss_pred HHHhc--------CccEEEEcCCCCC-c------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceeccc
Q 042694 187 DVIAK--------EVDVIVNSAANTT-F------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 187 ~~l~~--------~vdiViH~AA~v~-~------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~~ 247 (554)
.++.. ..|+.+++|+.-. + .+.-+...++||.|..++.++...+ +.-..+|++.|..++.+
T Consensus 68 ~~v~~evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vp 145 (289)
T KOG1209|consen 68 VTVSGEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVP 145 (289)
T ss_pred HHHHHHHhhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEec
Confidence 44432 5799999998632 2 3467789999999977776665432 22337899988766543
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.003 Score=63.88 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=76.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|+|.||||.+|++++..|.........+++++.... .....-+.. .......+.| .. .+++...+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~---~~g~alDl~--~~~~~~~i~~--~~------~~d~~~~l 67 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV---TPGVAVDLS--HIPTAVKIKG--FS------GEDPTPAL 67 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC---Ccceehhhh--cCCCCceEEE--eC------CCCHHHHc
Confidence 58999999999999999988653333445666664211 000000000 0011112223 10 13433344
Q ss_pred cCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 191 KEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 191 ~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
+++|+||-+++..+- .++...+...|+..++++++..++. +.++++.+.|-=+
T Consensus 68 ~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~ 121 (312)
T PRK05086 68 EGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPV 121 (312)
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 789999999998543 3456788999999999999999985 7889998888433
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0029 Score=66.24 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=64.5
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcC
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKE 192 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~ 192 (554)
|+|.|| |++|+.+++.|+++.+ +.+|++.++. .+++++.... ....++..+..|+.++ +.+..++++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~-~~~v~va~r~-~~~~~~~~~~----~~~~~~~~~~~d~~~~------~~l~~~~~~ 67 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGP-FEEVTVADRN-PEKAERLAEK----LLGDRVEAVQVDVNDP------ESLAELLRG 67 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTC-E-EEEEEESS-HHHHHHHHT------TTTTEEEEE--TTTH------HHHHHHHTT
T ss_pred CEEEcC-cHHHHHHHHHHhcCCC-CCcEEEEECC-HHHHHHHHhh----ccccceeEEEEecCCH------HHHHHHHhc
Confidence 789999 9999999999998653 4467766643 2233222211 0246899999999988 779999999
Q ss_pred ccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeece
Q 042694 193 VDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAY 243 (554)
Q Consensus 193 vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~ 243 (554)
.|+||||++.. + ...++++|.+. + .+|+.+.+
T Consensus 68 ~dvVin~~gp~-~--------------~~~v~~~~i~~-g---~~yvD~~~ 99 (386)
T PF03435_consen 68 CDVVINCAGPF-F--------------GEPVARACIEA-G---VHYVDTSY 99 (386)
T ss_dssp SSEEEE-SSGG-G--------------HHHHHHHHHHH-T----EEEESS-
T ss_pred CCEEEECCccc-h--------------hHHHHHHHHHh-C---CCeeccch
Confidence 99999999863 1 23578888875 3 46666544
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0013 Score=65.19 Aligned_cols=87 Identities=21% Similarity=0.329 Sum_probs=58.2
Q ss_pred EEEEecccccccHHHHHHHHhhC--CCccEEEEE--cch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTV--PDVGKIFII--NAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~--~~V~~i~~~--~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
-+.|-|||||-|+++++++++.. ++. .+-+- +.. ..+.|+... ........+.+ ++.+|.+++ +.+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~-slavAGRn~~KL~~vL~~~~-~k~~~~ls~~~-i~i~D~~n~------~Sl 77 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGL-SLAVAGRNEKKLQEVLEKVG-EKTGTDLSSSV-ILIADSANE------ASL 77 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCc-eEEEecCCHHHHHHHHHHHh-hccCCCcccce-EEEecCCCH------HHH
Confidence 47999999999999999999832 222 22222 112 222222222 21111233444 888999998 999
Q ss_pred HHHhcCccEEEEcCCCCCchh
Q 042694 187 DVIAKEVDVIVNSAANTTFDE 207 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~~~ 207 (554)
.++++.+.+|+||++.-+|..
T Consensus 78 ~emak~~~vivN~vGPyR~hG 98 (423)
T KOG2733|consen 78 DEMAKQARVIVNCVGPYRFHG 98 (423)
T ss_pred HHHHhhhEEEEeccccceecC
Confidence 999999999999999987743
|
|
| >PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups [] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0004 Score=52.81 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=27.3
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+||++|+|||.+++|...+++++|+.+
T Consensus 21 ~~~~~~lG~DSl~~~~l~~~l~~~~g~~i 49 (67)
T PF00550_consen 21 DTDFFDLGLDSLDAIELVSELEEEFGIKI 49 (67)
T ss_dssp TSBTTTTTSSHHHHHHHHHHHHHHHTSST
T ss_pred CCCHHHhCCchHHHHHHHHHHHHHHcCCC
Confidence 34999999999999999999999999988
|
The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A .... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0052 Score=62.33 Aligned_cols=113 Identities=19% Similarity=0.098 Sum_probs=73.1
Q ss_pred EEEEecccccccHHHHHHHHhhCCCcc-----EEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC-----
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVG-----KIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL----- 181 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~-----~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL----- 181 (554)
+|.||||+|.+|+.++..|+..+ -+. .++++|.... .++......|+.+....+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~-~~~~~~~~~l~L~Di~~~---------------~~~~~g~~~Dl~d~~~~~~~~~~ 65 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGE-LFGDDQPVILHLLDIPPA---------------MKALEGVVMELQDCAFPLLKGVV 65 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCC-ccCCCCceEEEEEecCCc---------------cCccceeeeehhhhcccccCCcE
Confidence 68999999999999999888643 232 3666664210 012233444555442111
Q ss_pred -CHHHHHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 182 -EEDLADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 182 -s~~~~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
...++ ..++++|+|+|+|+..+- .++-.++...|+.-.+++....+++.+...++.+-|
T Consensus 66 i~~~~~-~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 66 ITTDPE-EAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred EecChH-HHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 12333 445799999999997543 456778899999999999988887533444444433
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0019 Score=60.70 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=52.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++++|+|+||||.+|+.+++.|.+.+. +|+++.+. .+++.+.... ... ........+|..+. ++..
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~---~V~l~~R~-~~~~~~l~~~-l~~--~~~~~~~~~~~~~~------~~~~ 92 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA---RVVLVGRD-LERAQKAADS-LRA--RFGEGVGAVETSDD------AARA 92 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCC-HHHHHHHHHH-HHh--hcCCcEEEeeCCCH------HHHH
Confidence 4678999999999999999999998664 55555433 2333221110 000 01223345566554 6777
Q ss_pred HHhcCccEEEEcCCC
Q 042694 188 VIAKEVDVIVNSAAN 202 (554)
Q Consensus 188 ~l~~~vdiViH~AA~ 202 (554)
...+++|+||++.+.
T Consensus 93 ~~~~~~diVi~at~~ 107 (194)
T cd01078 93 AAIKGADVVFAAGAA 107 (194)
T ss_pred HHHhcCCEEEECCCC
Confidence 777899999998765
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0067 Score=61.53 Aligned_cols=178 Identities=15% Similarity=0.093 Sum_probs=99.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCcc-----EEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCC---C-
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVG-----KIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENN---L- 179 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~-----~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~---l- 179 (554)
.++|.|+||+|.+|..++..|+..+- .. .++++|.. ..++ .....-|+.+-. +
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~-~~~~~~~el~L~Di~~~~~~----------------a~g~a~Dl~~~~~~~~~ 64 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEM-FGPDQPVILQLLELPQALKA----------------LEGVAMELEDCAFPLLA 64 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccc-cCCCCceEEEEEecCCcccc----------------cceeehhhhhccccccC
Confidence 56899999999999999999986432 33 67777742 1111 111111221110 0
Q ss_pred --CCCHHHHHHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccc
Q 042694 180 --GLEEDLADVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKP 256 (554)
Q Consensus 180 --GLs~~~~~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~ 256 (554)
-....+++. ++++|+||-+|+..+ ..++-.++...|+.-.+++.....+......++.+-|--|.-...-......
T Consensus 65 ~~~i~~~~~~~-~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg 143 (322)
T cd01338 65 EIVITDDPNVA-FKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAP 143 (322)
T ss_pred ceEEecCcHHH-hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcC
Confidence 001123333 379999999999744 3456678899999999999998887532244444444212111000000000
Q ss_pred -cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC-Cccc
Q 042694 257 -FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE-PFSG 334 (554)
Q Consensus 257 -~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~-p~~g 334 (554)
+ |+ .+.++.++.-+.++.....++.|++...+|..+|+|...+ -+|.
T Consensus 144 ~~-------------------p~------------~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~ 192 (322)
T cd01338 144 DI-------------------PP------------DNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPD 192 (322)
T ss_pred CC-------------------Ch------------HheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEe
Confidence 0 00 0012223445556655555667899999999898886543 2444
Q ss_pred cc
Q 042694 335 WM 336 (554)
Q Consensus 335 ~~ 336 (554)
|.
T Consensus 193 ~S 194 (322)
T cd01338 193 FT 194 (322)
T ss_pred hh
Confidence 43
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.01 Score=60.27 Aligned_cols=113 Identities=19% Similarity=0.113 Sum_probs=73.2
Q ss_pred EEEEecccccccHHHHHHHHhhCCCcc-----EEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC-----
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVG-----KIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL----- 181 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~-----~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL----- 181 (554)
+|.|+||+|.+|+.++..|...+- +. .++++|... ..++......|+.+...-+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~-~~~~~e~el~LiD~~~---------------~~~~a~g~~~Dl~d~~~~~~~~~~ 64 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRM-LGKDQPIILHLLDIPP---------------AMKVLEGVVMELMDCAFPLLDGVV 64 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccc-cCCCCccEEEEEecCC---------------cccccceeEeehhcccchhcCcee
Confidence 589999999999999999886332 21 466666421 0112333455555543111
Q ss_pred -CHHHHHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 182 -EEDLADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 182 -s~~~~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
+.++++ .++++|+|||+|+..+- .++..++...|+.-.+++.+...++.+.+.++.+-|
T Consensus 65 ~~~~~~~-~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 65 PTHDPAV-AFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred ccCChHH-HhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 112233 45799999999998554 345778899999999999999887523444544444
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.025 Score=50.08 Aligned_cols=115 Identities=15% Similarity=0.051 Sum_probs=74.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCC--chhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGK--SYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~--~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|.|+||+|.+|++++..|+.. .-+.+++++|...- ++....-+ ........++....+|..+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-~l~~ei~L~D~~~~-~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~------------ 66 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-GLADEIVLIDINED-KAEGEALDLSHASAPLPSPVRITSGDYEA------------ 66 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-TTSSEEEEEESSHH-HHHHHHHHHHHHHHGSTEEEEEEESSGGG------------
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCCCceEEeccCcc-cceeeehhhhhhhhhcccccccccccccc------------
Confidence 47999999999999999999886 45678998886421 11111100 0011112234444433322
Q ss_pred HhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 189 IAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 189 l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++++|+|+-+|+..+ ..+.-.++.+.|+.-.+++.+...+. ..+.++.+-|
T Consensus 67 -~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvt 118 (141)
T PF00056_consen 67 -LKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVT 118 (141)
T ss_dssp -GTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-S
T ss_pred -cccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeC
Confidence 368999999998743 34567788999999999999999885 4544444443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0076 Score=61.74 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=53.3
Q ss_pred cCcEEEEecccccccHH--HHHHHHhhCCCccEEEEEc--chhHH------------HHHHHcCCchhhhccCcEEEEEc
Q 042694 109 KAKNFFVTGATGFLAKV--LIEKILRTVPDVGKIFIIN--AELFK------------CLKQTYGKSYQAFMLSKLVPAVG 172 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~--Ll~~LL~~~~~V~~i~~~~--~~~~~------------~l~~~~~~~~~~~~~~kv~~v~G 172 (554)
.+|++|||||++-+|.. +.+.| +.|.++ +++. .+..+ .+.+... ....++..+.+
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~V---i~v~~~~~~~~~~~~tagwy~~~a~~~~a~-----~~G~~a~~i~~ 110 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGADT---LGVFFEKPGTEKKTGTAGWYNSAAFDKFAK-----AAGLYAKSING 110 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCCeE---EEEecCcchhhhcccccccchHHHHHHHHH-----hcCCceEEEEc
Confidence 46899999999999999 88888 777543 3332 21111 1111111 01234667899
Q ss_pred cCCCCCCCCCHHHHHHHhc-------CccEEEEcCCCCCc
Q 042694 173 NVCENNLGLEEDLADVIAK-------EVDVIVNSAANTTF 205 (554)
Q Consensus 173 Dl~~~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~ 205 (554)
|++++ +..+.+++ ++|+++|++|..+-
T Consensus 111 DVss~------E~v~~lie~I~e~~G~IDiLVnSaA~~~r 144 (398)
T PRK13656 111 DAFSD------EIKQKVIELIKQDLGQVDLVVYSLASPRR 144 (398)
T ss_pred CCCCH------HHHHHHHHHHHHhcCCCCEEEECCccCCC
Confidence 99987 66555543 69999999997543
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0039 Score=65.00 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=50.7
Q ss_pred ccCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEE
Q 042694 108 LKAKNFFVTGA----------------TGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAV 171 (554)
Q Consensus 108 ~~~~~VlITGa----------------TGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~ 171 (554)
++|++|+|||| ||.+|..+++.|.+.|.+ |+++..+. .+. . ...+ ..
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~---V~~v~~~~--~~~--~--------~~~~--~~ 248 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGAD---VTLVSGPV--NLP--T--------PAGV--KR 248 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCE---EEEeCCCc--ccc--C--------CCCc--EE
Confidence 57999999999 999999999999998864 44444321 010 0 1122 34
Q ss_pred ccCCCCCCCCCHHHHHHHh----cCccEEEEcCCCCCc
Q 042694 172 GNVCENNLGLEEDLADVIA----KEVDVIVNSAANTTF 205 (554)
Q Consensus 172 GDl~~~~lGLs~~~~~~l~----~~vdiViH~AA~v~~ 205 (554)
.|+++. +++.... .++|++||+||...|
T Consensus 249 ~dv~~~------~~~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 249 IDVESA------QEMLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred EccCCH------HHHHHHHHHhcCCCCEEEEccccccc
Confidence 577665 3333332 479999999998665
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.014 Score=57.03 Aligned_cols=93 Identities=9% Similarity=0.150 Sum_probs=55.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||+||||. |+.|++.|.+.+++| ++.+....-...-. ......+.++..+. +++..++
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v--~~s~~t~~~~~~~~----------~~g~~~v~~g~l~~------~~l~~~l 61 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEI--LVTVTTSEGKHLYP----------IHQALTVHTGALDP------QELREFL 61 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeE--EEEEccCCcccccc----------ccCCceEEECCCCH------HHHHHHH
Confidence 57999999999 999999999877644 34443321110000 01112233333333 4454454
Q ss_pred c--CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCce
Q 042694 191 K--EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKL 235 (554)
Q Consensus 191 ~--~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~ 235 (554)
+ ++|+|||++.. |.. .-++++.++|+++ ++.-
T Consensus 62 ~~~~i~~VIDAtHP------fA~------~is~~a~~a~~~~-~ipy 95 (256)
T TIGR00715 62 KRHSIDILVDATHP------FAA------QITTNATAVCKEL-GIPY 95 (256)
T ss_pred HhcCCCEEEEcCCH------HHH------HHHHHHHHHHHHh-CCcE
Confidence 3 69999998643 222 3467888999985 5543
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0018 Score=87.02 Aligned_cols=54 Identities=6% Similarity=0.046 Sum_probs=43.2
Q ss_pred CCcchhHHHHhhcccceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee-----cccccee
Q 042694 10 SVAPNKFVKAFENNCDLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLV 69 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~ 69 (554)
+..+.+..+ +|++++..+.+ |||++|||||+||||.+++++.+|+.+ +++||+.
T Consensus 4240 ~~~e~~l~~------iw~~vL~~~~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~ 4302 (4334)
T PRK05691 4240 NELEQTLAT------IWADVLKVERVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVE 4302 (4334)
T ss_pred CHHHHHHHH------HHHHHhCCCcCCCCCchhhcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHH
Confidence 334555666 89977775544 999999999999999999999999887 3777764
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.023 Score=56.21 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=51.7
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK 191 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~ 191 (554)
.++|-|||||.|+.++|+|.+.+... -+--.+....++++...+..... . ++.. ++..+.+++
T Consensus 8 d~iiYGAtGy~G~lvae~l~~~g~~~-aLAgRs~~kl~~l~~~LG~~~~~--------~--p~~~------p~~~~~~~~ 70 (382)
T COG3268 8 DIIIYGATGYAGGLVAEYLAREGLTA-ALAGRSSAKLDALRASLGPEAAV--------F--PLGV------PAALEAMAS 70 (382)
T ss_pred eEEEEccccchhHHHHHHHHHcCCch-hhccCCHHHHHHHHHhcCccccc--------c--CCCC------HHHHHHHHh
Confidence 58999999999999999999977543 11112334566666665432111 1 1222 488999999
Q ss_pred CccEEEEcCCCC
Q 042694 192 EVDVIVNSAANT 203 (554)
Q Consensus 192 ~vdiViH~AA~v 203 (554)
.+++|+||++.-
T Consensus 71 ~~~VVlncvGPy 82 (382)
T COG3268 71 RTQVVLNCVGPY 82 (382)
T ss_pred cceEEEeccccc
Confidence 999999999963
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.099 Score=53.46 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=72.4
Q ss_pred chhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH---------------------------HHHHHHc
Q 042694 103 GIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF---------------------------KCLKQTY 155 (554)
Q Consensus 103 ~i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~---------------------------~~l~~~~ 155 (554)
.-++-.++++|+|.|+. =+|+++++.|.+.| |+++.++|.... +++++..
T Consensus 17 ~~Q~~L~~~~VlIiG~G-glGs~va~~La~aG--vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in 93 (338)
T PRK12475 17 EGQRKIREKHVLIVGAG-ALGAANAEALVRAG--IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN 93 (338)
T ss_pred HHHHhhcCCcEEEECCC-HHHHHHHHHHHHcC--CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence 34555778899999985 49999999999875 567887764321 1111111
Q ss_pred CCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCce
Q 042694 156 GKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKL 235 (554)
Q Consensus 156 ~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~ 235 (554)
..-+++.+..|++. +..+.+.+++|+||.+... +.. -..+-++|.+. -.+
T Consensus 94 -------p~v~i~~~~~~~~~-------~~~~~~~~~~DlVid~~D~--~~~------------r~~in~~~~~~--~ip 143 (338)
T PRK12475 94 -------SEVEIVPVVTDVTV-------EELEELVKEVDLIIDATDN--FDT------------RLLINDLSQKY--NIP 143 (338)
T ss_pred -------CCcEEEEEeccCCH-------HHHHHHhcCCCEEEEcCCC--HHH------------HHHHHHHHHHc--CCC
Confidence 12356677777652 5667778999999998632 211 11244666663 357
Q ss_pred EEEEeeceeccc
Q 042694 236 FVQVSTAYVNGQ 247 (554)
Q Consensus 236 ~v~vST~~v~~~ 247 (554)
+||.+....+|.
T Consensus 144 ~i~~~~~g~~G~ 155 (338)
T PRK12475 144 WIYGGCVGSYGV 155 (338)
T ss_pred EEEEEecccEEE
Confidence 899888766654
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.12 Score=49.26 Aligned_cols=129 Identities=15% Similarity=0.085 Sum_probs=80.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCC-ccEEEEEcc-------hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC-
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPD-VGKIFIINA-------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL- 181 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~-V~~i~~~~~-------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL- 181 (554)
|.++|||++.-||-.|+.+||+...+ |+--.|+.. .+-.++++-.++ ..-++.++..|++...--+
T Consensus 4 KvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~-----~~i~~~yvlvD~sNm~Sv~~ 78 (341)
T KOG1478|consen 4 KVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPK-----STIEVTYVLVDVSNMQSVFR 78 (341)
T ss_pred eEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCC-----ceeEEEEEEEehhhHHHHHH
Confidence 56899999999999999999985433 322223322 223344444443 2457888999998751100
Q ss_pred CHHHHHHHhcCccEEEEcCCCCCch----------------------------------hhHHHHHHHhchHHHHHHHHH
Q 042694 182 EEDLADVIAKEVDVIVNSAANTTFD----------------------------------ERYDIAIDINTRGPCRLMEFA 227 (554)
Q Consensus 182 s~~~~~~l~~~vdiViH~AA~v~~~----------------------------------~~~~~~~~~Nv~gt~~ll~la 227 (554)
...++.+-....|.|+-+||...+. +...+.+++||.|..-+++-.
T Consensus 79 A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l 158 (341)
T KOG1478|consen 79 ASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIREL 158 (341)
T ss_pred HHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhh
Confidence 0022333345899999999975321 245678899999987766543
Q ss_pred HH---cCCCceEEEEeecee
Q 042694 228 KQ---CNKLKLFVQVSTAYV 244 (554)
Q Consensus 228 ~~---~~~~k~~v~vST~~v 244 (554)
.. ...-..+|.+||..+
T Consensus 159 ~pll~~~~~~~lvwtSS~~a 178 (341)
T KOG1478|consen 159 EPLLCHSDNPQLVWTSSRMA 178 (341)
T ss_pred hhHhhcCCCCeEEEEeeccc
Confidence 22 123348899998654
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.012 Score=54.63 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=42.6
Q ss_pred cCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEc
Q 042694 109 KAKNFFVTGA----------------TGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVG 172 (554)
Q Consensus 109 ~~~~VlITGa----------------TGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~G 172 (554)
+|++||||+| ||-+|..|.+.++++|.+| .++..+. .+. ....+..+..
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V---~li~g~~--~~~----------~p~~~~~i~v 66 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEV---TLIHGPS--SLP----------PPPGVKVIRV 66 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EE---EEEE-TT--S--------------TTEEEEE-
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEE---EEEecCc--ccc----------ccccceEEEe
Confidence 4677777754 7899999999999999765 3332221 000 1235555554
Q ss_pred cCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCch
Q 042694 173 NVCENNLGLEEDLADVIAKEVDVIVNSAANTTFD 206 (554)
Q Consensus 173 Dl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~ 206 (554)
+-.+.- .+.....+.+.|++||+||...|.
T Consensus 67 ~sa~em----~~~~~~~~~~~Di~I~aAAVsDf~ 96 (185)
T PF04127_consen 67 ESAEEM----LEAVKELLPSADIIIMAAAVSDFR 96 (185)
T ss_dssp SSHHHH----HHHHHHHGGGGSEEEE-SB--SEE
T ss_pred cchhhh----hhhhccccCcceeEEEecchhhee
Confidence 432211 133344446789999999998874
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0035 Score=83.64 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=42.6
Q ss_pred CcchhHHHHhhcccceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee-----cccccee
Q 042694 11 VAPNKFVKAFENNCDLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLV 69 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~ 69 (554)
..+.+... +|++++..+.+ |||++|||||+|++|.++|++.+|+.+ ++.||+.
T Consensus 3605 ~~e~~l~~------i~~~vL~~~~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~ 3666 (3956)
T PRK12467 3605 EVEQQLAA------IWADVLGVEQVGVTDNFFELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIA 3666 (3956)
T ss_pred HHHHHHHH------HHHHHhCCCCCCCCcchhcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHH
Confidence 34455565 89977765544 999999999999999999999999988 3777764
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.0038 Score=75.94 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=37.3
Q ss_pred ceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee-----cccccee
Q 042694 25 DLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLV 69 (554)
Q Consensus 25 ~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~ 69 (554)
+|++++..+.+ |||++|||||+|++|.++|++.+|+.+ ++.||+.
T Consensus 986 ~~~~~l~~~~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~ 1039 (1296)
T PRK10252 986 AFSSLLGCDVVDADADFFALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVA 1039 (1296)
T ss_pred HHHHHhCCCCCCCCcCHHHcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHH
Confidence 79976664433 999999999999999999999999887 3667664
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.14 Score=48.21 Aligned_cols=113 Identities=14% Similarity=0.246 Sum_probs=71.5
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH---------------------------HHHHHHcC
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF---------------------------KCLKQTYG 156 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~---------------------------~~l~~~~~ 156 (554)
.++-.+..+|+|.|+.| +|..+++.|.+.| |+++.++|.... +++++..
T Consensus 13 ~q~~L~~s~VlviG~gg-lGsevak~L~~~G--Vg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN- 88 (198)
T cd01485 13 AQNKLRSAKVLIIGAGA-LGAEIAKNLVLAG--IDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN- 88 (198)
T ss_pred HHHHHhhCcEEEECCCH-HHHHHHHHHHHcC--CCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC-
Confidence 34446678999999988 9999999999865 678887764321 1111111
Q ss_pred CchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceE
Q 042694 157 KSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLF 236 (554)
Q Consensus 157 ~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~ 236 (554)
..-+++.+..++... .+....+.++.|+||-+... ... ...+-++|++. + .+|
T Consensus 89 ------p~v~i~~~~~~~~~~-----~~~~~~~~~~~dvVi~~~d~------~~~--------~~~ln~~c~~~-~-ip~ 141 (198)
T cd01485 89 ------PNVKLSIVEEDSLSN-----DSNIEEYLQKFTLVIATEEN------YER--------TAKVNDVCRKH-H-IPF 141 (198)
T ss_pred ------CCCEEEEEecccccc-----hhhHHHHHhCCCEEEECCCC------HHH--------HHHHHHHHHHc-C-CCE
Confidence 123566666665431 24456667889999976332 112 22355778873 4 589
Q ss_pred EEEeeceeccc
Q 042694 237 VQVSTAYVNGQ 247 (554)
Q Consensus 237 v~vST~~v~~~ 247 (554)
++.++.+.+|.
T Consensus 142 i~~~~~G~~G~ 152 (198)
T cd01485 142 ISCATYGLIGY 152 (198)
T ss_pred EEEEeecCEEE
Confidence 99988766664
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.004 Score=83.86 Aligned_cols=45 Identities=13% Similarity=0.010 Sum_probs=37.8
Q ss_pred ceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee-----cccccee
Q 042694 25 DLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLV 69 (554)
Q Consensus 25 ~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~ 69 (554)
+|++++..+.+ |||++|||||+|++|++++++++|+.+ ++.||+.
T Consensus 1646 iw~~vL~~~~i~~~d~Ff~lGGdSl~a~~l~~~~~~~~~~~l~~~~~f~~~tl~ 1699 (4334)
T PRK05691 1646 IWREVLGLPRVGLRDDFFALGGHSLLATQIVSRTRQACDVELPLRALFEASELG 1699 (4334)
T ss_pred HHHHHhCCCCCCCCCchHHhcccHHHHHHHHHHHHHHhCCCcchhhhhcCCcHH
Confidence 89977765544 999999999999999999999999887 3777663
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.15 Score=52.08 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=72.6
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHH--H-----------H-----HHHcC-Cchhhh-c
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFK--C-----------L-----KQTYG-KSYQAF-M 163 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~--~-----------l-----~~~~~-~~~~~~-~ 163 (554)
-++-.+..+|+|.|+ |.||+.+++.|.+.| |++|.++|....+ . + +.... +...+. .
T Consensus 18 ~Q~~L~~~~VlVvG~-GglGs~va~~La~aG--vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp 94 (339)
T PRK07688 18 GQQKLREKHVLIIGA-GALGTANAEMLVRAG--VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINS 94 (339)
T ss_pred HHHHhcCCcEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCC
Confidence 345567889999998 889999999999865 5688877643210 0 0 00000 000000 1
Q ss_pred cCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeece
Q 042694 164 LSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAY 243 (554)
Q Consensus 164 ~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~ 243 (554)
.-++..+..+++ ++....+.++.|+|+.+... + ..-..+-++|.+. + +++||.|+..
T Consensus 95 ~v~v~~~~~~~~-------~~~~~~~~~~~DlVid~~Dn--~------------~~r~~ln~~~~~~-~-iP~i~~~~~g 151 (339)
T PRK07688 95 DVRVEAIVQDVT-------AEELEELVTGVDLIIDATDN--F------------ETRFIVNDAAQKY-G-IPWIYGACVG 151 (339)
T ss_pred CcEEEEEeccCC-------HHHHHHHHcCCCEEEEcCCC--H------------HHHHHHHHHHHHh-C-CCEEEEeeee
Confidence 124556666664 35566778899999998542 2 1122355777763 3 6899999887
Q ss_pred eccc
Q 042694 244 VNGQ 247 (554)
Q Consensus 244 v~~~ 247 (554)
.+|.
T Consensus 152 ~~G~ 155 (339)
T PRK07688 152 SYGL 155 (339)
T ss_pred eeeE
Confidence 7764
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.27 Score=42.95 Aligned_cols=104 Identities=16% Similarity=0.264 Sum_probs=67.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCchhhhcc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSYQAFML 164 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~~~~~~ 164 (554)
.++|+|.|+ |-+|+.+++.|.+.| |+++.++|... .+++++.. ..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~G--v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n-------p~ 71 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSG--VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN-------PD 71 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHT--TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-------TT
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhC--CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc-------Cc
Confidence 468999997 669999999999976 46777665311 11222211 13
Q ss_pred CcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 165 SKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 165 ~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
-++..+..++. ++....+.+++|+||.|.... .....+.+.|++. -+++++.++...
T Consensus 72 ~~v~~~~~~~~-------~~~~~~~~~~~d~vi~~~d~~--------------~~~~~l~~~~~~~--~~p~i~~~~~g~ 128 (135)
T PF00899_consen 72 VEVEAIPEKID-------EENIEELLKDYDIVIDCVDSL--------------AARLLLNEICREY--GIPFIDAGVNGF 128 (135)
T ss_dssp SEEEEEESHCS-------HHHHHHHHHTSSEEEEESSSH--------------HHHHHHHHHHHHT--T-EEEEEEEETT
T ss_pred eeeeeeecccc-------cccccccccCCCEEEEecCCH--------------HHHHHHHHHHHHc--CCCEEEEEeecC
Confidence 46777777772 366777788999999986541 1123466777763 348888887655
Q ss_pred cc
Q 042694 245 NG 246 (554)
Q Consensus 245 ~~ 246 (554)
+|
T Consensus 129 ~G 130 (135)
T PF00899_consen 129 YG 130 (135)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0053 Score=82.07 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=37.4
Q ss_pred ceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee-----cccccee
Q 042694 25 DLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLV 69 (554)
Q Consensus 25 ~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~ 69 (554)
+|++++....+ |||++|||||+|++|++++++++|+.+ ++.||+.
T Consensus 1038 i~~~vL~~~~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~ 1091 (3956)
T PRK12467 1038 IWADVLKVERVGLTDNFFELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLA 1091 (3956)
T ss_pred HHHHHhCCCCCCCCCCchhccCccHHHHHHHHHHHHHhCCCcchHHhhccchHH
Confidence 78877665444 999999999999999999999999887 3666653
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.1 Score=52.57 Aligned_cols=115 Identities=16% Similarity=0.066 Sum_probs=71.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhcc-CcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFML-SKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~-~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
++|.|+||||.+|+.++..|+.++ -+..++++|.. +.+...-+ ..+... .++....+| +++..-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~-~~~elvLiDi~---~a~g~alD-L~~~~~~~~i~~~~~~----------~~~y~~ 65 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP-LVSELALYDIV---NTPGVAAD-LSHINTPAKVTGYLGP----------EELKKA 65 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CCcEEEEEecC---ccceeehH-hHhCCCcceEEEecCC----------CchHHh
Confidence 479999999999999999887644 34578888754 11111000 000000 112111111 222233
Q ss_pred hcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 190 AKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 190 ~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++++|+|+-+||..+ ..+.-.++.+.|+.-.+++.+..++. +.+.++.+=|
T Consensus 66 ~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvt 117 (310)
T cd01337 66 LKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIIS 117 (310)
T ss_pred cCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcc
Confidence 479999999999854 34567788999999999999888875 4555544433
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.006 Score=83.19 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=37.1
Q ss_pred ceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee-----cccccee
Q 042694 25 DLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLV 69 (554)
Q Consensus 25 ~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~ 69 (554)
+|++++..+.+ |||++|||||+|++|+++++++ |+.+ ++.||+.
T Consensus 3564 iw~~vL~~~~i~~~d~Ff~lGGdSl~a~~l~~~~~~~-g~~~~~~~~f~~~ti~ 3616 (5163)
T PRK12316 3564 IWADVLKLEQVGLTDNFFELGGDSIISLQVVSRARQA-GIRFTPKDLFQHQTIQ 3616 (5163)
T ss_pred HHHHHhCCCCCCCCCCchhcCCccHHHHHHHHHHHHc-CCCCCHHHHhcCCCHH
Confidence 89977766544 9999999999999999999988 8877 4777764
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.055 Score=54.12 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=52.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++|||| |-+|+.++..|.+.+. ++|+++++.. .++.++.... ... ...++.....|+.+. ++
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~--~~V~I~~R~~~~~~~a~~l~~~-l~~-~~~~~~~~~~d~~~~------~~ 192 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGA--KEITIFNIKDDFYERAEQTAEK-IKQ-EVPECIVNVYDLNDT------EK 192 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEeCCchHHHHHHHHHHH-Hhh-cCCCceeEEechhhh------hH
Confidence 46789999999 7799999999998764 4677765432 1333221110 000 112334456677654 56
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
.....+.+|+|||+-..
T Consensus 193 ~~~~~~~~DilINaTp~ 209 (289)
T PRK12548 193 LKAEIASSDILVNATLV 209 (289)
T ss_pred HHhhhccCCEEEEeCCC
Confidence 66666788999997654
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.11 Score=52.72 Aligned_cols=118 Identities=18% Similarity=0.111 Sum_probs=71.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCcc-----EEEEEcchh-HHHHHHHcCCchhh--hccCcEEEEEccCCCCCCCC
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVG-----KIFIINAEL-FKCLKQTYGKSYQA--FMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~-----~i~~~~~~~-~~~l~~~~~~~~~~--~~~~kv~~v~GDl~~~~lGL 181 (554)
+-+|.|+||+|++|+.++..|+..+ -+. .++++|... .+.++...-+.... .....+.+.
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~-~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~----------- 70 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE-LFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT----------- 70 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC-cccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-----------
Confidence 4589999999999999999998753 244 677776421 11111110000000 000111111
Q ss_pred CHHHHHHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 182 EEDLADVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 182 s~~~~~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
..+++.+ +++|+|+-+|+..+ ..++-.++...|+.-.+++.+...++...+.++.+-|
T Consensus 71 -~~~~~~~-~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 71 -TDPEEAF-KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred -cChHHHh-CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 1334444 78999999999744 3457778999999999999998887522155555544
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.07 Score=53.92 Aligned_cols=109 Identities=12% Similarity=0.030 Sum_probs=65.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
++|.|+||||++|.+++..|+..+. ...|++++... .+.+................ ...+.. + .+++.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~---~~~i~~-----~-~d~~~- 69 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRPKSLEKLKGLRLDIYDALAAAGI---DAEIKI-----S-SDLSD- 69 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECcccccccccccchhhhchhccCC---CcEEEE-----C-CCHHH-
Confidence 5799999999999999999998654 33677776421 12221111100000000000 001110 1 22444
Q ss_pred hcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHc
Q 042694 190 AKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQC 230 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~ 230 (554)
++++|+||-+++...- .++..++.+.|+.-.+++++...+.
T Consensus 70 l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~ 111 (309)
T cd05294 70 VAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEF 111 (309)
T ss_pred hCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999997543 3455678889999999998877664
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.026 Score=48.51 Aligned_cols=33 Identities=21% Similarity=0.514 Sum_probs=28.1
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
+|.|.||||++|+.|++.|.+ .|.+.-+.+..+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~-hp~~e~~~~~~~ 33 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAE-HPDFELVALVSS 33 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-TSTEEEEEEEES
T ss_pred CEEEECCCCHHHHHHHHHHhc-CCCccEEEeeee
Confidence 689999999999999999988 788876666654
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.0082 Score=81.93 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=38.0
Q ss_pred ceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee-----cccccee
Q 042694 25 DLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLV 69 (554)
Q Consensus 25 ~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~ 69 (554)
+|+++++.+.| |||++|||||+|++|+++|++++|+.+ ++.||+.
T Consensus 5080 i~~~vL~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~ 5133 (5163)
T PRK12316 5080 IWAEVLQLERVGLDDNFFELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLA 5133 (5163)
T ss_pred HHHHHhCCCCCCCCCChhhccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHH
Confidence 89977765544 999999999999999999999999887 3666664
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.12 Score=55.23 Aligned_cols=78 Identities=21% Similarity=0.177 Sum_probs=49.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++|+|+|+++ +|..+++.|++.|.+| ...+....+.+.+... .....++.++.+|..+
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~~----~l~~~~~~~~~~~~~~----------- 63 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKV---ILTDEKEEDQLKEALE----ELGELGIELVLGEYPE----------- 63 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEE---EEEeCCchHHHHHHHH----HHHhcCCEEEeCCcch-----------
Confidence 3578999999988 9999999999999765 3333321112211110 0011245677777764
Q ss_pred HHhcCccEEEEcCCCCC
Q 042694 188 VIAKEVDVIVNSAANTT 204 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~ 204 (554)
....++|+||++++...
T Consensus 64 ~~~~~~d~vv~~~g~~~ 80 (450)
T PRK14106 64 EFLEGVDLVVVSPGVPL 80 (450)
T ss_pred hHhhcCCEEEECCCCCC
Confidence 23457999999988643
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.3 Score=48.35 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=69.0
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCc
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKS 158 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~ 158 (554)
-++-.+..+|+|.|+.| +|+.+++.|.+.| |+++.++|.... +++++..
T Consensus 21 ~Q~kL~~s~VlIvG~GG-LGs~va~~LA~aG--VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN--- 94 (287)
T PRK08223 21 EQQRLRNSRVAIAGLGG-VGGIHLLTLARLG--IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN--- 94 (287)
T ss_pred HHHHHhcCCEEEECCCH-HHHHHHHHHHHhC--CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC---
Confidence 34556788999999855 9999999999875 678887753221 1121111
Q ss_pred hhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEE
Q 042694 159 YQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQ 238 (554)
Q Consensus 159 ~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~ 238 (554)
..-+|+++...++. +....+.+++|+|+.+.-..++.. -..+-++|.+. -+++|+
T Consensus 95 ----P~v~V~~~~~~l~~-------~n~~~ll~~~DlVvD~~D~~~~~~------------r~~ln~~c~~~--~iP~V~ 149 (287)
T PRK08223 95 ----PELEIRAFPEGIGK-------ENADAFLDGVDVYVDGLDFFEFDA------------RRLVFAACQQR--GIPALT 149 (287)
T ss_pred ----CCCEEEEEecccCc-------cCHHHHHhCCCEEEECCCCCcHHH------------HHHHHHHHHHc--CCCEEE
Confidence 12356666666653 456677889999997643221111 12345667663 367888
Q ss_pred Eeeceecc
Q 042694 239 VSTAYVNG 246 (554)
Q Consensus 239 vST~~v~~ 246 (554)
.|.....+
T Consensus 150 ~~~~g~~g 157 (287)
T PRK08223 150 AAPLGMGT 157 (287)
T ss_pred EeccCCeE
Confidence 76654433
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.37 Score=45.47 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=69.1
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCc
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKS 158 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~ 158 (554)
.++..+..+|+|.|+ |-+|+.+++.|.+.| |+++.++|.... +++++..+
T Consensus 15 ~q~kl~~~~VlviG~-GglGs~ia~~La~~G--v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np-- 89 (202)
T TIGR02356 15 GQQRLLNSHVLIIGA-GGLGSPAALYLAGAG--VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS-- 89 (202)
T ss_pred HHHHhcCCCEEEECC-CHHHHHHHHHHHHcC--CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC--
Confidence 345567889999996 669999999999865 568887764311 11111111
Q ss_pred hhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEE
Q 042694 159 YQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQ 238 (554)
Q Consensus 159 ~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~ 238 (554)
.-++..+..++. ++....+.++.|+||-+.... +. -..+-++|.+. -+++++
T Consensus 90 -----~v~i~~~~~~i~-------~~~~~~~~~~~D~Vi~~~d~~------~~--------r~~l~~~~~~~--~ip~i~ 141 (202)
T TIGR02356 90 -----DIQVTALKERVT-------AENLELLINNVDLVLDCTDNF------AT--------RYLINDACVAL--GTPLIS 141 (202)
T ss_pred -----CCEEEEehhcCC-------HHHHHHHHhCCCEEEECCCCH------HH--------HHHHHHHHHHc--CCCEEE
Confidence 124444444442 355667778999999986431 11 12355777763 358999
Q ss_pred Eeeceeccc
Q 042694 239 VSTAYVNGQ 247 (554)
Q Consensus 239 vST~~v~~~ 247 (554)
.++...+|.
T Consensus 142 ~~~~g~~G~ 150 (202)
T TIGR02356 142 AAVVGFGGQ 150 (202)
T ss_pred EEeccCeEE
Confidence 887665554
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.3 Score=47.03 Aligned_cols=110 Identities=17% Similarity=0.165 Sum_probs=69.4
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~~ 159 (554)
++-.+..+|+|.|+ |-+|+++++.|.+.| |+++.++|.... +++++..+
T Consensus 16 q~~L~~~~VlivG~-GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np--- 89 (228)
T cd00757 16 QEKLKNARVLVVGA-GGLGSPAAEYLAAAG--VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP--- 89 (228)
T ss_pred HHHHhCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC---
Confidence 44567789999996 559999999999865 678887753211 11111111
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
.-++..+..+++ .+....+.+++|+||-|.... + .-..+-++|.+. -+++++.
T Consensus 90 ----~~~i~~~~~~i~-------~~~~~~~~~~~DvVi~~~d~~------~--------~r~~l~~~~~~~--~ip~i~~ 142 (228)
T cd00757 90 ----DVEIEAYNERLD-------AENAEELIAGYDLVLDCTDNF------A--------TRYLINDACVKL--GKPLVSG 142 (228)
T ss_pred ----CCEEEEecceeC-------HHHHHHHHhCCCEEEEcCCCH------H--------HHHHHHHHHHHc--CCCEEEE
Confidence 124555555542 356677788999999986642 1 112356777763 3688988
Q ss_pred eeceeccc
Q 042694 240 STAYVNGQ 247 (554)
Q Consensus 240 ST~~v~~~ 247 (554)
++....|.
T Consensus 143 g~~g~~g~ 150 (228)
T cd00757 143 AVLGFEGQ 150 (228)
T ss_pred EeccCEEE
Confidence 87655443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.12 Score=52.86 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=27.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
+++|+|.||||++|..|++.|.++++.+.++..+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~ 35 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLA 35 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEE
Confidence 46899999999999999999988765544555553
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.32 Score=50.14 Aligned_cols=109 Identities=21% Similarity=0.097 Sum_probs=69.7
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~ 159 (554)
++-++..+|+|.|+ |-+|+.+++.|.+.| |+++.++|... .+++++..+
T Consensus 23 q~~L~~~~VlivG~-GGlGs~~a~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np--- 96 (355)
T PRK05597 23 QQSLFDAKVAVIGA-GGLGSPALLYLAGAG--VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP--- 96 (355)
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC---
Confidence 44567889999998 559999999999865 67888765321 122222221
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHH-HHHHHHHcCCCceEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCR-LMEFAKQCNKLKLFVQ 238 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~-ll~la~~~~~~k~~v~ 238 (554)
.-+++++...++. +....+++++|+|+.|... + .++. +-++|.+ .-++||+
T Consensus 97 ----~v~v~~~~~~i~~-------~~~~~~~~~~DvVvd~~d~--~-------------~~r~~~n~~c~~--~~ip~v~ 148 (355)
T PRK05597 97 ----DVKVTVSVRRLTW-------SNALDELRDADVILDGSDN--F-------------DTRHLASWAAAR--LGIPHVW 148 (355)
T ss_pred ----CcEEEEEEeecCH-------HHHHHHHhCCCEEEECCCC--H-------------HHHHHHHHHHHH--cCCCEEE
Confidence 2355666655543 4555677899999998754 2 1222 4456665 3468999
Q ss_pred Eeeceeccc
Q 042694 239 VSTAYVNGQ 247 (554)
Q Consensus 239 vST~~v~~~ 247 (554)
.++....|.
T Consensus 149 ~~~~g~~g~ 157 (355)
T PRK05597 149 ASILGFDAQ 157 (355)
T ss_pred EEEecCeEE
Confidence 887666554
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.19 Score=50.99 Aligned_cols=119 Identities=17% Similarity=0.097 Sum_probs=71.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCcc-----EEEEEcchh-HHHHHHHcCCchhh--hccCcEEEEEccCCCCCCC
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVG-----KIFIINAEL-FKCLKQTYGKSYQA--FMLSKLVPAVGNVCENNLG 180 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~-----~i~~~~~~~-~~~l~~~~~~~~~~--~~~~kv~~v~GDl~~~~lG 180 (554)
++++|.|+||+|.+|+.++..|+..+- +. .++++|... .++++...-+.... ....++.+.
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~-~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~---------- 71 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDM-LGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT---------- 71 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhh-cCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe----------
Confidence 457899999999999999999886432 33 677776421 11111100000000 001112111
Q ss_pred CCHHHHHHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 181 LEEDLADVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 181 Ls~~~~~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
.++++.+ +++|+|+-+|+..+ ..++-.++...|+.-.+++.+...++...+.++.+-|
T Consensus 72 --~~~y~~~-~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 72 --DDPNVAF-KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred --cChHHHh-CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 1334443 79999999998643 4567788899999999999988887433344444444
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.052 Score=52.23 Aligned_cols=68 Identities=22% Similarity=0.372 Sum_probs=40.7
Q ss_pred EEe-cccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH---
Q 042694 114 FVT-GATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI--- 189 (554)
Q Consensus 114 lIT-GaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l--- 189 (554)
+|| .+||.+|.++++.|++.|.+| +++..+ ..+. +. . ...+|+.+. +..+.+
T Consensus 18 ~itN~SSGgIG~AIA~~la~~Ga~V---vlv~~~--~~l~---~~-------~---~~~~Dv~d~------~s~~~l~~~ 73 (227)
T TIGR02114 18 SITNHSTGHLGKIITETFLSAGHEV---TLVTTK--RALK---PE-------P---HPNLSIREI------ETTKDLLIT 73 (227)
T ss_pred eecCCcccHHHHHHHHHHHHCCCEE---EEEcCh--hhcc---cc-------c---CCcceeecH------HHHHHHHHH
Confidence 445 459999999999999988755 433321 0000 00 0 123566554 333332
Q ss_pred ----hcCccEEEEcCCCCCc
Q 042694 190 ----AKEVDVIVNSAANTTF 205 (554)
Q Consensus 190 ----~~~vdiViH~AA~v~~ 205 (554)
..++|++||+||...+
T Consensus 74 v~~~~g~iDiLVnnAgv~d~ 93 (227)
T TIGR02114 74 LKELVQEHDILIHSMAVSDY 93 (227)
T ss_pred HHHHcCCCCEEEECCEeccc
Confidence 2369999999997544
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.21 Score=58.08 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=53.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCcc------------EEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCC
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVG------------KIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCE 176 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~------------~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~ 176 (554)
++++|+|.|| |++|+..++.|.+. +++. .|.+.+.. .++.++... ...++.++..|.++
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~-~~~a~~la~------~~~~~~~v~lDv~D 638 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLY-LKDAKETVE------GIENAEAVQLDVSD 638 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhC-cCccccccccccccccEEEEECCC-HHHHHHHHH------hcCCCceEEeecCC
Confidence 4789999997 99999999999874 4442 24433422 222222111 11256678889887
Q ss_pred CCCCCCHHHHHHHhcCccEEEEcCCC
Q 042694 177 NNLGLEEDLADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 177 ~~lGLs~~~~~~l~~~vdiViH~AA~ 202 (554)
. +++..+.+++|+|+.|...
T Consensus 639 ~------e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 639 S------ESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred H------HHHHHhhcCCCEEEECCCc
Confidence 7 7777777889999999876
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.19 Score=50.50 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=63.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+.+|+|.|||||-|..|++.|.. .|++. +++..+.. -..+++..+. ..|... |-+..-+.+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~-Hp~ve-~~~~ss~~~~g~~~~~~~p~------------l~g~~~---l~~~~~~~~ 64 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAG-HPDVE-LILISSRERAGKPVSDVHPN------------LRGLVD---LPFQTIDPE 64 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhc-CCCeE-EEEeechhhcCCchHHhCcc------------cccccc---cccccCChh
Confidence 56899999999999999999987 68885 66554321 1223333322 122211 111112222
Q ss_pred H-HhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCC
Q 042694 188 V-IAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 188 ~-l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
. ..+++|+||-+-..- ...+++..... ++.+ +|=.|+.+=.-+. .+-|+.|..
T Consensus 65 ~~~~~~~DvvFlalPhg---------------~s~~~v~~l~~-~g~~-VIDLSadfR~~d~--~~ye~~Yg~ 118 (349)
T COG0002 65 KIELDECDVVFLALPHG---------------VSAELVPELLE-AGCK-VIDLSADFRLKDP--EVYEKWYGF 118 (349)
T ss_pred hhhcccCCEEEEecCch---------------hHHHHHHHHHh-CCCe-EEECCcccccCCH--HHHHHhhCC
Confidence 2 345799999886541 11223333332 2444 8888988765542 234555543
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.057 Score=55.04 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=29.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
+.+|.|+||||++|..|++.|.++.+.+..+..+.+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s 39 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLAS 39 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEEC
Confidence 368999999999999999999976555557776654
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.14 Score=52.61 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=57.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|.|.||||++|..+++.|.+ .|.++-+.++.+. .-+.+.+..+ ++.... ++.-. +.+.+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~-hP~~el~~l~~s~~sagk~~~~~~~---------~l~~~~-~~~~~-----~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLN-HPEVEITYLVSSRESAGKPVSEVHP---------HLRGLV-DLNLE-----PIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHc-CCCceEEEEeccchhcCCChHHhCc---------cccccC-Cceee-----cCCHHH
Confidence 4799999999999999999986 4676433343432 1111222111 111010 11111 112233
Q ss_pred HhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecc
Q 042694 189 IAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~ 246 (554)
+.+++|+||-|...- ...+++..+.+ .+ +++|=.|+.+=..
T Consensus 65 ~~~~~DvVf~alP~~---------------~s~~~~~~~~~-~G-~~VIDlS~~fR~~ 105 (346)
T TIGR01850 65 IAEDADVVFLALPHG---------------VSAELAPELLA-AG-VKVIDLSADFRLK 105 (346)
T ss_pred hhcCCCEEEECCCch---------------HHHHHHHHHHh-CC-CEEEeCChhhhcC
Confidence 445899999987652 24456666555 24 5788888876544
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.61 Score=45.42 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=68.7
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~~ 159 (554)
++..+..+|+|.|+ |-+|+.+++.|.+.| |+++.++|.... +++++..
T Consensus 27 Q~~L~~~~VliiG~-GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln---- 99 (245)
T PRK05690 27 QEKLKAARVLVVGL-GGLGCAASQYLAAAG--VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN---- 99 (245)
T ss_pred HHHhcCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC----
Confidence 45577889999998 779999999999865 678887753211 1111111
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
..-+++.+...+. ++....+.+++|+||.+.... + .-..+-++|.+. -+++|+.
T Consensus 100 ---p~v~i~~~~~~i~-------~~~~~~~~~~~DiVi~~~D~~------~--------~r~~ln~~~~~~--~ip~v~~ 153 (245)
T PRK05690 100 ---PHIAIETINARLD-------DDELAALIAGHDLVLDCTDNV------A--------TRNQLNRACFAA--KKPLVSG 153 (245)
T ss_pred ---CCCEEEEEeccCC-------HHHHHHHHhcCCEEEecCCCH------H--------HHHHHHHHHHHh--CCEEEEe
Confidence 1225555555443 356677788999999986431 1 112355677763 3678887
Q ss_pred eeceecc
Q 042694 240 STAYVNG 246 (554)
Q Consensus 240 ST~~v~~ 246 (554)
++....|
T Consensus 154 ~~~g~~G 160 (245)
T PRK05690 154 AAIRMEG 160 (245)
T ss_pred eeccCCc
Confidence 6654444
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.39 Score=50.19 Aligned_cols=109 Identities=20% Similarity=0.136 Sum_probs=70.6
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~ 159 (554)
++-.+..+|+|.|+.| +|+.+++.|.+.| |+++.++|... .+++++..
T Consensus 33 q~~L~~~~VlivG~GG-lG~~va~~La~~G--vg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n---- 105 (390)
T PRK07411 33 QKRLKAASVLCIGTGG-LGSPLLLYLAAAG--IGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN---- 105 (390)
T ss_pred HHHHhcCcEEEECCCH-HHHHHHHHHHHcC--CCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC----
Confidence 4456788999999855 9999999999865 67888775322 11222211
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHH-HHHHHHHcCCCceEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCR-LMEFAKQCNKLKLFVQ 238 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~-ll~la~~~~~~k~~v~ 238 (554)
..-+|+++...++. +....+++++|+|+.|.... + ++. +-++|.+ .-+++||
T Consensus 106 ---p~v~v~~~~~~~~~-------~~~~~~~~~~D~Vvd~~d~~------~---------~r~~ln~~~~~--~~~p~v~ 158 (390)
T PRK07411 106 ---PYCQVDLYETRLSS-------ENALDILAPYDVVVDGTDNF------P---------TRYLVNDACVL--LNKPNVY 158 (390)
T ss_pred ---CCCeEEEEecccCH-------HhHHHHHhCCCEEEECCCCH------H---------HHHHHHHHHHH--cCCCEEE
Confidence 12366667666654 34456678999999986541 1 222 3356665 3468998
Q ss_pred Eeeceeccc
Q 042694 239 VSTAYVNGQ 247 (554)
Q Consensus 239 vST~~v~~~ 247 (554)
.+...-+|.
T Consensus 159 ~~~~g~~g~ 167 (390)
T PRK07411 159 GSIFRFEGQ 167 (390)
T ss_pred EEEccCEEE
Confidence 888766654
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.56 Score=45.51 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=67.7
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~~ 159 (554)
++-.++.+|+|.|+ |-+|+.+++.|.+.| |+++.++|.... +++++..+
T Consensus 19 q~~L~~~~VlvvG~-GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp--- 92 (240)
T TIGR02355 19 QEALKASRVLIVGL-GGLGCAASQYLAAAG--VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINP--- 92 (240)
T ss_pred HHHHhCCcEEEECc-CHHHHHHHHHHHHcC--CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCC---
Confidence 44567789999997 559999999999865 678887754221 11111111
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
.-+++.+...+ +++....+.++.|+||.+... + + ....+-++|.+. -++||+.
T Consensus 93 ----~v~i~~~~~~i-------~~~~~~~~~~~~DlVvd~~D~--~----~--------~r~~ln~~~~~~--~ip~v~~ 145 (240)
T TIGR02355 93 ----HIAINPINAKL-------DDAELAALIAEHDIVVDCTDN--V----E--------VRNQLNRQCFAA--KVPLVSG 145 (240)
T ss_pred ----CcEEEEEeccC-------CHHHHHHHhhcCCEEEEcCCC--H----H--------HHHHHHHHHHHc--CCCEEEE
Confidence 12444444333 335667778899999998654 1 1 122345777763 4678887
Q ss_pred eeceecc
Q 042694 240 STAYVNG 246 (554)
Q Consensus 240 ST~~v~~ 246 (554)
++....|
T Consensus 146 ~~~g~~G 152 (240)
T TIGR02355 146 AAIRMEG 152 (240)
T ss_pred EecccEe
Confidence 7655444
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.46 Score=44.89 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=70.1
Q ss_pred hccCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+.+||++||+|-.- -|+-.+.+.|.++|-++ -.-........|+++..+. ...-.++++|++++ +
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL-~fTy~~e~l~krv~~la~~------~~s~~v~~cDV~~d------~ 69 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAEL-AFTYQGERLEKRVEELAEE------LGSDLVLPCDVTND------E 69 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEE-EEEeccHHHHHHHHHHHhh------ccCCeEEecCCCCH------H
Confidence 46799999999643 58889999999988765 2222334445555554332 11134689999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHH
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQ 229 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~ 229 (554)
..+.+++ +.|.++|+-|...- .+.+..+.++-+-+-..+.+.|+.
T Consensus 70 ~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~ 132 (259)
T COG0623 70 SIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARP 132 (259)
T ss_pred HHHHHHHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHH
Confidence 7776664 78999999987652 123444444444454455555544
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.61 Score=44.98 Aligned_cols=118 Identities=26% Similarity=0.285 Sum_probs=69.7
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHH--HHHHH-------cCCc---------hhh-hcc
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFK--CLKQT-------YGKS---------YQA-FML 164 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~--~l~~~-------~~~~---------~~~-~~~ 164 (554)
.++-.++.+|+|.|+ |-+|+.+++.|.+.| |++++++|....+ .+-+. .+.. ... ...
T Consensus 21 ~q~~L~~~~VlIiG~-GGlGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~ 97 (231)
T PRK08328 21 GQEKLKKAKVAVVGV-GGLGSPVAYYLAAAG--VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSD 97 (231)
T ss_pred HHHHHhCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCC
Confidence 345567889999997 459999999999865 6788887642211 01000 0000 000 011
Q ss_pred CcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 165 SKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 165 ~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
-++..+.+.++ ++....+.++.|+||.|... +.. -..+-++|.+. -.++|+.++.+.
T Consensus 98 v~v~~~~~~~~-------~~~~~~~l~~~D~Vid~~d~--~~~------------r~~l~~~~~~~--~ip~i~g~~~g~ 154 (231)
T PRK08328 98 IKIETFVGRLS-------EENIDEVLKGVDVIVDCLDN--FET------------RYLLDDYAHKK--GIPLVHGAVEGT 154 (231)
T ss_pred CEEEEEeccCC-------HHHHHHHHhcCCEEEECCCC--HHH------------HHHHHHHHHHc--CCCEEEEeeccC
Confidence 24555555443 35566778899999998654 111 11234566663 367898888766
Q ss_pred ccc
Q 042694 245 NGQ 247 (554)
Q Consensus 245 ~~~ 247 (554)
+|.
T Consensus 155 ~G~ 157 (231)
T PRK08328 155 YGQ 157 (231)
T ss_pred EEE
Confidence 664
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.15 Score=52.51 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=26.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII 143 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~ 143 (554)
+.+|.|+||||++|+.|++.|++ .+.+ ++..+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~-~p~~-el~~~ 34 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLAN-HPWF-EVTAL 34 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHc-CCCc-eEEEE
Confidence 36899999999999999999886 5666 66655
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.076 Score=55.24 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=50.1
Q ss_pred ccCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEE
Q 042694 108 LKAKNFFVTGA----------------TGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAV 171 (554)
Q Consensus 108 ~~~~~VlITGa----------------TGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~ 171 (554)
++|++|+|||| ||.+|..+.+.|...|.+| +++..+.-. .. ...+ ..
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V---~~~~g~~~~----~~--------~~~~--~~ 245 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADV---TLITGPVSL----LT--------PPGV--KS 245 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEE---EEeCCCCcc----CC--------CCCc--EE
Confidence 67899999998 5789999999999988754 443322100 01 1122 34
Q ss_pred ccCCCCCCCCCHHHH-HHHh----cCccEEEEcCCCCCc
Q 042694 172 GNVCENNLGLEEDLA-DVIA----KEVDVIVNSAANTTF 205 (554)
Q Consensus 172 GDl~~~~lGLs~~~~-~~l~----~~vdiViH~AA~v~~ 205 (554)
.|+... +++ +.+. .++|++||+||...|
T Consensus 246 ~~v~~~------~~~~~~~~~~~~~~~D~~i~~Aavsd~ 278 (390)
T TIGR00521 246 IKVSTA------EEMLEAALNELAKDFDIFISAAAVADF 278 (390)
T ss_pred EEeccH------HHHHHHHHHhhcccCCEEEEccccccc
Confidence 576655 444 4343 478999999998766
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.64 Score=43.64 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=68.4
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCc
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKS 158 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~ 158 (554)
-++-.+..+|+|.|+.| +|.++++.|...| |+++.++|.... +++++..+
T Consensus 15 ~Q~~L~~s~VlIiG~gg-lG~evak~La~~G--Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp-- 89 (197)
T cd01492 15 AQKRLRSARILLIGLKG-LGAEIAKNLVLSG--IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNP-- 89 (197)
T ss_pred HHHHHHhCcEEEEcCCH-HHHHHHHHHHHcC--CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCC--
Confidence 34456778999999888 9999999999865 678887764321 11222221
Q ss_pred hhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEE
Q 042694 159 YQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQ 238 (554)
Q Consensus 159 ~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~ 238 (554)
.-+++++...+.+ ....+.+++|+|+-+... .+. -..+-++|++. + .+|++
T Consensus 90 -----~v~i~~~~~~~~~--------~~~~~~~~~dvVi~~~~~------~~~--------~~~ln~~c~~~-~-ip~i~ 140 (197)
T cd01492 90 -----RVKVSVDTDDISE--------KPEEFFSQFDVVVATELS------RAE--------LVKINELCRKL-G-VKFYA 140 (197)
T ss_pred -----CCEEEEEecCccc--------cHHHHHhCCCEEEECCCC------HHH--------HHHHHHHHHHc-C-CCEEE
Confidence 1255555554442 123456789999977432 112 12344777763 4 47888
Q ss_pred Eeeceeccc
Q 042694 239 VSTAYVNGQ 247 (554)
Q Consensus 239 vST~~v~~~ 247 (554)
.++.+.+|.
T Consensus 141 ~~~~G~~G~ 149 (197)
T cd01492 141 TGVHGLFGF 149 (197)
T ss_pred EEecCCEEE
Confidence 888766654
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.52 Score=49.36 Aligned_cols=109 Identities=20% Similarity=0.139 Sum_probs=69.4
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~~ 159 (554)
++-.+..+|+|.|+. -+|+.++..|.+.| |+++.++|.... +++++..
T Consensus 37 q~~L~~~~VlviG~G-GlGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n---- 109 (392)
T PRK07878 37 QKRLKNARVLVIGAG-GLGSPTLLYLAAAG--VGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEIN---- 109 (392)
T ss_pred HHHHhcCCEEEECCC-HHHHHHHHHHHHcC--CCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhC----
Confidence 444677899999975 59999999999865 568887753211 1111111
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHH-HHHHHHHcCCCceEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCR-LMEFAKQCNKLKLFVQ 238 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~-ll~la~~~~~~k~~v~ 238 (554)
..-+|.++...+.. +....+++++|+|+.|... + .++. +-++|.+. -++||+
T Consensus 110 ---p~v~i~~~~~~i~~-------~~~~~~~~~~D~Vvd~~d~--~-------------~~r~~ln~~~~~~--~~p~v~ 162 (392)
T PRK07878 110 ---PLVNVRLHEFRLDP-------SNAVELFSQYDLILDGTDN--F-------------ATRYLVNDAAVLA--GKPYVW 162 (392)
T ss_pred ---CCcEEEEEeccCCh-------hHHHHHHhcCCEEEECCCC--H-------------HHHHHHHHHHHHc--CCCEEE
Confidence 11345556665543 4456677899999988643 1 1222 45667763 367999
Q ss_pred Eeeceeccc
Q 042694 239 VSTAYVNGQ 247 (554)
Q Consensus 239 vST~~v~~~ 247 (554)
.++...+|.
T Consensus 163 ~~~~g~~G~ 171 (392)
T PRK07878 163 GSIYRFEGQ 171 (392)
T ss_pred EEeccCEEE
Confidence 888777664
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.031 Score=63.45 Aligned_cols=27 Identities=7% Similarity=-0.013 Sum_probs=26.4
Q ss_pred cccccCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+||++|||||+|++|.++|++.+|+.+
T Consensus 571 ~f~~lG~dSl~av~l~~~l~~~~g~~l 597 (705)
T PRK06060 571 AFSELGFDSQMTVTLCKRLAAVTGLRL 597 (705)
T ss_pred ChhhcCchHHHHHHHHHHHHHHhCCCC
Confidence 899999999999999999999999988
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.096 Score=54.38 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=60.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH--HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF--KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~--~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-..++|.|.||||++|..|++.|++. |.+ +|..+.+... +.+.... .....+|..+. .. -+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~h-P~~-el~~l~s~~saG~~i~~~~-----------~~l~~~~~~~~-~~---~~ 98 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANH-PDF-EITVMTADRKAGQSFGSVF-----------PHLITQDLPNL-VA---VK 98 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhC-CCC-eEEEEEChhhcCCCchhhC-----------ccccCccccce-ec---CC
Confidence 35579999999999999999988875 665 5555543210 0111111 11122443211 00 11
Q ss_pred HHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccc
Q 042694 186 ADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~ 247 (554)
...+ +++|+||-+.+.- .+.+++.... .+ .++|-.|+.+-..+
T Consensus 99 ~~~~-~~~DvVf~Alp~~---------------~s~~i~~~~~--~g-~~VIDlSs~fRl~~ 141 (381)
T PLN02968 99 DADF-SDVDAVFCCLPHG---------------TTQEIIKALP--KD-LKIVDLSADFRLRD 141 (381)
T ss_pred HHHh-cCCCEEEEcCCHH---------------HHHHHHHHHh--CC-CEEEEcCchhccCC
Confidence 1223 6899999976541 3455665543 23 58999999887654
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.75 Score=47.92 Aligned_cols=110 Identities=20% Similarity=0.186 Sum_probs=67.9
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~~ 159 (554)
++-.++++|+|.|+ |-+|+.++..|.+.| |+++.++|.... +++++..+
T Consensus 130 q~~l~~~~VlvvG~-GG~Gs~ia~~La~~G--vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np--- 203 (376)
T PRK08762 130 QRRLLEARVLLIGA-GGLGSPAALYLAAAG--VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP--- 203 (376)
T ss_pred HHHHhcCcEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC---
Confidence 34467889999987 559999999999875 568887764311 11111111
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
.-++..+...+. ++....+.+++|+||.+..... . -..+-++|.+. -+++|+.
T Consensus 204 ----~v~v~~~~~~~~-------~~~~~~~~~~~D~Vv~~~d~~~------~--------r~~ln~~~~~~--~ip~i~~ 256 (376)
T PRK08762 204 ----DVQVEAVQERVT-------SDNVEALLQDVDVVVDGADNFP------T--------RYLLNDACVKL--GKPLVYG 256 (376)
T ss_pred ----CCEEEEEeccCC-------hHHHHHHHhCCCEEEECCCCHH------H--------HHHHHHHHHHc--CCCEEEE
Confidence 123444444433 3456677789999999875421 1 11255677763 4688998
Q ss_pred eeceeccc
Q 042694 240 STAYVNGQ 247 (554)
Q Consensus 240 ST~~v~~~ 247 (554)
++....|.
T Consensus 257 ~~~g~~g~ 264 (376)
T PRK08762 257 AVFRFEGQ 264 (376)
T ss_pred EeccCEEE
Confidence 87655443
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.97 Score=42.93 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=67.3
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHH--HHH------HHcCC--------chhh-hccCc
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFK--CLK------QTYGK--------SYQA-FMLSK 166 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~--~l~------~~~~~--------~~~~-~~~~k 166 (554)
.++-.+..+|+|.|+ |-+|+.+++.|.+.| |.++.++|....+ .+. +..+. .... ...-+
T Consensus 22 ~q~~L~~~~V~ViG~-GglGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~ 98 (212)
T PRK08644 22 LLEKLKKAKVGIAGA-GGLGSNIAVALARSG--VGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVE 98 (212)
T ss_pred HHHHHhCCCEEEECc-CHHHHHHHHHHHHcC--CCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCE
Confidence 445577889999997 669999999999865 5678877543110 000 00000 0000 01135
Q ss_pred EEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecc
Q 042694 167 LVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 167 v~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~ 246 (554)
++.+...++ ++....+++++|+||.|.-. + .....+.+.|.+.. -+++++.|...-++
T Consensus 99 v~~~~~~i~-------~~~~~~~~~~~DvVI~a~D~--~------------~~r~~l~~~~~~~~-~~p~I~~~~~~~~~ 156 (212)
T PRK08644 99 IEAHNEKID-------EDNIEELFKDCDIVVEAFDN--A------------ETKAMLVETVLEHP-GKKLVAASGMAGYG 156 (212)
T ss_pred EEEEeeecC-------HHHHHHHHcCCCEEEECCCC--H------------HHHHHHHHHHHHhC-CCCEEEeehhhccC
Confidence 555555544 34556677899999998422 1 11234566776631 35788876543333
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.55 Score=52.71 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=67.5
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-----HHHHH---HHcCCc--------hhh-hccCc
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-----FKCLK---QTYGKS--------YQA-FMLSK 166 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-----~~~l~---~~~~~~--------~~~-~~~~k 166 (554)
-++-.+..+|+|.|+ | +|+++++.|.+.|- |+++.++|... ..|.. ...+.. ... ...-+
T Consensus 101 ~Q~~L~~~~V~IvG~-G-lGs~~a~~LaraGv-vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~ 177 (722)
T PRK07877 101 EQERLGRLRIGVVGL-S-VGHAIAHTLAAEGL-CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLP 177 (722)
T ss_pred HHHHHhcCCEEEEEe-c-HHHHHHHHHHHccC-CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCE
Confidence 355577889999999 8 99999999998752 36788765321 11110 000000 000 01235
Q ss_pred EEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHH-HHHHHHcCCCceEEEEeec
Q 042694 167 LVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRL-MEFAKQCNKLKLFVQVSTA 242 (554)
Q Consensus 167 v~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~l-l~la~~~~~~k~~v~vST~ 242 (554)
|+++...++ ++..+.+++++|+|+.|.-. | .++.+ -+.|.+ .-+++|+-|+.
T Consensus 178 v~~~~~~i~-------~~n~~~~l~~~DlVvD~~D~--~-------------~~R~~ln~~a~~--~~iP~i~~~~~ 230 (722)
T PRK07877 178 VEVFTDGLT-------EDNVDAFLDGLDVVVEECDS--L-------------DVKVLLREAARA--RRIPVLMATSD 230 (722)
T ss_pred EEEEeccCC-------HHHHHHHhcCCCEEEECCCC--H-------------HHHHHHHHHHHH--cCCCEEEEcCC
Confidence 556665554 47788888999999998643 2 13334 455665 34578877753
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.61 Score=47.25 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=71.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++|.|+|| |.+|+.++..|+..+ -+..++++|. +..+........-. . ...++....+| +
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~-~~~el~L~D~~~~~~~g~~~Dl~~~~-~-~~~~~~i~~~~------------~ 68 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQG-IADELVIIDINKEKAEGDAMDLSHAV-P-FTSPTKIYAGD------------Y 68 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCCchhHHHHHHHHhhc-c-ccCCeEEEeCC------------H
Confidence 4679999998 999999999888754 3457888874 21111111111000 0 11233333222 3
Q ss_pred HHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 187 DVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
+. ++++|+||-+|+..+ ..++..++...|..-.+++++..++. +.+.++.+=|
T Consensus 69 ~~-~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvs 122 (315)
T PRK00066 69 SD-CKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVAS 122 (315)
T ss_pred HH-hCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcc
Confidence 33 479999999998743 34566788999999999988888774 4444444433
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.9 Score=47.08 Aligned_cols=110 Identities=17% Similarity=0.187 Sum_probs=68.8
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~~ 159 (554)
++-.+..+|+|.|+ |-+|+.++..|.+.| |+++.++|.... +++++..
T Consensus 36 q~~l~~~~VliiG~-GglG~~v~~~La~~G--vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n---- 108 (370)
T PRK05600 36 QERLHNARVLVIGA-GGLGCPAMQSLASAG--VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ---- 108 (370)
T ss_pred HHHhcCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC----
Confidence 44567889999997 559999999999865 568887653211 1111111
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
..-+++.+...++ ++....+++++|+||.|... +. .-..+-++|.+. -+++|+.
T Consensus 109 ---p~v~i~~~~~~i~-------~~~~~~~~~~~DlVid~~Dn--~~------------~r~~in~~~~~~--~iP~v~~ 162 (370)
T PRK05600 109 ---PDIRVNALRERLT-------AENAVELLNGVDLVLDGSDS--FA------------TKFLVADAAEIT--GTPLVWG 162 (370)
T ss_pred ---CCCeeEEeeeecC-------HHHHHHHHhCCCEEEECCCC--HH------------HHHHHHHHHHHc--CCCEEEE
Confidence 1124556655554 35566778899999998654 21 111344566653 3578888
Q ss_pred eeceeccc
Q 042694 240 STAYVNGQ 247 (554)
Q Consensus 240 ST~~v~~~ 247 (554)
+...-+|.
T Consensus 163 ~~~g~~G~ 170 (370)
T PRK05600 163 TVLRFHGE 170 (370)
T ss_pred EEecCEEE
Confidence 87655553
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=93.40 E-value=1 Score=43.37 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=29.7
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
+-++..+|+|.|+ |-+|+++++.|.+.| |.++.++|.
T Consensus 7 ~~L~~~~VlVvG~-GGvGs~va~~Lar~G--Vg~i~LvD~ 43 (231)
T cd00755 7 EKLRNAHVAVVGL-GGVGSWAAEALARSG--VGKLTLIDF 43 (231)
T ss_pred HHHhCCCEEEECC-CHHHHHHHHHHHHcC--CCEEEEECC
Confidence 3456789999997 559999999999865 678887764
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.62 Score=49.18 Aligned_cols=121 Identities=16% Similarity=0.110 Sum_probs=72.7
Q ss_pred hccCcEEEEecccccccHHHHHHHHhh---C---CCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCC
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRT---V---PDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENN 178 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~---~---~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~ 178 (554)
+.+.-+|.|+||+|.+|.+++..|+.. + .-+.++++++.. ..+...-........ ...++.+..+|
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~-~~~~v~i~~~~----- 170 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYP-LLREVSIGIDP----- 170 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhh-hcCceEEecCC-----
Confidence 344568999999999999999999864 1 223367776531 111111111000001 11233322222
Q ss_pred CCCCHHHHHHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 179 LGLEEDLADVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 179 lGLs~~~~~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++. ++++|+||-.||..+ ..+.-.++.+.|+.-.+++.+...+..+...++.+-|
T Consensus 171 -------ye~-~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 171 -------YEV-FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred -------HHH-hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 222 479999999999754 3456778899999999999998887323444444444
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.59 Score=47.16 Aligned_cols=114 Identities=16% Similarity=0.055 Sum_probs=69.6
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhcc-CcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFML-SKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~-~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
+|.|+||+|.+|+.++..|+..+ -+..+.++|... ..... .+..+... .++....+| +++...+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~-~~~elvL~Di~~---a~g~a-~DL~~~~~~~~i~~~~~~----------~~~~~~~ 65 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQP-YVSELSLYDIAG---AAGVA-ADLSHIPTAASVKGFSGE----------EGLENAL 65 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCC-CCcEEEEecCCC---CcEEE-chhhcCCcCceEEEecCC----------CchHHHc
Confidence 58999999999999999887653 445788877432 00000 00000000 011110111 1223345
Q ss_pred cCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 191 KEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 191 ~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
+++|+|+-+|+..+ ....-.++...|+.=.+++.+...+. ..+.++.+=|
T Consensus 66 ~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvs 116 (312)
T TIGR01772 66 KGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVIT 116 (312)
T ss_pred CCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 89999999999754 34567788999999999999888775 4555554444
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=92.71 E-value=1 Score=45.37 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=66.3
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCchhhhccCc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKSYQAFMLSK 166 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~~~~~~~~k 166 (554)
+|||.|+ |-+|..+++.|...| |++|.++|.... +++++.. ..-+
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~G--vg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN-------p~v~ 70 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTG--FGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN-------PNVK 70 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhc--CCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC-------CCCe
Confidence 5899997 669999999999876 578887753211 1111111 1236
Q ss_pred EEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecc
Q 042694 167 LVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 167 v~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~ 246 (554)
+..+.+++.+. ..-....++.|+|+.+.... ..-..+-++|... -++|+...|.+..|
T Consensus 71 V~~~~~~i~~~------~~~~~f~~~~DvVv~a~Dn~--------------~ar~~in~~c~~~--~ip~I~~gt~G~~G 128 (312)
T cd01489 71 IVAYHANIKDP------DFNVEFFKQFDLVFNALDNL--------------AARRHVNKMCLAA--DVPLIESGTTGFLG 128 (312)
T ss_pred EEEEeccCCCc------cchHHHHhcCCEEEECCCCH--------------HHHHHHHHHHHHC--CCCEEEEecCccee
Confidence 67777777754 22234567899999875431 1223455777763 46889888877766
Q ss_pred c
Q 042694 247 Q 247 (554)
Q Consensus 247 ~ 247 (554)
.
T Consensus 129 ~ 129 (312)
T cd01489 129 Q 129 (312)
T ss_pred E
Confidence 5
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.84 Score=47.37 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=70.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCcc-----EEEEEcch-hHHHHHHHcCCchhh--hccCcEEEEEccCCCCCCC
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVG-----KIFIINAE-LFKCLKQTYGKSYQA--FMLSKLVPAVGNVCENNLG 180 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~-----~i~~~~~~-~~~~l~~~~~~~~~~--~~~~kv~~v~GDl~~~~lG 180 (554)
+.-+|.|+||+|.+|.+++..|+..+- +. .+++++.+ ..++++...-+.... ....++.+..+|
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l-~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~------- 114 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEV-FGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDP------- 114 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccc-cCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCC-------
Confidence 346899999999999999999986432 22 34344211 111111111000000 011233322222
Q ss_pred CCHHHHHHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 181 LEEDLADVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 181 Ls~~~~~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++. ++++|+||-+|+..+ ..+.-.++...|+.-.+++.+...++.+...++.+-|
T Consensus 115 -----y~~-~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 115 -----YEV-FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred -----HHH-hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 222 479999999999754 3456778899999999999999888544555444444
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.28 Score=49.57 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=25.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
++|.|.| +|++|..+...|++.|++| .+|-.+
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V-~v~d~~ 34 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEV-RLWDAD 34 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCee-EEEeCC
Confidence 5799999 7999999999999988765 444333
|
|
| >PRK07081 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.12 Score=41.17 Aligned_cols=30 Identities=7% Similarity=0.011 Sum_probs=28.0
Q ss_pred ccccccccCCchhHHHHHHHHHhhhhceee
Q 042694 33 RSIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 33 ~~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+.+|+++|-|||.++.|...|.++||+.+
T Consensus 24 ~d~~l~dlGlDSl~~v~li~~lE~~f~I~i 53 (83)
T PRK07081 24 DDADLYEAGLSSLATVQLMLAIEDAFDIEI 53 (83)
T ss_pred CCCCHhhcCCCHHHHHHHHHHHHHHhCCcC
Confidence 345899999999999999999999999999
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.38 Score=51.38 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=50.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|+|.|+ |.+|+.+++.|.+.+.+| ++++. ...+.+++ ...+..+.||.+++ +.+..
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v---~vid~~~~~~~~~~~----------~~~~~~~~gd~~~~------~~l~~ 60 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDV---TVIDTDEERLRRLQD----------RLDVRTVVGNGSSP------DVLRE 60 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcE---EEEECCHHHHHHHHh----------hcCEEEEEeCCCCH------HHHHH
Confidence 47999997 999999999999877654 44443 22222221 12467889998876 77776
Q ss_pred H-hcCccEEEEcCC
Q 042694 189 I-AKEVDVIVNSAA 201 (554)
Q Consensus 189 l-~~~vdiViH~AA 201 (554)
+ .+++|+|+-+..
T Consensus 61 ~~~~~a~~vi~~~~ 74 (453)
T PRK09496 61 AGAEDADLLIAVTD 74 (453)
T ss_pred cCCCcCCEEEEecC
Confidence 6 678998887654
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=92.07 E-value=2.3 Score=39.02 Aligned_cols=110 Identities=19% Similarity=0.178 Sum_probs=61.3
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH--HHHH------HHcCC--------chhh-hccCcEEEEEccC
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF--KCLK------QTYGK--------SYQA-FMLSKLVPAVGNV 174 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~--~~l~------~~~~~--------~~~~-~~~~kv~~v~GDl 174 (554)
+|+|.|+ |-+|+.+++.|.+.| |+++.++|.... ..+. +..+. .... ...-+++.+...+
T Consensus 1 ~VlViG~-GglGs~ia~~La~~G--vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~ 77 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSG--VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKI 77 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcC--CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeec
Confidence 4899996 669999999999865 567887754321 0000 00000 0000 0123555555554
Q ss_pred CCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecc
Q 042694 175 CENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 175 ~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~ 246 (554)
. ++....+++++|+||.+... +. .-..+.+.|.+. .-.+|++-+..+-++
T Consensus 78 ~-------~~~~~~~l~~~DlVi~~~d~--~~------------~r~~i~~~~~~~-~~ip~i~~~~~~~~~ 127 (174)
T cd01487 78 D-------ENNLEGLFGDCDIVVEAFDN--AE------------TKAMLAESLLGN-KNKPVVCASGMAGFG 127 (174)
T ss_pred C-------hhhHHHHhcCCCEEEECCCC--HH------------HHHHHHHHHHHH-CCCCEEEEehhhccC
Confidence 3 34566777899999998433 21 112356666653 235777765444333
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.32 Score=49.78 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=26.3
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
+|+|.||||++|..|++.|.++++.+.++..+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~a 33 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLA 33 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEe
Confidence 489999999999999999887666555665543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.61 Score=47.91 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=26.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
+++|+|.||||++|+.+++.|.+ .+.++-+.+.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~-~p~~elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLN-HPEVEIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHc-CCCceEEEEEC
Confidence 46899999999999999999986 45663333333
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.92 Score=47.92 Aligned_cols=118 Identities=14% Similarity=0.039 Sum_probs=72.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhh---CC--CccEEEEEcch-hHHHHHHHcCCc---hhhhccCcEEEEEccCCCCCC
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRT---VP--DVGKIFIINAE-LFKCLKQTYGKS---YQAFMLSKLVPAVGNVCENNL 179 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~---~~--~V~~i~~~~~~-~~~~l~~~~~~~---~~~~~~~kv~~v~GDl~~~~l 179 (554)
+.-+|+||||+|.+|.+|+-.+.+- |+ .| .+++++.+ ..+.++...-+. ... ....+.+..+|
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v-~L~LlDi~~~~~~l~G~amDL~D~a~p-ll~~v~i~~~~------ 193 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEI-SIHLLDSPENLEKLKGLVMEVEDLAFP-LLRGISVTTDL------ 193 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeE-EEEEEcCCCchhhHHHHHHHHHHhHHh-hcCCcEEEECC------
Confidence 3458999999999999999999761 22 23 45566642 223332221110 001 12233333222
Q ss_pred CCCHHHHHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCC-CceEEEEee
Q 042694 180 GLEEDLADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNK-LKLFVQVST 241 (554)
Q Consensus 180 GLs~~~~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~-~k~~v~vST 241 (554)
+ .-++++|+||-+|+..+- .+.-.++.+.|+.-.+.+.+...+... -.+++-+-|
T Consensus 194 ------~-ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 194 ------D-VAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred ------H-HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 2 235799999999997543 456778899999999999988877533 144554544
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.9 Score=48.25 Aligned_cols=115 Identities=17% Similarity=0.264 Sum_probs=67.6
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHH--HHHHc-------CCc--------hhh-hccC
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKC--LKQTY-------GKS--------YQA-FMLS 165 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~--l~~~~-------~~~--------~~~-~~~~ 165 (554)
.++-.++.+|+|.|+ |-+|+.+++.|.+.| |+++.++|...++. +.++. +.. ..+ ...-
T Consensus 37 ~Q~kL~~~~VlIvG~-GGlGs~va~~Lar~G--VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~ 113 (679)
T PRK14851 37 EQERLAEAKVAIPGM-GGVGGVHLITMVRTG--IGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFL 113 (679)
T ss_pred HHHHHhcCeEEEECc-CHHHHHHHHHHHHhC--CCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCC
Confidence 455577899999996 559999999999975 57888765321110 00000 000 000 0123
Q ss_pred cEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeec
Q 042694 166 KLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTA 242 (554)
Q Consensus 166 kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~ 242 (554)
+|+++...++ ++....+++++|+||.+.-...+.. -..+.+.|.+. + .++|+.+..
T Consensus 114 ~I~~~~~~i~-------~~n~~~~l~~~DvVid~~D~~~~~~------------r~~l~~~c~~~-~-iP~i~~g~~ 169 (679)
T PRK14851 114 EITPFPAGIN-------ADNMDAFLDGVDVVLDGLDFFQFEI------------RRTLFNMAREK-G-IPVITAGPL 169 (679)
T ss_pred eEEEEecCCC-------hHHHHHHHhCCCEEEECCCCCcHHH------------HHHHHHHHHHC-C-CCEEEeecc
Confidence 5666666554 3667788899999998754322211 12356677763 4 467776543
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.39 Score=42.04 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=50.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++++|+|.|| |-.|+.++..|...+ +++|+++++.. .+.+.+..+ ...+.++.. ++
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g--~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~-----------~~ 68 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALG--AKEITIVNRTPERAEALAEEFG-------GVNIEAIPL-----------ED 68 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTT--SSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEG-----------GG
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHcC-------ccccceeeH-----------HH
Confidence 67899999997 669999999999865 46788887542 223333321 123444432 23
Q ss_pred HHHHhcCccEEEEcCCCCCc
Q 042694 186 ADVIAKEVDVIVNSAANTTF 205 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~ 205 (554)
+.....++|+||++.+....
T Consensus 69 ~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 69 LEEALQEADIVINATPSGMP 88 (135)
T ss_dssp HCHHHHTESEEEE-SSTTST
T ss_pred HHHHHhhCCeEEEecCCCCc
Confidence 33566789999999876544
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=91.73 E-value=1.5 Score=42.24 Aligned_cols=104 Identities=17% Similarity=0.236 Sum_probs=65.3
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCchhhhccCc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKSYQAFMLSK 166 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~~~~~~~~k 166 (554)
+|+|.|+ |-+|..+++.|...| |+++.++|.... +++++.. ..-+
T Consensus 1 kVlvvG~-GGlG~eilk~La~~G--vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~n-------p~v~ 70 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMG--FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRN-------PNCK 70 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHC-------CCCE
Confidence 4899996 559999999999865 678887653211 1111111 1236
Q ss_pred EEEEEccCCCCCCCCCHHH-HHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceec
Q 042694 167 LVPAVGNVCENNLGLEEDL-ADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVN 245 (554)
Q Consensus 167 v~~v~GDl~~~~lGLs~~~-~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~ 245 (554)
+.++.+++... ++ -....++.|+|+.+... +..-+.+-++|... -+++++.+|.+-.
T Consensus 71 i~~~~~~i~~~------~~~~~~f~~~~DvVi~a~Dn--------------~~aR~~ln~~c~~~--~iplI~~g~~G~~ 128 (234)
T cd01484 71 VVPYQNKVGPE------QDFNDTFFEQFHIIVNALDN--------------IIARRYVNGMLIFL--IVPLIESGTEGFK 128 (234)
T ss_pred EEEEeccCChh------hhchHHHHhCCCEEEECCCC--------------HHHHHHHHHHHHHc--CCCEEEEcccCCc
Confidence 77777777543 22 23566899999987443 12233466777764 3688888886665
Q ss_pred cc
Q 042694 246 GQ 247 (554)
Q Consensus 246 ~~ 247 (554)
|.
T Consensus 129 G~ 130 (234)
T cd01484 129 GN 130 (234)
T ss_pred eE
Confidence 54
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.27 Score=50.39 Aligned_cols=35 Identities=9% Similarity=0.172 Sum_probs=28.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
..+|.|.||||++|..|++.|.++++.+..+..+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la 41 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA 41 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE
Confidence 46899999999999999999987665555666554
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.39 Score=48.07 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=23.3
Q ss_pred EEEEecccccccHHHHHHHHhhCCCcc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVG 138 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~ 138 (554)
+|.|.|||||.|..|++.|.+ .|+++
T Consensus 3 ~v~IvGasGy~G~el~rlL~~-HP~~e 28 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSG-RDDIE 28 (310)
T ss_pred eEEEECCCChhHHHHHHHHhC-CCCeE
Confidence 699999999999999999987 58873
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.5 Score=44.25 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=71.0
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCch--hhhc-cCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSY--QAFM-LSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~--~~~~-~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+|.|.|+ |.+|..++..|+.++ -+..++++|... ++.+...-+.. .... ..++....+| ++.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~-~~a~g~a~DL~~~~~~~~~~~~~i~~~~------------y~~ 65 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALG-LFSEIVLIDVNE-GVAEGEALDFHHATALTYSTNTKIRAGD------------YDD 65 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCc-chhhHHHHHHHhhhccCCCCCEEEEECC------------HHH
Confidence 4789998 999999999998753 456788887410 11111100000 0001 1234334444 332
Q ss_pred HhcCccEEEEcCCCCCc-hhh--HHHHHHHhchHHHHHHHHHHHcCCCceEEEEeec
Q 042694 189 IAKEVDVIVNSAANTTF-DER--YDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTA 242 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~-~~~--~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~ 242 (554)
++++|+|+-+|+..+- .+. -.++...|+.=.+++.+...+. +...++.+-|-
T Consensus 66 -~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsN 120 (307)
T cd05290 66 -CADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITN 120 (307)
T ss_pred -hCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecC
Confidence 4799999999997543 333 3678899999999999998885 56666666553
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.46 Score=46.62 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=24.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
++|.|+|++|.+|+.+++.+.+ .++++-+.+++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~-~~~~elvav~d 34 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEA-AEDLELVAAVD 34 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 5899999999999999987765 35553333444
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=91.30 E-value=2.2 Score=42.45 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=65.1
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCchh
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSYQ 160 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~~ 160 (554)
+-....+|||.|+.| ||..+++.|...| |++|.+.|... .+++++..+
T Consensus 15 ~kL~~s~VLIvG~gG-LG~EiaKnLalaG--Vg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp---- 87 (286)
T cd01491 15 KKLQKSNVLISGLGG-LGVEIAKNLILAG--VKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP---- 87 (286)
T ss_pred HHHhcCcEEEEcCCH-HHHHHHHHHHHcC--CCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCC----
Confidence 335667899999866 9999999999865 56888765321 112222221
Q ss_pred hhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEe
Q 042694 161 AFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVS 240 (554)
Q Consensus 161 ~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vS 240 (554)
.-+|.++.+++. + ....+.|+|+-+... ++... .+-++|++. + .+|++..
T Consensus 88 ---~V~V~~~~~~~~-------~----~~l~~fdvVV~~~~~------~~~~~--------~in~~c~~~-~-ipfI~a~ 137 (286)
T cd01491 88 ---YVPVTVSTGPLT-------T----DELLKFQVVVLTDAS------LEDQL--------KINEFCHSP-G-IKFISAD 137 (286)
T ss_pred ---CCEEEEEeccCC-------H----HHHhcCCEEEEecCC------HHHHH--------HHHHHHHHc-C-CEEEEEe
Confidence 234555555421 2 244688999987542 22222 345777762 3 5899988
Q ss_pred eceeccc
Q 042694 241 TAYVNGQ 247 (554)
Q Consensus 241 T~~v~~~ 247 (554)
|.+.+|.
T Consensus 138 ~~G~~G~ 144 (286)
T cd01491 138 TRGLFGS 144 (286)
T ss_pred ccccEEE
Confidence 8777765
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.37 Score=48.44 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=30.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
+++|.|.||||-+|+.+++.|-++.+.+..++.+.+
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS 36 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLAS 36 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEec
Confidence 368999999999999999999987788876776653
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.93 Score=39.19 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=23.0
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEE
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFII 143 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~ 143 (554)
|.|.|+||.||+.-++-+-+ .++--+|+.+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~-~~d~f~v~~L 30 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRK-HPDKFEVVAL 30 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHH-CTTTEEEEEE
T ss_pred CEEEcCCcHHHHHHHHHHHh-CCCceEEEEE
Confidence 67999999999999988776 4533367755
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=90.53 E-value=1.4 Score=37.96 Aligned_cols=88 Identities=20% Similarity=0.338 Sum_probs=48.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCC-CCCCC-CHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCE-NNLGL-EEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~-~~lGL-s~~~~~~ 188 (554)
++|.|.|++|-+|+.+++.+++. +++.-+-.++...-+ ..+... |++.. ...|. -.++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~~~----~~g~d~------------g~~~~~~~~~~~v~~~l~~ 63 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKPSA----KVGKDV------------GELAGIGPLGVPVTDDLEE 63 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTTST----TTTSBC------------HHHCTSST-SSBEBS-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCCcc----cccchh------------hhhhCcCCcccccchhHHH
Confidence 47999999999999999999983 455223333332100 000000 01000 00110 0156677
Q ss_pred HhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHc
Q 042694 189 IAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC 230 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~ 230 (554)
+.+++|+||++.- -.++...++.|.+.
T Consensus 64 ~~~~~DVvIDfT~---------------p~~~~~~~~~~~~~ 90 (124)
T PF01113_consen 64 LLEEADVVIDFTN---------------PDAVYDNLEYALKH 90 (124)
T ss_dssp HTTH-SEEEEES----------------HHHHHHHHHHHHHH
T ss_pred hcccCCEEEEcCC---------------hHHhHHHHHHHHhC
Confidence 7778999999751 13456678888875
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=3.4 Score=40.64 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=29.6
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
.+.+++.+|+|.|+ |-+|+++++.|.+.| |+++.++|
T Consensus 25 ~~kL~~s~VlVvG~-GGVGs~vae~Lar~G--Vg~itLiD 61 (268)
T PRK15116 25 LQLFADAHICVVGI-GGVGSWAAEALARTG--IGAITLID 61 (268)
T ss_pred HHHhcCCCEEEECc-CHHHHHHHHHHHHcC--CCEEEEEe
Confidence 34467789999996 569999999999975 56788765
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=2.7 Score=48.44 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=68.9
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHH-------------------------HHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFK-------------------------CLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~-------------------------~l~~~~~~~~ 159 (554)
++-.+..+|+|.|+.| +|+.+++.|.+.| |+++.++|...++ ++++-.
T Consensus 327 Q~kL~~srVlVvGlGG-lGs~ia~~LAraG--VG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~IN---- 399 (989)
T PRK14852 327 QRRLLRSRVAIAGLGG-VGGIHLMTLARTG--IGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVN---- 399 (989)
T ss_pred HHHHhcCcEEEECCcH-HHHHHHHHHHHcC--CCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHC----
Confidence 4456778999999755 9999999999875 6788876532211 111111
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
..-+|+++...+ +++....+++++|+||.+.-...+. ..+.+.+.|.+. -.++|+.
T Consensus 400 ---P~v~I~~~~~~I-------~~en~~~fl~~~DiVVDa~D~~~~~------------~rr~l~~~c~~~--~IP~I~a 455 (989)
T PRK14852 400 ---PFLDIRSFPEGV-------AAETIDAFLKDVDLLVDGIDFFALD------------IRRRLFNRALEL--GIPVITA 455 (989)
T ss_pred ---CCCeEEEEecCC-------CHHHHHHHhhCCCEEEECCCCccHH------------HHHHHHHHHHHc--CCCEEEe
Confidence 122555555544 3467778889999999875432221 123456667653 3578887
Q ss_pred eeceecc
Q 042694 240 STAYVNG 246 (554)
Q Consensus 240 ST~~v~~ 246 (554)
++....|
T Consensus 456 g~~G~~g 462 (989)
T PRK14852 456 GPLGYSC 462 (989)
T ss_pred eccccCe
Confidence 7754443
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=90.46 E-value=3.6 Score=36.18 Aligned_cols=105 Identities=16% Similarity=0.198 Sum_probs=63.6
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH---------------------HHHHHHcCCchhhh-ccCcEEE
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF---------------------KCLKQTYGKSYQAF-MLSKLVP 169 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~---------------------~~l~~~~~~~~~~~-~~~kv~~ 169 (554)
+|+|.|+ |=+|+.+++.|.+.| ++++.++|.... +.+++.. ... ..-++..
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~G--v~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l----~~~~p~v~i~~ 73 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSG--VGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRL----NELNPGVNVTA 73 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCC--CCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHH----HHHCCCcEEEE
Confidence 4899997 779999999999865 467887753210 0011110 000 1235555
Q ss_pred EEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecc
Q 042694 170 AVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 170 v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~ 246 (554)
+..++... ....+.++.|+||-+... + .....+.++|++. -.+|+.+++....+
T Consensus 74 ~~~~~~~~-------~~~~~~~~~diVi~~~d~--~------------~~~~~l~~~~~~~--~i~~i~~~~~g~~g 127 (143)
T cd01483 74 VPEGISED-------NLDDFLDGVDLVIDAIDN--I------------AVRRALNRACKEL--GIPVIDAGGLGLGG 127 (143)
T ss_pred EeeecChh-------hHHHHhcCCCEEEECCCC--H------------HHHHHHHHHHHHc--CCCEEEEcCCCcEE
Confidence 65555433 235666899999998765 1 1233466888874 35788888765444
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.29 E-value=1.9 Score=43.52 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=68.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|.|.|+ |.+|+.++..|+..+. ...|++++.. ..+.+....... .......+....+ +++.
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~-~~ei~l~D~~~~~~~~~a~dL~~~-~~~~~~~~~i~~~------------~~~~ 65 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGI-ADELVLIDINEEKAEGEALDLEDA-LAFLPSPVKIKAG------------DYSD 65 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcchhhHhHhhHHHH-hhccCCCeEEEcC------------CHHH
Confidence 37899996 9999999999988653 2367777642 111111111000 0000112222211 1233
Q ss_pred HhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 189 IAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++++|+||.+++..+- .++-.++.+.|+.-.+++.+..++. +.+.++.+=|
T Consensus 66 -l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvs 117 (306)
T cd05291 66 -CKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVAS 117 (306)
T ss_pred -hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 3799999999987543 3456688899999999999998875 4455544444
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >smart00823 PKS_PP Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.19 Score=39.16 Aligned_cols=30 Identities=7% Similarity=-0.047 Sum_probs=27.3
Q ss_pred ccccccccCCchhHHHHHHHHHhhhhceee
Q 042694 33 RSIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 33 ~~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+.+||++|+||+.++.+...+++.+++.+
T Consensus 35 ~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i 64 (86)
T smart00823 35 PDRPFRDLGLDSLTAVELRNRLEAATGLRL 64 (86)
T ss_pred CCCCHHHcCchHHHHHHHHHHHHHHHCCCC
Confidence 344999999999999999999999999887
|
Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311. |
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=90.14 E-value=2.9 Score=44.15 Aligned_cols=113 Identities=11% Similarity=0.057 Sum_probs=67.7
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~~ 159 (554)
++.....+|+|.|++| +|..+++-|... .|+++.++|.... +++++..+
T Consensus 15 Q~~L~~s~VlliG~gg-lGsEilKNLvL~--GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp--- 88 (425)
T cd01493 15 QAALESAHVCLLNATA-TGTEILKNLVLP--GIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNP--- 88 (425)
T ss_pred HHHHhhCeEEEEcCcH-HHHHHHHHHHHc--CCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCC---
Confidence 3445677999999888 999999999974 5788887764321 11222111
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
.-++.++..++..- .+.-..+.++.|+||-+... ... ...+.++|.+. -.+|+++
T Consensus 89 ----~V~i~~~~e~~~~l-----l~~~~~f~~~fdiVI~t~~~------~~~--------~~~L~~~c~~~--~iPlI~~ 143 (425)
T cd01493 89 ----DVNGSAVEESPEAL-----LDNDPSFFSQFTVVIATNLP------EST--------LLRLADVLWSA--NIPLLYV 143 (425)
T ss_pred ----CCEEEEEecccchh-----hhhHHHHhcCCCEEEECCCC------HHH--------HHHHHHHHHHc--CCCEEEE
Confidence 12334454443321 01223456788888843211 111 22356777763 4589999
Q ss_pred eeceecccc
Q 042694 240 STAYVNGQR 248 (554)
Q Consensus 240 ST~~v~~~~ 248 (554)
+|.+.+|.-
T Consensus 144 ~s~G~~G~v 152 (425)
T cd01493 144 RSYGLYGYI 152 (425)
T ss_pred ecccCEEEE
Confidence 999988864
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.08 E-value=2.4 Score=42.82 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=69.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|.|+|| |.+|..++..|+..+ -...++++|... .+........- .. ......+..+ .+++.
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~-~~~el~LiD~~~~~~~g~a~Dl~~~-~~-~~~~~~v~~~-----------~dy~~ 68 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKG-LADELVLVDVVEDKLKGEAMDLQHG-SA-FLKNPKIEAD-----------KDYSV 68 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCccHHHHHHHHHHHh-hc-cCCCCEEEEC-----------CCHHH
Confidence 48999996 999999999888754 445788887421 11111111000 00 0111111210 23344
Q ss_pred HhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEe
Q 042694 189 IAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVS 240 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vS 240 (554)
++++|+||-+|+..+- .+.-.++...|+.-.+++.+..++. +.+.++.+=
T Consensus 69 -~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivv 119 (312)
T cd05293 69 -TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVV 119 (312)
T ss_pred -hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEc
Confidence 4899999999887443 3456688899999999999998885 444444333
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=3.9 Score=42.22 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=65.5
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHH-----HH-----HHHcCC----------chhhhc
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFK-----CL-----KQTYGK----------SYQAFM 163 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~-----~l-----~~~~~~----------~~~~~~ 163 (554)
+++-+++.+|+|.|+.| +|+++++.|.+.| |++|.++|...++ |. .+..++ .... .
T Consensus 170 ~q~kL~~~~VaIVG~GG-~GS~Va~~LAR~G--VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~-i 245 (393)
T PRK06153 170 LSAKLEGQRIAIIGLGG-TGSYILDLVAKTP--VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSN-M 245 (393)
T ss_pred HHHHHhhCcEEEEcCCc-cHHHHHHHHHHcC--CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHH-h
Confidence 35667889999999755 9999999999975 6789987642211 10 011000 0011 2
Q ss_pred cCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 164 LSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 164 ~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
..++.++...+. ++... .+.++|+||-|.-. ..+-..+.++|.+. ..++|.++-
T Consensus 246 n~~I~~~~~~I~-------~~n~~-~L~~~DiV~dcvDn--------------~~aR~~ln~~a~~~--gIP~Id~G~ 299 (393)
T PRK06153 246 RRGIVPHPEYID-------EDNVD-ELDGFTFVFVCVDK--------------GSSRKLIVDYLEAL--GIPFIDVGM 299 (393)
T ss_pred CCeEEEEeecCC-------HHHHH-HhcCCCEEEEcCCC--------------HHHHHHHHHHHHHc--CCCEEEeee
Confidence 235666655442 35554 34799999998652 22223455667663 446777654
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.1 Score=51.70 Aligned_cols=162 Identities=14% Similarity=0.208 Sum_probs=105.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch----hHH-HHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE----LFK-CLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~----~~~-~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
..++.+|+||-|-.|-.|..-|..+|- +++++..+. .+. +..+. |.. ..-+|.+-.-|++..
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGa--r~lVLtSRsGirtGYQa~~vrr----Wr~-~GVqV~vsT~nitt~------ 1833 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGA--RKLVLTSRSGIRTGYQALMVRR----WRR-RGVQVQVSTSNITTA------ 1833 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCc--eEEEEeccccchhhHHHHHHHH----HHh-cCeEEEEecccchhh------
Confidence 457899999999999999999998774 455554322 111 11111 110 122444455667665
Q ss_pred HHHHHHhc------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeeceeccccc
Q 042694 184 DLADVIAK------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 184 ~~~~~l~~------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v~~~~~ 249 (554)
+....|++ -|--|||+|+..+- .++++..-+.-+.||.+|=+..++ |+.++-||..||.++--...
T Consensus 1834 ~ga~~Li~~s~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~ 1913 (2376)
T KOG1202|consen 1834 EGARGLIEESNKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNA 1913 (2376)
T ss_pred hhHHHHHHHhhhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCC
Confidence 55666655 46789999987652 235667777789999999888875 57889999999987733221
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcccee
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
| . .-|...+..-|+++|+-.. .|+|-+.+-=|.|
T Consensus 1914 G---Q-------------------------------------tNYG~aNS~MERiceqRr~-~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1914 G---Q-------------------------------------TNYGLANSAMERICEQRRH-EGFPGTAIQWGAI 1947 (2376)
T ss_pred c---c-------------------------------------cccchhhHHHHHHHHHhhh-cCCCcceeeeecc
Confidence 1 0 0355556677888886544 4888777766555
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=89.51 E-value=7.6 Score=36.46 Aligned_cols=87 Identities=17% Similarity=0.309 Sum_probs=52.6
Q ss_pred chhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHH--HHHH------HcCCc--------hhh-hccC
Q 042694 103 GIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFK--CLKQ------TYGKS--------YQA-FMLS 165 (554)
Q Consensus 103 ~i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~--~l~~------~~~~~--------~~~-~~~~ 165 (554)
..++-.+.++|+|.|+ |-+|+.++..|.+.| |++++++|....+ .+.+ ..+.. ... ...-
T Consensus 14 ~~q~~L~~~~V~IvG~-GglGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~ 90 (200)
T TIGR02354 14 KIVQKLEQATVAICGL-GGLGSNVAINLARAG--IGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYT 90 (200)
T ss_pred HHHHHHhCCcEEEECc-CHHHHHHHHHHHHcC--CCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCC
Confidence 3455577889999998 569999999999875 5677776543100 0000 00000 000 0112
Q ss_pred cEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEc
Q 042694 166 KLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNS 199 (554)
Q Consensus 166 kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~ 199 (554)
++..+..+++ ++....+.+++|+|+-+
T Consensus 91 ~i~~~~~~i~-------~~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 91 EIEAYDEKIT-------EENIDKFFKDADIVCEA 117 (200)
T ss_pred EEEEeeeeCC-------HhHHHHHhcCCCEEEEC
Confidence 4555555554 35667778899999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.32 E-value=2.1 Score=42.99 Aligned_cols=118 Identities=16% Similarity=0.039 Sum_probs=71.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCc--hhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKS--YQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~--~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|.|+|| |.+|+.++..|+.++.. ..++++|.. .+...-..-+. ........+. +.+| .+++.
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~-~el~LiDi~-~~~~~G~a~DL~~~~~~~~~~~~-i~~~----------~~y~~ 66 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLG-SELVLIDIN-EEKAEGVALDLSHAAAPLGSDVK-ITGD----------GDYED 66 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhccccc-ceEEEEEcc-cccccchhcchhhcchhccCceE-EecC----------CChhh
Confidence 47999999 99999999999765432 277777643 00000000000 0000111211 2222 11333
Q ss_pred HhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 189 IAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
+++.|+|+-+||.-+- .+.-.++...|..=.+.+.+...+. ..+.++.|=|.=|
T Consensus 67 -~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvtNPv 121 (313)
T COG0039 67 -LKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVTNPV 121 (313)
T ss_pred -hcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEecCcH
Confidence 3799999999987553 4466788999999999999888874 5567777766433
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.21 E-value=1 Score=47.98 Aligned_cols=77 Identities=12% Similarity=0.142 Sum_probs=48.0
Q ss_pred ccCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEE
Q 042694 108 LKAKNFFVTGA----------------TGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAV 171 (554)
Q Consensus 108 ~~~~~VlITGa----------------TGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~ 171 (554)
++|++||||+| ||-+|..|.+.+...|.+| .++..+.- + + ....+..+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~V---tlI~Gp~~--~----~------~p~~v~~i~ 318 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEV---TLISGPVD--L----A------DPQGVKVIH 318 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcE---EEEeCCcC--C----C------CCCCceEEE
Confidence 68999999976 6889999999999999766 22222210 0 0 112333343
Q ss_pred ccCCCCCCCCCHHHHHHHhc--CccEEEEcCCCCCch
Q 042694 172 GNVCENNLGLEEDLADVIAK--EVDVIVNSAANTTFD 206 (554)
Q Consensus 172 GDl~~~~lGLs~~~~~~l~~--~vdiViH~AA~v~~~ 206 (554)
.+=. ++.++.+.+ ..|++||+||...|.
T Consensus 319 V~ta-------~eM~~av~~~~~~Di~I~aAAVaDyr 348 (475)
T PRK13982 319 VESA-------RQMLAAVEAALPADIAIFAAAVADWR 348 (475)
T ss_pred ecCH-------HHHHHHHHhhCCCCEEEEecccccee
Confidence 3211 133333332 479999999987663
|
|
| >PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.39 Score=37.65 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=27.8
Q ss_pred ccccccccCC-chhHHHHHHHHHhhhhceee
Q 042694 33 RSIMHCQGGG-KTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 33 ~~~~Ff~~GG-~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+.++|+.|+ |||-++.|...|.++||+.+
T Consensus 24 ~d~~l~~~g~lDSl~~veli~~lE~~fgi~i 54 (78)
T PRK05087 24 MDEDLFEEGILDSMGTVELLVELENRFDIEV 54 (78)
T ss_pred CccchhhccCcchHHHHHHHHHHHHHhCCcc
Confidence 4559999997 99999999999999999998
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=88.74 E-value=2.7 Score=49.22 Aligned_cols=107 Identities=11% Similarity=0.161 Sum_probs=66.2
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCchh
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSYQ 160 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~~ 160 (554)
.-....+|||.|+.| ||..+++.|...| |++|.++|... .+++++..+
T Consensus 20 ~kL~~s~VLIiG~gG-LG~EiaKnL~laG--Vg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp---- 92 (1008)
T TIGR01408 20 QKMAKSNVLISGMGG-LGLEIAKNLVLAG--VKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNP---- 92 (1008)
T ss_pred HHHhhCcEEEECCCH-HHHHHHHHHHHcC--CCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCC----
Confidence 345667899999866 9999999999865 67888765321 122222221
Q ss_pred hhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEe
Q 042694 161 AFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVS 240 (554)
Q Consensus 161 ~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vS 240 (554)
.-+|.++.+++. ..++++.|+|+-+.. +++.. ..+-++|++.+...+|++.+
T Consensus 93 ---~V~V~~~~~~l~-----------~e~l~~fdvVV~t~~------~~~~~--------~~in~~cr~~~~~I~fI~~~ 144 (1008)
T TIGR01408 93 ---YVHVSSSSVPFN-----------EEFLDKFQCVVLTEM------SLPLQ--------KEINDFCHSQCPPIAFISAD 144 (1008)
T ss_pred ---CceEEEecccCC-----------HHHHcCCCEEEECCC------CHHHH--------HHHHHHHHHcCCCeEEEEEe
Confidence 224555555442 125678999998632 22232 23558888743235788888
Q ss_pred eceeccc
Q 042694 241 TAYVNGQ 247 (554)
Q Consensus 241 T~~v~~~ 247 (554)
+.+.+|.
T Consensus 145 ~~G~~G~ 151 (1008)
T TIGR01408 145 VRGLFGS 151 (1008)
T ss_pred ecceEEE
Confidence 8776653
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=88.67 E-value=1.6 Score=37.21 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=21.0
Q ss_pred EEEEecccccccHHHHHHHHhhCCCc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDV 137 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V 137 (554)
+|.|+|++|.+|+.+++.|... +++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~ 25 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDF 25 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCc
Confidence 4789999999999999988873 455
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=88.64 E-value=1.9 Score=42.43 Aligned_cols=115 Identities=12% Similarity=0.041 Sum_probs=67.4
Q ss_pred EEEecccccccHHHHHHHHhhCC-CccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 113 FFVTGATGFLAKVLIEKILRTVP-DVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~-~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
|.|.||+|.+|..++..|+..+. .+.+|+++|.. ..+................++. . . .+....
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~--~-----~------~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS--I-----T------DDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE--E-----C------CchHHH
Confidence 57899999999999999987551 33478877642 1222222111100000011111 1 1 222334
Q ss_pred hcCccEEEEcCCCCCch-hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 190 AKEVDVIVNSAANTTFD-ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++++|+|+-+++..+.. .........|+.-.+++.+...+. ..+.++.+=|
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~~i~~t 119 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAWIIVVS 119 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 58999999998875543 344567788999999999888774 3444443334
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK05828 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=88.64 E-value=0.32 Score=38.74 Aligned_cols=28 Identities=4% Similarity=-0.202 Sum_probs=26.8
Q ss_pred ccccccCCchhHHHHHHHHHhhhhceee
Q 042694 35 IMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 35 ~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+|.+||-|||-.+.|...|.++||+.+
T Consensus 30 ~~~~dLg~DSLd~velv~~lE~~f~I~i 57 (84)
T PRK05828 30 KPYRELKIDSLDMFSIIVSLESEFNIEF 57 (84)
T ss_pred CCHHhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 4889999999999999999999999998
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=88.39 E-value=3 Score=44.51 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=50.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc--chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN--AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~--~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
..++|+|.|+ |.+|+.+++.|.+.+.+ +++++ ....+.+++.. ..+..+.||.+++ +.+
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~---v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~------~~L 290 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYS---VKLIERDPERAEELAEEL---------PNTLVLHGDGTDQ------ELL 290 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCe---EEEEECCHHHHHHHHHHC---------CCCeEEECCCCCH------HHH
Confidence 4688999997 99999999999887664 44443 33334444322 2456799999887 665
Q ss_pred HH-HhcCccEEEEcCC
Q 042694 187 DV-IAKEVDVIVNSAA 201 (554)
Q Consensus 187 ~~-l~~~vdiViH~AA 201 (554)
.. -.+++|.|+-+..
T Consensus 291 ~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 291 EEEGIDEADAFIALTN 306 (453)
T ss_pred HhcCCccCCEEEECCC
Confidence 43 3468899885543
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=88.20 E-value=7.6 Score=38.76 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=24.7
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
+|+|.|+ |-||..+++.|.+.| |++|.++|
T Consensus 1 kVLIvGa-GGLGs~vA~~La~aG--Vg~ItlvD 30 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLGWG--VRHITFVD 30 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC--CCeEEEEC
Confidence 5899997 559999999999864 77888775
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.01 E-value=1 Score=45.32 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=22.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDV 137 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V 137 (554)
+.+|.|.||||+.|..|++.|.+ .|.+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~-hp~~ 28 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAG-RSDI 28 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhc-CCCe
Confidence 35899999999999999997776 5666
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=88.00 E-value=6.2 Score=39.35 Aligned_cols=105 Identities=12% Similarity=0.195 Sum_probs=62.5
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-------------------------HHHHHHcCCchhhhccCc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-------------------------KCLKQTYGKSYQAFMLSK 166 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-------------------------~~l~~~~~~~~~~~~~~k 166 (554)
+|||.|+. -+|..+++.|...| |+++.++|.... +++++.. ..-+
T Consensus 1 kVlVVGaG-GlG~eilknLal~G--vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~n-------p~v~ 70 (291)
T cd01488 1 KILVIGAG-GLGCELLKNLALSG--FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRV-------PGVN 70 (291)
T ss_pred CEEEECCC-HHHHHHHHHHHHcC--CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHC-------CCCE
Confidence 58999974 59999999999865 678887753211 1111111 1236
Q ss_pred EEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHc------CCCceEEEEe
Q 042694 167 LVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC------NKLKLFVQVS 240 (554)
Q Consensus 167 v~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~------~~~k~~v~vS 240 (554)
++++.+++.+. + ..+.++.|+|+.+.-. +. .-+.+-+.|.+. ...++|+..+
T Consensus 71 I~~~~~~i~~~-------~-~~f~~~fdvVi~alDn--~~------------aR~~in~~~~~~~~~~~~~~~iPlI~~g 128 (291)
T cd01488 71 VTPHFGKIQDK-------D-EEFYRQFNIIICGLDS--IE------------ARRWINGTLVSLLLYEDPESIIPLIDGG 128 (291)
T ss_pred EEEEecccCch-------h-HHHhcCCCEEEECCCC--HH------------HHHHHHHHHHHhccccccccCccEEEEE
Confidence 77788877643 1 3456899999986433 11 111122222221 2357899999
Q ss_pred eceecccc
Q 042694 241 TAYVNGQR 248 (554)
Q Consensus 241 T~~v~~~~ 248 (554)
|.+-.|..
T Consensus 129 t~G~~G~v 136 (291)
T cd01488 129 TEGFKGHA 136 (291)
T ss_pred EcccEEEE
Confidence 88776653
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=87.78 E-value=7.1 Score=43.03 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=29.2
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
+-.+..+|||.|| |-||..+++.|++. .|++|.++|
T Consensus 334 ekL~~~kVLIvGa-GGLGs~VA~~La~~--GVg~ItlVD 369 (664)
T TIGR01381 334 ERYSQLKVLLLGA-GTLGCNVARCLIGW--GVRHITFVD 369 (664)
T ss_pred HHHhcCeEEEECC-cHHHHHHHHHHHHc--CCCeEEEEc
Confidence 3456789999997 55999999999985 477888765
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria | Back alignment and domain information |
|---|
Probab=87.76 E-value=2.7 Score=40.82 Aligned_cols=76 Identities=26% Similarity=0.346 Sum_probs=47.4
Q ss_pred hCCCccEEEEEc-----chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchh
Q 042694 133 TVPDVGKIFIIN-----AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDE 207 (554)
Q Consensus 133 ~~~~V~~i~~~~-----~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~ 207 (554)
..|.++.|++.. .++|+++|+..+ .|..+.|+..+ +-..+.+.+|++++.-
T Consensus 59 dDp~mKaIVv~q~vpGt~~af~kIkekRp---------DIl~ia~~~~E--------Dp~~i~~~aDi~~~~D------- 114 (275)
T PF12683_consen 59 DDPDMKAIVVSQAVPGTAEAFRKIKEKRP---------DILLIAGEPHE--------DPEVISSAADIVVNPD------- 114 (275)
T ss_dssp G-TTEEEEEEE-SS---HHHHHHHHHH-T---------TSEEEESS--S---------HHHHHHHSSEEEE---------
T ss_pred cCCCccEEEEeCCCcchHHHHHHHHhcCC---------CeEEEcCCCcC--------CHHHHhhccCeEeccc-------
Confidence 356665555443 256888988765 46788888764 4455667799999942
Q ss_pred hHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 208 RYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 208 ~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
+...-..+..+|+++ +.+.|||+|-
T Consensus 115 --------~~~~G~~i~~~Ak~m-GAktFVh~sf 139 (275)
T PF12683_consen 115 --------EISRGYTIVWAAKKM-GAKTFVHYSF 139 (275)
T ss_dssp --------HHHHHHHHHHHHHHT-T-S-EEEEEE
T ss_pred --------hhhccHHHHHHHHHc-CCceEEEEec
Confidence 122345689999998 8999999995
|
They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.67 E-value=4.8 Score=41.36 Aligned_cols=112 Identities=11% Similarity=0.086 Sum_probs=68.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|.|+|+ |.+|+.++..|+..+ -...++++|.. ..+......... .. ...... +.++ .+++.
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~-l~~el~LiDi~~~~~~g~a~DL~~~-~~-~~~~~~-i~~~----------~dy~~ 102 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQD-LADELALVDVNPDKLRGEMLDLQHA-AA-FLPRTK-ILAS----------TDYAV 102 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCCCchhhHHHHHHHhh-hh-cCCCCE-EEeC----------CCHHH
Confidence 69999996 999999999988754 34578887742 111111111000 00 112222 2221 12333
Q ss_pred HhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 189 IAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 189 l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
++++|+||-+|+..+ ..++-.++...|+.-.+++.+..++. ..+.++.+
T Consensus 103 -~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~iviv 152 (350)
T PLN02602 103 -TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLI 152 (350)
T ss_pred -hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence 579999999998743 34456688889999999998888874 44444333
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.33 E-value=1.9 Score=41.34 Aligned_cols=74 Identities=12% Similarity=0.210 Sum_probs=50.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH-
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI- 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l- 189 (554)
|+++|.|+ |=+|..+++.|.+.+++| .++-.+.....+... .......+.||-+++ +.+.++
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~V-v~Id~d~~~~~~~~~---------~~~~~~~v~gd~t~~------~~L~~ag 63 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNV-VLIDRDEERVEEFLA---------DELDTHVVIGDATDE------DVLEEAG 63 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCce-EEEEcCHHHHHHHhh---------hhcceEEEEecCCCH------HHHHhcC
Confidence 46888886 889999999999998876 232223222222111 112467899999988 777776
Q ss_pred hcCccEEEEcCC
Q 042694 190 AKEVDVIVNSAA 201 (554)
Q Consensus 190 ~~~vdiViH~AA 201 (554)
++++|+++=+-+
T Consensus 64 i~~aD~vva~t~ 75 (225)
T COG0569 64 IDDADAVVAATG 75 (225)
T ss_pred CCcCCEEEEeeC
Confidence 578999986544
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=86.93 E-value=5.7 Score=33.24 Aligned_cols=68 Identities=12% Similarity=0.265 Sum_probs=45.1
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|.|. |-+|..+++.|.+.+. .+++++.. ..+.+++ ..+.++.||.+++ +.++.+-
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~---~vvvid~d~~~~~~~~~-----------~~~~~i~gd~~~~------~~l~~a~ 59 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGI---DVVVIDRDPERVEELRE-----------EGVEVIYGDATDP------EVLERAG 59 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTS---EEEEEESSHHHHHHHHH-----------TTSEEEES-TTSH------HHHHHTT
T ss_pred eEEEcC-CHHHHHHHHHHHhCCC---EEEEEECCcHHHHHHHh-----------cccccccccchhh------hHHhhcC
Confidence 578886 6799999999998542 55665532 2333332 2356899999988 7766653
Q ss_pred -cCccEEEEcCC
Q 042694 191 -KEVDVIVNSAA 201 (554)
Q Consensus 191 -~~vdiViH~AA 201 (554)
++++.|+=+..
T Consensus 60 i~~a~~vv~~~~ 71 (116)
T PF02254_consen 60 IEKADAVVILTD 71 (116)
T ss_dssp GGCESEEEEESS
T ss_pred ccccCEEEEccC
Confidence 58888887654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.75 E-value=3.8 Score=41.60 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=66.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+.++|.|.|| |.+|..+...|...+ +..++++|... .+...-.... .......... +.+ . .++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~--~~~l~L~Di~~~~~~g~~lDl~~-~~~~~~~~~~-i~~----~------~d~ 68 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKN--LGDVVLYDVIKGVPQGKALDLKH-FSTLVGSNIN-ILG----T------NNY 68 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCC--CCeEEEEECCCccchhHHHHHhh-hccccCCCeE-EEe----C------CCH
Confidence 4578999997 999999888877654 24677776421 1110000000 0000000111 111 1 344
Q ss_pred HHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCce-EEEEe
Q 042694 187 DVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKL-FVQVS 240 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~-~v~vS 240 (554)
+ .++++|+|+-+|+...- .....++...|..-.+++.+...+. ..+. ++.+|
T Consensus 69 ~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvs 122 (319)
T PTZ00117 69 E-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVT 122 (319)
T ss_pred H-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 5 34899999999976443 3456678888988777888777764 3444 44443
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.60 E-value=2.4 Score=43.48 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=48.7
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc-chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN-AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~-~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.-+|+.|||.||+|-+|+..++-....+ +.+|.... .+.++.+++ .+. + ..-|..++ +.
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~-lGA-------d----~vvdy~~~------~~ 214 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKK-LGA-------D----EVVDYKDE------NV 214 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHH-cCC-------c----EeecCCCH------HH
Confidence 3568899999999999999987776544 33444433 333444443 332 1 12255544 44
Q ss_pred HHHHhc----CccEEEEcCCCCC
Q 042694 186 ADVIAK----EVDVIVNSAANTT 204 (554)
Q Consensus 186 ~~~l~~----~vdiViH~AA~v~ 204 (554)
.+.+.+ ++|+|++|++...
T Consensus 215 ~e~~kk~~~~~~DvVlD~vg~~~ 237 (347)
T KOG1198|consen 215 VELIKKYTGKGVDVVLDCVGGST 237 (347)
T ss_pred HHHHHhhcCCCccEEEECCCCCc
Confidence 444443 6999999998743
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.51 E-value=6.9 Score=37.49 Aligned_cols=114 Identities=18% Similarity=0.298 Sum_probs=62.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---------HHHHHHHcCCchhh-------hccCcEEEEE
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---------FKCLKQTYGKSYQA-------FMLSKLVPAV 171 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---------~~~l~~~~~~~~~~-------~~~~kv~~v~ 171 (554)
++..+|+|.|..| +|+..++.|.|+| +++|.++|..- ...+....++...+ ...+..++-.
T Consensus 28 l~~~~V~VvGiGG-VGSw~veALaRsG--ig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~ 104 (263)
T COG1179 28 LKQAHVCVVGIGG-VGSWAVEALARSG--IGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTA 104 (263)
T ss_pred HhhCcEEEEecCc-hhHHHHHHHHHcC--CCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEee
Confidence 4667899999755 9999999999976 56777654210 00000000100000 0111222222
Q ss_pred ccCCCCCCCCCHHHHHHHhc-CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccc
Q 042694 172 GNVCENNLGLEEDLADVIAK-EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 172 GDl~~~~lGLs~~~~~~l~~-~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~ 247 (554)
-|.. .+++.++.+.. +.|.||.+-- |+..-..|+..|... +. -.+||.++.+.
T Consensus 105 ~~~f-----~t~en~~~~~~~~~DyvIDaiD--------------~v~~Kv~Li~~c~~~-ki---~vIss~Gag~k 158 (263)
T COG1179 105 INDF-----ITEENLEDLLSKGFDYVIDAID--------------SVRAKVALIAYCRRN-KI---PVISSMGAGGK 158 (263)
T ss_pred hHhh-----hCHhHHHHHhcCCCCEEEEchh--------------hhHHHHHHHHHHHHc-CC---CEEeeccccCC
Confidence 2211 12355665554 6999998743 334455789999984 43 45777776554
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.48 E-value=6.1 Score=39.79 Aligned_cols=107 Identities=14% Similarity=0.021 Sum_probs=60.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+++|.|.|| |.+|..++..+...+. . .|+++|... ++++.............. ..+.+... .+++.
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~-~-ev~L~D~~~-~~~~~~~~dl~~~~~~~~---~~~~i~~~------~d~~~- 67 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKEL-G-DVVLFDIVE-GVPQGKALDIAEAAPVEG---FDTKITGT------NDYED- 67 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-e-EEEEEECCC-chhHHHHHHHHhhhhhcC---CCcEEEeC------CCHHH-
Confidence 478999998 9999999998887543 2 677766411 111111100000000000 00111111 23444
Q ss_pred hcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHc
Q 042694 190 AKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQC 230 (554)
Q Consensus 190 ~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~ 230 (554)
++++|+||-+++... ....-.++...|+.-.+.+++...+.
T Consensus 68 ~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~ 109 (307)
T PRK06223 68 IAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY 109 (307)
T ss_pred HCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999987543 23345566778888888888877664
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.22 E-value=3.2 Score=44.24 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=26.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
+++++|+|||++| +|...++.|++.|. +|+..+
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~---~V~~~d 35 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGA---NVTVND 35 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCC---EEEEEc
Confidence 3578999999999 99999999988876 455555
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=86.06 E-value=6.7 Score=39.60 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=68.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHH----HcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQ----TYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~----~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++|.|.|+ |.+|..++..|+..+. +..|++++... ++.+. ..... . .........+ ++
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~-~~ev~l~D~~~-~~~~g~a~dl~~~~--~-~~~~~~i~~~------------d~ 62 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGL-ASEIVLVDINK-AKAEGEAMDLAHGT--P-FVKPVRIYAG------------DY 62 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CCEEEEEECCc-hhhhhHHHHHHccc--c-ccCCeEEeeC------------CH
Confidence 46999997 9999999999988663 34677776431 11111 11000 0 1111221222 23
Q ss_pred HHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 187 DVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
+. ++++|+||-+++... ...+...+...|+.-.+++.+...+. +.+.++.+-|
T Consensus 63 ~~-l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~t 116 (308)
T cd05292 63 AD-CKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVT 116 (308)
T ss_pred HH-hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 33 579999999998743 23456678888999999998888774 3445555544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=1.1 Score=45.83 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=27.6
Q ss_pred CcEEEEecccccccHHHHHHHHh-hCCCccEEEEEcc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILR-TVPDVGKIFIINA 145 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~-~~~~V~~i~~~~~ 145 (554)
+.+|.|.||||++|..|++-|.+ ....+.++..+.+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS 41 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSS 41 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEEC
Confidence 46899999999999999998874 4445555666653
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.58 E-value=1.9 Score=38.28 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=27.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
.++++|+|+|+ |.+|..+++.|.+.+ ..+|++.+.
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g--~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELG--AAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEcC
Confidence 45789999997 899999999998864 335666654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.54 E-value=3.1 Score=43.22 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=25.5
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCc
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDV 137 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V 137 (554)
..++|.|.||+|.+|..+...|.+.|+.|
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V 125 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQV 125 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeE
Confidence 34789999999999999999999988654
|
|
| >CHL00124 acpP acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=85.24 E-value=0.7 Score=36.47 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=27.0
Q ss_pred cccccc-cCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQ-GGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~-~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|.+ +|-|||..+.|...+.++||+.+
T Consensus 28 d~~l~~dlg~DSl~~~eli~~le~~f~i~i 57 (82)
T CHL00124 28 DANFTRDLGADSLDVVELVMAIEEKFDIEI 57 (82)
T ss_pred CcchhhhcCCcHHHHHHHHHHHHHHHCCcc
Confidence 448888 99999999999999999999998
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.20 E-value=5 Score=39.19 Aligned_cols=118 Identities=20% Similarity=0.190 Sum_probs=77.5
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCC-----CCCC-
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENN-----LGLE- 182 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~-----lGLs- 182 (554)
++-+|.|.||.|-||+-|.- ||+.+|.|....+.|-... .-|..|++..+ -|-.
T Consensus 27 ~~~KVAvlGAaGGIGQPLSL-LlK~np~Vs~LaLYDi~~~-------------------~GVaaDlSHI~T~s~V~g~~g 86 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSL-LLKLNPLVSELALYDIANT-------------------PGVAADLSHINTNSSVVGFTG 86 (345)
T ss_pred CcceEEEEecCCccCccHHH-HHhcCcccceeeeeecccC-------------------CcccccccccCCCCceeccCC
Confidence 45689999999999998765 4456788875554442100 01222333221 1111
Q ss_pred HHHHHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccc
Q 042694 183 EDLADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 183 ~~~~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~ 247 (554)
++.++...+++|+|+-=|+.-+- ...-++++.+|..=.++|..++.++ -.+.++.+=|-=||..
T Consensus 87 ~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~-cP~A~i~vIsNPVNst 151 (345)
T KOG1494|consen 87 ADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKC-CPNALILVISNPVNST 151 (345)
T ss_pred hhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhh-CccceeEeecCccccc
Confidence 35677778999999999987553 3456789999999999999888774 3455666666555443
|
|
| >PRK09184 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=0.78 Score=36.93 Aligned_cols=28 Identities=7% Similarity=-0.096 Sum_probs=25.9
Q ss_pred ccccc--cCCchhHHHHHHHHHhhhhceee
Q 042694 35 IMHCQ--GGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 35 ~~Ff~--~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
..||. +|-|||-++.|+..+.++||+.+
T Consensus 33 ~~l~~~dLglDSld~velv~~lE~~fgi~i 62 (89)
T PRK09184 33 APLYGEGLGLDSIDILEIALVISKRYGFQL 62 (89)
T ss_pred cccccccCCCcHHHHHHHHHHHHHHHCCcC
Confidence 37766 99999999999999999999998
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.60 E-value=1.1 Score=45.69 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=28.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
+..+|.|.||||++|..|++.|.++.+.+.++..+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS 39 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS 39 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc
Confidence 3568999999999999999988875444457776643
|
|
| >TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2 | Back alignment and domain information |
|---|
Probab=84.38 E-value=0.69 Score=35.61 Aligned_cols=31 Identities=3% Similarity=0.020 Sum_probs=28.5
Q ss_pred cccccccccCC-chhHHHHHHHHHhhhhceee
Q 042694 32 KRSIMHCQGGG-KTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 32 ~~~~~Ff~~GG-~Sl~a~~l~~~l~~~~~v~~ 62 (554)
..+.++|+.|- ||+.+++|...|.++||+.+
T Consensus 20 ~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~i 51 (73)
T TIGR01688 20 NPDLELFEEGLLDSFGTVQLLLEIQNQFDIDV 51 (73)
T ss_pred CccHHHHHccchhHHHHHHHHHHHHHHhCCcc
Confidence 44559999998 99999999999999999999
|
This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=84.38 E-value=1.9 Score=44.40 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=26.0
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEcc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINA 145 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~ 145 (554)
.+|.|.||||++|..|++.||+. ...+.+++.+.+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss 37 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFST 37 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecc
Confidence 57999999999999999977763 223445666544
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=84.23 E-value=3 Score=37.96 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=42.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++++|+|.|+.+.+|..+++.|.+.+. +|++.++. .+++.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~---~V~v~~r~------------------------------------~~~l~ 82 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA---TVTVCHSK------------------------------------TKNLK 82 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC---EEEEEECC------------------------------------chhHH
Confidence 5789999999977889999999988653 34444321 03455
Q ss_pred HHhcCccEEEEcCCCCC
Q 042694 188 VIAKEVDVIVNSAANTT 204 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~ 204 (554)
....++|+||-+.+..+
T Consensus 83 ~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 83 EHTKQADIVIVAVGKPG 99 (168)
T ss_pred HHHhhCCEEEEcCCCCc
Confidence 66789999999888754
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.08 E-value=4.7 Score=35.12 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=57.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++|++.| +| -|..+++.|.+.|. .|..+|... .+..++ ..+.++.+|+.++++
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~-----------~~~~~v~dDlf~p~~------- 72 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESGF---DVIVIDINEKAVEKAKK-----------LGLNAFVDDLFNPNL------- 72 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCCC---EEEEEECCHHHHHHHHH-----------hCCeEEECcCCCCCH-------
Confidence 457899998 57 78889999988775 566666432 222221 246789999999954
Q ss_pred HHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCc
Q 042694 187 DVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLK 234 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k 234 (554)
.+-+++|.|+-+=- +.++ ...++++|++. +..
T Consensus 73 -~~y~~a~liysirp-------p~el-------~~~~~~la~~~-~~~ 104 (134)
T PRK04148 73 -EIYKNAKLIYSIRP-------PRDL-------QPFILELAKKI-NVP 104 (134)
T ss_pred -HHHhcCCEEEEeCC-------CHHH-------HHHHHHHHHHc-CCC
Confidence 24468899997622 2222 23588999985 444
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.84 E-value=4 Score=39.65 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=26.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
+++|.|.||+|=+|+.|++.+.+. +++.-+-.+++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~ 36 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDR 36 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEec
Confidence 568999999999999999999874 56533334443
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=83.70 E-value=3.7 Score=41.85 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=44.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.|.+|||+||||-+|...+.-+...|.. .|....+ ...+.++ ..+. +.+. |..+.+ + .+...
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~--~v~~~~s~~k~~~~~-~lGA-------d~vi----~y~~~~--~-~~~v~ 204 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGAT--VVAVVSSSEKLELLK-ELGA-------DHVI----NYREED--F-VEQVR 204 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCc--EEEEecCHHHHHHHH-hcCC-------CEEE----cCCccc--H-HHHHH
Confidence 3789999999999999998877766542 3444333 2233333 2221 1111 122221 1 24444
Q ss_pred HHhc--CccEEEEcCCC
Q 042694 188 VIAK--EVDVIVNSAAN 202 (554)
Q Consensus 188 ~l~~--~vdiViH~AA~ 202 (554)
++.. ++|+|+.+-+.
T Consensus 205 ~~t~g~gvDvv~D~vG~ 221 (326)
T COG0604 205 ELTGGKGVDVVLDTVGG 221 (326)
T ss_pred HHcCCCCceEEEECCCH
Confidence 4543 69999998765
|
|
| >PRK00982 acpP acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=83.42 E-value=0.97 Score=35.21 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=27.4
Q ss_pred ccccc-cccCCchhHHHHHHHHHhhhhceee
Q 042694 33 RSIMH-CQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 33 ~~~~F-f~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+.+| -++|-|||..+.+...++++||+.+
T Consensus 25 ~d~~l~~dlglDSl~~~~li~~le~~f~i~i 55 (78)
T PRK00982 25 PEASFVDDLGADSLDTVELVMALEEEFGIEI 55 (78)
T ss_pred CCcchHhhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 34488 7999999999999999999999998
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=83.32 E-value=1.3 Score=45.34 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=24.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
++|.|+||||++|++|++.|.+ .+.+.-+.+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~-~~~~~l~~v~~ 33 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAK-HPYFELAKVVA 33 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHh-CCCceEEEEEE
Confidence 3799999999999999997776 45553333333
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=83.12 E-value=1.7 Score=41.40 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=24.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDV 137 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V 137 (554)
|+|.|.||+|.+|+.+...|.+.+++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V 27 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKI 27 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEE
Confidence 479999999999999999999988655
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.99 E-value=2.3 Score=42.26 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=25.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVP 135 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~ 135 (554)
.+|++|+|.|++|.+|+.+...|++.+.
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga 184 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA 184 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC
Confidence 5789999999999999999999998664
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=82.97 E-value=3.1 Score=42.72 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=28.4
Q ss_pred cEEEEecccccccHHHHHHHH-hhCCCccEEEEEcc
Q 042694 111 KNFFVTGATGFLAKVLIEKIL-RTVPDVGKIFIINA 145 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL-~~~~~V~~i~~~~~ 145 (554)
++|.|.||||-+|+.+++.|. ++...+.+++.+.+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss 36 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFST 36 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEc
Confidence 478999999999999999998 55556667777754
|
|
| >PRK07117 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=82.97 E-value=1.1 Score=35.28 Aligned_cols=29 Identities=7% Similarity=-0.051 Sum_probs=26.9
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|-+||-|||-.+.+...+.++||+.+
T Consensus 29 ~~~l~DLg~DSlD~veiv~~led~f~i~I 57 (79)
T PRK07117 29 EDSLVDLGANSMDRAEIVIMTLESLSLKI 57 (79)
T ss_pred CCChhhcCCChHHHHHHHHHHHHHHCCcc
Confidence 33888999999999999999999999998
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=14 Score=37.62 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=65.1
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--H--HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--F--KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~--~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+.++|.|.|| |.+|..+...++..+. ..|+++|... . +.+...... ........+.. . .
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl--~~i~LvDi~~~~~~~~~ld~~~~~---~~~~~~~~I~~-~----------~ 67 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNL--GDVVLFDIVKNIPQGKALDISHSN---VIAGSNSKVIG-T----------N 67 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEeCCCchhhHHHHHHHhhh---hccCCCeEEEE-C----------C
Confidence 4578999995 9999999988876543 3577776311 0 111111100 00111111111 0 2
Q ss_pred HHHHHhcCccEEEEcCCCCCc-hh-----hHHHHHHHhchHHHHHHHHHHHcCCCc-eEEEEe
Q 042694 185 LADVIAKEVDVIVNSAANTTF-DE-----RYDIAIDINTRGPCRLMEFAKQCNKLK-LFVQVS 240 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~-~~-----~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~v~vS 240 (554)
+++. ++++|+||.+|+..+- .. +..++...|+.-.+++.+...+. ..+ .++.+|
T Consensus 68 d~~~-l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~-~p~a~~iv~s 128 (321)
T PTZ00082 68 NYED-IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY-CPNAFVIVIT 128 (321)
T ss_pred CHHH-hCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 2333 4799999999976431 22 55677888988888888887775 344 344444
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.40 E-value=3.6 Score=40.84 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=43.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++|++|+|.|+++.+|+-+...|++.+..| ++..+. . .++.
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatV---tv~~s~------------------------------t------~~l~ 196 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASV---TILHSR------------------------------S------KDMA 196 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeE---EEEeCC------------------------------c------hhHH
Confidence 579999999999999999999999876433 322211 1 3455
Q ss_pred HHhcCccEEEEcCCCCCc
Q 042694 188 VIAKEVDVIVNSAANTTF 205 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~ 205 (554)
...+++|+||-+.+.-++
T Consensus 197 ~~~~~ADIVIsAvg~p~~ 214 (286)
T PRK14175 197 SYLKDADVIVSAVGKPGL 214 (286)
T ss_pred HHHhhCCEEEECCCCCcc
Confidence 667899999998887554
|
|
| >PRK07639 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=82.09 E-value=1.3 Score=35.48 Aligned_cols=29 Identities=0% Similarity=-0.236 Sum_probs=26.4
Q ss_pred cccccc-cCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQ-GGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~-~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|++ +|-||+-++.|...|.++||+.+
T Consensus 29 d~~l~edL~lDSld~velv~~lE~~fgi~i 58 (86)
T PRK07639 29 TMRLNEDLYIDSVMMLQLIVYIEMDVKLCV 58 (86)
T ss_pred CCCcccccCCChHHHHHHHHHHHHHHCCcc
Confidence 337776 99999999999999999999999
|
|
| >COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=81.53 E-value=1.2 Score=35.07 Aligned_cols=27 Identities=15% Similarity=0.003 Sum_probs=25.0
Q ss_pred ccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.|. ++|-|||-++.|...|.++||+.+
T Consensus 30 ~~~~dlg~DSld~veLi~~lE~~f~i~i 57 (80)
T COG0236 30 SFVEDLGLDSLDLVELVMALEEEFGIEI 57 (80)
T ss_pred ccccccCccHHHHHHHHHHHHHHHCCcC
Confidence 565 499999999999999999999998
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=81.36 E-value=15 Score=36.97 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=61.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
++|-|.|+ |++|..++..|+..+.. .|+++|.. ....-+ ..+. ........ ..+.+.-. .+++.
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~--~VvlvDi~~~l~~g~-a~d~-~~~~~~~~---~~~~i~~t------~d~~~- 66 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA--DLVLLDVVEGIPQGK-ALDM-YEASPVGG---FDTKVTGT------NNYAD- 66 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC--eEEEEeCCCChhHHH-HHhh-hhhhhccC---CCcEEEec------CCHHH-
Confidence 47899996 99999999999876542 47776641 111100 0000 00000000 01111110 23444
Q ss_pred hcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHc
Q 042694 190 AKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQC 230 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~ 230 (554)
++++|+||-+|+...- .++..++...|+.-.+++++...+.
T Consensus 67 ~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~ 108 (305)
T TIGR01763 67 TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH 108 (305)
T ss_pred hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999997543 3455578889999999998877664
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=81.29 E-value=2.9 Score=41.47 Aligned_cols=36 Identities=36% Similarity=0.480 Sum_probs=29.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE 146 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~ 146 (554)
.++++|+|+|+ |-+|+.++..|...+ +.+|+++++.
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g--~~~V~v~~R~ 156 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLG--VAEITIVNRT 156 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcC--CCEEEEEeCC
Confidence 46789999997 899999999999765 3477777653
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=81.27 E-value=12 Score=36.47 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=59.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||.|||+ =|+.|++.|.+.+. | ++.+..+.-..+... ....+.++.|-+.+. +.+..++
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~-v--~~sv~t~~g~~~~~~--------~~~~~~v~~G~lg~~------~~l~~~l 62 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY-V--IVSVATSYGGELLKP--------ELPGLEVRVGRLGDE------EGLAEFL 62 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC-E--EEEEEhhhhHhhhcc--------ccCCceEEECCCCCH------HHHHHHH
Confidence 6899999999 59999999998775 3 222222211122111 123456678877554 6666666
Q ss_pred c--CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCce
Q 042694 191 K--EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKL 235 (554)
Q Consensus 191 ~--~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~ 235 (554)
+ +++.||... .||.. .-++++.++|+++ ++.-
T Consensus 63 ~~~~i~~vIDAT------HPfA~------~is~na~~a~~~~-~ipy 96 (249)
T PF02571_consen 63 RENGIDAVIDAT------HPFAA------EISQNAIEACREL-GIPY 96 (249)
T ss_pred HhCCCcEEEECC------CchHH------HHHHHHHHHHhhc-Ccce
Confidence 4 899999963 23333 2367888999885 6543
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=80.85 E-value=9.2 Score=39.56 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=28.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCC-CccEEEEEc-chhHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVP-DVGKIFIIN-AELFKCLKQT 154 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~-~V~~i~~~~-~~~~~~l~~~ 154 (554)
+|+|.|.|+||.||+.-++-+.+ .+ .. +|..+. ....+++.+.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~-~p~~f-~VvaLaa~~n~~~l~~q 45 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRR-NPDRF-RVVALSAGKNVELLAEQ 45 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHh-Ccccc-EEEEEEcCCCHHHHHHH
Confidence 47899999999999998877765 34 34 555443 3334444443
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=80.60 E-value=4.8 Score=36.31 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=40.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||+|+|.|.++.+|+-|...|++++..| .... -.. .+++
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atV---t~~h-----------------------------~~T-------~~l~ 74 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATV---TICH-----------------------------SKT-------KNLQ 74 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EE---EEE------------------------------TTS-------SSHH
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeE---Eecc-----------------------------CCC-------Cccc
Confidence 579999999999999999999999876433 2211 111 3456
Q ss_pred HHhcCccEEEEcCCCCCc
Q 042694 188 VIAKEVDVIVNSAANTTF 205 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~ 205 (554)
+..++.|+||-+++..++
T Consensus 75 ~~~~~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 75 EITRRADIVVSAVGKPNL 92 (160)
T ss_dssp HHHTTSSEEEE-SSSTT-
T ss_pred ceeeeccEEeeeeccccc
Confidence 677899999999988666
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=80.50 E-value=14 Score=39.01 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=64.4
Q ss_pred EEEEecccccccHHHHHHHHhhCCCc---cEEEEEcchhH-------------------------HHHHHHcCCchhhhc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDV---GKIFIINAELF-------------------------KCLKQTYGKSYQAFM 163 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V---~~i~~~~~~~~-------------------------~~l~~~~~~~~~~~~ 163 (554)
+|||.|+ |-+|..+++.|...|-.. ++|.++|.... +++++.. .
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lN-------p 72 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMN-------P 72 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHC-------C
Confidence 4899997 559999999998865310 67887653211 1111111 1
Q ss_pred cCcEEEEEccCCCCCCCCCHHHH-HHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeec
Q 042694 164 LSKLVPAVGNVCENNLGLEEDLA-DVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTA 242 (554)
Q Consensus 164 ~~kv~~v~GDl~~~~lGLs~~~~-~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~ 242 (554)
.-+++.+...+.... ++.+ ....++.|+|+.+.-. +..-..+-+.|... -++++...|.
T Consensus 73 ~v~I~a~~~~v~~~~----~~~~~~~f~~~~DvVi~alDn--------------~~aR~~vn~~C~~~--~iPli~~gt~ 132 (435)
T cd01490 73 DLKITALQNRVGPET----EHIFNDEFWEKLDGVANALDN--------------VDARMYVDRRCVYY--RKPLLESGTL 132 (435)
T ss_pred CCEEEEEecccChhh----hhhhhHHHhcCCCEEEECCCC--------------HHHHHHHHHHHHHh--CCCEEEEecc
Confidence 235666666654321 1111 3455789999987433 22233466677763 4689999888
Q ss_pred eecccc
Q 042694 243 YVNGQR 248 (554)
Q Consensus 243 ~v~~~~ 248 (554)
+..|..
T Consensus 133 G~~G~v 138 (435)
T cd01490 133 GTKGNT 138 (435)
T ss_pred cceeEE
Confidence 777764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=80.29 E-value=11 Score=36.46 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=27.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhC-CCccEEEEEcc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTV-PDVGKIFIINA 145 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~~ 145 (554)
+++|.|.| +|.+|..++..|++.+ ..+..+++.++
T Consensus 4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 4 KHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 46899998 5999999999999865 34555776654
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.17 E-value=44 Score=30.00 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=57.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
.+|+|-||-|-||+..++.+..+++-|..|-+..++ ..+--+.|.+|-+-. |.-+.+.
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe----------------~Ad~sI~V~~~~swt------EQe~~v~ 61 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENE----------------QADSSILVDGNKSWT------EQEQSVL 61 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccc----------------cccceEEecCCcchh------HHHHHHH
Confidence 479999999999999999999888766554443322 112223455654432 2222211
Q ss_pred ---------cCccEEEEcCCCC--------CchhhHHHHHHHhchHHHHHHHHHHH
Q 042694 191 ---------KEVDVIVNSAANT--------TFDERYDIAIDINTRGPCRLMEFAKQ 229 (554)
Q Consensus 191 ---------~~vdiViH~AA~v--------~~~~~~~~~~~~Nv~gt~~ll~la~~ 229 (554)
+++|.||-.|+-- .+..+.+.+++-.|....--.++|.+
T Consensus 62 ~~vg~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~ 117 (236)
T KOG4022|consen 62 EQVGSSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATT 117 (236)
T ss_pred HHHHHhhcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHh
Confidence 3799999987631 12334445555555554444555554
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=80.02 E-value=3.2 Score=35.83 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=25.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEE
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFI 142 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~ 142 (554)
..+|-|.|+ |=+|.+|.+.|.+.++.|..||.
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGHEVVGVYS 41 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTSEEEEESS
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEe
Confidence 468999997 99999999999998876644444
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 554 | ||||
| 4dqv_A | 478 | Crystal Structure Of Reductase (R) Domain Of Non-Ri | 4e-06 |
| >pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal Peptide Synthetase From Mycobacterium Tuberculosis Length = 478 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 554 | |||
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 3e-30 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 2e-07 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 6e-04 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 8e-04 |
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-30
Identities = 62/332 (18%), Positives = 112/332 (33%), Gaps = 48/332 (14%)
Query: 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN------------AELFKCLKQTYG 156
+ + +TGATGFL + L+ ++LR + G++ + + F
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELL 131
Query: 157 KSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDIN 216
+ ++ +L G+ E +LGL++ + +A+ VD+IV+SAA Y N
Sbjct: 132 RHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFP-YHELFGPN 190
Query: 217 TRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLI 276
G L+ A KLK F VSTA V + ++ R +
Sbjct: 191 VAGTAELIRIALTT-KLKPFTYVSTADVGAAIEPSAFTED-------------ADIRVIS 236
Query: 277 PTLDVENEMKLA-LESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGW 335
PT V+ SK + + + +PV + R +I ++G
Sbjct: 237 PTRTVDGGWAGGYGTSK------WAGEVLLREANDLCALPVAVFRCGMI--LADTSYAGQ 288
Query: 336 MEGN------RMMDPII----LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHG 385
N RM+ ++ + D +P V A A+
Sbjct: 289 --LNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVA 346
Query: 386 MIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417
Y + + + + + L E
Sbjct: 347 GSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA 378
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 1e-11
Identities = 82/475 (17%), Positives = 155/475 (32%), Gaps = 126/475 (26%)
Query: 93 TSLVELQDGIGIVKFLKAKNFFVTGATGF----LA-KVLI-EKILRTVPDVGKIFIINAE 146
+L+EL+ ++ + G G +A V + K+ + KIF +N
Sbjct: 142 QALLELRPAKNVL---------IDGVLGSGKTWVALDVCLSYKVQCKMD--FKIFWLN-- 188
Query: 147 LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFD 206
LK ML KL+ + + N D + I + I
Sbjct: 189 ----LKNCNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 207 ERYDIAIDI--NTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264
+ Y+ + + N + F C L ++T R K +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKIL-----LTT-------RFK----------QVT 278
Query: 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIP--VVIIRP- 321
+F+S + +LD + L E + K L D+P V+ P
Sbjct: 279 --DFLSAATTTHISLD---HHSMTLTPDE--VKSLLL---KYLDCRPQDLPREVLTTNPR 328
Query: 322 --SVIESTCKEPFSGW-----MEGNRM----------MDPIIL--YYGKGQLTGFLVD-- 360
S+I + ++ + W + +++ ++P + +L+ F
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFPPSAH 386
Query: 361 -PNGILDVVPADM---VVNATLAAIAQHGMIQK-PDINVYQIASSVVNPLVFQDLARL-- 413
P +L ++ D+ V + + ++ +++K P + I P ++ +L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI------PSIYLELKVKLE 440
Query: 414 ----LH----EHYSASPCVDTKGRPIRVPSMKLFSSMEDFSA-HLWR-DAIQRSGLTSTA 463
LH +HY+ D+ +S HL + +R L
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS----HIGHHLKNIEHPERMTLFRMV 496
Query: 464 NLNGK-LPQKLE---TICRKSVEQAKHLADI--YEPYTFYGGRFDNSNT-ERLME 511
L+ + L QK+ T S L + Y+PY DN ERL+
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-----CDNDPKYERLVN 546
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 1e-09
Identities = 76/508 (14%), Positives = 134/508 (26%), Gaps = 147/508 (28%)
Query: 107 FLKA--KNFFVTGATGFLAKVL----IEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQ 160
F A NF +L I+ I+ + V LF L + Q
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR----LFWTLLSKQEEMVQ 80
Query: 161 AFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGP 220
F+ L N L I E R P
Sbjct: 81 KFVEEVL--------RINYKF---LMSPIKTE------------------------QRQP 105
Query: 221 CRLME-FAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTL 279
+ + +Q ++L QV Y N R ++ ++ L P
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLK---------LRQAL----LELRPAK 151
Query: 280 DVENE-MK------LALESKEFSTDGEVAQKMKG----LGLERGDIPVVIIRPSVIESTC 328
+V + + +AL+ +V KM L L+ + P ++ ++
Sbjct: 152 NVLIDGVLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEM--LQKLL 206
Query: 329 KEPFSGWMEGNRMMDPIILYY--GKGQLTGFLVD---PNG--ILDVVPADMVVNA----- 376
+ W + I L + +L L N +L V NA
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 377 -TLAAIAQHGMIQKPDINVYQIASSVVNPLVFQD------LARLLHEHYSASPCVDTKGR 429
L + S + + L + L P
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 430 PIRVPSMKLFS-SMEDFSAHL--WRDAIQRSGLTSTANLNGKLPQKLETICRKSVEQAKH 486
P R+ + + S+ D A W+ ++N KL TI S+
Sbjct: 327 PRRL---SIIAESIRDGLATWDNWK------------HVNCD---KLTTIIESSLNV--- 365
Query: 487 LADIYEPYTFYGGRF-------DNSN-TERLME----KMSEEEKRKF--GFDVGSI---D 529
L EP + F +++ L+ + + + S+
Sbjct: 366 L----EPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 530 WKEYITNVHIPGL----RRHVMKGRGIH 553
KE + IP + + + +H
Sbjct: 421 PKEST--ISIPSIYLELKVKLENEYALH 446
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 71/448 (15%), Positives = 131/448 (29%), Gaps = 149/448 (33%)
Query: 7 NSL----SVAPNKFVKAFENNCDLCLLRRKRSIMHCQGGGKTTRSSGVSSALKERSTVTD 62
N L +V K AF +C + L R + + TT S T+T
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD----HHSMTLTP 300
Query: 63 TAAGSLVLSPNGKGHAEIVVQDL-------VPFGGQATSLV--ELQDGIGIVKFLKAKNF 113
SL+L + + QDL P S++ ++DG+ K
Sbjct: 301 DEVKSLLLK-----YLDCRPQDLPREVLTTNPR---RLSIIAESIRDGLATWDNWK---- 348
Query: 114 FVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQT-YGKSYQA---FMLSKLVP 169
V +K+ + + + L+ Y K + F S +P
Sbjct: 349 ----------HVNCDKLTTII----ESSL------NVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 170 AVGNVCENNLGLEEDL-ADVIAKEVDVIVN-----SAANTTFDER----YDIAIDINTRG 219
L L + DVI +V V+VN S E I +++
Sbjct: 389 ------TILLSL---IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK--- 436
Query: 220 PCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTL 279
K N+ L + Y N + F D + P L
Sbjct: 437 -------VKLENEYALHRSIVDHY-NIPKT-------FDSDD------------LIPPYL 469
Query: 280 D-------------VENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326
D +E+ ++ L F + QK++ ++
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL-------- 521
Query: 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHG- 385
N + + +Y ++ D + + +VNA L + +
Sbjct: 522 ------------NTLQQ--LKFYKP-----YICDNDPKY-----ERLVNAILDFLPKIEE 557
Query: 386 -MIQKPDINVYQIASSVVNPLVFQDLAR 412
+I ++ +IA + +F++ +
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 51/351 (14%), Positives = 94/351 (26%), Gaps = 93/351 (26%)
Query: 114 FVTGATGFLAKVLIEKIL----------RTVPDVGKIFIINAELFKCLKQTYGKSYQAFM 163
V GATG L I R + ++ + E
Sbjct: 17 AVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRV-------------- 62
Query: 164 LSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDER-YDIAIDINTRGPCR 222
+ + L + +D ++ SA R + +
Sbjct: 63 --------AEMLD-----HAGLERALR-GLDGVIFSAGYYPSRPRRWQEEVASALGQTNP 108
Query: 223 LMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVE 282
Q ++ + V +AY + E +S
Sbjct: 109 FYAACLQA-RVPRILYVGSAYAMPRHPQ----------GLPGHEGLFYDSLP--SGKSSY 155
Query: 283 NEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMM 342
K AL+ E A++ GL PVVI P ++ G ++
Sbjct: 156 VLCKWALD--------EQAREQARNGL-----PVVIGIPGMV--------LGELDIGPTT 194
Query: 343 DPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVV 402
+I G G++T + G +V+ A L A + G I + Y + +
Sbjct: 195 GRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMA-LERGRIGE----RY-LLTG-- 243
Query: 403 NPLVFQDLARLLHEHYSASPCVDTKGRPIRVPS--MKLFSSMEDFSAHLWR 451
+ L DL R + E P + + +++ +
Sbjct: 244 HNLEMADLTRRIAELLGQPA-------PQPMSMAMARALATLGRLRYRVSG 287
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 182 EEDLADVIAKE-VDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLK-LF 236
+ +I VIV+ AA D + D A +N L AK+ +
Sbjct: 49 SNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNL---AKEAAAVGAFL 105
Query: 237 VQVSTAYV 244
+ +S+ YV
Sbjct: 106 IYISSDYV 113
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* Length = 299 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 179 LGLEEDLAD-------VIAKEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAK 228
D ++ V DVIVN+AA+T D ++A +N + AK
Sbjct: 34 KEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAI---AK 90
Query: 229 QCNKLK-LFVQVSTAYV 244
N+ V ST YV
Sbjct: 91 AANETGAWVVHYSTDYV 107
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 554 | |||
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.97 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.97 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.97 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.96 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.96 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.96 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.96 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.95 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.95 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.95 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.95 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.95 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.95 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.95 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.95 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.95 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.95 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.95 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.95 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.94 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.94 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.94 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.94 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.94 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.94 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.94 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.94 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.94 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.94 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.94 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.93 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.93 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.93 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.93 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.93 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.93 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.93 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.93 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.93 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.93 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.93 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.93 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.93 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.93 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.92 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.92 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.92 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.92 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.92 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.92 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.92 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.92 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.92 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.92 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.92 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.92 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.92 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.92 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.92 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.91 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.91 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.91 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.91 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.9 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.9 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.9 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.89 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.89 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.89 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.88 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.87 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.87 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.87 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.87 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.87 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.86 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.86 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.85 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.84 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.84 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.82 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.81 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.8 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.8 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.8 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.78 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.77 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.75 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.74 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.73 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.73 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.73 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.71 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.7 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.7 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.69 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.69 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.68 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.68 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.68 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.67 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.67 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.67 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.66 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.66 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.66 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.66 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.66 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.66 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.65 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.65 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.65 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.65 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.65 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.64 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.64 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.64 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.64 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.64 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.64 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.64 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.63 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.63 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.63 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.63 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.63 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.63 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.63 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.62 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.62 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.62 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.62 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.62 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.62 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.62 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.62 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.61 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.61 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.61 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.61 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.61 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.61 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.61 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.61 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.61 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.6 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.6 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.6 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.6 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.6 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.6 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.6 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.6 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.6 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.6 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.6 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.59 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.59 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.59 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.59 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.59 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.59 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.59 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.59 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.59 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.59 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.59 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.58 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.58 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.58 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.58 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.58 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.58 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.58 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.58 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.57 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.57 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.57 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.57 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.57 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.57 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.57 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.57 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.57 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.57 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.57 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.56 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.56 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.56 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.56 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.56 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.56 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.56 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.56 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.55 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.55 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.55 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.55 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.55 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.55 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.55 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.54 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.54 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.54 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.54 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.54 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.54 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.54 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.53 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.53 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.53 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.53 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.53 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.53 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.52 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.52 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.52 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.52 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.52 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.52 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.52 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.52 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.52 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.52 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.52 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.52 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.51 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.51 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.51 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.51 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.51 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.5 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.5 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.5 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.5 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.5 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.49 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.49 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.49 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.49 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.49 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.49 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.49 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.49 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.49 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.49 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.48 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.48 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.48 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.48 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.48 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.48 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.47 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.47 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.47 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.47 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.47 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.46 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.46 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.46 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.46 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.45 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.45 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.45 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.45 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.44 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.43 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.43 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.42 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.42 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.42 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.41 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.4 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.4 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.39 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.39 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.38 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.38 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.38 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.35 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.34 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.34 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.33 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.32 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.3 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.29 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.25 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.24 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.23 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.21 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.2 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.19 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.18 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.16 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.14 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.11 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.11 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.08 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.06 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.0 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 98.85 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 98.76 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 98.74 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 98.74 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 98.73 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 98.72 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 98.65 | |
| 2cq8_A | 110 | 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH | 98.55 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 98.53 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.51 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.48 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.43 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.4 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 98.38 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 98.34 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.33 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 98.31 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 98.29 | |
| 1dny_A | 91 | Non-ribosomal peptide synthetase peptidyl carrier | 98.27 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 98.25 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.05 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.95 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 97.89 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.58 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.55 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.54 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 97.54 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.51 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 97.37 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 97.33 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 97.32 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.3 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.28 | |
| 2afd_A | 88 | Protein ASL1650; twisted antiparallel helical bund | 97.26 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.24 | |
| 2ju1_A | 95 | Erythronolide synthase; carrier protein domain, mo | 97.15 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 97.1 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.02 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.91 | |
| 2kr5_A | 89 | PKS, aflatoxin biosynthesis polyketide synthase; a | 96.75 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 96.7 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 96.69 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.56 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 96.54 | |
| 2liu_A | 99 | CURA; holo state, transferase; NMR {Lyngbya majusc | 96.3 | |
| 1l0i_A | 78 | Acyl carrier protein; acyl chain binding, fatty ac | 96.19 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 96.16 | |
| 2ava_A | 82 | ACP I, acyl carrier protein I, chloroplast; four-h | 96.11 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.07 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.06 | |
| 2ehs_A | 77 | ACP, acyl carrier protein; lipid transport, struct | 96.03 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.03 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 95.98 | |
| 2cnr_A | 82 | FAS, ACP, acyl carrier protein; polykdetide, phosp | 95.93 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 95.82 | |
| 1or5_A | 83 | Acyl carrier protein; ACP, biosynthesis, frenolici | 95.81 | |
| 2lol_A | 81 | ACP, acyl carrier protein; lipid transport; NMR {R | 95.76 | |
| 1x3o_A | 80 | Acyl carrier protein; structural genomics, riken s | 95.7 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.65 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.59 | |
| 1nq4_A | 95 | Oxytetracycline polyketide synthase acyl carrier p | 95.42 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 95.41 | |
| 2kjs_A | 87 | Putative acyl carrier protein; alpha, ACP, PNS, st | 95.39 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 95.38 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 95.34 | |
| 2jq4_A | 105 | AGR_C_4658P, hypothetical protein ATU2571; ATC2521 | 95.3 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.07 | |
| 1f80_D | 81 | Acyl carrier protein; transferase; HET: PN2; 2.30A | 95.07 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 95.02 | |
| 1af8_A | 86 | Actinorhodin polyketide synthase acyl carrier Pro; | 94.91 | |
| 2cg5_B | 91 | Fatty acid synthase; transferase-hydrolase complex | 94.91 | |
| 2dnw_A | 99 | Acyl carrier protein; ACP, fatty acid biosynthesis | 94.91 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 94.75 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 94.64 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 94.62 | |
| 3gzm_A | 81 | Acyl carrier protein; helix bundle, phosphopanteth | 94.62 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 94.49 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 94.47 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 94.44 | |
| 2qnw_A | 82 | Acyl carrier protein; malaria, SGC, structural gen | 94.3 | |
| 1klp_A | 115 | ACP, ACPM, meromycolate extension acyl carrier pro | 94.28 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.23 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.14 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 94.1 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.03 | |
| 2l3v_A | 79 | ACP, acyl carrier protein; structural genomi seatt | 93.96 | |
| 3ejb_A | 97 | Acyl carrier protein; protein-protein complex, cyt | 93.88 | |
| 2amw_A | 83 | Hypothetical protein NE2163; all helical protein, | 93.83 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 93.47 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.37 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 93.28 | |
| 2kwl_A | 84 | ACP, acyl carrier protein; structural genomics, se | 93.28 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.28 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 93.14 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.13 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.1 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 92.95 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 92.86 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 92.71 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 92.6 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 92.57 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 92.56 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 92.44 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 92.12 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 92.0 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 91.99 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.87 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 91.81 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 91.75 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 91.73 | |
| 2lte_A | 103 | Specialized acyl carrier protein; APO protein, tra | 90.98 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 91.69 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.63 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 91.57 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.57 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 91.49 | |
| 1dv5_A | 80 | APO-DCP, APO-D-alanyl carrier protein; 3-helix bun | 91.43 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 91.34 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 91.32 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 91.25 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.22 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.2 | |
| 1vku_A | 100 | Acyl carrier protein; TM0175, structural genomics, | 91.16 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 91.13 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 91.08 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 91.0 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 91.0 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 90.99 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 90.94 | |
| 2fq1_A | 287 | Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy | 90.75 | |
| 2kw2_A | 101 | Specialized acyl carrier protein; structural genom | 90.64 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 90.6 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 90.6 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 90.44 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 90.42 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 90.37 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 90.33 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 90.32 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 90.17 | |
| 1fh1_A | 92 | NODF, nodulation protein F; ROOT nodulation factor | 90.11 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 90.07 | |
| 4dxe_H | 101 | ACP, acyl carrier protein; acyl-carrier-protein sy | 90.04 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.02 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 89.86 | |
| 2l4b_A | 88 | Acyl carrier protein; infectious disease, human gr | 89.47 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 89.25 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 89.19 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 89.16 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 89.06 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 88.99 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 88.97 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 88.57 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 88.37 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 88.29 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 87.89 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 87.71 | |
| 2lki_A | 105 | Putative uncharacterized protein; helical bundle, | 87.52 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 87.09 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 86.76 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 86.7 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 86.66 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 86.55 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 86.48 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 86.29 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 86.02 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 85.91 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 85.9 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 85.71 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 85.65 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 85.61 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 85.44 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 85.44 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 85.11 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 85.1 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 84.83 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 84.78 | |
| 2nvu_B | 805 | Maltose binding protein/NEDD8-activating enzyme E1 | 84.6 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 84.13 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 83.99 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 83.91 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 83.6 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 83.36 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 83.36 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 83.23 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 82.52 | |
| 2kci_A | 87 | Putative acyl carrier protein; alpha, ACP, PCP, st | 82.28 | |
| 2cgq_A | 113 | Acyl carrier protein ACPA; RV0033, protein transpo | 82.28 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 82.01 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 81.97 | |
| 3ce7_A | 107 | Specific mitochodrial acyl carrier protein; malari | 81.97 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 81.9 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 81.81 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 81.39 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 81.22 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 81.14 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 81.0 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 80.89 | |
| 2l9f_A | 102 | CALE8, meacp; transferase, acyl carrier protein; N | 80.71 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 80.66 |
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=326.24 Aligned_cols=350 Identities=17% Similarity=0.152 Sum_probs=176.6
Q ss_pred CCcchhHHHHhhcccceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee-----ccccceeeCCCCCCCccc
Q 042694 10 SVAPNKFVKAFENNCDLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLVLSPNGKGHAEI 80 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~~~~~~~~~~~~ 80 (554)
+..+.+++. +|++++..+.+ |||++|||||+|++|+++|++ +|+.+ ++.||+......-.+. .
T Consensus 44 ~~~e~~l~~------~w~~~l~~~~i~~~~~ff~lGg~Sl~a~~l~~~~~~-~~~~~~~~~~~~~~t~~~la~~~~~~-~ 115 (508)
T 4f6l_B 44 NEIEQTFVD------VFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKR-FGHHISMQTLYQYKTVRQIVNYMYQN-Q 115 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHH------HHHHHhCCCCCCCCCChHHcCchHHHHHHHHHHHHH-cCCCccHHHHhcCCcHHHHHHHHHhh-c
Confidence 444556666 99987775544 999999999999999999986 88876 3777775322110000 0
Q ss_pred ccccccccCCCCchhHhhh-cc------cchhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-----hH
Q 042694 81 VVQDLVPFGGQATSLVELQ-DG------IGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-----LF 148 (554)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~-~~------~~i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-----~~ 148 (554)
..+..+......+.... .. ......-.+++|||||||||||++|+++|++.+. +|+|+.+. ..
T Consensus 116 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLVTGatG~iG~~l~~~L~~~g~---~V~~l~R~~~~~~~~ 190 (508)
T 4f6l_B 116 --QSLVALPDNLSELQKIVMSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSH---RIYCFIRADNEEIAW 190 (508)
T ss_dssp -----CCCCSTHHHHHHHHHHHHTTCCCSTTSCBCCCEEEEESCTTSHHHHHHHHHTBTTEE---EEEEEEESSSHHHHH
T ss_pred --cccccchhhhHHHHHHhhhcccccccccccccCCCCeEEEECCccchHHHHHHHHHhcCC---EEEEEECCCChHHHH
Confidence 00111111000000000 00 0001112468999999999999999999976553 67776432 23
Q ss_pred HHHHHHcCCc----hhhhccCcEEEEEccCCC-CCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHH
Q 042694 149 KCLKQTYGKS----YQAFMLSKLVPAVGNVCE-NNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRL 223 (554)
Q Consensus 149 ~~l~~~~~~~----~~~~~~~kv~~v~GDl~~-~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~l 223 (554)
.++.+..... .......++.++.||+++ +.++ +..++|+|||+||.+++..+++.++++|+.||.++
T Consensus 191 ~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~--------~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~l 262 (508)
T 4f6l_B 191 YKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV--------LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDV 262 (508)
T ss_dssp HHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC--------CSSCCSEEEECCCC--------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhccCceEEEecCCcccccCC--------CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHH
Confidence 3443322111 122345799999999999 6665 56799999999999999889999999999999999
Q ss_pred HHHHHHcCCCceEEEEeeceecccccc-eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHH
Q 042694 224 MEFAKQCNKLKLFVQVSTAYVNGQRRG-KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQ 302 (554)
Q Consensus 224 l~la~~~~~~k~~v~vST~~v~~~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae 302 (554)
+++|++ +.++|||+||.++ |...+ ...+.++++.+...+. .+.. .|..+|+.+|
T Consensus 263 l~~a~~--~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~~~----------~~~~------------~Y~~sK~~~E 317 (508)
T 4f6l_B 263 IRLAQQ--HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKGQ----------LLTS------------PYTRSKFYSE 317 (508)
T ss_dssp HHHHHT--TTCEEEEEEESCT-TSEECTTCSCCEECTTCSCSSB----------CCCS------------HHHHHHHHHH
T ss_pred HHHHHh--CCCcEEEeCChhh-ccCCccCCcCcccccccccccc----------cCCC------------cHHHHHHHHH
Confidence 999997 6789999999999 54211 1122333332221000 0111 3555678888
Q ss_pred HHHhhhhhcCCCcEEEEccceeeecccCCccccccCC---CCccceeeeec-cceeeeeecCCCcccccchhhHHHHHHH
Q 042694 303 KMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGN---RMMDPIILYYG-KGQLTGFLVDPNGILDVVPADMVVNATL 378 (554)
Q Consensus 303 ~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~---~~~~~i~~~~~-~G~~~~~~~~~~~~~d~vpVD~va~aii 378 (554)
.++..+.+ .|++++|+||+.|+|+... +|.... ..+..++.... .+.++. ++++...+++||||+|++++
T Consensus 318 ~~~~~~~~-~gi~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~g~~~~~~v~v~DvA~ai~ 391 (508)
T 4f6l_B 318 LKVLEAVN-NGLDGRIVRVGNLTSPYNG---RWHMRNIKTNRFSMVMNDLLQLDCIGV--SMAEMPVDFSFVDTTARQIV 391 (508)
T ss_dssp HHHHHHHH-TTCEEEEEEECCEESCSSS---CCCCTTCTTCHHHHHHHHHTTCSEEET--TGGGSEEECEEHHHHHHHHH
T ss_pred HHHHHHHH-cCCCEEEEecceeccCCCC---CcccCCcchHHHHHHHHHHHHcCCCCC--CccCceEEEEcHHHHHHHHH
Confidence 88777654 5999999999999998764 331110 00111111111 222321 23577899999999999999
Q ss_pred HHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHh
Q 042694 379 AAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHY 418 (554)
Q Consensus 379 ~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~ 418 (554)
.++.... .+++||++++ ++++|.|+++.+.+..
T Consensus 392 ~~~~~~~-----~~~~~nl~~~--~~~s~~el~~~i~~~~ 424 (508)
T 4f6l_B 392 ALAQVNT-----PQIIYHVLSP--NKMPVKSLLECVKRKE 424 (508)
T ss_dssp HHTTBCC-----SCSEEEESCS--CEEEHHHHHHHHHSSC
T ss_pred HHHhCCC-----CCCEEEeCCC--CCCCHHHHHHHHHHcC
Confidence 9876533 3589999999 7999999999999764
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=266.15 Aligned_cols=268 Identities=14% Similarity=0.151 Sum_probs=189.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|+|||||||||||++|+++|++.++ +|+++.+. ....+...... .......++.++.||+.++ +
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~------~ 92 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ---VVIGLDNFSTGHQYNLDEVKTL-VSTEQWSRFCFIEGDIRDL------T 92 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCHHHHHHHHHT-SCHHHHTTEEEEECCTTCH------H
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCCCchhhhhhhhhc-cccccCCceEEEEccCCCH------H
Confidence 5789999999999999999999999886 45555431 11111111100 0001126899999999987 8
Q ss_pred HHHHHhcCccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCC
Q 042694 185 LADVIAKEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGD 261 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~ 261 (554)
.+..+++++|+|||+||..... ..+...+++|+.||.+++++|++. ++++|||+||.++|+...+ .++.+..
T Consensus 93 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~vyg~~~~----~~~~E~~ 167 (351)
T 3ruf_A 93 TCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA-QVQSFTYAASSSTYGDHPA----LPKVEEN 167 (351)
T ss_dssp HHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCC----SSBCTTC
T ss_pred HHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEecHHhcCCCCC----CCCccCC
Confidence 8999999999999999987653 356678999999999999999985 7999999999999987431 2232222
Q ss_pred CcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCC
Q 042694 262 SIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRM 341 (554)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~ 341 (554)
+. .+.. .|..+|..+|.+++.+....|++++|+||+.|||+...+...+.. .
T Consensus 168 ~~-------------~p~~------------~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~---~ 219 (351)
T 3ruf_A 168 IG-------------NPLS------------PYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAA---V 219 (351)
T ss_dssp CC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCC---H
T ss_pred CC-------------CCCC------------hhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhh---H
Confidence 21 1111 234456677777766555568999999999999987654211100 1
Q ss_pred ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 342 MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 342 ~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
...++..+..|....++++++...++|+|||+|++++.++..... ..+++||++++ .++++.|+++.+.+.+|..
T Consensus 220 ~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~---~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~ 294 (351)
T 3ruf_A 220 IPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDS---AKDNIYNVAVG--DRTTLNELSGYIYDELNLI 294 (351)
T ss_dssp HHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGG---GCSEEEEESCS--CCEEHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhccc---cCCCEEEeCCC--CcccHHHHHHHHHHHhCcc
Confidence 111122222344334557888899999999999999988765211 13589999998 7999999999999999985
Q ss_pred CC
Q 042694 422 PC 423 (554)
Q Consensus 422 p~ 423 (554)
+.
T Consensus 295 ~~ 296 (351)
T 3ruf_A 295 HH 296 (351)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=263.90 Aligned_cols=263 Identities=20% Similarity=0.183 Sum_probs=185.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+|||||||||||++|+++|++.++.+ +|++++............. .....++.++.||+.++ +.+.
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~-~v~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~Dl~d~------~~~~ 91 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETY-KIINFDALTYSGNLNNVKS---IQDHPNYYFVKGEIQNG------ELLE 91 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTE-EEEEEECCCTTCCGGGGTT---TTTCTTEEEEECCTTCH------HHHH
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCc-EEEEEeccccccchhhhhh---hccCCCeEEEEcCCCCH------HHHH
Confidence 467899999999999999999999998776 6776653211100001100 01135899999999987 8888
Q ss_pred HHhcC--ccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCC
Q 042694 188 VIAKE--VDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 188 ~l~~~--vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
.++++ +|+|||+||..... +.+...+++|+.||.+++++|++. ++++|||+||.++|+... ...++++.++
T Consensus 92 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~vy~~~~---~~~~~~E~~~ 167 (346)
T 4egb_A 92 HVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PHIKLVQVSTDEVYGSLG---KTGRFTEETP 167 (346)
T ss_dssp HHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHS-TTSEEEEEEEGGGGCCCC---SSCCBCTTSC
T ss_pred HHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeCchHHhCCCC---cCCCcCCCCC
Confidence 88876 99999999987654 567788999999999999999995 889999999999998742 1223333222
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCc
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMM 342 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~ 342 (554)
. .+.. .|..+|..+|.++..+....|++++|+||+.|||+...+. .++
T Consensus 168 ~-------------~p~~------------~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-~~~------ 215 (346)
T 4egb_A 168 L-------------APNS------------PYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE-KLI------ 215 (346)
T ss_dssp C-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-SHH------
T ss_pred C-------------CCCC------------hhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCcc-chH------
Confidence 1 1111 2334466677776665555699999999999999766321 111
Q ss_pred cceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 343 DPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 343 ~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
..++..+..|....++++++...++|+|||+|++++.++.... .+++||++++ +++++.|+++.+.+.+|..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-----~g~~~~i~~~--~~~s~~e~~~~i~~~~g~~~ 288 (346)
T 4egb_A 216 PLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGR-----VGEVYNIGGN--NEKTNVEVVEQIITLLGKTK 288 (346)
T ss_dssp HHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCC-----TTCEEEECCS--CCEEHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCC-----CCCEEEECCC--CceeHHHHHHHHHHHhCCCc
Confidence 1111222233322345778888999999999999999887643 3579999998 78999999999999999864
Q ss_pred C
Q 042694 423 C 423 (554)
Q Consensus 423 ~ 423 (554)
.
T Consensus 289 ~ 289 (346)
T 4egb_A 289 K 289 (346)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=276.00 Aligned_cols=286 Identities=22% Similarity=0.286 Sum_probs=197.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCc-cEEEEEcch-----hHHHHHHHcCCc-------hhhhccCcEEEEEccC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDV-GKIFIINAE-----LFKCLKQTYGKS-------YQAFMLSKLVPAVGNV 174 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V-~~i~~~~~~-----~~~~l~~~~~~~-------~~~~~~~kv~~v~GDl 174 (554)
.++|+|||||||||||++|+++|++..+ + .+|+++.+. ...++.+..... +......++.++.||+
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~-~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 149 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLD-VDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK 149 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSC-TTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCC-CCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence 5689999999999999999999999833 2 377777532 223333333221 1122346899999999
Q ss_pred CCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeec
Q 042694 175 CENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVME 254 (554)
Q Consensus 175 ~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E 254 (554)
+++.+|++.+.++.+.+++|+|||+||.+++ .+++..+++|+.||.+++++|++ .++++|||+||.++++... .
T Consensus 150 ~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~-~~~~~~~~~Nv~gt~~ll~aa~~-~~~~~~V~iSS~~v~~~~~----~ 223 (478)
T 4dqv_A 150 SEPDLGLDQPMWRRLAETVDLIVDSAAMVNA-FPYHELFGPNVAGTAELIRIALT-TKLKPFTYVSTADVGAAIE----P 223 (478)
T ss_dssp TSGGGGCCHHHHHHHHHHCCEEEECCSSCSB-SSCCEEHHHHHHHHHHHHHHHTS-SSCCCEEEEEEGGGGTTSC----T
T ss_pred CCcccCCCHHHHHHHHcCCCEEEECccccCC-cCHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeehhhcCccC----C
Confidence 9999999999999999999999999999988 77888899999999999999998 4889999999999987632 2
Q ss_pred cccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC----
Q 042694 255 KPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE---- 330 (554)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~---- 330 (554)
.++.+..+..+.... ...+. .....|..+|+.+|.++..+....|++++|+||+.|||+...
T Consensus 224 ~~~~E~~~~~p~~~~-------~~~~~-------~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~ 289 (478)
T 4dqv_A 224 SAFTEDADIRVISPT-------RTVDG-------GWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQL 289 (478)
T ss_dssp TTCCSSSCHHHHCCE-------EECCT-------TSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCC
T ss_pred CCcCCcccccccCcc-------ccccc-------ccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcC
Confidence 233333221111100 00000 000135666788888777666545899999999999997541
Q ss_pred CccccccCCCCccceeeeeccceeeee-ecC------CCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGF-LVD------PNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVN 403 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~-~~~------~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~ 403 (554)
...+|+.. .+......|..+.. +++ .+..++++||||||++++.++..........+++||++++..+
T Consensus 290 ~~~~~~~~-----l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~ 364 (478)
T 4dqv_A 290 NMSDWVTR-----MVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDD 364 (478)
T ss_dssp CTTBHHHH-----HHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCS
T ss_pred CHHHHHHH-----HHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCC
Confidence 12233221 01111123444322 111 2577899999999999999887522112234689999998434
Q ss_pred cccHHHHHHHHHhHhcc
Q 042694 404 PLVFQDLARLLHEHYSA 420 (554)
Q Consensus 404 ~it~~e~~~~~~~~~~~ 420 (554)
+++|.|+++.+.+. +.
T Consensus 365 ~~s~~el~~~l~~~-g~ 380 (478)
T 4dqv_A 365 GIGLDEYVDWLIEA-GY 380 (478)
T ss_dssp SCSHHHHHHHHHHT-TC
T ss_pred CcCHHHHHHHHHHc-CC
Confidence 49999999999986 43
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=254.38 Aligned_cols=246 Identities=13% Similarity=0.088 Sum_probs=182.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|||||||||||++|+++|+++++ +|+++.+.. ... . ..++.++.+|+. + +.+..+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~-~~~---------~--~~~~~~~~~Dl~-~------~~~~~~ 59 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN---TPIILTRSI-GNK---------A--INDYEYRVSDYT-L------EDLINQ 59 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCC-C----------------CCEEEECCCC-H------HHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCCC-Ccc---------c--CCceEEEEcccc-H------HHHHHh
Confidence 47899999999999999999999876 566655421 000 0 126788999999 8 889999
Q ss_pred hcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccccc
Q 042694 190 AKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFV 269 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~ 269 (554)
++++|+|||+||..... ++...+++|+.||.+++++|++. ++++|||+||.++|+... ..++.+.++.
T Consensus 60 ~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~ll~a~~~~-~~~r~v~~SS~~vyg~~~----~~~~~E~~~~------ 127 (311)
T 3m2p_A 60 LNDVDAVVHLAATRGSQ-GKISEFHDNEILTQNLYDACYEN-NISNIVYASTISAYSDET----SLPWNEKELP------ 127 (311)
T ss_dssp TTTCSEEEECCCCCCSS-SCGGGTHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCCCGG----GCSBCTTSCC------
T ss_pred hcCCCEEEEccccCCCC-ChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccHHHhCCCC----CCCCCCCCCC------
Confidence 99999999999987765 56678899999999999999984 799999999999998643 1223322221
Q ss_pred ccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeee
Q 042694 270 SNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYY 349 (554)
Q Consensus 270 ~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~ 349 (554)
.+.+ .|..+|+.+|.++..+..+.|++++|+||+.|||+...+. +++ ..++..+
T Consensus 128 -------~p~~------------~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-~~~------~~~~~~~ 181 (311)
T 3m2p_A 128 -------LPDL------------MYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN-YMI------NRFFRQA 181 (311)
T ss_dssp -------CCSS------------HHHHHHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--C-CHH------HHHHHHH
T ss_pred -------CCCc------------hhHHHHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCC-CHH------HHHHHHH
Confidence 1111 2344566777777766665799999999999999876431 111 1112222
Q ss_pred ccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 350 GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 350 ~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
..|....++++++...++++|+|+|++++.++.... .+++||++++ .++++.|+++.+.+.+|..+
T Consensus 182 ~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~-----~~~~~~i~~~--~~~s~~e~~~~i~~~~g~~~ 247 (311)
T 3m2p_A 182 FHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEK-----VSGTFNIGSG--DALTNYEVANTINNAFGNKD 247 (311)
T ss_dssp HTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTT-----CCEEEEECCS--CEECHHHHHHHHHHHTTCTT
T ss_pred HcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCC-----CCCeEEeCCC--CcccHHHHHHHHHHHhCCCC
Confidence 234444455778888999999999999998876532 3589999998 79999999999999999764
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=252.56 Aligned_cols=258 Identities=14% Similarity=0.129 Sum_probs=180.1
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
..++|+|||||||||||++|+++|++.|++| +++++.. ...++.++.+|+.++ +.+
T Consensus 16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V---~~~~r~~---------------~~~~~~~~~~Dl~d~------~~~ 71 (347)
T 4id9_A 16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTV---RGFDLRP---------------SGTGGEEVVGSLEDG------QAL 71 (347)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCE---EEEESSC---------------CSSCCSEEESCTTCH------HHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCEE---EEEeCCC---------------CCCCccEEecCcCCH------HHH
Confidence 3578899999999999999999999988754 4444321 014677899999987 888
Q ss_pred HHHhcCccEEEEcCCCCCchh-hHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 187 DVIAKEVDVIVNSAANTTFDE-RYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~~~-~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
..+++++|+|||+||...... ..+..+++|+.||.+++++|++ .++++|||+||.+||+.... ...++.+..+.
T Consensus 72 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~-~~~~~~V~~SS~~vyg~~~~--~~~~~~E~~~~-- 146 (347)
T 4id9_A 72 SDAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASA-AGVRRFVFASSGEVYPENRP--EFLPVTEDHPL-- 146 (347)
T ss_dssp HHHHTTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHH-TTCSEEEEEEEGGGTTTTSC--SSSSBCTTSCC--
T ss_pred HHHHhCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEECCHHHhCCCCC--CCCCcCCCCCC--
Confidence 889999999999999877643 4588999999999999999998 48999999999999987311 12222222211
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee-------------ecccCCc
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE-------------STCKEPF 332 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~-------------g~~~~p~ 332 (554)
.+.. .|..+|..+|.+++.+....+++++|+||+.|| |+...+.
T Consensus 147 -----------~~~~------------~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~ 203 (347)
T 4id9_A 147 -----------CPNS------------PYGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLR 203 (347)
T ss_dssp -----------CCCS------------HHHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHH
T ss_pred -----------CCCC------------hHHHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccc
Confidence 1111 234456677777776666679999999999999 6543211
Q ss_pred ccccc----CCCCccceeeeeccceeeeeecCCCccccc----chhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCc
Q 042694 333 SGWME----GNRMMDPIILYYGKGQLTGFLVDPNGILDV----VPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNP 404 (554)
Q Consensus 333 ~g~~~----~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~----vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~ 404 (554)
..+.+ .......++.....|....++++++...++ ++|+|+|++++.++..... .+++||++++ .+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~----~~~~~ni~~~--~~ 277 (347)
T 4id9_A 204 PRIHQQQNFGNAAIAELLQSRDIGEPSHILARNENGRPFRMHITDTRDMVAGILLALDHPEA----AGGTFNLGAD--EP 277 (347)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGGG----TTEEEEESCS--SC
T ss_pred cccccccccchhHHHHHHHHHHcCCCeEEeCCCCcccCCccCcEeHHHHHHHHHHHhcCccc----CCCeEEECCC--Cc
Confidence 00000 000011111112233322344667777888 9999999999999876532 2589999998 79
Q ss_pred ccHHHHHHHHHhHhccCC
Q 042694 405 LVFQDLARLLHEHYSASP 422 (554)
Q Consensus 405 it~~e~~~~~~~~~~~~p 422 (554)
+++.|+++.+.+.+|..+
T Consensus 278 ~s~~e~~~~i~~~~g~~~ 295 (347)
T 4id9_A 278 ADFAALLPKIAALTGLPI 295 (347)
T ss_dssp EEHHHHHHHHHHHHCCCE
T ss_pred ccHHHHHHHHHHHhCCCC
Confidence 999999999999998753
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=253.80 Aligned_cols=271 Identities=17% Similarity=0.157 Sum_probs=186.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCC-CCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVC-ENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~-~~~lGLs~~~ 185 (554)
.++|+|||||||||||++|+++|+++ ++ +|+++++.. ..+ . ......++.++.||++ ++ +.
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~-~~~----~---~~~~~~~v~~~~~Dl~~d~------~~ 84 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDW---EVFGMDMQT-DRL----G---DLVKHERMHFFEGDITINK------EW 84 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSC---EEEEEESCC-TTT----G---GGGGSTTEEEEECCTTTCH------HH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCC---EEEEEeCCh-hhh----h---hhccCCCeEEEeCccCCCH------HH
Confidence 46789999999999999999999998 65 556655321 000 0 0012368999999999 65 88
Q ss_pred HHHHhcCccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCC
Q 042694 186 ADVIAKEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
+..+++++|+|||+||..... .++...+++|+.||.+++++|++. + ++|||+||.++|+...+ .++.+.+.
T Consensus 85 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~-~~~v~~SS~~vyg~~~~----~~~~e~~~ 158 (372)
T 3slg_A 85 VEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSEVYGMCAD----EQFDPDAS 158 (372)
T ss_dssp HHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH-T-CEEEEECCGGGGBSCCC----SSBCTTTC
T ss_pred HHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-C-CcEEEeCcHHHhCCCCC----CCCCcccc
Confidence 888888999999999987753 356788999999999999999986 5 89999999999987431 22222221
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCC-C
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNR-M 341 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~-~ 341 (554)
..+.. +.... .. .|..+|..+|.++...... |++++|+||+.|||+...+..++..... .
T Consensus 159 ~~~~~---------p~~~p---~~------~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~ 219 (372)
T 3slg_A 159 ALTYG---------PINKP---RW------IYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRV 219 (372)
T ss_dssp CEEEC---------CTTCT---TH------HHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHH
T ss_pred ccccC---------CCCCC---CC------cHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchH
Confidence 10000 00000 01 2334456677776665555 9999999999999987654222111100 1
Q ss_pred ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 342 MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 342 ~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
...++..+..|....++++++...++++|+|+|++++.++..... ...+++||++++. +++|+.|+++.+.+.+|..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~--~~~~~~~ni~~~~-~~~s~~e~~~~i~~~~g~~ 296 (372)
T 3slg_A 220 VTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNG--VATGKIYNIGNPN-NNFSVRELANKMLELAAEF 296 (372)
T ss_dssp HHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHCGGG--TTTTEEEEECCTT-CEEEHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhcccC--cCCCceEEeCCCC-CCccHHHHHHHHHHHhCCC
Confidence 111122222344334556778889999999999999998876431 1235899999931 6999999999999999976
Q ss_pred CC
Q 042694 422 PC 423 (554)
Q Consensus 422 p~ 423 (554)
+.
T Consensus 297 ~~ 298 (372)
T 3slg_A 297 PE 298 (372)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=250.65 Aligned_cols=253 Identities=8% Similarity=0.022 Sum_probs=177.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+|||||||||||++|+++|++.++.- . .....+..+.+|++++ +.+.
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~------------------~-----~~~~~~~~~~~D~~d~------~~~~ 54 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAGLP------------------G-----EDWVFVSSKDADLTDT------AQTR 54 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTCCT------------------T-----CEEEECCTTTCCTTSH------HHHH
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCCcc------------------c-----ccccccCceecccCCH------HHHH
Confidence 468899999999999999999999977510 0 0112344567899887 7788
Q ss_pred HHhcC--ccEEEEcCCCCCc----hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc-eeeccccCCC
Q 042694 188 VIAKE--VDVIVNSAANTTF----DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG-KVMEKPFCMG 260 (554)
Q Consensus 188 ~l~~~--vdiViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~-~i~E~~~~~~ 260 (554)
.++++ +|+|||+||.+.. .+++...+++|+.||.+++++|++. ++++|||+||.++|+...+ .++|......
T Consensus 55 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~ 133 (319)
T 4b8w_A 55 ALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV-GARKVVSCLSTCIFPDKTTYPIDETMIHNG 133 (319)
T ss_dssp HHHHHSCCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGGGSCSSCCSSBCGGGGGBS
T ss_pred HHHhhcCCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEEcchhhcCCCCCCCccccccccC
Confidence 88775 9999999998762 3467788999999999999999985 7999999999999986431 2222210000
Q ss_pred CCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccc---ccc
Q 042694 261 DSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSG---WME 337 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g---~~~ 337 (554)
+ ..+.. . .|..+|+.+|.+++.+.+..+++++|+||+.|||+...+... ++.
T Consensus 134 -~-------------~~p~~-----~------~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~ 188 (319)
T 4b8w_A 134 -P-------------PHNSN-----F------GYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLP 188 (319)
T ss_dssp -C-------------CCSSS-----H------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHH
T ss_pred -C-------------CCCCc-----c------hHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccH
Confidence 0 00100 0 133446667777666555568999999999999987643211 111
Q ss_pred CCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 338 GNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 338 ~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
. ....++.....|....++++++...++++|||+|++++.++..... ..+.+||++++ .++++.|+++.+.+.
T Consensus 189 ~--~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~---~~~~~~ni~~~--~~~s~~e~~~~i~~~ 261 (319)
T 4b8w_A 189 G--LIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNE---VEPIILSVGEE--DEVSIKEAAEAVVEA 261 (319)
T ss_dssp H--HHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCCC---SSCEEECCCGG--GCEEHHHHHHHHHHH
T ss_pred H--HHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhcccc---CCceEEEecCC--CceeHHHHHHHHHHH
Confidence 0 0011110122343334557788889999999999999998876332 23579999998 799999999999999
Q ss_pred hccCC
Q 042694 418 YSASP 422 (554)
Q Consensus 418 ~~~~p 422 (554)
+|..+
T Consensus 262 ~g~~~ 266 (319)
T 4b8w_A 262 MDFHG 266 (319)
T ss_dssp TTCCS
T ss_pred hCCCC
Confidence 98653
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-28 Score=245.61 Aligned_cols=263 Identities=12% Similarity=0.084 Sum_probs=180.4
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch------hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCC
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE------LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLE 182 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~------~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs 182 (554)
.+|+|||||||||||++|+++|++.|. +|+++++. ..+.+... ...++.++.+|++++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~d~----- 67 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGY---DVVIADNLVNSKREAIARIEKI--------TGKTPAFHETDVSDE----- 67 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECCCSSSCTHHHHHHHHH--------HSCCCEEECCCTTCH-----
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCC---cEEEEecCCcchHHHHHHHHhh--------cCCCceEEEeecCCH-----
Confidence 467999999999999999999999886 45555421 11222211 234788999999987
Q ss_pred HHHHHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeecccc
Q 042694 183 EDLADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPF 257 (554)
Q Consensus 183 ~~~~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~ 257 (554)
+.+..+++ ++|+|||+||..... +...+.++.|+.||.+++++|++. +.++|||+||.++++... ..++
T Consensus 68 -~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g~~~----~~~~ 141 (341)
T 3enk_A 68 -RALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER-AVKRIVFSSSATVYGVPE----RSPI 141 (341)
T ss_dssp -HHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGBCSCS----SSSB
T ss_pred -HHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEecceEecCCC----CCCC
Confidence 88888887 899999999987653 345688999999999999999984 789999999999997642 1222
Q ss_pred CCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc-CCCcEEEEccceeeecccCCccccc
Q 042694 258 CMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER-GDIPVVIIRPSVIESTCKEPFSGWM 336 (554)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~-~glp~~I~Rp~~V~g~~~~p~~g~~ 336 (554)
.+..+. .+.. .|..+|..+|.++..+... .+++++++||+.|||+....+.|..
T Consensus 142 ~e~~~~-------------~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~ 196 (341)
T 3enk_A 142 DETFPL-------------SATN------------PYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGED 196 (341)
T ss_dssp CTTSCC-------------BCSS------------HHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCC
T ss_pred CCCCCC-------------CCCC------------hhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCC
Confidence 222211 1111 2334456666666654433 3599999999999998654333321
Q ss_pred cCC--CCccceeeeeccc--eeeeeec------CCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCccc
Q 042694 337 EGN--RMMDPIILYYGKG--QLTGFLV------DPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLV 406 (554)
Q Consensus 337 ~~~--~~~~~i~~~~~~G--~~~~~~~------~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it 406 (554)
... ....+.+.....| ....+.+ +++...+++||||+|++++.++..... ...+++||++++ ++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~--~~~~~~~ni~~~--~~~s 272 (341)
T 3enk_A 197 PAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALER--RDASLTVNLGTG--RGYS 272 (341)
T ss_dssp CSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHH--HTSCEEEEESCS--CCEE
T ss_pred cccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhc--CCcceEEEeCCC--Ccee
Confidence 110 0111111111111 1111223 678889999999999999998876311 112589999998 7999
Q ss_pred HHHHHHHHHhHhccCC
Q 042694 407 FQDLARLLHEHYSASP 422 (554)
Q Consensus 407 ~~e~~~~~~~~~~~~p 422 (554)
+.|+++.+.+.+|..+
T Consensus 273 ~~e~~~~i~~~~g~~~ 288 (341)
T 3enk_A 273 VLEVVRAFEKASGRAV 288 (341)
T ss_dssp HHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHhCCCc
Confidence 9999999999998753
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=247.22 Aligned_cols=264 Identities=16% Similarity=0.135 Sum_probs=183.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch------hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE------LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~------~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
.++|+|||||||||||++|+++|++.+. +|+++++. ..+.+.+.... ....++.++.+|++++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~---- 93 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQ---KVVGLDNFATGHQRNLDEVRSLVSE----KQWSNFKFIQGDIRNL---- 93 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCHHHHHHHHHHSCH----HHHTTEEEEECCTTSH----
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCccchhhHHHHhhhccc----ccCCceEEEECCCCCH----
Confidence 5688999999999999999999999876 45555431 12222222110 0125789999999987
Q ss_pred CHHHHHHHhcCccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccC
Q 042694 182 EEDLADVIAKEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFC 258 (554)
Q Consensus 182 s~~~~~~l~~~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~ 258 (554)
+.+..+++++|+|||+||..... +.+...+++|+.||.+++++|++. ++++|||+||.++++...+ .+++
T Consensus 94 --~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~----~~~~ 166 (352)
T 1sb8_A 94 --DDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDHPG----LPKV 166 (352)
T ss_dssp --HHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCC----SSBC
T ss_pred --HHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHhcCCCCC----CCCC
Confidence 88888889999999999987643 457788999999999999999984 7899999999999986431 1222
Q ss_pred CCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC
Q 042694 259 MGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG 338 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~ 338 (554)
+.++. .+.. .|..+|..+|.++..+....|++++|+||+.|||+...+...+. .
T Consensus 167 E~~~~-------------~~~~------------~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~-~ 220 (352)
T 1sb8_A 167 EDTIG-------------KPLS------------PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYA-A 220 (352)
T ss_dssp TTCCC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTC-C
T ss_pred CCCCC-------------CCCC------------hhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchh-h
Confidence 22110 1111 23334566666665544445899999999999998654321110 0
Q ss_pred CCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHh
Q 042694 339 NRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHY 418 (554)
Q Consensus 339 ~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~ 418 (554)
....++..+..|....++++++...++++|+|+|++++.++..... ..+++||++++ .++++.|+++.+.+.+
T Consensus 221 --~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~---~~~~~~ni~~~--~~~s~~e~~~~i~~~~ 293 (352)
T 1sb8_A 221 --VIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLD---ARNQVYNIAVG--GRTSLNQLFFALRDGL 293 (352)
T ss_dssp --HHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGG---GCSEEEEESCS--CCEEHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcccc---CCCceEEeCCC--CCccHHHHHHHHHHHH
Confidence 0011111122333334457778889999999999999887764211 13589999998 7999999999999999
Q ss_pred ---ccCC
Q 042694 419 ---SASP 422 (554)
Q Consensus 419 ---~~~p 422 (554)
|..+
T Consensus 294 ~~~g~~~ 300 (352)
T 1sb8_A 294 AENGVSY 300 (352)
T ss_dssp HHTTCCC
T ss_pred HhcCCCC
Confidence 7643
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-28 Score=248.65 Aligned_cols=258 Identities=15% Similarity=0.121 Sum_probs=178.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHh--hCCCccEEEEEcchhH-HHHH-HHc--CCchhhhccCcEEEEEccCCCCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILR--TVPDVGKIFIINAELF-KCLK-QTY--GKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~--~~~~V~~i~~~~~~~~-~~l~-~~~--~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
.++|+|||||||||||++|+++|++ .+. +|+++++... .... ... ..........++.++.+|++++
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---- 80 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPKA---KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNP---- 80 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTTS---EEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCH----
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCCC---eEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCH----
Confidence 4678999999999999999999999 665 5565543111 0000 000 0111122334678999999988
Q ss_pred CHHHHHHH-hcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCC
Q 042694 182 EEDLADVI-AKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 182 s~~~~~~l-~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
+.++.+ ..++|+|||+||.+.. .++++..+++|+.||.+++++|++. +.+ |||+||+++|+...+ ++++
T Consensus 81 --~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~-~V~~SS~~vyg~~~~-----~~~E 151 (362)
T 3sxp_A 81 --LDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSK-KAK-VIYASSAGVYGNTKA-----PNVV 151 (362)
T ss_dssp --HHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHT-TCE-EEEEEEGGGGCSCCS-----SBCT
T ss_pred --HHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHc-CCc-EEEeCcHHHhCCCCC-----CCCC
Confidence 888888 7899999999998765 3578899999999999999999984 676 999999999987543 2222
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCC
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGN 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~ 339 (554)
.++. .+.. .|..+|..+|.++..+... ++++++||+.|||+...+...+. .
T Consensus 152 ~~~~-------------~p~~------------~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~-~- 202 (362)
T 3sxp_A 152 GKNE-------------SPEN------------VYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTA-S- 202 (362)
T ss_dssp TSCC-------------CCSS------------HHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGS-C-
T ss_pred CCCC-------------CCCC------------hhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcch-h-
Confidence 2211 1111 2333455556655544332 89999999999998764321110 0
Q ss_pred CCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhc
Q 042694 340 RMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYS 419 (554)
Q Consensus 340 ~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~ 419 (554)
....++..+..|.....+++++...++++|+|+|++++.++.... .+ +||++++ .++++.|+++.+.+.++
T Consensus 203 -~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~~-----~g-~~~i~~~--~~~s~~e~~~~i~~~~g 273 (362)
T 3sxp_A 203 -MVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQK-----SG-VYNVGYS--QARSYNEIVSILKEHLG 273 (362)
T ss_dssp -HHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCSS-----CE-EEEESCS--CEEEHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcCC-----CC-EEEeCCC--CCccHHHHHHHHHHHcC
Confidence 111112222234333444667788999999999999998875421 24 9999998 79999999999999999
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=241.79 Aligned_cols=256 Identities=19% Similarity=0.201 Sum_probs=177.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+|+|||||||||||++|+++|++.+++. +|+++++.. .+.+. . . ....++.++.+|++++ +.
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~-~V~~~~r~~~~~~~~~~~----~-~--~~~~~~~~~~~Dl~d~------~~ 68 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDW-EVINIDKLGYGSNPANLK----D-L--EDDPRYTFVKGDVADY------EL 68 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTC-EEEEEECCCTTCCGGGGT----T-T--TTCTTEEEEECCTTCH------HH
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCC-EEEEEecCcccCchhHHh----h-h--ccCCceEEEEcCCCCH------HH
Confidence 4689999999999999999999987443 666665321 11110 0 0 0134789999999987 88
Q ss_pred HHHHhcCccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCC
Q 042694 186 ADVIAKEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
+..++.++|+|||+||..... ++++..+++|+.||.+++++|.+.+..++|||+||.++|+... +.++++..+
T Consensus 69 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~----~~~~~E~~~ 144 (336)
T 2hun_A 69 VKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDIL----KGSFTENDR 144 (336)
T ss_dssp HHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCS----SSCBCTTBC
T ss_pred HHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCC----CCCcCCCCC
Confidence 888889999999999987643 3567889999999999999999863347999999999988642 122222211
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCc
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMM 342 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~ 342 (554)
. ++.. .|..+|..+|.+++.+....|++++++||+.|||+...+ .+.+
T Consensus 145 ~-------------~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~-~~~~------ 192 (336)
T 2hun_A 145 L-------------MPSS------------PYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFP-EKLI------ 192 (336)
T ss_dssp C-------------CCCS------------HHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCT-TSHH------
T ss_pred C-------------CCCC------------ccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCc-CchH------
Confidence 0 1111 233445666666665555568999999999999976532 1111
Q ss_pred cceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 343 DPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 343 ~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
..++..+..|....++++++...++++++|+|++++.++.... .+++||++++ .++++.|+++.+.+.+|..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~-----~g~~~~v~~~--~~~s~~e~~~~i~~~~g~~~ 265 (336)
T 2hun_A 193 PKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGE-----SREIYNISAG--EEKTNLEVVKIILRLMGKGE 265 (336)
T ss_dssp HHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHCC-----TTCEEEECCS--CEECHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCCC-----CCCEEEeCCC--CcccHHHHHHHHHHHhCCCc
Confidence 0111111122222234566777899999999999998876422 3579999998 78999999999999998753
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-27 Score=237.97 Aligned_cols=260 Identities=13% Similarity=0.168 Sum_probs=178.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
||+|||||||||||++|+++|++.++ +|+++++.... . ......++.++.+|+.++ +.++.+
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~-----~----~~~~~~~~~~~~~D~~~~------~~~~~~ 62 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGL---SVVVVDNLQTG-----H----EDAITEGAKFYNGDLRDK------AFLRDV 62 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSC-----C----GGGSCTTSEEEECCTTCH------HHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCCCcC-----c----hhhcCCCcEEEECCCCCH------HHHHHH
Confidence 47899999999999999999999875 45555432100 0 001123688899999987 788888
Q ss_pred hc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 190 AK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 190 ~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
++ ++|+|||+||..... ++++..+++|+.||.+++++|++. ++++|||+||.++++... ..++++.++.
T Consensus 63 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~~~~----~~~~~E~~~~- 136 (330)
T 2c20_A 63 FTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEF-KVDKFIFSSTAATYGEVD----VDLITEETMT- 136 (330)
T ss_dssp HHHSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGGCSCS----SSSBCTTSCC-
T ss_pred HhhcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHc-CCCEEEEeCCceeeCCCC----CCCCCcCCCC-
Confidence 77 899999999987653 467788999999999999999984 789999999999988642 1222222211
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC-CCCcc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG-NRMMD 343 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~-~~~~~ 343 (554)
.+.. .|..+|..+|.++..+....|++++|+||+.|||+......|..+. .....
T Consensus 137 ------------~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~ 192 (330)
T 2c20_A 137 ------------NPTN------------TYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLI 192 (330)
T ss_dssp ------------CCSS------------HHHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHH
T ss_pred ------------CCCC------------hHHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchH
Confidence 1111 2334456666666655555689999999999999864322221110 00111
Q ss_pred ceeee--eccceeeeeec------CCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHH
Q 042694 344 PIILY--YGKGQLTGFLV------DPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLH 415 (554)
Q Consensus 344 ~i~~~--~~~G~~~~~~~------~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~ 415 (554)
+.+.. .+.+....+++ +++...++|+|||+|++++.++...... ..+++||++++ .++++.|+++.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~~~~~~~~--~~~~~~ni~~~--~~~s~~e~~~~i~ 268 (330)
T 2c20_A 193 PLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNG--GESDFYNLGNG--NGFSVKEIVDAVR 268 (330)
T ss_dssp HHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHHHHHHHHHHHHHHTT--CCCEEEECCCT--TCBCHHHHHHHHH
T ss_pred HHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHHHHHHHHHHhccccC--CCCCeEEeCCC--CCccHHHHHHHHH
Confidence 11111 11121112222 5677899999999999999988754321 12579999988 7899999999999
Q ss_pred hHhccC
Q 042694 416 EHYSAS 421 (554)
Q Consensus 416 ~~~~~~ 421 (554)
+.+|..
T Consensus 269 ~~~g~~ 274 (330)
T 2c20_A 269 EVTNHE 274 (330)
T ss_dssp HHTTSC
T ss_pred HHhCCC
Confidence 998865
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=245.58 Aligned_cols=266 Identities=12% Similarity=0.103 Sum_probs=178.3
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.+++|+|||||||||||++|+++|++.++ +|+++++.. ...+..... ...++.++.+|++++ +
T Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~Dl~d~------~ 70 (357)
T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYSLTAPTVPSLFETAR------VADGMQSEIGDIRDQ------N 70 (357)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCSSSSCHHHHTT------TTTTSEEEECCTTCH------H
T ss_pred hhCCCEEEEECCCchHHHHHHHHHHhCCC---eEEEEeCCCcccchhhHhhc------cCCceEEEEccccCH------H
Confidence 35688999999999999999999999876 455554321 111111110 134788999999987 7
Q ss_pred HHHHHhcC--ccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCC
Q 042694 185 LADVIAKE--VDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 185 ~~~~l~~~--vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
.+..++++ +|+|||+||.... .+.+...+++|+.||.+++++|.+++++++|||+||.++|+...+ ..++.+
T Consensus 71 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~---~~~~~E 147 (357)
T 1rkx_A 71 KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEW---IWGYRE 147 (357)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCS---SSCBCT
T ss_pred HHHHHHHhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCc---CCCCCC
Confidence 78777775 8999999996543 345678899999999999999998645899999999999986431 112221
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc---------CCCcEEEEccceeeecccC
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER---------GDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~---------~glp~~I~Rp~~V~g~~~~ 330 (554)
.++ ..+.. .|..+|..+|.+++..... .|++++++||+.|||+...
T Consensus 148 ~~~-------------~~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~ 202 (357)
T 1rkx_A 148 NEA-------------MGGYD------------PYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDW 202 (357)
T ss_dssp TSC-------------BCCSS------------HHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCC
T ss_pred CCC-------------CCCCC------------ccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCC
Confidence 111 01111 2333456666666554322 3899999999999997653
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHH
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDL 410 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~ 410 (554)
+..+++ ..++..+..|....+ .+++...+++||+|+|++++.++......+...+++||++++..+++++.|+
T Consensus 203 ~~~~~~------~~~~~~~~~g~~~~~-~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~ 275 (357)
T 1rkx_A 203 ALDRIV------PDILRAFEQSQPVII-RNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNI 275 (357)
T ss_dssp CSSCHH------HHHHHHHHTTCCEEC-SCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHH
T ss_pred ccccHH------HHHHHHHhcCCCEEE-CCCCCeeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHH
Confidence 211111 111111222332222 3466788999999999999988764210001124799999742268999999
Q ss_pred HHHHHhHhccCC
Q 042694 411 ARLLHEHYSASP 422 (554)
Q Consensus 411 ~~~~~~~~~~~p 422 (554)
++.+.+.+|..+
T Consensus 276 ~~~i~~~~g~~~ 287 (357)
T 1rkx_A 276 VEQMVKYWGEGA 287 (357)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCCCC
Confidence 999999998653
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=246.17 Aligned_cols=276 Identities=11% Similarity=0.065 Sum_probs=175.3
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHH-------------------HHHHHcCCchhhhccCc
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFK-------------------CLKQTYGKSYQAFMLSK 166 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~-------------------~l~~~~~~~~~~~~~~k 166 (554)
.+.++++|||||||||||++|+++|++.|+ +|++++..... .+.... .....+
T Consensus 7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~ 78 (404)
T 1i24_A 7 HHHHGSRVMVIGGDGYCGWATALHLSKKNY---EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK-----ALTGKS 78 (404)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHH-----HHHCCC
T ss_pred cccCCCeEEEeCCCcHHHHHHHHHHHhCCC---eEEEEEecCccccccccccccccccchhhhhhhhHh-----hccCCc
Confidence 356889999999999999999999999876 55666432111 111100 112357
Q ss_pred EEEEEccCCCCCCCCCHHHHHHHhcC--ccEEEEcCCCCCchh---h---HHHHHHHhchHHHHHHHHHHHcCCC-ceEE
Q 042694 167 LVPAVGNVCENNLGLEEDLADVIAKE--VDVIVNSAANTTFDE---R---YDIAIDINTRGPCRLMEFAKQCNKL-KLFV 237 (554)
Q Consensus 167 v~~v~GDl~~~~lGLs~~~~~~l~~~--vdiViH~AA~v~~~~---~---~~~~~~~Nv~gt~~ll~la~~~~~~-k~~v 237 (554)
+.++.||++++ +.+..++++ +|+|||+||...... + +...+++|+.||.+++++|++. +. ++||
T Consensus 79 v~~~~~Dl~d~------~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~~~V 151 (404)
T 1i24_A 79 IELYVGDICDF------EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLV 151 (404)
T ss_dssp CEEEESCTTSH------HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEE
T ss_pred eEEEECCCCCH------HHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh-CCCcEEE
Confidence 88999999987 778887776 999999999876421 1 2357899999999999999985 55 6999
Q ss_pred EEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEE
Q 042694 238 QVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVV 317 (554)
Q Consensus 238 ~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~ 317 (554)
|+||.++|+.....++|..+++.+....+.. +.+..+.. .|..+|..+|.++..+....|++++
T Consensus 152 ~~SS~~vyg~~~~~~~E~~~~~~~~~~~~~~----~~~~~~~~------------~Y~~sK~~~e~~~~~~~~~~gi~~~ 215 (404)
T 1i24_A 152 KLGTMGEYGTPNIDIEEGYITITHNGRTDTL----PYPKQASS------------FYHLSKVHDSHNIAFTCKAWGIRAT 215 (404)
T ss_dssp EECCGGGGCCCSSCBCSSEEEEEETTEEEEE----ECCCCCCS------------HHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred EeCcHHHhCCCCCCCCccccccccccccccc----cCCCCCCC------------hhHHHHHHHHHHHHHHHHhcCCeEE
Confidence 9999999986433333332211100000000 00011111 2333455566665544444489999
Q ss_pred EEccceeeecccCC---ccccccCCC-------CccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhccc
Q 042694 318 IIRPSVIESTCKEP---FSGWMEGNR-------MMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMI 387 (554)
Q Consensus 318 I~Rp~~V~g~~~~p---~~g~~~~~~-------~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~ 387 (554)
++||+.|||+...+ .++++.... ....++..+..|....++++++...++|||+|+|++++.++......
T Consensus 216 ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~ 295 (404)
T 1i24_A 216 DLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKA 295 (404)
T ss_dssp EEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCT
T ss_pred EEecceeeCCCCCccccccccccccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccC
Confidence 99999999987643 122222111 01111222223433335577788899999999999999988653211
Q ss_pred CCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 388 QKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 388 ~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
+ ..++||+++ .++++.|+++.+.+.
T Consensus 296 g--~~~~yni~~---~~~s~~e~~~~i~~~ 320 (404)
T 1i24_A 296 G--EFRVFNQFT---EQFSVNELASLVTKA 320 (404)
T ss_dssp T--CEEEEEECS---EEEEHHHHHHHHHHH
T ss_pred C--CceEEEECC---CCCcHHHHHHHHHHH
Confidence 1 127999987 379999999999997
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=238.50 Aligned_cols=253 Identities=11% Similarity=0.076 Sum_probs=175.6
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.+.+.++|||||||||||++|+++|++.|+ +|+++++... .. . . ++.++.+|++++ +.
T Consensus 8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~-------~~---~--l-~~~~~~~Dl~d~------~~ 65 (321)
T 2pk3_A 8 HHHGSMRALITGVAGFVGKYLANHLTEQNV---EVFGTSRNNE-------AK---L--P-NVEMISLDIMDS------QR 65 (321)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCTT-------CC---C--T-TEEEEECCTTCH------HH
T ss_pred cccCcceEEEECCCChHHHHHHHHHHHCCC---EEEEEecCCc-------cc---c--c-eeeEEECCCCCH------HH
Confidence 346778999999999999999999999876 5555543210 00 0 1 688999999987 77
Q ss_pred HHHHhcC--ccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCC
Q 042694 186 ADVIAKE--VDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMG 260 (554)
Q Consensus 186 ~~~l~~~--vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~ 260 (554)
+..++++ +|+|||+||..... +.++..+++|+.||.+++++|.++++.++|||+||.++++.... ...++++.
T Consensus 66 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~--~~~~~~E~ 143 (321)
T 2pk3_A 66 VKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILP--EESPVSEE 143 (321)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCG--GGCSBCTT
T ss_pred HHHHHHhcCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCC--CCCCCCCC
Confidence 8777765 99999999987643 35788999999999999999987646899999999999875310 11222222
Q ss_pred CCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCC
Q 042694 261 DSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNR 340 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~ 340 (554)
++. ++.. .|..+|..+|.++.......|++++|+||+.|||+...+ .+++.
T Consensus 144 ~~~-------------~~~~------------~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~-~~~~~--- 194 (321)
T 2pk3_A 144 NQL-------------RPMS------------PYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSL-GFVTQ--- 194 (321)
T ss_dssp SCC-------------BCCS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCT-TSHHH---
T ss_pred CCC-------------CCCC------------ccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCC-CchHH---
Confidence 211 1111 233345666666655444458999999999999976542 11111
Q ss_pred Cccceeeeecc---c--eeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHH
Q 042694 341 MMDPIILYYGK---G--QLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLH 415 (554)
Q Consensus 341 ~~~~i~~~~~~---G--~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~ 415 (554)
.++..+.. | ......++++...++++++|+|++++.++.... .+++||++++ .++++.|+++.+.
T Consensus 195 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~-----~g~~~~i~~~--~~~s~~e~~~~i~ 264 (321)
T 2pk3_A 195 ---DFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYGK-----TGDVYNVCSG--IGTRIQDVLDLLL 264 (321)
T ss_dssp ---HHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHCC-----TTCEEEESCS--CEEEHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCCC-----CCCeEEeCCC--CCeeHHHHHHHHH
Confidence 01111111 3 112234566778899999999999999887542 2479999998 7999999999999
Q ss_pred hHhccC
Q 042694 416 EHYSAS 421 (554)
Q Consensus 416 ~~~~~~ 421 (554)
+.+|..
T Consensus 265 ~~~g~~ 270 (321)
T 2pk3_A 265 AMANVK 270 (321)
T ss_dssp HHSSSC
T ss_pred HHhCCC
Confidence 998864
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=240.65 Aligned_cols=254 Identities=18% Similarity=0.213 Sum_probs=178.9
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCc--cEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRT-VPDV--GKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~-~~~V--~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
|+|||||||||||++|+++|++. ++.+ .+|+++++.. .+.+.. . ....++.++.+|++++
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~-~------~~~~~~~~~~~Dl~d~------ 67 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAP-V------DADPRLRFVHGDIRDA------ 67 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGG-G------TTCTTEEEEECCTTCH------
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhh-c------ccCCCeEEEEcCCCCH------
Confidence 47999999999999999999995 3331 2667665321 011100 0 0125789999999987
Q ss_pred HHHHHHhcCccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCC
Q 042694 184 DLADVIAKEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMG 260 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~ 260 (554)
+.+..++.++|+|||+||..... ++++..+++|+.||.+++++|.+. ++++|||+||.++|+... +.++++.
T Consensus 68 ~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~-~~~~~v~~SS~~vyg~~~----~~~~~E~ 142 (337)
T 1r6d_A 68 GLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQVYGSID----SGSWTES 142 (337)
T ss_dssp HHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGCCCS----SSCBCTT
T ss_pred HHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecchHHhCCCC----CCCCCCC
Confidence 88888889999999999987643 356788999999999999999985 789999999999988642 1222222
Q ss_pred CCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCC
Q 042694 261 DSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNR 340 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~ 340 (554)
.+. .+.. .|..+|..+|.+++.+....|++++|+||+.|||+...+ .+++.
T Consensus 143 ~~~-------------~~~~------------~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~-~~~~~--- 193 (337)
T 1r6d_A 143 SPL-------------EPNS------------PYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP-EKLIP--- 193 (337)
T ss_dssp SCC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT-TSHHH---
T ss_pred CCC-------------CCCC------------chHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCC-CChHH---
Confidence 110 1111 233445666666665544458999999999999976532 11111
Q ss_pred CccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhcc
Q 042694 341 MMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 341 ~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~ 420 (554)
.++.....|....++++++...++++++|+|++++.++.... .+++||++++ .++++.|+++.+.+.+|.
T Consensus 194 ---~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-----~g~~~~v~~~--~~~s~~e~~~~i~~~~g~ 263 (337)
T 1r6d_A 194 ---LFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR-----AGEIYHIGGG--LELTNRELTGILLDSLGA 263 (337)
T ss_dssp ---HHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-----TTCEEEECCC--CEEEHHHHHHHHHHHHTC
T ss_pred ---HHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhCCC-----CCCEEEeCCC--CCccHHHHHHHHHHHhCC
Confidence 111111123222334667778899999999999998876532 2579999998 789999999999999987
Q ss_pred C
Q 042694 421 S 421 (554)
Q Consensus 421 ~ 421 (554)
.
T Consensus 264 ~ 264 (337)
T 1r6d_A 264 D 264 (337)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=238.65 Aligned_cols=251 Identities=16% Similarity=0.179 Sum_probs=172.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|+++|++.++ +|+++++... ........++.++.+|+.++ + +....
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~---------~~~~~~~~~~~~~~~Dl~d~------~-~~~~~ 61 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY---EVVVVDNLSS---------GRREFVNPSAELHVRDLKDY------S-WGAGI 61 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEECCCSS---------CCGGGSCTTSEEECCCTTST------T-TTTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC---EEEEEeCCCC---------CchhhcCCCceEEECccccH------H-HHhhc
Confidence 5799999999999999999999876 4555543210 00111245788999999988 4 44555
Q ss_pred cCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccc
Q 042694 191 KEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKEN 267 (554)
Q Consensus 191 ~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~ 267 (554)
++ |+|||+||.... .+.+...+++|+.||.+++++|++. ++++|||+||.++|+...+ .++++..+.
T Consensus 62 ~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~vyg~~~~----~~~~e~~~~---- 131 (312)
T 3ko8_A 62 KG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVRTVVFASSSTVYGDADV----IPTPEEEPY---- 131 (312)
T ss_dssp CC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCSS----SSBCTTSCC----
T ss_pred CC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeCcHHHhCCCCC----CCCCCCCCC----
Confidence 56 999999996532 3457788999999999999999984 7899999999999987431 222222111
Q ss_pred ccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceee
Q 042694 268 FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIIL 347 (554)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~ 347 (554)
.+.. .|..+|..+|.+++.+....|++++|+||+.|||+...+ +++. .++.
T Consensus 132 ---------~p~~------------~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~--~~~~------~~~~ 182 (312)
T 3ko8_A 132 ---------KPIS------------VYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH--GVIY------DFIM 182 (312)
T ss_dssp ---------CCCS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCS--SHHH------HHHH
T ss_pred ---------CCCC------------hHHHHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCC--ChHH------HHHH
Confidence 1111 233445666766665554458999999999999976532 2211 1111
Q ss_pred eeccc-eeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 348 YYGKG-QLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 348 ~~~~G-~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
....+ ......++++...++++|+|+|++++.++..... ....+++||++++ .++++.|+++.+.+.+|..|
T Consensus 183 ~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~~ 255 (312)
T 3ko8_A 183 KLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEE-MDAPFLALNVGNV--DAVRVLDIAQIVAEVLGLRP 255 (312)
T ss_dssp HHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHH-SCCSEEEEEESCS--SCEEHHHHHHHHHHHHTCCC
T ss_pred HHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccc-cCCCCcEEEEcCC--CceeHHHHHHHHHHHhCCCC
Confidence 11111 1122346677889999999999999998876211 1123689999998 79999999999999999765
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=246.70 Aligned_cols=265 Identities=17% Similarity=0.140 Sum_probs=176.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhC-CCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTV-PDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|+|||||||||||++|+++|++.+ . +|+++++..... .+... ...++.++.+|++++ +.+
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~-~~~l~------~~~~v~~~~~Dl~d~------~~l 93 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVN---QVHVVDNLLSAE-KINVP------DHPAVRFSETSITDD------ALL 93 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCS---EEEEECCCTTCC-GGGSC------CCTTEEEECSCTTCH------HHH
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCc---eEEEEECCCCCc-hhhcc------CCCceEEEECCCCCH------HHH
Confidence 568899999999999999999999987 4 566665421100 00000 135789999999987 888
Q ss_pred HHHhcCccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc-eee--ccccCCC
Q 042694 187 DVIAKEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG-KVM--EKPFCMG 260 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~-~i~--E~~~~~~ 260 (554)
..+++++|+|||+||..... +++...+++|+.||.+++++|++.+++++|||+||.++|+...+ .++ |.....
T Consensus 94 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~- 172 (377)
T 2q1s_A 94 ASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIV- 172 (377)
T ss_dssp HHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCCC-
T ss_pred HHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccccccc-
Confidence 88889999999999987653 46778999999999999999987337899999999999986421 122 211000
Q ss_pred CCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccc-cccC-
Q 042694 261 DSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSG-WMEG- 338 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g-~~~~- 338 (554)
+. ..+.. .|..+|..+|.++..+....|++++|+||+.|||+...+.+| |...
T Consensus 173 -~~------------~~~~~------------~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~ 227 (377)
T 2q1s_A 173 -SL------------HNNDS------------PYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTP 227 (377)
T ss_dssp -CS------------SCCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSG
T ss_pred -cc------------cCCCC------------chHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCc
Confidence 00 01111 233345666666665544458999999999999986622111 1100
Q ss_pred ----CCCccceeeeeccceeeeeecCCCcccccchhhHHHHH-HHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHH
Q 042694 339 ----NRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNA-TLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARL 413 (554)
Q Consensus 339 ----~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~a-ii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~ 413 (554)
......++..+..|....++++++...++++|||+|++ ++.++.... .+ +||++++ +++++.|+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~-----~g-~~~i~~~--~~~s~~e~~~~ 299 (377)
T 2q1s_A 228 ATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTP-----GG-VYNIASG--KETSIADLATK 299 (377)
T ss_dssp GGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHHHHHHHHHHHHHCCT-----TE-EEECCCC--CCEEHHHHHHH
T ss_pred ccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHHhcCC-----CC-eEEecCC--CceeHHHHHHH
Confidence 00111111112233322344667788999999999999 888776421 34 9999998 79999999999
Q ss_pred HHhHhccCC
Q 042694 414 LHEHYSASP 422 (554)
Q Consensus 414 ~~~~~~~~p 422 (554)
+.+.+|..+
T Consensus 300 i~~~~g~~~ 308 (377)
T 2q1s_A 300 INEITGNNT 308 (377)
T ss_dssp HHHHHTCCS
T ss_pred HHHHhCCCC
Confidence 999998754
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=241.24 Aligned_cols=261 Identities=18% Similarity=0.214 Sum_probs=178.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|||||||||||++|+++|++.++.. +|+++++.......+. .......++.++.+|++++ +.+..+
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~Dl~d~------~~~~~~ 72 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLDKLTYAGNKAN----LEAILGDRVELVVGDIADA------ELVDKL 72 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTC-EEEEEECCCTTCCGGG----TGGGCSSSEEEEECCTTCH------HHHHHH
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCC-EEEEEeCCCCCCChhH----HhhhccCCeEEEECCCCCH------HHHHHH
Confidence 5789999999999999999999984332 5666653210000000 0111125789999999987 889999
Q ss_pred hcCccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccce--------eeccccC
Q 042694 190 AKEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGK--------VMEKPFC 258 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~--------i~E~~~~ 258 (554)
++++|+|||+||..... ++++..+++|+.||.+++++|.+. +. +|||+||.++|+..... ..+.+++
T Consensus 73 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~ 150 (348)
T 1oc2_A 73 AAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-DI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFT 150 (348)
T ss_dssp HTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBC
T ss_pred hhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHh-CC-eEEEecccceeCCCcccccccccccccCCCcC
Confidence 99999999999987643 355788999999999999999985 56 99999999998864210 0001222
Q ss_pred CCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC
Q 042694 259 MGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG 338 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~ 338 (554)
+.++ .++.. .|..+|..+|.++..+....|++++|+||+.|||+...+ .+++.
T Consensus 151 E~~~-------------~~~~~------------~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~-~~~~~- 203 (348)
T 1oc2_A 151 AETN-------------YNPSS------------PYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI-EKFIP- 203 (348)
T ss_dssp TTSC-------------CCCCS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCT-TSHHH-
T ss_pred CCCC-------------CCCCC------------ccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCc-cchHH-
Confidence 1111 01111 233345666666665544458999999999999976532 11111
Q ss_pred CCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHh
Q 042694 339 NRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHY 418 (554)
Q Consensus 339 ~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~ 418 (554)
.++..+..|....++++++...++++++|+|++++.++.... .+++||++++ .++++.|+++.+.+.+
T Consensus 204 -----~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~-----~g~~~~i~~~--~~~s~~e~~~~i~~~~ 271 (348)
T 1oc2_A 204 -----RQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGR-----MGETYLIGAD--GEKNNKEVLELILEKM 271 (348)
T ss_dssp -----HHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCC-----TTCEEEECCS--CEEEHHHHHHHHHHHT
T ss_pred -----HHHHHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCCC-----CCCeEEeCCC--CCCCHHHHHHHHHHHh
Confidence 111111123222344667778899999999999998886432 3579999998 7999999999999999
Q ss_pred ccCC
Q 042694 419 SASP 422 (554)
Q Consensus 419 ~~~p 422 (554)
|..+
T Consensus 272 g~~~ 275 (348)
T 1oc2_A 272 GQPK 275 (348)
T ss_dssp TCCT
T ss_pred CCCc
Confidence 8754
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-27 Score=237.56 Aligned_cols=248 Identities=17% Similarity=0.191 Sum_probs=174.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
||+|||||||||||++|+++|++.+ . .+.+.+... . .......++.++.+|+.+. ++..+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~--~v~~~~~~~--------~--~~~~~~~~~~~~~~Dl~~~-------~~~~~ 60 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-E--IVVIDNLSS--------G--NEEFVNEAARLVKADLAAD-------DIKDY 60 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-C--EEEECCCSS--------C--CGGGSCTTEEEECCCTTTS-------CCHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-C--EEEEEcCCC--------C--ChhhcCCCcEEEECcCChH-------HHHHH
Confidence 4689999999999999999999987 3 233322110 0 0111245788999999853 34556
Q ss_pred hcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccc
Q 042694 190 AKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~ 266 (554)
++++|+|||+||.... .+.++..+++|+.||.+++++|++. ++++|||+||.++|+... ..++++..+.
T Consensus 61 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~vyg~~~----~~~~~E~~~~--- 132 (313)
T 3ehe_A 61 LKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKA-GVSRIVFTSTSTVYGEAK----VIPTPEDYPT--- 132 (313)
T ss_dssp HTTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGGCSCS----SSSBCTTSCC---
T ss_pred hcCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCchHHhCcCC----CCCCCCCCCC---
Confidence 6799999999996533 3567889999999999999999984 789999999999998643 1222222111
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
.+.. .|..+|..+|.+++.+....|++++|+||+.|||+...+ +++.. ++
T Consensus 133 ----------~~~~------------~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~--~~~~~------~~ 182 (313)
T 3ehe_A 133 ----------HPIS------------LYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTH--GVIYD------FI 182 (313)
T ss_dssp ----------CCCS------------HHHHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCC--SHHHH------HH
T ss_pred ----------CCCC------------HHHHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCc--ChHHH------HH
Confidence 1111 233445666777666655569999999999999976542 22211 11
Q ss_pred eeeccc-eeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 347 LYYGKG-QLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 347 ~~~~~G-~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
.....+ ......++++...++++|||+|++++.++.. . ..+++||++++ +++++.|+++.+.+.+|..|
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~-~----~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~~ 252 (313)
T 3ehe_A 183 MKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRG-D----ERVNIFNIGSE--DQIKVKRIAEIVCEELGLSP 252 (313)
T ss_dssp HHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTC-C----SSEEEEECCCS--CCEEHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhcc-C----CCCceEEECCC--CCeeHHHHHHHHHHHhCCCC
Confidence 111112 1223457778889999999999999988762 1 23589999998 79999999999999999764
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=235.32 Aligned_cols=262 Identities=13% Similarity=0.139 Sum_probs=175.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc------------hhHHHHHHHcCCchhhhccCcEEEEEccCCCC
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA------------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCEN 177 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~------------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~ 177 (554)
+|+|||||||||||++|+++|++.+++| +++++ ...+.+... ...++.++.+|++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V---~~~~r~~~~~r~~~~~~~~~~~l~~~--------~~~~~~~~~~D~~~~ 70 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLP---VVIDNFHNAFRGGGSLPESLRRVQEL--------TGRSVEFEEMDILDQ 70 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCE---EEEECSSSSCBCSSSSBHHHHHHHHH--------HTCCCEEEECCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEE---EEEecCCcccccccccHHHHHHHHhc--------cCCceEEEECCCCCH
Confidence 4789999999999999999999988654 44432 111222211 124688899999987
Q ss_pred CCCCCHHHHHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccccee
Q 042694 178 NLGLEEDLADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKV 252 (554)
Q Consensus 178 ~lGLs~~~~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i 252 (554)
+.+..+++ ++|+|||+||..... +.++..+++|+.||.+++++|++. ++++|||+||.++++...
T Consensus 71 ------~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g~~~--- 140 (348)
T 1ek6_A 71 ------GALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSATVYGNPQ--- 140 (348)
T ss_dssp ------HHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGGCSCS---
T ss_pred ------HHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh-CCCEEEEECcHHHhCCCC---
Confidence 77888877 899999999987642 456788999999999999999984 789999999999987632
Q ss_pred eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc-CCCcEEEEccceeeecccCC
Q 042694 253 MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER-GDIPVVIIRPSVIESTCKEP 331 (554)
Q Consensus 253 ~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~-~glp~~I~Rp~~V~g~~~~p 331 (554)
..++++.++.. +... .|..+|..+|.++..+... .+++++|+||+.|||+....
T Consensus 141 -~~~~~E~~~~~------------p~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g 195 (348)
T 1ek6_A 141 -YLPLDEAHPTG------------GCTN------------PYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASG 195 (348)
T ss_dssp -SSSBCTTSCCC------------CCSS------------HHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTS
T ss_pred -CCCcCCCCCCC------------CCCC------------chHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCccc
Confidence 12222222110 1011 2333456666666554433 24999999999999985422
Q ss_pred ccccccCC--CCccceeeee--ccceeeeeec------CCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCC
Q 042694 332 FSGWMEGN--RMMDPIILYY--GKGQLTGFLV------DPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSV 401 (554)
Q Consensus 332 ~~g~~~~~--~~~~~i~~~~--~~G~~~~~~~------~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~ 401 (554)
..|..... ....+.+... +.+....+++ +++...++|+|||+|++++.++..... ...+++||++++
T Consensus 196 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~--~~g~~~~ni~~~- 272 (348)
T 1ek6_A 196 CIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKE--QCGCRIYNLGTG- 272 (348)
T ss_dssp SCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTT--TCCEEEEEECCS-
T ss_pred ccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCceEEeeEEHHHHHHHHHHHHhcccc--cCCceEEEeCCC-
Confidence 22211100 0011111111 1222112223 456788999999999999998875421 111379999988
Q ss_pred CCcccHHHHHHHHHhHhccC
Q 042694 402 VNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 402 ~~~it~~e~~~~~~~~~~~~ 421 (554)
.++++.|+++.+.+.+|.+
T Consensus 273 -~~~s~~e~~~~i~~~~g~~ 291 (348)
T 1ek6_A 273 -TGYSVLQMVQAMEKASGKK 291 (348)
T ss_dssp -CCEEHHHHHHHHHHHHCSC
T ss_pred -CCccHHHHHHHHHHHhCCC
Confidence 7899999999999999865
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=241.59 Aligned_cols=275 Identities=16% Similarity=0.139 Sum_probs=178.0
Q ss_pred CcEEEEecccccccHHHHHHHH-hhCCCccEEEEEcchh-----------HHHHHHHcCCchhhhccCc---EEEEEccC
Q 042694 110 AKNFFVTGATGFLAKVLIEKIL-RTVPDVGKIFIINAEL-----------FKCLKQTYGKSYQAFMLSK---LVPAVGNV 174 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL-~~~~~V~~i~~~~~~~-----------~~~l~~~~~~~~~~~~~~k---v~~v~GDl 174 (554)
+|+|||||||||||++|+++|+ +.++ +|+++++.. .+.+.+............+ +.++.+|+
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 78 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNH---SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDV 78 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCC---EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCC---EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCC
Confidence 4689999999999999999999 8775 556554321 2233211100000000123 88999999
Q ss_pred CCCCCCCCHHHHHHHhc--C-ccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccc
Q 042694 175 CENNLGLEEDLADVIAK--E-VDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 175 ~~~~lGLs~~~~~~l~~--~-vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~ 248 (554)
+++ +.+..+++ + +|+|||+||..... ++++..+++|+.||.+++++|++. ++++|||+||.++++..
T Consensus 79 ~d~------~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~iv~~SS~~v~g~~ 151 (397)
T 1gy8_A 79 RNE------DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFSSSAAIFGNP 151 (397)
T ss_dssp TCH------HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGTBSC
T ss_pred CCH------HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh-CCCEEEEECCHHHhCCC
Confidence 987 77777776 5 99999999987653 467789999999999999999984 78999999999998754
Q ss_pred cce-e--eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 249 RGK-V--MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~~-i--~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
... . +..++++.++. .+.. .|..+|..+|.++..+....|++++|+||+.||
T Consensus 152 ~~~~~~~~~~~~~E~~~~-------------~p~~------------~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~ 206 (397)
T 1gy8_A 152 TMGSVSTNAEPIDINAKK-------------SPES------------PYGESKLIAERMIRDCAEAYGIKGICLRYFNAC 206 (397)
T ss_dssp CC-----CCCCBCTTSCC-------------BCSS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEE
T ss_pred CcccccccccCcCccCCC-------------CCCC------------chHHHHHHHHHHHHHHHHHHCCcEEEEecccee
Confidence 210 0 01122221110 1111 233445666666665544448999999999999
Q ss_pred ecccCCccccccC-CCCccceee-----eeccce------------eeeeec------CCCcccccchhhHHHHHHHHHH
Q 042694 326 STCKEPFSGWMEG-NRMMDPIIL-----YYGKGQ------------LTGFLV------DPNGILDVVPADMVVNATLAAI 381 (554)
Q Consensus 326 g~~~~p~~g~~~~-~~~~~~i~~-----~~~~G~------------~~~~~~------~~~~~~d~vpVD~va~aii~~~ 381 (554)
|+...+..|.... .....+.+. .+..|. ...+++ +++...++|||||||++++.++
T Consensus 207 G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l 286 (397)
T 1gy8_A 207 GAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILAL 286 (397)
T ss_dssp CCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHH
T ss_pred CCCccccccccccchhHHHHHHHHHHHHHHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHH
Confidence 9865433222111 001111111 111121 112223 5677899999999999999988
Q ss_pred HHhcccC-CCCC---eEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 382 AQHGMIQ-KPDI---NVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 382 ~~~~~~~-~~~~---~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
......+ .... ++||++++ +++++.|+++.+.+.+|..
T Consensus 287 ~~~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~ 328 (397)
T 1gy8_A 287 DYVEKLGPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTGHP 328 (397)
T ss_dssp HHHHTCCTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHCCC
T ss_pred hcccccccccccCCCcEEEeCCC--CcccHHHHHHHHHHHhCCC
Confidence 6533211 0013 79999988 7899999999999999864
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=240.83 Aligned_cols=260 Identities=13% Similarity=0.008 Sum_probs=179.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|+|||||||||||++|+++|++.++ +|+++++.... .. .....++.++.+|++++ +.+..
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~-----~~----~~~~~~v~~~~~Dl~d~------~~~~~ 89 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGH---YVIASDWKKNE-----HM----TEDMFCDEFHLVDLRVM------ENCLK 89 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCS-----SS----CGGGTCSEEEECCTTSH------HHHHH
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCC---eEEEEECCCcc-----ch----hhccCCceEEECCCCCH------HHHHH
Confidence 468999999999999999999999875 55655432100 00 01134788899999987 88888
Q ss_pred HhcCccEEEEcCCCCCc----hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccccee-eccccCCCCCc
Q 042694 189 IAKEVDVIVNSAANTTF----DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKV-MEKPFCMGDSI 263 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i-~E~~~~~~~~~ 263 (554)
+++++|+|||+||.... .++++..+++|+.||.+++++|++. ++++|||+||.++++...+.. +..++++.+.
T Consensus 90 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~- 167 (379)
T 2c5a_A 90 VTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQLETTNVSLKESDA- 167 (379)
T ss_dssp HHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEGGGSCGGGSSSSSSCEECGGGG-
T ss_pred HhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeehheeCCCCCCCccCCCcCcccC-
Confidence 88999999999998764 3567889999999999999999984 789999999999988642100 0011111110
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
.+..+.. .|..+|..+|.++..+....|++++|+||+.|||+...+..++.. ...
T Consensus 168 ----------~~~~~~~------------~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~---~~~ 222 (379)
T 2c5a_A 168 ----------WPAEPQD------------AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREK---APA 222 (379)
T ss_dssp ----------SSBCCSS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCC---HHH
T ss_pred ----------CCCCCCC------------hhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCccccccc---HHH
Confidence 0001111 233345666666655544458999999999999986643222100 001
Q ss_pred ceeeeecccee-eeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 344 PIILYYGKGQL-TGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 344 ~i~~~~~~G~~-~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
.++..+..|.. ..++++++...++++|+|+|++++.++... .+++||++++ +++++.|+++.+.+.+|..
T Consensus 223 ~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~------~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~ 293 (379)
T 2c5a_A 223 AFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD------FREPVNIGSD--EMVSMNEMAEMVLSFEEKK 293 (379)
T ss_dssp HHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS------CCSCEEECCC--CCEEHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhcc------CCCeEEeCCC--CccCHHHHHHHHHHHhCCC
Confidence 11111112211 123466777899999999999999987643 2468999998 7999999999999999865
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-27 Score=238.52 Aligned_cols=270 Identities=16% Similarity=0.185 Sum_probs=176.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHH-HHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFK-CLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~-~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+|+|||||||||||++|+++|++.++ +|+++++ .... .+.... ...++.++.+|++++ +.
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~l~-------~~~~~~~~~~Dl~d~------~~ 64 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGI---DLIVFDNLSRKGATDNLHWLS-------SLGNFEFVHGDIRNK------ND 64 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSTTHHHHHHHHH-------TTCCCEEEECCTTCH------HH
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCC---EEEEEeCCCccCchhhhhhhc-------cCCceEEEEcCCCCH------HH
Confidence 46899999999999999999999876 4555532 1111 111111 123688899999987 88
Q ss_pred HHHHhcC--ccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCc-eEEEEeeceecccccc-eeeccc--
Q 042694 186 ADVIAKE--VDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLK-LFVQVSTAYVNGQRRG-KVMEKP-- 256 (554)
Q Consensus 186 ~~~l~~~--vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~v~vST~~v~~~~~~-~i~E~~-- 256 (554)
++.++++ +|+|||+||..... ++++..+++|+.||.+++++|++. +.+ +|||+||.++|+...+ ...|..
T Consensus 65 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~iv~~SS~~v~g~~~~~~~~e~~~~ 143 (347)
T 1orr_A 65 VTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLEQYKYNETETR 143 (347)
T ss_dssp HHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCTTSCEEECSSC
T ss_pred HHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEeccHHHhCCCCcCCccccccc
Confidence 8888877 99999999987652 467788999999999999999985 565 9999999999986421 111110
Q ss_pred cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc--cc
Q 042694 257 FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF--SG 334 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~--~g 334 (554)
+..... +....+..+ ..+. . .|..+|+.+|.++..+....|++++|+||+.|||+...+. .+
T Consensus 144 ~~~~~~--~~~~~e~~~--~~~~------~------~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~ 207 (347)
T 1orr_A 144 YTCVDK--PNGYDESTQ--LDFH------S------PYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQG 207 (347)
T ss_dssp EEETTC--TTCBCTTSC--CCCC------H------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBC
T ss_pred cccccc--ccCccccCC--CCCC------C------chHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCc
Confidence 000000 000000000 0111 1 2334456666666655444589999999999999865321 11
Q ss_pred cccCCCCccceeeeeccce-----eeeeecCCCcccccchhhHHHHHHHHHHHH-hcccCCCCCeEEEeeCCCCCcccHH
Q 042694 335 WMEGNRMMDPIILYYGKGQ-----LTGFLVDPNGILDVVPADMVVNATLAAIAQ-HGMIQKPDINVYQIASSVVNPLVFQ 408 (554)
Q Consensus 335 ~~~~~~~~~~i~~~~~~G~-----~~~~~~~~~~~~d~vpVD~va~aii~~~~~-~~~~~~~~~~vyn~~~~~~~~it~~ 408 (554)
++. .++.....|. ....+++++...++++++|+|++++.++.. ... .+++||++++..+++++.
T Consensus 208 ~~~------~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~----~g~~~~v~~~~~~~~s~~ 277 (347)
T 1orr_A 208 WVG------WFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKI----RGNAFNIGGTIVNSLSLL 277 (347)
T ss_dssp HHH------HHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHH----TTCEEEESSCGGGEEEHH
T ss_pred HHH------HHHHHHHhCcccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhccccC----CCCEEEeCCCCCCCccHH
Confidence 111 1111111222 123346778889999999999999988764 122 247999998732369999
Q ss_pred HHHHHHHhHhccCC
Q 042694 409 DLARLLHEHYSASP 422 (554)
Q Consensus 409 e~~~~~~~~~~~~p 422 (554)
|+++.+.+.+|..+
T Consensus 278 e~~~~i~~~~g~~~ 291 (347)
T 1orr_A 278 ELFKLLEDYCNIDM 291 (347)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999998753
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=236.37 Aligned_cols=269 Identities=15% Similarity=0.179 Sum_probs=178.5
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
|+|||||||||||++|+++|++. ++ +|+++++..- .+.. . ....++.++.||++++ ++.++.+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~-~~~~-~------~~~~~~~~~~~D~~~~-----~~~~~~~ 64 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY---EVYGLDIGSD-AISR-F------LNHPHFHFVEGDISIH-----SEWIEYH 64 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC---EEEEEESCCG-GGGG-G------TTCTTEEEEECCTTTC-----SHHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC---EEEEEeCCcc-hHHH-h------hcCCCeEEEeccccCc-----HHHHHhh
Confidence 57999999999999999999987 54 5565543210 0000 0 0134789999999975 2567777
Q ss_pred hcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccc
Q 042694 190 AKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~ 266 (554)
.+++|+|||+||.... ..++...+++|+.|+.+++++|++. + ++|||+||.++++...+ .++.+.++..+.
T Consensus 65 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~v~~SS~~v~g~~~~----~~~~e~~~~~~~ 138 (345)
T 2bll_A 65 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSEVYGMCSD----KYFDEDHSNLIV 138 (345)
T ss_dssp HHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGGGGBTCCC----SSBCTTTCCCBC
T ss_pred ccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecHHHcCCCCC----CCcCCccccccc
Confidence 7899999999998763 3467788999999999999999985 5 89999999999986421 122222110000
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC-CCCccce
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG-NRMMDPI 345 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~-~~~~~~i 345 (554)
.+.... .. .|..+|..+|.++..+....|++++|+||+.|||+...+...+... ......+
T Consensus 139 ---------~~~~~~---~~------~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~ 200 (345)
T 2bll_A 139 ---------GPVNKP---RW------IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQL 200 (345)
T ss_dssp ---------CCTTCG---GG------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHH
T ss_pred ---------CcccCc---cc------ccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHH
Confidence 000000 01 2333456666666555444589999999999999876432111100 0001111
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCC-cccHHHHHHHHHhHhccCCC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVN-PLVFQDLARLLHEHYSASPC 423 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~-~it~~e~~~~~~~~~~~~p~ 423 (554)
+..+..|....++++++...++++|+|+|++++.++..... ...+++||++++ . ++|+.|+++.+.+.+|..+.
T Consensus 201 ~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~--~~~g~~~~i~~~--~~~~s~~e~~~~i~~~~g~~~~ 275 (345)
T 2bll_A 201 ILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGN--RCDGEIINIGNP--ENEASIEELGEMLLASFEKHPL 275 (345)
T ss_dssp HHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGG--TTTTEEEEECCT--TSEEEHHHHHHHHHHHHHTCTT
T ss_pred HHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhhccc--cCCCceEEeCCC--CCCCCHHHHHHHHHHHhCCCcc
Confidence 11122333333456677888999999999999998865321 123589999987 5 89999999999999987643
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=235.89 Aligned_cols=248 Identities=16% Similarity=0.148 Sum_probs=166.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.+|+|||||||||||++|+++|+++++ +|+++++..- .. ......++.++.+|+.++ +.+..
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~-~~--------~~l~~~~~~~~~~Dl~d~------~~~~~ 73 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGH---DLVLIHRPSS-QI--------QRLAYLEPECRVAEMLDH------AGLER 73 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECTTS-CG--------GGGGGGCCEEEECCTTCH------HHHHH
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEecChH-hh--------hhhccCCeEEEEecCCCH------HHHHH
Confidence 346899999999999999999999876 4555543210 00 001113688999999987 88888
Q ss_pred HhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccc
Q 042694 189 IAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKEN 267 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~ 267 (554)
+++++|+|||+||.... .++++..+++|+.|+.+++++|++. ++++|||+||.++++...+ .+.+ .+.++..|..
T Consensus 74 ~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~--~~~~-~E~~~~~p~~ 149 (342)
T 2x4g_A 74 ALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQA-RVPRILYVGSAYAMPRHPQ--GLPG-HEGLFYDSLP 149 (342)
T ss_dssp HTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHH-TCSCEEEECCGGGSCCCTT--SSCB-CTTCCCSSCC
T ss_pred HHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCHHhhCcCCC--CCCC-CCCCCCCccc
Confidence 88999999999997654 3567788999999999999999985 7899999999999886432 0011 1111110000
Q ss_pred ccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc-CC-ccccccCCCCccce
Q 042694 268 FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK-EP-FSGWMEGNRMMDPI 345 (554)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~-~p-~~g~~~~~~~~~~i 345 (554)
.... .|..+|+.+|.+++.+... |++++|+||+.|||+.. .+ ++.++
T Consensus 150 ---------~~~~------------~Y~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~~~~~~--------- 198 (342)
T 2x4g_A 150 ---------SGKS------------SYVLCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPTTGRVI--------- 198 (342)
T ss_dssp ---------TTSC------------HHHHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCSTTHHH---------
T ss_pred ---------cccC------------hHHHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCccccHHHHH---------
Confidence 0011 2334456666666655445 89999999999999765 21 11111
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
..+..|....+ ++...++++++|+|++++.++..... +++||++++ + +++.|+++.+.+.+|..
T Consensus 199 -~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~~~~~-----g~~~~v~~~--~-~s~~e~~~~i~~~~g~~ 262 (342)
T 2x4g_A 199 -TAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALERGRI-----GERYLLTGH--N-LEMADLTRRIAELLGQP 262 (342)
T ss_dssp -HHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHHHSCT-----TCEEEECCE--E-EEHHHHHHHHHHHHTCC
T ss_pred -HHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHhCCCC-----CceEEEcCC--c-ccHHHHHHHHHHHhCCC
Confidence 11122322222 45668999999999999998875332 579999998 6 99999999999999864
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-27 Score=238.29 Aligned_cols=255 Identities=15% Similarity=0.043 Sum_probs=176.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.+++|||||||||||++|+++|++.++ +|+++++.. ..++.... ...++.++.+|++++ +
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~d~------~ 76 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGY---RVHGLVARRSSDTRWRLRELG-------IEGDIQYEDGDMADA------C 76 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSSCCCHHHHHTT-------CGGGEEEEECCTTCH------H
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCCccccccchhhcc-------ccCceEEEECCCCCH------H
Confidence 468999999999999999999999875 455554321 11221110 124788999999987 7
Q ss_pred HHHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCC-ceEEEEeeceecccccceeeccccC
Q 042694 185 LADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKL-KLFVQVSTAYVNGQRRGKVMEKPFC 258 (554)
Q Consensus 185 ~~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~-k~~v~vST~~v~~~~~~~i~E~~~~ 258 (554)
.+..+++ ++|+|||+||..... .++...+++|+.||.+++++|++. ++ ++|||+||.++|+...+ .+++
T Consensus 77 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS~~v~g~~~~----~~~~ 151 (335)
T 1rpn_A 77 SVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQASTSEMFGLIQA----ERQD 151 (335)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEEGGGGCSCSS----SSBC
T ss_pred HHHHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeCHHHhCCCCC----CCCC
Confidence 7777776 479999999987653 467788999999999999999985 65 89999999999986431 1222
Q ss_pred CCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC
Q 042694 259 MGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG 338 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~ 338 (554)
+.++. .+.. .|..+|..+|.++..+....+++++|+||+.+||+...+ ++...
T Consensus 152 E~~~~-------------~p~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~--~~~~~ 204 (335)
T 1rpn_A 152 ENTPF-------------YPRS------------PYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGI--EFVTR 204 (335)
T ss_dssp TTSCC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCT--TSHHH
T ss_pred cccCC-------------CCCC------------hhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCC--CcchH
Confidence 22211 1111 233345666666665544458999999999999976431 11100
Q ss_pred CCCccceeeeecccee-eeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 339 NRMMDPIILYYGKGQL-TGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 339 ~~~~~~i~~~~~~G~~-~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
....++..+..|.. ....++++...++++|||+|++++.++.... .++||++++ .++++.|+++.+.+.
T Consensus 205 --~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~------~~~~ni~~~--~~~s~~e~~~~i~~~ 274 (335)
T 1rpn_A 205 --KVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK------ADDYVVATG--VTTTVRDMCQIAFEH 274 (335)
T ss_dssp --HHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS------CCCEEECCS--CEEEHHHHHHHHHHT
T ss_pred --HHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHhcCC------CCEEEEeCC--CCccHHHHHHHHHHH
Confidence 01111111223322 2234677888999999999999999876422 369999998 789999999999999
Q ss_pred hccC
Q 042694 418 YSAS 421 (554)
Q Consensus 418 ~~~~ 421 (554)
+|..
T Consensus 275 ~g~~ 278 (335)
T 1rpn_A 275 VGLD 278 (335)
T ss_dssp TTCC
T ss_pred hCCC
Confidence 8864
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-27 Score=246.02 Aligned_cols=262 Identities=17% Similarity=0.175 Sum_probs=169.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--h---hHHHHHHHcCCc----hhhhccCcEEEEEccCCC-CC
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--E---LFKCLKQTYGKS----YQAFMLSKLVPAVGNVCE-NN 178 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~---~~~~l~~~~~~~----~~~~~~~kv~~v~GDl~~-~~ 178 (554)
.+++|||||||||||++|+++|++.+. +|+++.+ . ...++.+..... .......++.++.||+++ +.
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 144 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGYSH---RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD 144 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTTEE---EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcCCC---EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence 467999999999999999999987654 5666542 2 233443332111 112234689999999998 44
Q ss_pred CCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccc-ceeecccc
Q 042694 179 LGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRR-GKVMEKPF 257 (554)
Q Consensus 179 lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~-~~i~E~~~ 257 (554)
++ ...++|+|||+||.++...++...+++|+.||.+++++|.+ +.++|||+||.++ |... ....+.++
T Consensus 145 l~--------~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~SS~~~-G~~~~~~~~~~~~ 213 (427)
T 4f6c_A 145 VV--------LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDTEDVTF 213 (427)
T ss_dssp CC--------CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH--TTCEEEEEEEGGG-GSEECSSCSCCEE
T ss_pred CC--------CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEECchHh-CCCccCCCCCccc
Confidence 44 55799999999999988888999999999999999999998 6789999999999 5421 01122233
Q ss_pred CCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcccccc
Q 042694 258 CMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWME 337 (554)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~ 337 (554)
++.+...+. .+.. .|..+|+.+|.++..+.+ .|++++|+|||.|+|+...+. +..
T Consensus 214 ~E~~~~~~~----------~~~~------------~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~--~~~ 268 (427)
T 4f6c_A 214 SEADVYKGQ----------LLTS------------PYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRW--HMR 268 (427)
T ss_dssp CTTCSCSSC----------CCCS------------HHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCC--CCT
T ss_pred cccccccCC----------CCCC------------chHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCc--ccc
Confidence 332221000 0111 344456777777666543 589999999999999876431 111
Q ss_pred CC--CCccceeeee-ccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHH
Q 042694 338 GN--RMMDPIILYY-GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLL 414 (554)
Q Consensus 338 ~~--~~~~~i~~~~-~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~ 414 (554)
+. ..+..++... ..+.++. ++++...+++||||+|++++.++.... .+++||++++ ++++|.|+++.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~v~DvA~ai~~~~~~~~-----~g~~~~l~~~--~~~s~~el~~~i 339 (427)
T 4f6c_A 269 NIKTNRFSMVMNDLLQLDCIGV--SMAEMPVDFSFVDTTARQIVALAQVNT-----PQIIYHVLSP--NKMPVKSLLECV 339 (427)
T ss_dssp TGGGCHHHHHHHHHHHSSEEEH--HHHTCEECCEEHHHHHHHHHHHTTSCC-----CCSEEEESCS--CCEEHHHHHHHH
T ss_pred CcchHHHHHHHHHHHhcCCCCC--ccccceEEEeeHHHHHHHHHHHHcCCC-----CCCEEEecCC--CCCcHHHHHHHH
Confidence 10 0011111111 1222321 235778899999999999999876532 3589999998 799999999999
Q ss_pred HhHhc
Q 042694 415 HEHYS 419 (554)
Q Consensus 415 ~~~~~ 419 (554)
.+ ++
T Consensus 340 ~~-~g 343 (427)
T 4f6c_A 340 KR-KE 343 (427)
T ss_dssp HS-SC
T ss_pred HH-cC
Confidence 98 44
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=233.04 Aligned_cols=249 Identities=8% Similarity=0.075 Sum_probs=171.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|||||||||||++|+++|++.++ +|+++.+. ..+|+.++ +.+..+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~---~v~~~~r~-----------------------~~~D~~d~------~~~~~~ 50 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGD---VELVLRTR-----------------------DELNLLDS------RAVHDF 50 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT---EEEECCCT-----------------------TTCCTTCH------HHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC---eEEEEecC-----------------------ccCCccCH------HHHHHH
Confidence 57899999999999999999998775 34444432 03688876 778888
Q ss_pred hc--CccEEEEcCCCCCc----hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccc-ceeeccccCCCCC
Q 042694 190 AK--EVDVIVNSAANTTF----DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRR-GKVMEKPFCMGDS 262 (554)
Q Consensus 190 ~~--~vdiViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~-~~i~E~~~~~~~~ 262 (554)
++ ++|+|||+||.... ..++..++++|+.||.+++++|++. ++++|||+||.++|+... ..++|...... +
T Consensus 51 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~-~ 128 (321)
T 1e6u_A 51 FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSCIYPKLAKQPMAESELLQG-T 128 (321)
T ss_dssp HHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGSCTTCCSSBCGGGTTSS-C
T ss_pred HHhcCCCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccHHHcCCCCCCCcCccccccC-C
Confidence 87 99999999998763 3467788999999999999999984 789999999999998642 12222211000 0
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCc
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMM 342 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~ 342 (554)
..+. .. .|..+|..+|.+++.+....+++++|+||+.|||+...+..... + ..
T Consensus 129 -------------~~p~-----~~------~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~-~--~~ 181 (321)
T 1e6u_A 129 -------------LEPT-----NE------PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNS-H--VI 181 (321)
T ss_dssp -------------CCGG-----GH------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCS-S--HH
T ss_pred -------------CCCC-----CC------ccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCC-c--cH
Confidence 0000 01 23334566677666554445899999999999998764321100 0 11
Q ss_pred cceeeeec----cc-eeeeeecCCCcccccchhhHHHHHHHHHHHHhccc----CCCCCeEEEeeCCCCCcccHHHHHHH
Q 042694 343 DPIILYYG----KG-QLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMI----QKPDINVYQIASSVVNPLVFQDLARL 413 (554)
Q Consensus 343 ~~i~~~~~----~G-~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~----~~~~~~vyn~~~~~~~~it~~e~~~~ 413 (554)
..++..+. .| ....++++++...++|+|||+|++++.++...... ....+++||++++ .++++.|+++.
T Consensus 182 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~ 259 (321)
T 1e6u_A 182 PALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTG--VDCTIRELAQT 259 (321)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCS--CCEEHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCC--CCccHHHHHHH
Confidence 11111111 12 11223467788899999999999999988653321 0012479999988 78999999999
Q ss_pred HHhHhccC
Q 042694 414 LHEHYSAS 421 (554)
Q Consensus 414 ~~~~~~~~ 421 (554)
+.+.+|..
T Consensus 260 i~~~~g~~ 267 (321)
T 1e6u_A 260 IAKVVGYK 267 (321)
T ss_dssp HHHHHTCC
T ss_pred HHHHhCCC
Confidence 99999865
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=234.09 Aligned_cols=253 Identities=13% Similarity=0.106 Sum_probs=172.8
Q ss_pred CcEEEEecccccccHHHHHHHHhh--CCCccEEEEEcchh-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRT--VPDVGKIFIINAEL-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~--~~~V~~i~~~~~~~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+|+|||||||||||++|+++|++. +++ |+++++.. -..+ ..++.++.+|++++ +.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~---V~~~~r~~~~~~~------------~~~~~~~~~D~~d~------~~~ 60 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTEN---VIASDIRKLNTDV------------VNSGPFEVVNALDF------NQI 60 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGG---EEEEESCCCSCHH------------HHSSCEEECCTTCH------HHH
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCE---EEEEcCCCccccc------------cCCCceEEecCCCH------HHH
Confidence 478999999999999999999998 654 44443211 0001 12456789999987 788
Q ss_pred HHHhc--CccEEEEcCCCCCc--hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCC
Q 042694 187 DVIAK--EVDVIVNSAANTTF--DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~v~~--~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
..+++ ++|+|||+||.... ..++...+++|+.||.+++++|++. ++++|||+||.++++...+ ..+..+..+
T Consensus 61 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~---~~~~~e~~~ 136 (312)
T 2yy7_A 61 EHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAK-KIKKIFWPSSIAVFGPTTP---KENTPQYTI 136 (312)
T ss_dssp HHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-SCSEEECCEEGGGCCTTSC---SSSBCSSCB
T ss_pred HHHHhhcCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHHhCCCCC---CCCccccCc
Confidence 88877 89999999998654 2467788999999999999999984 7899999999999986421 011111111
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCc
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMM 342 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~ 342 (554)
..+.. .|..+|..+|.+++.+....|++++++||+.|||+...|-.+..+. ..
T Consensus 137 -------------~~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~--~~ 189 (312)
T 2yy7_A 137 -------------MEPST------------VYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDY--AV 189 (312)
T ss_dssp -------------CCCCS------------HHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTH--HH
T ss_pred -------------CCCCc------------hhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhh--HH
Confidence 01111 2334456667766655544589999999999999765432211000 00
Q ss_pred cceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhc
Q 042694 343 DPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYS 419 (554)
Q Consensus 343 ~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~ 419 (554)
..+......|... .+++++...++++|+|+|++++.++..... ....+++||+++ .++++.|+++.+.+.++
T Consensus 190 ~~~~~~~~~~~~~-~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~~~~ni~~---~~~s~~e~~~~i~~~~~ 261 (312)
T 2yy7_A 190 DIFYKAIADKKYE-CFLSSETKMPMMYMDDAIDATINIMKAPVE-KIKIHSSYNLAA---MSFTPTEIANEIKKHIP 261 (312)
T ss_dssp HHHHHHHHTSEEE-ESSCTTCCEEEEEHHHHHHHHHHHHHSCGG-GCCCSSCEECCS---EEECHHHHHHHHHTTCT
T ss_pred HHHHHHHcCCCeE-EecCCCceeeeeeHHHHHHHHHHHHhCccc-ccccCceEEeCC---CccCHHHHHHHHHHHCC
Confidence 1111112234332 345677789999999999999998865332 101137999985 48999999999999887
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-26 Score=234.35 Aligned_cols=257 Identities=16% Similarity=0.192 Sum_probs=175.1
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
|+|||||||||||++|+++|++. +. +|+++++.. .+.+.+ . ....++.++.+|++++ +.
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~---~V~~~~r~~~~~~~~~~~~-~------~~~~~~~~~~~Dl~d~------~~ 64 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQD---TVVNIDKLTYAGNLESLSD-I------SESNRYNFEHADICDS------AE 64 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC---EEEEEECCCTTCCGGGGTT-T------TTCTTEEEEECCTTCH------HH
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCC---eEEEEecCCCCCchhhhhh-h------hcCCCeEEEECCCCCH------HH
Confidence 46999999999999999999997 44 566654321 111100 0 0134789999999987 88
Q ss_pred HHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHc-CCCc-------eEEEEeeceecccccc--
Q 042694 186 ADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQC-NKLK-------LFVQVSTAYVNGQRRG-- 250 (554)
Q Consensus 186 ~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~-~~~k-------~~v~vST~~v~~~~~~-- 250 (554)
+..+++ ++|+|||+||..... ++++..+++|+.||.+++++|.+. .+++ +|||+||.++++....
T Consensus 65 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~ 144 (361)
T 1kew_A 65 ITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPD 144 (361)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGG
T ss_pred HHHHHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccc
Confidence 888887 899999999987642 456788999999999999999873 2566 9999999999886421
Q ss_pred eeecc----ccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 251 KVMEK----PFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 251 ~i~E~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
...+. ++++..+ .++.. .|..+|..+|.++..+....|++++++||+.|||
T Consensus 145 ~~~~~~~~~~~~E~~~-------------~~~~~------------~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G 199 (361)
T 1kew_A 145 EVENSVTLPLFTETTA-------------YAPSS------------PYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYG 199 (361)
T ss_dssp GSCTTSCCCCBCTTSC-------------CCCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEES
T ss_pred cccccccCCCCCCCCC-------------CCCCC------------ccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeEC
Confidence 00000 1111111 01111 2333455666666554444589999999999999
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCccc
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLV 406 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it 406 (554)
+...+ .+++. .++..+..|....++++++...++++++|+|++++.++.... .+++||++++ .+++
T Consensus 200 ~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-----~g~~~~v~~~--~~~s 265 (361)
T 1kew_A 200 PYHFP-EKLIP------LVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGK-----AGETYNIGGH--NEKK 265 (361)
T ss_dssp TTCCT-TSHHH------HHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-----TTCEEEECCC--CEEE
T ss_pred CCCCc-ccHHH------HHHHHHHcCCCceEcCCCceeEeeEEHHHHHHHHHHHHhCCC-----CCCEEEecCC--Ceee
Confidence 76532 11111 111111122222234667778899999999999999886532 3579999998 7899
Q ss_pred HHHHHHHHHhHhccCC
Q 042694 407 FQDLARLLHEHYSASP 422 (554)
Q Consensus 407 ~~e~~~~~~~~~~~~p 422 (554)
+.|+++.+.+.+|..+
T Consensus 266 ~~e~~~~i~~~~g~~~ 281 (361)
T 1kew_A 266 NLDVVFTICDLLDEIV 281 (361)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCcC
Confidence 9999999999998753
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-26 Score=233.98 Aligned_cols=253 Identities=14% Similarity=0.142 Sum_probs=171.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhC-CCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTV-PDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|+|||||||||||++|+++|++.+ .+ |+++++..... ... ...++. +.+|+.++ +.+
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~---V~~~~r~~~~~---~~~------~~~~~~-~~~d~~~~------~~~ 104 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITD---ILVVDNLKDGT---KFV------NLVDLN-IADYMDKE------DFL 104 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCC---EEEEECCSSGG---GGG------GTTTSC-CSEEEEHH------HHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcE---EEEEecCCCcc---hhh------cccCce-EeeecCcH------HHH
Confidence 457899999999999999999999987 54 44444321000 000 011222 67898876 777
Q ss_pred HHHhc-----CccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCC
Q 042694 187 DVIAK-----EVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMG 260 (554)
Q Consensus 187 ~~l~~-----~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~ 260 (554)
+.+.+ ++|+|||+||.... ..+++..+++|+.||.+++++|++. ++ +|||+||.++++...+ .++++.
T Consensus 105 ~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~-~~-r~V~~SS~~v~g~~~~----~~~~E~ 178 (357)
T 2x6t_A 105 IQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTS----DFIESR 178 (357)
T ss_dssp HHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGGGGCSCSS----CCCSSG
T ss_pred HHHHhhcccCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcchHHhCCCCC----CCcCCc
Confidence 77776 59999999998664 3567889999999999999999985 67 9999999999876421 112211
Q ss_pred CCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCC
Q 042694 261 DSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNR 340 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~ 340 (554)
++. .+.. .|..+|..+|.+++.+....|++++++||+.|||+...+... ...
T Consensus 179 ~~~-------------~p~~------------~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~-~~~-- 230 (357)
T 2x6t_A 179 EYE-------------KPLN------------VFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGS-MAS-- 230 (357)
T ss_dssp GGC-------------CCSS------------HHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGG-GSC--
T ss_pred CCC-------------CCCC------------hhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcc-cch--
Confidence 110 1111 233446667777766655568999999999999986542110 000
Q ss_pred CccceeeeeccceeeeeecCCCc-ccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhc
Q 042694 341 MMDPIILYYGKGQLTGFLVDPNG-ILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYS 419 (554)
Q Consensus 341 ~~~~i~~~~~~G~~~~~~~~~~~-~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~ 419 (554)
....++..+..|....++++++. ..++++|+|+|++++.++.... +++||++++ .++++.|+++.+.+.+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~------~~~~~i~~~--~~~s~~e~~~~i~~~~g 302 (357)
T 2x6t_A 231 VAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV------SGIFNLGTG--RAESFQAVADATLAYHK 302 (357)
T ss_dssp HHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCC------CEEEEESCS--CCEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCC------CCeEEecCC--CcccHHHHHHHHHHHcC
Confidence 11111111122332233456666 7899999999999999886532 479999998 78999999999999998
Q ss_pred cC
Q 042694 420 AS 421 (554)
Q Consensus 420 ~~ 421 (554)
..
T Consensus 303 ~~ 304 (357)
T 2x6t_A 303 KG 304 (357)
T ss_dssp CC
T ss_pred CC
Confidence 75
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=225.75 Aligned_cols=261 Identities=15% Similarity=0.211 Sum_probs=170.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc------hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
|+|||||||||||++|+++|++.|++ |++++. ...+.+.+. ...++.++.+|++++ +
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~---V~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~------~ 63 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHD---VIILDNLCNSKRSVLPVIERL--------GGKHPTFVEGDIRNE------A 63 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCTTHHHHHHHH--------HTSCCEEEECCTTCH------H
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCE---EEEEecCCCcchhHHHHHHhh--------cCCcceEEEccCCCH------H
Confidence 47999999999999999999998864 444432 111222111 123678899999987 7
Q ss_pred HHHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCC
Q 042694 185 LADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 185 ~~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
.++.+.+ ++|+|||+||..... +.....+++|+.||.+++++|++. ++++|||+||.++++... ..++.+
T Consensus 64 ~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g~~~----~~~~~e 138 (338)
T 1udb_A 64 LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSATVYGDNP----KIPYVE 138 (338)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCC----SSSBCT
T ss_pred HHHHHhhccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEccHHHhCCCC----CCCcCc
Confidence 7777665 599999999986542 345678999999999999999884 788999999999987532 112222
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcC-CCcEEEEccceeeecccCCccccccC
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERG-DIPVVIIRPSVIESTCKEPFSGWMEG 338 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~-glp~~I~Rp~~V~g~~~~p~~g~~~~ 338 (554)
..+. .+... .|..+|..+|.++..+.... +++++|+||++|||+......|....
T Consensus 139 ~~~~------------~~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~ 194 (338)
T 1udb_A 139 SFPT------------GTPQS------------PYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194 (338)
T ss_dssp TSCC------------CCCSS------------HHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCC
T ss_pred ccCC------------CCCCC------------hHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccc
Confidence 1110 01111 23334556666655544333 79999999999999754222221110
Q ss_pred C--CCccceeeee--ccce-eeee-----ecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHH
Q 042694 339 N--RMMDPIILYY--GKGQ-LTGF-----LVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQ 408 (554)
Q Consensus 339 ~--~~~~~i~~~~--~~G~-~~~~-----~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~ 408 (554)
. ....+.+... +.+. +..+ .++++...++|+|+|+|++++.++..... ...+++||++++ +++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~--~~~~~~yni~~~--~~~s~~ 270 (338)
T 1udb_A 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLAN--KPGVHIYNLGAG--VGNSVL 270 (338)
T ss_dssp SSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTT--CCEEEEEEESCS--CCEEHH
T ss_pred cchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHHHHHHHHHHHHhhhhc--cCCCcEEEecCC--CceeHH
Confidence 0 0001111111 1111 1111 02456778999999999999988765321 111379999988 789999
Q ss_pred HHHHHHHhHhccC
Q 042694 409 DLARLLHEHYSAS 421 (554)
Q Consensus 409 e~~~~~~~~~~~~ 421 (554)
|+++.+.+.+|.+
T Consensus 271 e~~~~i~~~~g~~ 283 (338)
T 1udb_A 271 DVVNAFSKACGKP 283 (338)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998864
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=229.70 Aligned_cols=240 Identities=13% Similarity=0.150 Sum_probs=172.2
Q ss_pred ccchhhhccCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCC
Q 042694 101 GIGIVKFLKAKNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCEN 177 (554)
Q Consensus 101 ~~~i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~ 177 (554)
.+++.+++++|+|||||||||+|++|+++|++. ++ .+|+++++. ....+..... ..++.++.||++++
T Consensus 12 ~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~--~~V~~~~r~~~~~~~~~~~~~-------~~~v~~~~~Dl~d~ 82 (344)
T 2gn4_A 12 MPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNA--KKIIVYSRDELKQSEMAMEFN-------DPRMRFFIGDVRDL 82 (344)
T ss_dssp ----CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCC--SEEEEEESCHHHHHHHHHHHC-------CTTEEEEECCTTCH
T ss_pred CccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCC--CEEEEEECChhhHHHHHHHhc-------CCCEEEEECCCCCH
Confidence 455667788999999999999999999999998 65 255655442 2222332221 25789999999987
Q ss_pred CCCCCHHHHHHHhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeec
Q 042694 178 NLGLEEDLADVIAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVME 254 (554)
Q Consensus 178 ~lGLs~~~~~~l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E 254 (554)
+.+..+++++|+|||+||.... ...+.+.+++|+.||.+++++|.+. ++++||++||..++.+
T Consensus 83 ------~~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~-~v~~~V~~SS~~~~~p------- 148 (344)
T 2gn4_A 83 ------ERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKN-AISQVIALSTDKAANP------- 148 (344)
T ss_dssp ------HHHHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGGGSSC-------
T ss_pred ------HHHHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCCccCCC-------
Confidence 8888888999999999998763 2356789999999999999999985 7999999999644221
Q ss_pred cccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhh---cCCCcEEEEccceeeecccCC
Q 042694 255 KPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLE---RGDIPVVIIRPSVIESTCKEP 331 (554)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~---~~glp~~I~Rp~~V~g~~~~p 331 (554)
.+ .|..+|..+|.++..+.. ..|++++++|||.|+|+....
T Consensus 149 ------------------------~~------------~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~~ 192 (344)
T 2gn4_A 149 ------------------------IN------------LYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGSV 192 (344)
T ss_dssp ------------------------CS------------HHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTSH
T ss_pred ------------------------cc------------HHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCCH
Confidence 01 233345666666655442 258999999999999976433
Q ss_pred ccccccCCCCccceeeeeccce--eeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHH
Q 042694 332 FSGWMEGNRMMDPIILYYGKGQ--LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQD 409 (554)
Q Consensus 332 ~~g~~~~~~~~~~i~~~~~~G~--~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e 409 (554)
++.+... ...|. ++ + .+++...++++++|+|++++.++.... .+++|+++++ ++++.|
T Consensus 193 i~~~~~~----------~~~g~~~~~-i-~~~~~~r~~i~v~D~a~~v~~~l~~~~-----~g~~~~~~~~---~~s~~e 252 (344)
T 2gn4_A 193 VPFFKKL----------VQNKASEIP-I-TDIRMTRFWITLDEGVSFVLKSLKRMH-----GGEIFVPKIP---SMKMTD 252 (344)
T ss_dssp HHHHHHH----------HHHTCCCEE-E-SCTTCEEEEECHHHHHHHHHHHHHHCC-----SSCEEEECCC---EEEHHH
T ss_pred HHHHHHH----------HHcCCCceE-E-eCCCeEEeeEEHHHHHHHHHHHHhhcc-----CCCEEecCCC---cEEHHH
Confidence 3322211 11232 22 2 356677889999999999999887532 2579998776 699999
Q ss_pred HHHHHHhHhc
Q 042694 410 LARLLHEHYS 419 (554)
Q Consensus 410 ~~~~~~~~~~ 419 (554)
+++.+.+..+
T Consensus 253 l~~~i~~~~~ 262 (344)
T 2gn4_A 253 LAKALAPNTP 262 (344)
T ss_dssp HHHHHCTTCC
T ss_pred HHHHHHHhCC
Confidence 9999986543
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-27 Score=236.44 Aligned_cols=246 Identities=14% Similarity=0.112 Sum_probs=164.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhh-hccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQA-FMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~-~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.+++|||||||||||++|+++|++.+++ |+++++..... ......... ....++.++.+|+.
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~------------ 68 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGEE---VTVLDDLRVPP--MIPPEGTGKFLEKPVLELEERDLS------------ 68 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCC---EEEECCCSSCC--SSCCTTSSEEECSCGGGCCHHHHT------------
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCE---EEEEecCCccc--ccchhhhhhhccCCCeeEEeCccc------------
Confidence 4789999999999999999999998865 45544321000 000000000 01123334444443
Q ss_pred HHhcCccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 188 VIAKEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
++|+|||+||..... ......++ |+.||.+++++|++. ++++|||+||.++|+...+ .++.+.++.
T Consensus 69 ----~~d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~-~v~~~v~~SS~~v~~~~~~----~~~~E~~~~- 137 (321)
T 3vps_A 69 ----DVRLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSV-GVPKVVVGSTCEVYGQADT----LPTPEDSPL- 137 (321)
T ss_dssp ----TEEEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCSS----SSBCTTSCC-
T ss_pred ----cCCEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHc-CCCeEEEecCHHHhCCCCC----CCCCCCCCC-
Confidence 799999999987642 23345566 999999999999985 6899999999999987421 223222221
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCC-cEEEEccceeeecccCCccccccCCCCcc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDI-PVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~gl-p~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
.+.. .|..+|+.+|.++..+....++ +++|+||+.|||+...+ ..++ .
T Consensus 138 ------------~p~~------------~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~-~~~~------~ 186 (321)
T 3vps_A 138 ------------SPRS------------PYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERP-DALV------P 186 (321)
T ss_dssp ------------CCCS------------HHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCT-TSHH------H
T ss_pred ------------CCCC------------hhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCC-CChH------H
Confidence 1111 2344566777777766666789 99999999999977643 1111 1
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
.++..+..|....++++++...++++++|+|++++.++.... .+ +||++++ +++++.|+++.+. .+|..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~-----~g-~~~i~~~--~~~s~~e~~~~i~-~~g~~~ 256 (321)
T 3vps_A 187 RLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPL-----PS-VVNFGSG--QSLSVNDVIRILQ-ATSPAA 256 (321)
T ss_dssp HHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCC-----CS-EEEESCS--CCEEHHHHHHHHH-TTCTTC
T ss_pred HHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCC-----CC-eEEecCC--CcccHHHHHHHHH-HhCCCC
Confidence 111122233333455778888999999999999998875432 24 9999998 7899999999999 888653
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-26 Score=231.72 Aligned_cols=257 Identities=16% Similarity=0.129 Sum_probs=171.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++++|||||||||||++|+++|++.+. +|+++++..... ...... + ....++.++.+|+.++.
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~-~~~~~~-~--~~~~~~~~~~~D~~~~~--------- 88 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDGH---EVTVVDNFFTGR-KRNVEH-W--IGHENFELINHDVVEPL--------- 88 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCC-GGGTGG-G--TTCTTEEEEECCTTSCC---------
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCCC---EEEEEeCCCccc-hhhhhh-h--ccCCceEEEeCccCChh---------
Confidence 4678999999999999999999999876 455554311000 000000 0 01357889999998873
Q ss_pred HHhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccc-ceeeccccCCCCCc
Q 042694 188 VIAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRR-GKVMEKPFCMGDSI 263 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~-~~i~E~~~~~~~~~ 263 (554)
..++|+|||+||.... ..++...+++|+.||.+++++|++. +. +|||+||.++++... ..++|..+.+..+
T Consensus 89 --~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~- 163 (343)
T 2b69_A 89 --YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSEVYGDPEVHPQSEDYWGHVNP- 163 (343)
T ss_dssp --CCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCS-
T ss_pred --hcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CC-cEEEECcHHHhCCCCCCCCcccccccCCC-
Confidence 3579999999998764 2456788999999999999999985 55 899999999998642 1223322111000
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
..+. . .|..+|..+|.++..+....+++++|+||+.|||+...+..+. ...
T Consensus 164 ------------~~~~------~------~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~-----~~~ 214 (343)
T 2b69_A 164 ------------IGPR------A------CYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR-----VVS 214 (343)
T ss_dssp ------------SSTT------H------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCC-----HHH
T ss_pred ------------CCCC------C------chHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCccc-----HHH
Confidence 0111 1 2334456667766655444589999999999999865321110 001
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
.++..+..|....++++++...++++|+|+|++++.++... .+++||++++ .++++.|+++.+.+.+|..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~------~~~~~~i~~~--~~~s~~e~~~~i~~~~g~~~ 285 (343)
T 2b69_A 215 NFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN------VSSPVNLGNP--EEHTILEFAQLIKNLVGSGS 285 (343)
T ss_dssp HHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS------CCSCEEESCC--CEEEHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcC------CCCeEEecCC--CCCcHHHHHHHHHHHhCCCC
Confidence 11111112322234567778899999999999998876532 1468999998 79999999999999998753
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-26 Score=227.34 Aligned_cols=249 Identities=14% Similarity=0.123 Sum_probs=171.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|+++|++.|+ +|+++++.... . ......++.++.+|++++ +.+..+.
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~-------~--~~~~~~~~~~~~~Dl~~~------~~~~~~~ 62 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGL---EVAVLDNLATG-------K--RENVPKGVPFFRVDLRDK------EGVERAF 62 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC---EEEEECCCSSC-------C--GGGSCTTCCEECCCTTCH------HHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECCCcC-------c--hhhcccCeEEEECCCCCH------HHHHHHH
Confidence 4799999999999999999999876 45555431000 0 000124677899999987 7777777
Q ss_pred c--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeec-eecccccceeeccccCCCCCcc
Q 042694 191 K--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTA-YVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 191 ~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~-~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
+ ++|+|||+||..... +++...+++|+.||.+++++|++. ++++|||+||. ++++... ...++.+..+.
T Consensus 63 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~~g~~~---~~~~~~E~~~~- 137 (311)
T 2p5y_A 63 REFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-GVEKLVFASTGGAIYGEVP---EGERAEETWPP- 137 (311)
T ss_dssp HHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEHHHHHCCCC---TTCCBCTTSCC-
T ss_pred HhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCChhhcCCCC---CCCCcCCCCCC-
Confidence 6 899999999987642 456788999999999999999984 78999999999 8887511 01122221110
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcc--ccccCCCCc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFS--GWMEGNRMM 342 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~--g~~~~~~~~ 342 (554)
.+.. .|..+|..+|.++..+....|++++++||+.|||+...+.. +.+.
T Consensus 138 ------------~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~----- 188 (311)
T 2p5y_A 138 ------------RPKS------------PYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVA----- 188 (311)
T ss_dssp ------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHH-----
T ss_pred ------------CCCC------------hHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHH-----
Confidence 1111 23334555666655544445899999999999998653211 1110
Q ss_pred cceeeeeccceeeeee-----cCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 343 DPIILYYGKGQLTGFL-----VDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 343 ~~i~~~~~~G~~~~~~-----~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
.++..+..|....+. ++++...++++++|+|++++.++... +++||++++ .++|+.|+++.+.+.
T Consensus 189 -~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~-------~~~~~i~~~--~~~s~~e~~~~i~~~ 258 (311)
T 2p5y_A 189 -IFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSL-------EGIYNVGTG--EGHTTREVLMAVAEA 258 (311)
T ss_dssp -HHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHHHHC-------CEEEEESCS--CCEEHHHHHHHHHHH
T ss_pred -HHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHHhCC-------CCEEEeCCC--CCccHHHHHHHHHHH
Confidence 011111123222233 56667789999999999999887652 479999998 799999999999999
Q ss_pred hccC
Q 042694 418 YSAS 421 (554)
Q Consensus 418 ~~~~ 421 (554)
+|..
T Consensus 259 ~g~~ 262 (311)
T 2p5y_A 259 AGKA 262 (311)
T ss_dssp HTCC
T ss_pred hCCC
Confidence 9864
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-26 Score=227.96 Aligned_cols=248 Identities=13% Similarity=0.113 Sum_probs=159.1
Q ss_pred EEEEecccccccHHHHHHHHhhC-CCccEEEEEcchhHH-HHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTV-PDVGKIFIINAELFK-CLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~~~~~~-~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|||||||||||++|+++|++.+ +. |+++++.... ..... .++. +.+|+.++ +.++.+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~---V~~~~r~~~~~~~~~~----------~~~~-~~~d~~~~------~~~~~~ 60 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITD---ILVVDNLKDGTKFVNL----------VDLN-IADYMDKE------DFLIQI 60 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCC---EEEEECCSSGGGGHHH----------HTSC-CSEEEEHH------HHHHHH
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcE---EEEEccCCCCchhhhc----------Ccce-eccccccH------HHHHHH
Confidence 48999999999999999999987 54 4444432100 01000 1122 67898876 777887
Q ss_pred hcC-----ccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCc
Q 042694 190 AKE-----VDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSI 263 (554)
Q Consensus 190 ~~~-----vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~ 263 (554)
.++ +|+|||+||.... ..+++..+++|+.|+.+++++|++. ++ +|||+||.++++...+ .++++.++.
T Consensus 61 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~g~~~~----~~~~E~~~~ 134 (310)
T 1eq2_A 61 MAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTS----DFIESREYE 134 (310)
T ss_dssp HTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGGGGTTCCS----CBCSSGGGC
T ss_pred HhccccCCCcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeHHHhCCCCC----CCCCCCCCC
Confidence 764 9999999998664 3467889999999999999999985 67 9999999999886431 112211110
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
.+.. .|..+|..+|.++.......|++++++||+.|||+...+.... .. ...
T Consensus 135 -------------~p~~------------~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~-~~--~~~ 186 (310)
T 1eq2_A 135 -------------KPLN------------VYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSM-AS--VAF 186 (310)
T ss_dssp -------------CCSS------------HHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGG-SC--HHH
T ss_pred -------------CCCC------------hhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCcc-ch--HHH
Confidence 1111 2334466677777666555689999999999999765321100 00 111
Q ss_pred ceeeeeccceeeeeecCCCc-ccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 344 PIILYYGKGQLTGFLVDPNG-ILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~-~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
.++..+..|....++++++. ..++++|+|+|++++.++.... +++||++++ .++++.|+++.+.+.+|..
T Consensus 187 ~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~------~~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 257 (310)
T 1eq2_A 187 HLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV------SGIFNLGTG--RAESFQAVADATLAYHKKG 257 (310)
T ss_dssp HHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC------CEEEEESCS--CCBCHHHHHHHC-------
T ss_pred HHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcCC------CCeEEEeCC--CccCHHHHHHHHHHHcCCC
Confidence 11111122332233456667 8899999999999999886532 479999998 7899999999999998864
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-26 Score=226.65 Aligned_cols=235 Identities=14% Similarity=0.056 Sum_probs=164.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|+||||| +||||++|+++|++.+++| +++.+.. .. ...++.++.+|+.++ +.+..
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V---~~~~r~~--------~~-----~~~~~~~~~~Dl~d~------~~~~~ 58 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEV---TGLRRSA--------QP-----MPAGVQTLIADVTRP------DTLAS 58 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCE---EEEECTT--------SC-----CCTTCCEEECCTTCG------GGCTT
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEE---EEEeCCc--------cc-----cccCCceEEccCCCh------HHHHH
Confidence 357899999 5999999999999988754 4443321 00 235788899999987 66666
Q ss_pred HhcC-ccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccc
Q 042694 189 IAKE-VDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKEN 267 (554)
Q Consensus 189 l~~~-vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~ 267 (554)
+.++ +|+|||+||.. ....+...++|+.||.+++++|++ .++++|||+||.++|+...+ .++++..+.
T Consensus 59 ~~~~~~d~vih~a~~~--~~~~~~~~~~n~~~~~~ll~a~~~-~~~~~~v~~SS~~vyg~~~~----~~~~E~~~~---- 127 (286)
T 3gpi_A 59 IVHLRPEILVYCVAAS--EYSDEHYRLSYVEGLRNTLSALEG-APLQHVFFVSSTGVYGQEVE----EWLDEDTPP---- 127 (286)
T ss_dssp GGGGCCSEEEECHHHH--HHC-----CCSHHHHHHHHHHTTT-SCCCEEEEEEEGGGCCCCCS----SEECTTSCC----
T ss_pred hhcCCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHHHHHhh-CCCCEEEEEcccEEEcCCCC----CCCCCCCCC----
Confidence 7766 99999999863 345678889999999999999998 58899999999999987532 222222211
Q ss_pred ccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceee
Q 042694 268 FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIIL 347 (554)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~ 347 (554)
.+.. .|..+|..+|.. ... ++++|+||+.|||+... .++.....
T Consensus 128 ---------~p~~----------------~Y~~sK~~~E~~-~~~-~~~~ilR~~~v~G~~~~---~~~~~~~~------ 171 (286)
T 3gpi_A 128 ---------IAKD----------------FSGKRMLEAEAL-LAA-YSSTILRFSGIYGPGRL---RMIRQAQT------ 171 (286)
T ss_dssp ---------CCCS----------------HHHHHHHHHHHH-GGG-SSEEEEEECEEEBTTBC---HHHHHTTC------
T ss_pred ---------CCCC----------------hhhHHHHHHHHH-Hhc-CCeEEEecccccCCCch---hHHHHHHh------
Confidence 1111 123334444444 333 99999999999997653 22221111
Q ss_pred eeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCCCC
Q 042694 348 YYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCV 424 (554)
Q Consensus 348 ~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p~~ 424 (554)
. ...++++...++++++|+|++++.++..... ...+++||++++ +++++.|+++.+.+.+|..+..
T Consensus 172 --~-----~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~--~~~~~~~~~~~~--~~~s~~e~~~~i~~~~g~~~~~ 237 (286)
T 3gpi_A 172 --P-----EQWPARNAWTNRIHRDDGAAFIAYLIQQRSH--AVPERLYIVTDN--QPLPVHDLLRWLADRQGIAYPA 237 (286)
T ss_dssp --G-----GGSCSSBCEECEEEHHHHHHHHHHHHHHHTT--SCCCSEEEECCS--CCEEHHHHHHHHHHHTTCCCCC
T ss_pred --c-----ccCCCcCceeEEEEHHHHHHHHHHHHhhhcc--CCCCceEEEeCC--CCCCHHHHHHHHHHHcCCCCCC
Confidence 0 0124566778999999999999998876421 123589999998 7899999999999999976543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=229.84 Aligned_cols=277 Identities=15% Similarity=0.146 Sum_probs=173.3
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEE-EccCCCCCCCCC
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPA-VGNVCENNLGLE 182 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v-~GDl~~~~lGLs 182 (554)
.+.++++|||||||||||++|+++|++.|+ +|+++.+. ..+.+..... .....++.++ .+|++++
T Consensus 7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~D~~d~----- 74 (342)
T 1y1p_A 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGY---KVRGTARSASKLANLQKRWD----AKYPGRFETAVVEDMLKQ----- 74 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHH----HHSTTTEEEEECSCTTST-----
T ss_pred cCCCCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCcccHHHHHHHhh----ccCCCceEEEEecCCcCh-----
Confidence 346789999999999999999999999876 45555432 1222222110 0012478888 8999987
Q ss_pred HHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccc-----ceeecccc
Q 042694 183 EDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRR-----GKVMEKPF 257 (554)
Q Consensus 183 ~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~-----~~i~E~~~ 257 (554)
+.++.+++++|+|||+||......++...+++|+.||.+++++|.+..++++|||+||.++++... ..++|..+
T Consensus 75 -~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~ 153 (342)
T 1y1p_A 75 -GAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSW 153 (342)
T ss_dssp -TTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCC
T ss_pred -HHHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCcccc
Confidence 667777789999999999887766778899999999999999998534789999999999975421 12233211
Q ss_pred CCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc--CCCcEEEEccceeeecccCCcccc
Q 042694 258 CMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER--GDIPVVIIRPSVIESTCKEPFSGW 335 (554)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~--~glp~~I~Rp~~V~g~~~~p~~g~ 335 (554)
.+........ + +......... .|..+|..+|.++..+... .+++++++||+.|||+...+....
T Consensus 154 ~~~~~~~~~~-----~---~~~~~~~~~~------~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~ 219 (342)
T 1y1p_A 154 NLESIDKAKT-----L---PESDPQKSLW------VYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQS 219 (342)
T ss_dssp CHHHHHHHHH-----S---CTTSTTHHHH------HHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCC
T ss_pred Cchhhhhhcc-----c---cccccccchH------HHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCC
Confidence 0000000000 0 0000000112 2344566666666554432 378999999999999866432110
Q ss_pred ccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHH
Q 042694 336 MEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLH 415 (554)
Q Consensus 336 ~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~ 415 (554)
+ ....++..+..|....+.++. ...++++|+|+|++++.++..... .+..| ++++ .++++.|+++.+.
T Consensus 220 --~--~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~Dva~a~~~~~~~~~~----~g~~~-~~~g--~~~s~~e~~~~i~ 287 (342)
T 1y1p_A 220 --G--STSGWMMSLFNGEVSPALALM-PPQYYVSAVDIGLLHLGCLVLPQI----ERRRV-YGTA--GTFDWNTVLATFR 287 (342)
T ss_dssp --C--HHHHHHHHHHTTCCCHHHHTC-CSEEEEEHHHHHHHHHHHHHCTTC----CSCEE-EECC--EEECHHHHHHHHH
T ss_pred --c--cHHHHHHHHHcCCCccccccC-CcCCEeEHHHHHHHHHHHHcCccc----CCceE-EEeC--CCCCHHHHHHHHH
Confidence 0 001111111122211112332 457999999999999988765322 13344 3444 5899999999999
Q ss_pred hHhccC
Q 042694 416 EHYSAS 421 (554)
Q Consensus 416 ~~~~~~ 421 (554)
+.++..
T Consensus 288 ~~~~~~ 293 (342)
T 1y1p_A 288 KLYPSK 293 (342)
T ss_dssp HHCTTS
T ss_pred HHCCCc
Confidence 998864
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=212.48 Aligned_cols=223 Identities=12% Similarity=0.046 Sum_probs=154.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|||||||||+|++|+++|++.+. +|+++.+..- .... ...++.++.+|++++ +++..+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~-----~~~~-----~~~~~~~~~~Dl~d~------~~~~~~ 64 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGF---EVTAVVRHPE-----KIKI-----ENEHLKVKKADVSSL------DEVCEV 64 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTC---EEEEECSCGG-----GCCC-----CCTTEEEECCCTTCH------HHHHHH
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEEcCcc-----cchh-----ccCceEEEEecCCCH------HHHHHH
Confidence 57999999999999999999999875 5666654310 1111 236899999999987 889999
Q ss_pred hcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccccc
Q 042694 190 AKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFV 269 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~ 269 (554)
++++|+|||+|+.... ....+++|+.++.+++++|++. ++++|||+||.+++....+...|. .+.
T Consensus 65 ~~~~d~vi~~a~~~~~---~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~-----~~~------ 129 (227)
T 3dhn_A 65 CKGADAVISAFNPGWN---NPDIYDETIKVYLTIIDGVKKA-GVNRFLMVGGAGSLFIAPGLRLMD-----SGE------ 129 (227)
T ss_dssp HTTCSEEEECCCC---------CCSHHHHHHHHHHHHHHHT-TCSEEEEECCSTTSEEETTEEGGG-----TTC------
T ss_pred hcCCCEEEEeCcCCCC---ChhHHHHHHHHHHHHHHHHHHh-CCCEEEEeCChhhccCCCCCcccc-----CCc------
Confidence 9999999999986422 2237888999999999999984 789999999998766543222111 000
Q ss_pred ccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeee
Q 042694 270 SNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYY 349 (554)
Q Consensus 270 ~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~ 349 (554)
.+.. .|..+|..+|.+.+.+.+..+++++++||+.|||+.... +.. . .
T Consensus 130 -------~p~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~--~~~---------~--~ 177 (227)
T 3dhn_A 130 -------VPEN------------ILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRT--GRY---------R--L 177 (227)
T ss_dssp -------SCGG------------GHHHHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCC--CCC---------E--E
T ss_pred -------chHH------------HHHHHHHHHHHHHHHHhhccCccEEEEeCCcccCCCccc--cce---------e--e
Confidence 0111 234456667766666665679999999999999975421 110 0 1
Q ss_pred ccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHH
Q 042694 350 GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQ 408 (554)
Q Consensus 350 ~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~ 408 (554)
+. ..+.. ..+ ..++++++|+|++++.++..+.. .+++||++++ ++.+|.
T Consensus 178 ~~-~~~~~--~~~-~~~~i~~~Dva~ai~~~l~~~~~----~g~~~~~~~~--~~~~~~ 226 (227)
T 3dhn_A 178 GK-DDMIV--DIV-GNSHISVEDYAAAMIDELEHPKH----HQERFTIGYL--EHHHHH 226 (227)
T ss_dssp ES-SBCCC--CTT-SCCEEEHHHHHHHHHHHHHSCCC----CSEEEEEECC--SCCC--
T ss_pred cC-CCccc--CCC-CCcEEeHHHHHHHHHHHHhCccc----cCcEEEEEee--hhcccC
Confidence 11 11111 112 27999999999999999877543 3689999999 677775
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=220.28 Aligned_cols=224 Identities=15% Similarity=0.135 Sum_probs=160.2
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK 191 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~ 191 (554)
+|||||||||||++|+++|+++++ +|+++.+ +.+|+.++ +.+..+++
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r------------------------~~~D~~d~------~~~~~~~~ 53 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEEY---DIYPFDK------------------------KLLDITNI------SQVQQVVQ 53 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTTE---EEEEECT------------------------TTSCTTCH------HHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC---EEEEecc------------------------cccCCCCH------HHHHHHHH
Confidence 899999999999999999998775 5666553 23788877 77777777
Q ss_pred --CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccc
Q 042694 192 --EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 192 --~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~ 266 (554)
++|+|||+||..... +++...+++|+.|+.+++++|++. +. +|||+||.++|+... ..++++.++.
T Consensus 54 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~SS~~vy~~~~----~~~~~E~~~~--- 124 (287)
T 3sc6_A 54 EIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLV-GA-KLVYISTDYVFQGDR----PEGYDEFHNP--- 124 (287)
T ss_dssp HHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGSCCCC----SSCBCTTSCC---
T ss_pred hcCCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchhhhcCCCC----CCCCCCCCCC---
Confidence 799999999988764 367899999999999999999985 55 699999999998642 2233332221
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
.+.. .|..+|..+|......+.+++|+||+.|||+.... ++. .++
T Consensus 125 ----------~p~~----------------~Y~~sK~~~E~~~~~~~~~~~ilR~~~v~G~~~~~---~~~------~~~ 169 (287)
T 3sc6_A 125 ----------APIN----------------IYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNN---FVK------TMI 169 (287)
T ss_dssp ----------CCCS----------------HHHHHHHHHHHHHHHHCSSEEEEEECSEECSSSCC---HHH------HHH
T ss_pred ----------CCCC----------------HHHHHHHHHHHHHHHhCCCcEEEeeeeecCCCCCc---HHH------HHH
Confidence 1111 12333344444333334589999999999976532 211 111
Q ss_pred eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 347 LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 347 ~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
.....|....+.+ +...++++++|+|++++.++.... +++||++++ .++++.|+++.+.+.+|..+
T Consensus 170 ~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~------~~~~~i~~~--~~~s~~e~~~~i~~~~g~~~ 235 (287)
T 3sc6_A 170 RLGKEREEISVVA--DQIGSPTYVADLNVMINKLIHTSL------YGTYHVSNT--GSCSWFEFAKKIFSYANMKV 235 (287)
T ss_dssp HHHTTCSEEEEEC--SCEECCEEHHHHHHHHHHHHTSCC------CEEEECCCB--SCEEHHHHHHHHHHHHTCCC
T ss_pred HHHHcCCCeEeec--CcccCceEHHHHHHHHHHHHhCCC------CCeEEEcCC--CcccHHHHHHHHHHHcCCCc
Confidence 1111222222223 367899999999999998876532 479999998 78999999999999998753
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=225.15 Aligned_cols=248 Identities=17% Similarity=0.137 Sum_probs=169.0
Q ss_pred EEEEecccccccHHHHHHHHhh--CCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRT--VPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~--~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|||||||||||++|+++|++. +.+ |++++... + ...++.++.+|++++ +.+..+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~---V~~~~r~~--------~------~~~~~~~~~~D~~d~------~~~~~~ 57 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKN---VIASDIVQ--------R------DTGGIKFITLDVSNR------DEIDRA 57 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGG---EEEEESSC--------C------CCTTCCEEECCTTCH------HHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCE---EEEecCCC--------c------cccCceEEEecCCCH------HHHHHH
Confidence 4899999999999999999997 554 44443210 0 011456789999987 778877
Q ss_pred hc--CccEEEEcCCCCCc--hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 190 AK--EVDVIVNSAANTTF--DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 190 ~~--~vdiViH~AA~v~~--~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
++ ++|+|||+||.... ...+...+++|+.||.+++++|++. ++++|||+||.++++.... ..+.++..+
T Consensus 58 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~---~~~~~e~~~--- 130 (317)
T 3ajr_A 58 VEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQH-RVEKVVIPSTIGVFGPETP---KNKVPSITI--- 130 (317)
T ss_dssp HHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCCTTSC---SSSBCSSSC---
T ss_pred HhhcCCcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHc-CCCEEEEecCHHHhCCCCC---CCCcccccc---
Confidence 77 89999999997643 3457788999999999999999984 7899999999999886321 111111111
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
..+.. .|..+|..+|.+++.+....|++++++||+.+||+...|-.+..+ .....
T Consensus 131 ----------~~p~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~---~~~~~ 185 (317)
T 3ajr_A 131 ----------TRPRT------------MFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTD---YAVEI 185 (317)
T ss_dssp ----------CCCCS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSST---HHHHH
T ss_pred ----------CCCCc------------hHHHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchh---HHHHH
Confidence 01111 233445666776665554558999999999999976543221110 00111
Q ss_pred e-eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhc
Q 042694 346 I-LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYS 419 (554)
Q Consensus 346 ~-~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~ 419 (554)
+ .....|... .+++++...++++|+|+|++++.++..... ....+++||++++ ++++.|+++.+.+.++
T Consensus 186 ~~~~~~~~~~~-~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~g~~~~i~~~---~~s~~e~~~~i~~~~~ 255 (317)
T 3ajr_A 186 FYYAVKREKYK-CYLAPNRALPMMYMPDALKALVDLYEADRD-KLVLRNGYNVTAY---TFTPSELYSKIKERIP 255 (317)
T ss_dssp HHHHHTTCCEE-ECSCTTCCEEEEEHHHHHHHHHHHHHCCGG-GCSSCSCEECCSE---EECHHHHHHHHHTTCC
T ss_pred HHHHHhCCCce-eecCccceeeeeEHHHHHHHHHHHHhCCcc-ccccCceEecCCc---cccHHHHHHHHHHHCC
Confidence 1 111223332 335667789999999999999988765332 1112479999863 7999999999998876
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=228.17 Aligned_cols=256 Identities=10% Similarity=0.068 Sum_probs=174.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCC--CccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVP--DVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~--~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+|||||||||||++|+++|+++++ .+.+|+++++.... .. ....++.++.+|++++ +.+.
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~-------~~---~~~~~~~~~~~Dl~d~------~~~~ 64 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRP-------AW---HEDNPINYVQCDISDP------DDSQ 64 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCC-------SC---CCSSCCEEEECCTTSH------HHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCc-------cc---cccCceEEEEeecCCH------HHHH
Confidence 47899999999999999999998771 11256666542100 00 0234788999999987 7888
Q ss_pred HHhcC---ccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHc-CCCceEE-------EEeeceecccccceeeccc
Q 042694 188 VIAKE---VDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC-NKLKLFV-------QVSTAYVNGQRRGKVMEKP 256 (554)
Q Consensus 188 ~l~~~---vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v-------~vST~~v~~~~~~~i~E~~ 256 (554)
.++++ +|+|||+||... .++...+++|+.||.+++++|++. +++++|| |+||.++|+.... .+.+
T Consensus 65 ~~~~~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~--~~~~ 140 (364)
T 2v6g_A 65 AKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIES--HDPP 140 (364)
T ss_dssp HHHTTCTTCCEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCC--CCSS
T ss_pred HHHhcCCCCCEEEECCCCCc--chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhcccccc--CCCC
Confidence 88887 999999999764 457788999999999999999874 2688998 8999999886420 1122
Q ss_pred cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCC-CcEEEEccceeeecccCCcccc
Q 042694 257 FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGD-IPVVIIRPSVIESTCKEPFSGW 335 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~g-lp~~I~Rp~~V~g~~~~p~~g~ 335 (554)
+.+.++.. +. ...|..+|.++..+.+..+ ++++|+||+.|||+...+....
T Consensus 141 ~~E~~~~~------------~~----------------~~~y~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~ 192 (364)
T 2v6g_A 141 YTEDLPRL------------KY----------------MNFYYDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNL 192 (364)
T ss_dssp BCTTSCCC------------SS----------------CCHHHHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCH
T ss_pred CCccccCC------------cc----------------chhhHHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccch
Confidence 22221100 10 1123346777666554455 9999999999999866432221
Q ss_pred ccCCCCccceeeee--ccceeeeeecCC---CcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHH
Q 042694 336 MEGNRMMDPIILYY--GKGQLTGFLVDP---NGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDL 410 (554)
Q Consensus 336 ~~~~~~~~~i~~~~--~~G~~~~~~~~~---~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~ 410 (554)
... ..++... ..|....+++++ ....++++|||+|++++.++..... .+++||++++ .++|+.|+
T Consensus 193 ~~~----~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~----~g~~~ni~~~--~~~s~~e~ 262 (364)
T 2v6g_A 193 VGT----LCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYA----KNEAFNVSNG--DVFKWKHF 262 (364)
T ss_dssp HHH----HHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGGG----TTEEEEECCS--CCBCHHHH
T ss_pred HHH----HHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCCCC----CCceEEecCC--CcCCHHHH
Confidence 000 0011111 123322333444 3457899999999999998865432 2579999998 78999999
Q ss_pred HHHHHhHhccCCC
Q 042694 411 ARLLHEHYSASPC 423 (554)
Q Consensus 411 ~~~~~~~~~~~p~ 423 (554)
++.+.+.+|..+.
T Consensus 263 ~~~i~~~~g~~~~ 275 (364)
T 2v6g_A 263 WKVLAEQFGVECG 275 (364)
T ss_dssp HHHHHHHHTCCBC
T ss_pred HHHHHHHhCCCCC
Confidence 9999999997643
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-25 Score=229.17 Aligned_cols=259 Identities=17% Similarity=0.101 Sum_probs=173.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH----HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF----KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~----~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++|||||||||||++|+++|++.+. +|+++++... +++...... .......++.++.+|++++ +.+
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~Dl~d~------~~~ 94 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGY---EVHGIVRRSSSFNTGRIEHLYKN-PQAHIEGNMKLHYGDLTDS------TCL 94 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCH------HHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCccccchhhHHHHhhh-hccccCCCceEEEccCCCH------HHH
Confidence 6899999999999999999999875 4555543210 001000000 0000124788999999987 777
Q ss_pred HHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCC---ceEEEEeeceecccccceeeccccC
Q 042694 187 DVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKL---KLFVQVSTAYVNGQRRGKVMEKPFC 258 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~---k~~v~vST~~v~~~~~~~i~E~~~~ 258 (554)
..+++ ++|+|||+||..... ++++..+++|+.||.+++++|.+. ++ ++|||+||.++++...+ .+++
T Consensus 95 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~~~~iv~~SS~~~~~~~~~----~~~~ 169 (375)
T 1t2a_A 95 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC-GLINSVKFYQASTSELYGKVQE----IPQK 169 (375)
T ss_dssp HHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGGGTCSCSS----SSBC
T ss_pred HHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEecchhhhCCCCC----CCCC
Confidence 77776 479999999987653 457788999999999999999984 55 79999999999886421 1222
Q ss_pred CCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC
Q 042694 259 MGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG 338 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~ 338 (554)
+.++. .+.. .|..+|..+|.++..+....+++++++||+.+||+...+ ++...
T Consensus 170 E~~~~-------------~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~--~~~~~ 222 (375)
T 1t2a_A 170 ETTPF-------------YPRS------------PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGA--NFVTR 222 (375)
T ss_dssp TTSCC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCT--TSHHH
T ss_pred ccCCC-------------CCCC------------hhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCC--CcchH
Confidence 22110 1111 233345666666665544458999999999999976431 22110
Q ss_pred CCCccceeeeecccee-eeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 339 NRMMDPIILYYGKGQL-TGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 339 ~~~~~~i~~~~~~G~~-~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
.....+..+..|.. ....++++...++++|||+|++++.++.... .++||++++ .++++.|+++.+.+.
T Consensus 223 --~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~------~~~~ni~~~--~~~s~~e~~~~i~~~ 292 (375)
T 1t2a_A 223 --KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDE------PEDFVIATG--EVHSVREFVEKSFLH 292 (375)
T ss_dssp --HHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSS------CCCEEECCS--CCEEHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHHHHHHHhcCC------CceEEEeCC--CcccHHHHHHHHHHH
Confidence 00111111112321 1234677888999999999999998876422 268999998 789999999999999
Q ss_pred hccC
Q 042694 418 YSAS 421 (554)
Q Consensus 418 ~~~~ 421 (554)
+|..
T Consensus 293 ~g~~ 296 (375)
T 1t2a_A 293 IGKT 296 (375)
T ss_dssp TTCC
T ss_pred hCCC
Confidence 9865
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=214.16 Aligned_cols=224 Identities=17% Similarity=0.161 Sum_probs=156.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+|||||| ||||++|+++|+++++ +|+++.+. ..+.+ ...++.++.+|+.+. +
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~-----------~~~~~~~~~~D~~d~------~--- 60 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGW---RIIGTSRNPDQMEAI-----------RASGAEPLLWPGEEP------S--- 60 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTC---EEEEEESCGGGHHHH-----------HHTTEEEEESSSSCC------C---
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCC---EEEEEEcChhhhhhH-----------hhCCCeEEEeccccc------c---
Confidence 478999998 9999999999999886 45555432 11111 124788999999984 2
Q ss_pred HHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecccccceeeccccCCCCCcccc
Q 042694 188 VIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~ 266 (554)
.+++|+|||+|+......+ .+.+++++|++. .++++|||+||.++|+...+ .++.+.++.
T Consensus 61 --~~~~d~vi~~a~~~~~~~~----------~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~----~~~~E~~~~--- 121 (286)
T 3ius_A 61 --LDGVTHLLISTAPDSGGDP----------VLAALGDQIAARAAQFRWVGYLSTTAVYGDHDG----AWVDETTPL--- 121 (286)
T ss_dssp --CTTCCEEEECCCCBTTBCH----------HHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTT----CEECTTSCC---
T ss_pred --cCCCCEEEECCCccccccH----------HHHHHHHHHHhhcCCceEEEEeecceecCCCCC----CCcCCCCCC---
Confidence 5789999999998655432 357889999874 37899999999999987532 122222211
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
.+.+ .|..+|+.+|.++... .+++++|+||+.|||+...++...
T Consensus 122 ----------~p~~------------~Y~~sK~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~----------- 165 (286)
T 3ius_A 122 ----------TPTA------------ARGRWRVMAEQQWQAV---PNLPLHVFRLAGIYGPGRGPFSKL----------- 165 (286)
T ss_dssp ----------CCCS------------HHHHHHHHHHHHHHHS---TTCCEEEEEECEEEBTTBSSSTTS-----------
T ss_pred ----------CCCC------------HHHHHHHHHHHHHHhh---cCCCEEEEeccceECCCchHHHHH-----------
Confidence 1111 1223344555554443 489999999999999876442211
Q ss_pred eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCCC
Q 042694 347 LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPC 423 (554)
Q Consensus 347 ~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p~ 423 (554)
..|....+.. ++...++++|+|+|++++.++.... .+++||++++ +++++.|+++.+.+.+|..+.
T Consensus 166 ---~~~~~~~~~~-~~~~~~~i~v~Dva~a~~~~~~~~~-----~g~~~~i~~~--~~~s~~e~~~~i~~~~g~~~~ 231 (286)
T 3ius_A 166 ---GKGGIRRIIK-PGQVFSRIHVEDIAQVLAASMARPD-----PGAVYNVCDD--EPVPPQDVIAYAAELQGLPLP 231 (286)
T ss_dssp ---SSSCCCEEEC-TTCCBCEEEHHHHHHHHHHHHHSCC-----TTCEEEECCS--CCBCHHHHHHHHHHHHTCCCC
T ss_pred ---hcCCccccCC-CCcccceEEHHHHHHHHHHHHhCCC-----CCCEEEEeCC--CCccHHHHHHHHHHHcCCCCC
Confidence 1122222222 3567899999999999999887643 2479999998 789999999999999997643
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-25 Score=229.23 Aligned_cols=259 Identities=17% Similarity=0.111 Sum_probs=173.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH----HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF----KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~----~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
||+|||||||||||++|+++|++.+. +|+++++... +++...... ......++.++.+|++++ +.
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~d~------~~ 69 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGY---EVHGIKRRASSFNTERVDHIYQD--PHTCNPKFHLHYGDLSDT------SN 69 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECC-----------------------CCEEECCCCSSCH------HH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCCcccchHHHHHHhhc--cccCCCceEEEECCCCCH------HH
Confidence 57899999999999999999999875 5666654321 111110000 000124788999999987 77
Q ss_pred HHHHhcC--ccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCC---ceEEEEeeceecccccceeecccc
Q 042694 186 ADVIAKE--VDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKL---KLFVQVSTAYVNGQRRGKVMEKPF 257 (554)
Q Consensus 186 ~~~l~~~--vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~---k~~v~vST~~v~~~~~~~i~E~~~ 257 (554)
+..++++ +|+|||+||..... +.+...+++|+.||.+++++|.+. ++ ++|||+||.++++... ..++
T Consensus 70 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~~iv~~SS~~v~g~~~----~~~~ 144 (372)
T 1db3_A 70 LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL-GLEKKTRFYQASTSELYGLVQ----EIPQ 144 (372)
T ss_dssp HHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGGGGTTCC----SSSB
T ss_pred HHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCCCcEEEEeCChhhhCCCC----CCCC
Confidence 7777764 79999999976542 456778899999999999999984 56 7999999999988642 1122
Q ss_pred CCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcccccc
Q 042694 258 CMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWME 337 (554)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~ 337 (554)
++..+. .+.. .|..+|..+|.+++......+++++++||+.+||+...+ ++..
T Consensus 145 ~E~~~~-------------~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~--~~~~ 197 (372)
T 1db3_A 145 KETTPF-------------YPRS------------PYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGE--TFVT 197 (372)
T ss_dssp CTTSCC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCT--TSHH
T ss_pred CccCCC-------------CCCC------------hHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCC--cchh
Confidence 222111 1111 233345566666665544458999999999999976532 1111
Q ss_pred CCCCccceeeeecccee-eeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHh
Q 042694 338 GNRMMDPIILYYGKGQL-TGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHE 416 (554)
Q Consensus 338 ~~~~~~~i~~~~~~G~~-~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~ 416 (554)
. ....++..+..|.. ....++++...++++|||+|++++.++.... .++||++++ +++++.|+++.+.+
T Consensus 198 ~--~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~------~~~~ni~~~--~~~s~~e~~~~i~~ 267 (372)
T 1db3_A 198 R--KITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQ------PEDFVIATG--VQYSVRQFVEMAAA 267 (372)
T ss_dssp H--HHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSSS------CCCEEECCC--CCEEHHHHHHHHHH
T ss_pred h--HHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHHHHHHHhcCC------CceEEEcCC--CceeHHHHHHHHHH
Confidence 0 00111111223322 2234677888999999999999988764321 368999998 78999999999999
Q ss_pred HhccC
Q 042694 417 HYSAS 421 (554)
Q Consensus 417 ~~~~~ 421 (554)
.+|..
T Consensus 268 ~~g~~ 272 (372)
T 1db3_A 268 QLGIK 272 (372)
T ss_dssp TTTEE
T ss_pred HhCCC
Confidence 98864
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-25 Score=224.48 Aligned_cols=255 Identities=15% Similarity=0.037 Sum_probs=175.0
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
++|+|||||||||||++|+++|++.|+ +|+++++.. .+.+.... ...++.++.+|++++ +
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~d~------~ 65 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGY---EVYGADRRSGEFASWRLKELG-------IENDVKIIHMDLLEF------S 65 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCCSTTTTHHHHHTT-------CTTTEEECCCCTTCH------H
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCCcccccccHhhcc-------ccCceeEEECCCCCH------H
Confidence 468999999999999999999999875 566654321 11222111 124788999999987 7
Q ss_pred HHHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCC-ceEEEEeeceecccccceeeccccC
Q 042694 185 LADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKL-KLFVQVSTAYVNGQRRGKVMEKPFC 258 (554)
Q Consensus 185 ~~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~-k~~v~vST~~v~~~~~~~i~E~~~~ 258 (554)
.+..+++ ++|+|||+||..... ++++..+++|+.||.+++++|.++ ++ ++|||+||.++|+...+ .++.
T Consensus 66 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~~vyg~~~~----~~~~ 140 (345)
T 2z1m_A 66 NIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQASTSEMFGKVQE----IPQT 140 (345)
T ss_dssp HHHHHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEEEGGGGCSCSS----SSBC
T ss_pred HHHHHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEechhhcCCCCC----CCCC
Confidence 7777776 469999999987642 467888999999999999999986 55 89999999999986421 1222
Q ss_pred CCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC
Q 042694 259 MGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG 338 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~ 338 (554)
+..+ .++.. .|..+|..+|.+++.+....++++++.|+..++|+.... .+...
T Consensus 141 e~~~-------------~~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~--~~~~~ 193 (345)
T 2z1m_A 141 EKTP-------------FYPRS------------PYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGI--EFVTR 193 (345)
T ss_dssp TTSC-------------CCCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCT--TSHHH
T ss_pred ccCC-------------CCCCC------------hhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCC--cchhH
Confidence 2111 01111 233345666666665544458999999999999965321 11000
Q ss_pred CCCccceeeeeccce-eeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 339 NRMMDPIILYYGKGQ-LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 339 ~~~~~~i~~~~~~G~-~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
.....+.....|. .....++++...++++++|+|++++.++.... .++||++++ .++++.|+++.+.+.
T Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~~------~~~~~i~~~--~~~s~~e~~~~i~~~ 263 (345)
T 2z1m_A 194 --KITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPE------PDDYVIATG--ETHTVREFVEKAAKI 263 (345)
T ss_dssp --HHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHTSSS------CCCEEECCS--CCEEHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCCC------CceEEEeCC--CCccHHHHHHHHHHH
Confidence 0000011111222 12234566777899999999999998875421 268999998 789999999999999
Q ss_pred hccC
Q 042694 418 YSAS 421 (554)
Q Consensus 418 ~~~~ 421 (554)
+|..
T Consensus 264 ~g~~ 267 (345)
T 2z1m_A 264 AGFD 267 (345)
T ss_dssp TTCC
T ss_pred hCCC
Confidence 9875
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-25 Score=224.88 Aligned_cols=246 Identities=18% Similarity=0.201 Sum_probs=168.6
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.+.+++|+|||||||||||++|+++|++.+. +|+++++..... .+... ...++.++.+|++++ +
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~---~V~~~~r~~~~~-~~~~~------~l~~v~~~~~Dl~d~------~ 78 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGH---EILVIDNFATGK-REVLP------PVAGLSVIEGSVTDA------G 78 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGTC---EEEEEECCSSSC-GGGSC------SCTTEEEEECCTTCH------H
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCccc-hhhhh------ccCCceEEEeeCCCH------H
Confidence 3456789999999999999999999999886 455554311000 00000 125788999999987 8
Q ss_pred HHHHHhc--CccEEEEcCCCCCc--hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCC
Q 042694 185 LADVIAK--EVDVIVNSAANTTF--DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMG 260 (554)
Q Consensus 185 ~~~~l~~--~vdiViH~AA~v~~--~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~ 260 (554)
.++.+++ ++|+|||+||.... .+.++ +++|+.|+.+++++|.+. ++++|||+||.++++...+ .+.++++.
T Consensus 79 ~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~~~~~~~~--~~~~~~E~ 153 (330)
T 2pzm_A 79 LLERAFDSFKPTHVVHSAAAYKDPDDWAED--AATNVQGSINVAKAASKA-GVKRLLNFQTALCYGRPAT--VPIPIDSP 153 (330)
T ss_dssp HHHHHHHHHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHH-TCSEEEEEEEGGGGCSCSS--SSBCTTCC
T ss_pred HHHHHHhhcCCCEEEECCccCCCccccChh--HHHHHHHHHHHHHHHHHc-CCCEEEEecCHHHhCCCcc--CCCCcCCC
Confidence 8888888 99999999998764 23344 899999999999999984 7899999999999875421 01122211
Q ss_pred CCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCC
Q 042694 261 DSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNR 340 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~ 340 (554)
+ .+ ...|..+|..+|.+....+++++++||+.+||+... .+++.
T Consensus 154 ~---------------~~----------------~~~Y~~sK~~~e~~~~~~~~~~~~iR~~~v~gp~~~--~~~~~--- 197 (330)
T 2pzm_A 154 T---------------AP----------------FTSYGISKTAGEAFLMMSDVPVVSLRLANVTGPRLA--IGPIP--- 197 (330)
T ss_dssp C---------------CC----------------CSHHHHHHHHHHHHHHTCSSCEEEEEECEEECTTCC--SSHHH---
T ss_pred C---------------CC----------------CChHHHHHHHHHHHHHHcCCCEEEEeeeeeECcCCC--CCHHH---
Confidence 1 00 011333444444444333899999999999997641 12111
Q ss_pred CccceeeeeccceeeeeecCCCcccccchhhHHHH-HHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhc
Q 042694 341 MMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVN-ATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYS 419 (554)
Q Consensus 341 ~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~-aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~ 419 (554)
.++..+..|. ...+++. ..++++++|+|+ +++.++... . +++||++++ .++++.|+++.+.+.+|
T Consensus 198 ---~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~~~~~~-----~-g~~~~v~~~--~~~s~~e~~~~i~~~~g 263 (330)
T 2pzm_A 198 ---TFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLSLQEGR-----P-TGVFNVSTG--EGHSIKEVFDVVLDYVG 263 (330)
T ss_dssp ---HHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHHTSTTC-----C-CEEEEESCS--CCEEHHHHHHHHHHHHT
T ss_pred ---HHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHHHhhcC-----C-CCEEEeCCC--CCCCHHHHHHHHHHHhC
Confidence 1111111222 1223445 689999999999 998876542 1 589999998 78999999999999998
Q ss_pred cC
Q 042694 420 AS 421 (554)
Q Consensus 420 ~~ 421 (554)
..
T Consensus 264 ~~ 265 (330)
T 2pzm_A 264 AT 265 (330)
T ss_dssp CC
T ss_pred CC
Confidence 76
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-25 Score=224.20 Aligned_cols=245 Identities=18% Similarity=0.202 Sum_probs=162.7
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.....++|+|||||||||||++|+++|++.+. +|+++++..... .+... ...++.++.+|++++
T Consensus 15 ~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~-~~~l~------~~~~~~~~~~Dl~d~------ 78 (333)
T 2q1w_A 15 VPRGSHMKKVFITGICGQIGSHIAELLLERGD---KVVGIDNFATGR-REHLK------DHPNLTFVEGSIADH------ 78 (333)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCC-GGGSC------CCTTEEEEECCTTCH------
T ss_pred eeecCCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEECCCccc-hhhHh------hcCCceEEEEeCCCH------
Confidence 33446789999999999999999999999875 566654321000 00000 015788999999987
Q ss_pred HHHHHHhcC--ccEEEEcCCCCCch--hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecc----cccceeecc
Q 042694 184 DLADVIAKE--VDVIVNSAANTTFD--ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNG----QRRGKVMEK 255 (554)
Q Consensus 184 ~~~~~l~~~--vdiViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~----~~~~~i~E~ 255 (554)
+.++.++++ +|+|||+||..... ..++ +++|+.|+.+++++|.+. ++++|||+||.++++ ...+
T Consensus 79 ~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~~~g~~~~~~~~----- 150 (333)
T 2q1w_A 79 ALVNQLIGDLQPDAVVHTAASYKDPDDWYND--TLTNCVGGSNVVQAAKKN-NVGRFVYFQTALCYGVKPIQQPV----- 150 (333)
T ss_dssp HHHHHHHHHHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGCSCCCSSSB-----
T ss_pred HHHHHHHhccCCcEEEECceecCCCccCChH--HHHHHHHHHHHHHHHHHh-CCCEEEEECcHHHhCCCcccCCC-----
Confidence 788888876 99999999986652 3333 899999999999999984 789999999999987 3211
Q ss_pred ccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcccc
Q 042694 256 PFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGW 335 (554)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~ 335 (554)
++++.+ . +... .|..+|..+|.++... .. +++++||+.+||+... .++
T Consensus 151 ~~~E~~--~------------p~~~------------~Y~~sK~~~E~~~~~s---~~-~~~ilR~~~v~gp~~~--~~~ 198 (333)
T 2q1w_A 151 RLDHPR--N------------PANS------------SYAISKSANEDYLEYS---GL-DFVTFRLANVVGPRNV--SGP 198 (333)
T ss_dssp CTTSCC--C------------CTTC------------HHHHHHHHHHHHHHHH---TC-CEEEEEESEEESTTCC--SSH
T ss_pred CcCCCC--C------------CCCC------------chHHHHHHHHHHHHhh---hC-CeEEEeeceEECcCCc--CcH
Confidence 222111 0 0001 1222344444444330 22 8999999999997631 111
Q ss_pred ccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHH
Q 042694 336 MEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLH 415 (554)
Q Consensus 336 ~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~ 415 (554)
+.. ++.....|. . +++ ++...++++++|+|++++.++.... +++||++++ .++++.|+++.+.
T Consensus 199 ~~~------~~~~~~~~~-~-~~~-~~~~~~~i~v~Dva~ai~~~~~~~~------g~~~~v~~~--~~~s~~e~~~~i~ 261 (333)
T 2q1w_A 199 LPI------FFQRLSEGK-K-CFV-TKARRDFVFVKDLARATVRAVDGVG------HGAYHFSSG--TDVAIKELYDAVV 261 (333)
T ss_dssp HHH------HHHHHHTTC-C-CEE-EECEECEEEHHHHHHHHHHHHTTCC------CEEEECSCS--CCEEHHHHHHHHH
T ss_pred HHH------HHHHHHcCC-e-eeC-CCceEeeEEHHHHHHHHHHHHhcCC------CCEEEeCCC--CCccHHHHHHHHH
Confidence 111 111111222 1 223 3456899999999999998875422 589999998 7899999999999
Q ss_pred hHhccC
Q 042694 416 EHYSAS 421 (554)
Q Consensus 416 ~~~~~~ 421 (554)
+.+|..
T Consensus 262 ~~~g~~ 267 (333)
T 2q1w_A 262 EAMALP 267 (333)
T ss_dssp HHTTCS
T ss_pred HHhCCC
Confidence 999875
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=221.59 Aligned_cols=263 Identities=16% Similarity=0.081 Sum_probs=175.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCC----ccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPD----VGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~----V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+++|+|||||||||||++|+++|++.+.. +.+|+++++... ... .....++.++.+|++++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~-----~~~----~~~~~~~~~~~~Dl~d~------ 76 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQP-----EAP----AGFSGAVDARAADLSAP------ 76 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCC-----CCC----TTCCSEEEEEECCTTST------
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCC-----ccc----cccCCceeEEEcCCCCH------
Confidence 56889999999999999999999998720 125666553210 000 01235788999999998
Q ss_pred HHHHHHh-cCccEEEEcCCCCCc--hhhHHHHHHHhchHHHHHHHHHHHcC----CCceEEEEeeceecccccceeeccc
Q 042694 184 DLADVIA-KEVDVIVNSAANTTF--DERYDIAIDINTRGPCRLMEFAKQCN----KLKLFVQVSTAYVNGQRRGKVMEKP 256 (554)
Q Consensus 184 ~~~~~l~-~~vdiViH~AA~v~~--~~~~~~~~~~Nv~gt~~ll~la~~~~----~~k~~v~vST~~v~~~~~~~i~E~~ 256 (554)
+.++.++ .++|+|||+||.... .+++...+++|+.||.+++++|++.+ ++++|||+||.++++... ..+
T Consensus 77 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~----~~~ 152 (342)
T 2hrz_A 77 GEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPL----PYP 152 (342)
T ss_dssp THHHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSC----CSS
T ss_pred HHHHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCC----CCC
Confidence 7777777 489999999997653 34677889999999999999998853 378999999999988632 112
Q ss_pred cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee-cccCCcccc
Q 042694 257 FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES-TCKEPFSGW 335 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g-~~~~p~~g~ 335 (554)
+++.++. .+.. .|..+|..+|.++..+....+++.+++|++.|+| +.. +...
T Consensus 153 ~~E~~~~-------------~~~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~-~~~~- 205 (342)
T 2hrz_A 153 IPDEFHT-------------TPLT------------SYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGK-PNAA- 205 (342)
T ss_dssp BCTTCCC-------------CCSS------------HHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSS-CCCS-
T ss_pred cCCCCCC-------------CCcc------------hHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCC-Ccch-
Confidence 2222110 1111 2334456667766665555689999999999997 322 1000
Q ss_pred ccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHH
Q 042694 336 MEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLH 415 (554)
Q Consensus 336 ~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~ 415 (554)
... ....++.....|....++.+++...++++++|+|++++.++...... ...+++||+++ .++++.|+++.+.
T Consensus 206 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~~~~-~~~~~~~ni~g---~~~s~~e~~~~i~ 279 (342)
T 2hrz_A 206 ASG--FFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVEK-VGPRRNLSMPG---LSATVGEQIEALR 279 (342)
T ss_dssp GGG--HHHHHHHHHHTTCCEEECSCTTCEEEEECHHHHHHHHHHHHHSCHHH-HCSCCEEECCC---EEEEHHHHHHHHH
T ss_pred hHH--HHHHHHHHHhcCCCeeccCCCccceeeEehHHHHHHHHHHHhccccc-cCCccEEEcCC---CCCCHHHHHHHHH
Confidence 000 01111111122333234445566778999999999999887643210 01247999954 4799999999999
Q ss_pred hHhccCC
Q 042694 416 EHYSASP 422 (554)
Q Consensus 416 ~~~~~~p 422 (554)
+.+|..+
T Consensus 280 ~~~g~~~ 286 (342)
T 2hrz_A 280 KVAGEKA 286 (342)
T ss_dssp HHHCHHH
T ss_pred HHcCccc
Confidence 9988754
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-25 Score=219.42 Aligned_cols=232 Identities=18% Similarity=0.199 Sum_probs=161.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|+++|+ +++ +|+++++.. ..+.+|+.++ +.+..++
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~---~V~~~~r~~--------------------~~~~~D~~d~------~~~~~~~ 50 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVG---NLIALDVHS--------------------KEFCGDFSNP------KGVAETV 50 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTS---EEEEECTTC--------------------SSSCCCTTCH------HHHHHHH
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCC---eEEEecccc--------------------ccccccCCCH------HHHHHHH
Confidence 479999999999999999999 675 566665421 1257899877 7777777
Q ss_pred cC--ccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 191 KE--VDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 191 ~~--vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
++ +|+|||+||.... ..+++..+++|+.||.+++++|++. +. +|||+||.++|+...+ .++.+.++.
T Consensus 51 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~vy~~~~~----~~~~E~~~~-- 122 (299)
T 1n2s_A 51 RKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-GA-WVVHYSTDYVFPGTGD----IPWQETDAT-- 122 (299)
T ss_dssp HHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-TC-EEEEEEEGGGSCCCTT----CCBCTTSCC--
T ss_pred HhcCCCEEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEecccEEeCCCC----CCCCCCCCC--
Confidence 65 9999999998764 3567889999999999999999884 55 7999999999986431 222222211
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
.+.. .|..+|..+|.++... ..+++|+||+.|||+... +++. .+
T Consensus 123 -----------~p~~------------~Y~~sK~~~E~~~~~~----~~~~~ilRp~~v~G~~~~---~~~~------~~ 166 (299)
T 1n2s_A 123 -----------SPLN------------VYGKTKLAGEKALQDN----CPKHLIFRTSWVYAGKGN---NFAK------TM 166 (299)
T ss_dssp -----------CCSS------------HHHHHHHHHHHHHHHH----CSSEEEEEECSEECSSSC---CHHH------HH
T ss_pred -----------CCcc------------HHHHHHHHHHHHHHHh----CCCeEEEeeeeecCCCcC---cHHH------HH
Confidence 1111 1222344444444432 348999999999997653 2211 11
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCC-CCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKP-DINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~-~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
+.....|......+ +...++++++|+|++++.++..... .. .+++||++++ +++++.|+++.+.+.+|..+
T Consensus 167 ~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~~--~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~~~ 238 (299)
T 1n2s_A 167 LRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAIRVALN--KPEVAGLYHLVAG--GTTTWHDYAALVFDEARKAG 238 (299)
T ss_dssp HHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHHHHHHH--CGGGCEEEECCCB--SCEEHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCEEeec--CcccCCeeHHHHHHHHHHHHHHhcc--ccccCceEEEeCC--CCCCHHHHHHHHHHHhCCCc
Confidence 11111222212223 3678999999999999998876421 00 1479999998 78999999999999998764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=217.57 Aligned_cols=240 Identities=13% Similarity=0.107 Sum_probs=142.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|||||||||||++|+++|++.++ +|+++++..- . .+ ++.+|++++ +.+..+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~-----~----------~~--~~~~Dl~d~------~~~~~~ 55 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNW---HAVGCGFRRA-----R----------PK--FEQVNLLDS------NAVHHI 55 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEC-----------------------------------------CHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC---eEEEEccCCC-----C----------CC--eEEecCCCH------HHHHHH
Confidence 57899999999999999999999875 5666653210 0 12 578999987 666666
Q ss_pred hc--CccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 190 AK--EVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 190 ~~--~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
++ ++|+|||+||.... ..+++..+++|+.||.+++++|.+. +. +|||+||.++++.... ++++.++.
T Consensus 56 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~~~~~~-----~~~E~~~~- 127 (315)
T 2ydy_A 56 IHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV-GA-FLIYISSDYVFDGTNP-----PYREEDIP- 127 (315)
T ss_dssp HHHHCCSEEEECC-------------------CHHHHHHHHHHHHH-TC-EEEEEEEGGGSCSSSC-----SBCTTSCC-
T ss_pred HHhhCCCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchHHHcCCCCC-----CCCCCCCC-
Confidence 65 59999999998654 3467788999999999999999985 55 9999999999886322 22222110
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
.+.. .|..+|..+|......+++++++||+.|||+...+..+++..
T Consensus 128 ------------~~~~----------------~Y~~sK~~~e~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~------ 173 (315)
T 2ydy_A 128 ------------APLN----------------LYGKTKLDGEKAVLENNLGAAVLRIPILYGEVEKLEESAVTV------ 173 (315)
T ss_dssp ------------CCCS----------------HHHHHHHHHHHHHHHHCTTCEEEEECSEECSCSSGGGSTTGG------
T ss_pred ------------CCcC----------------HHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCcccccHHHH------
Confidence 1111 123334444444333367899999999999766421122211
Q ss_pred eeeeec-cceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 345 IILYYG-KGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 345 i~~~~~-~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
++.... .|..... .++...++++++|+|++++.++..... ....+++||++++ .++++.|+++.+.+.+|..+
T Consensus 174 ~~~~~~~~~~~~~~--~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~~~ 247 (315)
T 2ydy_A 174 MFDKVQFSNKSANM--DHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTFHWSGN--EQMTKYEMACAIADAFNLPS 247 (315)
T ss_dssp GHHHHHCCSSCEEE--ECSSBBCCEEHHHHHHHHHHHHHHHHT-CTTCCEEEECCCS--CCBCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhcCCCeee--ccCceECcEEHHHHHHHHHHHHHhhcc-ccCCCCeEEEcCC--CcccHHHHHHHHHHHhCCCh
Confidence 111111 2221112 235678999999999999988765310 0123589999998 78999999999999998764
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-25 Score=227.06 Aligned_cols=257 Identities=14% Similarity=0.054 Sum_probs=173.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH----HHHHHHcCCchhhhccC-cEEEEEccCCCCCCCCCHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF----KCLKQTYGKSYQAFMLS-KLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~----~~l~~~~~~~~~~~~~~-kv~~v~GDl~~~~lGLs~~~ 185 (554)
++|||||||||||++|+++|++.++ +|+++++..- +++...... . ..... ++.++.+|++++ +.
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~Dl~d~------~~ 97 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGY---EVHGLIRRSSNFNTQRINHIYID-P-HNVNKALMKLHYADLTDA------SS 97 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSSCCCTTTTTTC----------CCEEEEECCTTCH------HH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCC---EEEEEecCCccccchhhhhhhhc-c-ccccccceEEEECCCCCH------HH
Confidence 6899999999999999999999876 4555543210 001000000 0 00012 788999999987 77
Q ss_pred HHHHhcC--ccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCc-----eEEEEeeceecccccceeecc
Q 042694 186 ADVIAKE--VDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLK-----LFVQVSTAYVNGQRRGKVMEK 255 (554)
Q Consensus 186 ~~~l~~~--vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k-----~~v~vST~~v~~~~~~~i~E~ 255 (554)
+..++++ +|+|||+||..... +.+...+++|+.||.+++++|.+. +++ +|||+||.++|+...+
T Consensus 98 ~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~~~~~~v~~SS~~vyg~~~~----- 171 (381)
T 1n7h_A 98 LRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH-TIDSGRTVKYYQAGSSEMFGSTPP----- 171 (381)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHH-HHHHCCCCEEEEEEEGGGGTTSCS-----
T ss_pred HHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCccCCccEEEEeCcHHHhCCCCC-----
Confidence 7777764 79999999987753 467788999999999999999984 555 9999999999987432
Q ss_pred ccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcccc
Q 042694 256 PFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGW 335 (554)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~ 335 (554)
++++.++. .+.. .|..+|..+|.++..+....+++++++|++.+||+...+ ++
T Consensus 172 ~~~E~~~~-------------~~~~------------~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~--~~ 224 (381)
T 1n7h_A 172 PQSETTPF-------------HPRS------------PYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGE--NF 224 (381)
T ss_dssp SBCTTSCC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCT--TS
T ss_pred CCCCCCCC-------------CCCC------------chHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCC--cc
Confidence 22222211 1111 233445666666665544458999999999999975421 11
Q ss_pred ccCCCCccceeeeeccce-eeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHH
Q 042694 336 MEGNRMMDPIILYYGKGQ-LTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLL 414 (554)
Q Consensus 336 ~~~~~~~~~i~~~~~~G~-~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~ 414 (554)
... .....+..+..|. .....++++...++++|+|+|++++.++.... .++||++++ .++++.|+++.+
T Consensus 225 ~~~--~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~------~~~~~i~~~--~~~s~~e~~~~i 294 (381)
T 1n7h_A 225 VTR--KITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEK------PDDYVVATE--EGHTVEEFLDVS 294 (381)
T ss_dssp HHH--HHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSS------CCEEEECCS--CEEEHHHHHHHH
T ss_pred hhH--HHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHHHHHHHHhCCC------CCeEEeeCC--CCCcHHHHHHHH
Confidence 100 0001111111222 12234666778999999999999998875422 379999998 799999999999
Q ss_pred HhHhccC
Q 042694 415 HEHYSAS 421 (554)
Q Consensus 415 ~~~~~~~ 421 (554)
.+.+|..
T Consensus 295 ~~~~g~~ 301 (381)
T 1n7h_A 295 FGYLGLN 301 (381)
T ss_dssp HHHTTCC
T ss_pred HHHcCCC
Confidence 9999864
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=242.78 Aligned_cols=269 Identities=13% Similarity=0.085 Sum_probs=176.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---h---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---L---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
.++|+|||||||||||++|+++|++.+. +|+++++. . .+++... ...++.++.+|++++
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~l~~~--------~~~~v~~v~~Dl~d~---- 73 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENGY---DCVVADNLSNSTYDSVARLEVL--------TKHHIPFYEVDLCDR---- 73 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCTHHHHHHHHH--------HTSCCCEEECCTTCH----
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCCcchHHHHHHHhhc--------cCCceEEEEcCCCCH----
Confidence 5678999999999999999999999875 45555421 1 1122111 124678899999987
Q ss_pred CHHHHHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccc
Q 042694 182 EEDLADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKP 256 (554)
Q Consensus 182 s~~~~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~ 256 (554)
+.+..+++ ++|+|||+||..... +...+.+++|+.|+.+++++|++. ++++|||+||.++++.....-...+
T Consensus 74 --~~l~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~iV~~SS~~vyg~~~~~~~~~~ 150 (699)
T 1z45_A 74 --KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSATVYGDATRFPNMIP 150 (699)
T ss_dssp --HHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCCGGGSTTCCS
T ss_pred --HHHHHHHHhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECcHHHhCCCccccccCC
Confidence 77887777 899999999987643 345678999999999999999984 7899999999999876321000011
Q ss_pred cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc--CCCcEEEEccceeeecccCCccc
Q 042694 257 FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER--GDIPVVIIRPSVIESTCKEPFSG 334 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~--~glp~~I~Rp~~V~g~~~~p~~g 334 (554)
+++..+ ..+.. .|..+|..+|.++..+... .+++++|+||+.|||+....+.|
T Consensus 151 ~~E~~~-------------~~p~~------------~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g 205 (699)
T 1z45_A 151 IPEECP-------------LGPTN------------PYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIG 205 (699)
T ss_dssp BCTTSC-------------CCCCS------------HHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCC
T ss_pred ccccCC-------------CCCCC------------hHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccc
Confidence 111111 01111 2333455666666554433 68999999999999975432211
Q ss_pred cccC--CCCccceeeee--ccc-eeeeeec------CCCcccccchhhHHHHHHHHHHHHhcc--cCCCCCeEEEeeCCC
Q 042694 335 WMEG--NRMMDPIILYY--GKG-QLTGFLV------DPNGILDVVPADMVVNATLAAIAQHGM--IQKPDINVYQIASSV 401 (554)
Q Consensus 335 ~~~~--~~~~~~i~~~~--~~G-~~~~~~~------~~~~~~d~vpVD~va~aii~~~~~~~~--~~~~~~~vyn~~~~~ 401 (554)
-... .....+.+... +.+ .+. +++ +++...++|||||+|++++.++..... .....+++||++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~- 283 (699)
T 1z45_A 206 EDPLGIPNNLLPYMAQVAVGRREKLY-IFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSG- 283 (699)
T ss_dssp CCCSSSCCSHHHHHHHHHTTSSSCCC-CC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCS-
T ss_pred cccccchhHHHHHHHHHHhcCCCceE-EeCCcccCCCCCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCC-
Confidence 1000 00011111111 111 221 222 567789999999999999998765321 01112479999998
Q ss_pred CCcccHHHHHHHHHhHhccCC
Q 042694 402 VNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 402 ~~~it~~e~~~~~~~~~~~~p 422 (554)
+++++.|+++.+.+.+|..+
T Consensus 284 -~~~s~~el~~~i~~~~g~~~ 303 (699)
T 1z45_A 284 -KGSTVFEVYHAFCKASGIDL 303 (699)
T ss_dssp -CCEEHHHHHHHHHHHHTCCC
T ss_pred -CCCcHHHHHHHHHHHhCCCC
Confidence 78999999999999998753
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-25 Score=243.24 Aligned_cols=272 Identities=15% Similarity=0.184 Sum_probs=180.6
Q ss_pred hccCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..++++|||||||||||++|+++|++. ++ +|+++++... .+.. . ....++.++.||++++ ++.
T Consensus 312 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~g~---~V~~~~r~~~-~~~~-~------~~~~~v~~v~~Dl~d~-----~~~ 375 (660)
T 1z7e_A 312 ARRRTRVLILGVNGFIGNHLTERLLREDHY---EVYGLDIGSD-AISR-F------LNHPHFHFVEGDISIH-----SEW 375 (660)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHHHSSSE---EEEEEESCCT-TTGG-G------TTCTTEEEEECCTTTC-----HHH
T ss_pred hccCceEEEEcCCcHHHHHHHHHHHhcCCC---EEEEEEcCch-hhhh-h------ccCCceEEEECCCCCc-----HHH
Confidence 356889999999999999999999986 44 5666653211 0000 0 0135789999999987 234
Q ss_pred HHHHhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCC
Q 042694 186 ADVIAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
++.+.+++|+|||+||.... ..++...+++|+.||.+++++|++. + ++|||+||.++++...+ .++++.++
T Consensus 376 ~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~-~r~V~~SS~~vyg~~~~----~~~~E~~~ 449 (660)
T 1z7e_A 376 IEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSEVYGMCSD----KYFDEDHS 449 (660)
T ss_dssp HHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGGGGBTCCS----SSBCTTTC
T ss_pred HHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHh-C-CEEEEEecHHHcCCCCC----cccCCCcc
Confidence 67777899999999998763 3567889999999999999999985 5 89999999999886421 12222221
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC-CCC
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG-NRM 341 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~-~~~ 341 (554)
..... +.... .. .|..+|+.+|.++..+....|++++++||+.|||+...+...+..+ ...
T Consensus 450 ~~~~~---------p~~~p---~~------~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~ 511 (660)
T 1z7e_A 450 NLIVG---------PVNKP---RW------IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRA 511 (660)
T ss_dssp CEEEC---------CTTCT---TH------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCH
T ss_pred ccccC---------cccCC---CC------CcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccch
Confidence 00000 00000 01 2334466677766655444589999999999999876432110000 000
Q ss_pred ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCC-cccHHHHHHHHHhHhcc
Q 042694 342 MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVN-PLVFQDLARLLHEHYSA 420 (554)
Q Consensus 342 ~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~-~it~~e~~~~~~~~~~~ 420 (554)
...++..+..|....++++++...++++|+|+|++++.++..... ...+++||++++ . ++++.|+++.+.+.+|.
T Consensus 512 ~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~--~~~g~~~ni~~~--~~~~s~~el~~~i~~~~g~ 587 (660)
T 1z7e_A 512 ITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGN--RCDGEIINIGNP--ENEASIEELGEMLLASFEK 587 (660)
T ss_dssp HHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHHHHHHCGGG--TTTTEEEEECCG--GGEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHHHHHhCccc--cCCCeEEEECCC--CCCcCHHHHHHHHHHHhcC
Confidence 111111122233333446677889999999999999998865321 123589999987 5 89999999999999987
Q ss_pred CC
Q 042694 421 SP 422 (554)
Q Consensus 421 ~p 422 (554)
.+
T Consensus 588 ~~ 589 (660)
T 1z7e_A 588 HP 589 (660)
T ss_dssp CT
T ss_pred CC
Confidence 54
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-25 Score=222.51 Aligned_cols=258 Identities=17% Similarity=0.154 Sum_probs=159.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-hh-----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-EL-----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~~-----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
||+|||||||||||++|+++|+++|++ |+++.+ .. ...+. ..+. ...++.++.||++++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~Dl~d~------ 65 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYS---VNTTIRADPERKRDVSFLT-NLPG-----ASEKLHFFNADLSNP------ 65 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE---EEEECCCC----CCCHHHH-TSTT-----HHHHEEECCCCTTCG------
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCE---EEEEEeCCccchhHHHHHH-hhhc-----cCCceEEEecCCCCH------
Confidence 578999999999999999999998864 444332 11 11111 0100 113678899999988
Q ss_pred HHHHHHhcCccEEEEcCCCCCchh--hHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCC
Q 042694 184 DLADVIAKEVDVIVNSAANTTFDE--RYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGD 261 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~~~~--~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~ 261 (554)
+.++.+++++|+|||+|+.+.+.. +.+.++++|+.||.+++++|.+..++++|||+||.+++..... .+.++.+.+
T Consensus 66 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~--~~~~~~e~~ 143 (322)
T 2p4h_X 66 DSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGK--DKDVLDESD 143 (322)
T ss_dssp GGGHHHHTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSS--CCSEECTTC
T ss_pred HHHHHHHcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCC--CCeecCCcc
Confidence 788888899999999998765432 2445899999999999999987536899999999875432111 011122111
Q ss_pred CcccccccccccCCCCCCChHHHHHHhhhcc-CCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC-ccccccCC
Q 042694 262 SIAKENFVSNSRRLIPTLDVENEMKLALESK-EFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP-FSGWMEGN 339 (554)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k-~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p-~~g~~~~~ 339 (554)
. .+.. ......... .|..+|..+|.++..+....|++++++||+.|||+...+ .+.+..
T Consensus 144 ~----------------~~~~-~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~-- 204 (322)
T 2p4h_X 144 W----------------SDVD-LLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIE-- 204 (322)
T ss_dssp C----------------CCHH-HHHHHCCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHH--
T ss_pred c----------------cchh-hhcccCcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHH--
Confidence 0 0000 000000000 144455667776655544568999999999999976532 111110
Q ss_pred CCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhc
Q 042694 340 RMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYS 419 (554)
Q Consensus 340 ~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~ 419 (554)
. +.....|....+ ++ ...++++|+|+|++++.++.... ..+ .|| +++ .++++.|+++.+.+.++
T Consensus 205 ----~-~~~~~~g~~~~~-~~--~~~~~i~v~Dva~a~~~~~~~~~----~~g-~~~-~~~--~~~s~~e~~~~i~~~~~ 268 (322)
T 2p4h_X 205 ----K-ALVLVLGKKEQI-GV--TRFHMVHVDDVARAHIYLLENSV----PGG-RYN-CSP--FIVPIEEMSQLLSAKYP 268 (322)
T ss_dssp ----H-HTHHHHSCGGGC-CE--EEEEEEEHHHHHHHHHHHHHSCC----CCE-EEE-CCC--EEEEHHHHHHHHHHHCT
T ss_pred ----H-HHHHHhCCCccC-cC--CCcCEEEHHHHHHHHHHHhhCcC----CCC-CEE-EcC--CCCCHHHHHHHHHHhCC
Confidence 0 000001111111 11 23489999999999998875422 123 588 455 58999999999988764
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-24 Score=212.69 Aligned_cols=225 Identities=16% Similarity=0.203 Sum_probs=159.1
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
..++|||||||||||++|+++|++++. +|+++++. .+|++++ +.+..
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~------------------------~~Dl~d~------~~~~~ 57 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNV---EVIPTDVQ------------------------DLDITNV------LAVNK 57 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSE---EEEEECTT------------------------TCCTTCH------HHHHH
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCC---eEEeccCc------------------------cCCCCCH------HHHHH
Confidence 357999999999999999999998775 56665532 3688876 77777
Q ss_pred Hhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCc
Q 042694 189 IAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSI 263 (554)
Q Consensus 189 l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~ 263 (554)
+++ ++|+|||+||..... ++++..+++|+.|+.+++++|++. +. +|||+||.++++... ..++++.++.
T Consensus 58 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~-~iv~~SS~~v~~~~~----~~~~~E~~~~ 131 (292)
T 1vl0_A 58 FFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-GA-EIVQISTDYVFDGEA----KEPITEFDEV 131 (292)
T ss_dssp HHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGSCSCC----SSCBCTTSCC
T ss_pred HHHhcCCCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEechHHeECCCC----CCCCCCCCCC
Confidence 777 799999999987653 567889999999999999999985 56 999999999988642 1222222210
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
.+.. .|..+|..+|.++.. .+.+++++||+.|||+ .. +++..
T Consensus 132 -------------~~~~------------~Y~~sK~~~E~~~~~----~~~~~~~lR~~~v~G~-~~---~~~~~----- 173 (292)
T 1vl0_A 132 -------------NPQS------------AYGKTKLEGENFVKA----LNPKYYIVRTAWLYGD-GN---NFVKT----- 173 (292)
T ss_dssp -------------CCCS------------HHHHHHHHHHHHHHH----HCSSEEEEEECSEESS-SS---CHHHH-----
T ss_pred -------------CCcc------------HHHHHHHHHHHHHHh----hCCCeEEEeeeeeeCC-Cc---ChHHH-----
Confidence 1111 122233444444433 3457999999999997 32 22211
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
++.....|......+ +...++++++|+|++++.++... .+++||++++ .++++.|+++.+.+.+|..
T Consensus 174 -~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~------~~~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 240 (292)
T 1vl0_A 174 -MINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEK------NYGTFHCTCK--GICSWYDFAVEIFRLTGID 240 (292)
T ss_dssp -HHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHT------CCEEEECCCB--SCEEHHHHHHHHHHHHCCC
T ss_pred -HHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhcC------CCcEEEecCC--CCccHHHHHHHHHHHhCCC
Confidence 111111122112222 45689999999999999988763 2479999998 7899999999999999865
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-25 Score=230.71 Aligned_cols=216 Identities=16% Similarity=0.076 Sum_probs=163.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccC-CCCCCCCCHHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNV-CENNLGLEEDLADVI 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl-~~~~lGLs~~~~~~l 189 (554)
|+|||||||||||++|+++|++++. + .++.+|+ .+ .+.+..+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~-~------------------------------~v~~~d~~~d------~~~l~~~ 43 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTD-H------------------------------HIFEVHRQTK------EEELESA 43 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC-C------------------------------EEEECCTTCC------HHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-C------------------------------EEEEECCCCC------HHHHHHH
Confidence 5799999999999999999999875 1 2355566 44 4888888
Q ss_pred hcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCc-eEEEEeeceecccccceeeccccCCCCCcccccc
Q 042694 190 AKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLK-LFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENF 268 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~ 268 (554)
++++|+|||+||..+. +.+..+.++|+.++.+++++|++. +++ +|||+||.++++..
T Consensus 44 ~~~~d~Vih~a~~~~~-~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~Ss~~~~~~~-------------------- 101 (369)
T 3st7_A 44 LLKADFIVHLAGVNRP-EHDKEFSLGNVSYLDHVLDILTRN-TKKPAILLSSSIQATQDN-------------------- 101 (369)
T ss_dssp HHHCSEEEECCCSBCT-TCSTTCSSSCCBHHHHHHHHHTTC-SSCCEEEEEEEGGGGSCS--------------------
T ss_pred hccCCEEEECCcCCCC-CCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeCchhhcCCC--------------------
Confidence 8999999999998764 345667889999999999999985 666 99999999887621
Q ss_pred cccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcc-ccccCCCCccceee
Q 042694 269 VSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFS-GWMEGNRMMDPIIL 347 (554)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~-g~~~~~~~~~~i~~ 347 (554)
.|..+|..+|.+++.+.++.|++++|+||+.|||+...|.. +++ ..++.
T Consensus 102 ------------------------~Y~~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~------~~~~~ 151 (369)
T 3st7_A 102 ------------------------PYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVI------ATFCY 151 (369)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHH------HHHHH
T ss_pred ------------------------CchHHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHH------HHHHH
Confidence 23334666777776655556899999999999998765421 111 11111
Q ss_pred eeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 348 YYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 348 ~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
.+..|.... ..+++...+++|+||+|++++.++...... .+++||++++ +++|+.|+++.+.+.+|..
T Consensus 152 ~~~~~~~~~-~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~---~~~~~~i~~~--~~~s~~e~~~~~~~~~g~~ 219 (369)
T 3st7_A 152 KIARNEEIQ-VNDRNVELTLNYVDDIVAEIKRAIEGTPTI---ENGVPTVPNV--FKVTLGEIVDLLYKFKQSR 219 (369)
T ss_dssp HHHTTCCCC-CSCTTCEEEEEEHHHHHHHHHHHHHTCCCE---ETTEECCSCC--EEEEHHHHHHHHHHHHHHH
T ss_pred HHHcCCCeE-ecCCCeEEEEEEHHHHHHHHHHHHhCCccc---CCceEEeCCC--CceeHHHHHHHHHHHhCCC
Confidence 122232222 246788899999999999999988764321 1479999998 7999999999999998875
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-24 Score=215.60 Aligned_cols=232 Identities=13% Similarity=0.100 Sum_probs=152.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|+++|+++|++| +++.+. +. ..+ +..| +......
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V---~~l~R~---------~~------~~~---~~~~----------~~~~~~l 49 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEV---TLVSRK---------PG------PGR---ITWD----------ELAASGL 49 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEE---EEEESS---------CC------TTE---EEHH----------HHHHHCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEE---EEEECC---------CC------cCe---eecc----------hhhHhhc
Confidence 579999999999999999999999865 443321 00 011 1112 2223334
Q ss_pred cCccEEEEcCCCC--C----ch-hhHHHHHHHhchHHHHHHHHHHHcC-CCceEEEEeeceecccccceeeccccCCCCC
Q 042694 191 KEVDVIVNSAANT--T----FD-ERYDIAIDINTRGPCRLMEFAKQCN-KLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 191 ~~vdiViH~AA~v--~----~~-~~~~~~~~~Nv~gt~~ll~la~~~~-~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
+++|+|||+|+.. . +. ...+..++.|+.+|++|+++++..+ +.+.|++.||+++|+...+ .+..|+.+
T Consensus 50 ~~~d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~----~~~~E~~p 125 (298)
T 4b4o_A 50 PSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLT----AEYDEDSP 125 (298)
T ss_dssp CSCSEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSS----CCBCTTCC
T ss_pred cCCCEEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCC----CcccccCC
Confidence 7899999999742 1 22 3446788999999999999998753 3456999999999997532 22222211
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCc
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMM 342 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~ 342 (554)
. .+.+...... ...| .+......+++++++||+.|||+.. ++...
T Consensus 126 ~-------------~~~~~~~~~~------------~~~e--~~~~~~~~~~~~~~~r~~~v~g~~~----~~~~~---- 170 (298)
T 4b4o_A 126 G-------------GDFDFFSNLV------------TKWE--AAARLPGDSTRQVVVRSGVVLGRGG----GAMGH---- 170 (298)
T ss_dssp C-------------SCSSHHHHHH------------HHHH--HHHCCSSSSSEEEEEEECEEECTTS----HHHHH----
T ss_pred c-------------cccchhHHHH------------HHHH--HHHHhhccCCceeeeeeeeEEcCCC----CchhH----
Confidence 0 1111111111 1111 1222234689999999999999764 22211
Q ss_pred cceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 343 DPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 343 ~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
+......|... ..++++..+++|||||+|++++.++..+.. ..+||++++ +++|+.|+++.+.+.+|+++
T Consensus 171 --~~~~~~~~~~~-~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~-----~g~yn~~~~--~~~t~~e~~~~ia~~lgrp~ 240 (298)
T 4b4o_A 171 --MLLPFRLGLGG-PIGSGHQFFPWIHIGDLAGILTHALEANHV-----HGVLNGVAP--SSATNAEFAQTFGAALGRRA 240 (298)
T ss_dssp --HHHHHHTTCCC-CBTTSCSBCCEEEHHHHHHHHHHHHHCTTC-----CEEEEESCS--CCCBHHHHHHHHHHHHTCCC
T ss_pred --HHHHHhcCCcc-eecccCceeecCcHHHHHHHHHHHHhCCCC-----CCeEEEECC--CccCHHHHHHHHHHHhCcCC
Confidence 11111122222 237788899999999999999998876432 369999999 89999999999999999753
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=221.94 Aligned_cols=257 Identities=16% Similarity=0.180 Sum_probs=161.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEE-Ecchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFI-INAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~-~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+|+|||||||||||++|+++|++.|++| ++ .++.. ...+.. .+ ...++.++.+|++++ +
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V---~~~~r~~~~~~~~~~~~~-~~------~~~~~~~~~~Dl~d~------~ 72 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAV---NTTVRDPDNQKKVSHLLE-LQ------ELGDLKIFRADLTDE------L 72 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEE---EEEESCTTCTTTTHHHHH-HG------GGSCEEEEECCTTTS------S
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEE---EEEEcCcchhhhHHHHHh-cC------CCCcEEEEecCCCCh------H
Confidence 6899999999999999999999988754 33 22211 111111 10 124688999999988 6
Q ss_pred HHHHHhcCccEEEEcCCCCCch--hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee-ccccc-c---eeecccc
Q 042694 185 LADVIAKEVDVIVNSAANTTFD--ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV-NGQRR-G---KVMEKPF 257 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v-~~~~~-~---~i~E~~~ 257 (554)
.+..+++++|+|||+||.+.+. .+.++.+++|+.||.+++++|++.+++++|||+||..+ ++... + .++|...
T Consensus 73 ~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~ 152 (338)
T 2rh8_A 73 SFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNW 152 (338)
T ss_dssp SSHHHHTTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTT
T ss_pred HHHHHHcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhc
Confidence 7777788999999999977543 22345889999999999999998534899999999874 33210 0 1222211
Q ss_pred CCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC-ccccc
Q 042694 258 CMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP-FSGWM 336 (554)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p-~~g~~ 336 (554)
... +...... .....|..+|..+|.++..+.+..|++++++||+.|||+...+ .+..+
T Consensus 153 ~~~-------------------~~~~~~~--~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~ 211 (338)
T 2rh8_A 153 TDI-------------------EFLTSAK--PPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSI 211 (338)
T ss_dssp TCC----------------------------CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHH
T ss_pred cch-------------------hhccccC--CccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchH
Confidence 100 0000000 0000377888888988776654458999999999999986532 11111
Q ss_pred cCCCCccceeeeeccceeeeeecC------CCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHH
Q 042694 337 EGNRMMDPIILYYGKGQLTGFLVD------PNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDL 410 (554)
Q Consensus 337 ~~~~~~~~i~~~~~~G~~~~~~~~------~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~ 410 (554)
. . +.....|....+ ++ +....++++|+|+|++++.++.... ....|+++++ .+++.|+
T Consensus 212 ~------~-~~~~~~g~~~~~-~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-----~~~~~~~~~~---~~s~~e~ 275 (338)
T 2rh8_A 212 G------L-AMSLITGNEFLI-NGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKES-----ASGRYICCAA---NTSVPEL 275 (338)
T ss_dssp H------H-HHHHHHTCHHHH-HHHHHHHHHHSSEEEEEHHHHHHHHHHHHHCTT-----CCEEEEECSE---EECHHHH
T ss_pred H------H-HHHHHcCCcccc-ccccccccccCcccEEEHHHHHHHHHHHHcCCC-----cCCcEEEecC---CCCHHHH
Confidence 0 0 000001100000 00 1123489999999999998875422 1357888764 6899999
Q ss_pred HHHHHhHhc
Q 042694 411 ARLLHEHYS 419 (554)
Q Consensus 411 ~~~~~~~~~ 419 (554)
++.+.+.++
T Consensus 276 ~~~l~~~~~ 284 (338)
T 2rh8_A 276 AKFLSKRYP 284 (338)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCC
Confidence 999998765
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-24 Score=216.62 Aligned_cols=261 Identities=16% Similarity=0.162 Sum_probs=159.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEE-Ecc-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFI-INA-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~-~~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++|||||||||||++|+++|+++|++| ++ .++ ....++...... .. ...++.++.||++++ +.+
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V---~~~~r~~~~~~~~~~~~~~--~~-~~~~~~~~~~Dl~d~------~~~ 71 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTV---RATVRDPTNVKKVKHLLDL--PK-AETHLTLWKADLADE------GSF 71 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEE---EEEESCTTCHHHHHHHHTS--TT-HHHHEEEEECCTTST------TTT
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEE---EEEECCcchhHHHHHHHhc--cc-CCCeEEEEEcCCCCH------HHH
Confidence 46899999999999999999999988754 43 222 211222211110 00 113688899999988 777
Q ss_pred HHHhcCccEEEEcCCCCCch--hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee-ccccc--ceeeccccCCCC
Q 042694 187 DVIAKEVDVIVNSAANTTFD--ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV-NGQRR--GKVMEKPFCMGD 261 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v-~~~~~--~~i~E~~~~~~~ 261 (554)
..+++++|+|||+||...+. ++.+..+++|+.||.+++++|.+..++++|||+||..+ ++... ..++|....
T Consensus 72 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~--- 148 (337)
T 2c29_D 72 DEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWS--- 148 (337)
T ss_dssp HHHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCC---
T ss_pred HHHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCC---
Confidence 78888999999999976542 33456899999999999999998544899999999874 33211 112222110
Q ss_pred CcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC-ccccccCCC
Q 042694 262 SIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP-FSGWMEGNR 340 (554)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p-~~g~~~~~~ 340 (554)
+.+... ........|..+|..+|.++..+....|++++++||+.|||+...+ ++..+..
T Consensus 149 ----------------~~~~~~--~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~-- 208 (337)
T 2c29_D 149 ----------------DMEFCR--AKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLIT-- 208 (337)
T ss_dssp ----------------CHHHHH--HHCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHH--
T ss_pred ----------------chhhhc--ccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHH--
Confidence 000000 0000000233445666666554444458999999999999986532 1111100
Q ss_pred CccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhc
Q 042694 341 MMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYS 419 (554)
Q Consensus 341 ~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~ 419 (554)
......+.+.. + ... ....+++|+|+|++++.++..... ...|+++++ .+++.|+++.+.+.++
T Consensus 209 ---~~~~~~g~~~~--~-~~~-~~~~~i~v~Dva~a~~~~~~~~~~-----~~~~~~~~~---~~s~~e~~~~i~~~~~ 272 (337)
T 2c29_D 209 ---ALSPITGNEAH--Y-SII-RQGQFVHLDDLCNAHIYLFENPKA-----EGRYICSSH---DCIILDLAKMLREKYP 272 (337)
T ss_dssp ---HTHHHHTCGGG--H-HHH-TEEEEEEHHHHHHHHHHHHHCTTC-----CEEEEECCE---EEEHHHHHHHHHHHCT
T ss_pred ---HHHHHcCCCcc--c-ccc-CCCCEEEHHHHHHHHHHHhcCccc-----CceEEEeCC---CCCHHHHHHHHHHHCC
Confidence 00000011100 0 000 123499999999999988754221 347876554 6899999999998764
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-24 Score=229.34 Aligned_cols=237 Identities=14% Similarity=0.130 Sum_probs=155.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|||||||||||++|++.|++.|+ +|+++.+..- +...+.+|+.+. ....
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~---~V~~l~R~~~-----------------~~~~v~~d~~~~--------~~~~ 198 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH---EVIQLVRKEP-----------------KPGKRFWDPLNP--------ASDL 198 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSSC-----------------CTTCEECCTTSC--------CTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCC-----------------Cccceeecccch--------hHHh
Confidence 78999999999999999999999876 5566553210 001267787643 1234
Q ss_pred hcCccEEEEcCCCCCc----hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 190 AKEVDVIVNSAANTTF----DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
++++|+|||+||.... ......++++|+.||.+++++|.+..++++|||+||+++|+... .+.++.+..+
T Consensus 199 l~~~D~Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~---~~~~~~E~~~--- 272 (516)
T 3oh8_A 199 LDGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDR---GDEILTEESE--- 272 (516)
T ss_dssp TTTCSEEEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEE---EEEEECTTSC---
T ss_pred cCCCCEEEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCC---CCCccCCCCC---
Confidence 4689999999998632 34677889999999999999954446889999999999998321 1223333222
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
.+.+.+... +...|.+...+ ...|++++|+||+.|||+....++.+...
T Consensus 273 -----------~~~~~y~~~------------~~~~E~~~~~~-~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~------- 321 (516)
T 3oh8_A 273 -----------SGDDFLAEV------------CRDWEHATAPA-SDAGKRVAFIRTGVALSGRGGMLPLLKTL------- 321 (516)
T ss_dssp -----------CCSSHHHHH------------HHHHHHTTHHH-HHTTCEEEEEEECEEEBTTBSHHHHHHHT-------
T ss_pred -----------CCcChHHHH------------HHHHHHHHHHH-HhCCCCEEEEEeeEEECCCCChHHHHHHH-------
Confidence 111112111 11222222222 34689999999999999764211111111
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
+..|.. ...++++...++|+|||+|++++.++..... ..+||++++ +++++.|+++.+.+.+|.++
T Consensus 322 ---~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~-----~g~~ni~~~--~~~s~~el~~~i~~~~g~~~ 387 (516)
T 3oh8_A 322 ---FSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIVDAQI-----SGPINAVAP--NPVSNADMTKILATSMHRPA 387 (516)
T ss_dssp ---TC---C-CCCTTSCCEECEEEHHHHHHHHHHHHHCTTC-----CEEEEESCS--CCEEHHHHHHHTTC------
T ss_pred ---HHhCCC-cccCCCCceEceEeHHHHHHHHHHHHhCccc-----CCcEEEECC--CCCCHHHHHHHHHHHhCCCC
Confidence 112222 2346778889999999999999998875432 368999998 79999999999999998754
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-23 Score=204.52 Aligned_cols=216 Identities=16% Similarity=0.236 Sum_probs=154.8
Q ss_pred cEEEEecccccccHHHHHHHHhh--CCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRT--VPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~--~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
|+|||||||||+|++++++|++. +++ |+++.+. ....+ ...++.++.+|++++ +.+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~---V~~~~r~~~~~~~l-----------~~~~~~~~~~D~~d~------~~l 60 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQ---IIAIVRNVEKASTL-----------ADQGVEVRHGDYNQP------ESL 60 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGG---EEEEESCTTTTHHH-----------HHTTCEEEECCTTCH------HHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCe---EEEEEcCHHHHhHH-----------hhcCCeEEEeccCCH------HHH
Confidence 47999999999999999999987 554 4544332 11111 123678899999987 888
Q ss_pred HHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccc
Q 042694 187 DVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~ 266 (554)
..+++++|+|||+|+.. ... ++|+.++.+++++|++ .++++|||+||.+++..
T Consensus 61 ~~~~~~~d~vi~~a~~~-~~~------~~n~~~~~~l~~a~~~-~~~~~~v~~Ss~~~~~~------------------- 113 (287)
T 2jl1_A 61 QKAFAGVSKLLFISGPH-YDN------TLLIVQHANVVKAARD-AGVKHIAYTGYAFAEES------------------- 113 (287)
T ss_dssp HHHTTTCSEEEECCCCC-SCH------HHHHHHHHHHHHHHHH-TTCSEEEEEEETTGGGC-------------------
T ss_pred HHHHhcCCEEEEcCCCC-cCc------hHHHHHHHHHHHHHHH-cCCCEEEEECCCCCCCC-------------------
Confidence 99999999999999963 211 6799999999999998 48899999999876421
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
+. .|..+|..+|.+ ....|++++|+||+.++|+.. +.++..
T Consensus 114 ----------~~--------------~y~~~K~~~E~~----~~~~~~~~~ilrp~~~~~~~~---~~~~~~-------- 154 (287)
T 2jl1_A 114 ----------II--------------PLAHVHLATEYA----IRTTNIPYTFLRNALYTDFFV---NEGLRA-------- 154 (287)
T ss_dssp ----------CS--------------THHHHHHHHHHH----HHHTTCCEEEEEECCBHHHHS---SGGGHH--------
T ss_pred ----------CC--------------chHHHHHHHHHH----HHHcCCCeEEEECCEeccccc---hhhHHH--------
Confidence 00 112223334443 334689999999999887431 122211
Q ss_pred eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 347 LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 347 ~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
....|... .+.++...++++++|+|++++.++.... ..+++||++++ .++|+.|+++.+.+.+|.+
T Consensus 155 -~~~~~~~~--~~~~~~~~~~i~~~Dva~~~~~~~~~~~----~~g~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 220 (287)
T 2jl1_A 155 -STESGAIV--TNAGSGIVNSVTRNELALAAATVLTEEG----HENKTYNLVSN--QPWTFDELAQILSEVSGKK 220 (287)
T ss_dssp -HHHHTEEE--ESCTTCCBCCBCHHHHHHHHHHHHTSSS----CTTEEEEECCS--SCBCHHHHHHHHHHHHSSC
T ss_pred -HhhCCcee--ccCCCCccCccCHHHHHHHHHHHhcCCC----CCCcEEEecCC--CcCCHHHHHHHHHHHHCCc
Confidence 01123222 2345667899999999999998876432 23589999998 7899999999999999875
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=207.08 Aligned_cols=225 Identities=14% Similarity=0.097 Sum_probs=160.5
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|+|||||||||||++|+++|++.+. +|++++... ... ...++.++.+|++++ +.+..
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~---~V~~~~r~~-------~~~-----~~~~~~~~~~Dl~d~------~~~~~ 60 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAE---ILRLADLSP-------LDP-----AGPNEECVQCDLADA------NAVNA 60 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEE---EEEEEESSC-------CCC-----CCTTEEEEECCTTCH------HHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCC---EEEEEecCC-------ccc-----cCCCCEEEEcCCCCH------HHHHH
Confidence 368999999999999999999999875 556555321 000 135789999999987 89999
Q ss_pred HhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccc
Q 042694 189 IAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENF 268 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~ 268 (554)
+.+++|+|||+||.. ..++++..+++|+.||.+++++|++. +.++|||+||..+++.... +.++.+..+
T Consensus 61 ~~~~~D~vi~~Ag~~-~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~g~~~~---~~~~~e~~~------ 129 (267)
T 3rft_A 61 MVAGCDGIVHLGGIS-VEKPFEQILQGNIIGLYNLYEAARAH-GQPRIVFASSNHTIGYYPQ---TERLGPDVP------ 129 (267)
T ss_dssp HHTTCSEEEECCSCC-SCCCHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGTTSBT---TSCBCTTSC------
T ss_pred HHcCCCEEEECCCCc-CcCCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcchHHhCCCCC---CCCCCCCCC------
Confidence 999999999999984 45678899999999999999999984 7899999999999875321 112222111
Q ss_pred cccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeee
Q 042694 269 VSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILY 348 (554)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~ 348 (554)
.++.. .|..+|+..|.+++.+..+.|++++++||+.|+|+..
T Consensus 130 -------~~~~~------------~Y~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~~------------------- 171 (267)
T 3rft_A 130 -------ARPDG------------LYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPN------------------- 171 (267)
T ss_dssp -------CCCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSCC-------------------
T ss_pred -------CCCCC------------hHHHHHHHHHHHHHHHHHHhCCeEEEEEeecccCCCC-------------------
Confidence 01111 2344566677777655555689999999999987411
Q ss_pred eccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 349 YGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 349 ~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
+.+...++++++|+++++..++..... ...+++++++ ++.+|.++... +.+|..|
T Consensus 172 -----------~~~~~~~~~~~~d~a~~~~~~~~~~~~----~~~~~~~~s~--~~~~~~~~~~~--~~~g~~p 226 (267)
T 3rft_A 172 -----------NYRMLSTWFSHDDFVSLIEAVFRAPVL----GCPVVWGASA--NDAGWWDNSHL--GFLGWKP 226 (267)
T ss_dssp -----------STTHHHHBCCHHHHHHHHHHHHHCSCC----CSCEEEECCC--CTTCCBCCGGG--GGGCCCC
T ss_pred -----------CCCceeeEEcHHHHHHHHHHHHhCCCC----CceEEEEeCC--CCCCcccChhH--HHCCCCC
Confidence 123346789999999998887765332 2357777777 56666655332 4455444
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-23 Score=196.87 Aligned_cols=209 Identities=13% Similarity=0.176 Sum_probs=150.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCC-CCCCCCHHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCE-NNLGLEEDLADVI 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~-~~lGLs~~~~~~l 189 (554)
|+|||||||||+|++++++|++++. +|+++.+.. +... ...++.++.+|+++ + +++..+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~---~V~~~~R~~-----~~~~------~~~~~~~~~~D~~d~~------~~~~~~ 60 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY---QIYAGARKV-----EQVP------QYNNVKAVHFDVDWTP------EEMAKQ 60 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC---EEEEEESSG-----GGSC------CCTTEEEEECCTTSCH------HHHHTT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCc-----cchh------hcCCceEEEecccCCH------HHHHHH
Confidence 4799999999999999999999875 556554321 0111 12689999999998 6 889999
Q ss_pred hcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccccc
Q 042694 190 AKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFV 269 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~ 269 (554)
++++|+|||+|+.... ..+++|+.|+.+++++|++ .++++|||+||.+++.... ..| .+
T Consensus 61 ~~~~d~vi~~ag~~~~-----~~~~~n~~~~~~l~~a~~~-~~~~~iv~~SS~~~~~~~~--~~e------~~------- 119 (219)
T 3dqp_A 61 LHGMDAIINVSGSGGK-----SLLKVDLYGAVKLMQAAEK-AEVKRFILLSTIFSLQPEK--WIG------AG------- 119 (219)
T ss_dssp TTTCSEEEECCCCTTS-----SCCCCCCHHHHHHHHHHHH-TTCCEEEEECCTTTTCGGG--CCS------HH-------
T ss_pred HcCCCEEEECCcCCCC-----CcEeEeHHHHHHHHHHHHH-hCCCEEEEECcccccCCCc--ccc------cc-------
Confidence 9999999999998652 3678899999999999998 4889999999987765421 111 00
Q ss_pred ccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeee
Q 042694 270 SNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYY 349 (554)
Q Consensus 270 ~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~ 349 (554)
..... .|..+|..+|.+.. +..+++++++||+.++|+... +.. . .
T Consensus 120 ------------~~~~~------~Y~~sK~~~e~~~~---~~~~i~~~ilrp~~v~g~~~~---~~~---------~--~ 164 (219)
T 3dqp_A 120 ------------FDALK------DYYIAKHFADLYLT---KETNLDYTIIQPGALTEEEAT---GLI---------D--I 164 (219)
T ss_dssp ------------HHHTH------HHHHHHHHHHHHHH---HSCCCEEEEEEECSEECSCCC---SEE---------E--E
T ss_pred ------------ccccc------HHHHHHHHHHHHHH---hccCCcEEEEeCceEecCCCC---Ccc---------c--c
Confidence 00001 12223344444432 567999999999999986331 110 0 0
Q ss_pred ccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHH
Q 042694 350 GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARL 413 (554)
Q Consensus 350 ~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~ 413 (554)
++...++++++|+|++++.++..... .+++||++++ +.++.|+.+.
T Consensus 165 -----------~~~~~~~i~~~Dva~~i~~~l~~~~~----~g~~~~i~~g---~~~~~e~~~~ 210 (219)
T 3dqp_A 165 -----------NDEVSASNTIGDVADTIKELVMTDHS----IGKVISMHNG---KTAIKEALES 210 (219)
T ss_dssp -----------SSSCCCCEEHHHHHHHHHHHHTCGGG----TTEEEEEEEC---SEEHHHHHHT
T ss_pred -----------CCCcCCcccHHHHHHHHHHHHhCccc----cCcEEEeCCC---CccHHHHHHH
Confidence 14567899999999999998876433 2589999987 5788887653
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-23 Score=197.24 Aligned_cols=214 Identities=16% Similarity=0.160 Sum_probs=149.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcE-EEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKL-VPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv-~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|+|||||||||++++++|++++. +|+++.+. ..+.+. ..++ .++.+|++ +
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~~~~~~~~-----------~~~~~~~~~~Dl~--------~ 76 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGH---EPVAMVRNEEQGPELR-----------ERGASDIVVANLE--------E 76 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSGGGHHHHH-----------HTTCSEEEECCTT--------S
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCC---eEEEEECChHHHHHHH-----------hCCCceEEEcccH--------H
Confidence 6789999999999999999999999886 45554432 122211 2367 88999998 2
Q ss_pred HHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 185 LADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
.+...++++|+|||+||.... +.++..+++|+.|+.+++++|++. ++++||++||...... +.
T Consensus 77 ~~~~~~~~~D~vi~~ag~~~~-~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~------~~--------- 139 (236)
T 3e8x_A 77 DFSHAFASIDAVVFAAGSGPH-TGADKTILIDLWGAIKTIQEAEKR-GIKRFIMVSSVGTVDP------DQ--------- 139 (236)
T ss_dssp CCGGGGTTCSEEEECCCCCTT-SCHHHHHHTTTHHHHHHHHHHHHH-TCCEEEEECCTTCSCG------GG---------
T ss_pred HHHHHHcCCCEEEECCCCCCC-CCccccchhhHHHHHHHHHHHHHc-CCCEEEEEecCCCCCC------CC---------
Confidence 334456799999999997654 567888999999999999999984 7899999999543321 10
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
.+ ..... |..+|..+|...+..|++++++||+.|+|+... +.
T Consensus 140 ------------~~----~~~~~----------Y~~sK~~~e~~~~~~gi~~~~lrpg~v~~~~~~---~~--------- 181 (236)
T 3e8x_A 140 ------------GP----MNMRH----------YLVAKRLADDELKRSSLDYTIVRPGPLSNEEST---GK--------- 181 (236)
T ss_dssp ------------SC----GGGHH----------HHHHHHHHHHHHHHSSSEEEEEEECSEECSCCC---SE---------
T ss_pred ------------Ch----hhhhh----------HHHHHHHHHHHHHHCCCCEEEEeCCcccCCCCC---Ce---------
Confidence 00 00011 223344444444467999999999999986431 11
Q ss_pred eeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHH
Q 042694 345 IILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLH 415 (554)
Q Consensus 345 i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~ 415 (554)
... ..+.....++++++|+|++++.++..... .+++||++++ ++++.|+++.+.
T Consensus 182 ---------~~~-~~~~~~~~~~i~~~Dva~~~~~~~~~~~~----~g~~~~v~~~---~~~~~e~~~~i~ 235 (236)
T 3e8x_A 182 ---------VTV-SPHFSEITRSITRHDVAKVIAELVDQQHT----IGKTFEVLNG---DTPIAKVVEQLG 235 (236)
T ss_dssp ---------EEE-ESSCSCCCCCEEHHHHHHHHHHHTTCGGG----TTEEEEEEEC---SEEHHHHHHTC-
T ss_pred ---------EEe-ccCCCcccCcEeHHHHHHHHHHHhcCccc----cCCeEEEeCC---CcCHHHHHHHhc
Confidence 000 12233457899999999999998866432 3589999987 589999988654
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=206.82 Aligned_cols=224 Identities=14% Similarity=0.105 Sum_probs=160.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|||||||||||++|+++|++.+. +|+++++... .. ...++.++.+|++++ +.+..+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~-------~~-----~~~~~~~~~~Dl~d~------~~~~~~ 60 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAH---EVRLSDIVDL-------GA-----AEAHEEIVACDLADA------QAVHDL 60 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEE---EEEECCSSCC-------CC-----CCTTEEECCCCTTCH------HHHHHH
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCC---EEEEEeCCCc-------cc-----cCCCccEEEccCCCH------HHHHHH
Confidence 46899999999999999999998764 6676654211 00 124678899999987 888888
Q ss_pred hcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccccc
Q 042694 190 AKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFV 269 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~ 269 (554)
++++|+|||+|+... .+.++..+++|+.|+.+++++|++ .++++|||+||.++++.... +.++++.++.
T Consensus 61 ~~~~d~vi~~a~~~~-~~~~~~~~~~n~~~~~~l~~a~~~-~~~~~iv~~SS~~~~~~~~~---~~~~~E~~~~------ 129 (267)
T 3ay3_A 61 VKDCDGIIHLGGVSV-ERPWNDILQANIIGAYNLYEAARN-LGKPRIVFASSNHTIGYYPR---TTRIDTEVPR------ 129 (267)
T ss_dssp HTTCSEEEECCSCCS-CCCHHHHHHHTHHHHHHHHHHHHH-TTCCEEEEEEEGGGSTTSBT---TSCBCTTSCC------
T ss_pred HcCCCEEEECCcCCC-CCCHHHHHHHHHHHHHHHHHHHHH-hCCCEEEEeCCHHHhCCCCC---CCCCCCCCCC------
Confidence 899999999999763 356778899999999999999998 47899999999999876321 1222222211
Q ss_pred ccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeee
Q 042694 270 SNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYY 349 (554)
Q Consensus 270 ~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~ 349 (554)
.+.. .|..+|..+|.++..+....+++++++||+.||+. | .
T Consensus 130 -------~~~~------------~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~---~--~--------------- 170 (267)
T 3ay3_A 130 -------RPDS------------LYGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPK---P--K--------------- 170 (267)
T ss_dssp -------CCCS------------HHHHHHHHHHHHHHHHHHTTCCCEEEEEECBCSSS---C--C---------------
T ss_pred -------CCCC------------hHHHHHHHHHHHHHHHHHHcCCCEEEEeceeecCC---C--C---------------
Confidence 1111 23334566666665554556899999999999842 1 0
Q ss_pred ccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 350 GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 350 ~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
+++...++++++|+|++++.++..... ...+||+.++ .+.+|.++.+. +.+|..|
T Consensus 171 ----------~~~~~~~~~~~~dva~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~d~~~~--~~lg~~p 225 (267)
T 3ay3_A 171 ----------DARMMATWLSVDDFMRLMKRAFVAPKL----GCTVVYGASA--NTESWWDNDKS--AFLGWVP 225 (267)
T ss_dssp ----------SHHHHHHBCCHHHHHHHHHHHHHSSCC----CEEEEEECCS--CSSCCBCCGGG--GGGCCCC
T ss_pred ----------CCCeeeccccHHHHHHHHHHHHhCCCC----CceeEecCCC--ccccccCHHHH--HHcCCCC
Confidence 011236789999999999988765321 2478998887 56778777766 6666544
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=196.78 Aligned_cols=224 Identities=18% Similarity=0.158 Sum_probs=155.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++++++|++ ++ +|+++.+..- . . .+ +.+|++++ +.+..++
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~---~V~~~~r~~~------~-~-------~~---~~~Dl~~~------~~~~~~~ 53 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RH---EVIKVYNSSE------I-Q-------GG---YKLDLTDF------PRLEDFI 53 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TS---CEEEEESSSC------C-T-------TC---EECCTTSH------HHHHHHH
T ss_pred CEEEEECCCChhHHHHHHHHhc-CC---eEEEecCCCc------C-C-------CC---ceeccCCH------HHHHHHH
Confidence 4799999999999999999995 64 4555543210 0 0 12 78999987 7787777
Q ss_pred cC--ccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 191 KE--VDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 191 ~~--vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
++ +|+|||+||..... ++++..+++|+.|+.+++++|++. +. +|||+||.++++...+.+.| .++.
T Consensus 54 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~iv~~SS~~~~~~~~~~~~e-----~~~~-- 124 (273)
T 2ggs_A 54 IKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI-DS-YIVHISTDYVFDGEKGNYKE-----EDIP-- 124 (273)
T ss_dssp HHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEEEEGGGSCSSSCSBCT-----TSCC--
T ss_pred HhcCCCEEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEecceeEcCCCCCcCC-----CCCC--
Confidence 75 99999999987753 567889999999999999999984 55 89999999998764322222 1110
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
.+. ..|..+|..+|..... ++++++||+.|+| ..++..++
T Consensus 125 -----------~~~----------------~~Y~~sK~~~e~~~~~--~~~~~iR~~~v~G--~~~~~~~~--------- 164 (273)
T 2ggs_A 125 -----------NPI----------------NYYGLSKLLGETFALQ--DDSLIIRTSGIFR--NKGFPIYV--------- 164 (273)
T ss_dssp -----------CCS----------------SHHHHHHHHHHHHHCC--TTCEEEEECCCBS--SSSHHHHH---------
T ss_pred -----------CCC----------------CHHHHHHHHHHHHHhC--CCeEEEecccccc--ccHHHHHH---------
Confidence 011 1233444555554433 7899999999998 22222221
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
+.....|......++ ..++++++|+|++++.++.... .++||+++ +++++.|+++.+.+.+|..+
T Consensus 165 ~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~~~------~g~~~i~~---~~~s~~e~~~~~~~~~g~~~ 229 (273)
T 2ggs_A 165 YKTLKEGKTVFAFKG---YYSPISARKLASAILELLELRK------TGIIHVAG---ERISRFELALKIKEKFNLPG 229 (273)
T ss_dssp HHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHHTC------CEEEECCC---CCEEHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhcCc------CCeEEECC---CcccHHHHHHHHHHHhCCCh
Confidence 011112221122222 6799999999999999886532 35999987 48999999999999998753
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=193.21 Aligned_cols=233 Identities=14% Similarity=0.104 Sum_probs=159.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|+|||||||+|++++++|++.++.. +|+++.+.. +++.. ...++.++.+|++++ +.+..
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~-~~~~~---------~~~~~~~~~~D~~d~------~~~~~ 65 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSA-QGKEK---------IGGEADVFIGDITDA------DSINP 65 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCH-HHHHH---------TTCCTTEEECCTTSH------HHHHH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCC-Cchhh---------cCCCeeEEEecCCCH------HHHHH
Confidence 46899999999999999999999983222 566665432 22211 123567899999987 88999
Q ss_pred HhcCccEEEEcCCCCCch----------------hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccccee
Q 042694 189 IAKEVDVIVNSAANTTFD----------------ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKV 252 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~----------------~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i 252 (554)
+.+++|+|||+|+..... +......++|+.++.+++++|++. ++++|||+||.+++....
T Consensus 66 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~~~~~--- 141 (253)
T 1xq6_A 66 AFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSMGGTNPDH--- 141 (253)
T ss_dssp HHTTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEEETTTTCTTC---
T ss_pred HHcCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-CCCEEEEEcCccCCCCCC---
Confidence 999999999999975421 112346789999999999999985 789999999987642210
Q ss_pred eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc
Q 042694 253 MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF 332 (554)
Q Consensus 253 ~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~ 332 (554)
+ .. .|.. ..|..+|..+|......|++++++||+.++|+....
T Consensus 142 ---------~----------------~~------~~~~-----~~y~~sK~~~e~~~~~~~i~~~~vrpg~v~~~~~~~- 184 (253)
T 1xq6_A 142 ---------P----------------LN------KLGN-----GNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGV- 184 (253)
T ss_dssp ---------G----------------GG------GGGG-----CCHHHHHHHHHHHHHTSSSCEEEEEECEEECSCSSS-
T ss_pred ---------c----------------cc------cccc-----hhHHHHHHHHHHHHHhCCCceEEEecceeecCCcch-
Confidence 0 00 0000 113334555555554579999999999999965321
Q ss_pred cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCC-CcccHHHHH
Q 042694 333 SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVV-NPLVFQDLA 411 (554)
Q Consensus 333 ~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~-~~it~~e~~ 411 (554)
. ..+...... ++. ...++++++|+|++++.++..... .+++||++++.. +++++.|++
T Consensus 185 ---~-------~~~~~~~~~----~~~---~~~~~~~~~Dva~~~~~~~~~~~~----~g~~~~i~~~~~~~~~s~~e~~ 243 (253)
T 1xq6_A 185 ---R-------ELLVGKDDE----LLQ---TDTKTVPRADVAEVCIQALLFEEA----KNKAFDLGSKPEGTSTPTKDFK 243 (253)
T ss_dssp ---S-------CEEEESTTG----GGG---SSCCEEEHHHHHHHHHHHTTCGGG----TTEEEEEEECCTTTSCCCCCHH
T ss_pred ---h-------hhhccCCcC----CcC---CCCcEEcHHHHHHHHHHHHcCccc----cCCEEEecCCCcCCCCCHHHHH
Confidence 0 111100110 111 125689999999999988765332 357999998731 469999999
Q ss_pred HHHHhHhcc
Q 042694 412 RLLHEHYSA 420 (554)
Q Consensus 412 ~~~~~~~~~ 420 (554)
+.+.+.+|+
T Consensus 244 ~~~~~~~g~ 252 (253)
T 1xq6_A 244 ALFSQVTSR 252 (253)
T ss_dssp HHHHTCCCC
T ss_pred HHHHHHhCC
Confidence 999998875
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-22 Score=197.58 Aligned_cols=217 Identities=14% Similarity=0.111 Sum_probs=152.1
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
|+|||||||||+|++++++|++. +.+| +++.+..- .. ......++.++.+|++++ +.+..+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V---~~~~R~~~-----~~----~~~~~~~v~~~~~D~~d~------~~l~~~ 62 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHF---HIGVRNVE-----KV----PDDWRGKVSVRQLDYFNQ------ESMVEA 62 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTE---EEEESSGG-----GS----CGGGBTTBEEEECCTTCH------HHHHHH
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcE---EEEECCHH-----HH----HHhhhCCCEEEEcCCCCH------HHHHHH
Confidence 47999999999999999998886 6544 44432210 01 111345889999999988 889999
Q ss_pred hcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccccc
Q 042694 190 AKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFV 269 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~ 269 (554)
++++|+|||+|+..... ..|+.++++++++|++ .++++|||+||...... .++
T Consensus 63 ~~~~d~vi~~a~~~~~~-------~~~~~~~~~l~~aa~~-~gv~~iv~~Ss~~~~~~-------~~~------------ 115 (289)
T 3e48_A 63 FKGMDTVVFIPSIIHPS-------FKRIPEVENLVYAAKQ-SGVAHIIFIGYYADQHN-------NPF------------ 115 (289)
T ss_dssp TTTCSEEEECCCCCCSH-------HHHHHHHHHHHHHHHH-TTCCEEEEEEESCCSTT-------CCS------------
T ss_pred HhCCCEEEEeCCCCccc-------hhhHHHHHHHHHHHHH-cCCCEEEEEcccCCCCC-------CCC------------
Confidence 99999999999976543 3488999999999999 47999999999432110 000
Q ss_pred ccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeee
Q 042694 270 SNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYY 349 (554)
Q Consensus 270 ~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~ 349 (554)
+ .+++. ..+|......|++++|+||+.++|+.. .|.... .
T Consensus 116 -------~------------------~~~~~--~~~e~~~~~~g~~~~ilrp~~~~~~~~----~~~~~~---------~ 155 (289)
T 3e48_A 116 -------H------------------MSPYF--GYASRLLSTSGIDYTYVRMAMYMDPLK----PYLPEL---------M 155 (289)
T ss_dssp -------T------------------THHHH--HHHHHHHHHHCCEEEEEEECEESTTHH----HHHHHH---------H
T ss_pred -------c------------------cchhH--HHHHHHHHHcCCCEEEEeccccccccH----HHHHHH---------H
Confidence 0 00000 011222223589999999999988532 222110 0
Q ss_pred ccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 350 GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 350 ~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
..+.. ..+.++...++++++|+|++++.++...... +++||++ + .++|+.|+++.+.+.+|++
T Consensus 156 ~~~~~--~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~----g~~~~~~-~--~~~s~~e~~~~~~~~~g~~ 218 (289)
T 3e48_A 156 NMHKL--IYPAGDGRINYITRNDIARGVIAIIKNPDTW----GKRYLLS-G--YSYDMKELAAILSEASGTE 218 (289)
T ss_dssp HHTEE--CCCCTTCEEEEECHHHHHHHHHHHHHCGGGT----TCEEEEC-C--EEEEHHHHHHHHHHHHTSC
T ss_pred HCCCE--ecCCCCceeeeEEHHHHHHHHHHHHcCCCcC----CceEEeC-C--CcCCHHHHHHHHHHHHCCc
Confidence 11211 1244677789999999999999988764431 5799999 7 7999999999999999974
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=198.48 Aligned_cols=230 Identities=17% Similarity=0.145 Sum_probs=155.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+++|||||||||+|++|++.|++.+++ |+++.+.. .++.... ......++.++.||+.++ +.+
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~---V~~l~R~~~~~~~~~~~~-----~~l~~~~v~~~~~Dl~d~------~~l 75 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRP---TYILARPGPRSPSKAKIF-----KALEDKGAIIVYGLINEQ------EAM 75 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCC---EEEEECSSCCCHHHHHHH-----HHHHHTTCEEEECCTTCH------HHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCC---EEEEECCCCCChhHHHHH-----HHHHhCCcEEEEeecCCH------HHH
Confidence 568999999999999999999998865 44443211 1122110 011235789999999987 888
Q ss_pred HHHhc--CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 187 DVIAK--EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
..+++ ++|+|||+||. .|+.++.+++++|++.+++++||+ |+ ++.. .+|. .+
T Consensus 76 ~~~~~~~~~d~Vi~~a~~------------~n~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~---~~e~-----~~-- 129 (346)
T 3i6i_A 76 EKILKEHEIDIVVSTVGG------------ESILDQIALVKAMKAVGTIKRFLP-SE---FGHD---VNRA-----DP-- 129 (346)
T ss_dssp HHHHHHTTCCEEEECCCG------------GGGGGHHHHHHHHHHHCCCSEEEC-SC---CSSC---TTTC-----CC--
T ss_pred HHHHhhCCCCEEEECCch------------hhHHHHHHHHHHHHHcCCceEEee-cc---cCCC---CCcc-----Cc--
Confidence 88888 99999999997 399999999999999644999986 42 3321 1110 00
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
.++ ... |..+|..+|.+.+..|++++|+||+.++|... +++.. +
T Consensus 130 -----------~~p------~~~----------y~~sK~~~e~~l~~~g~~~tivrpg~~~g~~~---~~~~~------~ 173 (346)
T 3i6i_A 130 -----------VEP------GLN----------MYREKRRVRQLVEESGIPFTYICCNSIASWPY---YNNIH------P 173 (346)
T ss_dssp -----------CTT------HHH----------HHHHHHHHHHHHHHTTCCBEEEECCEESSCCC---SCC---------
T ss_pred -----------CCC------cch----------HHHHHHHHHHHHHHcCCCEEEEEecccccccC---ccccc------c
Confidence 000 011 22334444544445799999999999998543 22211 1
Q ss_pred eeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 345 IILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 345 i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
.......+.+ .++++++...++++++|+|++++.++..+.. .+++||++++. +++|+.|+++.+.+.+|+.
T Consensus 174 ~~~~~~~~~~-~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~i~g~~-~~~s~~e~~~~~~~~~g~~ 244 (346)
T 3i6i_A 174 SEVLPPTDFF-QIYGDGNVKAYFVAGTDIGKFTMKTVDDVRT----LNKSVHFRPSC-NCLNINELASVWEKKIGRT 244 (346)
T ss_dssp --CCCCSSCE-EEETTSCCCEEEECHHHHHHHHHHHTTCGGG----TTEEEECCCGG-GEECHHHHHHHHHHHHTSC
T ss_pred ccccCCCceE-EEccCCCceEEecCHHHHHHHHHHHHhCccc----cCeEEEEeCCC-CCCCHHHHHHHHHHHHCCC
Confidence 0011112232 3457788889999999999999998866432 24789988422 6899999999999999975
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=197.16 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=148.1
Q ss_pred EEEEecccccccHHHHHHHHhh--CCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRT--VPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~--~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|||||||||+|++++++|++. +++ |+++.+. ....+ ...++.++.+|++++ +.+.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~---V~~~~r~~~~~~~~-----------~~~~~~~~~~D~~d~------~~~~ 60 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQ---IVAIVRNPAKAQAL-----------AAQGITVRQADYGDE------AALT 60 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGG---EEEEESCTTTCHHH-----------HHTTCEEEECCTTCH------HHHH
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCce---EEEEEcChHhhhhh-----------hcCCCeEEEcCCCCH------HHHH
Confidence 4899999999999999999987 554 4444322 11111 123678899999987 8888
Q ss_pred HHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccc
Q 042694 188 VIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKEN 267 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~ 267 (554)
.+++++|+|||+|+.. . ..|+.++++++++|++. ++++|||+||.+++..
T Consensus 61 ~~~~~~d~vi~~a~~~-~--------~~~~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~~-------------------- 110 (286)
T 2zcu_A 61 SALQGVEKLLLISSSE-V--------GQRAPQHRNVINAAKAA-GVKFIAYTSLLHADTS-------------------- 110 (286)
T ss_dssp HHTTTCSEEEECC-----------------CHHHHHHHHHHHH-TCCEEEEEEETTTTTC--------------------
T ss_pred HHHhCCCEEEEeCCCC-c--------hHHHHHHHHHHHHHHHc-CCCEEEEECCCCCCCC--------------------
Confidence 9999999999999852 1 25899999999999985 7899999999877511
Q ss_pred ccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceee
Q 042694 268 FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIIL 347 (554)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~ 347 (554)
+. .|..+|..+|.++. ..+++++|+||+.++++.. .++..
T Consensus 111 ---------~~--------------~y~~sK~~~e~~~~----~~~~~~~ilrp~~~~~~~~----~~~~~--------- 150 (286)
T 2zcu_A 111 ---------PL--------------GLADEHIETEKMLA----DSGIVYTLLRNGWYSENYL----ASAPA--------- 150 (286)
T ss_dssp ---------CS--------------TTHHHHHHHHHHHH----HHCSEEEEEEECCBHHHHH----TTHHH---------
T ss_pred ---------cc--------------hhHHHHHHHHHHHH----HcCCCeEEEeChHHhhhhH----HHhHH---------
Confidence 00 22233444444433 3589999999988766321 11110
Q ss_pred eeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 348 YYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 348 ~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
....|.+. .++++...++++++|+|++++.++..+.. .+++||++++ .++|+.|+++.+.+.+|++
T Consensus 151 ~~~~~~~~--~~~~~~~~~~i~~~Dva~~~~~~~~~~~~----~g~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 216 (286)
T 2zcu_A 151 ALEHGVFI--GAAGDGKIASATRADYAAAAARVISEAGH----EGKVYELAGD--SAWTLTQLAAELTKQSGKQ 216 (286)
T ss_dssp HHHHTEEE--ESCTTCCBCCBCHHHHHHHHHHHHHSSSC----TTCEEEECCS--SCBCHHHHHHHHHHHHSSC
T ss_pred hhcCCcee--ccCCCCccccccHHHHHHHHHHHhcCCCC----CCceEEEeCC--CcCCHHHHHHHHHHHHCCC
Confidence 01123332 24556778999999999999988765322 3579999998 7899999999999999874
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=187.92 Aligned_cols=215 Identities=10% Similarity=0.022 Sum_probs=139.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|+++|++++. +|+++.+.. +.+... ...++.++.+|++++ +. ...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~-~~~~~~--------~~~~~~~~~~D~~d~------~~--~~~ 60 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH---EVLAVVRDP-QKAADR--------LGATVATLVKEPLVL------TE--ADL 60 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH-HHHHHH--------TCTTSEEEECCGGGC------CH--HHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC---EEEEEEecc-cccccc--------cCCCceEEecccccc------cH--hhc
Confidence 4799999999999999999999876 455554331 222221 234788999999998 33 556
Q ss_pred cCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccccc
Q 042694 191 KEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVS 270 (554)
Q Consensus 191 ~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~ 270 (554)
+++|+|||+|+...... ....|+.++++++++|++. + ++||++||++++....+. ....+.++..
T Consensus 61 ~~~d~vi~~ag~~~~~~----~~~~n~~~~~~l~~a~~~~-~-~~~v~~SS~~~~~~~~~~-~~~~~~~~~~-------- 125 (224)
T 3h2s_A 61 DSVDAVVDALSVPWGSG----RGYLHLDFATHLVSLLRNS-D-TLAVFILGSASLAMPGAD-HPMILDFPES-------- 125 (224)
T ss_dssp TTCSEEEECCCCCTTSS----CTHHHHHHHHHHHHTCTTC-C-CEEEEECCGGGSBCTTCS-SCGGGGCCGG--------
T ss_pred ccCCEEEECCccCCCcc----hhhHHHHHHHHHHHHHHHc-C-CcEEEEecceeeccCCCC-ccccccCCCC--------
Confidence 79999999999862111 2467999999999999985 6 999999998665432210 0001111000
Q ss_pred cccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeec
Q 042694 271 NSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYG 350 (554)
Q Consensus 271 ~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~ 350 (554)
+ .+.. .|..+|..+|.+. ...+..+++++++||+.|+|+.. ..++. .+
T Consensus 126 --~---~~~~------------~y~~sK~~~e~~~-~~~~~~~i~~~ivrp~~v~g~~~--~~~~~------------~~ 173 (224)
T 3h2s_A 126 --A---ASQP------------WYDGALYQYYEYQ-FLQMNANVNWIGISPSEAFPSGP--ATSYV------------AG 173 (224)
T ss_dssp --G---GGST------------THHHHHHHHHHHH-HHTTCTTSCEEEEEECSBCCCCC--CCCEE------------EE
T ss_pred --C---ccch------------hhHHHHHHHHHHH-HHHhcCCCcEEEEcCccccCCCc--ccCce------------ec
Confidence 0 0011 2333455555432 23345699999999999999622 12211 01
Q ss_pred cceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 351 KGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 351 ~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...+ ..++...++++++|+|++++.++..+.. .+++|++++.
T Consensus 174 ~~~~----~~~~~~~~~i~~~DvA~~~~~~l~~~~~----~g~~~~~~~~ 215 (224)
T 3h2s_A 174 KDTL----LVGEDGQSHITTGNMALAILDQLEHPTA----IRDRIVVRDA 215 (224)
T ss_dssp SSBC----CCCTTSCCBCCHHHHHHHHHHHHHSCCC----TTSEEEEEEC
T ss_pred cccc----ccCCCCCceEeHHHHHHHHHHHhcCccc----cCCEEEEecC
Confidence 1111 1133446899999999999999876443 3589999987
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=185.10 Aligned_cols=220 Identities=14% Similarity=0.103 Sum_probs=132.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||+|++|+++|++++. +|+++.+.. +++... ..++.++.+|++++ +. ..+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~-~~~~~~---------~~~~~~~~~D~~d~------~~--~~~ 59 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH---EVTAIVRNA-GKITQT---------HKDINILQKDIFDL------TL--SDL 59 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCS-HHHHHH---------CSSSEEEECCGGGC------CH--HHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC---EEEEEEcCc-hhhhhc---------cCCCeEEeccccCh------hh--hhh
Confidence 5799999999999999999999886 455554321 112111 14788999999998 33 455
Q ss_pred cCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccccc
Q 042694 191 KEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVS 270 (554)
Q Consensus 191 ~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~ 270 (554)
+++|+|||+|+.... ....|+.++++++++|++. +.+++|++||..++....+ ..+..+..+
T Consensus 60 ~~~d~vi~~ag~~~~------~~~~~~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~---~~~~~~~~~-------- 121 (221)
T 3ew7_A 60 SDQNVVVDAYGISPD------EAEKHVTSLDHLISVLNGT-VSPRLLVVGGAASLQIDED---GNTLLESKG-------- 121 (221)
T ss_dssp TTCSEEEECCCSSTT------TTTSHHHHHHHHHHHHCSC-CSSEEEEECCCC---------------------------
T ss_pred cCCCEEEECCcCCcc------ccchHHHHHHHHHHHHHhc-CCceEEEEecceEEEcCCC---CccccccCC--------
Confidence 799999999998432 2467999999999999984 6899999999877544221 001100000
Q ss_pred cccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeec
Q 042694 271 NSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYG 350 (554)
Q Consensus 271 ~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~ 350 (554)
......|..+|..+|.+.....+..+++++|+||+.++|+.. ..+... .+
T Consensus 122 -----------------~~~~~~y~~~k~~~e~~~~~~~~~~gi~~~ivrp~~v~g~~~--~~~~~~-----------~~ 171 (221)
T 3ew7_A 122 -----------------LREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPGE--RTGDYQ-----------IG 171 (221)
T ss_dssp --------------------CCCSCCHHHHHHHHHHHHTTTTTSCEEEEECSSCCCCC----------------------
T ss_pred -----------------CCCHHHHHHHHHHHHHHHHHHhhccCccEEEEeCcceecCCC--ccCceE-----------ec
Confidence 000114666777777763222115799999999999999621 111110 01
Q ss_pred cceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHH
Q 042694 351 KGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQD 409 (554)
Q Consensus 351 ~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e 409 (554)
...+. ..+++ .++++++|+|++++.++..+.. .+++||++++ .+.+..|
T Consensus 172 ~~~~~-~~~~~---~~~i~~~Dva~~~~~~l~~~~~----~g~~~~~~~~--~~~~~~~ 220 (221)
T 3ew7_A 172 KDHLL-FGSDG---NSFISMEDYAIAVLDEIERPNH----LNEHFTVAGK--LEHHHHH 220 (221)
T ss_dssp ----------------CCCHHHHHHHHHHHHHSCSC----TTSEEECCC----------
T ss_pred cccce-ecCCC---CceEeHHHHHHHHHHHHhCccc----cCCEEEECCC--Ccccccc
Confidence 11111 11111 3689999999999999876443 3589999998 5555443
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-21 Score=191.04 Aligned_cols=229 Identities=11% Similarity=0.045 Sum_probs=155.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhC-CCccEEEEEcchh-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTV-PDVGKIFIINAEL-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~~~~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+|+|||||||+|++++++|++.+ . +|+++.+.. -..... ....++.++.+|+.++ +.+.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~---~V~~~~R~~~~~~~~~--------l~~~~~~~~~~D~~d~------~~l~ 67 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF---KVRVVTRNPRKKAAKE--------LRLQGAEVVQGDQDDQ------VIME 67 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS---EEEEEESCTTSHHHHH--------HHHTTCEEEECCTTCH------HHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc---eEEEEEcCCCCHHHHH--------HHHCCCEEEEecCCCH------HHHH
Confidence 4789999999999999999999987 4 455554321 111110 0124678899999987 8899
Q ss_pred HHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccc
Q 042694 188 VIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKEN 267 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~ 267 (554)
.+++++|+|||+|+... . .....|+.++++++++|++. ++++|||+||..+++...+
T Consensus 68 ~~~~~~d~vi~~a~~~~---~--~~~~~~~~~~~~~~~aa~~~-gv~~iv~~S~~~~~~~~~~----------------- 124 (299)
T 2wm3_A 68 LALNGAYATFIVTNYWE---S--CSQEQEVKQGKLLADLARRL-GLHYVVYSGLENIKKLTAG----------------- 124 (299)
T ss_dssp HHHTTCSEEEECCCHHH---H--TCHHHHHHHHHHHHHHHHHH-TCSEEEECCCCCHHHHTTT-----------------
T ss_pred HHHhcCCEEEEeCCCCc---c--ccchHHHHHHHHHHHHHHHc-CCCEEEEEcCccccccCCC-----------------
Confidence 99999999999997421 1 12356889999999999984 8999999888766543110
Q ss_pred ccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceee
Q 042694 268 FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIIL 347 (554)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~ 347 (554)
.+...|..+|..+|......|++++|+||+.++|+... .+...
T Consensus 125 -------------------------~~~~~y~~sK~~~e~~~~~~gi~~~ilrp~~~~~~~~~---~~~~~--------- 167 (299)
T 2wm3_A 125 -------------------------RLAAAHFDGKGEVEEYFRDIGVPMTSVRLPCYFENLLS---HFLPQ--------- 167 (299)
T ss_dssp -------------------------SCCCHHHHHHHHHHHHHHHHTCCEEEEECCEEGGGGGT---TTCCE---------
T ss_pred -------------------------cccCchhhHHHHHHHHHHHCCCCEEEEeecHHhhhchh---hcCCc---------
Confidence 00111223344445444445899999999999985432 11110
Q ss_pred eecccee-eeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 348 YYGKGQL-TGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 348 ~~~~G~~-~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
....|.. ....+.++...++++++|++++++.++..+.. ..+++||++++ ++|+.|+++.+.+.+|++
T Consensus 168 ~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~---~~g~~~~~~g~---~~s~~e~~~~~~~~~g~~ 236 (299)
T 2wm3_A 168 KAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEK---YVGQNIGLSTC---RHTAEEYAALLTKHTRKV 236 (299)
T ss_dssp ECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHH---HTTCEEECCSE---EECHHHHHHHHHHHHSSC
T ss_pred ccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhh---hCCeEEEeeec---cCCHHHHHHHHHHHHCCC
Confidence 0112211 01112356778999999999999988765321 12479999864 799999999999999975
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-20 Score=189.14 Aligned_cols=229 Identities=14% Similarity=0.038 Sum_probs=153.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-hhHHHHHHHcCCchhhhccCcEEEEEcc-CCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-ELFKCLKQTYGKSYQAFMLSKLVPAVGN-VCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GD-l~~~~lGLs~~~~~ 187 (554)
+|+|+|||||||+|++|+++|++++++| +++.+ ..-....... ...++.++.|| ++++ +.+.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V---~~~~R~~~~~~~~~l~-------~~~~v~~v~~D~l~d~------~~l~ 68 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHV---RAQVHSLKGLIAEELQ-------AIPNVTLFQGPLLNNV------PLMD 68 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCE---EEEESCSCSHHHHHHH-------TSTTEEEEESCCTTCH------HHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEE---EEEECCCChhhHHHHh-------hcCCcEEEECCccCCH------HHHH
Confidence 5789999999999999999999987654 44322 1111001100 12368899999 9887 8888
Q ss_pred HHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCC-CceEEEEeeceecccccceeeccccCCCCCcccc
Q 042694 188 VIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNK-LKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~-~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~ 266 (554)
.+++++|+|||+++.... ..|+.+ ++++++|++. + +++|||+||.++... ...
T Consensus 69 ~~~~~~d~Vi~~a~~~~~--------~~~~~~-~~l~~aa~~~-g~v~~~V~~SS~~~~~~----------~~~------ 122 (352)
T 1xgk_A 69 TLFEGAHLAFINTTSQAG--------DEIAIG-KDLADAAKRA-GTIQHYIYSSMPDHSLY----------GPW------ 122 (352)
T ss_dssp HHHTTCSEEEECCCSTTS--------CHHHHH-HHHHHHHHHH-SCCSEEEEEECCCGGGT----------SSC------
T ss_pred HHHhcCCEEEEcCCCCCc--------HHHHHH-HHHHHHHHHc-CCccEEEEeCCcccccc----------CCC------
Confidence 888999999999986421 347776 9999999985 6 899999999863110 000
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
+. . .|..+|..+|.++ ...+++++|+||+ +||+... +.. .+++
T Consensus 123 ----------~~-~------------~y~~sK~~~E~~~----~~~gi~~~ivrpg-~~g~~~~---~~~------~~~~ 165 (352)
T 1xgk_A 123 ----------PA-V------------PMWAPKFTVENYV----RQLGLPSTFVYAG-IYNNNFT---SLP------YPLF 165 (352)
T ss_dssp ----------CC-C------------TTTHHHHHHHHHH----HTSSSCEEEEEEC-EEGGGCB---SSS------CSSC
T ss_pred ----------CC-c------------cHHHHHHHHHHHH----HHcCCCEEEEecc-eecCCch---hcc------cccc
Confidence 00 0 2333444444444 3458999999988 5665432 110 0111
Q ss_pred e--eeccceee-eeecCCCcccccchh-hHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 347 L--YYGKGQLT-GFLVDPNGILDVVPA-DMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 347 ~--~~~~G~~~-~~~~~~~~~~d~vpV-D~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
. ....|... .++++++...+++++ ||+|++++.++..... ...+++||++++ ++|+.|+++.+.+..|+++
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~--~~~g~~~~l~~~---~~s~~e~~~~i~~~~G~~~ 240 (352)
T 1xgk_A 166 QMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQ--KWNGHRIALTFE---TLSPVQVCAAFSRALNRRV 240 (352)
T ss_dssp BEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHH--HHTTCEEEECSE---EECHHHHHHHHHHHHTSCE
T ss_pred cccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCch--hhCCeEEEEecC---CCCHHHHHHHHHHHHCCCC
Confidence 1 11334432 335667788999999 9999999998875311 002479999953 7999999999999999753
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=186.37 Aligned_cols=236 Identities=14% Similarity=0.137 Sum_probs=153.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|||||||+|+++++.|++.+.+ |+++.+.. .++..... .....++.++.||+.++ +.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~---V~~~~R~~~~~~~~~~~~~~-----~~~~~~~~~~~~D~~d~------~~ 69 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHP---TYVLFRPEVVSNIDKVQMLL-----YFKQLGAKLIEASLDDH------QR 69 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCSCCSSCHHHHHHHH-----HHHTTTCEEECCCSSCH------HH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCc---EEEEECCCcccchhHHHHHH-----HHHhCCeEEEeCCCCCH------HH
Confidence 578999999999999999999998764 45544321 11211100 01134688999999987 88
Q ss_pred HHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 186 ADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
+..+++++|+|||+|+..... .|+.++.+++++|++.+++++||+ |+ ++...... + .+.
T Consensus 70 l~~~~~~~d~vi~~a~~~~~~--------~~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~~~~-~------~~~-- 128 (313)
T 1qyd_A 70 LVDALKQVDVVISALAGGVLS--------HHILEQLKLVEAIKEAGNIKRFLP-SE---FGMDPDIM-E------HAL-- 128 (313)
T ss_dssp HHHHHTTCSEEEECCCCSSSS--------TTTTTHHHHHHHHHHSCCCSEEEC-SC---CSSCTTSC-C------CCC--
T ss_pred HHHHHhCCCEEEECCccccch--------hhHHHHHHHHHHHHhcCCCceEEe-cC---CcCCcccc-c------cCC--
Confidence 888899999999999976542 489999999999998533999985 42 33211100 0 000
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
.+.. . . | .+|..+|...+..|++++|+||+.+++.....+.... .
T Consensus 129 ----------~p~~------~------~----y-~sK~~~e~~~~~~g~~~~ilrp~~~~~~~~~~~~~~~-------~- 173 (313)
T 1qyd_A 129 ----------QPGS------I------T----F-IDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLD-------G- 173 (313)
T ss_dssp ----------SSTT------H------H----H-HHHHHHHHHHHHTTCCBCEEECCEEHHHHTTTSSCTT-------C-
T ss_pred ----------CCCc------c------h----H-HHHHHHHHHHHhcCCCeEEEEeceecccccccccccc-------c-
Confidence 0000 0 1 1 2334445444456899999999999885332111100 0
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
......+.+ .++++++...++++++|++++++.++..+.. .+++|+++++. +++|+.|+++.+.+..|+.
T Consensus 174 ~~~~~~~~~-~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~g~~-~~~s~~e~~~~~~~~~g~~ 243 (313)
T 1qyd_A 174 HMMPPRDKV-LIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT----LNKTMYIRPPM-NILSQKEVIQIWERLSEQN 243 (313)
T ss_dssp CSSCCSSEE-CCBTTSCSEEEEECHHHHHHHHHHHTTCGGG----SSSEEECCCGG-GEEEHHHHHHHHHHHHTCC
T ss_pred cccCCCCeE-EEeCCCCceEEEEEHHHHHHHHHHHHhCccc----CCceEEEeCCC-CccCHHHHHHHHHHhcCCC
Confidence 000111222 2335677789999999999999988765432 24677776531 5899999999999999975
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-21 Score=181.51 Aligned_cols=207 Identities=16% Similarity=0.108 Sum_probs=144.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.+|+|+|||||||+|++++++|+++++ ..+|+++.+.... ...++.++.+|+.++ +.+..
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~-~~~V~~~~r~~~~-------------~~~~~~~~~~D~~~~------~~~~~ 63 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPT-LAKVIAPARKALA-------------EHPRLDNPVGPLAEL------LPQLD 63 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTT-CCEEECCBSSCCC-------------CCTTEECCBSCHHHH------GGGCC
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCC-CCeEEEEeCCCcc-------------cCCCceEEeccccCH------HHHHH
Confidence 357999999999999999999999875 1256655432110 124788899999876 55544
Q ss_pred HhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccc
Q 042694 189 IAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKEN 267 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~ 267 (554)
+. +|+|||+|+.... .++++..+++|+.++.+++++|++. ++++|||+||..+++...
T Consensus 64 ~~--~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~~~------------------ 122 (215)
T 2a35_A 64 GS--IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM-GARHYLVVSALGADAKSS------------------ 122 (215)
T ss_dssp SC--CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTTCS------------------
T ss_pred hh--hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHc-CCCEEEEECCcccCCCCc------------------
Confidence 44 9999999997653 3467888999999999999999984 789999999988765310
Q ss_pred ccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCc-EEEEccceeeecccCCccccccCCCCcccee
Q 042694 268 FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIP-VVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp-~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
..|..+|..+|...+..+++ ++++||+.++|+... +.+.....
T Consensus 123 ----------------------------~~y~~sK~~~e~~~~~~~~~~~~~vrp~~v~g~~~~--~~~~~~~~------ 166 (215)
T 2a35_A 123 ----------------------------IFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREE--FRLAEILA------ 166 (215)
T ss_dssp ----------------------------SHHHHHHHHHHHHHTTSCCSEEEEEECCSEESTTSC--EEGGGGTT------
T ss_pred ----------------------------cHHHHHHHHHHHHHHHcCCCeEEEEeCceeeCCCCc--chHHHHHH------
Confidence 01223344455544456899 999999999997653 22222211
Q ss_pred eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHH
Q 042694 347 LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQ 408 (554)
Q Consensus 347 ~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~ 408 (554)
....+ + . +...++++++|+|++++.++.... +++||++++ +++++.
T Consensus 167 ----~~~~~-~-~--~~~~~~i~~~Dva~~~~~~~~~~~------~~~~~i~~~--~~~~~~ 212 (215)
T 2a35_A 167 ----APIAR-I-L--PGKYHGIEACDLARALWRLALEEG------KGVRFVESD--ELRKLG 212 (215)
T ss_dssp ----CCCC--------CHHHHHHHHHHHHHHHHHHTCCC------SEEEEEEHH--HHHHHH
T ss_pred ----Hhhhh-c-c--CCCcCcEeHHHHHHHHHHHHhcCC------CCceEEcHH--HHHHhh
Confidence 01111 1 1 125789999999999999876432 579999987 555554
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-19 Score=178.14 Aligned_cols=230 Identities=13% Similarity=0.118 Sum_probs=148.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-----H-HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-----F-KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-----~-~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+++|+|||||||+|+++++.|++++++| +++.+.. . ++..... .....++.++.+|+.++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V---~~~~R~~~~~~~~~~~~~~~~-----~l~~~~v~~v~~D~~d~------ 67 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPT---YALVRKTITAANPETKEELID-----NYQSLGVILLEGDINDH------ 67 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCE---EEEECCSCCSSCHHHHHHHHH-----HHHHTTCEEEECCTTCH------
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcE---EEEECCCcccCChHHHHHHHH-----HHHhCCCEEEEeCCCCH------
Confidence 5789999999999999999999998754 3333221 0 2211100 01124678899999987
Q ss_pred HHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCc
Q 042694 184 DLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSI 263 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~ 263 (554)
+.+..+++++|+|||+|+... +.++.+++++|++.+++++||+ |+ ++... +|. ...
T Consensus 68 ~~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~---~~~-----~~~ 123 (307)
T 2gas_A 68 ETLVKAIKQVDIVICAAGRLL------------IEDQVKIIKAIKEAGNVKKFFP-SE---FGLDV---DRH-----DAV 123 (307)
T ss_dssp HHHHHHHTTCSEEEECSSSSC------------GGGHHHHHHHHHHHCCCSEEEC-SC---CSSCT---TSC-----CCC
T ss_pred HHHHHHHhCCCEEEECCcccc------------cccHHHHHHHHHhcCCceEEee-cc---cccCc---ccc-----cCC
Confidence 888899999999999999754 6788999999998533899983 32 33211 110 000
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
.+ . ... | .+|..+|...+..+++++++||+.+++... +.+... .
T Consensus 124 -------------~p---~--~~~------y-----~sK~~~e~~~~~~~i~~~~lrp~~~~~~~~---~~~~~~----~ 167 (307)
T 2gas_A 124 -------------EP---V--RQV------F-----EEKASIRRVIEAEGVPYTYLCCHAFTGYFL---RNLAQL----D 167 (307)
T ss_dssp -------------TT---H--HHH------H-----HHHHHHHHHHHHHTCCBEEEECCEETTTTG---GGTTCT----T
T ss_pred -------------Cc---c--hhH------H-----HHHHHHHHHHHHcCCCeEEEEcceeecccc---cccccc----c
Confidence 00 0 011 1 223334444444589999999999987432 121110 0
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
......+.+ .++++++...++++++|++++++.++..+.. .+++|++.++. +++|+.|+++.+.+..|+.
T Consensus 168 --~~~~~~~~~-~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~~~~-~~~s~~e~~~~~~~~~g~~ 237 (307)
T 2gas_A 168 --ATDPPRDKV-VILGDGNVKGAYVTEADVGTFTIRAANDPNT----LNKAVHIRLPK-NYLTQNEVIALWEKKIGKT 237 (307)
T ss_dssp --CSSCCSSEE-EEETTSCSEEEEECHHHHHHHHHHHHTCGGG----TTEEEECCCGG-GEEEHHHHHHHHHHHHTSC
T ss_pred --cccCCCCeE-EEecCCCcceEEeeHHHHHHHHHHHHcCccc----cCceEEEeCCC-CcCCHHHHHHHHHHHhCCC
Confidence 000011222 2345667789999999999999998865432 24677776531 5899999999999999875
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=178.80 Aligned_cols=230 Identities=14% Similarity=0.180 Sum_probs=149.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|||||||+|+++++.|++++++| +++.+.. .++.... ......++.++.+|+.++ +
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V---~~l~R~~~~~~~~~~~~~~-----~~l~~~~v~~v~~D~~d~------~ 69 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPT---FLLVRESTASSNSEKAQLL-----ESFKASGANIVHGSIDDH------A 69 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCE---EEECCCCCTTTTHHHHHHH-----HHHHTTTCEEECCCTTCH------H
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCE---EEEECCcccccCHHHHHHH-----HHHHhCCCEEEEeccCCH------H
Confidence 5789999999999999999999988654 4443321 1111110 011234788999999987 8
Q ss_pred HHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 185 LADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
.+..+++++|+|||+|+.. ++.++.+++++|++.+++++||+ |+ ++... +|. .+.
T Consensus 70 ~l~~~~~~~d~vi~~a~~~------------~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~---~~~-----~~~- 124 (308)
T 1qyc_A 70 SLVEAVKNVDVVISTVGSL------------QIESQVNIIKAIKEVGTVKRFFP-SE---FGNDV---DNV-----HAV- 124 (308)
T ss_dssp HHHHHHHTCSEEEECCCGG------------GSGGGHHHHHHHHHHCCCSEEEC-SC---CSSCT---TSC-----CCC-
T ss_pred HHHHHHcCCCEEEECCcch------------hhhhHHHHHHHHHhcCCCceEee-cc---cccCc---ccc-----ccC-
Confidence 8888889999999999863 26788999999998633999984 43 33211 110 000
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
.+ . ... | .+|..+|...+..+++++++||+.+++.....+....
T Consensus 125 ------------~p---~--~~~------y-----~sK~~~e~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-------- 168 (308)
T 1qyc_A 125 ------------EP---A--KSV------F-----EVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAG-------- 168 (308)
T ss_dssp ------------TT---H--HHH------H-----HHHHHHHHHHHHHTCCBEEEECCEEHHHHTTTTTCTT--------
T ss_pred ------------Cc---c--hhH------H-----HHHHHHHHHHHhcCCCeEEEEeceecccccccccccc--------
Confidence 00 0 011 1 2233344444445899999999999885432111110
Q ss_pred eeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 345 IILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 345 i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
......+.. .++++++...++++++|++++++.++..+.. .+++|+++++. +++|+.|+++.+.+..|+.
T Consensus 169 -~~~~~~~~~-~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~g~~-~~~s~~e~~~~~~~~~g~~ 238 (308)
T 1qyc_A 169 -LTAPPRDKV-VILGDGNARVVFVKEEDIGTFTIKAVDDPRT----LNKTLYLRLPA-NTLSLNELVALWEKKIDKT 238 (308)
T ss_dssp -CSSCCSSEE-EEETTSCCEEEEECHHHHHHHHHTTSSCGGG----TTEEEECCCGG-GEEEHHHHHHHHHHHTTSC
T ss_pred -ccCCCCCce-EEecCCCceEEEecHHHHHHHHHHHHhCccc----cCeEEEEeCCC-CccCHHHHHHHHHHHhCCC
Confidence 000011222 2346677889999999999999887754322 24788876532 5899999999999999965
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-19 Score=167.06 Aligned_cols=201 Identities=11% Similarity=0.058 Sum_probs=137.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|+|||||||+|++++++|++.+. +|+++.+... .... ....++.++.+|++++ +.+..+.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~---~V~~~~r~~~-----~~~~----~~~~~~~~~~~D~~~~------~~~~~~~ 65 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDSS-----RLPS----EGPRPAHVVVGDVLQA------ADVDKTV 65 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCGG-----GSCS----SSCCCSEEEESCTTSH------HHHHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC---eEEEEEeChh-----hccc----ccCCceEEEEecCCCH------HHHHHHH
Confidence 7899999999999999999999875 5565543210 0110 1135788999999987 8888889
Q ss_pred cCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccccc
Q 042694 191 KEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVS 270 (554)
Q Consensus 191 ~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~ 270 (554)
+++|+|||+|+....... .++|+.++.+++++|++. ++++|||+||.++++...+ .
T Consensus 66 ~~~d~vi~~a~~~~~~~~----~~~n~~~~~~~~~~~~~~-~~~~~v~~Ss~~~~~~~~~----~--------------- 121 (206)
T 1hdo_A 66 AGQDAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKAH-GVDKVVACTSAFLLWDPTK----V--------------- 121 (206)
T ss_dssp TTCSEEEECCCCTTCCSC----CCHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCTTC----S---------------
T ss_pred cCCCEEEECccCCCCCCc----cchHHHHHHHHHHHHHHh-CCCeEEEEeeeeeccCccc----c---------------
Confidence 999999999997654221 358999999999999984 7899999999988765321 0
Q ss_pred cccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeec
Q 042694 271 NSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYG 350 (554)
Q Consensus 271 ~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~ 350 (554)
+. .... |..+|..+|...+..+++++++||+.++. .. ..+.. ....
T Consensus 122 ------~~-----~~~~----------y~~~K~~~e~~~~~~~i~~~~lrp~~~~~-~~--~~~~~---------~~~~- 167 (206)
T 1hdo_A 122 ------PP-----RLQA----------VTDDHIRMHKVLRESGLKYVAVMPPHIGD-QP--LTGAY---------TVTL- 167 (206)
T ss_dssp ------CG-----GGHH----------HHHHHHHHHHHHHHTCSEEEEECCSEEEC-CC--CCSCC---------EEES-
T ss_pred ------cc-----cchh----------HHHHHHHHHHHHHhCCCCEEEEeCCcccC-CC--CCcce---------Eecc-
Confidence 00 0011 22334444444445689999999999842 21 11110 0000
Q ss_pred cceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 351 KGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 351 ~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+ ..+. .++++++|+|++++.++..+. ..+++||++++
T Consensus 168 -~------~~~~--~~~i~~~Dva~~~~~~~~~~~----~~g~~~~i~~g 204 (206)
T 1hdo_A 168 -D------GRGP--SRVISKHDLGHFMLRCLTTDE----YDGHSTYPSHQ 204 (206)
T ss_dssp -S------SCSS--CSEEEHHHHHHHHHHTTSCST----TTTCEEEEECC
T ss_pred -c------CCCC--CCccCHHHHHHHHHHHhcCcc----ccccceeeecc
Confidence 0 1111 489999999999998876532 23589999886
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=172.38 Aligned_cols=210 Identities=18% Similarity=0.137 Sum_probs=141.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+|+|||||||||++++++|++.+.. .+|+++++..- ... .....++.++.+|++++ ++++
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~-~~V~~~~r~~~-----~~~----~~~~~~~~~~~~D~~d~------~~~~ 79 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLF-SKVTLIGRRKL-----TFD----EEAYKNVNQEVVDFEKL------DDYA 79 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCC-SEEEEEESSCC-----CCC----SGGGGGCEEEECCGGGG------GGGG
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCC-CEEEEEEcCCC-----Ccc----ccccCCceEEecCcCCH------HHHH
Confidence 46789999999999999999999998861 14555543210 000 00123678899999987 7788
Q ss_pred HHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccc
Q 042694 188 VIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKEN 267 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~ 267 (554)
.+++++|+|||+|+........+..+++|+.|+.+++++|++ .+.++||++||.++++...
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~iv~~SS~~~~~~~~------------------ 140 (242)
T 2bka_A 80 SAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKA-GGCKHFNLLSSKGADKSSN------------------ 140 (242)
T ss_dssp GGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHH-TTCCEEEEECCTTCCTTCS------------------
T ss_pred HHhcCCCEEEECCCcccccCCcccceeeeHHHHHHHHHHHHH-CCCCEEEEEccCcCCCCCc------------------
Confidence 888899999999998766666788999999999999999988 4788999999987765210
Q ss_pred ccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCC-cEEEEccceeeecccCCcc-ccccCCCCccce
Q 042694 268 FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDI-PVVIIRPSVIESTCKEPFS-GWMEGNRMMDPI 345 (554)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~gl-p~~I~Rp~~V~g~~~~p~~-g~~~~~~~~~~i 345 (554)
..|..+|..+|...+..++ +++++||+.|+|+...+.. .+.. ...
T Consensus 141 ----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~vrpg~v~~~~~~~~~~~~~~-----~~~ 187 (242)
T 2bka_A 141 ----------------------------FLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLV-----RKF 187 (242)
T ss_dssp ----------------------------SHHHHHHHHHHHHHHTTCCSEEEEEECCEEECTTGGGSHHHHHH-----HHH
T ss_pred ----------------------------chHHHHHHHHHHHHHhcCCCCeEEEcCceecCCCCCCcHHHHHH-----HHh
Confidence 0122334444444444578 5999999999997543210 0100 000
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIAS 399 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~ 399 (554)
.+..+ . ......+++++|+|++++.++..... ..+|++.+
T Consensus 188 -----~~~~~---~-~~~~~~~~~~~dva~~~~~~~~~~~~-----~~~~~~~~ 227 (242)
T 2bka_A 188 -----FGSLP---D-SWASGHSVPVVTVVRAMLNNVVRPRD-----KQMELLEN 227 (242)
T ss_dssp -----HCSCC---T-TGGGGTEEEHHHHHHHHHHHHTSCCC-----SSEEEEEH
T ss_pred -----hcccC---c-cccCCcccCHHHHHHHHHHHHhCccc-----cCeeEeeH
Confidence 00111 0 11123589999999999998865322 34666644
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-19 Score=177.66 Aligned_cols=231 Identities=12% Similarity=0.129 Sum_probs=149.0
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.+++|+|||||||+|+++++.|++.+++| +++.+.. .++..... .....++.++.+|+.++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V---~~~~R~~~~~~~~~~~~~l~-----~~~~~~v~~v~~D~~d~------ 68 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPT---FIYARPLTPDSTPSSVQLRE-----EFRSMGVTIIEGEMEEH------ 68 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCE---EEEECCCCTTCCHHHHHHHH-----HHHHTTCEEEECCTTCH------
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcE---EEEECCcccccChHHHHHHH-----HhhcCCcEEEEecCCCH------
Confidence 46789999999999999999999988654 4443221 11111100 01124688999999987
Q ss_pred HHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCc
Q 042694 184 DLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSI 263 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~ 263 (554)
+.+..+++++|+|||+|+... +.++++++++|++.+++++||+ | +++... +|. .
T Consensus 69 ~~l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~---~~~-----~-- 122 (321)
T 3c1o_A 69 EKMVSVLKQVDIVISALPFPM------------ISSQIHIINAIKAAGNIKRFLP-S---DFGCEE---DRI-----K-- 122 (321)
T ss_dssp HHHHHHHTTCSEEEECCCGGG------------SGGGHHHHHHHHHHCCCCEEEC-S---CCSSCG---GGC-----C--
T ss_pred HHHHHHHcCCCEEEECCCccc------------hhhHHHHHHHHHHhCCccEEec-c---ccccCc---ccc-----c--
Confidence 889999999999999998632 7889999999998533899983 3 233211 110 0
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
+. ...... | .+|. .+|.+.+..+++++++||+.+++... +.+....
T Consensus 123 -------------~~---~p~~~~------y-~sK~----~~e~~~~~~~~~~~~lrp~~~~~~~~---~~~~~~~---- 168 (321)
T 3c1o_A 123 -------------PL---PPFESV------L-EKKR----IIRRAIEAAALPYTYVSANCFGAYFV---NYLLHPS---- 168 (321)
T ss_dssp -------------CC---HHHHHH------H-HHHH----HHHHHHHHHTCCBEEEECCEEHHHHH---HHHHCCC----
T ss_pred -------------cC---CCcchH------H-HHHH----HHHHHHHHcCCCeEEEEeceeccccc---ccccccc----
Confidence 00 000011 2 2233 33444434589999999999987432 1111100
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
......+.+ ..+++++...++++++|++++++.++..+.. .+++|+++++. +++|+.|+++.+.+.+|+.
T Consensus 169 --~~~~~~~~~-~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~g~~~~~~g~~-~~~t~~e~~~~~~~~~g~~ 238 (321)
T 3c1o_A 169 --PHPNRNDDI-VIYGTGETKFVLNYEEDIAKYTIKVACDPRC----CNRIVIYRPPK-NIISQNELISLWEAKSGLS 238 (321)
T ss_dssp --SSCCTTSCE-EEETTSCCEEEEECHHHHHHHHHHHHHCGGG----TTEEEECCCGG-GEEEHHHHHHHHHHHHTSC
T ss_pred --ccccccCce-EEecCCCcceeEeeHHHHHHHHHHHHhCccc----cCeEEEEeCCC-CcccHHHHHHHHHHHcCCc
Confidence 000112222 2345677789999999999999998875432 24778886531 5899999999999999975
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=175.45 Aligned_cols=223 Identities=14% Similarity=0.143 Sum_probs=147.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++|+|||||||+|+++++.|++.+.+| +++.+. ....+.+. ...+++++.+|+.++ +.+.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V---~~l~R~~~~~~~~~~~l--------~~~~v~~v~~Dl~d~------~~l~ 74 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPT---YVFTRPNSSKTTLLDEF--------QSLGAIIVKGELDEH------EKLV 74 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCE---EEEECTTCSCHHHHHHH--------HHTTCEEEECCTTCH------HHHH
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcE---EEEECCCCchhhHHHHh--------hcCCCEEEEecCCCH------HHHH
Confidence 589999999999999999999988654 444321 11112111 124678899999987 8899
Q ss_pred HHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccc
Q 042694 188 VIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKEN 267 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~ 267 (554)
.+++++|+|||+|+.. ++.++++++++|++.+++++||+ |+ ++... +| ..+
T Consensus 75 ~a~~~~d~vi~~a~~~------------~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~---~~-----~~~----- 125 (318)
T 2r6j_A 75 ELMKKVDVVISALAFP------------QILDQFKILEAIKVAGNIKRFLP-SD---FGVEE---DR-----INA----- 125 (318)
T ss_dssp HHHTTCSEEEECCCGG------------GSTTHHHHHHHHHHHCCCCEEEC-SC---CSSCT---TT-----CCC-----
T ss_pred HHHcCCCEEEECCchh------------hhHHHHHHHHHHHhcCCCCEEEe-ec---cccCc---cc-----ccC-----
Confidence 9999999999999863 26789999999998533899985 43 33211 11 000
Q ss_pred ccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceee
Q 042694 268 FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIIL 347 (554)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~ 347 (554)
. ...... | .+|..+|...+..+++++++||+.+++... +.+....
T Consensus 126 -----------~--~p~~~~------y-----~sK~~~e~~~~~~~~~~~~lr~~~~~~~~~---~~~~~~~-------- 170 (318)
T 2r6j_A 126 -----------L--PPFEAL------I-----ERKRMIRRAIEEANIPYTYVSANCFASYFI---NYLLRPY-------- 170 (318)
T ss_dssp -----------C--HHHHHH------H-----HHHHHHHHHHHHTTCCBEEEECCEEHHHHH---HHHHCTT--------
T ss_pred -----------C--CCcchh------H-----HHHHHHHHHHHhcCCCeEEEEcceehhhhh---hhhcccc--------
Confidence 0 000011 1 223344444445689999999999876321 1111110
Q ss_pred eeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 348 YYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 348 ~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
...+.. .++++++...++++++|++++++.++..+.. .+++|+++++. +.+|+.|+++.+.+..|++
T Consensus 171 -~~~~~~-~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~g~~-~~~s~~e~~~~~~~~~g~~ 237 (318)
T 2r6j_A 171 -DPKDEI-TVYGTGEAKFAMNYEQDIGLYTIKVATDPRA----LNRVVIYRPST-NIITQLELISRWEKKIGKK 237 (318)
T ss_dssp -CCCSEE-EEETTSCCEEEEECHHHHHHHHHHHTTCGGG----TTEEEECCCGG-GEEEHHHHHHHHHHHHTCC
T ss_pred -CCCCce-EEecCCCceeeEeeHHHHHHHHHHHhcCccc----cCeEEEecCCC-CccCHHHHHHHHHHHhCCC
Confidence 011222 2345677789999999999999988765332 24677776431 5899999999999999975
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-18 Score=167.20 Aligned_cols=239 Identities=13% Similarity=0.094 Sum_probs=156.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ..++.++.+|++++ ++
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~D~~~~------~~ 78 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYGA---KVVIADIADDHGQKVCNNIGS------PDVISFVHCDVTKD------ED 78 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCH------HH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCChhHHHHHHHHhCC------CCceEEEECCCCCH------HH
Confidence 5689999999999999999999999876 45555432 12222222211 13789999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc---------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF---------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
++.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||..++.
T Consensus 79 ~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 158 (278)
T 2bgk_A 79 VRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFT 158 (278)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTC
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccC
Confidence 776665 79999999997532 2567889999999999999998753 2467999999987755
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccce
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSV 323 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~ 323 (554)
...+ .. .. |..+|...+.+.+... ...|++++++|||.
T Consensus 159 ~~~~---------------------------~~------~~------Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~ 199 (278)
T 2bgk_A 159 AGEG---------------------------VS------HV------YTATKHAVLGLTTSLCTELGEYGIRVNCVSPYI 199 (278)
T ss_dssp CCTT---------------------------SC------HH------HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESC
T ss_pred CCCC---------------------------CC------cc------hHHHHHHHHHHHHHHHHHHhhcCcEEEEEEece
Confidence 3210 00 11 2222333333333222 13589999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVN 403 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~ 403 (554)
|+++........ .......+.. ..+.....+++++|+|++++.++..... ...+++|++.++ .
T Consensus 200 v~t~~~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gg--~ 262 (278)
T 2bgk_A 200 VASPLLTDVFGV------DSSRVEELAH-------QAANLKGTLLRAEDVADAVAYLAGDESK--YVSGLNLVIDGG--Y 262 (278)
T ss_dssp CSCCCCTTSSSC------CHHHHHHHHH-------HTCSSCSCCCCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT--G
T ss_pred ecchhhhhhccc------chhHHHHhhh-------cccccccccCCHHHHHHHHHHHcCcccc--cCCCCEEEECCc--c
Confidence 988653221110 0000000000 0011124578999999999988754321 224689999988 7
Q ss_pred cccHHHHHHHHHhH
Q 042694 404 PLVFQDLARLLHEH 417 (554)
Q Consensus 404 ~it~~e~~~~~~~~ 417 (554)
.+++.|+++.+.+.
T Consensus 263 ~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 263 TRTNPAFPTALKHG 276 (278)
T ss_dssp GGCCTHHHHHSCSC
T ss_pred cccCCccchhhhhh
Confidence 88999999887653
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-17 Score=158.60 Aligned_cols=203 Identities=14% Similarity=0.100 Sum_probs=129.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.+|+||||||||+||++++++|++.+. . +|+++.+.. +... .....++.++.+|++++ ++++.
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~-~-~V~~~~R~~-----~~~~----~~~~~~~~~~~~Dl~d~------~~~~~ 84 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQT-I-KQTLFARQP-----AKIH----KPYPTNSQIIMGDVLNH------AALKQ 84 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTT-E-EEEEEESSG-----GGSC----SSCCTTEEEEECCTTCH------HHHHH
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCC-c-eEEEEEcCh-----hhhc----ccccCCcEEEEecCCCH------HHHHH
Confidence 468999999999999999999999772 1 455554321 0111 11235789999999987 89999
Q ss_pred HhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccc
Q 042694 189 IAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENF 268 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~ 268 (554)
+++++|+|||+|+...+. ..++++++++++ .+.++||++||..+++...+...+ +.+..
T Consensus 85 ~~~~~D~vv~~a~~~~~~-----------~~~~~~~~~~~~-~~~~~iV~iSS~~~~~~~~~~~~~--~~~~~------- 143 (236)
T 3qvo_A 85 AMQGQDIVYANLTGEDLD-----------IQANSVIAAMKA-CDVKRLIFVLSLGIYDEVPGKFVE--WNNAV------- 143 (236)
T ss_dssp HHTTCSEEEEECCSTTHH-----------HHHHHHHHHHHH-TTCCEEEEECCCCC------------------------
T ss_pred HhcCCCEEEEcCCCCchh-----------HHHHHHHHHHHH-cCCCEEEEEecceecCCCCccccc--chhhc-------
Confidence 999999999999874332 347789999998 478999999999988754210000 00000
Q ss_pred cccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeee
Q 042694 269 VSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILY 348 (554)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~ 348 (554)
.. .+...|..+| ......|++++++|||.+++..... + ..
T Consensus 144 --------~~--------------~~~~~~~~~~----~~l~~~gi~~~~vrPg~i~~~~~~~---~-----------~~ 183 (236)
T 3qvo_A 144 --------IG--------------EPLKPFRRAA----DAIEASGLEYTILRPAWLTDEDIID---Y-----------EL 183 (236)
T ss_dssp ---------C--------------GGGHHHHHHH----HHHHTSCSEEEEEEECEEECCSCCC---C-----------EE
T ss_pred --------cc--------------chHHHHHHHH----HHHHHCCCCEEEEeCCcccCCCCcc---e-----------EE
Confidence 00 0111122333 3334569999999999998753211 0 00
Q ss_pred eccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 349 YGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 349 ~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...+ ......+++++|||++++.++..+.. ..+++|+++++
T Consensus 184 ~~~~--------~~~~~~~i~~~DvA~~i~~ll~~~~~---~~g~~~~i~~~ 224 (236)
T 3qvo_A 184 TSRN--------EPFKGTIVSRKSVAALITDIIDKPEK---HIGENIGINQP 224 (236)
T ss_dssp ECTT--------SCCSCSEEEHHHHHHHHHHHHHSTTT---TTTEEEEEECS
T ss_pred eccC--------CCCCCcEECHHHHHHHHHHHHcCccc---ccCeeEEecCC
Confidence 0011 11113578999999999998876441 23689999987
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-17 Score=162.52 Aligned_cols=241 Identities=14% Similarity=0.106 Sum_probs=146.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++|+|+||||+|+||++++++|++.|. +|+++++ ...+.+.+. ...++.++.+|++++ +..
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dv~~~------~~~ 66 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD---TVIGTARRTEALDDLVAA--------YPDRAEAISLDVTDG------ERI 66 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSGGGGHHHHHH--------CTTTEEEEECCTTCH------HHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHh--------ccCCceEEEeeCCCH------HHH
Confidence 578999999999999999999999886 4555443 223333332 234788999999988 777
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchH----HHHHHHHHHHcCCCceEEEEeeceecccc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRG----PCRLMEFAKQCNKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~g----t~~ll~la~~~~~~k~~v~vST~~v~~~~ 248 (554)
+.+.+ ++|+|||+||.... .+.++..+++|+.| ++.++..+++ .+..++|++||.......
T Consensus 67 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~~~iv~~sS~~~~~~~ 145 (281)
T 3m1a_A 67 DVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRE-RGSGSVVNISSFGGQLSF 145 (281)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEECCGGGTCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCEEEEEcCccccCCC
Confidence 66665 78999999997432 35678899999999 5555555555 367899999997654321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~ 325 (554)
+... .|..+|...+.+++.+. ...|+++.++|||.|.
T Consensus 146 ----------------------------~~~~------------~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~ 185 (281)
T 3m1a_A 146 ----------------------------AGFS------------AYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFR 185 (281)
T ss_dssp ----------------------------TTCH------------HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC
T ss_pred ----------------------------CCch------------HHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccc
Confidence 1111 12223333333333322 1258999999999997
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcc
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPL 405 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~i 405 (554)
++...+....... ...........+. + . ........+++++|+|++++.++.... .+..|+++++ ...
T Consensus 186 t~~~~~~~~~~~~--~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~dva~a~~~~~~~~~-----~~~~~~l~s~--~~~ 253 (281)
T 3m1a_A 186 TNLFGKGAAYFSE--ENPAYAEKVGPTR-Q-L-VQGSDGSQPGDPAKAAAAIRLALDTEK-----TPLRLALGGD--AVD 253 (281)
T ss_dssp CTTTCCCCEEECC--BCTTTHHHHHHHH-H-H-HHC-----CBCHHHHHHHHHHHHHSSS-----CCSEEEESHH--HHH
T ss_pred cccccccccccCC--cchhhHHHhHHHH-H-H-HhhccCCCCCCHHHHHHHHHHHHhCCC-----CCeEEecCch--HHH
Confidence 7543321111000 0000000000000 0 0 011122457789999999999886533 2468999887 444
Q ss_pred cHHHHHHHHHhHhc
Q 042694 406 VFQDLARLLHEHYS 419 (554)
Q Consensus 406 t~~e~~~~~~~~~~ 419 (554)
...+....+.+.++
T Consensus 254 ~i~g~~~~i~~~~~ 267 (281)
T 3m1a_A 254 FLTGHLDSVRAELT 267 (281)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55666655555443
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-18 Score=167.47 Aligned_cols=235 Identities=9% Similarity=0.057 Sum_probs=143.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|||||||||||++++++|++.+. +|+++++.. .. ... .+.+|++++ +.++.+
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~---~V~~~~r~~--------~~-----~~~---~~~~D~~~~------~~~~~~ 55 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGH---TVIGIDRGQ--------AD-----IEA---DLSTPGGRE------TAVAAV 55 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSS--------SS-----EEC---CTTSHHHHH------HHHHHH
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEeCCh--------hH-----ccc---cccCCcccH------HHHHHH
Confidence 36899999999999999999999875 456554321 00 000 156788776 667666
Q ss_pred hc----CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc--eeeccccCCC
Q 042694 190 AK----EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG--KVMEKPFCMG 260 (554)
Q Consensus 190 ~~----~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~--~i~E~~~~~~ 260 (554)
.+ ++|+|||+||......+++..+++|+.|+.++++++... .+.+++|++||..+++.... ...|....
T Consensus 56 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~-- 133 (255)
T 2dkn_A 56 LDRCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLA-- 133 (255)
T ss_dssp HHHHTTCCSEEEECCCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHH--
T ss_pred HHHcCCCccEEEECCCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcc--
Confidence 65 899999999987645678899999999999999988753 24579999999988765311 00000000
Q ss_pred CCcccccccccccCCCCCCChHHH--H-HHh-hhccCCCCchHHHHHHHhhhhh---cCCCcEEEEccceeeecccCCcc
Q 042694 261 DSIAKENFVSNSRRLIPTLDVENE--M-KLA-LESKEFSTDGEVAQKMKGLGLE---RGDIPVVIIRPSVIESTCKEPFS 333 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~d~~~~--~-~~~-~~~k~~~~~k~~ae~l~e~~~~---~~glp~~I~Rp~~V~g~~~~p~~ 333 (554)
.+.... . ... .....|..+|...+.+++.... ..|++++++||+.|+++....
T Consensus 134 ------------------~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~-- 193 (255)
T 2dkn_A 134 ------------------GDEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQA-- 193 (255)
T ss_dssp ------------------TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHH--
T ss_pred ------------------cchhhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhh--
Confidence 000000 0 000 0000233445555555544332 258999999999998864311
Q ss_pred ccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHH
Q 042694 334 GWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQ 408 (554)
Q Consensus 334 g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~ 408 (554)
+.... .... ....+. + ...++++++|+|++++.++..... ...+++|+++++ .+++++
T Consensus 194 -~~~~~-~~~~--------~~~~~~--~-~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gg--~~~~~~ 251 (255)
T 2dkn_A 194 -SKADP-RYGE--------STRRFV--A-PLGRGSEPREVAEAIAFLLGPQAS--FIHGSVLFVDGG--MDALMR 251 (255)
T ss_dssp -HHHCT-TTHH--------HHHSCC--C-TTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT--HHHHHC
T ss_pred -cccch-hhHH--------HHHHHH--H-HhcCCCCHHHHHHHHHHHhCCCcc--cceeeEEEecCC--eEeeee
Confidence 10100 0000 000000 1 224789999999999998865421 123689999987 555543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=151.86 Aligned_cols=203 Identities=13% Similarity=0.093 Sum_probs=132.3
Q ss_pred CcEEEEecccccccHHHHHHHH-hhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKIL-RTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL-~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+|+|+||||||++|++++++|+ +.+. +|+++.+..-.++.+.. ....++.++.+|++++ +++..
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~---~V~~~~r~~~~~~~~~~------~~~~~~~~~~~D~~d~------~~~~~ 69 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDM---HITLYGRQLKTRIPPEI------IDHERVTVIEGSFQNP------GXLEQ 69 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCC---EEEEEESSHHHHSCHHH------HTSTTEEEEECCTTCH------HHHHH
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCc---eEEEEecCccccchhhc------cCCCceEEEECCCCCH------HHHHH
Confidence 3569999999999999999999 7675 45555433110111110 0235789999999987 88899
Q ss_pred HhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccc
Q 042694 189 IAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENF 268 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~ 268 (554)
+++++|+|||+|+.. |+. ++++++.+++ .+.++||++||..++....+...+
T Consensus 70 ~~~~~d~vv~~ag~~------------n~~-~~~~~~~~~~-~~~~~iv~iSs~~~~~~~~~~~~~-------------- 121 (221)
T 3r6d_A 70 AVTNAEVVFVGAMES------------GSD-MASIVKALSR-XNIRRVIGVSMAGLSGEFPVALEK-------------- 121 (221)
T ss_dssp HHTTCSEEEESCCCC------------HHH-HHHHHHHHHH-TTCCEEEEEEETTTTSCSCHHHHH--------------
T ss_pred HHcCCCEEEEcCCCC------------Chh-HHHHHHHHHh-cCCCeEEEEeeceecCCCCccccc--------------
Confidence 999999999999864 344 8999999998 478999999999887643210000
Q ss_pred cccccCCCCCCChHHHHHHhhhccCCCC-chHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceee
Q 042694 269 VSNSRRLIPTLDVENEMKLALESKEFST-DGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIIL 347 (554)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~~~~~~k~~~~-~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~ 347 (554)
... .... .|..+|..+|...+..+++++++|||.|+++.. .+.. ..
T Consensus 122 ---------------~~~------~~~~~~y~~~K~~~e~~~~~~~i~~~~vrpg~v~~~~~---~~~~---------~~ 168 (221)
T 3r6d_A 122 ---------------WTF------DNLPISYVQGERQARNVLRESNLNYTILRLTWLYNDPE---XTDY---------EL 168 (221)
T ss_dssp ---------------HHH------HTSCHHHHHHHHHHHHHHHHSCSEEEEEEECEEECCTT---CCCC---------EE
T ss_pred ---------------ccc------cccccHHHHHHHHHHHHHHhCCCCEEEEechhhcCCCC---Ccce---------ee
Confidence 000 0011 244455555555556799999999999987521 1100 00
Q ss_pred eeccceeeeeecCCCcccccchhhHHHHHHHHHH--HHhcccCCCCCeEEEeeCC
Q 042694 348 YYGKGQLTGFLVDPNGILDVVPADMVVNATLAAI--AQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 348 ~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~--~~~~~~~~~~~~vyn~~~~ 400 (554)
...+ ......+++.+|+|++++.++ ..+.. ...+.+.++++
T Consensus 169 -~~~~--------~~~~~~~~~~~dvA~~~~~l~~~~~~~~---~~~~~~~i~~~ 211 (221)
T 3r6d_A 169 -IPEG--------AQFNDAQVSREAVVKAIFDILHAADETP---FHRTSIGVGEP 211 (221)
T ss_dssp -ECTT--------SCCCCCEEEHHHHHHHHHHHHTCSCCGG---GTTEEEEEECT
T ss_pred -ccCC--------ccCCCceeeHHHHHHHHHHHHHhcChhh---hhcceeeecCC
Confidence 0000 011123788899999999988 55332 12467777765
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=159.06 Aligned_cols=224 Identities=12% Similarity=0.100 Sum_probs=142.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||++++++|++.|. +|+++++. ..+.+.+... ....++..+.+|++++ ++
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~------~~ 74 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINADAANHVVDEIQ-----QLGGQAFACRCDITSE------QE 74 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESCHHHHHHHHHHHH-----HTTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHHHH-----HhCCceEEEEcCCCCH------HH
Confidence 4678999999999999999999999875 45655432 1222222211 0234788899999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||...+....
T Consensus 75 ~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~ 154 (255)
T 1fmc_A 75 LSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI 154 (255)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCC
Confidence 776665 89999999997543 3567889999999999999988521 2568999999987654311
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeee
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIES 326 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g 326 (554)
.. .. |..+|...+.+.+... ...|+++.++|||.|++
T Consensus 155 ----------------------------~~------~~------Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t 194 (255)
T 1fmc_A 155 ----------------------------NM------TS------YASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILT 194 (255)
T ss_dssp ----------------------------TC------HH------HHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCS
T ss_pred ----------------------------CC------cc------cHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcc
Confidence 11 11 2222333333333222 23589999999999987
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCccc
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLV 406 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it 406 (554)
+..... .. .........+ .-...+++++|+|++++.++..... ...+++|++.++ ..+|
T Consensus 195 ~~~~~~---~~-----~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gg--~~~s 253 (255)
T 1fmc_A 195 DALKSV---IT-----PEIEQKMLQH---------TPIRRLGQPQDIANAALFLCSPAAS--WVSGQILTVSGG--GVQE 253 (255)
T ss_dssp HHHHTT---CC-----HHHHHHHHHT---------CSSCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT--SCCC
T ss_pred hhhhhc---cC-----hHHHHHHHhc---------CCcccCCCHHHHHHHHHHHhCCccc--cCCCcEEEECCc--eecc
Confidence 543210 00 0000000000 0113477899999999888754321 123579999988 4444
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-16 Score=155.89 Aligned_cols=249 Identities=14% Similarity=0.097 Sum_probs=139.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ......++.++.+|++++ ++
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~------~~ 72 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGA---KVTITGRHAERLEETRQQILA--AGVSEQNVNSVVADVTTD------AG 72 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH--TTCCGGGEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh--cccCCCceeEEecccCCH------HH
Confidence 4678999999999999999999999886 45555432 12222222100 000124688999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCC-----------chhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTT-----------FDERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~-----------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
.+.+.+ ++|++||+||... ..+.++..+++|+.|+.++++.+... .+ .++|++||...
T Consensus 73 ~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~ 151 (278)
T 1spx_A 73 QDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIAS 151 (278)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTS
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccc
Confidence 777665 8999999999753 23457788999999999999988653 13 79999999765
Q ss_pred -cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccce
Q 042694 245 -NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 245 -~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
+... +....|...+... ..+++.++.+.. ..|+++.++|||.
T Consensus 152 ~~~~~----------------------------~~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~ 194 (278)
T 1spx_A 152 GLHAT----------------------------PDFPYYSIAKAAI--------DQYTRNTAIDLI-QHGIRVNSISPGL 194 (278)
T ss_dssp SSSCC----------------------------TTSHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEECC
T ss_pred cccCC----------------------------CCccHHHHHHHHH--------HHHHHHHHHHHH-hcCcEEEEEecCc
Confidence 3321 1111111111111 112333333322 3489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVN 403 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~ 403 (554)
|.++...... .... ......... ....... + ...+++++|+|++++.++...... -..++++++.++ .
T Consensus 195 v~t~~~~~~~--~~~~-~~~~~~~~~-~~~~~~~---p--~~~~~~~~dvA~~v~~l~s~~~~~-~~tG~~~~vdgG--~ 262 (278)
T 1spx_A 195 VATGFGSAMG--MPEE-TSKKFYSTM-ATMKECV---P--AGVMGQPQDIAEVIAFLADRKTSS-YIIGHQLVVDGG--S 262 (278)
T ss_dssp BCCCC-----------------HHHH-HHHHHHC---T--TSSCBCHHHHHHHHHHHHCHHHHT-TCCSCEEEESTT--G
T ss_pred ccCccccccc--cCch-hhhhhhHHH-HHHHhcC---C--CcCCCCHHHHHHHHHHHcCccccC-cccCcEEEECCC--c
Confidence 9765321100 0000 000000000 0000000 1 124788999999998887643310 023589999988 6
Q ss_pred cccHHHHHHHHHhH
Q 042694 404 PLVFQDLARLLHEH 417 (554)
Q Consensus 404 ~it~~e~~~~~~~~ 417 (554)
.+++.++.+.+.+.
T Consensus 263 ~~~~~~~~~~~~~~ 276 (278)
T 1spx_A 263 SLIMGLHCQDFAKL 276 (278)
T ss_dssp GGC-----------
T ss_pred ccccCcccccHHHH
Confidence 88999999888764
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-16 Score=153.14 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=137.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCch--hhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSY--QAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~--~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.++++|+||||||+||++++++|++.|. +|+++++. ..+.+.+...... ......++.++.+|++++
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~------ 75 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGA---TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEA------ 75 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSH------
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCH------
Confidence 4678999999999999999999999875 45655432 2222222221100 000014688999999987
Q ss_pred HHHHHHhcC-------c-cEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeecee
Q 042694 184 DLADVIAKE-------V-DVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAYV 244 (554)
Q Consensus 184 ~~~~~l~~~-------v-diViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~v 244 (554)
+.++.+.++ + |+|||+||.... .+.++..+++|+.|+.++++++... .+ ..++|++||.+.
T Consensus 76 ~~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~ 155 (264)
T 2pd6_A 76 RAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVG 155 (264)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhh
Confidence 666666553 4 999999997643 3567889999999999999998753 12 468999999755
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEcc
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRP 321 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp 321 (554)
..... .. . .|..+|...+.+.+... ...|+++.++||
T Consensus 156 ~~~~~----------------------------~~------~------~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~P 195 (264)
T 2pd6_A 156 KVGNV----------------------------GQ------T------NYAASKAGVIGLTQTAARELGRHGIRCNSVLP 195 (264)
T ss_dssp HHCCT----------------------------TB------H------HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred ccCCC----------------------------CC------h------hhHHHHHHHHHHHHHHHHHhhhcCeEEEEEee
Confidence 32210 01 1 12223333333333222 125899999999
Q ss_pred ceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCC
Q 042694 322 SVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSV 401 (554)
Q Consensus 322 ~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~ 401 (554)
|.|+++.....+.. ....+..+ . + ...+++++|+|++++.++..... ...+.++++.++
T Consensus 196 g~v~t~~~~~~~~~---------~~~~~~~~-~------~--~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gg- 254 (264)
T 2pd6_A 196 GFIATPMTQKVPQK---------VVDKITEM-I------P--MGHLGDPEDVADVVAFLASEDSG--YITGTSVEVTGG- 254 (264)
T ss_dssp CSBCSCC-------------------CTGGG-C------T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT-
T ss_pred ecccccchhhcCHH---------HHHHHHHh-C------C--CCCCCCHHHHHHHHHHHcCCccc--CCCCCEEEECCC-
Confidence 99988644221110 00000000 0 1 12467899999999888754321 234689999887
Q ss_pred CCcccHHH
Q 042694 402 VNPLVFQD 409 (554)
Q Consensus 402 ~~~it~~e 409 (554)
..+++..
T Consensus 255 -~~~~~~~ 261 (264)
T 2pd6_A 255 -LFMAENL 261 (264)
T ss_dssp -C------
T ss_pred -ceecccc
Confidence 4455443
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=156.72 Aligned_cols=223 Identities=14% Similarity=0.125 Sum_probs=140.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||++++++|++.+. +|+++++. ..+.+.+... ....++.++.+|++++ ++
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~l~-----~~~~~~~~~~~D~~~~------~~ 76 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGA---RVIIADLDEAMATKAVEDLR-----MEGHDVSSVVMDVTNT------ES 76 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH-----HTTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHH-----hcCCceEEEEecCCCH------HH
Confidence 4688999999999999999999999875 56655432 1222222111 0134788999999987 76
Q ss_pred HHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ ++|+|||+||... + .+.++..+++|+.|+.++++.+... .+..++|++||.+....
T Consensus 77 ~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 156 (260)
T 3awd_A 77 VQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIV 156 (260)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhccc
Confidence 666654 7999999999654 1 2456788999999999999988642 25679999999865432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEcccee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVI 324 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V 324 (554)
..+ .+.. .|..+|...+.+.+.+. ...|+++.++|||.|
T Consensus 157 ~~~--------------------------~~~~------------~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v 198 (260)
T 3awd_A 157 NRP--------------------------QQQA------------AYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYI 198 (260)
T ss_dssp CSS--------------------------SCCH------------HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCB
T ss_pred CCC--------------------------CCcc------------ccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeee
Confidence 110 0001 12222333333333322 125899999999999
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+++...+ .+.. ......+..+ . + ...+++++|+|++++.++..... ...+.+|++.++
T Consensus 199 ~t~~~~~--~~~~-----~~~~~~~~~~-~------~--~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gg 256 (260)
T 3awd_A 199 ETTLTRF--GMEK-----PELYDAWIAG-T------P--MGRVGQPDEVASVVQFLASDAAS--LMTGAIVNVDAG 256 (260)
T ss_dssp CCTTTHH--HHTC-----HHHHHHHHHT-C------T--TSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred ccchhhc--ccCC-----hHHHHHHHhc-C------C--cCCCCCHHHHHHHHHHHhCchhc--cCCCcEEEECCc
Confidence 8854320 0000 0000000000 0 1 13478899999999888754321 224679999886
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-17 Score=161.13 Aligned_cols=239 Identities=12% Similarity=0.073 Sum_probs=149.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+... .....++.++.+|++++ ++
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~Dl~~~------~~ 90 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLGA---QCVIASRKMDVLKATAEQIS----SQTGNKVHAIQCDVRDP------DM 90 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH----HHHSSCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHH----HhcCCceEEEEeCCCCH------HH
Confidence 5789999999999999999999999876 45655432 1222222110 00135789999999987 76
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||.+.+..
T Consensus 91 ~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~ 170 (302)
T 1w6u_A 91 VQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG 170 (302)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccC
Confidence 666654 56999999996432 3467889999999999998888542 24579999999866432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEcccee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVI 324 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V 324 (554)
.. .. .. |..+|...+.+++... ...|+++.++|||.|
T Consensus 171 ~~----------------------------~~------~~------Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v 210 (302)
T 1w6u_A 171 SG----------------------------FV------VP------SASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPI 210 (302)
T ss_dssp CT----------------------------TC------HH------HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCB
T ss_pred CC----------------------------Cc------ch------hHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccC
Confidence 11 11 11 1222333333333222 125899999999999
Q ss_pred eecc-cCCc-cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCC
Q 042694 325 ESTC-KEPF-SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVV 402 (554)
Q Consensus 325 ~g~~-~~p~-~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~ 402 (554)
.++. .... +... . ......+ . + ...+++++|+|++++.++..... ...+++|++.++
T Consensus 211 ~t~~~~~~~~~~~~-------~-~~~~~~~-~------p--~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gg-- 269 (302)
T 1w6u_A 211 KTKGAFSRLDPTGT-------F-EKEMIGR-I------P--CGRLGTVEELANLAAFLCSDYAS--WINGAVIKFDGG-- 269 (302)
T ss_dssp CC------CCTTSH-------H-HHHHHTT-C------T--TSSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT--
T ss_pred CCcchhhhcccchh-------h-HHHHHhc-C------C--cCCCCCHHHHHHHHHHHcCCccc--ccCCCEEEECCC--
Confidence 7742 1110 1000 0 0000000 0 1 12477899999999887754321 123689999988
Q ss_pred CcccHHHHHHHHHhHhcc
Q 042694 403 NPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 403 ~~it~~e~~~~~~~~~~~ 420 (554)
..+++.++++.+.+..++
T Consensus 270 ~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 270 EEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp HHHHHHSTTGGGGGCCHH
T ss_pred eeeccCCccccchhhccc
Confidence 677877777766665543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-16 Score=151.23 Aligned_cols=217 Identities=14% Similarity=0.153 Sum_probs=140.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||||+||++++++|++.|. +|+++++.. .+.+.+. ..++.++.+|++++ +.
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~---------~~~~~~~~~D~~~~------~~ 66 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGA---KVVAVTRTNSDLVSLAKE---------CPGIEPVCVDLGDW------DA 66 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH---------STTCEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHh---------ccCCCcEEecCCCH------HH
Confidence 4678999999999999999999999876 456654321 2222221 12456779999987 77
Q ss_pred HHHHhc---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeeceecccccce
Q 042694 186 ADVIAK---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAYVNGQRRGK 251 (554)
Q Consensus 186 ~~~l~~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~v~~~~~~~ 251 (554)
.+.+.+ .+|+|||+||.... .+.++..+++|+.|+.++++.+... .+ ..++|++||..++....
T Consensus 67 ~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-- 144 (244)
T 1cyd_A 67 TEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP-- 144 (244)
T ss_dssp HHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT--
T ss_pred HHHHHHHcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCC--
Confidence 777775 58999999997542 3467889999999999999988653 13 57999999987654321
Q ss_pred eeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeecc
Q 042694 252 VMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 252 i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~~ 328 (554)
.. .. |..+|...+.+++.+. ...++++.++||+.|+++.
T Consensus 145 --------------------------~~------~~------Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~ 186 (244)
T 1cyd_A 145 --------------------------NL------IT------YSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDM 186 (244)
T ss_dssp --------------------------TB------HH------HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHH
T ss_pred --------------------------Cc------ch------hHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcc
Confidence 00 11 2223333344433322 1248999999999998754
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... +.. ......+..+ ....++++++|+|++++.++..... ...++++++.++
T Consensus 187 ~~~~--~~~-----~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gG 240 (244)
T 1cyd_A 187 GKKV--SAD-----PEFARKLKER---------HPLRKFAEVEDVVNSILFLLSDRSA--STSGGGILVDAG 240 (244)
T ss_dssp HHHH--TCC-----HHHHHHHHHH---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCSSEEEESTT
T ss_pred cccc--ccC-----HHHHHHHHhc---------CCccCCCCHHHHHHHHHHHhCchhh--cccCCEEEECCC
Confidence 3110 000 0000000011 1125789999999999988765322 223578888766
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-16 Score=150.54 Aligned_cols=220 Identities=13% Similarity=0.083 Sum_probs=127.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ...++.++.+|++++ +.
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~ 77 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA---VIHTCARNEYELNECLSKWQK-----KGFQVTGSVCDASLR------PE 77 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTSH------HH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCeeEEEECCCCCH------HH
Confidence 4678999999999999999999999876 45555432 12222222110 134688999999987 66
Q ss_pred HHHHh--------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIA--------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~--------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+. .++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||...+..
T Consensus 78 ~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~ 157 (266)
T 1xq1_A 78 REKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVS 157 (266)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-------
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccC
Confidence 66655 579999999997542 3467888999999999999998421 35689999999866442
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEcccee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVI 324 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V 324 (554)
.. ....| ..+|...+.+.+... ...|+++.++|||.|
T Consensus 158 ~~----------------------------~~~~Y------------~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v 197 (266)
T 1xq1_A 158 AS----------------------------VGSIY------------SATKGALNQLARNLACEWASDGIRANAVAPAVI 197 (266)
T ss_dssp -------------------------------CCHH------------HHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSC
T ss_pred CC----------------------------CCchH------------HHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCC
Confidence 11 11112 222333333332221 124899999999999
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+++...... .. ..... ..... + ...+++++|++++++.++..... ...++++++.++
T Consensus 198 ~t~~~~~~~---~~-----~~~~~----~~~~~---~--~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gG 254 (266)
T 1xq1_A 198 ATPLAEAVY---DD-----EFKKV----VISRK---P--LGRFGEPEEVSSLVAFLCMPAAS--YITGQTICVDGG 254 (266)
T ss_dssp C------------------------------------------CCGGGGHHHHHHHTSGGGT--TCCSCEEECCCC
T ss_pred ccchhhhhc---CH-----HHHHH----HHhcC---C--CCCCcCHHHHHHHHHHHcCcccc--CccCcEEEEcCC
Confidence 886432210 00 00000 00000 0 12467899999999887754321 223679999887
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-16 Score=150.35 Aligned_cols=217 Identities=14% Similarity=0.110 Sum_probs=122.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+||||||+|+||++++++|++.|. +|+++++ +..+.+.+.... ...++.++.+|++++ ++
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~ 72 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA---AVVVADINAEAAEAVAKQIVA-----DGGTAISVAVDVSDP------ES 72 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCEEEEEECCTTSH------HH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 5689999999999999999999999886 4555543 222333322211 245788999999998 77
Q ss_pred HHHHhc-------CccEEEEcCCCCC----------chhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----------FDERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
.+.+.+ ++|+|||+||... -.+.++..+++|+.|+..+.+.+... .+..++|++||...+
T Consensus 73 ~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 152 (253)
T 3qiv_A 73 AKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAW 152 (253)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCcccc
Confidence 776665 8999999999732 13567889999999966666655321 246789999998665
Q ss_pred ccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccc
Q 042694 246 GQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPS 322 (554)
Q Consensus 246 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~ 322 (554)
.... .|..+|...+.+.+... ...|+++.+++||
T Consensus 153 ~~~~-------------------------------------------~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG 189 (253)
T 3qiv_A 153 LYSN-------------------------------------------YYGLAKVGINGLTQQLSRELGGRNIRINAIAPG 189 (253)
T ss_dssp --------------------------------------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-
T ss_pred CCCc-------------------------------------------hhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEec
Confidence 2210 35555654444444332 2348999999999
Q ss_pred eeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 323 VIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 323 ~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.|.++....... ......+..+. ....+..++|++++++.++..... .-.+++|++.++
T Consensus 190 ~v~t~~~~~~~~--------~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~s~~~~--~~tG~~~~vdgG 248 (253)
T 3qiv_A 190 PIDTEANRTTTP--------KEMVDDIVKGL---------PLSRMGTPDDLVGMCLFLLSDEAS--WITGQIFNVDGG 248 (253)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHSGGGT--TCCSCEEEC---
T ss_pred CCcccchhhcCc--------HHHHHHHhccC---------CCCCCCCHHHHHHHHHHHcCcccc--CCCCCEEEECCC
Confidence 998754321100 00000001111 012355689999999888764332 224689999887
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-16 Score=150.13 Aligned_cols=223 Identities=16% Similarity=0.127 Sum_probs=137.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++++|+||||||+||++++++|++.|. +|+++++. ..+.+.+... .....++.++.+|++++ ++
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~------~~ 71 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGS---TVIITGTSGERAKAVAEEIA----NKYGVKAHGVEMNLLSE------ES 71 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHH----HHHCCCEEEEECCTTCH------HH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHHHH----hhcCCceEEEEccCCCH------HH
Confidence 4678999999999999999999999876 45555432 1222222110 00134788999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||.......
T Consensus 72 ~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~ 151 (248)
T 2pnf_A 72 INKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGN 151 (248)
T ss_dssp HHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCC
Confidence 776665 79999999997542 3467789999999997776655321 356899999997543221
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. ....|...+... ..+++.++++.. ..++++.++|||.|.++.
T Consensus 152 ~----------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~~i~v~~v~Pg~v~t~~ 194 (248)
T 2pnf_A 152 V----------------------------GQVNYSTTKAGL--------IGFTKSLAKELA-PRNVLVNAVAPGFIETDM 194 (248)
T ss_dssp T----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBCCGG
T ss_pred C----------------------------CCchHHHHHHHH--------HHHHHHHHHHhc-ccCeEEEEEEeceecCch
Confidence 1 000111111111 123333433332 248999999999997754
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...++. ........ .. + ...+++++|++++++.++..... ...+++|++.++
T Consensus 195 ~~~~~~---------~~~~~~~~-~~------~--~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gg 246 (248)
T 2pnf_A 195 TAVLSE---------EIKQKYKE-QI------P--LGRFGSPEEVANVVLFLCSELAS--YITGEVIHVNGG 246 (248)
T ss_dssp GGGSCH---------HHHHHHHH-TC------T--TSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhhccH---------HHHHHHHh-cC------C--CCCccCHHHHHHHHHHHhCchhh--cCCCcEEEeCCC
Confidence 321110 00000000 00 1 13578899999999888764321 223689998875
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=151.14 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=137.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEE-Ecc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFI-INA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~-~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+|+|+||||||+||++++++|++.|. +|++ .++ ...+.+.+.... ...++.++.+|++++ ++.
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~---~v~~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~ 66 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGC---KVLVNYARSAKAAEEVSKQIEA-----YGGQAITFGGDVSKE------ADV 66 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHHH-----HTCEEEEEECCTTSH------HHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCHHHHHHHHHHHHh-----cCCcEEEEeCCCCCH------HHH
Confidence 57899999999999999999999886 4454 332 222222222111 234788999999987 777
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||........
T Consensus 67 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~ 146 (244)
T 1edo_A 67 EAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNI 146 (244)
T ss_dssp HHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCC
Confidence 76665 79999999997642 2567889999999999999988653 2567999999975532210
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
....|...+... ..+++.++++.. ..|+++.++|||.|.++..
T Consensus 147 ----------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~~ 189 (244)
T 1edo_A 147 ----------------------------GQANYAAAKAGV--------IGFSKTAAREGA-SRNINVNVVCPGFIASDMT 189 (244)
T ss_dssp ----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHH-TTTEEEEEEEECSBCSHHH
T ss_pred ----------------------------CCccchhhHHHH--------HHHHHHHHHHhh-hcCCEEEEEeeCccccchh
Confidence 001111111111 123344443332 3589999999999977533
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..... ....... ... + ...+++++|+|++++.++..+.. ....+++|++.++
T Consensus 190 ~~~~~---------~~~~~~~-~~~------~--~~~~~~~~dva~~~~~l~~~~~~-~~~~G~~~~v~gG 241 (244)
T 1edo_A 190 AKLGE---------DMEKKIL-GTI------P--LGRTGQPENVAGLVEFLALSPAA-SYITGQAFTIDGG 241 (244)
T ss_dssp HTTCH---------HHHHHHH-TSC------T--TCSCBCHHHHHHHHHHHHHCSGG-GGCCSCEEEESTT
T ss_pred hhcCh---------HHHHHHh-hcC------C--CCCCCCHHHHHHHHHHHhCCCcc-CCcCCCEEEeCCC
Confidence 21110 0000000 001 0 12477899999999888743221 1123578998876
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=146.26 Aligned_cols=217 Identities=14% Similarity=0.188 Sum_probs=139.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++++|+||||||+||++++++|++.|. +|+++++. ..+.+.++. .++.++.+|++++ +.
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~---------~~~~~~~~D~~~~------~~ 66 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATGA---RVVAVSRTQADLDSLVREC---------PGIEPVCVDLGDW------EA 66 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHS---------TTCEEEECCTTCH------HH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHc---------CCCCEEEEeCCCH------HH
Confidence 4678999999999999999999999876 45555432 122222211 2456679999987 77
Q ss_pred HHHHhc---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeeceecccccce
Q 042694 186 ADVIAK---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAYVNGQRRGK 251 (554)
Q Consensus 186 ~~~l~~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~v~~~~~~~ 251 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..++|++||...+....
T Consensus 67 ~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-- 144 (244)
T 3d3w_A 67 TERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT-- 144 (244)
T ss_dssp HHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT--
T ss_pred HHHHHHHcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCC--
Confidence 777775 58999999997543 2467889999999999999888652 13 57899999976543211
Q ss_pred eeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeecc
Q 042694 252 VMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 252 i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~~ 328 (554)
.. . .|..+|...+.+++... ...|+++.++||+.|.++.
T Consensus 145 --------------------------~~------~------~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~ 186 (244)
T 3d3w_A 145 --------------------------NH------S------VYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSM 186 (244)
T ss_dssp --------------------------TB------H------HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTT
T ss_pred --------------------------CC------c------hHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccc
Confidence 11 1 12223333444433322 1248999999999998754
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
... .+... .....+..+ .....+++++|+|++++.++..... ...+++|++.++
T Consensus 187 ~~~--~~~~~-----~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gG 240 (244)
T 3d3w_A 187 GQA--TWSDP-----HKAKTMLNR---------IPLGKFAEVEHVVNAILFLLSDRSG--MTTGSTLPVEGG 240 (244)
T ss_dssp HHH--HSCST-----THHHHHHHT---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhh--hccCh-----HHHHHHHhh---------CCCCCCcCHHHHHHHHHHHcCcccc--CCCCCEEEECCC
Confidence 211 00000 000000000 0123688999999999988764321 223679999876
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=154.47 Aligned_cols=230 Identities=14% Similarity=0.130 Sum_probs=141.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+. ...++.++.+|++++ ++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~~~~------~~ 68 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREGA---TVAIADIDIERARQAAAE--------IGPAAYAVQMDVTRQ------DS 68 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH--------HCTTEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHH--------hCCCceEEEeeCCCH------HH
Confidence 5689999999999999999999999886 45555432 22222222 234678999999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+... ++-.++|++||...+..
T Consensus 69 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 148 (259)
T 4e6p_A 69 IDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRG 148 (259)
T ss_dssp HHHHHHHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccC
Confidence 776665 89999999997542 3567889999999999999988642 11458999999865432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+... ..+++.++.+.. ..|+++.+++||.|.++
T Consensus 149 ~~----------------------------~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~vn~v~PG~v~t~ 191 (259)
T 4e6p_A 149 EA----------------------------LVAIYCATKAAV--------ISLTQSAGLDLI-KHRINVNAIAPGVVDGE 191 (259)
T ss_dssp CT----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECCBCST
T ss_pred CC----------------------------CChHHHHHHHHH--------HHHHHHHHHHhh-hcCCEEEEEEECCCccc
Confidence 11 111121111111 123333433332 24899999999999875
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
........... .... ..+.......+......+..++|+|++++.++..... .-.+++|++.++
T Consensus 192 ~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~--~itG~~i~vdgG 255 (259)
T 4e6p_A 192 HWDGVDALFAR------YENR-PRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESD--YIVSQTYNVDGG 255 (259)
T ss_dssp THHHHHHHHHH------HHTC-CTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGT--TCCSCEEEESTT
T ss_pred hhhhhhhhhhh------hccC-ChHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccC--CCCCCEEEECcC
Confidence 33211000000 0000 0000000001111234688999999998887654321 234689999887
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.6e-17 Score=151.57 Aligned_cols=184 Identities=10% Similarity=0.094 Sum_probs=126.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|+||||||+||++++++|++. +|+++++.. .+.+.+.. .. .++.+|++++ +.++.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~-----~V~~~~r~~~~~~~~~~~~---------~~-~~~~~D~~~~------~~~~~ 59 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH-----DLLLSGRRAGALAELAREV---------GA-RALPADLADE------LEAKA 59 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS-----EEEEECSCHHHHHHHHHHH---------TC-EECCCCTTSH------HHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC-----CEEEEECCHHHHHHHHHhc---------cC-cEEEeeCCCH------HHHHH
Confidence 57999999999999999999975 667665432 22222211 11 7789999987 77877
Q ss_pred Hhc---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccC
Q 042694 189 IAK---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFC 258 (554)
Q Consensus 189 l~~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~ 258 (554)
+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+++ .+..+||++||..++....
T Consensus 60 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~iv~~sS~~~~~~~~--------- 129 (207)
T 2yut_A 60 LLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARF-QKGARAVFFGAYPRYVQVP--------- 129 (207)
T ss_dssp HHHHHCSEEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCE-EEEEEEEEECCCHHHHSST---------
T ss_pred HHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHh-cCCcEEEEEcChhhccCCC---------
Confidence 777 89999999997543 246788999999999999999965 3678999999987654311
Q ss_pred CCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceeeecccCCcccc
Q 042694 259 MGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIESTCKEPFSGW 335 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~g~~~~p~~g~ 335 (554)
.. . .|..+|...+.+.+... ...|++++++|||.++++.. .+
T Consensus 130 -------------------~~------~------~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~---~~- 174 (207)
T 2yut_A 130 -------------------GF------A------AYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLW---AP- 174 (207)
T ss_dssp -------------------TB------H------HHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGG---GG-
T ss_pred -------------------Cc------c------hHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCc---cc-
Confidence 11 1 12222333344433322 23589999999999977431 00
Q ss_pred ccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHh
Q 042694 336 MEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQH 384 (554)
Q Consensus 336 ~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~ 384 (554)
. .....++++++|+|++++.++...
T Consensus 175 ---------------~---------~~~~~~~~~~~dva~~~~~~~~~~ 199 (207)
T 2yut_A 175 ---------------L---------GGPPKGALSPEEAARKVLEGLFRE 199 (207)
T ss_dssp ---------------G---------TSCCTTCBCHHHHHHHHHHHHC--
T ss_pred ---------------c---------CCCCCCCCCHHHHHHHHHHHHhCC
Confidence 0 011257899999999999887653
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-15 Score=144.71 Aligned_cols=214 Identities=12% Similarity=0.073 Sum_probs=136.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.. ..++.++.+|++++ ++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~------~~ 67 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGA---KVVFGDILDEEGKAMAAEL--------ADAARYVHLDVTQP------AQ 67 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHT--------GGGEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHh--------hcCceEEEecCCCH------HH
Confidence 4688999999999999999999999886 45555432 122222221 23578899999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++.+.+... .+..++|++||...+...
T Consensus 68 v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 147 (260)
T 1nff_A 68 WKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT 147 (260)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCC
Confidence 777665 89999999997543 3467889999999997666655321 256799999998664421
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. ....|...+... ..+++.++.+.. ..|+++.++|||.|.++.
T Consensus 148 ~----------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~ 190 (260)
T 1nff_A 148 V----------------------------ACHGYTATKFAV--------RGLTKSTALELG-PSGIRVNSIHPGLVKTPM 190 (260)
T ss_dssp T----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECCBCSGG
T ss_pred C----------------------------CchhHHHHHHHH--------HHHHHHHHHHhC-ccCcEEEEEEeCCCCCCc
Confidence 1 011111111111 112333333322 248999999999998754
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. +... . +. .. + ...+..++|+|++++.++..... ...+++|++.++
T Consensus 191 ~~----~~~~-----~-~~-----~~------~--~~~~~~~~dvA~~v~~l~s~~~~--~~~G~~~~v~gG 237 (260)
T 1nff_A 191 TD----WVPE-----D-IF-----QT------A--LGRAAEPVEVSNLVVYLASDESS--YSTGAEFVVDGG 237 (260)
T ss_dssp GT----TSCT-----T-CS-----CC------S--SSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cc----cchh-----h-HH-----hC------c--cCCCCCHHHHHHHHHHHhCcccc--CCcCCEEEECCC
Confidence 32 1000 0 00 00 0 12467889999999888754321 224689999887
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-16 Score=151.11 Aligned_cols=231 Identities=11% Similarity=0.069 Sum_probs=141.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-h--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-E--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|+|+||||||+||++++++|++.|. +|+++.+ . ..+.+.+.... ...++.++.+|++++ +
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~------~ 84 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRGA---SVVVNYGSSSKAAEEVVAELKK-----LGAQGVAIQADISKP------S 84 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTSH------H
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCchHHHHHHHHHHHh-----cCCcEEEEEecCCCH------H
Confidence 4688999999999999999999999876 4555433 1 12222222110 235788999999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceec-ccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVN-GQR 248 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~-~~~ 248 (554)
.++.+.+ ++|+|||+|+.... .+.++..+++|+.|+.++++.+... .+-.++|++||..++ ...
T Consensus 85 ~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~ 164 (274)
T 1ja9_A 85 EVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI 164 (274)
T ss_dssp HHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCCC
Confidence 7766665 89999999997542 2457789999999999999998763 111699999998765 321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~ 325 (554)
. .. . .|..+|...+.+.+.+. ...|+++.++|||.|.
T Consensus 165 ~----------------------------~~------~------~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~ 204 (274)
T 1ja9_A 165 P----------------------------NH------A------LYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVK 204 (274)
T ss_dssp C----------------------------SC------H------HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBS
T ss_pred C----------------------------CC------c------hHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccc
Confidence 1 00 1 12223333334333222 1248999999999997
Q ss_pred ecccCCc-cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 326 STCKEPF-SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 326 g~~~~p~-~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
++..... ...... ...... .......+ .+.....++++++|+|++++.++..... ...+++|++.++
T Consensus 205 t~~~~~~~~~~~~~--~~~~~~---~~~~~~~~-~~~~~~~~~~~~~dva~~i~~l~~~~~~--~~~G~~~~v~gG 272 (274)
T 1ja9_A 205 TDMFDENSWHYAPG--GYKGMP---QEKIDEGL-ANMNPLKRIGYPADIGRAVSALCQEESE--WINGQVIKLTGG 272 (274)
T ss_dssp SHHHHHHGGGTSTT--CCTTCC---HHHHHHHH-HHTSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred ccchhccccccccc--ccccCc---hHHHHHHH-HhcCCCCCccCHHHHHHHHHHHhCcccc--cccCcEEEecCC
Confidence 6532110 000000 000000 00000000 0111224688999999999988764321 123579999876
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=148.79 Aligned_cols=220 Identities=13% Similarity=0.138 Sum_probs=138.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|+|+||||||+||++++++|++.|. +|+++++ ...+.+.+.... ...++.++.+|++++ +
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~ 70 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGA---KVGLHGRKAPANIDETIASMRA-----DGGDAAFFAADLATS------E 70 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCCTTHHHHHHHHHH-----TTCEEEEEECCTTSH------H
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEECCCchhhHHHHHHHHHh-----cCCceEEEECCCCCH------H
Confidence 4678999999999999999999999876 4555432 222333222211 134788999999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCC-CC---c----hhhHHHHHHHhchHHHHHHHHHHHc--------CCCceEEEEee
Q 042694 185 LADVIAK-------EVDVIVNSAAN-TT---F----DERYDIAIDINTRGPCRLMEFAKQC--------NKLKLFVQVST 241 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~-v~---~----~~~~~~~~~~Nv~gt~~ll~la~~~--------~~~k~~v~vST 241 (554)
+.+.+.+ ++|+|||+||. .. + .+.++..+++|+.|+.++++.+... +...++|++||
T Consensus 71 ~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS 150 (258)
T 3afn_B 71 ACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGS 150 (258)
T ss_dssp HHHHHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecc
Confidence 7777665 89999999996 32 1 2457788999999999999877531 11268999999
Q ss_pred ceecc-cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEE
Q 042694 242 AYVNG-QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVV 317 (554)
Q Consensus 242 ~~v~~-~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~ 317 (554)
.+.+. .. +.. .. |..+|...+.+.+... ...|+++.
T Consensus 151 ~~~~~~~~----------------------------~~~------~~------Y~~sK~a~~~~~~~~~~e~~~~gi~v~ 190 (258)
T 3afn_B 151 IAGHTGGG----------------------------PGA------GL------YGAAKAFLHNVHKNWVDFHTKDGVRFN 190 (258)
T ss_dssp THHHHCCC----------------------------TTC------HH------HHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred hhhccCCC----------------------------CCc------hH------HHHHHHHHHHHHHHHHHhhcccCeEEE
Confidence 76543 11 111 11 2222333333333221 13489999
Q ss_pred EEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEe
Q 042694 318 IIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQI 397 (554)
Q Consensus 318 I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~ 397 (554)
++|||.|.++...... ......+..+ .....+++++|+|++++.++..... ....+++|++
T Consensus 191 ~v~Pg~v~t~~~~~~~---------~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~-~~~~G~~~~v 251 (258)
T 3afn_B 191 IVSPGTVDTAFHADKT---------QDVRDRISNG---------IPMGRFGTAEEMAPAFLFFASHLAS-GYITGQVLDI 251 (258)
T ss_dssp EEEECSBSSGGGTTCC---------HHHHHHHHTT---------CTTCSCBCGGGTHHHHHHHHCHHHH-TTCCSEEEEE
T ss_pred EEeCCCcccccccccC---------HHHHHHHhcc---------CCCCcCCCHHHHHHHHHHHhCcchh-ccccCCEEeE
Confidence 9999999875432210 0000000000 1123688999999999988764321 0123589999
Q ss_pred eCC
Q 042694 398 ASS 400 (554)
Q Consensus 398 ~~~ 400 (554)
.++
T Consensus 252 ~gg 254 (258)
T 3afn_B 252 NGG 254 (258)
T ss_dssp STT
T ss_pred CCC
Confidence 876
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.6e-16 Score=152.13 Aligned_cols=248 Identities=13% Similarity=0.130 Sum_probs=154.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|+++++. ..+.+.+..... .....++.++.+|++++ ++
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~~Dv~~~------~~ 77 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA---SVMIVGRNPDKLAGAVQELEAL--GANGGAIRYEPTDITNE------DE 77 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTT--CCSSCEEEEEECCTTSH------HH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCH------HH
Confidence 5789999999999999999999999886 45555432 222222222110 00123788999999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ ++|++||+||... + .+.++..+++|+.|+.++++.+... .+-.++|++||...+..
T Consensus 78 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 157 (281)
T 3svt_A 78 TARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNT 157 (281)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCC
Confidence 666654 6899999999622 1 2467889999999999999988652 22348999999866433
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
. +....|...+.... .+++.++.+.. ..|+.+..++||.|.++
T Consensus 158 ~----------------------------~~~~~Y~asK~a~~--------~l~~~la~e~~-~~gi~vn~v~PG~v~t~ 200 (281)
T 3svt_A 158 H----------------------------RWFGAYGVTKSAVD--------HLMQLAADELG-ASWVRVNSIRPGLIRTD 200 (281)
T ss_dssp C----------------------------TTCTHHHHHHHHHH--------HHHHHHHHHHG-GGTEEEEEEEECSBCSG
T ss_pred C----------------------------CCChhHHHHHHHHH--------HHHHHHHHHhh-hcCeEEEEEEeCcCcCc
Confidence 1 11111222221111 23334433332 34799999999999764
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCccc-
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLV- 406 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it- 406 (554)
.... +... .........+ . -...+..++|+|++++.++..... .-.++++++.++ ..++
T Consensus 201 ~~~~---~~~~----~~~~~~~~~~-~--------p~~r~~~~~dva~~~~~l~s~~~~--~itG~~~~vdgG--~~~~~ 260 (281)
T 3svt_A 201 LVAA---ITES----AELSSDYAMC-T--------PLPRQGEVEDVANMAMFLLSDAAS--FVTGQVINVDGG--QMLRR 260 (281)
T ss_dssp GGHH---HHTC----HHHHHHHHHH-C--------SSSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT--GGGSC
T ss_pred chhh---cccC----HHHHHHHHhc-C--------CCCCCCCHHHHHHHHHHHhCcccC--CCCCCEEEeCCC--hhccc
Confidence 3211 1000 0000000000 0 012456789999999888765332 224689999887 4555
Q ss_pred HHHHHHHHHhHhccCCC
Q 042694 407 FQDLARLLHEHYSASPC 423 (554)
Q Consensus 407 ~~e~~~~~~~~~~~~p~ 423 (554)
..++.+.+.+.++..+.
T Consensus 261 ~~~~~~~~~~~~~~~~~ 277 (281)
T 3svt_A 261 GPDFSAMLEPVFGRDAL 277 (281)
T ss_dssp CCCCHHHHHHHHCTTGG
T ss_pred CCcchhccccccCCccc
Confidence 66788888888876544
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=147.68 Aligned_cols=221 Identities=14% Similarity=0.087 Sum_probs=140.1
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.+|+++||||+|+||++++++|++.|.+ |++.+. +..+.+.+.... ...++.++.+|++++ ++
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~---V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~------~~ 68 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYN---VAVNYAGSKEKAEAVVEEIKA-----KGVDSFAIQANVADA------DE 68 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCHHHHHHHHHHHHH-----TTSCEEEEECCTTCH------HH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 5789999999999999999999998864 444332 222233222211 235788999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||.......
T Consensus 69 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 148 (246)
T 3osu_A 69 VKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGN 148 (246)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC
Confidence 776665 79999999997542 3567889999999999999998321 356799999997654321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. ....|...+... ..+++.++.+... .|+++..++||.|.++.
T Consensus 149 ~----------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~~-~gi~vn~v~PG~v~t~~ 191 (246)
T 3osu_A 149 P----------------------------GQANYVATKAGV--------IGLTKSAARELAS-RGITVNAVAPGFIVSDM 191 (246)
T ss_dssp T----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBGGGC
T ss_pred C----------------------------CChHHHHHHHHH--------HHHHHHHHHHhcc-cCeEEEEEEECCCcCCc
Confidence 1 111121111111 1234444443333 48999999999997754
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....... ....... ..-...+...+|++++++.++..... .-.++++++.++
T Consensus 192 ~~~~~~~---------~~~~~~~---------~~p~~r~~~~~dva~~v~~l~s~~~~--~itG~~i~vdgG 243 (246)
T 3osu_A 192 TDALSDE---------LKEQMLT---------QIPLARFGQDTDIANTVAFLASDKAK--YITGQTIHVNGG 243 (246)
T ss_dssp CSCSCHH---------HHHHHHT---------TCTTCSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred ccccCHH---------HHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCcccc--CCCCCEEEeCCC
Confidence 3221110 0000000 11113466789999999887764332 234689999876
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-15 Score=147.49 Aligned_cols=224 Identities=13% Similarity=0.060 Sum_probs=138.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-h--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-E--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++++|+||||||+||++++++|++.+. +|+++.+ . ..+.+.+.... ...++.++.+|++++ +
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~------~ 70 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKA---KVVVNYRSKEDEANSVLEEIKK-----VGGEAIAVKGDVTVE------S 70 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHHH-----TTCEEEEEECCTTSH------H
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEcCCChHHHHHHHHHHHh-----cCCceEEEECCCCCH------H
Confidence 4678999999999999999999999876 4555543 2 12222222110 234788999999987 6
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeeceecc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAYVNG 246 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~v~~ 246 (554)
+.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+ ..++|++||.....
T Consensus 71 ~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~ 150 (261)
T 1gee_A 71 DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI 150 (261)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC
Confidence 6666655 79999999997543 2467889999999999998887642 12 56999999975432
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. +....|...+... ..+++.++.... ..|+++.++|||.|.+
T Consensus 151 ~~----------------------------~~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t 193 (261)
T 1gee_A 151 PW----------------------------PLFVHYAASKGGM--------KLMTETLALEYA-PKGIRVNNIGPGAINT 193 (261)
T ss_dssp CC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEECSBCS
T ss_pred CC----------------------------CCccHHHHHHHHH--------HHHHHHHHHHhc-ccCeEEEEEeeCCcCC
Confidence 11 1111111111111 023333333332 2489999999999987
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+.... +... ......+.. .. + ...+++++|+|++++.++..... ...++++++.++
T Consensus 194 ~~~~~---~~~~----~~~~~~~~~-~~------~--~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gg 249 (261)
T 1gee_A 194 PINAE---KFAD----PEQRADVES-MI------P--MGYIGEPEEIAAVAAWLASSEAS--YVTGITLFADGG 249 (261)
T ss_dssp GGGHH---HHHS----HHHHHHHHT-TC------T--TSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred chhhh---cccC----hhHHHHHHh-cC------C--CCCCcCHHHHHHHHHHHhCcccc--CCCCcEEEEcCC
Confidence 54311 1000 000000000 00 1 13478899999999888754321 224678998877
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-15 Score=148.94 Aligned_cols=229 Identities=12% Similarity=0.198 Sum_probs=141.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++++|+||||||+||++++++|++.|. +|+++++. ..+.+.+............++.++.+|++++ +.
T Consensus 16 l~~k~vlVTGasggIG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~------~~ 86 (303)
T 1yxm_A 16 LQGQVAIVTGGATGIGKAIVKELLELGS---NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNE------EE 86 (303)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCH------HH
Confidence 5789999999999999999999999886 45555432 2222222211000001235789999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
++.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||....+.
T Consensus 87 v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~- 165 (303)
T 1yxm_A 87 VNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGF- 165 (303)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTCC-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeecccCC-
Confidence 666654 59999999996432 2467788999999999999998651 13468999999862111
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
+....+...+... +.+++.++++... .|+++.++|||.|+++.
T Consensus 166 ----------------------------~~~~~Y~~sK~a~--------~~~~~~la~e~~~-~gi~v~~v~Pg~v~t~~ 208 (303)
T 1yxm_A 166 ----------------------------PLAVHSGAARAGV--------YNLTKSLALEWAC-SGIRINCVAPGVIYSQT 208 (303)
T ss_dssp ----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHTGG-GTEEEEEEEECSBCCTG
T ss_pred ----------------------------CcchhhHHHHHHH--------HHHHHHHHHHhcc-cCeEEEEEecCCcccch
Confidence 1111121111111 2345555555443 48999999999998863
Q ss_pred c-CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 K-EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~-~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
. .....+... .. ....... + ...++.++|+|++++.++..... ...++++++.++
T Consensus 209 ~~~~~~~~~~~------~~----~~~~~~~---p--~~~~~~~~dvA~~i~~l~~~~~~--~~~G~~~~v~gG 264 (303)
T 1yxm_A 209 AVENYGSWGQS------FF----EGSFQKI---P--AKRIGVPEEVSSVVCFLLSPAAS--FITGQSVDVDGG 264 (303)
T ss_dssp GGTTSGGGGGG------GG----TTGGGGS---T--TSSCBCTHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhhhccccchH------HH----HHHHhcC---c--ccCCCCHHHHHHHHHHHhCcccc--cCCCcEEEECCC
Confidence 1 111111110 00 0000000 1 12477899999999988754321 234689999887
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-15 Score=143.74 Aligned_cols=196 Identities=9% Similarity=0.106 Sum_probs=130.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCC---c-cEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPD---V-GKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~---V-~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+|+|+||||||+||++++++|++.+.. . .+|+++++. ..+.+.+.... ...++.++.+|++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------ 70 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA-----EGALTDTITADISDM------ 70 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT-----TTCEEEEEECCTTSH------
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHc-----cCCeeeEEEecCCCH------
Confidence 688999999999999999999998861 0 045555432 22333222211 235788999999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
+..+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||...+.
T Consensus 71 ~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 150 (244)
T 2bd0_A 71 ADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK 150 (244)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC
Confidence 66666654 79999999997543 3567889999999999999988531 2567999999987654
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccce
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSV 323 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~ 323 (554)
... .. .. |..+|...+.+.+... ...|+++.++|||.
T Consensus 151 ~~~----------------------------~~------~~------Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~ 190 (244)
T 2bd0_A 151 AFR----------------------------HS------SI------YCMSKFGQRGLVETMRLYARKCNVRITDVQPGA 190 (244)
T ss_dssp CCT----------------------------TC------HH------HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECC
T ss_pred CCC----------------------------CC------ch------hHHHHHHHHHHHHHHHHHhhccCcEEEEEECCC
Confidence 211 11 11 2222333333332221 23589999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHH
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQ 383 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~ 383 (554)
|.++.....+. . . ...+++++|+|++++.++..
T Consensus 191 v~t~~~~~~~~---------~----------------~--~~~~~~~~dva~~~~~l~~~ 223 (244)
T 2bd0_A 191 VYTPMWGKVDD---------E----------------M--QALMMMPEDIAAPVVQAYLQ 223 (244)
T ss_dssp BCSTTTCCCCS---------T----------------T--GGGSBCHHHHHHHHHHHHTS
T ss_pred ccchhhhhccc---------c----------------c--cccCCCHHHHHHHHHHHHhC
Confidence 98754321100 0 0 12578899999999988764
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-15 Score=145.47 Aligned_cols=219 Identities=13% Similarity=0.116 Sum_probs=136.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHc-CCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTY-GKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~-~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+|+|+||||||+||++++++|++.+. +|+++++. ..+.+.+.. .. ...++.++.+|++++ ++.
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~ 67 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD---RVAALDLSAETLEETARTHWHA-----YADKVLRVRADVADE------GDV 67 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHSTT-----TGGGEEEEECCTTCH------HHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHh-----cCCcEEEEEecCCCH------HHH
Confidence 67899999999999999999999875 45555432 222332222 11 134788999999987 777
Q ss_pred HHHhc-------CccEEEEcCCCCCc----------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF----------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
+.+.+ ++|+|||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||...+.
T Consensus 68 ~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 147 (250)
T 2cfc_A 68 NAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLV 147 (250)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc
Confidence 66665 79999999997542 2467889999999998777766431 2568999999986643
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccce
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSV 323 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~ 323 (554)
... .. .. |..+|...+.+.+... ...|+++.++|||.
T Consensus 148 ~~~----------------------------~~------~~------Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~ 187 (250)
T 2cfc_A 148 AFP----------------------------GR------SA------YTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGM 187 (250)
T ss_dssp CCT----------------------------TC------HH------HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred CCC----------------------------Cc------hh------HHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCc
Confidence 211 01 11 2222333333333222 12489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|+++.... .... .........+ . + ...+...+|++++++.++..... ...++++++.++
T Consensus 188 v~t~~~~~---~~~~----~~~~~~~~~~-~------~--~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gG 246 (250)
T 2cfc_A 188 IETPMTQW---RLDQ----PELRDQVLAR-I------P--QKEIGTAAQVADAVMFLAGEDAT--YVNGAALVMDGA 246 (250)
T ss_dssp BCSTTTHH---HHTS----HHHHHHHHTT-C------T--TCSCBCHHHHHHHHHHHHSTTCT--TCCSCEEEESTT
T ss_pred CccCcccc---ccCC----HHHHHHHHhc-C------C--CCCCcCHHHHHHHHHHHcCchhh--cccCCEEEECCc
Confidence 98854321 0100 0000000000 0 1 12467899999999888754321 223678988776
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=148.19 Aligned_cols=218 Identities=14% Similarity=0.118 Sum_probs=129.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++++|+||||||+||++++++|++.|. +|+++ ++ ...+.+.+.... ...++.++.+|++++ +
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~---~V~~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~ 68 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGA---NIVLNGSPASTSLDATAEEFKA-----AGINVVVAKGDVKNP------E 68 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECTTCSHHHHHHHHHHH-----TTCCEEEEESCTTSH------H
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCcCHHHHHHHHHHHHh-----cCCcEEEEECCCCCH------H
Confidence 3578999999999999999999999876 45555 32 222222222110 234788999999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
..+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||......
T Consensus 69 ~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~ 148 (247)
T 2hq1_A 69 DVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIG 148 (247)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccC
Confidence 7666655 79999999997542 2356788999999998888887642 25679999999744221
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHH----HHHHhhhhhcCCCcEEEEccce
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVA----QKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~a----e~l~e~~~~~~glp~~I~Rp~~ 323 (554)
.. .. .. |..+|... +.++.+.. ..++++.++|||.
T Consensus 149 ~~----------------------------~~------~~------Y~~sK~a~~~~~~~la~e~~-~~gi~v~~v~Pg~ 187 (247)
T 2hq1_A 149 NA----------------------------GQ------AN------YAASKAGLIGFTKSIAKEFA-AKGIYCNAVAPGI 187 (247)
T ss_dssp -------------------------------C------HH------HHHHHHHHHHHHHHHHHHHG-GGTEEEEEEEECS
T ss_pred CC----------------------------CC------cH------hHHHHHHHHHHHHHHHHHHH-HcCcEEEEEEEEE
Confidence 10 00 11 22223323 33333222 2489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+.++....++. ........ ......+++++|++++++.++..... ...+++|++.++
T Consensus 188 v~t~~~~~~~~---------~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gG 244 (247)
T 2hq1_A 188 IKTDMTDVLPD---------KVKEMYLN---------NIPLKRFGTPEEVANVVGFLASDDSN--YITGQVINIDGG 244 (247)
T ss_dssp BCCHHHHTSCH---------HHHHHHHT---------TSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred Eeccchhhcch---------HHHHHHHh---------hCCCCCCCCHHHHHHHHHHHcCcccc--cccCcEEEeCCC
Confidence 86542211110 00000000 01113578899999999887754321 123579999876
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-15 Score=144.47 Aligned_cols=218 Identities=12% Similarity=0.072 Sum_probs=137.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.+. +|+++++ ...+.+.+.. ..++.++.+|++++ ++
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~------~~ 72 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQGA---SAVLLDLPNSGGEAQAKKL--------GNNCVFAPADVTSE------KD 72 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTSSHHHHHHHH--------CTTEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCcHhHHHHHHHh--------CCceEEEEcCCCCH------HH
Confidence 4689999999999999999999999876 4555543 2223332221 34788999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------------hhhHHHHHHHhchHHHHHHHHHHHc-C--------CCceE
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------------DERYDIAIDINTRGPCRLMEFAKQC-N--------KLKLF 236 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------------~~~~~~~~~~Nv~gt~~ll~la~~~-~--------~~k~~ 236 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++++... . +..++
T Consensus 73 v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 152 (265)
T 2o23_A 73 VQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVI 152 (265)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEE
T ss_pred HHHHHHHHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 777665 89999999997532 3467889999999999999998753 1 45789
Q ss_pred EEEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcE
Q 042694 237 VQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPV 316 (554)
Q Consensus 237 v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~ 316 (554)
|++||...+.... ....|...+..+ ..+++.++.+.. ..|+++
T Consensus 153 v~isS~~~~~~~~----------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v 195 (265)
T 2o23_A 153 INTASVAAFEGQV----------------------------GQAAYSASKGGI--------VGMTLPIARDLA-PIGIRV 195 (265)
T ss_dssp EEECCTHHHHCCT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEE
T ss_pred EEeCChhhcCCCC----------------------------CCchhHHHHHHH--------HHHHHHHHHHHh-hcCcEE
Confidence 9999986643211 011111111111 123344443332 248999
Q ss_pred EEEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEE
Q 042694 317 VIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQ 396 (554)
Q Consensus 317 ~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn 396 (554)
.+++||.|.++.....+. . ...... ...+ ....++.++++|++++.++.... ..+++++
T Consensus 196 ~~v~Pg~v~t~~~~~~~~---~------~~~~~~-~~~~-------~~~~~~~~~dva~~~~~l~~~~~----~~G~~i~ 254 (265)
T 2o23_A 196 MTIAPGLFGTPLLTSLPE---K------VCNFLA-SQVP-------FPSRLGDPAEYAHLVQAIIENPF----LNGEVIR 254 (265)
T ss_dssp EEEEECCBCCC-------------------CHHH-HTCS-------SSCSCBCHHHHHHHHHHHHHCTT----CCSCEEE
T ss_pred EEEEeccccCccccccCH---H------HHHHHH-HcCC-------CcCCCCCHHHHHHHHHHHhhcCc----cCceEEE
Confidence 999999986643221110 0 000000 0010 00236788999999988875322 2357888
Q ss_pred eeCC
Q 042694 397 IASS 400 (554)
Q Consensus 397 ~~~~ 400 (554)
+.++
T Consensus 255 vdgG 258 (265)
T 2o23_A 255 LDGA 258 (265)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8776
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=149.72 Aligned_cols=233 Identities=12% Similarity=0.112 Sum_probs=140.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+... .....++.++.+|++++ ++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~D~~~~------~~ 71 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGA---HIVLVARQVDRLHEAARSLK----EKFGVRVLEVAVDVATP------EG 71 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH----HHHCCCEEEEECCTTSH------HH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHHHH----HhcCCceEEEEcCCCCH------HH
Confidence 4678999999999999999999999876 45555432 1222222111 00134788999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||...+...
T Consensus 72 ~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 151 (263)
T 3ai3_A 72 VDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPL 151 (263)
T ss_dssp HHHHHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC
Confidence 766665 79999999997532 3567889999999999999887531 256799999998765432
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. ....|...+... ..+++.++.+.. ..|+++.++|||.|.++.
T Consensus 152 ~----------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~ 194 (263)
T 3ai3_A 152 W----------------------------YEPIYNVTKAAL--------MMFSKTLATEVI-KDNIRVNCINPGLILTPD 194 (263)
T ss_dssp T----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECCBCCHH
T ss_pred C----------------------------CcchHHHHHHHH--------HHHHHHHHHHhh-hcCcEEEEEecCcccCcc
Confidence 1 011111111111 123333433332 248999999999998754
Q ss_pred cCCc-cccccCCCC-ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPF-SGWMEGNRM-MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~-~g~~~~~~~-~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... +.+...... ..........+.. + ...++.++|+|++++.++.... ....+++|++.++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p--~~~~~~~~dvA~~~~~l~s~~~--~~~~G~~~~vdgG 258 (263)
T 3ai3_A 195 WIKTAKELTKDNGGDWKGYLQSVADEHA------P--IKRFASPEELANFFVFLCSERA--TYSVGSAYFVDGG 258 (263)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHHHHHC------T--TCSCBCHHHHHHHHHHHTSTTC--TTCCSCEEEESTT
T ss_pred hhhhhHhhhcccCCcHHHHHHHHHhcCC------C--CCCCcCHHHHHHHHHHHcCccc--cCCCCcEEEECCC
Confidence 3211 000000000 0000000000000 1 1357889999999988775422 1124689999887
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=146.07 Aligned_cols=220 Identities=12% Similarity=0.093 Sum_probs=136.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcE-EEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKL-VPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv-~~v~GDl~~~~lGLs~~ 184 (554)
.++++|+||||||+||++++++|++.|. +|+++++.. .+.+.+.. ..++ ..+.+|++++ +
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~~D~~~~------~ 71 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGA---RLILIDREAAALDRAAQEL--------GAAVAARIVADVTDA------E 71 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH--------GGGEEEEEECCTTCH------H
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHh--------cccceeEEEEecCCH------H
Confidence 4678999999999999999999999875 466654421 22222221 2356 7899999987 6
Q ss_pred HHHHHh------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 185 LADVIA------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 185 ~~~~l~------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
..+.+. .++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||...+...
T Consensus 72 ~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~ 151 (254)
T 2wsb_A 72 AMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN 151 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC
Confidence 666655 479999999997543 3467888999999987777765321 257899999998664431
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccceee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V~ 325 (554)
.+ .+.. . |..+|...+.+++... ...|+++.++|||.|+
T Consensus 152 ~~--------------------------~~~~------~------Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~ 193 (254)
T 2wsb_A 152 RP--------------------------QFAS------S------YMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVA 193 (254)
T ss_dssp SS--------------------------SCBH------H------HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC
T ss_pred CC--------------------------Ccch------H------HHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccC
Confidence 10 0001 1 2222333333333222 1248999999999998
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
++....... . ...... ... ......+++++|+|++++.++..... ...++++++.++
T Consensus 194 t~~~~~~~~---~----~~~~~~----~~~-----~~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gG 250 (254)
T 2wsb_A 194 TEMTLKMRE---R----PELFET----WLD-----MTPMGRCGEPSEIAAAALFLASPAAS--YVTGAILAVDGG 250 (254)
T ss_dssp SHHHHHHHT---C----HHHHHH----HHH-----TSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred chhhhcccc---C----hHHHHH----HHh-----cCCCCCCCCHHHHHHHHHHHhCcccc--cccCCEEEECCC
Confidence 754321110 0 000000 000 00013578899999999988754321 224678998776
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=147.66 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=131.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cch--hHHHHHHHcCCchhhhccCcEEE-EEccCCCCCCCCCHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NAE--LFKCLKQTYGKSYQAFMLSKLVP-AVGNVCENNLGLEEDL 185 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~~--~~~~l~~~~~~~~~~~~~~kv~~-v~GDl~~~~lGLs~~~ 185 (554)
+|+|+||||||+||++++++|++.|. +|+++ ++. ..+.+.+.... ...++.. +.+|++++ +.
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~---~v~~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~------~~ 66 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGF---ALAIHYGQNREKAEEVAEEARR-----RGSPLVAVLGANLLEA------EA 66 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESSCHHHHHHHHHHHHH-----TTCSCEEEEECCTTSH------HH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCHHHHHHHHHHHHh-----cCCceEEEEeccCCCH------HH
Confidence 47899999999999999999999875 45554 322 12222221110 1235566 89999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHH----HHHHcCCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLME----FAKQCNKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~----la~~~~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++ .+++ .+..++|++||......
T Consensus 67 ~~~~~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-~~~~~iv~~sS~~~~~~ 145 (245)
T 2ph3_A 67 ATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMK-ARFGRIVNITSVVGILG 145 (245)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEECCTHHHHC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHh-cCCCEEEEEeChhhccC
Confidence 665543 79999999997542 34678899999999555554 4444 35789999999754332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+... ..+++.++.+.. ..|++++++|||.|.++
T Consensus 146 ~~----------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~ 188 (245)
T 2ph3_A 146 NP----------------------------GQANYVASKAGL--------IGFTRAVAKEYA-QRGITVNAVAPGFIETE 188 (245)
T ss_dssp CS----------------------------SBHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBCCH
T ss_pred CC----------------------------CCcchHHHHHHH--------HHHHHHHHHHHH-HcCeEEEEEEEEeecCc
Confidence 11 000111111111 123334433332 24899999999999775
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.....+. ........ .. + ...+++++|+|++++.++..... ...+++|++.++
T Consensus 189 ~~~~~~~---------~~~~~~~~-~~------~--~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gg 241 (245)
T 2ph3_A 189 MTERLPQ---------EVKEAYLK-QI------P--AGRFGRPEEVAEAVAFLVSEKAG--YITGQTLCVDGG 241 (245)
T ss_dssp HHHTSCH---------HHHHHHHH-TC------T--TCSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred chhhcCH---------HHHHHHHh-cC------C--CCCCcCHHHHHHHHHHHhCcccc--cccCCEEEECCC
Confidence 4321110 00000000 00 0 13578999999999887754321 123689999876
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-15 Score=144.69 Aligned_cols=219 Identities=12% Similarity=0.088 Sum_probs=138.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ..++.++.+|++++ ++
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~D~~~~------~~ 68 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGA---KVMITGRHSDVGEKAAKSVGT------PDQIQFFQHDSSDE------DG 68 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCH------HH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhhc------cCceEEEECCCCCH------HH
Confidence 4678999999999999999999999876 45555432 22222222211 15789999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCC-ceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKL-KLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~-k~~v~vST~~v~~~ 247 (554)
++.+.+ .+|+|||+||.... .+.++..+++|+.|+..+.+.+.. + .+. .++|++||...+..
T Consensus 69 ~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~ 148 (251)
T 1zk4_A 69 WTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG 148 (251)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccC
Confidence 666654 59999999997532 346788999999998887776643 1 244 79999999866443
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh-----hcCCCcEEEEccc
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL-----ERGDIPVVIIRPS 322 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~-----~~~glp~~I~Rp~ 322 (554)
.. .. .. |..+|...+.+.+... ...|+++.++|||
T Consensus 149 ~~----------------------------~~------~~------Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg 188 (251)
T 1zk4_A 149 DP----------------------------SL------GA------YNASKGAVRIMSKSAALDCALKDYDVRVNTVHPG 188 (251)
T ss_dssp CT----------------------------TC------HH------HHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEEC
T ss_pred CC----------------------------CC------cc------chHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeC
Confidence 11 01 11 2222333333332211 1468999999999
Q ss_pred eeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 323 VIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 323 ~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.|.++.....+. .... ... ........+++++|++++++.++..... ...++++++.++
T Consensus 189 ~v~t~~~~~~~~---------~~~~----~~~----~~~~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gG 247 (251)
T 1zk4_A 189 YIKTPLVDDLPG---------AEEA----MSQ----RTKTPMGHIGEPNDIAYICVYLASNESK--FATGSEFVVDGG 247 (251)
T ss_dssp CBCCHHHHTSTT---------HHHH----HTS----TTTCTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cCcchhhhhcCc---------hhhh----HHH----hhcCCCCCCcCHHHHHHHHHHHcCcccc--cccCcEEEECCC
Confidence 998754322111 0000 000 0000113478999999999988764321 123678998876
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-15 Score=145.47 Aligned_cols=223 Identities=14% Similarity=0.082 Sum_probs=135.3
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
..++++|+||||+|+||++++++|++.|.+ |++. ++ +..+.+.+.... ...++.++.+|++++
T Consensus 23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~---V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------ 88 (272)
T 4e3z_A 23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWR---VGVNYAANREAADAVVAAITE-----SGGEAVAIPGDVGNA------ 88 (272)
T ss_dssp -CCSCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSCHHHHHHHHHHHHH-----TTCEEEEEECCTTCH------
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCCChhHHHHHHHHHHh-----cCCcEEEEEcCCCCH------
Confidence 356789999999999999999999998864 4433 22 222333222211 235789999999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc-C-----CCceEEEEeec
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC-N-----KLKLFVQVSTA 242 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~-~-----~~k~~v~vST~ 242 (554)
++.+.+.+ .+|+|||+||.... .+.++..+++|+.|+..+++.+... . +..++|++||.
T Consensus 89 ~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~ 168 (272)
T 4e3z_A 89 ADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSM 168 (272)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCT
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcch
Confidence 66666654 78999999997543 3467889999999999999988653 1 24589999997
Q ss_pred eecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccc
Q 042694 243 YVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPS 322 (554)
Q Consensus 243 ~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~ 322 (554)
....... +....|...+... ..+++.++.+.. ..|+++.+++||
T Consensus 169 ~~~~~~~---------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~-~~gi~v~~v~PG 212 (272)
T 4e3z_A 169 AAILGSA---------------------------TQYVDYAASKAAI--------DTFTIGLAREVA-AEGIRVNAVRPG 212 (272)
T ss_dssp HHHHCCT---------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEEC
T ss_pred HhccCCC---------------------------CCcchhHHHHHHH--------HHHHHHHHHHHH-HcCcEEEEEecC
Confidence 6543211 0000111111111 123333433332 348999999999
Q ss_pred eeeecccCC--ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 323 VIESTCKEP--FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 323 ~V~g~~~~p--~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.|.++.... .+.+.. . ... ......+..++|+|++++.++..... ...+++|++.++
T Consensus 213 ~v~t~~~~~~~~~~~~~----------~----~~~-----~~~~~~~~~~edvA~~i~~l~s~~~~--~~tG~~i~vdgG 271 (272)
T 4e3z_A 213 IIETDLHASGGLPDRAR----------E----MAP-----SVPMQRAGMPEEVADAILYLLSPSAS--YVTGSILNVSGG 271 (272)
T ss_dssp SBC-------------------------------------CCTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred CCcCCcccccCChHHHH----------H----Hhh-----cCCcCCCcCHHHHHHHHHHHhCCccc--cccCCEEeecCC
Confidence 997753321 011100 0 000 01112355689999999988754332 234689998775
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=142.98 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=124.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|+||||||+||++++++|+ ++. +|+++++.. + .+.+|++++ +..+.+.
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~---~V~~~~r~~-----------------~---~~~~D~~~~------~~~~~~~ 53 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKA---EVITAGRHS-----------------G---DVTVDITNI------DSIKKMY 53 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTS---EEEEEESSS-----------------S---SEECCTTCH------HHHHHHH
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCC---eEEEEecCc-----------------c---ceeeecCCH------HHHHHHH
Confidence 479999999999999999999 775 455554321 0 378999987 7777766
Q ss_pred c---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecccccceeeccccCC
Q 042694 191 K---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 191 ~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
+ ++|+|||+||.... .+.++..+++|+.|+.++++.+.+. .+-.++|++||.+.+....
T Consensus 54 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 123 (202)
T 3d7l_A 54 EQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIV---------- 123 (202)
T ss_dssp HHHCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSCCT----------
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCCCC----------
Confidence 5 48999999996532 2456788899999999999999763 1126899999976533210
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhh--cCCCcEEEEccceeeecccCCcccccc
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLE--RGDIPVVIIRPSVIESTCKEPFSGWME 337 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~--~~glp~~I~Rp~~V~g~~~~p~~g~~~ 337 (554)
.. . .|..+|...+.+.+.... ..|+++.++||+.++++... +.
T Consensus 124 ------------------~~------~------~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~----~~- 168 (202)
T 3d7l_A 124 ------------------QG------A------SAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK----LE- 168 (202)
T ss_dssp ------------------TC------H------HHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH----HG-
T ss_pred ------------------cc------H------HHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh----hh-
Confidence 00 1 122223344444443322 24899999999999875321 10
Q ss_pred CCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEe
Q 042694 338 GNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQI 397 (554)
Q Consensus 338 ~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~ 397 (554)
. .....++++++|+|++++.++. .. ..+++||+
T Consensus 169 -------------~---------~~~~~~~~~~~dva~~~~~~~~-~~----~~G~~~~v 201 (202)
T 3d7l_A 169 -------------P---------FFEGFLPVPAAKVARAFEKSVF-GA----QTGESYQV 201 (202)
T ss_dssp -------------G---------GSTTCCCBCHHHHHHHHHHHHH-SC----CCSCEEEE
T ss_pred -------------h---------hccccCCCCHHHHHHHHHHhhh-cc----ccCceEec
Confidence 0 0012468899999999887763 22 23578886
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-15 Score=143.16 Aligned_cols=212 Identities=17% Similarity=0.153 Sum_probs=137.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+||||||+|+||++++++|++.|. +|++.++.. .. ....++.++.+|++++ ++.+
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~-------~~-----~~~~~~~~~~~Dv~d~------~~v~ 84 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRNY---RVVATSRSI-------KP-----SADPDIHTVAGDISKP------ETAD 84 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSC-------CC-----CSSTTEEEEESCTTSH------HHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCh-------hh-----cccCceEEEEccCCCH------HHHH
Confidence 5689999999999999999999999886 455554321 00 0223788999999988 7777
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH---cCCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ---CNKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~---~~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+.. -.+..++|++||..+.....+
T Consensus 85 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~ 164 (260)
T 3un1_A 85 RIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVG 164 (260)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBTT
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCCC
Confidence 6665 79999999997532 346788999999999999998732 135679999999765432110
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
++...+...+... ..+++.++.+.. ..|+++.+++||.|.++...
T Consensus 165 --------------------------~~~~~Y~~sKaa~--------~~l~~~la~e~~-~~gI~vn~v~PG~v~t~~~~ 209 (260)
T 3un1_A 165 --------------------------MPSALASLTKGGL--------NAVTRSLAMEFS-RSGVRVNAVSPGVIKTPMHP 209 (260)
T ss_dssp --------------------------CCCHHHHHHHHHH--------HHHHHHHHHHTT-TTTEEEEEEEECCBCCTTSC
T ss_pred --------------------------CccHHHHHHHHHH--------HHHHHHHHHHhC-cCCeEEEEEeecCCCCCCCC
Confidence 1111111111111 123344443332 34899999999999775431
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+ ... .. .. ...-...+..++|+|++++.+.... ...++++++.++
T Consensus 210 ~--~~~------~~----~~---------~~~p~~r~~~~~dva~av~~L~~~~----~itG~~i~vdGG 254 (260)
T 3un1_A 210 A--ETH------ST----LA---------GLHPVGRMGEIRDVVDAVLYLEHAG----FITGEILHVDGG 254 (260)
T ss_dssp G--GGH------HH----HH---------TTSTTSSCBCHHHHHHHHHHHHHCT----TCCSCEEEESTT
T ss_pred H--HHH------HH----Hh---------ccCCCCCCcCHHHHHHHHHHhcccC----CCCCcEEEECCC
Confidence 1 000 00 00 0111234677999999998873222 234689999887
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=144.69 Aligned_cols=209 Identities=10% Similarity=0.063 Sum_probs=134.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|+||||||+||++++++|++.+. +|+++++.. ..+++.++.+|++++ ++++.+
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~---------------~~~~~~~~~~D~~~~------~~~~~~ 57 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGY---RVVVLDLRR---------------EGEDLIYVEGDVTRE------EDVRRA 57 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESSC---------------CSSSSEEEECCTTCH------HHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEccCc---------------cccceEEEeCCCCCH------HHHHHH
Confidence 57899999999999999999999886 455554321 023457899999987 777777
Q ss_pred hc------CccEEEEcCCCCCch-----------hhHHHHHHHhchHHHHHHHHHHHc-CC--------CceEEEEeece
Q 042694 190 AK------EVDVIVNSAANTTFD-----------ERYDIAIDINTRGPCRLMEFAKQC-NK--------LKLFVQVSTAY 243 (554)
Q Consensus 190 ~~------~vdiViH~AA~v~~~-----------~~~~~~~~~Nv~gt~~ll~la~~~-~~--------~k~~v~vST~~ 243 (554)
++ ++|+|||+|+..... +.++..+++|+.|+.++++++... .. ..++|++||..
T Consensus 58 ~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~ 137 (242)
T 1uay_A 58 VARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVA 137 (242)
T ss_dssp HHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTH
T ss_pred HHHHHhhCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChh
Confidence 66 899999999975431 278889999999999999998753 11 13899999987
Q ss_pred ecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccce
Q 042694 244 VNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 244 v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
.+.... ....|...+... ..+++.++.+.. ..|+++.++|||.
T Consensus 138 ~~~~~~----------------------------~~~~Y~~sK~a~--------~~~~~~l~~e~~-~~gi~v~~v~Pg~ 180 (242)
T 1uay_A 138 AFEGQI----------------------------GQAAYAASKGGV--------VALTLPAARELA-GWGIRVVTVAPGL 180 (242)
T ss_dssp HHHCCT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECS
T ss_pred hccCCC----------------------------CCchhhHHHHHH--------HHHHHHHHHHHh-hcCcEEEEEEecc
Confidence 654321 011111111111 022333333322 2489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|+++.....+.. .......+ .+ ....+++++|+|++++.++.... ..+++|++.++
T Consensus 181 v~t~~~~~~~~~---------~~~~~~~~-~~-------~~~~~~~~~dva~~~~~l~~~~~----~~G~~~~v~gG 236 (242)
T 1uay_A 181 FDTPLLQGLPEK---------AKASLAAQ-VP-------FPPRLGRPEEYAALVLHILENPM----LNGEVVRLDGA 236 (242)
T ss_dssp CSSHHHHTSCHH---------HHHHHHTT-CC-------SSCSCCCHHHHHHHHHHHHHCTT----CCSCEEEESTT
T ss_pred Ccchhhhccchh---------HHHHHHhh-CC-------CcccCCCHHHHHHHHHHHhcCCC----CCCcEEEEcCC
Confidence 987543221110 00000000 00 00246789999999998876522 23579999877
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=144.28 Aligned_cols=220 Identities=15% Similarity=0.106 Sum_probs=135.6
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
..++++||||||||+||++++++|++.|. +|++.++. ..+.+.+. ...++..+.+|++++ +
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~~~~------~ 73 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGS---KVIISGSNEEKLKSLGNA--------LKDNYTIEVCNLANK------E 73 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH--------HCSSEEEEECCTTSH------H
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHH--------hccCccEEEcCCCCH------H
Confidence 36789999999999999999999999886 45555432 22333222 234788899999987 7
Q ss_pred HHHHHhc---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccce
Q 042694 185 LADVIAK---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRGK 251 (554)
Q Consensus 185 ~~~~l~~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~~ 251 (554)
..+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||...+....
T Consensus 74 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 151 (249)
T 3f9i_A 74 ECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNP-- 151 (249)
T ss_dssp HHHHHHHTCSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCS--
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCC--
Confidence 7777765 79999999997542 2467899999999999998887532 3456899999976643211
Q ss_pred eeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC
Q 042694 252 VMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP 331 (554)
Q Consensus 252 i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p 331 (554)
....|...+..+ ..+++.++.+.. ..|+++.+++||.|.++....
T Consensus 152 --------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~t~~~~~ 196 (249)
T 3f9i_A 152 --------------------------GQANYCASKAGL--------IGMTKSLSYEVA-TRGITVNAVAPGFIKSDMTDK 196 (249)
T ss_dssp --------------------------CSHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECCBC------
T ss_pred --------------------------CCchhHHHHHHH--------HHHHHHHHHHHH-HcCcEEEEEecCccccCcccc
Confidence 111111111111 123344443332 348999999999996643321
Q ss_pred ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 332 FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 332 ~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... ....... ......+..++|+|++++.++..... .-.++++++.++
T Consensus 197 ~~~~---------~~~~~~~---------~~~~~~~~~~~dva~~~~~l~s~~~~--~~tG~~~~vdgG 245 (249)
T 3f9i_A 197 LNEK---------QREAIVQ---------KIPLGTYGIPEDVAYAVAFLASNNAS--YITGQTLHVNGG 245 (249)
T ss_dssp CCHH---------HHHHHHH---------HCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cCHH---------HHHHHHh---------cCCCCCCcCHHHHHHHHHHHcCCccC--CccCcEEEECCC
Confidence 1100 0000000 01123577899999999888765432 234689999876
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-15 Score=142.35 Aligned_cols=222 Identities=11% Similarity=0.069 Sum_probs=141.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||||+||++++++|++.|. +|++.++ ...+.+.+.... ...++.++.+|++++ ++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~ 68 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGA---TVVGTATSQASAEKFENSMKE-----KGFKARGLVLNISDI------ES 68 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEecCCCH------HH
Confidence 3578999999999999999999999876 4555443 222233222211 235789999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ .+|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||.......
T Consensus 69 ~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~ 148 (247)
T 3lyl_A 69 IQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGN 148 (247)
T ss_dssp HHHHHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC
Confidence 666654 58999999997642 3567889999999999999887542 244689999997654321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
+....|...+... ..+++.++.+... .|+++..++||.|..+.
T Consensus 149 ----------------------------~~~~~Y~~sK~a~--------~~~~~~la~e~~~-~gi~v~~v~PG~v~t~~ 191 (247)
T 3lyl_A 149 ----------------------------PGQTNYCAAKAGV--------IGFSKSLAYEVAS-RNITVNVVAPGFIATDM 191 (247)
T ss_dssp ----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCTT
T ss_pred ----------------------------CCcHHHHHHHHHH--------HHHHHHHHHHHHH-cCeEEEEEeeCcEeccc
Confidence 1111111111111 1244444444333 48999999999996643
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....+... .... ........+.+++|+|++++.++..... .-.++++++.++
T Consensus 192 ~~~~~~~~---------~~~~---------~~~~~~~~~~~~~dva~~i~~l~s~~~~--~~tG~~i~vdgG 243 (247)
T 3lyl_A 192 TDKLTDEQ---------KSFI---------ATKIPSGQIGEPKDIAAAVAFLASEEAK--YITGQTLHVNGG 243 (247)
T ss_dssp TTTSCHHH---------HHHH---------HTTSTTCCCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred chhccHHH---------HHHH---------hhcCCCCCCcCHHHHHHHHHHHhCCCcC--CccCCEEEECCC
Confidence 32211100 0000 0111124578899999999888754332 234689999876
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=142.85 Aligned_cols=235 Identities=11% Similarity=0.080 Sum_probs=140.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+.+|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+.... ....++.++.+|++++ +
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dv~d~------~ 89 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAGA---NIVLNGFGAPDEIRTVTDEVAG----LSSGTVLHHPADMTKP------S 89 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEECCCCHHHHHHHHHHHHT----TCSSCEEEECCCTTCH------H
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCChHHHHHHHHHHhh----ccCCcEEEEeCCCCCH------H
Confidence 5679999999999999999999999886 55665542 22222222211 1245789999999988 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
+.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||......
T Consensus 90 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 169 (281)
T 3v2h_A 90 EIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVA 169 (281)
T ss_dssp HHHHHHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccC
Confidence 7766654 79999999997532 3467889999999999999987421 24568999999765432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
. +....|...+..+ ..+++.++.+... .|+++..++||.|.++
T Consensus 170 ~----------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~~-~gI~vn~v~PG~v~t~ 212 (281)
T 3v2h_A 170 S----------------------------PFKSAYVAAKHGI--------MGLTKTVALEVAE-SGVTVNSICPGYVLTP 212 (281)
T ss_dssp C----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCC-
T ss_pred C----------------------------CCchHHHHHHHHH--------HHHHHHHHHHhhh-cCcEEEEEECCCCcCc
Confidence 1 1111121111111 1234444443332 4899999999999775
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....... ......... ..........+......++.++|+|++++.++..... .-.++++++.++
T Consensus 213 ~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~--~itG~~i~vdGG 277 (281)
T 3v2h_A 213 LVEKQIP---DQARTRGIT---EEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAA--QITGTHVSMDGG 277 (281)
T ss_dssp ---------------------------------CCTTCSCBCHHHHHHHHHHHHSSGGG--GCCSCEEEESTT
T ss_pred chhhhcc---hhhhhcCCC---HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcC--CCCCcEEEECCC
Confidence 4321110 000000000 0000000011122235688999999999888754332 124689998876
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.5e-15 Score=143.39 Aligned_cols=226 Identities=12% Similarity=0.139 Sum_probs=141.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||+|+||++++++|++.|. +|+++++ ...+.+.+.... ...++.++.+|++++ ++
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 69 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGA---RVVITGRTKEKLEEAKLEIEQ-----FPGQILTVQMDVRNT------DD 69 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHCC-----STTCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 5689999999999999999999999886 4555543 223333333322 235789999999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||......
T Consensus 70 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 149 (257)
T 3imf_A 70 IQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDA 149 (257)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccC
Confidence 666654 78999999996432 3567889999999999999988431 34568999999765432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+... ..+++.++.+.....|+++..++||.|.++
T Consensus 150 ~~----------------------------~~~~Y~asKaa~--------~~l~~~la~e~~~~~gIrvn~v~PG~v~t~ 193 (257)
T 3imf_A 150 GP----------------------------GVIHSAAAKAGV--------LAMTKTLAVEWGRKYGIRVNAIAPGPIERT 193 (257)
T ss_dssp CT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHHHHHCCEEEEEEECCBSSC
T ss_pred CC----------------------------CcHHHHHHHHHH--------HHHHHHHHHHhccccCeEEEEEEECCCcCC
Confidence 11 111121111111 124445544433234899999999999764
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... ..|... ..... ... ..-...+..++|+|++++.++..... --.++++++.++
T Consensus 194 ~~~~-~~~~~~-~~~~~--------~~~-----~~p~~r~~~pedvA~~v~~L~s~~~~--~itG~~i~vdGG 249 (257)
T 3imf_A 194 GGAD-KLWISE-EMAKR--------TIQ-----SVPLGRLGTPEEIAGLAYYLCSDEAA--YINGTCMTMDGG 249 (257)
T ss_dssp CCC---------CCSHH--------HHT-----TSTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cchh-hcccCH-HHHHH--------HHh-----cCCCCCCcCHHHHHHHHHHHcCchhc--CccCCEEEECCC
Confidence 3211 001110 00000 000 00112467889999999888765332 224689999887
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.1e-15 Score=142.42 Aligned_cols=226 Identities=14% Similarity=0.165 Sum_probs=137.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch----hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE----LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~----~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+++|+|+||||||+||++++++|++.|.+ +|+++++. ..+.+.+.. ...++.++.+|++++ .
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~--~v~~~~r~~~~~~~~~l~~~~-------~~~~~~~~~~D~~~~-----~ 68 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLK--NFVILDRVENPTALAELKAIN-------PKVNITFHTYDVTVP-----V 68 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCS--EEEEEESSCCHHHHHHHHHHC-------TTSEEEEEECCTTSC-----H
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCc--EEEEEecCchHHHHHHHHHhC-------CCceEEEEEEecCCC-----h
Confidence 46789999999999999999999998864 24544321 222332221 124788999999975 1
Q ss_pred HHHHHHh-------cCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHc-CC-----CceEEEEeeceecccccc
Q 042694 184 DLADVIA-------KEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC-NK-----LKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 184 ~~~~~l~-------~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~-~~-----~k~~v~vST~~v~~~~~~ 250 (554)
++.+.+. .++|+|||+||... .+.++..+++|+.|+.++++.+... .+ ..++|++||...+....
T Consensus 69 ~~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~- 146 (254)
T 1sby_A 69 AESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIH- 146 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT-
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCccCC-HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCC-
Confidence 3333333 37999999999754 4668889999999999999998652 11 35799999986653211
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
....|...+... ..+++.++.... ..|+++.+++||.|.++...
T Consensus 147 ---------------------------~~~~Y~~sK~a~--------~~~~~~la~~~~-~~gi~v~~v~Pg~v~t~~~~ 190 (254)
T 1sby_A 147 ---------------------------QVPVYSASKAAV--------VSFTNSLAKLAP-ITGVTAYSINPGITRTPLVH 190 (254)
T ss_dssp ---------------------------TSHHHHHHHHHH--------HHHHHHHHHHHH-HHSEEEEEEEECSEESHHHH
T ss_pred ---------------------------CchHHHHHHHHH--------HHHHHHHHHHhc-cCCeEEEEEecCCccCcccc
Confidence 111111111111 112333332221 24899999999999775432
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCccc
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLV 406 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it 406 (554)
....|.... .... ... ....+.+++++|++++.++.. . ..+.+|++.++...+++
T Consensus 191 ~~~~~~~~~----~~~~----~~~--------~~~~~~~~~dvA~~i~~~~~~-~----~~G~~~~v~gG~~~~~~ 245 (254)
T 1sby_A 191 TFNSWLDVE----PRVA----ELL--------LSHPTQTSEQCGQNFVKAIEA-N----KNGAIWKLDLGTLEAIE 245 (254)
T ss_dssp SCCCGGGSC----TTHH----HHH--------TTSCCEEHHHHHHHHHHHHHH-C----CTTCEEEEETTEEEECC
T ss_pred ccchhhhhh----HHHH----HHH--------hcCCCCCHHHHHHHHHHHHHc-C----CCCCEEEEeCCceeEec
Confidence 222221100 0000 000 012344789999999887753 2 23579999887323333
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.4e-15 Score=143.91 Aligned_cols=223 Identities=13% Similarity=0.119 Sum_probs=139.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.+|+|+||||+|+||++++++|++.|. +|+++ ++ ...+.+.+.... ...++.++.+|++++ ++
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~---~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~ 71 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGY---SVTVTYHSDTTAMETMKETYKD-----VEERLQFVQADVTKK------ED 71 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHTGG-----GGGGEEEEECCTTSH------HH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCC---EEEEEcCCChHHHHHHHHHHHh-----cCCceEEEEecCCCH------HH
Confidence 468999999999999999999999886 44544 22 222333333221 235789999999988 77
Q ss_pred HHHHhc-------CccEEEEcCCC--C---Cc----hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAAN--T---TF----DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~--v---~~----~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v~ 245 (554)
.+.+++ ++|+|||+||. . .+ .+.++..+++|+.|+..+++.+ ++ .+..++|++||..+.
T Consensus 72 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~g~iv~iss~~~~ 150 (264)
T 3i4f_A 72 LHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRK-QNFGRIINYGFQGAD 150 (264)
T ss_dssp HHHHHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEECCTTGG
T ss_pred HHHHHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHh-cCCCeEEEEeechhc
Confidence 766655 89999999993 2 11 3467889999999999999988 33 356799999987543
Q ss_pred ccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 246 GQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 246 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
+... .+....|...+... ..+++.++.+.. ..|+++.+++||.|.
T Consensus 151 ~~~~--------------------------~~~~~~Y~asKaa~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~ 195 (264)
T 3i4f_A 151 SAPG--------------------------WIYRSAFAAAKVGL--------VSLTKTVAYEEA-EYGITANMVCPGDII 195 (264)
T ss_dssp GCCC--------------------------CTTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECCCC
T ss_pred ccCC--------------------------CCCCchhHHHHHHH--------HHHHHHHHHHhh-hcCcEEEEEccCCcc
Confidence 2210 01111121111111 123344443332 248999999999998
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCC
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSV 401 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~ 401 (554)
++......... ... .... .-...+..++|+|++++.++..... .-.++++++.++.
T Consensus 196 t~~~~~~~~~~---------~~~----~~~~-----~p~~r~~~~~dva~~v~~l~s~~~~--~itG~~i~vdGG~ 251 (264)
T 3i4f_A 196 GEMKEATIQEA---------RQL----KEHN-----TPIGRSGTGEDIARTISFLCEDDSD--MITGTIIEVTGAV 251 (264)
T ss_dssp GGGGSCCHHHH---------HHC-----------------CCCCHHHHHHHHHHHHSGGGT--TCCSCEEEESCSC
T ss_pred CccchhccHHH---------HHH----Hhhc-----CCCCCCcCHHHHHHHHHHHcCcccC--CCCCcEEEEcCce
Confidence 75443211100 000 0000 0112467889999999988765332 2346899998873
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=8.2e-15 Score=145.36 Aligned_cols=222 Identities=15% Similarity=0.137 Sum_probs=136.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||||+||++++++|++.+. +|+++++ +..+.+.+.... ...++.++.+|++++ +.
T Consensus 42 l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~d~------~~ 107 (285)
T 2c07_A 42 GENKVALVTGAGRGIGREIAKMLAKSVS---HVICISRTQKSCDSVVDEIKS-----FGYESSGYAGDVSKK------EE 107 (285)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSS---EEEEEESSHHHHHHHHHHHHT-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHHHHh-----cCCceeEEECCCCCH------HH
Confidence 4678999999999999999999999875 4555542 222222222211 134788999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||...+...
T Consensus 108 v~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~ 187 (285)
T 2c07_A 108 ISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN 187 (285)
T ss_dssp HHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC
Confidence 666653 79999999997542 3567889999999988888777531 256799999998654321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. ....|...+... ..+++.++.+.. ..|+++.++|||.|.++.
T Consensus 188 ~----------------------------~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~ 230 (285)
T 2c07_A 188 V----------------------------GQANYSSSKAGV--------IGFTKSLAKELA-SRNITVNAIAPGFISSDM 230 (285)
T ss_dssp T----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBCC--
T ss_pred C----------------------------CCchHHHHHHHH--------HHHHHHHHHHHH-HhCcEEEEEEeCcEecCc
Confidence 1 000111111111 113334433332 248999999999997643
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....+. ... ....... + ...++.++|+|++++.++..... ...++++++.++
T Consensus 231 ~~~~~~---------~~~----~~~~~~~---~--~~~~~~~~dvA~~~~~l~~~~~~--~~~G~~i~v~gG 282 (285)
T 2c07_A 231 TDKISE---------QIK----KNIISNI---P--AGRMGTPEEVANLACFLSSDKSG--YINGRVFVIDGG 282 (285)
T ss_dssp ---CCH---------HHH----HHHHTTC---T--TSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhhcCH---------HHH----HHHHhhC---C--CCCCCCHHHHHHHHHHHhCCCcC--CCCCCEEEeCCC
Confidence 221110 000 0000000 1 12478899999999888754321 123678988776
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-15 Score=143.09 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=139.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||||+||++++++|++.|. +|+++++..-+...+.... ...++.++.+|++++ ++.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~l~~-----~~~~~~~~~~D~~~~------~~v~ 67 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGA---NIVLNGFGDPAPALAEIAR-----HGVKAVHHPADLSDV------AQIE 67 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEECSSCCHHHHHHHHT-----TSCCEEEECCCTTSH------HHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCchHHHHHHHHh-----cCCceEEEeCCCCCH------HHHH
Confidence 3578999999999999999999999876 4555543211222222111 134688899999987 7777
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeeceeccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+ ++ .+..++|++||...+....
T Consensus 68 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-~~~g~iv~isS~~~~~~~~ 146 (255)
T 2q2v_A 68 ALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRA-RNWGRIINIASVHGLVGST 146 (255)
T ss_dssp HHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEEECCGGGTSCCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCcEEEEEcCchhccCCC
Confidence 7766 89999999997542 3567889999999887777665 33 3568999999986643211
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
....|...+... ..+++.++.+.. ..|+++.++|||.|.++..
T Consensus 147 ----------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~~ 189 (255)
T 2q2v_A 147 ----------------------------GKAAYVAAKHGV--------VGLTKVVGLETA-TSNVTCNAICPGWVLTPLV 189 (255)
T ss_dssp ----------------------------TBHHHHHHHHHH--------HHHHHHHHHHTT-TSSEEEEEEEESSBCCHHH
T ss_pred ----------------------------CchhHHHHHHHH--------HHHHHHHHHHhc-ccCcEEEEEeeCCCcCcch
Confidence 011111111111 123444444332 3489999999999977532
Q ss_pred CCccccccCCCC-ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRM-MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~-~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.....-...... ...... .+.........+++++|+|++++.++..... ...+++|++.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~--~~tG~~~~vdgG 251 (255)
T 2q2v_A 190 QKQIDDRAANGGDPLQAQH--------DLLAEKQPSLAFVTPEHLGELVLFLCSEAGS--QVRGAAWNVDGG 251 (255)
T ss_dssp HHHHHHHHHHTCCHHHHHH--------HHHTTTCTTCCCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred hhhcccccccccchHHHHH--------HHHhccCCCCCCcCHHHHHHHHHHHhCCccC--CCCCCEEEECCC
Confidence 110000000000 000000 0000011123578999999999887754321 123679998876
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=141.65 Aligned_cols=218 Identities=12% Similarity=0.059 Sum_probs=133.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+++||||+|+||++++++|++.|. +|++++. +..+...++ ...++.++.+|++++ ++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dv~~~------~~ 67 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEGA---TVLGLDLKPPAGEEPAAE--------LGAAVRFRNADVTNE------AD 67 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSCC--------------------CEEEECCTTCH------HH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHH--------hCCceEEEEccCCCH------HH
Confidence 4689999999999999999999999886 4555432 212222111 134678899999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHHc-C--------CCceEEE
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQC-N--------KLKLFVQ 238 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~--------~~k~~v~ 238 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++++... . +..++|+
T Consensus 68 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~ 147 (257)
T 3tpc_A 68 ATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVN 147 (257)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEE
Confidence 776665 89999999997632 3568889999999999999998753 1 3457999
Q ss_pred EeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEE
Q 042694 239 VSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVI 318 (554)
Q Consensus 239 vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I 318 (554)
+||...+.... ....|...+... ..+++.++.+... .|+++..
T Consensus 148 isS~~~~~~~~----------------------------~~~~Y~asKaa~--------~~~~~~la~e~~~-~gi~vn~ 190 (257)
T 3tpc_A 148 TASIAAFDGQI----------------------------GQAAYAASKGGV--------AALTLPAARELAR-FGIRVVT 190 (257)
T ss_dssp ECCTHHHHCCT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEE
T ss_pred EechhhccCCC----------------------------CCcchHHHHHHH--------HHHHHHHHHHHHH-cCeEEEE
Confidence 99976643211 111121111111 1234444443332 4899999
Q ss_pred EccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEee
Q 042694 319 IRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIA 398 (554)
Q Consensus 319 ~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~ 398 (554)
++||.|.++.....+... ...... ..+ ....+..++|++++++.++.... -.++++++.
T Consensus 191 v~PG~v~t~~~~~~~~~~---------~~~~~~-~~p-------~~~r~~~~~dva~~v~~l~s~~~----itG~~i~vd 249 (257)
T 3tpc_A 191 IAPGIFDTPMMAGMPQDV---------QDALAA-SVP-------FPPRLGRAEEYAALVKHICENTM----LNGEVIRLD 249 (257)
T ss_dssp EEECCBSCC-----------------------C-CSS-------SSCSCBCHHHHHHHHHHHHHCTT----CCSCEEEES
T ss_pred EEeCCCCChhhccCCHHH---------HHHHHh-cCC-------CCCCCCCHHHHHHHHHHHcccCC----cCCcEEEEC
Confidence 999999764432211100 000000 000 00246788999999988876422 246899988
Q ss_pred CC
Q 042694 399 SS 400 (554)
Q Consensus 399 ~~ 400 (554)
++
T Consensus 250 GG 251 (257)
T 3tpc_A 250 GA 251 (257)
T ss_dssp TT
T ss_pred CC
Confidence 77
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-15 Score=143.99 Aligned_cols=227 Identities=13% Similarity=0.085 Sum_probs=138.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ...++.++.+|++++ ++
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~ 72 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGA---SVYTCSRNQKELNDCLTQWRS-----KGFKVEASVCDLSSR------SE 72 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCEEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCH------HH
Confidence 4689999999999999999999999886 45555432 12222222110 134788999999987 76
Q ss_pred HHHHh--------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIA--------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~--------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+. .++|++||+||.... .+.++..+++|+.|+.++++++... .+..++|++||...+..
T Consensus 73 ~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 152 (260)
T 2ae2_A 73 RQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALA 152 (260)
T ss_dssp HHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC
Confidence 66665 479999999997542 3467889999999999999988431 35679999999765432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
. +....|...+... ..+++.++.+.. ..|+++.+++||.|.++
T Consensus 153 ~----------------------------~~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~ 195 (260)
T 2ae2_A 153 V----------------------------PYEAVYGATKGAM--------DQLTRCLAFEWA-KDNIRVNGVGPGVIATS 195 (260)
T ss_dssp C----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHTG-GGTEEEEEEEECSBCSH
T ss_pred C----------------------------CCcchHHHHHHHH--------HHHHHHHHHHHh-hcCcEEEEEecCCCCCc
Confidence 1 1111111111111 012333333322 24899999999999664
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
... .+.... .....+.... +......++.++|+|++++.++..... ...++++++.++
T Consensus 196 ~~~---~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~dvA~~v~~l~s~~~~--~~tG~~~~vdgG 253 (260)
T 2ae2_A 196 LVE---MTIQDP-EQKENLNKLI---------DRCALRRMGEPKELAAMVAFLCFPAAS--YVTGQIIYVDGG 253 (260)
T ss_dssp HHH---HHTTSH-HHHHHHHHHH---------HTSTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred chh---hhccCh-hhHHHHHHHH---------hcCCCCCCCCHHHHHHHHHHHcCcccc--CCCCCEEEECCC
Confidence 221 100000 0000000000 000113478899999999887754321 224688998877
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=145.86 Aligned_cols=224 Identities=14% Similarity=0.108 Sum_probs=138.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ...++..+.+|++++ ++
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~------~~ 77 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGA---HVVVSSRKQENVDRTVATLQG-----EGLSVTGTVCHVGKA------ED 77 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEccCCCH------HH
Confidence 5689999999999999999999999876 45555432 12222222110 134688899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ ++|++||+||... + .+.++..+++|+.|+.++++.+... .+..++|++||...+..
T Consensus 78 ~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 157 (260)
T 2zat_A 78 RERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHP 157 (260)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCC
Confidence 666654 7999999999643 1 2467889999999999998887531 35679999999876543
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+... ..+++.++.+.. ..|+++.+++||.|..+
T Consensus 158 ~~----------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~ 200 (260)
T 2zat_A 158 FP----------------------------NLGPYNVSKTAL--------LGLTKNLAVELA-PRNIRVNCLAPGLIKTN 200 (260)
T ss_dssp CT----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBCSS
T ss_pred CC----------------------------CchhHHHHHHHH--------HHHHHHHHHHhc-ccCeEEEEEEECcccCc
Confidence 11 111121111111 123334433332 24899999999998654
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... .|.+. ........ .. ....+.+++|+|++++.++..... -..++++++.++
T Consensus 201 ~~~~--~~~~~-----~~~~~~~~-~~--------~~~~~~~~~dva~~v~~l~s~~~~--~~tG~~~~vdgG 255 (260)
T 2zat_A 201 FSQV--LWMDK-----ARKEYMKE-SL--------RIRRLGNPEDCAGIVSFLCSEDAS--YITGETVVVGGG 255 (260)
T ss_dssp TTHH--HHSSH-----HHHHHHHH-HH--------TCSSCBCGGGGHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred cchh--cccCh-----HHHHHHHh-cC--------CCCCCCCHHHHHHHHHHHcCcccC--CccCCEEEECCC
Confidence 3210 01000 00000000 00 013578899999999887754321 123689999887
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-15 Score=145.54 Aligned_cols=237 Identities=14% Similarity=0.081 Sum_probs=143.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-----------hHHHHHHHcCCchhhhccCcEEEEEccCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-----------LFKCLKQTYGKSYQAFMLSKLVPAVGNVCE 176 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-----------~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~ 176 (554)
+++|+++||||+|+||+++++.|++.|. +|++.++. ..+.+.+.... ......++.++.+|+++
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dv~~ 82 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEAGA---DIAICDRCENSDVVGYPLATADDLAETVAL--VEKTGRRCISAKVDVKD 82 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSCCTTCSSCCCCHHHHHHHHHH--HHHTTCCEEEEECCTTC
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCccccccccccccHHHHHHHHHH--HHhcCCeEEEEeCCCCC
Confidence 5789999999999999999999999886 45554431 01222211110 01124578999999998
Q ss_pred CCCCCCHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEE
Q 042694 177 NNLGLEEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQV 239 (554)
Q Consensus 177 ~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~v 239 (554)
+ ++.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++
T Consensus 83 ~------~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~i 156 (281)
T 3s55_A 83 R------AALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTV 156 (281)
T ss_dssp H------HHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred H------HHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 8 77766664 79999999997542 3567899999999999999987431 245689999
Q ss_pred eeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEE
Q 042694 240 STAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVII 319 (554)
Q Consensus 240 ST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~ 319 (554)
||...+.... ....|...+... ..+++.++.+.. ..|+++..+
T Consensus 157 sS~~~~~~~~----------------------------~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~vn~v 199 (281)
T 3s55_A 157 SSMLGHSANF----------------------------AQASYVSSKWGV--------IGLTKCAAHDLV-GYGITVNAV 199 (281)
T ss_dssp CCGGGGSCCT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHTG-GGTEEEEEE
T ss_pred CChhhcCCCC----------------------------CCchhHHHHHHH--------HHHHHHHHHHHh-hcCcEEEEE
Confidence 9976543211 111121111111 123444444333 248999999
Q ss_pred ccceeeecccCCcc---ccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEE
Q 042694 320 RPSVIESTCKEPFS---GWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQ 396 (554)
Q Consensus 320 Rp~~V~g~~~~p~~---g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn 396 (554)
+||.|.++...... .+... ...+.. ......+.........+..++|+|++++.++..... .-.+++++
T Consensus 200 ~PG~v~t~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~--~itG~~i~ 271 (281)
T 3s55_A 200 APGNIETPMTHNDFVFGTMRPD--LEKPTL----KDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASS--HITGTVLP 271 (281)
T ss_dssp EECSBCSTTTSSHHHHHC---------CCH----HHHHHHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred ecCcccCccccchhhhcccccc--ccccch----hHHHHHHHhhhccCcCCCCHHHHHHHHHHHcCCccc--CCCCCEEE
Confidence 99999876442100 00000 000000 000000000011125688999999999988765332 23468999
Q ss_pred eeCC
Q 042694 397 IASS 400 (554)
Q Consensus 397 ~~~~ 400 (554)
+.++
T Consensus 272 vdgG 275 (281)
T 3s55_A 272 IDAG 275 (281)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-15 Score=144.51 Aligned_cols=230 Identities=13% Similarity=0.136 Sum_probs=138.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||||+||++++++|++.|. +|+++++.. +.+.+.... ...++.++.+|++++ ++.+
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~-~~~~~~~~~-----~~~~~~~~~~D~~d~------~~v~ 74 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGA---TVAIADLDV-MAAQAVVAG-----LENGGFAVEVDVTKR------ASVD 74 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH-HHHHHHHHT-----CTTCCEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHHH-----HhcCCeEEEEeCCCH------HHHH
Confidence 4688999999999999999999999886 455554321 222221111 122678899999987 7777
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeeceeccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~v~~~~~ 249 (554)
.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+ ..++|++||.......
T Consensus 75 ~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 153 (263)
T 3ak4_A 75 AAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA- 153 (263)
T ss_dssp HHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC-
Confidence 6665 89999999997542 2467889999999999999988642 12 5799999997653321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
+....|...+... ..+++.++.+.. ..|+++.++|||.|.++..
T Consensus 154 ---------------------------~~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~~ 197 (263)
T 3ak4_A 154 ---------------------------PLLAHYSASKFAV--------FGWTQALAREMA-PKNIRVNCVCPGFVKTAMQ 197 (263)
T ss_dssp ---------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEECSBTTHHH
T ss_pred ---------------------------CCchhHHHHHHHH--------HHHHHHHHHHHh-HcCeEEEEEecccccChhh
Confidence 1111111111111 123334433332 2489999999999976532
Q ss_pred CCccccc--cCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWM--EGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~--~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.....+. ............+.. ......++.++|+|++++.++..... ...+++|++.++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~~~~~~~dvA~~v~~l~s~~~~--~~tG~~~~vdgG 259 (263)
T 3ak4_A 198 EREIIWEAELRGMTPEAVRAEYVS---------LTPLGRIEEPEDVADVVVFLASDAAR--FMTGQGINVTGG 259 (263)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHH---------TCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESSS
T ss_pred hhhccccccccccCcHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCcccc--CCCCCEEEECcC
Confidence 1100000 000000000000000 00113578899999999888764321 224679999876
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-15 Score=142.95 Aligned_cols=225 Identities=12% Similarity=0.050 Sum_probs=140.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+.... ....++.++.+|++++ ++
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~Dv~~~------~~ 74 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAGA---NVAVAGRSTADIDACVADLDQ----LGSGKVIGVQTDVSDR------AQ 74 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHT----TSSSCEEEEECCTTSH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh----hCCCcEEEEEcCCCCH------HH
Confidence 5789999999999999999999999886 45555432 22222222211 1125789999999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||.......
T Consensus 75 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~ 154 (262)
T 3pk0_A 75 CDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITG 154 (262)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC
Confidence 766654 89999999997532 3567888999999999999988653 245799999997542110
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
.+....|...+... ..+++.++.+... .|+++..++||.|.++.
T Consensus 155 ---------------------------~~~~~~Y~asK~a~--------~~l~~~la~e~~~-~gi~vn~v~PG~v~t~~ 198 (262)
T 3pk0_A 155 ---------------------------YPGWSHYGATKAAQ--------LGFMRTAAIELAP-HKITVNAIMPGNIMTEG 198 (262)
T ss_dssp ---------------------------CTTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECSBCCHH
T ss_pred ---------------------------CCCChhhHHHHHHH--------HHHHHHHHHHHHh-hCcEEEEEEeCcCcCcc
Confidence 01111122112111 1233444433332 48999999999997743
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSV 401 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~ 401 (554)
...... ........ .. + .-.+...+|+|++++.++..... --.++++++.++.
T Consensus 199 ~~~~~~---------~~~~~~~~-~~------p--~~r~~~p~dva~~v~~L~s~~~~--~itG~~i~vdGG~ 251 (262)
T 3pk0_A 199 LLENGE---------EYIASMAR-SI------P--AGALGTPEDIGHLAAFLATKEAG--YITGQAIAVDGGQ 251 (262)
T ss_dssp HHTTCH---------HHHHHHHT-TS------T--TSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTTT
T ss_pred ccccCH---------HHHHHHHh-cC------C--CCCCcCHHHHHHHHHHHhCcccc--CCcCCEEEECCCe
Confidence 211000 00000000 00 0 12356789999999888765331 2346899998873
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=141.58 Aligned_cols=223 Identities=15% Similarity=0.108 Sum_probs=141.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+++||||+|+||++++++|++.|. +|++.++ ...+.+.+.... ...++..+.+|++++ ++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~------~~ 75 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA---SVVVTDLKSEGAEAVAAAIRQ-----AGGKAIGLECNVTDE------QH 75 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC---EEEEEESSHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEECCCCCH------HH
Confidence 5789999999999999999999999986 4555543 222333222211 235789999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||...+...
T Consensus 76 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~- 154 (256)
T 3gaf_A 76 REAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTN- 154 (256)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCC-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCC-
Confidence 666654 79999999997542 3567889999999999999988531 245699999997654321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
+....|...+... ..+++.++.+.. ..|+.+..++||.|..+..
T Consensus 155 ---------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~-~~gi~vn~v~PG~v~T~~~ 198 (256)
T 3gaf_A 155 ---------------------------VRMASYGSSKAAV--------NHLTRNIAFDVG-PMGIRVNAIAPGAIKTDAL 198 (256)
T ss_dssp ---------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECCBCCHHH
T ss_pred ---------------------------CCchHHHHHHHHH--------HHHHHHHHHHHh-hhCcEEEEEEEccccCchh
Confidence 1111122111111 123444443333 2489999999999866422
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. +.. ........ ...-...+..++|+|++++.++..... --.++++++.++
T Consensus 199 ~~---~~~-----~~~~~~~~---------~~~p~~r~~~~~dva~~~~~L~s~~~~--~itG~~i~vdgG 250 (256)
T 3gaf_A 199 AT---VLT-----PEIERAML---------KHTPLGRLGEAQDIANAALFLCSPAAA--WISGQVLTVSGG 250 (256)
T ss_dssp HH---HCC-----HHHHHHHH---------TTCTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hh---ccC-----HHHHHHHH---------hcCCCCCCCCHHHHHHHHHHHcCCccc--CccCCEEEECCC
Confidence 10 000 00000000 011113467889999999988764332 234689999887
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-15 Score=147.38 Aligned_cols=124 Identities=12% Similarity=0.028 Sum_probs=92.0
Q ss_pred cCcEEEEecccccccHHHHHHHHh-hCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILR-TVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~-~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++++|+||||||+||++++++|++ .+. +|+++.+. ..+.+.+.... ...++.++.+|++++ +.
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~------~~ 68 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG---DVVLTARDVTRGQAAVQQLQA-----EGLSPRFHQLDIDDL------QS 68 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS---EEEEEESSHHHHHHHHHHHHH-----TTCCCEEEECCTTCH------HH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC---eEEEEeCChHHHHHHHHHHHh-----cCCeeEEEECCCCCH------HH
Confidence 578999999999999999999999 775 45555432 12222222110 124688899999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~ 246 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..++.
T Consensus 69 ~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~ 144 (276)
T 1wma_A 69 IRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVR 144 (276)
T ss_dssp HHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhc
Confidence 776665 89999999997532 3667889999999999999999863 1224899999987753
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-14 Score=139.48 Aligned_cols=229 Identities=17% Similarity=0.121 Sum_probs=141.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---------------hhHHHHHHHcCCchhhhccCcEEEEEc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---------------ELFKCLKQTYGKSYQAFMLSKLVPAVG 172 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---------------~~~~~l~~~~~~~~~~~~~~kv~~v~G 172 (554)
+++|+|+||||+|+||++++++|++.|. +|++++. ...+.+.+.... ...++..+.+
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 84 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEGA---DIIACDICAPVSASVTYAPASPEDLDETARLVED-----QGRKALTRVL 84 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHT-----TTCCEEEEEC
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeccccccccccccccCHHHHHHHHHHHHh-----cCCeEEEEEc
Confidence 6789999999999999999999999886 4555432 122222222211 2457889999
Q ss_pred cCCCCCCCCCHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCc
Q 042694 173 NVCENNLGLEEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLK 234 (554)
Q Consensus 173 Dl~~~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k 234 (554)
|++++ ++.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... ++-.
T Consensus 85 Dv~~~------~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g 158 (280)
T 3pgx_A 85 DVRDD------AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGG 158 (280)
T ss_dssp CTTCH------HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCE
T ss_pred CCCCH------HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCC
Confidence 99988 77766654 79999999998652 3567889999999999999988532 2246
Q ss_pred eEEEEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCC
Q 042694 235 LFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDI 314 (554)
Q Consensus 235 ~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~gl 314 (554)
++|++||...+.... ....|...+..+ ..+++.++.+... .|+
T Consensus 159 ~iv~isS~~~~~~~~----------------------------~~~~Y~asKaa~--------~~~~~~la~e~~~-~gi 201 (280)
T 3pgx_A 159 SIVVVSSSAGLKATP----------------------------GNGHYSASKHGL--------TALTNTLAIELGE-YGI 201 (280)
T ss_dssp EEEEECCGGGTSCCT----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHGG-GTE
T ss_pred EEEEEcchhhccCCC----------------------------CchhHHHHHHHH--------HHHHHHHHHHhhh-cCe
Confidence 899999976543211 111122112111 1234444443332 489
Q ss_pred cEEEEccceeeecccCCc--cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCC
Q 042694 315 PVVIIRPSVIESTCKEPF--SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDI 392 (554)
Q Consensus 315 p~~I~Rp~~V~g~~~~p~--~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~ 392 (554)
++..++||.|.++...+. ..+... .+.. .. ..+.. ......+..++|+|++++.++..... .-.+
T Consensus 202 ~vn~v~PG~v~t~~~~~~~~~~~~~~----~~~~---~~-~~~~~---~~~~~r~~~p~dvA~~v~~L~s~~~~--~itG 268 (280)
T 3pgx_A 202 RVNSIHPYSVETPMIEPEAMMEIFAR----HPSF---VH-SFPPM---PVQPNGFMTADEVADVVAWLAGDGSG--TLTG 268 (280)
T ss_dssp EEEEEEECSBCSTTCCHHHHHHHHHH----CGGG---GG-GSCCB---TTBCSSCBCHHHHHHHHHHHHSGGGT--TCSS
T ss_pred EEEEEeeCcccCcccchhhhhhhhhc----Cchh---hh-hhhhc---ccCCCCCCCHHHHHHHHHHHhCcccc--CCCC
Confidence 999999999977543210 000000 0000 00 00000 11112478899999999888765331 2346
Q ss_pred eEEEeeCC
Q 042694 393 NVYQIASS 400 (554)
Q Consensus 393 ~vyn~~~~ 400 (554)
+++++.++
T Consensus 269 ~~i~vdGG 276 (280)
T 3pgx_A 269 TQIPVDKG 276 (280)
T ss_dssp CEEEESTT
T ss_pred CEEEECCC
Confidence 89998876
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=140.36 Aligned_cols=222 Identities=16% Similarity=0.142 Sum_probs=136.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|+||||||+||++++++|++.|. +|+++.+ ...+.+.+.... ...++.++.+|++++ +
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~ 67 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGA---NVVVNYAGNEQKANEVVDEIKK-----LGSDAIAVRADVANA------E 67 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------H
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCH------H
Confidence 3578999999999999999999999886 4555433 112222222110 134788999999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
+.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||......
T Consensus 68 ~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 147 (246)
T 2uvd_A 68 DVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTG 147 (246)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCC
Confidence 7766655 79999999997542 3467889999999977777665421 25679999999755332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+... ..+++.++.+... .|+++.+++||.|..+
T Consensus 148 ~~----------------------------~~~~Y~asK~a~--------~~~~~~la~e~~~-~gi~v~~v~Pg~v~t~ 190 (246)
T 2uvd_A 148 NP----------------------------GQANYVAAKAGV--------IGLTKTSAKELAS-RNITVNAIAPGFIATD 190 (246)
T ss_dssp CT----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBGGG
T ss_pred CC----------------------------CCchHHHHHHHH--------HHHHHHHHHHhhh-cCeEEEEEEeccccCc
Confidence 10 011111111111 1244455444333 4899999999999654
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.....+. ..... ..... + ...++..+|+|++++.++..... -..++++++.++
T Consensus 191 ~~~~~~~---------~~~~~----~~~~~---p--~~~~~~~~dvA~~~~~l~s~~~~--~~tG~~~~vdgG 243 (246)
T 2uvd_A 191 MTDVLDE---------NIKAE----MLKLI---P--AAQFGEAQDIANAVTFFASDQSK--YITGQTLNVDGG 243 (246)
T ss_dssp CSSCCCT---------THHHH----HHHTC---T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred chhhcCH---------HHHHH----HHhcC---C--CCCCcCHHHHHHHHHHHcCchhc--CCCCCEEEECcC
Confidence 3221110 00000 00000 1 12478899999999888754321 223678888776
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=140.82 Aligned_cols=223 Identities=16% Similarity=0.143 Sum_probs=133.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||+|+||++++++|++.|. +|+++++. ..+.+.++ ...++..+.+|++++ ++
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~~~~------~~ 69 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGGA---KVVIVDRDKAGAERVAGE--------IGDAALAVAADISKE------AD 69 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH--------HCTTEEEEECCTTSH------HH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHH--------hCCceEEEEecCCCH------HH
Confidence 4689999999999999999999999875 45655432 22333322 235788999999987 76
Q ss_pred HHHHhc-------CccEEEEcCCCCC--------chhhHHHHHHHhchHHHHHHHHHHHcC-------CCceEEEEeece
Q 042694 186 ADVIAK-------EVDVIVNSAANTT--------FDERYDIAIDINTRGPCRLMEFAKQCN-------KLKLFVQVSTAY 243 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~~-------~~k~~v~vST~~ 243 (554)
.+.+.+ .+|++||+||... -.+.++..+++|+.|+.++++.+...- +..++|++||..
T Consensus 70 ~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~ 149 (261)
T 3n74_A 70 VDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTG 149 (261)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTT
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchh
Confidence 666654 7899999999754 135678899999999999988875421 133699999976
Q ss_pred ecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccce
Q 042694 244 VNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 244 v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
.+... +....|...+..+ ..+++.++.+... .|+.+..++||.
T Consensus 150 ~~~~~----------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~~-~gi~v~~v~PG~ 192 (261)
T 3n74_A 150 AGRPR----------------------------PNLAWYNATKGWV--------VSVTKALAIELAP-AKIRVVALNPVA 192 (261)
T ss_dssp TTSCC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEEC-
T ss_pred hcCCC----------------------------CCccHHHHHHHHH--------HHHHHHHHHHhhh-cCcEEEEEecCc
Confidence 54321 1111122112111 1234444443333 489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|..+......+-. ....... . .+......++.++|+|++++.++..... .-.++++++.++
T Consensus 193 v~t~~~~~~~~~~-----~~~~~~~----~-----~~~~~~~~~~~~~dva~~~~~l~s~~~~--~itG~~i~vdgG 253 (261)
T 3n74_A 193 GETPLLTTFMGED-----SEEIRKK----F-----RDSIPMGRLLKPDDLAEAAAFLCSPQAS--MITGVALDVDGG 253 (261)
T ss_dssp --------------------------------------CTTSSCCCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred ccChhhhhhcccC-----cHHHHHH----H-----hhcCCcCCCcCHHHHHHHHHHHcCCccc--CcCCcEEEecCC
Confidence 9765432111100 0000000 0 0111123578899999999887754321 234689999887
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-14 Score=139.21 Aligned_cols=220 Identities=14% Similarity=0.032 Sum_probs=135.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||||+||++++++|++.|. +|+++++.. +++.+.... ...++.++.+|++++ ++.+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~-~~~~~~~~~-----~~~~~~~~~~D~~~~------~~~~ 67 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGA---RVVLADVLD-EEGAATARE-----LGDAARYQHLDVTIE------EDWQ 67 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH-HHHHHHHHT-----TGGGEEEEECCTTCH------HHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHHH-----hCCceeEEEecCCCH------HHHH
Confidence 4678999999999999999999999886 455554321 222221111 124688899999987 7776
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeeceeccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+ ++|++||+|+.... .+.++..+++|+.|+..+.+.+ ++ .+..++|++||...+....
T Consensus 68 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~g~iv~isS~~~~~~~~ 146 (254)
T 1hdc_A 68 RVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKD-AGGGSIVNISSAAGLMGLA 146 (254)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEECCGGGTSCCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCCEEEEECchhhccCCC
Confidence 6665 89999999997542 3467889999999998655544 33 2567999999986643211
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
....|...+... ..+++.++.+.. ..|+++.++|||.|.++..
T Consensus 147 ----------------------------~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~~ 189 (254)
T 1hdc_A 147 ----------------------------LTSSYGASKWGV--------RGLSKLAAVELG-TDRIRVNSVHPGMTYTPMT 189 (254)
T ss_dssp ----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBCCHHH
T ss_pred ----------------------------CchhHHHHHHHH--------HHHHHHHHHHhh-hcCeEEEEEecccCcCccc
Confidence 111121111111 123334433332 3489999999999977532
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccc-hhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVV-PADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~v-pVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...+ .. .... ..... + ...+. +.+|+|++++.++..... ...++++++.++
T Consensus 190 ~~~~---~~--~~~~--------~~~~~---p--~~~~~~~~~dvA~~v~~l~s~~~~--~~tG~~~~vdgG 241 (254)
T 1hdc_A 190 AETG---IR--QGEG--------NYPNT---P--MGRVGNEPGEIAGAVVKLLSDTSS--YVTGAELAVDGG 241 (254)
T ss_dssp HHHT---CC--CSTT--------SCTTS---T--TSSCB-CHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cccc---hh--HHHH--------HHhcC---C--CCCCCCCHHHHHHHHHHHhCchhc--CCCCCEEEECCC
Confidence 1110 00 0000 00000 1 11356 889999999988765321 224688998876
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-14 Score=138.11 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=133.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+|+||||||+||++++++|++.|. +|+++++...+++.+... ....++..+.+|++++ ++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~------~~v~ 70 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGA---DIAIADLVPAPEAEAAIR-----NLGRRVLTVKCDVSQP------GDVE 70 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCHHHHHHHH-----HTTCCEEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCCchhHHHHHHH-----hcCCcEEEEEeecCCH------HHHH
Confidence 4678999999999999999999999886 455554322122222110 0234788999999987 6666
Q ss_pred HHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccccc
Q 042694 188 VIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~~~ 250 (554)
.+. .++|++||+||.... .+.++..+++|+.|+.++.+.+.. + .+..++|++||...+....
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~- 149 (249)
T 2ew8_A 71 AFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIE- 149 (249)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCS-
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCC-
Confidence 654 379999999997542 346788999999998888877532 1 2467999999986654311
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
....|...+... ..+++.++.+.. ..|+++.+++||.|.++...
T Consensus 150 ---------------------------~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~~~ 193 (249)
T 2ew8_A 150 ---------------------------AYTHYISTKAAN--------IGFTRALASDLG-KDGITVNAIAPSLVRTATTE 193 (249)
T ss_dssp ---------------------------SCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECCC------
T ss_pred ---------------------------CchhHHHHHHHH--------HHHHHHHHHHHH-hcCcEEEEEecCcCcCccch
Confidence 111121111111 123334433332 24899999999999765322
Q ss_pred -CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 -PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 -p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... . . ..... ... . + ...+..++|+|++++.++.... ....++++++.++
T Consensus 194 ~~~~~---~--~-~~~~~----~~~--~---~--~~~~~~p~dva~~~~~l~s~~~--~~~tG~~~~vdGG 245 (249)
T 2ew8_A 194 ASALS---A--M-FDVLP----NML--Q---A--IPRLQVPLDLTGAAAFLASDDA--SFITGQTLAVDGG 245 (249)
T ss_dssp ----------------------CTT--S---S--SCSCCCTHHHHHHHHHHTSGGG--TTCCSCEEEESSS
T ss_pred hcccc---c--h-hhHHH----Hhh--C---c--cCCCCCHHHHHHHHHHHcCccc--CCCCCcEEEECCC
Confidence 1100 0 0 00000 000 0 1 1246788999999988875432 1234678888776
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=141.25 Aligned_cols=233 Identities=13% Similarity=0.070 Sum_probs=136.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--h-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--L-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|+||||+|+||+++++.|++.|. +|+++++. . .+.+.+... .....++.++.+|++++ +
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~------~ 68 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGA---DIVLNGFGDAAEIEKVRAGLA----AQHGVKVLYDGADLSKG------E 68 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEECCSCHHHHHHHHHHHH----HHHTSCEEEECCCTTSH------H
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCC---EEEEEeCCcchHHHHHHHHHH----hccCCcEEEEECCCCCH------H
Confidence 3578999999999999999999999886 45555432 1 222222211 00134688899999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
+.+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||...+..
T Consensus 69 ~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 148 (260)
T 1x1t_A 69 AVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVA 148 (260)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcC
Confidence 6666654 79999999997542 3567889999999999999888531 24679999999865432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+... ..+++.++.+.. ..|+++.+++||.|.++
T Consensus 149 ~~----------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~ 191 (260)
T 1x1t_A 149 SA----------------------------NKSAYVAAKHGV--------VGFTKVTALETA-GQGITANAICPGWVRTP 191 (260)
T ss_dssp CT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHT-TTTEEEEEEEECCBCC-
T ss_pred CC----------------------------CCchHHHHHHHH--------HHHHHHHHHHhc-cCCEEEEEEeecCccCc
Confidence 11 011111111111 123333333322 34899999999999765
Q ss_pred ccCCc-cccccCCCC-ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPF-SGWMEGNRM-MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~-~g~~~~~~~-~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..... +........ ......... .... + ...+..++|++++++.++.... ....++++++.++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---p--~~~~~~p~dva~~~~~l~s~~~--~~~tG~~~~vdgG 256 (260)
T 1x1t_A 192 LVEKQISALAEKNGVDQETAARELL---SEKQ---P--SLQFVTPEQLGGTAVFLASDAA--AQITGTTVSVDGG 256 (260)
T ss_dssp -----------------------CH---HHHC---T--TCCCBCHHHHHHHHHHHHSGGG--TTCCSCEEEESTT
T ss_pred hHHHhhhhhccccCCchHHHHHHHh---hccC---C--CCCCcCHHHHHHHHHHHhChhh--cCCCCCEEEECCC
Confidence 43211 100000000 000000000 0000 1 1347789999999988875432 1234678988776
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-15 Score=143.76 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=91.4
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++++|+||||+|+||++++++|++.+... +|+++++. ..+.+.+. ...++.++.+|++++ +..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~--------~~~~~~~~~~D~~~~------~~~ 66 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSI--------KDSRVHVLPLTVTCD------KSL 66 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTC--------CCTTEEEEECCTTCH------HHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhc--------cCCceEEEEeecCCH------HHH
Confidence 46899999999999999999999977211 55655432 22222211 135789999999987 666
Q ss_pred HHHhc---------CccEEEEcCCCCC-c-------hhhHHHHHHHhchHHHHHHHHHHHc---C------C-----Cce
Q 042694 187 DVIAK---------EVDVIVNSAANTT-F-------DERYDIAIDINTRGPCRLMEFAKQC---N------K-----LKL 235 (554)
Q Consensus 187 ~~l~~---------~vdiViH~AA~v~-~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~------~-----~k~ 235 (554)
+.+.+ ++|+|||+||... . .+.++..+++|+.|+.++++++... . + ..+
T Consensus 67 ~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (250)
T 1yo6_A 67 DTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAA 146 (250)
T ss_dssp HHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCE
T ss_pred HHHHHHHHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcE
Confidence 66665 8999999999765 1 3567889999999999999887643 1 2 579
Q ss_pred EEEEeeceecc
Q 042694 236 FVQVSTAYVNG 246 (554)
Q Consensus 236 ~v~vST~~v~~ 246 (554)
+|++||...+.
T Consensus 147 iv~isS~~~~~ 157 (250)
T 1yo6_A 147 VITISSGLGSI 157 (250)
T ss_dssp EEEECCGGGCS
T ss_pred EEEeccCcccc
Confidence 99999986644
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-15 Score=146.60 Aligned_cols=231 Identities=13% Similarity=0.087 Sum_probs=138.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ...++.++.+|++++ ++
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~~~------~~ 85 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGL---RVFVCARGEEGLRTTLKELRE-----AGVEADGRTCDVRSV------PE 85 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCceEEEECCCCCH------HH
Confidence 4688999999999999999999999876 45555432 12222222110 134688999999987 76
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-----CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-----NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-----~~~k~~v~vST~~v~~ 246 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||.....
T Consensus 86 v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~ 165 (277)
T 2rhc_B 86 IEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ 165 (277)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc
Confidence 666654 79999999997532 2467889999999999999988652 1357999999975532
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. +....|...+... ..+++.++.+.. ..|+++.++|||.|.+
T Consensus 166 ~~----------------------------~~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~t 208 (277)
T 2rhc_B 166 GV----------------------------VHAAPYSASKHGV--------VGFTKALGLELA-RTGITVNAVCPGFVET 208 (277)
T ss_dssp CC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHT-TTEEEEEEEEECSBCS
T ss_pred CC----------------------------CCCccHHHHHHHH--------HHHHHHHHHHHH-HhCcEEEEEecCcCcC
Confidence 21 1111111111111 123334433322 3489999999999976
Q ss_pred cccCCccc-cccCCCC-ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKEPFSG-WMEGNRM-MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~p~~g-~~~~~~~-~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+....... +.+.... .......... .. + ...++.++|+|++++.++..... ...++++++.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------p--~~r~~~~~dvA~~v~~l~s~~~~--~~tG~~~~vdGG 273 (277)
T 2rhc_B 209 PMAASVREHYSDIWEVSTEEAFDRITA-RV------P--IGRYVQPSEVAEMVAYLIGPGAA--AVTAQALNVCGG 273 (277)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHH-HS------T--TSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred chhhhhhhhcccccccchHHHHHHHHh-cC------C--CCCCcCHHHHHHHHHHHhCchhc--CCCCcEEEECCC
Confidence 43211000 0000000 0000000000 00 1 13578899999999988754321 224689998876
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=142.04 Aligned_cols=227 Identities=11% Similarity=0.105 Sum_probs=138.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||||+||++++++|++.|. +|+++++ .......+... .....++.++.+|++++ ++
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~Dl~~~------~~ 78 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA---NVAVIYRSAADAVEVTEKVG----KEFGVKTKAYQCDVSNT------DI 78 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCTTHHHHHHHHH----HHHTCCEEEEECCTTCH------HH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCcchhhHHHHHHHH----HhcCCeeEEEEeeCCCH------HH
Confidence 4678999999999999999999999875 5565543 21111111110 01235788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v~~~ 247 (554)
.+.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... +...+||++||...+..
T Consensus 79 ~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 158 (265)
T 1h5q_A 79 VTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQII 158 (265)
T ss_dssp HHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcc
Confidence 665554 49999999997542 2467788999999999999988642 22478999999866433
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEcccee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPSVI 324 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~~V 324 (554)
..+ .. .+ ..+. .. |..+|...+.+.+... ...|+++.++|||.|
T Consensus 159 ~~~--~~------~~-------------~~~~------~~------Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v 205 (265)
T 1h5q_A 159 NQS--SL------NG-------------SLTQ------VF------YNSSKAACSNLVKGLAAEWASAGIRVNALSPGYV 205 (265)
T ss_dssp CEE--ET------TE-------------ECSC------HH------HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSB
T ss_pred ccc--cc------cc-------------cccc------cc------cHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Confidence 210 00 00 0011 11 2222333333333221 124899999999999
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.++....... ....... ... + ...+++++|+|++++.++..... ...+++|++.++
T Consensus 206 ~t~~~~~~~~---------~~~~~~~-~~~------~--~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gG 261 (265)
T 1h5q_A 206 NTDQTAHMDK---------KIRDHQA-SNI------P--LNRFAQPEEMTGQAILLLSDHAT--YMTGGEYFIDGG 261 (265)
T ss_dssp CCGGGGGSCH---------HHHHHHH-HTC------T--TSSCBCGGGGHHHHHHHHSGGGT--TCCSCEEEECTT
T ss_pred ccccccccch---------hHHHHHH-hcC------c--ccCCCCHHHHHHHHHhhccCchh--cCcCcEEEecCC
Confidence 7754321100 0000000 000 0 12477899999999988765321 224689999877
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=140.77 Aligned_cols=234 Identities=12% Similarity=0.064 Sum_probs=136.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... .....++.++.+|++++ +.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~------~~ 72 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGA---RLLLFSRNREKLEAAASRIAS---LVSGAQVDIVAGDIREP------GD 72 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH---HSTTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh---cCCCCeEEEEEccCCCH------HH
Confidence 4678999999999999999999999876 45555432 12222222110 00012788999999987 77
Q ss_pred HHHHhc------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 186 ADVIAK------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 186 ~~~l~~------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||...+....
T Consensus 73 v~~~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 152 (260)
T 2z1n_A 73 IDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQ 152 (260)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCCC
Confidence 776665 59999999996532 3467889999999997777666421 2567999999986654311
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
.. ..|..+|.. -..+++.++.+... .|+++.++|||.|.++..
T Consensus 153 ----------------------------~~------~~Y~~sK~a--~~~~~~~la~e~~~-~gi~v~~v~Pg~v~t~~~ 195 (260)
T 2z1n_A 153 ----------------------------DL------ALSNIMRLP--VIGVVRTLALELAP-HGVTVNAVLPSLILTDRV 195 (260)
T ss_dssp ----------------------------TB------HHHHHHTHH--HHHHHHHHHHHHGG-GTEEEEEEEECHHHHCCC
T ss_pred ----------------------------CC------chhHHHHHH--HHHHHHHHHHHHhh-hCeEEEEEEECCcccchh
Confidence 00 112222110 01234444443332 489999999999977543
Q ss_pred CCcc-ccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFS-GWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~-g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... .............. ....... + ...+..++|+|++++.++..... ...++++++.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~---~~~~~~~---p--~~r~~~~~dva~~v~~l~s~~~~--~~tG~~i~vdGG 257 (260)
T 2z1n_A 196 RSLAEERARRSGITVEEAL---KSMASRI---P--MGRVGKPEELASVVAFLASEKAS--FITGAVIPVDGG 257 (260)
T ss_dssp C--------------------------CC---T--TSSCCCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred hhhhhhhhcccCCcHHHHH---HHHHhcC---C--CCCccCHHHHHHHHHHHhCcccc--CCCCCEEEeCCC
Confidence 2000 00000000000000 0000000 1 12367899999999888754321 234678888775
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=144.25 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=113.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++++||||||||+||++++++|++.|.+ |++.++ ...+.+.+.... .....++.++.+|++++ +.
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~~---Vv~~~r~~~~~~~~~~~l~~---~~~~~~~~~~~~Dl~~~------~~ 73 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCK---VAIADIRQDSIDKALATLEA---EGSGPEVMGVQLDVASR------EG 73 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH---HTCGGGEEEEECCTTCH------HH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHh---cCCCCeEEEEECCCCCH------HH
Confidence 46889999999999999999999998864 454432 222333222211 00123789999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcC---------CCceEEEEeec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCN---------KLKLFVQVSTA 242 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~---------~~k~~v~vST~ 242 (554)
++.+.+ .+|+|||+||.... .+.++..+++|+.|+.++++.+...- +-.++|++||.
T Consensus 74 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~ 153 (319)
T 3ioy_A 74 FKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASM 153 (319)
T ss_dssp HHHHHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCG
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccc
Confidence 666654 67999999997532 35678899999999999999886531 23469999998
Q ss_pred eecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEE
Q 042694 243 YVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVI 318 (554)
Q Consensus 243 ~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I 318 (554)
..+.... .. . .|..+|. +++.++.+... .|+.+.+
T Consensus 154 a~~~~~~----------------------------~~------~------~Y~aSKaal~~~~~~la~e~~~-~gi~v~~ 192 (319)
T 3ioy_A 154 AAFLAAG----------------------------SP------G------IYNTTKFAVRGLSESLHYSLLK-YEIGVSV 192 (319)
T ss_dssp GGTCCCS----------------------------SS------H------HHHHHHHHHHHHHHHHHHHHGG-GTCEEEE
T ss_pred ccccCCC----------------------------CC------H------HHHHHHHHHHHHHHHHHHHhhh-cCCEEEE
Confidence 6644321 00 1 1223344 55666554443 4899999
Q ss_pred Eccceeeecc
Q 042694 319 IRPSVIESTC 328 (554)
Q Consensus 319 ~Rp~~V~g~~ 328 (554)
++||.|.++.
T Consensus 193 v~PG~v~T~~ 202 (319)
T 3ioy_A 193 LCPGLVKSYI 202 (319)
T ss_dssp ECCCCBC---
T ss_pred EEcCeEccCc
Confidence 9999996643
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-14 Score=137.92 Aligned_cols=224 Identities=14% Similarity=0.125 Sum_probs=138.5
Q ss_pred ccCcEEEEeccccc-ccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGF-LAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGF-lG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|+||||||+ ||++++++|++.|. +|+++++ +..+.+.+.... ....++.++.+|++++ +
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~Dl~~~------~ 86 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA---DVVISDYHERRLGETRDQLAD----LGLGRVEAVVCDVTST------E 86 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHT----TCSSCEEEEECCTTCH------H
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC---EEEEecCCHHHHHHHHHHHHh----cCCCceEEEEeCCCCH------H
Confidence 57899999999996 99999999999876 4555543 222333332211 1235899999999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeeceecc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v~~ 246 (554)
+.+.+.+ .+|+|||+||.... .+.++..+++|+.|+.++++.+... ++..++|++||...+.
T Consensus 87 ~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~ 166 (266)
T 3o38_A 87 AVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR 166 (266)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC
Confidence 7666654 68999999997542 3467889999999999999988753 1446899999976543
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. +....|...+... ..+++.++.+.. ..|+.+..++||.|..
T Consensus 167 ~~----------------------------~~~~~Y~~sKaa~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~t 209 (266)
T 3o38_A 167 AQ----------------------------HSQSHYAAAKAGV--------MALTRCSAIEAV-EFGVRINAVSPSIARH 209 (266)
T ss_dssp CC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECCCCC
T ss_pred CC----------------------------CCCchHHHHHHHH--------HHHHHHHHHHHH-HcCcEEEEEeCCcccc
Confidence 21 1111121111111 123334433332 2489999999999866
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+....... ...... + ........+..++|+|++++.++..... .-.++++++.++
T Consensus 210 ~~~~~~~~--------~~~~~~--------~-~~~~~~~r~~~~~dva~~i~~l~s~~~~--~~tG~~i~vdgG 264 (266)
T 3o38_A 210 KFLEKTSS--------SELLDR--------L-ASDEAFGRAAEPWEVAATIAFLASDYSS--YMTGEVVSVSSQ 264 (266)
T ss_dssp ----------------------------------CCTTSSCCCHHHHHHHHHHHHSGGGT--TCCSCEEEESSC
T ss_pred hhhhccCc--------HHHHHH--------H-HhcCCcCCCCCHHHHHHHHHHHcCcccc--CccCCEEEEcCC
Confidence 43211100 000000 0 0111123567899999999888765332 234689998876
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-14 Score=139.61 Aligned_cols=219 Identities=14% Similarity=0.118 Sum_probs=140.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|++.++ ...+.+.+.. ..++..+.+|++++ ++
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv~~~------~~ 71 (271)
T 3tzq_B 9 LENKVAIITGACGGIGLETSRVLARAGA---RVVLADLPETDLAGAAASV--------GRGAVHHVVDLTNE------VS 71 (271)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTSCHHHHHHHH--------CTTCEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHHh--------CCCeEEEECCCCCH------HH
Confidence 5789999999999999999999999886 4555543 2223333222 34678899999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc---------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF---------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v~ 245 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+ ++ .+..++|++||...+
T Consensus 72 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~iv~isS~~~~ 150 (271)
T 3tzq_B 72 VRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLIS-AGGGAIVNISSATAH 150 (271)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCEEEEECCHHHc
Confidence 777665 79999999997622 3467889999999999999998 33 356799999998664
Q ss_pred ccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 246 GQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 246 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
.... ....|...+... ..+++.++.+... .|+++.+++||.|.
T Consensus 151 ~~~~----------------------------~~~~Y~asKaa~--------~~l~~~la~e~~~-~gi~vn~v~PG~v~ 193 (271)
T 3tzq_B 151 AAYD----------------------------MSTAYACTKAAI--------ETLTRYVATQYGR-HGVRCNAIAPGLVR 193 (271)
T ss_dssp SBCS----------------------------SCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECCBC
T ss_pred CCCC----------------------------CChHHHHHHHHH--------HHHHHHHHHHHhh-cCEEEEEEEeCCCc
Confidence 3211 111122111111 1233444433322 48999999999998
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
++.... .+ .......+.. ....-.+...+|+|++++.++..... --.++++++.++
T Consensus 194 t~~~~~--~~------~~~~~~~~~~---------~~~~~r~~~p~dvA~~v~~L~s~~~~--~itG~~i~vdGG 249 (271)
T 3tzq_B 194 TPRLEV--GL------PQPIVDIFAT---------HHLAGRIGEPHEIAELVCFLASDRAA--FITGQVIAADSG 249 (271)
T ss_dssp CTTTC-----------CHHHHHHHHT---------TSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred Cccccc--cC------CHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCcccC--CcCCCEEEECCC
Confidence 754320 00 0000000000 00112356789999999888765432 234689999877
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-14 Score=140.55 Aligned_cols=223 Identities=13% Similarity=0.110 Sum_probs=140.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|++.++ ...+.+.++... ...++.++.+|++++ ++
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~------~~ 95 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGA---QVAVAARHSDALQVVADEIAG-----VGGKALPIRCDVTQP------DQ 95 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSGGGGHHHHHHHHH-----TTCCCEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEEcCCCCH------HH
Confidence 5789999999999999999999999886 4554432 333333333211 234788999999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~v~~~ 247 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+ -.++|++||......
T Consensus 96 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~ 175 (276)
T 3r1i_A 96 VRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHII 175 (276)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhccc
Confidence 776665 79999999997643 3567888999999999999988642 12 267999999765332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
... +....|...+... ..+++.++.+... .|+++..++||.|..+
T Consensus 176 ~~~--------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~~-~gIrvn~v~PG~v~T~ 220 (276)
T 3r1i_A 176 NIP--------------------------QQVSHYCTSKAAV--------VHLTKAMAVELAP-HQIRVNSVSPGYIRTE 220 (276)
T ss_dssp CCS--------------------------SCCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECCBCST
T ss_pred CCC--------------------------CCcchHHHHHHHH--------HHHHHHHHHHHhh-cCcEEEEEeeCCCcCC
Confidence 100 0111122111111 1234444443332 4899999999999764
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.....+.+.. .... .. + ...+...+|+|++++.++..... --.++++++.++
T Consensus 221 ~~~~~~~~~~----------~~~~-~~------p--~~r~~~pedvA~~v~fL~s~~~~--~itG~~i~vdGG 272 (276)
T 3r1i_A 221 LVEPLADYHA----------LWEP-KI------P--LGRMGRPEELTGLYLYLASAASS--YMTGSDIVIDGG 272 (276)
T ss_dssp TTGGGGGGHH----------HHGG-GS------T--TSSCBCGGGSHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred ccccchHHHH----------HHHh-cC------C--CCCCcCHHHHHHHHHHHcCcccc--CccCcEEEECcC
Confidence 4322211110 0000 00 0 12356789999999888765332 234689998876
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-14 Score=137.54 Aligned_cols=223 Identities=13% Similarity=0.058 Sum_probs=135.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH-HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF-KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~-~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+++|+|+||||||+||++++++|++.|. +|+++++..- +.+.+.. .+ .++.+|++++ ++.
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~---------~~-~~~~~D~~~~------~~~ 64 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGA---LVALCDLRPEGKEVAEAI---------GG-AFFQVDLEDE------RER 64 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTTHHHHHHHH---------TC-EEEECCTTCH------HHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChhHHHHHHHh---------hC-CEEEeeCCCH------HHH
Confidence 4678999999999999999999999886 4555543211 2222211 13 6789999987 666
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||.......
T Consensus 65 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~- 143 (256)
T 2d1y_A 65 VRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE- 143 (256)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCC-
Confidence 66554 78999999997543 2467889999999999999988542 246799999997653321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
+....|...+... ..+++.++.+.. ..|+++.+++||.|..+..
T Consensus 144 ---------------------------~~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~~ 187 (256)
T 2d1y_A 144 ---------------------------QENAAYNASKGGL--------VNLTRSLALDLA-PLRIRVNAVAPGAIATEAV 187 (256)
T ss_dssp ---------------------------TTBHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBCCHHH
T ss_pred ---------------------------CCChhHHHHHHHH--------HHHHHHHHHHHh-hcCeEEEEEeeCCccCchh
Confidence 0111111111111 023333333332 2489999999999865321
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
. .+............ .+ .+......+++++|+|++++.++..... ...++++++.++
T Consensus 188 ~---~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~dvA~~~~~l~s~~~~--~~~G~~~~v~gG 244 (256)
T 2d1y_A 188 L---EAIALSPDPERTRR--------DW-EDLHALRRLGKPEEVAEAVLFLASEKAS--FITGAILPVDGG 244 (256)
T ss_dssp H---HHHC--------CH--------HH-HTTSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred h---hccccccCCHHHHH--------HH-HhcCCCCCCcCHHHHHHHHHHHhCchhc--CCCCCEEEECCC
Confidence 1 11000000000000 00 0111123578999999999988765321 224679999887
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-14 Score=141.14 Aligned_cols=221 Identities=15% Similarity=0.101 Sum_probs=140.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch----hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE----LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~----~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+++|+||||||+|+||++++++|++.|.+ |++.+.. ..+.+.+... ....++.++.+|++++
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G~~---V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dv~d~------ 112 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREGAD---VAINYLPAEEEDAQQVKALIE-----ECGRKAVLLPGDLSDE------ 112 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEECCGGGHHHHHHHHHHHH-----HTTCCEEECCCCTTSH------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCcchhHHHHHHHHHH-----HcCCcEEEEEecCCCH------
Confidence 57899999999999999999999998864 4544322 1222222211 1235788999999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceeccc
Q 042694 184 DLADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~ 247 (554)
++.+.+.+ ++|++||+||... + .+.++..+++|+.|+..+++.+... .+-.++|++||...+..
T Consensus 113 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~ 192 (294)
T 3r3s_A 113 SFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQP 192 (294)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccC
Confidence 66665553 7999999999743 1 3567899999999999999999753 12248999999876543
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+..+ ..+++.++.+... .|+++..++||.|.++
T Consensus 193 ~~----------------------------~~~~Y~asKaa~--------~~l~~~la~e~~~-~gI~vn~v~PG~v~t~ 235 (294)
T 3r3s_A 193 SP----------------------------HLLDYAATKAAI--------LNYSRGLAKQVAE-KGIRVNIVAPGPIWTA 235 (294)
T ss_dssp CT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECSBCSH
T ss_pred CC----------------------------CchHHHHHHHHH--------HHHHHHHHHHHhh-cCeEEEEEecCcCccc
Confidence 21 111121111111 1234444444333 4899999999999875
Q ss_pred ccCC---ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEP---FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p---~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... .+..... +.. ..-...+...+|+|++++.++..... --.++++++.++
T Consensus 236 ~~~~~~~~~~~~~~----------~~~---------~~p~~r~~~p~dvA~~v~~L~s~~~~--~itG~~i~vdGG 290 (294)
T 3r3s_A 236 LQISGGQTQDKIPQ----------FGQ---------QTPMKRAGQPAELAPVYVYLASQESS--YVTAEVHGVCGG 290 (294)
T ss_dssp HHHTTTSCGGGSTT----------TTT---------TSTTSSCBCGGGGHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cccccCCCHHHHHH----------HHh---------cCCCCCCcCHHHHHHHHHHHhCcccc--CCCCCEEEECCC
Confidence 3110 0111100 000 00112356789999999888765332 234689999887
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=142.63 Aligned_cols=222 Identities=11% Similarity=0.002 Sum_probs=138.8
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEE-Ecch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFI-INAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~-~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
...+|+|+||||+|+||++++++|++.|.+ |++ .++. ..+...+... ....++.++.+|++++
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~---v~i~~~r~~~~~~~~~~~l~-----~~~~~~~~~~~Dl~~~------ 88 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAADGFN---IGVHYHRDAAGAQETLNAIV-----ANGGNGRLLSFDVANR------ 88 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSCHHHHHHHHHHHH-----HTTCCEEEEECCTTCH------
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCchHHHHHHHHHHH-----hcCCceEEEEecCCCH------
Confidence 356889999999999999999999998864 433 3221 1122222111 1235788999999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH----cCCCceEEEEeeceec
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ----CNKLKLFVQVSTAYVN 245 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~----~~~~k~~v~vST~~v~ 245 (554)
++.+.+.+ .+|+|||+||.... .+.++..+++|+.|+.++++.+.. ..+..++|++||....
T Consensus 89 ~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~ 168 (267)
T 4iiu_A 89 EQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGV 168 (267)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhc
Confidence 66666654 79999999997542 356788999999999999998741 1356799999997654
Q ss_pred ccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 246 GQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 246 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
.... ....|...+..+ ..+++.++.+... .|+++.+++||.|.
T Consensus 169 ~~~~----------------------------~~~~Y~asKaa~--------~~~~~~la~e~~~-~gi~v~~v~PG~v~ 211 (267)
T 4iiu_A 169 MGNR----------------------------GQVNYSAAKAGI--------IGATKALAIELAK-RKITVNCIAPGLID 211 (267)
T ss_dssp HCCT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBC
T ss_pred cCCC----------------------------CCchhHHHHHHH--------HHHHHHHHHHHhh-cCeEEEEEEEeeec
Confidence 3211 111121111111 1245555554433 48999999999996
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.+.....+.+.. . ... ......+..++|+|++++.++..... .-.++++++.++
T Consensus 212 t~~~~~~~~~~~------~--------~~~-----~~p~~~~~~~edva~~~~~L~s~~~~--~itG~~i~vdGG 265 (267)
T 4iiu_A 212 TGMIEMEESALK------E--------AMS-----MIPMKRMGQAEEVAGLASYLMSDIAG--YVTRQVISINGG 265 (267)
T ss_dssp STTCCCCHHHHH------H--------HHH-----TCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred CCcccccHHHHH------H--------HHh-----cCCCCCCcCHHHHHHHHHHHhCCccc--CccCCEEEeCCC
Confidence 643321111110 0 000 00112467889999999888765331 234688988775
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=140.82 Aligned_cols=228 Identities=13% Similarity=0.107 Sum_probs=136.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ...++..+.+|++++ ++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~ 84 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGA---RVYTCSRNEKELDECLEIWRE-----KGLNVEGSVCDLLSR------TE 84 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCceEEEECCCCCH------HH
Confidence 5689999999999999999999999886 45555432 12222222110 134788999999987 66
Q ss_pred HHHHh--------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIA--------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~--------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+. ..+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|++||...+..
T Consensus 85 ~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~ 164 (273)
T 1ae1_A 85 RDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA 164 (273)
T ss_dssp HHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCC
Confidence 66665 579999999997532 3567888999999999999988421 24679999999876543
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+... ..+++.++.+.. ..|+++.+++||.|.++
T Consensus 165 ~~----------------------------~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~ 207 (273)
T 1ae1_A 165 LP----------------------------SVSLYSASKGAI--------NQMTKSLACEWA-KDNIRVNSVAPGVILTP 207 (273)
T ss_dssp CT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBC--
T ss_pred CC----------------------------CcchhHHHHHHH--------HHHHHHHHHHHh-hcCcEEEEEEeCCCcCc
Confidence 11 111111111111 123334433332 24899999999999775
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..... ............ ...... + ...+..++|+|++++.++..... ...++++++.++
T Consensus 208 ~~~~~---~~~~~~~~~~~~----~~~~~~---p--~~r~~~p~dvA~~v~~l~s~~~~--~~tG~~i~vdGG 266 (273)
T 1ae1_A 208 LVETA---IKKNPHQKEEID----NFIVKT---P--MGRAGKPQEVSALIAFLCFPAAS--YITGQIIWADGG 266 (273)
T ss_dssp --------------CHHHHH----HHHHHS---T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhhhh---hhcccCcHHHHH----HHHhcC---C--CCCCcCHHHHHHHHHHHhCcccc--CcCCCEEEECCC
Confidence 43211 000000000000 000000 1 12367889999999887754321 224688998876
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-14 Score=140.92 Aligned_cols=226 Identities=14% Similarity=0.071 Sum_probs=135.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-h--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-E--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|+|+||||+|+||+++++.|++.|. +|+++++ . ..+.+.+... .....++.++.+|++++.- ..+
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~--~~~ 79 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGF---RVVVHYRHSEGAAQRLVAELN----AARAGSAVLCKGDLSLSSS--LLD 79 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHH----HHSTTCEEEEECCCSSSTT--HHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCChHHHHHHHHHHH----HhcCCceEEEeccCCCccc--cHH
Confidence 4678999999999999999999999886 4555543 2 2222222211 0013478899999987510 003
Q ss_pred HHHHHhc-------CccEEEEcCCCCCch------------------hhHHHHHHHhchHHHHHHHHHHHc--CCC----
Q 042694 185 LADVIAK-------EVDVIVNSAANTTFD------------------ERYDIAIDINTRGPCRLMEFAKQC--NKL---- 233 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~~------------------~~~~~~~~~Nv~gt~~ll~la~~~--~~~---- 233 (554)
..+.+.+ .+|++||+||..... +.++..+++|+.|+..+++.+... .+.
T Consensus 80 ~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~ 159 (276)
T 1mxh_A 80 CCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRS 159 (276)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------C
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCC
Confidence 3343333 799999999975321 667889999999999999999763 123
Q ss_pred --ceEEEEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc
Q 042694 234 --KLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER 311 (554)
Q Consensus 234 --k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~ 311 (554)
.++|++||...+... +....|...+... ..+++.++.+.. .
T Consensus 160 ~~g~iv~isS~~~~~~~----------------------------~~~~~Y~asK~a~--------~~l~~~la~e~~-~ 202 (276)
T 1mxh_A 160 RNLSVVNLCDAMTDLPL----------------------------PGFCVYTMAKHAL--------GGLTRAAALELA-P 202 (276)
T ss_dssp CCEEEEEECCGGGGSCC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-G
T ss_pred CCcEEEEECchhhcCCC----------------------------CCCeehHHHHHHH--------HHHHHHHHHHHh-h
Confidence 689999998664321 1111121111111 123334433332 2
Q ss_pred CCCcEEEEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCC
Q 042694 312 GDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPD 391 (554)
Q Consensus 312 ~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~ 391 (554)
.|+.+.+++||.|.++ . ..+. ........ .. + ...++..++|+|++++.++..... ...
T Consensus 203 ~gi~v~~v~PG~v~t~-~-~~~~---------~~~~~~~~-~~------p-~~r~~~~~~dva~~v~~l~s~~~~--~~t 261 (276)
T 1mxh_A 203 RHIRVNAVAPGLSLLP-P-AMPQ---------ETQEEYRR-KV------P-LGQSEASAAQIADAIAFLVSKDAG--YIT 261 (276)
T ss_dssp GTEEEEEEEESSBSCC-S-SSCH---------HHHHHHHT-TC------T-TTSCCBCHHHHHHHHHHHHSGGGT--TCC
T ss_pred cCeEEEEEecCcccCC-c-cCCH---------HHHHHHHh-cC------C-CCCCCCCHHHHHHHHHHHhCcccc--Ccc
Confidence 4899999999999775 2 1110 00000000 00 1 112277899999999888754321 224
Q ss_pred CeEEEeeCC
Q 042694 392 INVYQIASS 400 (554)
Q Consensus 392 ~~vyn~~~~ 400 (554)
++++++.++
T Consensus 262 G~~~~vdgG 270 (276)
T 1mxh_A 262 GTTLKVDGG 270 (276)
T ss_dssp SCEEEESTT
T ss_pred CcEEEECCc
Confidence 678998776
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=141.05 Aligned_cols=223 Identities=13% Similarity=0.085 Sum_probs=136.4
Q ss_pred ccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+++|+|+||||+ |+||++++++|++.|. +|+++++.. .+.+.+... ...++.++.+|++++
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~l~~------~~~~~~~~~~D~~~~------ 70 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA---EVALSYQAERLRPEAEKLAE------ALGGALLFRADVTQD------ 70 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHTC---EEEEEESCGGGHHHHHHHHH------HTTCCEEEECCTTCH------
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHHHH------hcCCcEEEECCCCCH------
Confidence 467899999999 9999999999999886 455553321 111211110 012367899999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeecee
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v 244 (554)
++.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+-.++|++||...
T Consensus 71 ~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~ 150 (261)
T 2wyu_A 71 EELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYAS 150 (261)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGG
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccc
Confidence 66666654 78999999997542 3467889999999999999999752 11248999999755
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcccee
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
.... +....|...+... ..+++.++.+.. ..|+++.+++||.|
T Consensus 151 ~~~~----------------------------~~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v 193 (261)
T 2wyu_A 151 EKVV----------------------------PKYNVMAIAKAAL--------EASVRYLAYELG-PKGVRVNAISAGPV 193 (261)
T ss_dssp TSBC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEECCC
T ss_pred cCCC----------------------------CCchHHHHHHHHH--------HHHHHHHHHHHh-hhCcEEEEEeeCCC
Confidence 3321 1111111111111 123334433332 24899999999999
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.++.....+.. ......+... . + ...+..++|+|++++.++..... ...++++++.++
T Consensus 194 ~t~~~~~~~~~-------~~~~~~~~~~-~------p--~~~~~~~~dva~~v~~l~s~~~~--~~tG~~~~vdgG 251 (261)
T 2wyu_A 194 RTVAARSIPGF-------TKMYDRVAQT-A------P--LRRNITQEEVGNLGLFLLSPLAS--GITGEVVYVDAG 251 (261)
T ss_dssp CCTGGGGCTTH-------HHHHHHHHHH-S------T--TSSCCCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cCchhhhcccc-------HHHHHHHHhc-C------C--CCCCCCHHHHHHHHHHHcChhhc--CCCCCEEEECCC
Confidence 87543211110 0000000000 0 0 12356789999999888754321 224689999887
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=141.03 Aligned_cols=220 Identities=13% Similarity=0.079 Sum_probs=139.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|+||||+|+||++++++|++.|.+ |++... ...+.+.+.... ...++.++.+|++++ +
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G~~---V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d~------~ 91 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAGAK---VAVNYASSAGAADEVVAAIAA-----AGGEAFAVKADVSQE------S 91 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTSH------H
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCChHHHHHHHHHHHh-----cCCcEEEEECCCCCH------H
Confidence 57899999999999999999999998864 444332 222223222211 235788999999988 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
+.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++++... .+..++|++||......
T Consensus 92 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 171 (269)
T 4dmm_A 92 EVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMG 171 (269)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC
Confidence 7666654 79999999997642 3567889999999999999987431 24568999999765332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+..+ ..+++.++.+... .|+++..++||.|..+
T Consensus 172 ~~----------------------------~~~~Y~asK~a~--------~~l~~~la~e~~~-~gi~vn~v~PG~v~T~ 214 (269)
T 4dmm_A 172 NP----------------------------GQANYSAAKAGV--------IGLTKTVAKELAS-RGITVNAVAPGFIATD 214 (269)
T ss_dssp CT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECCBTTS
T ss_pred CC----------------------------CchhHHHHHHHH--------HHHHHHHHHHHhh-hCcEEEEEEECCCcCc
Confidence 11 111111111111 1244445444333 4899999999999654
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... ... .. ..... -...+..++|+|++++.++..+.. .--.++++++.++
T Consensus 215 ~~~~---~~~-----~~--------~~~~~-----p~~r~~~~~dvA~~v~~l~s~~~~-~~itG~~i~vdGG 265 (269)
T 4dmm_A 215 MTSE---LAA-----EK--------LLEVI-----PLGRYGEAAEVAGVVRFLAADPAA-AYITGQVINIDGG 265 (269)
T ss_dssp CSCH---HHH-----HH--------HGGGC-----TTSSCBCHHHHHHHHHHHHHCGGG-GGCCSCEEEESTT
T ss_pred cccc---ccH-----HH--------HHhcC-----CCCCCCCHHHHHHHHHHHhCCccc-CCCcCCEEEECCC
Confidence 3211 100 00 00000 012466789999999888765221 1123689999877
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=141.84 Aligned_cols=223 Identities=15% Similarity=0.095 Sum_probs=138.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++|+|+||||+|+||++++++|++.|.+ |++. ++ ...+.+.+.... ...++.++.+|++++ ++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~---vv~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 68 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYN---IVINYARSKKAALETAEEIEK-----LGVKVLVVKANVGQP------AK 68 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESSCHHHHHHHHHHHHT-----TTCCEEEEECCTTCH------HH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCE---EEEEcCCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCH------HH
Confidence 5789999999999999999999998864 4443 32 222223222211 235789999999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||...+...
T Consensus 69 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~ 148 (258)
T 3oid_A 69 IKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYL 148 (258)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCC
Confidence 666654 67999999986432 3467889999999999999988532 245699999997654321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
+....|...+... ..+++.++.+.. ..|+.+..++||.|..+.
T Consensus 149 ----------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~-~~gi~vn~v~PG~v~T~~ 191 (258)
T 3oid_A 149 ----------------------------ENYTTVGVSKAAL--------EALTRYLAVELS-PKQIIVNAVSGGAIDTDA 191 (258)
T ss_dssp ----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHTG-GGTEEEEEEEECCBCSGG
T ss_pred ----------------------------CCcHHHHHHHHHH--------HHHHHHHHHHHh-hcCcEEEEEeeCCCcChh
Confidence 1111122111111 123444444333 248999999999996643
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....+.. ......... .. + ...+..++|+|++++.++..... --.++++++.++
T Consensus 192 ~~~~~~~-------~~~~~~~~~-~~------p--~~r~~~~~dva~~v~~L~s~~~~--~itG~~i~vdGG 245 (258)
T 3oid_A 192 LKHFPNR-------EDLLEDARQ-NT------P--AGRMVEIKDMVDTVEFLVSSKAD--MIRGQTIIVDGG 245 (258)
T ss_dssp GGGCTTH-------HHHHHHHHH-HC------T--TSSCBCHHHHHHHHHHHTSSTTT--TCCSCEEEESTT
T ss_pred hhhcccC-------HHHHHHHHh-cC------C--CCCCcCHHHHHHHHHHHhCcccC--CccCCEEEECCC
Confidence 2211110 000000000 00 0 13467889999999887754321 234689999887
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=141.13 Aligned_cols=224 Identities=13% Similarity=0.096 Sum_probs=140.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+++|+|+||||+|+||++++++|++.|.+ |+++++ +..+.+.+.... ...++..+.+|++++ ++.
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~------~~v 94 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAGAH---VLAWGRTDGVKEVADEIAD-----GGGSAEAVVADLADL------EGA 94 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSTHHHHHHHHHHT-----TTCEEEEEECCTTCH------HHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEcCHHHHHHHHHHHHh-----cCCcEEEEEecCCCH------HHH
Confidence 57899999999999999999999998864 454443 222233222211 235788999999987 665
Q ss_pred HHHhc------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 187 DVIAK------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 187 ~~l~~------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||...+....
T Consensus 95 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~- 173 (273)
T 3uf0_A 95 ANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGR- 173 (273)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCS-
T ss_pred HHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCC-
Confidence 55543 79999999997643 3467889999999999999987431 2457899999976543211
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
....|...+... ..+++.++.+... .|+++..++||.|.++...
T Consensus 174 ---------------------------~~~~Y~asKaa~--------~~l~~~la~e~~~-~gI~vn~v~PG~v~T~~~~ 217 (273)
T 3uf0_A 174 ---------------------------NVAAYAASKHAV--------VGLTRALASEWAG-RGVGVNALAPGYVVTANTA 217 (273)
T ss_dssp ---------------------------SCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCSGGGH
T ss_pred ---------------------------CChhHHHHHHHH--------HHHHHHHHHHHhh-cCcEEEEEEeCCCcCCchh
Confidence 111122111111 1234444443332 4899999999999764331
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
. +... ......... .. + ...+..++|+|++++.++..... --.++++++.++
T Consensus 218 ~---~~~~----~~~~~~~~~-~~------p--~~r~~~pedva~~v~~L~s~~a~--~itG~~i~vdGG 269 (273)
T 3uf0_A 218 A---LRAD----DERAAEITA-RI------P--AGRWATPEDMVGPAVFLASDAAS--YVHGQVLAVDGG 269 (273)
T ss_dssp H---HHTS----HHHHHHHHH-HS------T--TSSCBCGGGGHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred h---cccC----HHHHHHHHh-cC------C--CCCCCCHHHHHHHHHHHhCchhc--CCcCCEEEECcC
Confidence 1 1000 000000000 00 0 12467789999999888765332 234689999877
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-14 Score=138.58 Aligned_cols=222 Identities=13% Similarity=0.112 Sum_probs=139.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|+||||+|+||++++++|++.|. +|++.+. ...+.+.+... ....++.++.+|++++ +
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~Dv~d~------~ 94 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGA---AVALTYVNAAERAQAVVSEIE-----QAGGRAVAIRADNRDA------E 94 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHH-----HTTCCEEEEECCTTCH------H
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCCHHHHHHHHHHHH-----hcCCcEEEEECCCCCH------H
Confidence 5789999999999999999999999886 4554422 22222222221 1245788999999988 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceeccccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~ 249 (554)
+.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||.......
T Consensus 95 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~- 173 (271)
T 3v2g_A 95 AIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVP- 173 (271)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCC-
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCC-
Confidence 7666655 79999999997542 3467899999999999999998753 345689999985332110
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
.+....|...+..+ ..+++.++.+... .|+++..++||.|..+..
T Consensus 174 --------------------------~~~~~~Y~asKaa~--------~~l~~~la~e~~~-~gIrvn~v~PG~v~T~~~ 218 (271)
T 3v2g_A 174 --------------------------WPGISLYSASKAAL--------AGLTKGLARDLGP-RGITVNIVHPGSTDTDMN 218 (271)
T ss_dssp --------------------------STTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECSBCSSSS
T ss_pred --------------------------CCCchHHHHHHHHH--------HHHHHHHHHHhhh-hCeEEEEEecCCCcCCcc
Confidence 01111122112111 1234444443333 489999999999976543
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...+.+.. .. .. .. + ...+...+|+|++++.++..... --.++++++.++
T Consensus 219 ~~~~~~~~------~~----~~-~~------~--~~r~~~pedvA~~v~fL~s~~~~--~itG~~i~vdGG 268 (271)
T 3v2g_A 219 PADGDHAE------AQ----RE-RI------A--TGSYGEPQDIAGLVAWLAGPQGK--FVTGASLTIDGG 268 (271)
T ss_dssp CSSCSSHH------HH----HH-TC------T--TSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cccchhHH------HH----Hh-cC------C--CCCCCCHHHHHHHHHHHhCcccC--CccCCEEEeCcC
Confidence 21111100 00 00 00 0 12356789999999887754331 234688888776
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=140.84 Aligned_cols=219 Identities=13% Similarity=0.084 Sum_probs=134.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+. ...++.++.+|++++ ++
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dv~d~------~~ 87 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQGA---IVGLHGTREDKLKEIAAD--------LGKDVFVFSANLSDR------KS 87 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH--------HCSSEEEEECCTTSH------HH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHH--------hCCceEEEEeecCCH------HH
Confidence 5789999999999999999999999886 45555432 22222222 235789999999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||.......
T Consensus 88 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~ 167 (266)
T 3grp_A 88 IKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGN 167 (266)
T ss_dssp HHHHHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC------
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCC
Confidence 766664 79999999997542 3567889999999977776665321 355799999997653321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. .. ..|..+|... ..+++.++.+... .|+++..++||.|..+.
T Consensus 168 ~----------------------------~~------~~Y~asKaa~--~~~~~~la~e~~~-~gI~vn~v~PG~v~t~~ 210 (266)
T 3grp_A 168 P----------------------------GQ------TNYCAAKAGL--IGFSKALAQEIAS-RNITVNCIAPGFIKSAM 210 (266)
T ss_dssp -----------------------------CH------HHHHHHHHHH--HHHHHHHHHHHGG-GTEEEEEEEECSBCSHH
T ss_pred C----------------------------Cc------hhHHHHHHHH--HHHHHHHHHHhhh-hCcEEEEEeeCcCCCch
Confidence 1 00 1122221000 1244455444433 48999999999997643
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...... ........ ..-...+..++|+|++++.++..... --.++++++.++
T Consensus 211 ~~~~~~---------~~~~~~~~---------~~p~~r~~~~edvA~~v~~L~s~~~~--~itG~~i~vdGG 262 (266)
T 3grp_A 211 TDKLNE---------KQKEAIMA---------MIPMKRMGIGEEIAFATVYLASDEAA--YLTGQTLHINGG 262 (266)
T ss_dssp HHTCCH---------HHHHHHHT---------TCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhccCH---------HHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCcccc--CccCCEEEECCC
Confidence 211110 00000000 01113456789999999888765332 234689998876
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-14 Score=139.50 Aligned_cols=222 Identities=15% Similarity=0.077 Sum_probs=137.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|+||||+|+||++++++|++.|. +|+++.+ ...+.+.+... ....++.++.+|++++ +
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~------~ 92 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMGL---KVWINYRSNAEVADALKNELE-----EKGYKAAVIKFDAASE------S 92 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHH-----HTTCCEEEEECCTTCH------H
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCHHHHHHHHHHHH-----hcCCceEEEECCCCCH------H
Confidence 5789999999999999999999999886 4555433 12222222221 1235789999999987 6
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
+.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||......
T Consensus 93 ~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 172 (271)
T 4iin_A 93 DFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERG 172 (271)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCC
Confidence 6666654 79999999997643 2567899999999999988887542 24578999999765332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
. +....|...+.... .+++.++.+.. ..|+.+..++||.|..+
T Consensus 173 ~----------------------------~~~~~Y~asK~a~~--------~~~~~la~e~~-~~gi~v~~v~PG~v~T~ 215 (271)
T 4iin_A 173 N----------------------------MGQTNYSASKGGMI--------AMSKSFAYEGA-LRNIRFNSVTPGFIETD 215 (271)
T ss_dssp C----------------------------TTCHHHHHHHHHHH--------HHHHHHHHHHH-TTTEEEEEEEECSBCCC
T ss_pred C----------------------------CCchHhHHHHHHHH--------HHHHHHHHHHH-HhCcEEEEEEeCcccCC
Confidence 1 11111211111110 12333333322 35899999999998654
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.....+... ...... ......+..++++|++++.++..... .-.++++++.++
T Consensus 216 ~~~~~~~~~---------~~~~~~---------~~~~~~~~~p~dvA~~i~~l~s~~~~--~itG~~i~vdGG 268 (271)
T 4iin_A 216 MNANLKDEL---------KADYVK---------NIPLNRLGSAKEVAEAVAFLLSDHSS--YITGETLKVNGG 268 (271)
T ss_dssp ---------------------CGG---------GCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred chhhhcHHH---------HHHHHh---------cCCcCCCcCHHHHHHHHHHHhCCCcC--CCcCCEEEeCCC
Confidence 332111100 000000 01113477899999999888765432 234689998876
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-14 Score=137.83 Aligned_cols=128 Identities=15% Similarity=0.079 Sum_probs=92.6
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.+++++|+||||||+||++++++|++.+....+|+++++. ..+.+.+... ...++.++.+|++++ +
T Consensus 18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~------~~~~~~~~~~Dl~~~------~ 85 (267)
T 1sny_A 18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK------NHSNIHILEIDLRNF------D 85 (267)
T ss_dssp --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHH------HCTTEEEEECCTTCG------G
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhc------cCCceEEEEecCCCh------H
Confidence 3678999999999999999999999987321256665432 1222222110 134789999999987 6
Q ss_pred HHHHHhc---------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHcC---------C-----C
Q 042694 185 LADVIAK---------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQCN---------K-----L 233 (554)
Q Consensus 185 ~~~~l~~---------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~~---------~-----~ 233 (554)
..+.+.+ ++|+|||+||... + .+.++..+++|+.|+.++++++...- + .
T Consensus 86 ~v~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (267)
T 1sny_A 86 AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGR 165 (267)
T ss_dssp GHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTT
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCC
Confidence 6666655 7999999999765 1 35678899999999999999886530 1 4
Q ss_pred ceEEEEeeceecc
Q 042694 234 KLFVQVSTAYVNG 246 (554)
Q Consensus 234 k~~v~vST~~v~~ 246 (554)
.++|++||...+.
T Consensus 166 ~~iv~isS~~~~~ 178 (267)
T 1sny_A 166 AAIINMSSILGSI 178 (267)
T ss_dssp CEEEEECCGGGCS
T ss_pred ceEEEEecccccc
Confidence 6899999986654
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=145.98 Aligned_cols=239 Identities=13% Similarity=0.115 Sum_probs=148.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc------------hhHHHHHHHcCCchhhhccCcEEEEEccCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA------------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVC 175 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~------------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~ 175 (554)
+++|+||||||+|+||+++++.|++.|. +|++++. ...+.+.+.... ...++.++.+|++
T Consensus 25 l~gk~vlVTGas~GIG~aia~~la~~G~---~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~ 96 (322)
T 3qlj_A 25 VDGRVVIVTGAGGGIGRAHALAFAAEGA---RVVVNDIGVGLDGSPASGGSAAQSVVDEITA-----AGGEAVADGSNVA 96 (322)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECCCBCTTSSBTCTTSHHHHHHHHHHH-----TTCEEEEECCCTT
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCcccccccccccHHHHHHHHHHHHh-----cCCcEEEEECCCC
Confidence 6789999999999999999999999886 5555532 222233222211 2357889999999
Q ss_pred CCCCCCCHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CC--------
Q 042694 176 ENNLGLEEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NK-------- 232 (554)
Q Consensus 176 ~~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~-------- 232 (554)
++ ++.+.+++ .+|++||+||.... .+.++..+++|+.|+..+++++... ..
T Consensus 97 d~------~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~ 170 (322)
T 3qlj_A 97 DW------DQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAV 170 (322)
T ss_dssp SH------HHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CH------HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCC
Confidence 88 77666654 79999999997642 3467889999999999999988542 10
Q ss_pred CceEEEEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcC
Q 042694 233 LKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERG 312 (554)
Q Consensus 233 ~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~ 312 (554)
-.++|++||........ ....|...+..+ ..+++.++.+... .
T Consensus 171 ~g~IV~isS~~~~~~~~----------------------------~~~~Y~asKaal--------~~l~~~la~e~~~-~ 213 (322)
T 3qlj_A 171 DGRIINTSSGAGLQGSV----------------------------GQGNYSAAKAGI--------ATLTLVGAAEMGR-Y 213 (322)
T ss_dssp CEEEEEECCHHHHHCBT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-G
T ss_pred CcEEEEEcCHHHccCCC----------------------------CCccHHHHHHHH--------HHHHHHHHHHhcc-c
Confidence 14899999976543211 111121111111 1234444433322 4
Q ss_pred CCcEEEEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCC
Q 042694 313 DIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDI 392 (554)
Q Consensus 313 glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~ 392 (554)
|+.+..++|| +..+... .+... .. ..+.....++.++|++++++.++..... .-.+
T Consensus 214 gI~vn~v~PG-~~t~~~~---~~~~~------~~------------~~~~~~~~~~~pedva~~v~~L~s~~~~--~itG 269 (322)
T 3qlj_A 214 GVTVNAIAPS-ARTRMTE---TVFAE------MM------------ATQDQDFDAMAPENVSPLVVWLGSAEAR--DVTG 269 (322)
T ss_dssp TEEEEEEEEC-TTSCCSC---CSCCC--------------------------CCTTCGGGTHHHHHHHTSGGGG--GCCS
T ss_pred CcEEEEecCC-CCCccch---hhhhh------hh------------hccccccCCCCHHHHHHHHHHHhCcccc--CCCC
Confidence 8999999999 5322111 11100 00 0111223566789999999888754332 1235
Q ss_pred eEEEeeCCCC---------------CcccHHHHHHHHHhHhccC
Q 042694 393 NVYQIASSVV---------------NPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 393 ~vyn~~~~~~---------------~~it~~e~~~~~~~~~~~~ 421 (554)
.++++.++.. ..++..|+.+.+.+.++..
T Consensus 270 ~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~ 313 (322)
T 3qlj_A 270 KVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLGKA 313 (322)
T ss_dssp CEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHHHS
T ss_pred CEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhhcc
Confidence 7888877621 1236689999888888754
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-14 Score=137.67 Aligned_cols=219 Identities=14% Similarity=0.068 Sum_probs=139.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+++||||+|+||++++++|++.|. +|++.++. ..+.+.+.. ..+...+.+|++++ ++
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv~d~------~~ 69 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERGA---KVIGTATSESGAQAISDYL--------GDNGKGMALNVTNP------ES 69 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHH--------GGGEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHh--------cccceEEEEeCCCH------HH
Confidence 4689999999999999999999999886 45555432 222222222 23567899999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||.......
T Consensus 70 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~ 149 (248)
T 3op4_A 70 IEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGN 149 (248)
T ss_dssp HHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC
Confidence 776665 79999999997542 3577889999999999999988541 245689999997553321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
+....|...+... ..+++.++.+... .|+++..++||.|..+.
T Consensus 150 ----------------------------~~~~~Y~asK~a~--------~~l~~~la~e~~~-~gi~vn~v~PG~v~T~~ 192 (248)
T 3op4_A 150 ----------------------------AGQANYAAAKAGV--------IGFTKSMAREVAS-RGVTVNTVAPGFIETDM 192 (248)
T ss_dssp ----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBSSTT
T ss_pred ----------------------------CCChHHHHHHHHH--------HHHHHHHHHHHHH-hCeEEEEEeeCCCCCch
Confidence 1111121111111 1244555544433 48999999999986543
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....+. ........ ......+..++|++++++.++..... .-.++++++.++
T Consensus 193 ~~~~~~---------~~~~~~~~---------~~p~~r~~~p~dva~~v~~L~s~~~~--~itG~~i~vdgG 244 (248)
T 3op4_A 193 TKALND---------EQRTATLA---------QVPAGRLGDPREIASAVAFLASPEAA--YITGETLHVNGG 244 (248)
T ss_dssp TTTSCH---------HHHHHHHH---------TCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhhcCH---------HHHHHHHh---------cCCCCCCcCHHHHHHHHHHHcCCccC--CccCcEEEECCC
Confidence 221110 00000000 00113467899999999887754332 234689998876
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=141.88 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=90.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ...++.++.+|++++ +.
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~------~~ 94 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLKS---KLVLWDINKHGLEETAAKCKG-----LGAKVHTFVVDCSNR------ED 94 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEEcCHHHHHHHHHHHHh-----cCCeEEEEEeeCCCH------HH
Confidence 5689999999999999999999999876 45555432 22222222111 134788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||...+.
T Consensus 95 v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 172 (272)
T 1yb1_A 95 IYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV 172 (272)
T ss_dssp HHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC
T ss_pred HHHHHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC
Confidence 666554 79999999997543 2457789999999988887776431 3567999999987654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-14 Score=141.83 Aligned_cols=217 Identities=15% Similarity=0.067 Sum_probs=129.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|++.++. ..+.+.+.... ...++.++.+|++++ +.
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~------~~ 94 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA---RLVLSDVDQPALEQAVNGLRG-----QGFDAHGVVCDVRHL------DE 94 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCceEEEEccCCCH------HH
Confidence 5789999999999999999999999886 45555432 22222222211 235788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+.++++.+... +...++|++||...+..
T Consensus 95 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~ 174 (301)
T 3tjr_A 95 MVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVP 174 (301)
T ss_dssp HHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC
Confidence 666654 79999999997532 3467889999999999999987541 12468999999765432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
. +....|...+..+ ..+++.++.+.. ..|+.+.+++||.|..+
T Consensus 175 ~----------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~T~ 217 (301)
T 3tjr_A 175 N----------------------------AGLGTYGVAKYGV--------VGLAETLAREVK-PNGIGVSVLCPMVVETK 217 (301)
T ss_dssp C----------------------------TTBHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEECCSCCCSS
T ss_pred C----------------------------CCchHHHHHHHHH--------HHHHHHHHHHhc-ccCcEEEEEECCccccc
Confidence 1 1111121111111 123444444333 34899999999998653
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHH
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQ 383 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~ 383 (554)
........... ... ......+.. +......+++++++||++++.++..
T Consensus 218 ~~~~~~~~~~~--~~~--~~~~~~~~~----~~~~~~~~~~~pedvA~~i~~~l~~ 265 (301)
T 3tjr_A 218 LVSNSERIRGA--DYG--MSATPEGAF----GPLPTQDESVSADDVARLTADAILA 265 (301)
T ss_dssp HHHHHHHHC------------------------------CCCHHHHHHHHHHHHHH
T ss_pred cccccccccch--hhc--cccChhhhc----cccccccCCCCHHHHHHHHHHHHhc
Confidence 21100000000 000 000000000 1112234689999999999998876
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=143.51 Aligned_cols=241 Identities=15% Similarity=0.109 Sum_probs=140.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+..... .....++.++.+|++++ ++
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~---~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~~Dv~d~------~~ 92 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGA---QVTITGRNEDRLEETKQQILKA--GVPAEKINAVVADVTEA------SG 92 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHT--TCCGGGEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhc--CCCCceEEEEecCCCCH------HH
Confidence 5689999999999999999999999886 45555432 222222221100 00012788999999987 76
Q ss_pred HHHHhc-------CccEEEEcCCCCC-----c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT-----F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
.+.+.+ ++|++||+||... + .+.++..+++|+.|+.++++.+... .+ .++|++||...+.
T Consensus 93 v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~ 171 (297)
T 1xhl_A 93 QDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGP 171 (297)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSS
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhcc
Confidence 666654 7999999999643 2 2467889999999999999988652 23 6999999976543
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
... +....|...+... ..+++.++.+.. ..|+++.++|||.|.+
T Consensus 172 ~~~---------------------------~~~~~Y~asKaa~--------~~l~~~la~el~-~~gI~v~~v~PG~v~T 215 (297)
T 1xhl_A 172 QAH---------------------------SGYPYYACAKAAL--------DQYTRCTAIDLI-QHGVRVNSVSPGAVAT 215 (297)
T ss_dssp SCC---------------------------TTSHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEECCBCS
T ss_pred CCC---------------------------CCcchHHHHHHHH--------HHHHHHHHHHhc-ccCeEEEEEeeCCCcC
Confidence 210 0011111111111 123334433332 3489999999999976
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHh-cccCCCCCeEEEeeCCCCCcc
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQH-GMIQKPDINVYQIASSVVNPL 405 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~-~~~~~~~~~vyn~~~~~~~~i 405 (554)
+........................ .. + ...+...+|+|++++.++... .. ...++++++.++ ..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~------p--~~r~~~pedvA~~v~~l~s~~~~~--~itG~~i~vdGG--~~~ 282 (297)
T 1xhl_A 216 GFMGAMGLPETASDKLYSFIGSRKE-CI------P--VGHCGKPEEIANIIVFLADRNLSS--YIIGQSIVADGG--STL 282 (297)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHCTT-TC------T--TSSCBCHHHHHHHHHHHHCHHHHT--TCCSCEEEESTT--GGG
T ss_pred ccccccccccccccchHHHHHHHHh-cC------C--CCCCcCHHHHHHHHHHHhCCcccC--CccCcEEEECCC--ccc
Confidence 4321100000000000000000000 00 1 124678999999999887653 21 223689999887 444
Q ss_pred cHHH
Q 042694 406 VFQD 409 (554)
Q Consensus 406 t~~e 409 (554)
.+.+
T Consensus 283 ~~~~ 286 (297)
T 1xhl_A 283 VMGM 286 (297)
T ss_dssp CCGG
T ss_pred cccc
Confidence 4444
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-14 Score=140.71 Aligned_cols=223 Identities=13% Similarity=0.061 Sum_probs=139.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|+++++ ...+.+.+..... ...++.++.+|++++ ++
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dv~d~------~~ 105 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAGA---NVAVAARSPRELSSVTAELGEL----GAGNVIGVRLDVSDP------GS 105 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSGGGGHHHHHHHTTS----SSSCEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhh----CCCcEEEEEEeCCCH------HH
Confidence 5789999999999999999999999886 4555432 3333443333220 125789999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHH----HcCCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAK----QCNKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+. + .+..++|++||......
T Consensus 106 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~iV~isS~~~~~~ 184 (293)
T 3rih_A 106 CADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTA-SGRGRVILTSSITGPVT 184 (293)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHH-HSSCEEEEECCSBTTTB
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCEEEEEeChhhccC
Confidence 666554 68999999997542 35678999999999999999884 3 35679999999754211
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
. .+....|...+... ..+++.++.+... .|+++..++||.|.++
T Consensus 185 ~---------------------------~~~~~~Y~asKaa~--------~~l~~~la~e~~~-~gI~vn~v~PG~v~t~ 228 (293)
T 3rih_A 185 G---------------------------YPGWSHYGASKAAQ--------LGFMRTAAIELAP-RGVTVNAILPGNILTE 228 (293)
T ss_dssp B---------------------------CTTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECSBCCH
T ss_pred C---------------------------CCCCHHHHHHHHHH--------HHHHHHHHHHHhh-hCeEEEEEecCCCcCc
Confidence 0 01111121111111 1234444443333 4899999999999875
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...... ..... ...... + .--+...+|++++++.++..... --.++++++.++
T Consensus 229 ~~~~~~---------~~~~~----~~~~~~---p--~~r~~~p~dvA~~v~fL~s~~a~--~itG~~i~vdGG 281 (293)
T 3rih_A 229 GLVDMG---------EEYIS----GMARSI---P--MGMLGSPVDIGHLAAFLATDEAG--YITGQAIVVDGG 281 (293)
T ss_dssp HHHHTC---------HHHHH----HHHTTS---T--TSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred chhhcc---------HHHHH----HHHhcC---C--CCCCCCHHHHHHHHHHHhCcccc--CCCCCEEEECCC
Confidence 321100 00000 000000 0 12245679999999888755332 234689999887
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-14 Score=139.71 Aligned_cols=226 Identities=12% Similarity=0.052 Sum_probs=142.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|+++++. ..+.+.+.... ...++.++.+|++++ ++
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 71 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREGA---KVVVTARNGNALAELTDEIAG-----GGGEAAALAGDVGDE------AL 71 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEECCSCHHHHHHHHHHHTT-----TTCCEEECCCCTTCH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEECCCCCH------HH
Confidence 5689999999999999999999999886 56665532 23333333221 245788999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||...+..
T Consensus 72 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 151 (280)
T 3tox_A 72 HEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA 151 (280)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC
Confidence 666654 79999999996521 3568899999999999999988642 23459999999765421
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. +....|...+..+ ..+++.++.+.. ..|+.+..++||.|..+
T Consensus 152 ~~---------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~-~~gIrvn~v~PG~v~T~ 195 (280)
T 3tox_A 152 GF---------------------------AGVAPYAASKAGL--------IGLVQALAVELG-ARGIRVNALLPGGTDTP 195 (280)
T ss_dssp CC---------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHH-TTTEEEEEEEECSBSST
T ss_pred CC---------------------------CCchhHHHHHHHH--------HHHHHHHHHHhh-hcCeEEEEEEECCCCCc
Confidence 00 1111122111111 123344443332 34899999999999764
Q ss_pred ccCC-ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEP-FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p-~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... .++.. ....... ........+..++|+|++++.++..... --.++++++.++
T Consensus 196 ~~~~~~~~~~------~~~~~~~---------~~~~p~~r~~~pedvA~~v~~L~s~~a~--~itG~~i~vdGG 252 (280)
T 3tox_A 196 ANFANLPGAA------PETRGFV---------EGLHALKRIARPEEIAEAALYLASDGAS--FVTGAALLADGG 252 (280)
T ss_dssp TSGGGSTTCC------THHHHHH---------HTTSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhhhhccccC------HHHHHHH---------hccCccCCCcCHHHHHHHHHHHhCcccc--CCcCcEEEECCC
Confidence 3211 11000 0000000 0011123467889999999988765332 234689999887
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-14 Score=138.81 Aligned_cols=227 Identities=11% Similarity=0.044 Sum_probs=138.0
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
..++|+|+||||+|+||++++++|++.|. +|++.+....+.+.+.... ......++.++.+|++++ ++.
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~~~------~~v 90 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGM---AVAVSHSERNDHVSTWLMH--ERDAGRDFKAYAVDVADF------ESC 90 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEECSCHHHHHHHHHH--HHTTTCCCEEEECCTTCH------HHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCchHHHHHHHHH--HHhcCCceEEEEecCCCH------HHH
Confidence 36789999999999999999999999876 4555442111222111100 001235789999999987 666
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||........
T Consensus 91 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 170 (269)
T 3gk3_A 91 ERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAF 170 (269)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCC
Confidence 66654 79999999997542 3567889999999999999887531 2456899999975533211
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
....|...+..+ ..+++.++.+... .|+++..++||.|..+..
T Consensus 171 ----------------------------~~~~Y~asKaa~--------~~~~~~la~e~~~-~gi~v~~v~PG~v~T~~~ 213 (269)
T 3gk3_A 171 ----------------------------GQANYASAKAGI--------HGFTKTLALETAK-RGITVNTVSPGYLATAMV 213 (269)
T ss_dssp ----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCTTT
T ss_pred ----------------------------CcchHHHHHHHH--------HHHHHHHHHHhhh-cCCEEEEEecCcccchhh
Confidence 111111111111 1234444444332 489999999999966433
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...+... .. ..... ......+..++|+|++++.++..... .-.++++++.++
T Consensus 214 ~~~~~~~---------~~---~~~~~-----~~~~~~~~~p~dvA~~v~~L~s~~~~--~itG~~i~vdgG 265 (269)
T 3gk3_A 214 EAVPQDV---------LE---AKILP-----QIPVGRLGRPDEVAALIAFLCSDDAG--FVTGADLAINGG 265 (269)
T ss_dssp TC-------------------CCSGG-----GCTTSSCBCHHHHHHHHHHHTSTTCT--TCCSCEEEESTT
T ss_pred hhhchhH---------HH---HHhhh-----cCCcCCccCHHHHHHHHHHHhCCCcC--CeeCcEEEECCC
Confidence 2211100 00 00000 00113456789999999887754321 234689999887
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-15 Score=144.92 Aligned_cols=245 Identities=12% Similarity=0.021 Sum_probs=144.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--------------hHHHHHHHcCCchhhhccCcEEEEEcc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--------------LFKCLKQTYGKSYQAFMLSKLVPAVGN 173 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--------------~~~~l~~~~~~~~~~~~~~kv~~v~GD 173 (554)
+++|+||||||+|+||++++++|++.|. +|++++.. ..+.+..... ....++.++.+|
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D 79 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGA---DIILFDICHDIETNEYPLATSRDLEEAGLEVE-----KTGRKAYTAEVD 79 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHH-----HTTSCEEEEECC
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC---eEEEEcccccccccccchhhhHHHHHHHHHHH-----hcCCceEEEEcc
Confidence 5789999999999999999999999886 45554321 1122222111 124588999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------CccEEEEcCCCCCc-----hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEe
Q 042694 174 VCENNLGLEEDLADVIAK-------EVDVIVNSAANTTF-----DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVS 240 (554)
Q Consensus 174 l~~~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vS 240 (554)
++++ ++.+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+-.++|++|
T Consensus 80 ~~~~------~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 80 VRDR------AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp TTCH------HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCCH------HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 9987 77666654 79999999998643 3678899999999999999999753 2345899999
Q ss_pred eceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEc
Q 042694 241 TAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIR 320 (554)
Q Consensus 241 T~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~R 320 (554)
|...+..... .+..+. ........|..+|... ..+++.++.+... .|+.+..++
T Consensus 154 S~~~~~~~~~----~~~~~~-------------------~~~~~~~~Y~asK~a~--~~~~~~la~e~~~-~gi~vn~v~ 207 (287)
T 3pxx_A 154 SVAGLIAAAQ----PPGAGG-------------------PQGPGGAGYSYAKQLV--DSYTLQLAAQLAP-QSIRANVIH 207 (287)
T ss_dssp CHHHHHHHHC----CC------------------------CHHHHHHHHHHHHHH--HHHHHHHHHHHGG-GTCEEEEEE
T ss_pred cchhcccccc----cccccc-------------------cCCCccchHHHHHHHH--HHHHHHHHHHHhh-cCcEEEEEe
Confidence 9876543210 000000 0001112222221100 1233344333322 489999999
Q ss_pred cceeeecccCCcccc---ccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEe
Q 042694 321 PSVIESTCKEPFSGW---MEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQI 397 (554)
Q Consensus 321 p~~V~g~~~~p~~g~---~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~ 397 (554)
||.|..+.....+.+ .... ..+.. ......++........+..++|+|++++.++..... --.+.++++
T Consensus 208 PG~v~T~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~--~itG~~i~v 279 (287)
T 3pxx_A 208 PTNVNTDMLNSAPMYRQFRPDL--EAPSR----ADALLAFPAMQAMPTPYVEASDISNAVCFLASDESR--YVTGLQFKV 279 (287)
T ss_dssp ESSBSSTTTSSHHHHHHHCTTS--SSCCH----HHHHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEE
T ss_pred cCccccccccccchhhhhcccc--ccchh----HHHHhhhhhhcccCCCCCCHHHHHhhHheecchhhc--CCCCceEeE
Confidence 999976543221110 0000 00000 000000000011114678899999999988754331 234689999
Q ss_pred eCC
Q 042694 398 ASS 400 (554)
Q Consensus 398 ~~~ 400 (554)
.++
T Consensus 280 dGG 282 (287)
T 3pxx_A 280 DAG 282 (287)
T ss_dssp STT
T ss_pred Cch
Confidence 887
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=141.20 Aligned_cols=232 Identities=14% Similarity=0.119 Sum_probs=141.2
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.+++|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+.... ...++.++.+|++++ +
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~ 73 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA---DLVLAARTVERLEDVAKQVTD-----TGRRALSVGTDITDD------A 73 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------H
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCH------H
Confidence 46789999999999999999999999886 45555432 22222222211 235789999999988 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~~ 247 (554)
+.+.+.+ .+|++||+|+... + .+.++..+++|+.|+..+++.+... ++-.++|++||......
T Consensus 74 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 153 (264)
T 3ucx_A 74 QVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHS 153 (264)
T ss_dssp HHHHHHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGCC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhccC
Confidence 7666654 7899999998742 1 2567889999999999999887542 11259999999765432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
. +....|...+..+ ..+++.++.+.. ..|+++..++||.|.++
T Consensus 154 ~----------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~-~~gi~vn~v~PG~v~t~ 196 (264)
T 3ucx_A 154 Q----------------------------AKYGAYKMAKSAL--------LAMSQTLATELG-EKGIRVNSVLPGYIWGG 196 (264)
T ss_dssp C----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHH-TTTCEEEEEEESSCBSH
T ss_pred C----------------------------CccHHHHHHHHHH--------HHHHHHHHHHhC-ccCeEEEEEecCccccc
Confidence 1 1111121111111 123344443332 35899999999999765
Q ss_pred ccCCccccc-cCCC-CccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWM-EGNR-MMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~-~~~~-~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
......... .... ......... .+..-...+..++|+|++++.++..... .-.++++++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~p~~r~~~p~dvA~~v~~L~s~~~~--~itG~~i~vdGG 260 (264)
T 3ucx_A 197 TLKSYFEHQAGKYGTSVEDIYNAA---------AAGSDLKRLPTEDEVASAILFMASDLAS--GITGQALDVNCG 260 (264)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH---------HTTSSSSSCCBHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHH---------hccCCcccCCCHHHHHHHHHHHcCcccc--CCCCCEEEECCC
Confidence 321110000 0000 000000000 0111123577899999999888765332 234689999877
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=140.93 Aligned_cols=226 Identities=11% Similarity=0.043 Sum_probs=140.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|+++++. ..+.+.+. ...++..+.+|++++ ++
T Consensus 27 l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dv~d~------~~ 89 (277)
T 3gvc_A 27 LAGKVAIVTGAGAGIGLAVARRLADEGC---HVLCADIDGDAADAAATK--------IGCGAAACRVDVSDE------QQ 89 (277)
T ss_dssp CTTCEEEETTTTSTHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHH--------HCSSCEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHH--------cCCcceEEEecCCCH------HH
Confidence 6789999999999999999999999886 55655432 22222222 234778899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||.......
T Consensus 90 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~ 169 (277)
T 3gvc_A 90 IIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAV 169 (277)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC
Confidence 666554 78999999997543 3568899999999999999888542 345689999997553321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
+....|...+... ..+++.++.+.. ..|+++.+++||.|.++.
T Consensus 170 ----------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~-~~gI~vn~v~PG~v~t~~ 212 (277)
T 3gvc_A 170 ----------------------------GGTGAYGMSKAGI--------IQLSRITAAELR-SSGIRSNTLLPAFVDTPM 212 (277)
T ss_dssp ----------------------------TTBHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBCCHH
T ss_pred ----------------------------CCchhHHHHHHHH--------HHHHHHHHHHhc-ccCeEEEEEeeCCccCch
Confidence 1111121111111 123444443333 248999999999997753
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
......... ............ .. ....+..++|+|++++.++..... --.++++++.++
T Consensus 213 ~~~~~~~~~-----~~~~~~~~~~~~-~~-----~~~r~~~pedvA~~v~~L~s~~a~--~itG~~i~vdGG 271 (277)
T 3gvc_A 213 QQTAMAMFD-----GALGAGGARSMI-AR-----LQGRMAAPEEMAGIVVFLLSDDAS--MITGTTQIADGG 271 (277)
T ss_dssp HHHHHTCC-----------CCHHHHH-HH-----HHSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred HHHhhhcch-----hhHHHHhhhhhh-hc-----cccCCCCHHHHHHHHHHHcCCccC--CccCcEEEECCc
Confidence 211000000 000000000000 00 012467899999999988765332 234689999887
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=140.51 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=130.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|+|+||||+|+||+++++.|++.|. +|++++. +..+.+.+.... ...++.++.+|++++ +
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~------~ 92 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGF---DIAITGIGDAEGVAPVIAELSG-----LGARVIFLRADLADL------S 92 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCCHHHHHHHHHHHHH-----TTCCEEEEECCTTSG------G
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCC---eEEEEeCCCHHHHHHHHHHHHh-----cCCcEEEEEecCCCH------H
Confidence 5688999999999999999999999886 4555432 222222222211 235789999999998 6
Q ss_pred HHHHHhc-------CccEEEEcCCCCC---------chhhHHHHHHHhchHHHHHHHHHHHc---CC---CceEEEEeec
Q 042694 185 LADVIAK-------EVDVIVNSAANTT---------FDERYDIAIDINTRGPCRLMEFAKQC---NK---LKLFVQVSTA 242 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~---------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~---~k~~v~vST~ 242 (554)
+.+.+.+ .+|++||+||... -.+.++..+++|+.|+..+++.+... .+ ..++|++||.
T Consensus 93 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~ 172 (280)
T 4da9_A 93 SHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSV 172 (280)
T ss_dssp GHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcch
Confidence 6666654 7999999999732 13567889999999999999887642 11 4589999997
Q ss_pred eecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccc
Q 042694 243 YVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPS 322 (554)
Q Consensus 243 ~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~ 322 (554)
....... ....|...+... ..+++.++.+.. ..|+++..++||
T Consensus 173 ~~~~~~~----------------------------~~~~Y~asKaa~--------~~l~~~la~e~~-~~gI~vn~v~PG 215 (280)
T 4da9_A 173 SAVMTSP----------------------------ERLDYCMSKAGL--------AAFSQGLALRLA-ETGIAVFEVRPG 215 (280)
T ss_dssp -----------------------------------CCHHHHHHHHHH--------HHHHHHHHHHHT-TTTEEEEEEEEC
T ss_pred hhccCCC----------------------------CccHHHHHHHHH--------HHHHHHHHHHHH-HhCcEEEEEeec
Confidence 6543211 011111111111 123344443332 358999999999
Q ss_pred eeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 323 VIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 323 ~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.|..+......... ......+..+ ...+..++|+|++++.++..... --.++++++.++
T Consensus 216 ~v~T~~~~~~~~~~---------~~~~~~~~~p--------~~r~~~pedvA~~v~~L~s~~~~--~itG~~i~vdGG 274 (280)
T 4da9_A 216 IIRSDMTAAVSGKY---------DGLIESGLVP--------MRRWGEPEDIGNIVAGLAGGQFG--FATGSVIQADGG 274 (280)
T ss_dssp CBCC---------------------------------------CCBCHHHHHHHHHHHHTSTTG--GGTTCEEEESTT
T ss_pred CCcCCchhhcchhH---------HHHHhhcCCC--------cCCcCCHHHHHHHHHHHhCcccc--CCCCCEEEECCC
Confidence 99764332211100 0000011111 12466789999999888764321 123689999876
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=141.34 Aligned_cols=223 Identities=14% Similarity=0.099 Sum_probs=140.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|+||||+|+||++++++|++.|. +|++.+.. ..+.+.+.... ...++.++.+|++++ +
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~------~ 110 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGA---NIAIAYLDEEGDANETKQYVEK-----EGVKCVLLPGDLSDE------Q 110 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHHT-----TTCCEEEEESCTTSH------H
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCchHHHHHHHHHHHh-----cCCcEEEEECCCCCH------H
Confidence 5789999999999999999999999886 44544322 12222222111 245789999999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~ 248 (554)
+.+.+++ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||...+...
T Consensus 111 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~ 190 (291)
T 3ijr_A 111 HCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGN 190 (291)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCC
Confidence 6666654 79999999996531 3567899999999999999999753 234589999998664331
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. ....|...+... ..+++.++.+... .|+.+..++||.|.++.
T Consensus 191 ~----------------------------~~~~Y~asKaa~--------~~l~~~la~e~~~-~gi~vn~v~PG~v~T~~ 233 (291)
T 3ijr_A 191 E----------------------------TLIDYSATKGAI--------VAFTRSLSQSLVQ-KGIRVNGVAPGPIWTPL 233 (291)
T ss_dssp T----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECSBCSTH
T ss_pred C----------------------------CChhHHHHHHHH--------HHHHHHHHHHHhh-cCEEEEEEeeCCCcCCc
Confidence 1 111121111111 1233444433333 48999999999997643
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. ...+ ......+. ...-...+..++|+|++++.++..... .-.++++++.++
T Consensus 234 ~~---~~~~-----~~~~~~~~---------~~~p~~r~~~p~dvA~~v~~L~s~~~~--~itG~~i~vdGG 286 (291)
T 3ijr_A 234 IP---SSFD-----EKKVSQFG---------SNVPMQRPGQPYELAPAYVYLASSDSS--YVTGQMIHVNGG 286 (291)
T ss_dssp HH---HHSC-----HHHHHHTT---------TTSTTSSCBCGGGTHHHHHHHHSGGGT--TCCSCEEEESSS
T ss_pred cc---ccCC-----HHHHHHHH---------ccCCCCCCcCHHHHHHHHHHHhCCccC--CCcCCEEEECCC
Confidence 21 0000 00000000 011123466789999999888765332 234689998876
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-14 Score=138.92 Aligned_cols=232 Identities=12% Similarity=0.044 Sum_probs=136.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... .....++.++.+|++++ ++
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~------~~ 78 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGA---KLSLVDVSSEGLEASKAAVLE---TAPDAEVLTTVADVSDE------AQ 78 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH---HCTTCCEEEEECCTTSH------HH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh---hcCCceEEEEEccCCCH------HH
Confidence 5789999999999999999999999876 45555432 12222221110 00134788999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||......
T Consensus 79 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 158 (267)
T 1iy8_A 79 VEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRG 158 (267)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSB
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccC
Confidence 666654 78999999997543 2567889999999988776665321 24679999999865432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
. +....|...+... ..+++.++.+.. ..|+++.+++||.|.++
T Consensus 159 ~----------------------------~~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~t~ 201 (267)
T 1iy8_A 159 I----------------------------GNQSGYAAAKHGV--------VGLTRNSAVEYG-RYGIRINAIAPGAIWTP 201 (267)
T ss_dssp C----------------------------SSBHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEECSBCSH
T ss_pred C----------------------------CCCccHHHHHHHH--------HHHHHHHHHHHH-hcCeEEEEEEeCCCcCc
Confidence 1 1111111111111 123344443332 24899999999999764
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...... ................. .. + ...+...+|+|++++.++..... ...++++++.++
T Consensus 202 ~~~~~~-~~~~~~~~~~~~~~~~~-~~------p--~~r~~~~~dvA~~v~~l~s~~~~--~~tG~~i~vdGG 262 (267)
T 1iy8_A 202 MVENSM-KQLDPENPRKAAEEFIQ-VN------P--SKRYGEAPEIAAVVAFLLSDDAS--YVNATVVPIDGG 262 (267)
T ss_dssp HHHHHH-HHHCTTCHHHHHHHHHT-TC------T--TCSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred chhccc-cccChhhhhhHHHHHhc-cC------C--CCCCcCHHHHHHHHHHHcCcccc--CCCCCEEEECCC
Confidence 321000 00000000000000000 00 1 12467889999999887754321 224678988876
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=141.00 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=140.5
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.+++|+|+||||+|+||++++++|++.|. +|+++++. ..+.+.+.... ...++..+.+|++++ +
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~------~ 90 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGA---MVIGTATTEAGAEGIGAAFKQ-----AGLEGRGAVLNVNDA------T 90 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHHH-----HTCCCEEEECCTTCH------H
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEEeCCCH------H
Confidence 36789999999999999999999999886 45555432 22222222211 234678899999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
+.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||......
T Consensus 91 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 170 (270)
T 3ftp_A 91 AVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAG 170 (270)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCC
Confidence 7666655 79999999997542 3568889999999999999988531 23468999999765432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+..+ ..+++.++.+... .|+++.+++||.|..+
T Consensus 171 ~~----------------------------~~~~Y~asKaa~--------~~l~~~la~e~~~-~gI~vn~v~PG~v~T~ 213 (270)
T 3ftp_A 171 NP----------------------------GQVNYAAAKAGV--------AGMTRALAREIGS-RGITVNCVAPGFIDTD 213 (270)
T ss_dssp CT----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCSH
T ss_pred CC----------------------------CchhHHHHHHHH--------HHHHHHHHHHHhh-hCeEEEEEEeCCCcCc
Confidence 11 111111111111 1244455444433 4899999999998654
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.....+.. ...... ...-...+..++|+|++++.++..... .-.++++++.++
T Consensus 214 ~~~~~~~~---------~~~~~~---------~~~p~~r~~~pedvA~~v~~L~s~~~~--~itG~~i~vdGG 266 (270)
T 3ftp_A 214 MTKGLPQE---------QQTALK---------TQIPLGRLGSPEDIAHAVAFLASPQAG--YITGTTLHVNGG 266 (270)
T ss_dssp HHHHSCHH---------HHHHHH---------TTCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred chhhcCHH---------HHHHHH---------hcCCCCCCCCHHHHHHHHHHHhCCCcC--CccCcEEEECCC
Confidence 32111100 000000 011113467889999999888754321 234689999877
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-14 Score=139.51 Aligned_cols=225 Identities=14% Similarity=0.116 Sum_probs=140.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|++++.. ..+.+.+. ...++..+.+|++++ ++
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dv~d~------~~ 87 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNGA---YVVVADVNEDAAVRVANE--------IGSKAFGVRVDVSSA------KD 87 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHH--------HCTTEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHH--------hCCceEEEEecCCCH------HH
Confidence 5689999999999999999999999886 45555432 22222222 235788999999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||...+...
T Consensus 88 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 167 (277)
T 4dqx_A 88 AESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAI 167 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCC
Confidence 666655 79999999996532 3567889999999999999888542 234599999997654321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. ....|...+... ..+++.++.+... .|+.+..++||.|..+.
T Consensus 168 ~----------------------------~~~~Y~asKaa~--------~~l~~~la~e~~~-~gi~vn~v~PG~v~T~~ 210 (277)
T 4dqx_A 168 A----------------------------DRTAYVASKGAI--------SSLTRAMAMDHAK-EGIRVNAVAPGTIDSPY 210 (277)
T ss_dssp T----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCHH
T ss_pred C----------------------------CChhHHHHHHHH--------HHHHHHHHHHhhh-cCeEEEEEeeCcCcCch
Confidence 1 111121111111 1234444443332 48999999999996543
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. ................ ........+..++|+|++++.++..... -..++++++.++
T Consensus 211 ~~---~~~~~~~~~~~~~~~~---------~~~~~~~r~~~pedvA~~v~~L~s~~~~--~itG~~i~vdGG 268 (277)
T 4dqx_A 211 FT---KIFAEAKDPAKLRSDF---------NARAVMDRMGTAEEIAEAMLFLASDRSR--FATGSILTVDGG 268 (277)
T ss_dssp HH---HHHHTCSCHHHHHHHH---------HTTSTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESSS
T ss_pred hh---hhcccccchhHHHHHH---------HhcCcccCCcCHHHHHHHHHHHhCCccC--CCcCCEEEECCc
Confidence 10 0000000000000000 0111123467899999999988765432 234689999887
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-13 Score=134.97 Aligned_cols=233 Identities=13% Similarity=0.048 Sum_probs=138.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||+|+||++++++|++.|. +|+++++ ...+.+.+.... ...++.++.+|++++ ++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~------~~ 91 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGV---TVGALGRTRTEVEEVADEIVG-----AGGQAIALEADVSDE------LQ 91 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHTT-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 4678999999999999999999999886 4555543 223333333221 235788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++++... .+..++|++||......
T Consensus 92 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~ 171 (283)
T 3v8b_A 92 MRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRT 171 (283)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccC
Confidence 666654 79999999997432 3467889999999999999988321 35579999999755321
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. .+....|...+..+ ..+++.++.+.. ..|+.+..++||.|..+
T Consensus 172 ~~--------------------------~~~~~~Y~asKaa~--------~~l~~~la~e~~-~~gI~vn~v~PG~v~T~ 216 (283)
T 3v8b_A 172 FT--------------------------TPGATAYTATKAAQ--------VAIVQQLALELG-KHHIRVNAVCPGAIETN 216 (283)
T ss_dssp CC--------------------------STTCHHHHHHHHHH--------HHHHHHHHHHTT-TTTEEEEEEEECSBSSC
T ss_pred CC--------------------------CCCchHHHHHHHHH--------HHHHHHHHHHhC-ccCcEEEEEEeCCCcCC
Confidence 10 01111121111111 123344443332 34899999999999654
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.......... ...........+..+ -..-.+...+|+|++++.++..... --.++++++.++
T Consensus 217 ~~~~~~~~~~---~~~~~~~~~~~~~~p------~~~~r~~~pedvA~~v~fL~s~~a~--~itG~~i~vdGG 278 (283)
T 3v8b_A 217 ISDNTKLRHE---EETAIPVEWPKGQVP------ITDGQPGRSEDVAELIRFLVSERAR--HVTGSPVWIDGG 278 (283)
T ss_dssp TTCCTTBCCH---HHHSCCCBCTTCSCG------GGTTCCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred cccccccccc---hhhhhhhhhhhhcCc------cccCCCCCHHHHHHHHHHHcCcccc--CCcCCEEEECcC
Confidence 3321100000 000000000000000 0002345679999999887754332 234688888776
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=141.99 Aligned_cols=233 Identities=15% Similarity=0.175 Sum_probs=139.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+...... ...++.++.+|++++ ++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~D~~~~------~~ 72 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGA---KVALVDWNLEAGVQCKAALHEQF---EPQKTLFIQCDVADQ------QQ 72 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTTTS---CGGGEEEEECCTTSH------HH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhhc---CCCceEEEecCCCCH------HH
Confidence 4678999999999999999999999886 45555432 2222222221100 124688999999987 76
Q ss_pred HHHHhc-------CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHH----HcC--CCceEEEEeeceeccccccee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAK----QCN--KLKLFVQVSTAYVNGQRRGKV 252 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~----~~~--~~k~~v~vST~~v~~~~~~~i 252 (554)
.+.+.+ .+|+|||+||... .+.++..+++|+.|+..+.+.+. +.+ +..++|++||...+....
T Consensus 73 v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--- 148 (267)
T 2gdz_A 73 LRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVA--- 148 (267)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT---
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC-hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCC---
Confidence 666654 5799999999754 45678889999997766655543 211 157899999987654311
Q ss_pred eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhh-----hhhcCCCcEEEEccceeeec
Q 042694 253 MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGL-----GLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 253 ~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~-----~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ..|. .+|...+.+.+. -....|+++.+++||.|.++
T Consensus 149 -------------------------~~------~~Y~------~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~ 191 (267)
T 2gdz_A 149 -------------------------QQ------PVYC------ASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTA 191 (267)
T ss_dssp -------------------------TC------HHHH------HHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSH
T ss_pred -------------------------CC------chHH------HHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcch
Confidence 00 1111 223222333222 11245899999999999654
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccH
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVF 407 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~ 407 (554)
........ .. .... ..... .+ ..+.....+++++|+|++++.++..... .++++++.++ .++++
T Consensus 192 ~~~~~~~~-~~---~~~~-~~~~~-~~----~~~~~~~~~~~~~dvA~~v~~l~s~~~~----~G~~~~v~gg--~~~~~ 255 (267)
T 2gdz_A 192 ILESIEKE-EN---MGQY-IEYKD-HI----KDMIKYYGILDPPLIANGLITLIEDDAL----NGAIMKITTS--KGIHF 255 (267)
T ss_dssp HHHGGGCH-HH---HGGG-GGGHH-HH----HHHHHHHCCBCHHHHHHHHHHHHHCTTC----SSCEEEEETT--TEEEE
T ss_pred hhhccccc-cc---cchh-hhHHH-HH----HHHhccccCCCHHHHHHHHHHHhcCcCC----CCcEEEecCC--Ccccc
Confidence 22110000 00 0000 00000 00 0000113467899999999988865432 3689999987 56665
Q ss_pred HH
Q 042694 408 QD 409 (554)
Q Consensus 408 ~e 409 (554)
.|
T Consensus 256 ~~ 257 (267)
T 2gdz_A 256 QD 257 (267)
T ss_dssp CC
T ss_pred cC
Confidence 44
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=141.40 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=96.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||||+||++++++|++.|. +|++.++.. +++.+.... ...++.++.+|++++ +..+
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G~---~V~~~~r~~-~~~~~~~~~-----~~~~~~~~~~Dl~d~------~~v~ 78 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRGA---TVIMAVRDT-RKGEAAART-----MAGQVEVRELDLQDL------SSVR 78 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTTC---EEEEEESCH-HHHHHHHTT-----SSSEEEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEECCH-HHHHHHHHH-----hcCCeeEEEcCCCCH------HHHH
Confidence 5789999999999999999999999876 456554321 222222211 245789999999988 8888
Q ss_pred HHhc---CccEEEEcCCCCCc-----hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccc
Q 042694 188 VIAK---EVDVIVNSAANTTF-----DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 188 ~l~~---~vdiViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~ 247 (554)
.+.+ ++|++||+||.... .+.++..+++|+.|+..+++++... ..+++|++||...+..
T Consensus 79 ~~~~~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-~~~riv~isS~~~~~~ 145 (291)
T 3rd5_A 79 RFADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPR-LTDRVVTVSSMAHWPG 145 (291)
T ss_dssp HHHHTCCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGG-EEEEEEEECCGGGTTC
T ss_pred HHHHhcCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhheeEeechhhccC
Confidence 8876 67999999997542 3567789999999999999999874 4569999999876543
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-14 Score=138.71 Aligned_cols=234 Identities=16% Similarity=0.127 Sum_probs=137.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|+++++. ..+.+.+..... .....++.++.+|++++ ++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dv~~~------~~ 72 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGA---NVTITGRSSERLEETRQIILKS--GVSEKQVNSVVADVTTE------DG 72 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTT--TCCGGGEEEEECCTTSH------HH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHc--CCCCcceEEEEecCCCH------HH
Confidence 4678999999999999999999999876 45555432 222222221110 00012788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+.++++.+... .+ .++|++||...
T Consensus 73 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~ 151 (280)
T 1xkq_A 73 QDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVA 151 (280)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGG
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccc
Confidence 666554 79999999996532 2457889999999999999988642 13 69999999865
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcccee
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
+.... +....|...+... ..+++.++.+.. ..|+++.+++||.|
T Consensus 152 ~~~~~---------------------------~~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~PG~v 195 (280)
T 1xkq_A 152 GPQAQ---------------------------PDFLYYAIAKAAL--------DQYTRSTAIDLA-KFGIRVNSVSPGMV 195 (280)
T ss_dssp SSSCC---------------------------CSSHHHHHHHHHH--------HHHHHHHHHHHH-TTTCEEEEEEECCB
T ss_pred cCCCC---------------------------CcccHHHHHHHHH--------HHHHHHHHHHhc-cCCeEEEEEeeCcC
Confidence 43210 0111111111111 123333333322 35899999999999
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHh-cccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQH-GMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~-~~~~~~~~~vyn~~~~ 400 (554)
.++........................ .. + ...+..++|+|++++.++... .. ...++++++.++
T Consensus 196 ~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~------p--~~~~~~pedvA~~v~~l~s~~~~~--~~tG~~i~vdgG 261 (280)
T 1xkq_A 196 ETGFTNAMGMPDQASQKFYNFMASHKE-CI------P--IGAAGKPEHIANIILFLADRNLSF--YILGQSIVADGG 261 (280)
T ss_dssp CSSHHHHTTCCHHHHHHHHHHHHHCTT-TC------T--TSSCBCHHHHHHHHHHHHCHHHHT--TCCSCEEEESTT
T ss_pred cCCcccccccccccccchHHHHHHHHc-CC------C--CCCCCCHHHHHHHHHHhcCccccc--CccCCeEEECCC
Confidence 765321100000000000000000000 00 1 124778999999998887553 21 123679998877
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=140.94 Aligned_cols=219 Identities=14% Similarity=0.035 Sum_probs=134.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||+|+||++++++|++.+. +|+++++ ...+.+.+.... ...++..+.+|++++ ++
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~~ 97 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAGA---DVAIWYNSHPADEKAEHLQKT-----YGVHSKAYKCNISDP------KS 97 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHTC---EEEEEESSSCCHHHHHHHHHH-----HCSCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcceEEEeecCCH------HH
Confidence 5689999999999999999999999886 4555432 222233222110 234788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc---------hhhHHHHHHHhchH----HHHHHHHHHHcCCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF---------DERYDIAIDINTRG----PCRLMEFAKQCNKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~---------~~~~~~~~~~Nv~g----t~~ll~la~~~~~~k~~v~vST~~v~ 245 (554)
++.+.+ .+|+|||+||.... .+.++..+++|+.| ++.+++.+++ .+..++|++||...+
T Consensus 98 ~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~~~iv~isS~~~~ 176 (279)
T 3ctm_A 98 VEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKK-NGKGSLIITSSISGK 176 (279)
T ss_dssp HHHHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCCEEEEECCCTTS
T ss_pred HHHHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCeEEEECchHhc
Confidence 666654 49999999986533 23567889999999 5677777766 367899999997653
Q ss_pred ccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---hcCCCcEEEEccc
Q 042694 246 GQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---ERGDIPVVIIRPS 322 (554)
Q Consensus 246 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~~~glp~~I~Rp~ 322 (554)
.... . +.. .. |..+|...+.+.+... ...+ .+.+++||
T Consensus 177 ~~~~-------~-------------------~~~------~~------Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg 217 (279)
T 3ctm_A 177 IVNI-------P-------------------QLQ------AP------YNTAKAACTHLAKSLAIEWAPFA-RVNTISPG 217 (279)
T ss_dssp CC-----------------------------CCH------HH------HHHHHHHHHHHHHHHHHHTTTTC-EEEEEEEC
T ss_pred cCCC-------C-------------------CCc------cc------HHHHHHHHHHHHHHHHHHhcccC-CEEEEecc
Confidence 2200 0 000 11 2222333333333222 1246 99999999
Q ss_pred eeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 323 VIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 323 ~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.|..+.....+ ........ ... + ...+++++|+|++++.++..... ...++++++.++
T Consensus 218 ~v~t~~~~~~~---------~~~~~~~~-~~~------p--~~~~~~~~dvA~~~~~l~s~~~~--~~tG~~i~vdgG 275 (279)
T 3ctm_A 218 YIDTDITDFAS---------KDMKAKWW-QLT------P--LGREGLTQELVGGYLYLASNAST--FTTGSDVVIDGG 275 (279)
T ss_dssp SBSSTTTSSCC---------HHHHHHHH-HHS------T--TCSCBCGGGTHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred CCccccccccC---------hHHHHHHH-HhC------C--ccCCcCHHHHHHHHHHHhCcccc--CccCCEEEECCC
Confidence 98654321100 00000000 000 1 12478899999999988765321 234678998876
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=133.38 Aligned_cols=223 Identities=14% Similarity=0.169 Sum_probs=129.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||||+||++++++|++.|. +|+++++..- .. ...+..+.+|++++ ++.+
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~~------~~-------~~~~~~~~~D~~d~------~~~~ 62 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGA---KVTGFDQAFT------QE-------QYPFATEVMDVADA------AQVA 62 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCCC------SS-------CCSSEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCchh------hh-------cCCceEEEcCCCCH------HHHH
Confidence 4678999999999999999999999886 4555543210 00 01267899999987 7777
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ ++|++||+|+.... .+.++..+++|+.|+.++++.+... .+..++|++||...+...
T Consensus 63 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~-- 140 (250)
T 2fwm_X 63 QVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPR-- 140 (250)
T ss_dssp HHHHHHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC--
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC--
Confidence 6665 79999999997542 3568899999999999999988321 246799999998664321
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
+....|...+... ..+++.++.+.. ..|+++.++|||.|.++...
T Consensus 141 --------------------------~~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~~~ 185 (250)
T 2fwm_X 141 --------------------------IGMSAYGASKAAL--------KSLALSVGLELA-GSGVRCNVVSPGSTDTDMQR 185 (250)
T ss_dssp --------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEECCC------
T ss_pred --------------------------CCCchHHHHHHHH--------HHHHHHHHHHhC-ccCCEEEEEECCcccCcccc
Confidence 1111111111111 123333333322 34899999999999875432
Q ss_pred CccccccCCCCcc-ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMD-PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~-~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
... ... .... . +........... + ...+...+|+|++++.++..... ...++++++.++
T Consensus 186 ~~~--~~~-~~~~~~-~~~~~~~~~~~~---p--~~~~~~p~dvA~~v~~l~s~~~~--~~tG~~i~vdGG 245 (250)
T 2fwm_X 186 TLW--VSD-DAEEQR-IRGFGEQFKLGI---P--LGKIARPQEIANTILFLASDLAS--HITLQDIVVDGG 245 (250)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred ccc--cCh-hHHHHH-HhhhhhcccccC---C--CCCCcCHHHHHHHHHHHhCcccc--CCCCCEEEECCC
Confidence 110 000 0000 0 000000000000 1 12367889999999988765321 234678888776
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=141.26 Aligned_cols=234 Identities=11% Similarity=0.048 Sum_probs=138.4
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
..++|+||||||+|+||++++++|++.|. +|++.++. ..+.+.+.... ...++..+.+|++++ +
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~------~ 86 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGI---AVYGCARDAKNVSAAVDGLRA-----AGHDVDGSSCDVTST------D 86 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHT-----TTCCEEEEECCTTCH------H
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEECCCCCH------H
Confidence 45789999999999999999999999886 45555432 22222222211 235789999999987 6
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH---c--CCCceEEEEeeceec
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ---C--NKLKLFVQVSTAYVN 245 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~---~--~~~k~~v~vST~~v~ 245 (554)
+.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+.. + .+..++|++||....
T Consensus 87 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~ 166 (279)
T 3sju_A 87 EVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGK 166 (279)
T ss_dssp HHHHHHHHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhc
Confidence 6666554 78999999997542 346788899999999999998865 1 244699999997654
Q ss_pred ccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 246 GQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 246 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
.... ....|...+..+ ..+++.++.+... .|+++..++||.|.
T Consensus 167 ~~~~----------------------------~~~~Y~asKaa~--------~~l~~~la~e~~~-~gi~vn~v~PG~v~ 209 (279)
T 3sju_A 167 QGVM----------------------------YAAPYTASKHGV--------VGFTKSVGFELAK-TGITVNAVCPGYVE 209 (279)
T ss_dssp SCCT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHTGG-GTEEEEEEEESSBC
T ss_pred cCCC----------------------------CChhHHHHHHHH--------HHHHHHHHHHHHh-hCcEEEEEeeCccc
Confidence 3211 111121111111 1244444444333 48999999999996
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
++..... ........... .......+ ....-...+..++|+|++++.++..... --.++++++.++
T Consensus 210 T~~~~~~---~~~~~~~~~~~---~~~~~~~~-~~~~p~~r~~~pedvA~~v~~L~s~~a~--~itG~~i~vdGG 275 (279)
T 3sju_A 210 TPMAERV---REGYARHWGVT---EQEVHERF-NAKIPLGRYSTPEEVAGLVGYLVTDAAA--SITAQALNVCGG 275 (279)
T ss_dssp SHHHHHH---HHSCCSSSCCC---HHHHHHHH-HTTCTTSSCBCHHHHHHHHHHHTSSGGG--GCCSCEEEESTT
T ss_pred chHHHHH---HhhhhhcccCC---hHHHHHHH-HhcCCCCCCCCHHHHHHHHHHHhCcccc--CcCCcEEEECCC
Confidence 6432110 00000000000 00000000 0111123467899999999887754321 124689998876
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=141.91 Aligned_cols=224 Identities=13% Similarity=0.091 Sum_probs=140.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.++... ...++.++.+|++++ ++
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~------~~ 89 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAGA---RILINGTDPSRVAQTVQEFRN-----VGHDAEAVAFDVTSE------SE 89 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEECCSCHHHHHHHHHHHHH-----TTCCEEECCCCTTCH------HH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEcCCCCH------HH
Confidence 5789999999999999999999999886 56665432 22222222211 235788999999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||.......
T Consensus 90 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~ 169 (271)
T 4ibo_A 90 IIEAFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELAR 169 (271)
T ss_dssp HHHHHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCC
Confidence 766665 79999999997532 3567889999999999998887542 244689999997543221
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
+....|...+..+ ..+++.++.+.. ..|+++..++||.|..+.
T Consensus 170 ----------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~-~~gI~vn~v~PG~v~T~~ 212 (271)
T 4ibo_A 170 ----------------------------ATVAPYTVAKGGI--------KMLTRAMAAEWA-QYGIQANAIGPGYMLTDM 212 (271)
T ss_dssp ----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBCSGG
T ss_pred ----------------------------CCchhHHHHHHHH--------HHHHHHHHHHHh-hhCeEEEEEEeccEeCcc
Confidence 1111122112111 123444444333 248999999999997643
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
... +.+. ......... .. + ...+..++|+|++++.++..... --.++++++.++
T Consensus 213 ~~~---~~~~----~~~~~~~~~-~~------p--~~r~~~pedva~~v~~L~s~~~~--~itG~~i~vdGG 266 (271)
T 4ibo_A 213 NQA---LIDN----PEFDAWVKA-RT------P--AKRWGKPQELVGTAVFLSASASD--YVNGQIIYVDGG 266 (271)
T ss_dssp GHH---HHHC----HHHHHHHHH-HS------T--TCSCBCGGGGHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhh---cccC----HHHHHHHHh-cC------C--CCCCcCHHHHHHHHHHHhCcccc--CCCCcEEEECCC
Confidence 211 1000 000000000 00 0 12356789999999887765331 234689999887
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-14 Score=136.69 Aligned_cols=226 Identities=12% Similarity=0.015 Sum_probs=136.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||||+||++++++|++.|. +|+++++.. +++.+.... ...++.++.+|++++ ++.+
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~-~~~~~~~~~-----~~~~~~~~~~D~~~~------~~v~ 68 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGA---KVAFSDINE-AAGQQLAAE-----LGERSMFVRHDVSSE------ADWT 68 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECSCH-HHHHHHHHH-----HCTTEEEECCCTTCH------HHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHHH-----cCCceEEEEccCCCH------HHHH
Confidence 4688999999999999999999999876 566665432 222221110 134788999999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. + .+ .++|++||...+....
T Consensus 69 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~- 146 (253)
T 1hxh_A 69 LVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIE- 146 (253)
T ss_dssp HHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCCT-
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCCC-
Confidence 6554 57999999997543 356788999999998877776543 1 24 7999999986643211
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc-CCCcEEEEccceeeeccc
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER-GDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~-~glp~~I~Rp~~V~g~~~ 329 (554)
....|...+... ..+++.++.+.... .|+++.++|||.|.++..
T Consensus 147 ---------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~ 191 (253)
T 1hxh_A 147 ---------------------------QYAGYSASKAAV--------SALTRAAALSCRKQGYAIRVNSIHPDGIYTPMM 191 (253)
T ss_dssp ---------------------------TBHHHHHHHHHH--------HHHHHHHHHHHHHHTCCEEEEEEEESEECCHHH
T ss_pred ---------------------------CCccHHHHHHHH--------HHHHHHHHHHhhhcCCCeEEEEEEeCCccCchh
Confidence 111111111111 11233333332222 289999999999987542
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. +... ......+ .... ... + ...+..++|+|++++.++..... ...++++++.++
T Consensus 192 ~~---~~~~-~~~~~~~---~~~~-~~~---p--~~~~~~~~dvA~~~~~l~s~~~~--~~tG~~~~vdgG 247 (253)
T 1hxh_A 192 QA---SLPK-GVSKEMV---LHDP-KLN---R--AGRAYMPERIAQLVLFLASDESS--VMSGSELHADNS 247 (253)
T ss_dssp HH---HSCT-TCCHHHH---BCBT-TTB---T--TCCEECHHHHHHHHHHHHSGGGT--TCCSCEEEESSS
T ss_pred hh---ccch-hhhHHHH---hhhh-ccC---c--cCCCCCHHHHHHHHHHHcCcccc--CCCCcEEEECCC
Confidence 11 0000 0000000 0000 000 1 12467889999999988765321 234678888776
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.1e-14 Score=136.83 Aligned_cols=124 Identities=16% Similarity=0.209 Sum_probs=91.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++||||||+|+||++++++|++.|. +|+++++. ..+.+.+.... ...++.++.+|++++ ++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~ 92 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLGA---RVVLTARDVEKLRAVEREIVA-----AGGEAESHACDLSHS------DA 92 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCEEEEEECCTTCH------HH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHH-----hCCceeEEEecCCCH------HH
Confidence 5689999999999999999999999876 45555432 22222222211 235788999999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
.+.+.+ .+|+|||+||... + .+.++..+++|+.|+..+++.+... .+..++|++||...+
T Consensus 93 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 170 (262)
T 3rkr_A 93 IAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGK 170 (262)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSS
T ss_pred HHHHHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhc
Confidence 666554 5999999999732 1 3467889999999999999887541 356799999997654
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.1e-14 Score=138.17 Aligned_cols=223 Identities=16% Similarity=0.109 Sum_probs=135.7
Q ss_pred ccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.++|+|+||||+ |+||++++++|++.|. +|+++++.. .+.+.+... ...++.++.+|++++
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~l~~------~~~~~~~~~~Dl~~~------ 83 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGA---QLAFTYATPKLEKRVREIAK------GFGSDLVVKCDVSLD------ 83 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTC---EEEEEESSGGGHHHHHHHHH------HTTCCCEEECCTTCH------
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHH------hcCCeEEEEcCCCCH------
Confidence 568999999999 9999999999999876 455553321 111211110 012367899999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHHcC--CCceEEEEeece
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQCN--KLKLFVQVSTAY 243 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~~--~~k~~v~vST~~ 243 (554)
+..+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+...- +-.++|++||..
T Consensus 84 ~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~ 163 (285)
T 2p91_A 84 EDIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYG 163 (285)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGG
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccch
Confidence 76666654 78999999997542 24678899999999999999997531 226999999975
Q ss_pred ecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccce
Q 042694 244 VNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 244 v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
..... +....|...+.... .+++.++.+.. ..|+++.+++||.
T Consensus 164 ~~~~~----------------------------~~~~~Y~~sK~a~~--------~~~~~la~e~~-~~gi~v~~v~PG~ 206 (285)
T 2p91_A 164 AEKVV----------------------------PHYNVMGIAKAALE--------STVRYLAYDIA-KHGHRINAISAGP 206 (285)
T ss_dssp GTSBC----------------------------TTTTHHHHHHHHHH--------HHHHHHHHHHH-TTTCEEEEEEECC
T ss_pred hccCC----------------------------CCccHHHHHHHHHH--------HHHHHHHHHhc-ccCcEEEEEEeCc
Confidence 53321 11111222121111 22333333322 3589999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|.++.....+.. ......... .. + ...+..++++|++++.++..... ...+.+|++.++
T Consensus 207 v~t~~~~~~~~~-------~~~~~~~~~-~~------p--~~~~~~~~dva~~~~~l~s~~~~--~~tG~~~~vdgg 265 (285)
T 2p91_A 207 VKTLAAYSITGF-------HLLMEHTTK-VN------P--FGKPITIEDVGDTAVFLCSDWAR--AITGEVVHVDNG 265 (285)
T ss_dssp CCCSCC--CTTH-------HHHHHHHHH-HS------T--TSSCCCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred ccCchhhcccch-------HHHHHHHHh-cC------C--CCCCcCHHHHHHHHHHHcCCccc--CCCCCEEEECCC
Confidence 977543211110 000000000 00 0 12356789999999888754321 224678998876
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-14 Score=136.28 Aligned_cols=217 Identities=13% Similarity=0.111 Sum_probs=135.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||||+||++++++|++.|. +|++++...- .+.+. ...++.++.+|++++ ++.+
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~-~~~~~--------~~~~~~~~~~D~~~~------~~v~ 68 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAGA---QVVVLDIRGE-DVVAD--------LGDRARFAAADVTDE------AAVA 68 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESSCH-HHHHH--------TCTTEEEEECCTTCH------HHHH
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCchH-HHHHh--------cCCceEEEECCCCCH------HHHH
Confidence 4689999999999999999999999986 4565554322 22222 235788999999987 7766
Q ss_pred HHhc------CccEEEEcCCCCC-----------chhhHHHHHHHhchHHHHHHHHHHHc-----------CCCceEEEE
Q 042694 188 VIAK------EVDVIVNSAANTT-----------FDERYDIAIDINTRGPCRLMEFAKQC-----------NKLKLFVQV 239 (554)
Q Consensus 188 ~l~~------~vdiViH~AA~v~-----------~~~~~~~~~~~Nv~gt~~ll~la~~~-----------~~~k~~v~v 239 (554)
.+.+ .+|++||+||... -.+.++..+++|+.|+..+++.+... .+-.++|++
T Consensus 69 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~i 148 (257)
T 3tl3_A 69 SALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINT 148 (257)
T ss_dssp HHHHHHHHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEE
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEE
Confidence 6665 8999999999742 23467899999999999999998753 123479999
Q ss_pred eeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEE
Q 042694 240 STAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVII 319 (554)
Q Consensus 240 ST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~ 319 (554)
||...+....+ ...|..+|... ..+++.++.+... .|+.+..+
T Consensus 149 sS~~~~~~~~~----------------------------------~~~Y~asKaa~--~~~~~~la~e~~~-~gI~vn~v 191 (257)
T 3tl3_A 149 ASVAAFDGQIG----------------------------------QAAYSASKGGV--VGMTLPIARDLAS-HRIRVMTI 191 (257)
T ss_dssp CCCC--CCHHH----------------------------------HHHHHHHHHHH--HHHHHHHHHHHGG-GTEEEEEE
T ss_pred cchhhcCCCCC----------------------------------CccHHHHHHHH--HHHHHHHHHHhcc-cCcEEEEE
Confidence 99765432110 01222221000 1244444444333 48999999
Q ss_pred ccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeC
Q 042694 320 RPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIAS 399 (554)
Q Consensus 320 Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~ 399 (554)
+||.|..+.....+. ........ ..+ ....+...+|++++++.++.... -.++++++.+
T Consensus 192 ~PG~v~T~~~~~~~~---------~~~~~~~~-~~~-------~~~r~~~p~dva~~v~~l~s~~~----itG~~i~vdG 250 (257)
T 3tl3_A 192 APGLFDTPLLASLPE---------EARASLGK-QVP-------HPSRLGNPDEYGALAVHIIENPM----LNGEVIRLDG 250 (257)
T ss_dssp EECSBCCTTC---CH---------HHHHHHHH-TSS-------SSCSCBCHHHHHHHHHHHHHCTT----CCSCEEEEST
T ss_pred EecCccChhhhhccH---------HHHHHHHh-cCC-------CCCCccCHHHHHHHHHHHhcCCC----CCCCEEEECC
Confidence 999986543211110 00000000 000 01246788999999998886533 2468999887
Q ss_pred C
Q 042694 400 S 400 (554)
Q Consensus 400 ~ 400 (554)
+
T Consensus 251 G 251 (257)
T 3tl3_A 251 A 251 (257)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=136.71 Aligned_cols=237 Identities=16% Similarity=0.129 Sum_probs=142.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-----------hHHHHHHHcCCchhhhccCcEEEEEccCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-----------LFKCLKQTYGKSYQAFMLSKLVPAVGNVCE 176 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-----------~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~ 176 (554)
+++|+||||||+|+||++++++|++.|.+ |++++.. ..+.+.+.... ......++.++.+|+++
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~ 85 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADGAD---IIAVDLCDQIASVPYPLATPEELAATVKL--VEDIGSRIVARQADVRD 85 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEECCSCCTTCSSCCCCHHHHHHHHHH--HHHHTCCEEEEECCTTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCe---EEEEecccccccccccccchHHHHHHHHH--HHhcCCeEEEEeCCCCC
Confidence 57899999999999999999999998864 5544321 01222211110 01124588999999998
Q ss_pred CCCCCCHHHHHHHhc-------CccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeec
Q 042694 177 NNLGLEEDLADVIAK-------EVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTA 242 (554)
Q Consensus 177 ~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~ 242 (554)
+ ++.+.+++ .+|++||+||.... .+.++..+++|+.|+..+++.+... ++-.++|++||.
T Consensus 86 ~------~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~ 159 (278)
T 3sx2_A 86 R------ESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSS 159 (278)
T ss_dssp H------HHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred H------HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccH
Confidence 8 77776665 79999999997643 4678899999999999999987542 124589999998
Q ss_pred eecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccc
Q 042694 243 YVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPS 322 (554)
Q Consensus 243 ~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~ 322 (554)
........ . .+ ....|..+|... ..+++.++.+.. ..|+++..++||
T Consensus 160 ~~~~~~~~-----------~-------------~~------~~~~Y~asKaa~--~~~~~~la~e~~-~~gi~vn~v~PG 206 (278)
T 3sx2_A 160 AGLAGVGS-----------A-------------DP------GSVGYVAAKHGV--VGLMRVYANLLA-GQMIRVNSIHPS 206 (278)
T ss_dssp GGTSCCCC-----------S-------------SH------HHHHHHHHHHHH--HHHHHHHHHHHG-GGTEEEEEEEES
T ss_pred HhcCCCcc-----------C-------------CC------CchHhHHHHHHH--HHHHHHHHHHHh-ccCcEEEEEecC
Confidence 65432100 0 00 011222221000 123444443333 348999999999
Q ss_pred eeeecccCCcc--ccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 323 VIESTCKEPFS--GWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 323 ~V~g~~~~p~~--g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.|.++...... .+... .. ..........+.. ...++.++|+|++++.++..... --.++++++.++
T Consensus 207 ~v~T~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~-p~~~~~p~dvA~~v~~l~s~~~~--~itG~~i~vdGG 274 (278)
T 3sx2_A 207 GVETPMINNEFTREWLAK----MA-----AATDTPGAMGNAM-PVEVLAPEDVANAVAWLVSDQAR--YITGVTLPVDAG 274 (278)
T ss_dssp CBSSTTTSSHHHHHHHHH----HH-----HHCC--CTTSCSS-SCSSBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred CccCccchhhhHHHHHhh----cc-----chhhhhhhhhhhc-CcCcCCHHHHHHHHHHHhCcccc--cccCCEEeECCC
Confidence 99765432100 01000 00 0000000000111 14678899999999888755331 234689998876
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=134.66 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=140.6
Q ss_pred ccCcEEEEeccccc--ccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATGF--LAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTGF--lG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+++|+|+||||+|+ ||++++++|++.|. +|+++++ ...+.+.+.... ....++.++.+|++++
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~D~~~~------ 71 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA---RLIFTYAGERLEKSVHELAGT----LDRNDSIILPCDVTND------ 71 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC---EEEEEESSGGGHHHHHHHHHT----SSSCCCEEEECCCSSS------
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC---EEEEecCchHHHHHHHHHHHh----cCCCCceEEeCCCCCH------
Confidence 46899999999999 99999999999886 4555432 222223222111 0123789999999998
Q ss_pred HHHHHHhc-------CccEEEEcCCCCC-------c----hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeecee
Q 042694 184 DLADVIAK-------EVDVIVNSAANTT-------F----DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v 244 (554)
++.+.+.+ .+|++||+|+... + .+.+...+++|+.|+..+++.+... .+-.++|++||...
T Consensus 72 ~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~ 151 (266)
T 3oig_A 72 AEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGG 151 (266)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGG
T ss_pred HHHHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccc
Confidence 76666654 7899999999754 1 2467788999999999999998753 22358999999765
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcccee
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
.... +....|...+..+ ..+++.++.+.. ..|+.+..++||.|
T Consensus 152 ~~~~----------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~-~~gi~v~~v~PG~v 194 (266)
T 3oig_A 152 ELVM----------------------------PNYNVMGVAKASL--------DASVKYLAADLG-KENIRVNSISAGPI 194 (266)
T ss_dssp TSCC----------------------------TTTHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECCC
T ss_pred cccC----------------------------CCcchhHHHHHHH--------HHHHHHHHHHHh-hcCcEEEEEecCcc
Confidence 4321 1111122112111 123444444433 34899999999999
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+.....+... ........ .. ....+...+++|++++.++..... ...++++++.++
T Consensus 195 ~T~~~~~~~~~~-------~~~~~~~~-~~--------~~~~~~~p~dva~~v~~l~s~~~~--~~tG~~i~vdGG 252 (266)
T 3oig_A 195 RTLSAKGISDFN-------SILKDIEE-RA--------PLRRTTTPEEVGDTAAFLFSDMSR--GITGENLHVDSG 252 (266)
T ss_dssp CSGGGTTCTTHH-------HHHHHHHH-HS--------TTSSCCCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cccccccccchH-------HHHHHHHh-cC--------CCCCCCCHHHHHHHHHHHcCCchh--cCcCCEEEECCC
Confidence 764432221110 00000000 00 012357789999999988765332 234689999887
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.1e-14 Score=136.91 Aligned_cols=220 Identities=13% Similarity=0.121 Sum_probs=140.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||||+||++++++|++.|. +|+++++.. +++.+.... ...++.++.+|++++ ++.+
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~---~V~~~~r~~-~~~~~~~~~-----~~~~~~~~~~D~~~~------~~v~ 68 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGA---SLVAVDREE-RLLAEAVAA-----LEAEAIAVVADVSDP------KAVE 68 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH-HHHHHHHHT-----CCSSEEEEECCTTSH------HHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHHH-----hcCceEEEEcCCCCH------HHHH
Confidence 4678999999999999999999999876 455554321 222221111 124788999999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceeccccccee
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRGKV 252 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~~i 252 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+.++++.+... ++..++|++||...+ ...+
T Consensus 69 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~~-- 145 (263)
T 2a4k_A 69 AVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAFG-- 145 (263)
T ss_dssp HHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHHH--
T ss_pred HHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCCC--
Confidence 6654 57999999997542 3457788999999999999999763 123589999998765 2100
Q ss_pred eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc
Q 042694 253 MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF 332 (554)
Q Consensus 253 ~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~ 332 (554)
...|..+|... ..+++.++.+.. ..|+++.++|||.|.++.....
T Consensus 146 --------------------------------~~~Y~asK~a~--~~~~~~la~e~~-~~gi~v~~v~PG~v~t~~~~~~ 190 (263)
T 2a4k_A 146 --------------------------------LAHYAAGKLGV--VGLARTLALELA-RKGVRVNVLLPGLIQTPMTAGL 190 (263)
T ss_dssp --------------------------------HHHHHHCSSHH--HHHHHHHHHHHT-TTTCEEEEEEECSBCCGGGTTS
T ss_pred --------------------------------cHHHHHHHHHH--HHHHHHHHHHhh-hhCcEEEEEEeCcCcCchhhhc
Confidence 12233332110 134455544433 3489999999999976543211
Q ss_pred cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 333 SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 333 ~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+. ....... ... + ...+...+|+|++++.++..... ...++++++.++
T Consensus 191 ~~---------~~~~~~~-~~~------p--~~~~~~p~dvA~~v~~l~s~~~~--~~tG~~i~vdgG 238 (263)
T 2a4k_A 191 PP---------WAWEQEV-GAS------P--LGRAGRPEEVAQAALFLLSEESA--YITGQALYVDGG 238 (263)
T ss_dssp CH---------HHHHHHH-HTS------T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred CH---------HHHHHHH-hcC------C--CCCCcCHHHHHHHHHHHhCcccc--CCcCCEEEECCC
Confidence 10 0000000 000 1 12367889999999988764321 234678998877
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=131.69 Aligned_cols=198 Identities=14% Similarity=0.124 Sum_probs=127.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++|+|+||||+|+||++++++|++.|.+ |++.++. ..+.+.+... .....++.++.+|++++ ++.
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~------~~v 67 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYA---LALGARSVDRLEKIAHELM----QEQGVEVFYHHLDVSKA------ESV 67 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHH----HHHCCCEEEEECCTTCH------HHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHH----hhcCCeEEEEEeccCCH------HHH
Confidence 4789999999999999999999998864 5544432 2222222211 11245889999999998 777
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceecccccc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~~~~~ 250 (554)
+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+-.++|.+||.......
T Consensus 68 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~-- 145 (235)
T 3l77_A 68 EEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLI-- 145 (235)
T ss_dssp HHHCC-HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCC--
T ss_pred HHHHHHHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccC--
Confidence 77765 78999999997542 3567889999999999999998642 123467777765432211
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhh-hhcCCCcEEEEccceeeeccc
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLG-LERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~-~~~~glp~~I~Rp~~V~g~~~ 329 (554)
+.. .. |..+|...+.+.+.+ .+..++.+..++||.|-.+..
T Consensus 146 --------------------------~~~------~~------Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~ 187 (235)
T 3l77_A 146 --------------------------PYG------GG------YVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFG 187 (235)
T ss_dssp --------------------------TTC------HH------HHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTT
T ss_pred --------------------------CCc------ch------HHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccc
Confidence 000 11 222233333333332 234689999999998854222
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhc
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHG 385 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~ 385 (554)
...+. ......++..+++|++++.++....
T Consensus 188 ~~~~~--------------------------~~~~~~~~~p~dva~~v~~l~~~~~ 217 (235)
T 3l77_A 188 GSKPG--------------------------KPKEKGYLKPDEIAEAVRCLLKLPK 217 (235)
T ss_dssp TCCSC--------------------------CCGGGTCBCHHHHHHHHHHHHTSCT
T ss_pred cccCC--------------------------cccccCCCCHHHHHHHHHHHHcCCC
Confidence 11100 0001246788999999998886643
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-13 Score=132.80 Aligned_cols=214 Identities=10% Similarity=0.042 Sum_probs=129.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||+|+||+++++.|++.|.+ |+++++..- .+.+... ..++.++.+|++++ ++.+
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~-~~~~~~~-------~~~~~~~~~Dv~~~------~~v~ 87 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEHGHR---VIISYRTEH-ASVTELR-------QAGAVALYGDFSCE------TGIM 87 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHTTCC---EEEEESSCC-HHHHHHH-------HHTCEEEECCTTSH------HHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCChH-HHHHHHH-------hcCCeEEECCCCCH------HHHH
Confidence 56899999999999999999999998875 444432211 1111110 11367899999987 7666
Q ss_pred HHhc-------CccEEEEcCCCCCc------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccce
Q 042694 188 VIAK-------EVDVIVNSAANTTF------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRGK 251 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~~ 251 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||...+....
T Consensus 88 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~-- 165 (260)
T 3gem_A 88 AFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSS-- 165 (260)
T ss_dssp HHHHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCS--
T ss_pred HHHHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCC--
Confidence 6654 69999999996532 2456789999999999999988542 2446899999976543211
Q ss_pred eeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC
Q 042694 252 VMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP 331 (554)
Q Consensus 252 i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p 331 (554)
....|...+..+ ..+++.++.+... ++.+..++||.|..+...
T Consensus 166 --------------------------~~~~Y~asKaa~--------~~l~~~la~e~~~--~Irvn~v~PG~v~t~~~~- 208 (260)
T 3gem_A 166 --------------------------KHIAYCATKAGL--------ESLTLSFAARFAP--LVKVNGIAPALLMFQPKD- 208 (260)
T ss_dssp --------------------------SCHHHHHHHHHH--------HHHHHHHHHHHTT--TCEEEEEEECTTCC-----
T ss_pred --------------------------CcHhHHHHHHHH--------HHHHHHHHHHHCC--CCEEEEEeecccccCCCC-
Confidence 111122111111 1234444433322 599999999998653221
Q ss_pred ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 332 FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 332 ~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.+.+... ..... + ..-+..++|+|++++.++.... -.++++++.++
T Consensus 209 ~~~~~~~--------------~~~~~---p--~~r~~~~edva~~v~~L~~~~~----itG~~i~vdGG 254 (260)
T 3gem_A 209 DAAYRAN--------------ALAKS---A--LGIEPGAEVIYQSLRYLLDSTY----VTGTTLTVNGG 254 (260)
T ss_dssp -------------------------C---C--SCCCCCTHHHHHHHHHHHHCSS----CCSCEEEESTT
T ss_pred CHHHHHH--------------HHhcC---C--CCCCCCHHHHHHHHHHHhhCCC----CCCCEEEECCC
Confidence 0111100 00000 0 1124457999999988874322 34689999887
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=134.72 Aligned_cols=224 Identities=16% Similarity=0.177 Sum_probs=140.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+++||||+|+||++++++|++.|. +|++.++. ..+.+.+.. ..++..+.+|++++ ++
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv~~~------~~ 68 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGA---EVLLTGRNESNIARIREEF--------GPRVHALRSDIADL------NE 68 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH--------GGGEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHh--------CCcceEEEccCCCH------HH
Confidence 5789999999999999999999999886 45555432 223333222 34788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecccccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||...+...
T Consensus 69 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 146 (255)
T 4eso_A 69 IAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGH-- 146 (255)
T ss_dssp HHHHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBC--
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCC--
Confidence 665543 79999999997642 3567889999999999999998753 223489999997654321
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
+....|...+... ..+++.++.+... .|+++..++||.|..+...
T Consensus 147 --------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~~-~gi~vn~v~PG~v~T~~~~ 191 (255)
T 4eso_A 147 --------------------------PGMSVYSASKAAL--------VSFASVLAAELLP-RGIRVNSVSPGFIDTPTKG 191 (255)
T ss_dssp --------------------------TTBHHHHHHHHHH--------HHHHHHHHHHTGG-GTCEEEEEEECSBCCSSTT
T ss_pred --------------------------CCchHHHHHHHHH--------HHHHHHHHHHHhh-hCcEEEEEecCcccCcccc
Confidence 1111122111111 1244444444433 4899999999999765332
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. ++.+. ............ .-...+...+|+|++++.++.. . .-..++++++.++
T Consensus 192 ~~-~~~~~---~~~~~~~~~~~~--------~p~~r~~~pedvA~~v~~L~s~-~--~~itG~~i~vdGG 246 (255)
T 4eso_A 192 VA-GITEA---ERAEFKTLGDNI--------TPMKRNGTADEVARAVLFLAFE-A--TFTTGAKLAVDGG 246 (255)
T ss_dssp CT-TSCHH---HHHHHHHHHHHH--------STTSSCBCHHHHHHHHHHHHHT-C--TTCCSCEEEESTT
T ss_pred cc-cCChh---hHHHHHHHHhcc--------CCCCCCcCHHHHHHHHHHHcCc-C--cCccCCEEEECCC
Confidence 10 00000 000000000000 0112456789999999887764 2 2234689999887
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-14 Score=139.07 Aligned_cols=233 Identities=15% Similarity=0.106 Sum_probs=142.1
Q ss_pred hhccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 106 KFLKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 106 ~~~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
..+++|+|+||||+ |+||++++++|++.|. +|+++++ ...+.+.+... ...++.++.+|++++
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~---- 76 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA---ELAFTYVGDRFKDRITEFAA------EFGSELVFPCDVADD---- 76 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC---EEEEEESSGGGHHHHHHHHH------HTTCCCEEECCTTCH----
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC---CEEEEecchhhHHHHHHHHH------HcCCcEEEECCCCCH----
Confidence 34688999999999 9999999999999886 4554432 22222322211 123477899999987
Q ss_pred CHHHHHHHhc-------CccEEEEcCCCCCc------------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEee
Q 042694 182 EEDLADVIAK-------EVDVIVNSAANTTF------------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVST 241 (554)
Q Consensus 182 s~~~~~~l~~-------~vdiViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST 241 (554)
++.+.+++ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||
T Consensus 77 --~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 154 (271)
T 3ek2_A 77 --AQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY 154 (271)
T ss_dssp --HHHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred --HHHHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence 77776664 68999999997532 3467889999999999999998752 12348999999
Q ss_pred ceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcc
Q 042694 242 AYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRP 321 (554)
Q Consensus 242 ~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp 321 (554)
....... +....|...+..+ ..+++.++.+.. ..|+.+.+++|
T Consensus 155 ~~~~~~~----------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~-~~gi~v~~v~P 197 (271)
T 3ek2_A 155 LGAERAI----------------------------PNYNTMGLAKAAL--------EASVRYLAVSLG-AKGVRVNAISA 197 (271)
T ss_dssp GGGTSBC----------------------------TTTTHHHHHHHHH--------HHHHHHHHHHHH-TTTCEEEEEEE
T ss_pred cccccCC----------------------------CCccchhHHHHHH--------HHHHHHHHHHHH-hcCcEEEEEec
Confidence 7654321 1111222222211 123344443332 35899999999
Q ss_pred ceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCC
Q 042694 322 SVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSV 401 (554)
Q Consensus 322 ~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~ 401 (554)
|.|..+........ ......... . .....+..++++|++++.++..... ...++++++.++
T Consensus 198 G~v~T~~~~~~~~~-------~~~~~~~~~-~--------~~~~~~~~pedva~~i~~l~s~~~~--~~tG~~i~vdgG- 258 (271)
T 3ek2_A 198 GPIKTLAASGIKSF-------GKILDFVES-N--------SPLKRNVTIEQVGNAGAFLLSDLAS--GVTAEVMHVDSG- 258 (271)
T ss_dssp CCC-----CCCHHH-------HHHHHHHHH-H--------STTSSCCCHHHHHHHHHHHHSGGGT--TCCSEEEEESTT-
T ss_pred Ccccchhhhcccch-------HHHHHHHHh-c--------CCcCCCCCHHHHHHHHHHHcCcccC--CeeeeEEEECCC-
Confidence 99976433221110 000000000 0 0012356789999999988765322 234789999988
Q ss_pred CCcccHHHH
Q 042694 402 VNPLVFQDL 410 (554)
Q Consensus 402 ~~~it~~e~ 410 (554)
..++..++
T Consensus 259 -~~~~~~~~ 266 (271)
T 3ek2_A 259 -FNAVVGGM 266 (271)
T ss_dssp -GGGBCCCC
T ss_pred -eeeehhhh
Confidence 45554443
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-13 Score=132.56 Aligned_cols=218 Identities=15% Similarity=0.104 Sum_probs=135.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+|+||||||+||++++++|++.|. +|+++++.. +++.+.... . .+.++.+|++++ ++.+
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~-~~~~~~~~~-----~--~~~~~~~D~~~~------~~~~ 65 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGA---RLVACDIEE-GPLREAAEA-----V--GAHPVVMDVADP------ASVE 65 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH-HHHHHHHHT-----T--TCEEEECCTTCH------HHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHHH-----c--CCEEEEecCCCH------HHHH
Confidence 3578999999999999999999999886 455554321 222222111 1 267899999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||...++..
T Consensus 66 ~~~~~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~-- 143 (245)
T 1uls_A 66 RGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGNL-- 143 (245)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCCT--
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCCC--
Confidence 6554 58999999997542 3467889999999999999988652 245799999998622210
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
....|...+... ..+++.++.+... .|+++.+++||.|..+...
T Consensus 144 ---------------------------~~~~Y~asK~a~--------~~~~~~la~e~~~-~gi~v~~v~PG~v~t~~~~ 187 (245)
T 1uls_A 144 ---------------------------GQANYAASMAGV--------VGLTRTLALELGR-WGIRVNTLAPGFIETRMTA 187 (245)
T ss_dssp ---------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCTTTS
T ss_pred ---------------------------CchhHHHHHHHH--------HHHHHHHHHHHhH-hCeEEEEEEeCcCcCcchh
Confidence 001121111111 1244555544433 4899999999998654321
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+. .... ...... + .-.++..+|+|++++.++..... ...++++++.++
T Consensus 188 ~~~~---------~~~~----~~~~~~---p--~~~~~~~~dvA~~v~~l~s~~~~--~~tG~~~~vdgG 237 (245)
T 1uls_A 188 KVPE---------KVRE----KAIAAT---P--LGRAGKPLEVAYAALFLLSDESS--FITGQVLFVDGG 237 (245)
T ss_dssp SSCH---------HHHH----HHHHTC---T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hcCH---------HHHH----HHHhhC---C--CCCCcCHHHHHHHHHHHhCchhc--CCcCCEEEECCC
Confidence 1100 0000 000000 1 01367889999999888764321 234678888776
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.7e-14 Score=136.06 Aligned_cols=220 Identities=16% Similarity=0.115 Sum_probs=135.3
Q ss_pred ccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcchh-----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCC
Q 042694 108 LKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINAEL-----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLG 180 (554)
Q Consensus 108 ~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~~~-----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lG 180 (554)
+++|+|+||||+ |+||++++++|++.|. +|+++++.. .+.+.+.. .+..++.+|++++
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~l~~~~---------~~~~~~~~D~~~~--- 71 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGA---ELAFTYQNDKLKGRVEEFAAQL---------GSDIVLQCDVAED--- 71 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC---EEEEEESSTTTHHHHHHHHHHT---------TCCCEEECCTTCH---
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEEcCcHHHHHHHHHHHHhc---------CCcEEEEccCCCH---
Confidence 467899999999 9999999999999876 455554321 12222211 1236789999987
Q ss_pred CCHHHHHHHhc-------CccEEEEcCCCCCc------------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEe
Q 042694 181 LEEDLADVIAK-------EVDVIVNSAANTTF------------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVS 240 (554)
Q Consensus 181 Ls~~~~~~l~~-------~vdiViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vS 240 (554)
++.+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+-.++|++|
T Consensus 72 ---~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (265)
T 1qsg_A 72 ---ASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 148 (265)
T ss_dssp ---HHHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEc
Confidence 77666654 68999999997541 2457789999999999999999753 1124899999
Q ss_pred eceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEc
Q 042694 241 TAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIR 320 (554)
Q Consensus 241 T~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~R 320 (554)
|...+... +....|...+.... .+++.++.+.. ..|+++.++|
T Consensus 149 S~~~~~~~----------------------------~~~~~Y~~sK~a~~--------~~~~~la~e~~-~~gi~v~~v~ 191 (265)
T 1qsg_A 149 YLGAERAI----------------------------PNYNVMGLAKASLE--------ANVRYMANAMG-PEGVRVNAIS 191 (265)
T ss_dssp CGGGTSBC----------------------------TTTTHHHHHHHHHH--------HHHHHHHHHHT-TTTEEEEEEE
T ss_pred chhhccCC----------------------------CCchHHHHHHHHHH--------HHHHHHHHHhh-hcCeEEEEEE
Confidence 97554321 11111222221111 23333333322 3489999999
Q ss_pred cceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 321 PSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 321 p~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
||.|.++.....+.. ......+..+ . + ...+..++|+|++++.++..... ...++++++.++
T Consensus 192 PG~v~t~~~~~~~~~-------~~~~~~~~~~-~------p--~~~~~~~~dva~~v~~l~s~~~~--~~tG~~~~vdgG 253 (265)
T 1qsg_A 192 AGPIRTLAASGIKDF-------RKMLAHCEAV-T------P--IRRTVTIEDVGNSAAFLCSDLSA--GISGEVVHVDGG 253 (265)
T ss_dssp ECCCCCTTGGGSTTH-------HHHHHHHHHH-S------T--TSSCCCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred eCCCccchhhccccc-------HHHHHHHHhc-C------C--CCCCCCHHHHHHHHHHHhCchhc--CccCCEEEECCC
Confidence 999977543211100 0000000000 0 0 12367889999999887754321 224679999887
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-13 Score=131.98 Aligned_cols=226 Identities=14% Similarity=0.145 Sum_probs=135.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+++||||+|+||++++++|++.+..+ +|++.++. ..+.+.+.. ..++.++.+|++++ ++.+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv~~~------~~v~ 66 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKY--------GDRFFYVVGDITED------SVLK 66 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHH--------GGGEEEEESCTTSH------HHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHh--------CCceEEEECCCCCH------HHHH
Confidence 5899999999999999999999987555 56655432 223333222 34788999999988 7766
Q ss_pred HHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+ .++|++||.......
T Consensus 67 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~~- 144 (254)
T 3kzv_A 67 QLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMYF- 144 (254)
T ss_dssp HHHHHHHHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCSS-
T ss_pred HHHHHHHHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccCC-
Confidence 6654 79999999997432 3567889999999999999988321 13 699999997654321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
+....|...+... ..+++.++.+ ..++.+..++||.|..+..
T Consensus 145 ---------------------------~~~~~Y~asK~a~--------~~~~~~la~e---~~~i~vn~v~PG~v~t~~~ 186 (254)
T 3kzv_A 145 ---------------------------SSWGAYGSSKAAL--------NHFAMTLANE---ERQVKAIAVAPGIVDTDMQ 186 (254)
T ss_dssp ---------------------------CCSHHHHHHHHHH--------HHHHHHHHHH---CTTSEEEEEECSSCCCCCS
T ss_pred ---------------------------CCcchHHHHHHHH--------HHHHHHHHhh---ccCcEEEEEeCCcccchhH
Confidence 1111121111111 1233333333 2589999999999976543
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...................+.. .. ....+...++++++++.++..... .--.++++++.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~r~~~p~dva~~v~~L~s~~~~-~~itG~~i~vdg~ 247 (254)
T 3kzv_A 187 VNIRENVGPSSMSAEQLKMFRG-LK--------ENNQLLDSSVPATVYAKLALHGIP-DGVNGQYLSYNDP 247 (254)
T ss_dssp CCCCCCCCTTTSCHHHHHHHHH-HH--------TTC----CHHHHHHHHHHHHHCCC-GGGTTCEEETTCG
T ss_pred HHhhcccCccccCHHHHHHHHH-HH--------hcCCcCCcccHHHHHHHHHhhccc-CCCCccEEEecCc
Confidence 3221111000000000000000 00 012467889999999988866420 1123578888765
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.4e-14 Score=134.71 Aligned_cols=222 Identities=12% Similarity=0.105 Sum_probs=139.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||+|+||++++++|++.|. +|++.+... +++.+.... ...++..+.+|++++ ++.+
T Consensus 4 l~gk~vlVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~-~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~v~ 68 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAARLAADGA---TVIVSDINA-EGAKAAAAS-----IGKKARAIAADISDP------GSVK 68 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCH-HHHHHHHHH-----HCTTEEECCCCTTCH------HHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH-HHHHHHHHH-----hCCceEEEEcCCCCH------HHHH
Confidence 5789999999999999999999999886 566655431 222221111 235788999999988 7776
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHH----HcCCCceEEEEeeceeccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAK----QCNKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+. +.+...++|++||.......
T Consensus 69 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 147 (247)
T 3rwb_A 69 ALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGT- 147 (247)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTC-
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCC-
Confidence 6665 79999999997543 24678899999999999988853 22235799999997654321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
+....|...+..+ ..+++.++.+... .|+++..++||.|..+..
T Consensus 148 ---------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~~-~gi~vn~v~PG~v~t~~~ 191 (247)
T 3rwb_A 148 ---------------------------PNMAAYVAAKGGV--------IGFTRALATELGK-YNITANAVTPGLIESDGV 191 (247)
T ss_dssp ---------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCHHH
T ss_pred ---------------------------CCchhhHHHHHHH--------HHHHHHHHHHhhh-cCeEEEEEeeCcCcCccc
Confidence 1111122112111 1344555444433 489999999999965432
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...+... .... ..... ....+...+++++++..++..... --.++++++.++
T Consensus 192 ~~~~~~~-----~~~~----~~~~~--------~~~r~~~pedva~~v~~L~s~~~~--~itG~~i~vdGG 243 (247)
T 3rwb_A 192 KASPHNE-----AFGF----VEMLQ--------AMKGKGQPEHIADVVSFLASDDAR--WITGQTLNVDAG 243 (247)
T ss_dssp HTSGGGG-----GHHH----HHHHS--------SSCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cccChhH-----HHHH----Hhccc--------ccCCCcCHHHHHHHHHHHhCcccc--CCCCCEEEECCC
Confidence 1111000 0000 00000 012345689999999888765432 234688988776
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-13 Score=131.19 Aligned_cols=217 Identities=13% Similarity=0.085 Sum_probs=130.5
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..+++|+|+||||||+||++++++|++.|. +|+++++.. +.+.+ ..++..+ +|+ .. +.+.
T Consensus 15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~-~~~~~----------~~~~~~~-~D~-~~----~~~~ 74 (249)
T 1o5i_A 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGA---EVTICARNE-ELLKR----------SGHRYVV-CDL-RK----DLDL 74 (249)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH-HHHHH----------TCSEEEE-CCT-TT----CHHH
T ss_pred hccCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCH-HHHHh----------hCCeEEE-eeH-HH----HHHH
Confidence 447899999999999999999999999876 456655432 22211 1256667 999 22 1122
Q ss_pred HHHHhcCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeeceecccccceeec
Q 042694 186 ADVIAKEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAYVNGQRRGKVME 254 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~v~~~~~~~i~E 254 (554)
.-.-..++|+|||+||.... .+.++..+++|+.|+..+.+.+ ++ .+..++|++||..++....
T Consensus 75 ~~~~~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~g~iv~isS~~~~~~~~----- 148 (249)
T 1o5i_A 75 LFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKE-KGWGRIVAITSFSVISPIE----- 148 (249)
T ss_dssp HHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEECCGGGTSCCT-----
T ss_pred HHHHhcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCcEEEEEcchHhcCCCC-----
Confidence 22222389999999996543 3467889999999987765554 33 3567999999987654311
Q ss_pred cccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccc
Q 042694 255 KPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSG 334 (554)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g 334 (554)
....|...+... ..+++.++.+.. ..|+++.++|||.|.++....
T Consensus 149 -----------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~~~~--- 193 (249)
T 1o5i_A 149 -----------------------NLYTSNSARMAL--------TGFLKTLSFEVA-PYGITVNCVAPGWTETERVKE--- 193 (249)
T ss_dssp -----------------------TBHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBCCTTHHH---
T ss_pred -----------------------CCchHHHHHHHH--------HHHHHHHHHHhh-hcCeEEEEEeeCCCccCcccc---
Confidence 111111111111 123344444332 248999999999997753210
Q ss_pred cccCCCCccceee-eeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 335 WMEGNRMMDPIIL-YYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 335 ~~~~~~~~~~i~~-~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+.. .... .... ......++.++|+|++++.++..... ...+++|++.++
T Consensus 194 ~~~------~~~~~~~~~---------~~p~~~~~~~~dvA~~i~~l~s~~~~--~~tG~~~~vdgG 243 (249)
T 1o5i_A 194 LLS------EEKKKQVES---------QIPMRRMAKPEEIASVVAFLCSEKAS--YLTGQTIVVDGG 243 (249)
T ss_dssp HSC------HHHHHHHHT---------TSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cch------hhHHHHHHh---------cCCCCCCcCHHHHHHHHHHHcCcccc--CCCCCEEEECCC
Confidence 000 0000 0000 00013477899999999888754321 234689998876
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=132.91 Aligned_cols=124 Identities=9% Similarity=0.030 Sum_probs=92.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||+|+||++++++|++.|. +|+++++ +..+.+.+.... ...++.++.+|++++ ++
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 70 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF---TVFAGRRNGEKLAPLVAEIEA-----AGGRIVARSLDARNE------DE 70 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC---EEEEEESSGGGGHHHHHHHHH-----TTCEEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEECcCCCH------HH
Confidence 4689999999999999999999999886 4555543 333333333211 235789999999988 77
Q ss_pred HHHHhc------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 186 ADVIAK------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||....
T Consensus 71 v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 146 (252)
T 3h7a_A 71 VTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASL 146 (252)
T ss_dssp HHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT
T ss_pred HHHHHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHc
Confidence 776665 78999999997542 3467889999999999998887431 244689999997654
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=136.65 Aligned_cols=222 Identities=12% Similarity=0.064 Sum_probs=136.0
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc---chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN---AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~---~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
..++|+||||||+|+||++++++|++.|. +|++.+ ........+... ....++.++.+|++++
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~---~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~------ 75 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF---RVVAGCGPNSPRRVKWLEDQK-----ALGFDFYASEGNVGDW------ 75 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTE---EEEEEECTTCSSHHHHHHHHH-----HTTCCCEEEECCTTCH------
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCCHHHHHHHHHHHH-----hcCCeeEEEecCCCCH------
Confidence 46789999999999999999999999875 444433 111222222111 1235788999999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
++.+.+.+ ++|++||+||.... .+.++..+++|+.|+.++.+.+... .+..++|++||.....
T Consensus 76 ~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 155 (256)
T 3ezl_A 76 DSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK 155 (256)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc
Confidence 66666654 78999999997542 3567889999999988887776431 2557899999975543
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. +....|...+... ..+++.++.+... .|+++.+++||.|..
T Consensus 156 ~~----------------------------~~~~~Y~asK~a~--------~~~~~~la~e~~~-~gi~v~~v~PG~v~t 198 (256)
T 3ezl_A 156 GQ----------------------------FGQTNYSTAKAGI--------HGFTMSLAQEVAT-KGVTVNTVSPGYIGT 198 (256)
T ss_dssp SC----------------------------SCCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCC
T ss_pred CC----------------------------CCCcccHHHHHHH--------HHHHHHHHHHHHH-hCCEEEEEEECcccC
Confidence 21 1111121111111 1234444443333 489999999999865
Q ss_pred cccCCc-cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKEPF-SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~p~-~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+..... +.+.. ....+ .....+...+|+|++++.++..... ...++++++.++
T Consensus 199 ~~~~~~~~~~~~----------~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~--~~tG~~i~vdgG 252 (256)
T 3ezl_A 199 DMVKAIRPDVLE----------KIVAT---------IPVRRLGSPDEIGSIVAWLASEESG--FSTGADFSLNGG 252 (256)
T ss_dssp HHHHTSCHHHHH----------HHHHH---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred ccccccCHHHHH----------HHHhc---------CCCCCCcCHHHHHHHHHHHhCCccc--CCcCcEEEECCC
Confidence 432111 11100 00000 0113466789999999887754321 234689999876
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-13 Score=133.16 Aligned_cols=222 Identities=13% Similarity=0.081 Sum_probs=134.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|+||||+|+||++++++|++.|. +|++. +. +..+...+.... ...++.++.+|++++ +
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~ 71 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEGA---NVVLTYNGAAEGAATAVAEIEK-----LGRSALAIKADLTNA------A 71 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECSSCHHHHHHHHHHHT-----TTSCCEEEECCTTCH------H
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCCHHHHHHHHHHHHh-----cCCceEEEEcCCCCH------H
Confidence 5689999999999999999999999886 44544 32 222222222211 235788999999988 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceec-cc
Q 042694 185 LADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVN-GQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~-~~ 247 (554)
+.+.+.+ ++|++||+||... + .+.++..+++|+.|+..+++.+... .+-.++|++||.... ..
T Consensus 72 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 151 (259)
T 3edm_A 72 EVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGG 151 (259)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCC
Confidence 7666664 7999999998651 1 3467889999999999999999753 122389999998664 21
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
. +....|...+..+ ..+++.++.+.. .++.+..+.||.|..+
T Consensus 152 ~----------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~--~~I~vn~v~PG~v~T~ 193 (259)
T 3edm_A 152 G----------------------------PGALAYATSKGAV--------MTFTRGLAKEVG--PKIRVNAVCPGMISTT 193 (259)
T ss_dssp S----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHT--TTCEEEEEEECCBCC-
T ss_pred C----------------------------CCcHHHHHHHHHH--------HHHHHHHHHHHC--CCCEEEEEEECCCcCc
Confidence 1 1111121111111 123344443332 2399999999998654
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....... . ........ . .....+..++|+|++++.++..... --.++++++.++
T Consensus 194 ~~~~~~~---~-----~~~~~~~~-~--------~p~~r~~~pedva~~v~~L~s~~~~--~itG~~i~vdGg 247 (259)
T 3edm_A 194 FHDTFTK---P-----EVRERVAG-A--------TSLKREGSSEDVAGLVAFLASDDAA--YVTGACYDINGG 247 (259)
T ss_dssp --------------------------------------CCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESBC
T ss_pred ccccccC---h-----HHHHHHHh-c--------CCCCCCcCHHHHHHHHHHHcCcccc--CccCCEEEECCC
Confidence 3221110 0 00000000 0 0113456789999999888765332 234689999887
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=134.06 Aligned_cols=225 Identities=14% Similarity=0.111 Sum_probs=139.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+... .....++.++.+|++++ ++
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~Dv~~~------~~ 84 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGA---RLVLSGRDVSELDAARRALG----EQFGTDVHTVAIDLAEP------DA 84 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH----HHHCCCEEEEECCTTST------TH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHH----HhcCCcEEEEEecCCCH------HH
Confidence 5789999999999999999999999886 45555432 2222222211 11235789999999998 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... +.-.++|++||...+..
T Consensus 85 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~ 164 (266)
T 4egf_A 85 PAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAP 164 (266)
T ss_dssp HHHHHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccC
Confidence 665554 79999999997542 3467889999999999999888542 12458999999866432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+... ..+++.++.+... .|+++..++||.|..+
T Consensus 165 ~~----------------------------~~~~Y~asK~a~--------~~l~~~la~e~~~-~gI~vn~v~PG~v~T~ 207 (266)
T 4egf_A 165 LP----------------------------DHYAYCTSKAGL--------VMATKVLARELGP-HGIRANSVCPTVVLTE 207 (266)
T ss_dssp CT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEESCBCSH
T ss_pred CC----------------------------CChHHHHHHHHH--------HHHHHHHHHHHhh-hCeEEEEEEeCCCcCc
Confidence 11 111122111111 1234444444333 4899999999999764
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....... + ...... .. ...-...+..++|+|++++.++..... --.++++++.++
T Consensus 208 ~~~~~~~--~-----~~~~~~----~~-----~~~p~~r~~~p~dva~~v~~L~s~~~~--~itG~~i~vdGG 262 (266)
T 4egf_A 208 MGQRVWG--D-----EAKSAP----MI-----ARIPLGRFAVPHEVSDAVVWLASDAAS--MINGVDIPVDGG 262 (266)
T ss_dssp HHHHHTC--S-----HHHHHH----HH-----TTCTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhhhhcc--C-----hHHHHH----HH-----hcCCCCCCcCHHHHHHHHHHHhCchhc--CccCcEEEECCC
Confidence 3211000 0 000000 00 000012356789999999888765332 234689998876
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=138.04 Aligned_cols=228 Identities=13% Similarity=-0.005 Sum_probs=135.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc-ch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCC------
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN-AE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENN------ 178 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~-~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~------ 178 (554)
+++|+||||||+|+||+++++.|++.|. +|++++ +. ..+.+.+... .....++.++.+|++++.
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~---~Vv~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~Dl~d~~~~~~~~ 116 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGY---AVCLHYHRSAAEANALSATLN----ARRPNSAITVQADLSNVATAPVSG 116 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHH----HHSTTCEEEEECCCSSSCBCC---
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCCHHHHHHHHHHHH----hhcCCeEEEEEeeCCCchhccccc
Confidence 5689999999999999999999999886 455544 22 2222222211 012347889999999882
Q ss_pred -----CCCCHHHHHHHhc-------CccEEEEcCCCCCc---------------------hhhHHHHHHHhchHHHHHHH
Q 042694 179 -----LGLEEDLADVIAK-------EVDVIVNSAANTTF---------------------DERYDIAIDINTRGPCRLME 225 (554)
Q Consensus 179 -----lGLs~~~~~~l~~-------~vdiViH~AA~v~~---------------------~~~~~~~~~~Nv~gt~~ll~ 225 (554)
..-+.++.+.+++ .+|++||+||.... .+.++..+++|+.|+..+++
T Consensus 117 ~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~ 196 (328)
T 2qhx_A 117 ADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIK 196 (328)
T ss_dssp ----CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 0000005555543 79999999997532 45677889999999999999
Q ss_pred HHHHc---CC------CceEEEEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCC
Q 042694 226 FAKQC---NK------LKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFST 296 (554)
Q Consensus 226 la~~~---~~------~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~ 296 (554)
++... .+ ..++|++||...+... +....|...+..+
T Consensus 197 ~~~~~m~~~~~~~~~~~g~IV~isS~~~~~~~----------------------------~~~~~Y~asKaal------- 241 (328)
T 2qhx_A 197 AFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL----------------------------LGYTIYTMAKGAL------- 241 (328)
T ss_dssp HHHHHHHHSCGGGSCSCEEEEEECCTTTTSCC----------------------------TTCHHHHHHHHHH-------
T ss_pred HHHHHHHhcCCcCCCCCcEEEEECchhhccCC----------------------------CCcHHHHHHHHHH-------
Confidence 88642 13 5689999997654321 1111122111111
Q ss_pred chHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHH
Q 042694 297 DGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNA 376 (554)
Q Consensus 297 ~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~a 376 (554)
..+++.++.+.. ..|+.+.+++||.|..+. ...+.+.. . ... .. +-. .-+...+++|++
T Consensus 242 -~~l~~~la~el~-~~gIrvn~v~PG~v~T~~-~~~~~~~~------~----~~~-~~------p~~-~r~~~pedvA~~ 300 (328)
T 2qhx_A 242 -EGLTRSAALELA-PLQIRVNGVGPGLSVLVD-DMPPAVWE------G----HRS-KV------PLY-QRDSSAAEVSDV 300 (328)
T ss_dssp -HHHHHHHHHHHG-GGTEEEEEEEESSBSCCC-CSCHHHHH------H----HHT-TC------TTT-TSCBCHHHHHHH
T ss_pred -HHHHHHHHHHHh-hcCcEEEEEecCcccCCc-cccHHHHH------H----HHh-hC------CCC-CCCCCHHHHHHH
Confidence 123344443332 248999999999986543 11111000 0 000 00 000 035678999999
Q ss_pred HHHHHHHhcccCCCCCeEEEeeCC
Q 042694 377 TLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 377 ii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
++.++..... ...+.++++.++
T Consensus 301 v~~l~s~~~~--~itG~~i~vdGG 322 (328)
T 2qhx_A 301 VIFLCSSKAK--YITGTCVKVDGG 322 (328)
T ss_dssp HHHHHSGGGT--TCCSCEEEESTT
T ss_pred HHHHhCcccc--CccCcEEEECCC
Confidence 9988754321 234678888776
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-14 Score=136.30 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=89.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||||+||++++++|++.|. +|+++++..- ...++..+.+|++++ ++.+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~--------------~~~~~~~~~~Dl~~~------~~v~ 62 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGS---KVIDLSIHDP--------------GEAKYDHIECDVTNP------DQVK 62 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESSCC--------------CSCSSEEEECCTTCH------HHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEecCcc--------------cCCceEEEEecCCCH------HHHH
Confidence 4689999999999999999999999886 4555543210 024678899999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
.+.+ ++|+|||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||...+.
T Consensus 63 ~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 138 (264)
T 2dtx_A 63 ASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI 138 (264)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc
Confidence 6654 79999999997543 3468899999999999999988642 2457999999986643
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=135.69 Aligned_cols=223 Identities=15% Similarity=0.099 Sum_probs=139.0
Q ss_pred ccCcEEEEeccccc--ccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGF--LAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGF--lG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|+||||||+ ||++++++|++.|. +|++++.. ..+.+.+... ...++.++.+|++++ +
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~l~~------~~~~~~~~~~Dl~~~------~ 88 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREGA---ELAFTYVGQFKDRVEKLCA------EFNPAAVLPCDVISD------Q 88 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTTC---EEEEEECTTCHHHHHHHHG------GGCCSEEEECCTTCH------H
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcCC---EEEEeeCchHHHHHHHHHH------hcCCceEEEeecCCH------H
Confidence 57899999999988 99999999999886 45554332 2222222211 123578899999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc------------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeece
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF------------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAY 243 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~ 243 (554)
+.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||..
T Consensus 89 ~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~ 168 (280)
T 3nrc_A 89 EIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIG 168 (280)
T ss_dssp HHHHHHHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccc
Confidence 6666654 57999999997642 3467788999999999999998753 1346899999976
Q ss_pred ecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccce
Q 042694 244 VNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 244 v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
..... +....|...+..+ ..+++.++.+... .|+.+..++||.
T Consensus 169 ~~~~~----------------------------~~~~~Y~asKaal--------~~~~~~la~e~~~-~gi~v~~v~PG~ 211 (280)
T 3nrc_A 169 AEKAM----------------------------PSYNTMGVAKASL--------EATVRYTALALGE-DGIKVNAVSAGP 211 (280)
T ss_dssp GTSCC----------------------------TTTHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECC
T ss_pred cccCC----------------------------CCchhhHHHHHHH--------HHHHHHHHHHHHH-cCcEEEEEeecc
Confidence 54321 1111122112111 1234444443332 489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|..+........ ......... .. ....+..++++|++++.++..... .-.++++++.++
T Consensus 212 v~T~~~~~~~~~-------~~~~~~~~~-~~--------p~~~~~~pedvA~~v~~l~s~~~~--~~tG~~i~vdgG 270 (280)
T 3nrc_A 212 IKTLAASGISNF-------KKMLDYNAM-VS--------PLKKNVDIMEVGNTVAFLCSDMAT--GITGEVVHVDAG 270 (280)
T ss_dssp CCCSGGGGCTTH-------HHHHHHHHH-HS--------TTCSCCCHHHHHHHHHHTTSGGGT--TCCSCEEEESTT
T ss_pred ccchhhhcCcch-------HHHHHHHHh-cC--------CCCCCCCHHHHHHHHHHHhCcccC--CcCCcEEEECCC
Confidence 976433211110 000000000 00 012366789999999887764321 234689999877
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=138.96 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=139.2
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.+++|+|+||||+|+||++++++|++.|. +|++.++. ..+...+... .....++.++.+|++++ +
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~Dv~~~------~ 90 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC---HTVIASRSLPRVLTAARKLA----GATGRRCLPLSMDVRAP------P 90 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESCHHHHHHHHHHHH----HHHSSCEEEEECCTTCH------H
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHH----HhcCCcEEEEEcCCCCH------H
Confidence 36789999999999999999999999876 45555432 1122221110 11235789999999987 6
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
+.+.+.+ .+|++||+||.... .+.++..+++|+.|+.++.+.+... .+..++|++||......
T Consensus 91 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 170 (277)
T 4fc7_A 91 AVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRG 170 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHT
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCC
Confidence 6666654 79999999996432 3568899999999999999988531 23468999999765432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+..+ ..+++.++.+... .|+++..++||.|.++
T Consensus 171 ~~----------------------------~~~~Y~asKaa~--------~~l~~~la~e~~~-~gi~vn~v~PG~v~t~ 213 (277)
T 4fc7_A 171 QA----------------------------LQVHAGSAKAAV--------DAMTRHLAVEWGP-QNIRVNSLAPGPISGT 213 (277)
T ss_dssp CT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECCBSSS
T ss_pred CC----------------------------CcHHHHHHHHHH--------HHHHHHHHHHhhh-cCeEEEEEEECCEecc
Confidence 11 111111111111 1234444443333 4899999999999764
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
... .... ........ ... ..-...+...+|+|++++.++..... --.++++++.++
T Consensus 214 ~~~---~~~~---~~~~~~~~----~~~-----~~p~~r~~~p~dvA~~v~fL~s~~~~--~itG~~i~vdGG 269 (277)
T 4fc7_A 214 EGL---RRLG---GPQASLST----KVT-----ASPLQRLGNKTEIAHSVLYLASPLAS--YVTGAVLVADGG 269 (277)
T ss_dssp HHH---HHHS---CCHHHHHH----HHH-----TSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhh---hhcc---CCHHHHHH----Hhc-----cCCCCCCcCHHHHHHHHHHHcCCccC--CcCCCEEEECCC
Confidence 210 0000 00000000 000 00112356789999999988764331 234689999887
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-13 Score=134.32 Aligned_cols=223 Identities=14% Similarity=0.097 Sum_probs=139.3
Q ss_pred ccCcEEEEeccccc--ccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATGF--LAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTGF--lG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+++|+|+||||+|+ ||+++++.|++.|.+ |++.++. ..+.+.+... ...++.++.+|++++
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~---V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~Dv~d~------ 93 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGAE---LAFTYQGDALKKRVEPLAE------ELGAFVAGHCDVADA------ 93 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTCE---EEEEECSHHHHHHHHHHHH------HHTCEEEEECCTTCH------
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE---EEEEcCCHHHHHHHHHHHH------hcCCceEEECCCCCH------
Confidence 67899999999999 999999999998864 5544332 1122222111 123678999999988
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeecee
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v 244 (554)
++.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||...
T Consensus 94 ~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~ 173 (293)
T 3grk_A 94 ASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGA 173 (293)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGG
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhh
Confidence 77766654 79999999997641 3567889999999999999998753 23458999999765
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcccee
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
.... +....|...+..+ ..+++.++.+... .|+.+..++||.|
T Consensus 174 ~~~~----------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~~-~gI~vn~v~PG~v 216 (293)
T 3grk_A 174 EKVM----------------------------PNYNVMGVAKAAL--------EASVKYLAVDLGP-QNIRVNAISAGPI 216 (293)
T ss_dssp TSBC----------------------------TTTTHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECCC
T ss_pred ccCC----------------------------CchHHHHHHHHHH--------HHHHHHHHHHHhH-hCCEEEEEecCCC
Confidence 4321 1111222222211 1244444444333 4899999999999
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+........ ......... .. + ...+...+|+|++++.++..... ...++++++.++
T Consensus 217 ~T~~~~~~~~~-------~~~~~~~~~-~~------p--~~r~~~pedvA~~v~~L~s~~~~--~itG~~i~vdGG 274 (293)
T 3grk_A 217 KTLAASGIGDF-------RYILKWNEY-NA------P--LRRTVTIDEVGDVGLYFLSDLSR--SVTGEVHHADSG 274 (293)
T ss_dssp CC------CCH-------HHHHHHHHH-HS------T--TSSCCCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cchhhhcccch-------HHHHHHHHh-cC------C--CCCCCCHHHHHHHHHHHcCcccc--CCcceEEEECCC
Confidence 76433211110 000000000 00 0 12356789999999888765332 234689999887
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-14 Score=137.21 Aligned_cols=233 Identities=13% Similarity=0.084 Sum_probs=139.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+++||||+|+||++++++|++.|.+ |++... ...+.+.+.... ...++.++.+|++++ +
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G~~---V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~ 81 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLGAK---VVVNYANSTKDAEKVVSEIKA-----LGSDAIAIKADIRQV------P 81 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTTCE---EEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTSH------H
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCH------H
Confidence 67899999999999999999999998864 444322 222333322211 245789999999988 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceeccccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~ 249 (554)
+.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||.......
T Consensus 82 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 160 (270)
T 3is3_A 82 EIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFS- 160 (270)
T ss_dssp HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTCC-
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccCC-
Confidence 7666654 78999999997643 3568899999999999999998763 223489999996521110
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
.+....|...+... ..+++.++.+.. ..|+.+..++||.|..+..
T Consensus 161 --------------------------~~~~~~Y~asKaa~--------~~~~~~la~e~~-~~gi~vn~v~PG~v~T~~~ 205 (270)
T 3is3_A 161 --------------------------VPKHSLYSGSKGAV--------DSFVRIFSKDCG-DKKITVNAVAPGGTVTDMF 205 (270)
T ss_dssp --------------------------CTTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEECSBCSTTH
T ss_pred --------------------------CCCCchhHHHHHHH--------HHHHHHHHHHhc-ccCeEEEEEEeCCccChhh
Confidence 01111122112111 123444444333 3489999999999976432
Q ss_pred CCcc-ccccCC-CCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFS-GWMEGN-RMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~-g~~~~~-~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... .+.... .....-.. . .. ....-...+...+|+|++++.++..... --.++++++.++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~---~-~~----~~~~p~~r~~~p~dvA~~v~~L~s~~~~--~itG~~i~vdGG 268 (270)
T 3is3_A 206 HEVSHHYIPNGTSYTAEQRQ---Q-MA----AHASPLHRNGWPQDVANVVGFLVSKEGE--WVNGKVLTLDGG 268 (270)
T ss_dssp HHHGGGGSTTGGGSCHHHHH---H-HH----HHHSTTCSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred hhhhhhccccccccchHHHH---H-HH----HhcCCCCCCCCHHHHHHHHHHHcCCccC--CccCcEEEeCCC
Confidence 1100 000000 00000000 0 00 0000112356689999999888754331 234688888776
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=134.46 Aligned_cols=205 Identities=14% Similarity=0.088 Sum_probs=124.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..+|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+.. ..++.++.+|++++ ++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv~d~------~~ 88 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAGY---GVALAGRRLDALQETAAEI--------GDDALCVPTDVTDP------DS 88 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH--------TSCCEEEECCTTSH------HH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHh--------CCCeEEEEecCCCH------HH
Confidence 4678999999999999999999999886 45555432 222222221 25788999999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CC--CceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NK--LKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~--~k~~v~vST~~v~ 245 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+ -.++|++||...+
T Consensus 89 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~ 168 (272)
T 4dyv_A 89 VRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISAT 168 (272)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTT
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhc
Confidence 776665 89999999997432 3467899999999998888877542 11 3589999997654
Q ss_pred ccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 246 GQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 246 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
... +....|...+..+ ..+++.++.+.. ..|+.+..++||.|.
T Consensus 169 ~~~----------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~-~~gI~vn~v~PG~v~ 211 (272)
T 4dyv_A 169 SPR----------------------------PYSAPYTATKHAI--------TGLTKSTSLDGR-VHDIACGQIDIGNAD 211 (272)
T ss_dssp SCC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEEEECC
T ss_pred CCC----------------------------CCchHHHHHHHHH--------HHHHHHHHHHhC-ccCEEEEEEEECccc
Confidence 321 1111122222111 123444444333 248999999999986
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhc
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHG 385 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~ 385 (554)
.+....... . ... . .... ....+..++|+|++++.++..+.
T Consensus 212 T~~~~~~~~---~---~~~----~-~~~~--------~~~~~~~pedvA~~v~fL~s~~~ 252 (272)
T 4dyv_A 212 TPMAQKMKA---G---VPQ----A-DLSI--------KVEPVMDVAHVASAVVYMASLPL 252 (272)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHSCT
T ss_pred Chhhhhhcc---c---chh----h-hhcc--------cccCCCCHHHHHHHHHHHhCCCC
Confidence 543221110 0 000 0 0000 01236789999999999887644
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=131.29 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=86.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+||||||+||++++++|++.|. +|+++++. ..+.+.+. ..++..+.+|++++ ++++
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~~---------~~~~~~~~~D~~~~------~~~~ 66 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGY---RVGLMARDEKRLQALAAE---------LEGALPLPGDVREE------GDWA 66 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH---------STTCEEEECCTTCH------HHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHH---------hhhceEEEecCCCH------HHHH
Confidence 57899999999999999999999876 45555432 12222221 12678899999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~ 246 (554)
.+.+ ++|+|||+||.... .+.++..+++|+.|+..+++.+.. + .+..++|++||...+.
T Consensus 67 ~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 142 (234)
T 2ehd_A 67 RAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN 142 (234)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC
Confidence 5553 78999999997542 346788999999999876665532 1 3568999999986543
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=137.80 Aligned_cols=237 Identities=12% Similarity=0.037 Sum_probs=140.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-----------hHHHHHHHcCCchhhhccCcEEEEEccCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-----------LFKCLKQTYGKSYQAFMLSKLVPAVGNVCE 176 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-----------~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~ 176 (554)
+++|+|+||||+|+||+++++.|++.|. +|++++.. ..+.+.+.... ......++.++.+|+++
T Consensus 44 l~gk~~lVTGas~GIG~aia~~la~~G~---~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dv~d 118 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRTHAVRLAQDGA---DIVAIDLCRQQPNLDYAQGSPEELKETVRL--VEEQGRRIIARQADVRD 118 (317)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECCCCCTTCCSCCCCHHHHHHHHHH--HHHTTCCEEEEECCTTC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---eEEEEecccccccccccccCHHHHHHHHHH--HHhcCCeEEEEECCCCC
Confidence 5789999999999999999999999886 44544211 12222221110 01124578999999998
Q ss_pred CCCCCCHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEEE
Q 042694 177 NNLGLEEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQ 238 (554)
Q Consensus 177 ~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~ 238 (554)
+ ++.+.+++ .+|++||+||.... .+.++..+++|+.|+..+++.+... +.-.++|+
T Consensus 119 ~------~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~ 192 (317)
T 3oec_A 119 L------ASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIF 192 (317)
T ss_dssp H------HHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEE
T ss_pred H------HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 8 77666654 79999999997542 3578889999999999999988542 12357999
Q ss_pred EeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEE
Q 042694 239 VSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVI 318 (554)
Q Consensus 239 vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I 318 (554)
+||...+.... ....|...+..+ ..+++.++.+... .|+++..
T Consensus 193 isS~~~~~~~~----------------------------~~~~Y~asKaa~--------~~l~~~la~e~~~-~gI~vn~ 235 (317)
T 3oec_A 193 VSSTVGLRGAP----------------------------GQSHYAASKHGV--------QGLMLSLANEVGR-HNIRVNS 235 (317)
T ss_dssp ECCGGGSSCCT----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEE
T ss_pred ECcHHhcCCCC----------------------------CCcchHHHHHHH--------HHHHHHHHHHHhh-cCeEEEE
Confidence 99976543211 111122111111 1234444443332 4899999
Q ss_pred EccceeeecccCCc---cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEE
Q 042694 319 IRPSVIESTCKEPF---SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVY 395 (554)
Q Consensus 319 ~Rp~~V~g~~~~p~---~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vy 395 (554)
++||.|.++..... ..+..... .+..... ..... ........++.++|||++++.++..... --.++++
T Consensus 236 v~PG~v~T~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~---~~~~~p~~~~~pedvA~av~fL~s~~a~--~itG~~i 307 (317)
T 3oec_A 236 VNPGAVNTEMALNEKLLKMFLPHLE--NPTREDA-AELFS---QLTLLPIPWVEPEDVSNAVAWLASDEAR--YIHGAAI 307 (317)
T ss_dssp EEECSBSSHHHHCHHHHHHHCTTCS--SCCHHHH-HHHHT---TTCSSSSSSBCHHHHHHHHHHHTSGGGT--TCCSCEE
T ss_pred EecCcccCccccchhhhhhhhhhcc--ccchhHH-HHHHh---hhccCCCCCCCHHHHHHHHHHHcCCccc--CCCCCEE
Confidence 99999976432110 00000000 0000000 00000 0011114678899999999887754331 2346899
Q ss_pred EeeCC
Q 042694 396 QIASS 400 (554)
Q Consensus 396 n~~~~ 400 (554)
++.++
T Consensus 308 ~vdGG 312 (317)
T 3oec_A 308 PVDGG 312 (317)
T ss_dssp EESTT
T ss_pred EECcc
Confidence 99876
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=134.75 Aligned_cols=125 Identities=13% Similarity=0.131 Sum_probs=91.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+||||||||+||++++++|++.|. +|+++++. ..+.+.+.... .....++.++.+|++++ ++
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~------~~ 97 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGL---KVVGCARTVGNIEELAAECKS---AGYPGTLIPYRCDLSNE------ED 97 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH---TTCSSEEEEEECCTTCH------HH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEECChHHHHHHHHHHHh---cCCCceEEEEEecCCCH------HH
Confidence 5789999999999999999999999876 45555432 22222222110 00124688999999987 76
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchH----HHHHHHHHHHcCCC--ceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRG----PCRLMEFAKQCNKL--KLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~g----t~~ll~la~~~~~~--k~~v~vST~~v~ 245 (554)
++.+++ ++|+|||+||.... .+.++..+++|+.| ++.+++.+++. +. .++|++||...+
T Consensus 98 v~~~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~-~~~~g~iv~isS~~~~ 176 (279)
T 1xg5_A 98 ILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKER-NVDDGHIININSMSGH 176 (279)
T ss_dssp HHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCSCEEEEECCGGGT
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCceEEEEcChhhc
Confidence 666654 79999999996532 35678899999999 77777777763 44 799999998765
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-13 Score=131.04 Aligned_cols=233 Identities=14% Similarity=0.082 Sum_probs=139.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch------------hHHHHHHHcCCchhhhccCcEEEEEccCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE------------LFKCLKQTYGKSYQAFMLSKLVPAVGNVC 175 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~------------~~~~l~~~~~~~~~~~~~~kv~~v~GDl~ 175 (554)
+++|+++||||+|+||++++++|++.|. +|++++.. ..+.+.+.... ......++.++.+|++
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~ 83 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEGA---DIIAVDIAGKLPSCVPYDPASPDDLSETVRL--VEAANRRIVAAVVDTR 83 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECCSCCCTTCCSCCCCHHHHHHHHHH--HHHTTCCEEEEECCTT
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcCC---EEEEEeccccccccccccccCHHHHHHHHHH--HHhcCCeEEEEECCCC
Confidence 5789999999999999999999999886 45554320 12222221110 0112457899999999
Q ss_pred CCCCCCCHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceEE
Q 042694 176 ENNLGLEEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLFV 237 (554)
Q Consensus 176 ~~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v 237 (554)
++ ++.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... ++-.++|
T Consensus 84 ~~------~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv 157 (277)
T 3tsc_A 84 DF------DRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSII 157 (277)
T ss_dssp CH------HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CH------HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 87 66666654 69999999997543 3467889999999999999887542 1245899
Q ss_pred EEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEE
Q 042694 238 QVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVV 317 (554)
Q Consensus 238 ~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~ 317 (554)
++||...+.... ....|...+..+ ..+++.++.+.. ..|+.+.
T Consensus 158 ~isS~~~~~~~~----------------------------~~~~Y~asKaa~--------~~~~~~la~e~~-~~gi~vn 200 (277)
T 3tsc_A 158 LISSAAGMKMQP----------------------------FMIHYTASKHAV--------TGLARAFAAELG-KHSIRVN 200 (277)
T ss_dssp EECCGGGTSCCS----------------------------SCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEE
T ss_pred EEccHhhCCCCC----------------------------CchhhHHHHHHH--------HHHHHHHHHHhC-ccCeEEE
Confidence 999986543211 111122112111 123444444433 2489999
Q ss_pred EEccceeeecccCCc--cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEE
Q 042694 318 IIRPSVIESTCKEPF--SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVY 395 (554)
Q Consensus 318 I~Rp~~V~g~~~~p~--~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vy 395 (554)
.++||.|..+..... ....... ...+-. ....... .+ .-+...+|+|++++.++..... .-.++++
T Consensus 201 ~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~---~p---~r~~~pedvA~~v~~L~s~~~~--~itG~~i 268 (277)
T 3tsc_A 201 SVHPGPVNTPMGSGDMVTAVGQAM-ETNPQL---SHVLTPF---LP---DWVAEPEDIADTVCWLASDESR--KVTAAQI 268 (277)
T ss_dssp EEEESSBSSGGGSHHHHHHHHHHH-HTCGGG---TTTTCCS---SS---CSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEeCCCcCCcccchhhhhhhhcc-cccHHH---HHHhhhc---cC---CCCCCHHHHHHHHHHHhCcccc--CCcCCEE
Confidence 999999966432110 0000000 000000 0000000 01 1367899999999988765432 2346889
Q ss_pred EeeCC
Q 042694 396 QIASS 400 (554)
Q Consensus 396 n~~~~ 400 (554)
++.++
T Consensus 269 ~vdGG 273 (277)
T 3tsc_A 269 PVDQG 273 (277)
T ss_dssp EESTT
T ss_pred eeCCC
Confidence 88876
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=135.38 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=89.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||||+||++++++|++.|. +|+++++. ..+.+.+... .....++.++.+|++++ +.
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~d~------~~ 92 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGA---HVVVTARSKETLQKVVSHCL----ELGAASAHYIAGTMEDM------TF 92 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH----HHTCSEEEEEECCTTCH------HH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH----HhCCCceEEEeCCCCCH------HH
Confidence 5789999999999999999999999876 45555432 2222222211 01123688999999987 66
Q ss_pred HHHHhc-------CccEEEEcC-CCCCc------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSA-ANTTF------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~A-A~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~ 245 (554)
.+.+.+ ++|+|||+| +.... .+.++..+++|+.|+.++++.+... .+..++|++||...+
T Consensus 93 v~~~~~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~ 168 (286)
T 1xu9_A 93 AEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK 168 (286)
T ss_dssp HHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT
T ss_pred HHHHHHHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccc
Confidence 665554 799999994 54321 3567888999999999999988642 123599999998654
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=132.34 Aligned_cols=123 Identities=15% Similarity=0.045 Sum_probs=91.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--h--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--L--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+|+|+||||||+||++++++|++.|. +|+++++. . .+.+.+.... ...++.++.+|++++ ++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 67 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGF---DIAVADLPQQEEQAAETIKLIEA-----ADQKAVFVGLDVTDK------AN 67 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEECGGGHHHHHHHHHHHHT-----TTCCEEEEECCTTCH------HH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCcchHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 68999999999999999999999886 45555432 1 2222222211 134788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCC-ceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKL-KLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~-k~~v~vST~~v~~ 246 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+. .++|++||...+.
T Consensus 68 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 146 (258)
T 3a28_C 68 FDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ 146 (258)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc
Confidence 666654 79999999997543 2467889999999999999988652 244 7999999986543
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.8e-14 Score=136.36 Aligned_cols=224 Identities=11% Similarity=0.095 Sum_probs=137.6
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..+++|+||||||+|+||++++++|++.|. +|++++...- . ....+..+.+|++++ ++
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~-----~--------~~~~~~~~~~Dv~~~------~~ 67 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGA---KVVSVSLDEK-----S--------DVNVSDHFKIDVTNE------EE 67 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCC---------------CTTSSEEEECCTTCH------HH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCch-----h--------ccCceeEEEecCCCH------HH
Confidence 447899999999999999999999999886 4555543210 0 122556789999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||...+...
T Consensus 68 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~ 147 (269)
T 3vtz_A 68 VKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAAT 147 (269)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC
Confidence 666654 79999999997543 2467788999999999999887541 245699999998765432
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. ....|...+..+ ..+++.++.+.. .++.+..++||.|.++.
T Consensus 148 ~----------------------------~~~~Y~asKaa~--------~~l~~~la~e~~--~~i~vn~v~PG~v~T~~ 189 (269)
T 3vtz_A 148 K----------------------------NAAAYVTSKHAL--------LGLTRSVAIDYA--PKIRCNAVCPGTIMTPM 189 (269)
T ss_dssp T----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHT--TTEEEEEEEECSBCCHH
T ss_pred C----------------------------CChhHHHHHHHH--------HHHHHHHHHHhc--CCCEEEEEEECCCcCcc
Confidence 1 111111111111 123334433332 27999999999997643
Q ss_pred cCCcccccc--CCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWME--GNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~--~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
......... ...........+.. ..-...+..++|+|++++.++..... --.++++++.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~--~itG~~i~vdGG 252 (269)
T 3vtz_A 190 VIKAAKMEVGEDENAVERKIEEWGR---------QHPMGRIGRPEEVAEVVAFLASDRSS--FITGACLTVDGG 252 (269)
T ss_dssp HHHHHHHHHCCSTTHHHHHHHHHHH---------HSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhhhhhccccccchhhHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCCccC--CCcCcEEEECCC
Confidence 210000000 00000000000000 01113467899999999888765332 234689999887
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=131.59 Aligned_cols=215 Identities=10% Similarity=0.094 Sum_probs=133.6
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccC--CCCCCCCC
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNV--CENNLGLE 182 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl--~~~~lGLs 182 (554)
.+++|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+... .....++.++.+|+ +++
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~----- 76 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGA---TVILLGRNEEKLRQVASHIN----EETGRQPQWFILDLLTCTS----- 76 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH----HHHSCCCEEEECCTTTCCH-----
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHH----hhcCCCceEEEEecccCCH-----
Confidence 46789999999999999999999999886 45555432 2222222211 11223678899999 665
Q ss_pred HHHHHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 183 EDLADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 183 ~~~~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
++.+.+.+ .+|++||+||... + .+.++..+++|+.|+..+++.+... .+..++|++||...
T Consensus 77 -~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~ 155 (252)
T 3f1l_A 77 -ENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVG 155 (252)
T ss_dssp -HHHHHHHHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred -HHHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhh
Confidence 66665554 7999999999742 1 3467889999999999999988431 34579999999765
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcccee
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
.... +....|...+... ..+++.++.+.. ..+.+..+.||.|
T Consensus 156 ~~~~----------------------------~~~~~Y~asK~a~--------~~l~~~la~e~~--~~irvn~v~PG~v 197 (252)
T 3f1l_A 156 RQGR----------------------------ANWGAYAASKFAT--------EGMMQVLADEYQ--QRLRVNCINPGGT 197 (252)
T ss_dssp TSCC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHTT--TTCEEEEEECCSB
T ss_pred ccCC----------------------------CCCchhHHHHHHH--------HHHHHHHHHHhc--CCcEEEEEecCcc
Confidence 3321 1111121111111 123344443332 2388888998887
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
-.+... .... ......+...+|++++++.++..... ...++++++.++
T Consensus 198 ~t~~~~---~~~~-----------------------~~~~~~~~~p~dva~~~~~L~s~~~~--~itG~~i~vdgG 245 (252)
T 3f1l_A 198 RTAMRA---SAFP-----------------------TEDPQKLKTPADIMPLYLWLMGDDSR--RKTGMTFDAQPG 245 (252)
T ss_dssp SSHHHH---HHCT-----------------------TCCGGGSBCTGGGHHHHHHHHSGGGT--TCCSCEEESSCC
T ss_pred cCchhh---hhCC-----------------------ccchhccCCHHHHHHHHHHHcCcccc--CCCCCEEEeCCC
Confidence 442110 0000 00012356778999999888765432 234689999887
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=133.38 Aligned_cols=223 Identities=16% Similarity=0.117 Sum_probs=134.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-c--chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-N--AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~--~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|+++||||+|+||++++++|++.|.+ |++. + ....+.+.+.... ...++.++.+|++++ +
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~---Vv~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~------~ 90 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFT---VVINYAGKAAAAEEVAGKIEA-----AGGKALTAQADVSDP------A 90 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCE---EEEEESSCSHHHHHHHHHHHH-----TTCCEEEEECCTTCH------H
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEcCCCHHHHHHHHHHHHh-----cCCeEEEEEcCCCCH------H
Confidence 46899999999999999999999999864 4443 2 2223333322211 235788999999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceeccccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~ 249 (554)
+.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||.......
T Consensus 91 ~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 169 (267)
T 3u5t_A 91 AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLH- 169 (267)
T ss_dssp HHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCC-
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCC-
Confidence 7666654 79999999997542 2457888999999999999888652 223489999987553321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
+....|...+..+ ..+++.++.+.. ..|+.+..+.||.|..+..
T Consensus 170 ---------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~-~~gI~vn~v~PG~v~T~~~ 213 (267)
T 3u5t_A 170 ---------------------------PSYGIYAAAKAGV--------EAMTHVLSKELR-GRDITVNAVAPGPTATDLF 213 (267)
T ss_dssp ---------------------------TTCHHHHHHHHHH--------HHHHHHHHHHTT-TSCCEEEEEEECCBC----
T ss_pred ---------------------------CCchHHHHHHHHH--------HHHHHHHHHHhh-hhCCEEEEEEECCCcCccc
Confidence 1111121111111 123444443332 3489999999999855321
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. ... ......+. ...-...+..++|+|++++.++..... --.++++++.++
T Consensus 214 ~~---~~~-----~~~~~~~~---------~~~p~~r~~~pedvA~~v~~L~s~~~~--~itG~~i~vdGG 265 (267)
T 3u5t_A 214 LE---GKS-----DEVRDRFA---------KLAPLERLGTPQDIAGAVAFLAGPDGA--WVNGQVLRANGG 265 (267)
T ss_dssp ---------------CHHHHH---------TSSTTCSCBCHHHHHHHHHHHHSTTTT--TCCSEEEEESSS
T ss_pred cc---cCC-----HHHHHHHH---------hcCCCCCCcCHHHHHHHHHHHhCcccc--CccCCEEEeCCC
Confidence 10 000 00000000 001112466789999999888754321 234688888765
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=133.12 Aligned_cols=224 Identities=13% Similarity=0.115 Sum_probs=137.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|+|+||||+|+||++++++|++.|. +|+++ ++ ...+...+... ....++..+.+|++++ +
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~------~ 70 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGA---LVAIHYGNRKEEAEETVYEIQ-----SNGGSAFSIGANLESL------H 70 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCSHHHHHHHHHHH-----HTTCEEEEEECCTTSH------H
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCchHHHHHHHHHHH-----hcCCceEEEecCcCCH------H
Confidence 5689999999999999999999999886 44443 22 22222222211 1245788999999987 5
Q ss_pred HHHHHhc-------------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeece
Q 042694 185 LADVIAK-------------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAY 243 (554)
Q Consensus 185 ~~~~l~~-------------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~ 243 (554)
..+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~ 150 (255)
T 3icc_A 71 GVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA 150 (255)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred HHHHHHHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChh
Confidence 5555543 29999999997532 2467788999999999999998752 2235899999976
Q ss_pred ecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccce
Q 042694 244 VNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 244 v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
..... +....|...+... ..+++.++.+... .|+.+..++||.
T Consensus 151 ~~~~~----------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~~-~gi~v~~v~PG~ 193 (255)
T 3icc_A 151 TRISL----------------------------PDFIAYSMTKGAI--------NTMTFTLAKQLGA-RGITVNAILPGF 193 (255)
T ss_dssp GTSCC----------------------------TTBHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECC
T ss_pred hccCC----------------------------CCcchhHHhHHHH--------HHHHHHHHHHHHh-cCeEEEEEEEee
Confidence 54321 1111121111111 1233444433332 489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|..+....... . +...... ........+..+++++++++.++..... -..++++++.++
T Consensus 194 v~t~~~~~~~~---~-----~~~~~~~--------~~~~~~~~~~~~~dva~~~~~l~s~~~~--~~tG~~i~vdgG 252 (255)
T 3icc_A 194 VKTDMNAELLS---D-----PMMKQYA--------TTISAFNRLGEVEDIADTAAFLASPDSR--WVTGQLIDVSGG 252 (255)
T ss_dssp BCCSSSTTTTT---S-----HHHHHHH--------HHTSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESSS
T ss_pred ecccchhhhcc---c-----HHHHHhh--------hccCCcCCCCCHHHHHHHHHHHhCcccC--CccCCEEEecCC
Confidence 96643322111 0 0000000 0011123467789999999887754321 234689998876
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=131.28 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=90.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+++||||||+||++++++|++.|. +|+++++. ..+.+.++... ...++..+.+|++++ ++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~~~------~~ 70 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGA---AVAIAARRVEKLRALGDELTA-----AGAKVHVLELDVADR------QG 70 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEECCCCCH------HH
Confidence 4689999999999999999999999886 45555432 22222222110 134788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+ .++|++||....
T Consensus 71 ~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~ 146 (247)
T 2jah_A 71 VDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGR 146 (247)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGT
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhc
Confidence 666554 79999999997532 2467889999999999999988642 23 699999997654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=133.52 Aligned_cols=226 Identities=12% Similarity=0.068 Sum_probs=136.3
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.+++|+|+||||+|+||++++++|++.|. +|+++++. ..+.+.+... .....++.++.+|++++ +
T Consensus 18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~Dl~~~------~ 84 (267)
T 1vl8_A 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGC---SVVVASRNLEEASEAAQKLT----EKYGVETMAFRCDVSNY------E 84 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH----HHHCCCEEEEECCTTCH------H
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHH----HhcCCeEEEEEcCCCCH------H
Confidence 36789999999999999999999999886 45555432 1222221110 00134688899999987 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeecee-cc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYV-NG 246 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v-~~ 246 (554)
+.+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+.. + .+..++|++||..+ ..
T Consensus 85 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~ 164 (267)
T 1vl8_A 85 EVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV 164 (267)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhcc
Confidence 6666654 79999999997542 246788999999999999988753 1 24579999999763 11
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. +....|...+... ..+++.++.+.. ..|+++.+++||.|..
T Consensus 165 ~~----------------------------~~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~T 207 (267)
T 1vl8_A 165 TM----------------------------PNISAYAASKGGV--------ASLTKALAKEWG-RYGIRVNVIAPGWYRT 207 (267)
T ss_dssp CS----------------------------SSCHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEECCBCS
T ss_pred CC----------------------------CCChhHHHHHHHH--------HHHHHHHHHHhc-ccCeEEEEEEeccCcc
Confidence 10 1111111111111 123333333332 2489999999999865
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+... .+... ..... ...... + ...++..+++|++++.++..... ...++++++.++
T Consensus 208 ~~~~---~~~~~----~~~~~----~~~~~~---p--~~~~~~p~dvA~~v~~l~s~~~~--~itG~~i~vdGG 263 (267)
T 1vl8_A 208 KMTE---AVFSD----PEKLD----YMLKRI---P--LGRTGVPEDLKGVAVFLASEEAK--YVTGQIIFVDGG 263 (267)
T ss_dssp TTTH---HHHTC----HHHHH----HHHHTC---T--TSSCBCGGGGHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cccc---ccccC----hHHHH----HHHhhC---C--CCCCcCHHHHHHHHHHHcCcccc--CCcCCeEEECCC
Confidence 3221 11100 00000 000000 1 12367889999999888765321 223678888776
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=134.66 Aligned_cols=220 Identities=14% Similarity=0.151 Sum_probs=134.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||+|+||++++++|++.|. +|++.++.. . .......+.+|++++ +..+
T Consensus 26 l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~---------~-----~~~~~~~~~~Dv~~~------~~~~ 82 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGGAVVTALRAAGA---RVAVADRAV---------A-----GIAADLHLPGDLREA------AYAD 82 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEECSSCC---------T-----TSCCSEECCCCTTSH------HHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH---------H-----HHHhhhccCcCCCCH------HHHH
Confidence 5789999999999999999999999886 566655321 0 011224458899887 5555
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||...+...
T Consensus 83 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~-- 160 (266)
T 3uxy_A 83 GLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPG-- 160 (266)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCC--
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCC--
Confidence 5443 79999999998652 3567889999999999999998321 256799999997654321
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
+....|...+..+ ..+++.++.+... .|+.+.+++||.|.++...
T Consensus 161 --------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~~-~gI~vn~v~PG~v~T~~~~ 205 (266)
T 3uxy_A 161 --------------------------PGHALYCLTKAAL--------ASLTQCMGMDHAP-QGIRINAVCPNEVNTPMLR 205 (266)
T ss_dssp --------------------------TTBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEESSBCCHHHH
T ss_pred --------------------------CCChHHHHHHHHH--------HHHHHHHHHHhhh-cCcEEEEEeeCCCcchHhh
Confidence 1111122111111 1233444433332 4899999999999764321
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. +.............. ........+..++|+|++++.++..... --.++++++.++
T Consensus 206 ~~--~~~~~~~~~~~~~~~---------~~~~p~~r~~~pedvA~~v~~L~s~~~~--~itG~~i~vdGG 262 (266)
T 3uxy_A 206 TG--FAKRGFDPDRAVAEL---------GRTVPLGRIAEPEDIADVVLFLASDAAR--YLCGSLVEVNGG 262 (266)
T ss_dssp HH--HHHTTCCHHHHHHHH---------HTTSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hh--hhcccccchHHHHHH---------HhcCCCCCCcCHHHHHHHHHHHhCchhc--CCcCCEEEECcC
Confidence 00 000000000000000 0111123567899999999988765432 234689999887
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-13 Score=133.77 Aligned_cols=123 Identities=19% Similarity=0.138 Sum_probs=91.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++|+|+||||+|+||++++++|++.|. +|+++.+.. .+.+.+.... ...++.++.+|++++ +
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~ 92 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRGC---KVIVNYANSTESAEEVVAAIKK-----NGSDAACVKANVGVV------E 92 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------H
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCchHHHHHHHHHHHH-----hCCCeEEEEcCCCCH------H
Confidence 5789999999999999999999999876 455543321 2222221110 234788999999987 6
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeecee
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v 244 (554)
+.+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++++... .+..++|++||...
T Consensus 93 ~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~ 167 (283)
T 1g0o_A 93 DIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITG 167 (283)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 6555543 79999999997643 3578899999999999999999763 34579999999754
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-13 Score=133.24 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=137.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+. ...++.++.+|++++ +.
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~---~Vi~~~r~~~~~~~~~~~--------~~~~~~~~~~Dl~~~------~~ 90 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGL---GVVIADLAAEKGKALADE--------LGNRAEFVSTNVTSE------DS 90 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH--------HCTTEEEEECCTTCH------HH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHH--------hCCceEEEEcCCCCH------HH
Confidence 6789999999999999999999999886 45555432 22222222 235789999999987 76
Q ss_pred HHHHhc------CccEEEEcCCCCC-------------chhhHHHHHHHhchHHHHHHHHHHHc---------CCCceEE
Q 042694 186 ADVIAK------EVDVIVNSAANTT-------------FDERYDIAIDINTRGPCRLMEFAKQC---------NKLKLFV 237 (554)
Q Consensus 186 ~~~l~~------~vdiViH~AA~v~-------------~~~~~~~~~~~Nv~gt~~ll~la~~~---------~~~k~~v 237 (554)
.+.+++ .+|++||+||... -.+.++..+++|+.|+.++++++... .+-.++|
T Consensus 91 v~~~~~~~~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv 170 (281)
T 3ppi_A 91 VLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALV 170 (281)
T ss_dssp HHHHHHHHTTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 666654 6899999955321 12357899999999999999988642 1335899
Q ss_pred EEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEE
Q 042694 238 QVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVV 317 (554)
Q Consensus 238 ~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~ 317 (554)
++||...+... +....|...+..+ ..+++.++.+... .|+.+.
T Consensus 171 ~isS~~~~~~~----------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~~-~gi~v~ 213 (281)
T 3ppi_A 171 LTASIAGYEGQ----------------------------IGQTAYAAAKAGV--------IGLTIAAARDLSS-AGIRVN 213 (281)
T ss_dssp EECCGGGTSCC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEE
T ss_pred EEecccccCCC----------------------------CCCcccHHHHHHH--------HHHHHHHHHHHhh-cCeEEE
Confidence 99998664321 1111122111111 1244445444433 489999
Q ss_pred EEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEe
Q 042694 318 IIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQI 397 (554)
Q Consensus 318 I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~ 397 (554)
.++||.|..+....... ........ .......+..++++|++++.++.... ..++++++
T Consensus 214 ~v~PG~v~T~~~~~~~~---------~~~~~~~~--------~~~~~~~~~~pedvA~~v~~l~s~~~----~tG~~i~v 272 (281)
T 3ppi_A 214 TIAPGTMKTPIMESVGE---------EALAKFAA--------NIPFPKRLGTPDEFADAAAFLLTNGY----INGEVMRL 272 (281)
T ss_dssp EEEECSBCCHHHHTTCH---------HHHHHHHH--------TCCSSSSCBCHHHHHHHHHHHHHCSS----CCSCEEEE
T ss_pred EEecCcCCchhhhcccH---------HHHHHHHh--------cCCCCCCCCCHHHHHHHHHHHHcCCC----cCCcEEEE
Confidence 99999986532211100 00000000 00011346789999999998886432 34689999
Q ss_pred eCC
Q 042694 398 ASS 400 (554)
Q Consensus 398 ~~~ 400 (554)
.++
T Consensus 273 dGG 275 (281)
T 3ppi_A 273 DGA 275 (281)
T ss_dssp STT
T ss_pred CCC
Confidence 877
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=132.65 Aligned_cols=125 Identities=13% Similarity=0.166 Sum_probs=91.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ...++.++.+|++++ ++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~ 70 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGT---AIALLDMNREALEKAEASVRE-----KGVEARSYVCDVTSE------EA 70 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHT-----TTSCEEEEECCTTCH------HH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEecCCCH------HH
Confidence 4689999999999999999999999886 45555432 22222222211 134688999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCC-C---c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANT-T---F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v-~---~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
.+.+.+ ++|++||+||.. . + .+.++..+++|+.|+.++++.+... .+..++|++||...+.
T Consensus 71 ~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 149 (262)
T 1zem_A 71 VIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK 149 (262)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc
Confidence 665554 799999999975 2 1 3467889999999999999988652 2456999999976543
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-13 Score=132.72 Aligned_cols=221 Identities=17% Similarity=0.079 Sum_probs=135.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCC----CCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCE----NNLG 180 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~----~~lG 180 (554)
+++|+|+||||+|+||++++++|++.|. +|+++++. ..+.+.+... .....++.++.+|+++ +
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G~---~V~~~~r~~~~~~~~~~~~l~----~~~~~~~~~~~~Dv~~~~~~~--- 90 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTGY---RVVIHYHNSAEAAVSLADELN----KERSNTAVVCQADLTNSNVLP--- 90 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHTC---EEEEEESSCHHHHHHHHHHHH----HHSTTCEEEEECCCSCSTTHH---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---eEEEEeCCchHHHHHHHHHHH----hhcCCceEEEEeecCCccCCH---
Confidence 5789999999999999999999999886 45555432 2222222211 0123578899999998 5
Q ss_pred CCHHHHHHHhc-------CccEEEEcCCCCC---c--------------hhhHHHHHHHhchHHHHHHHHHHHc-C--C-
Q 042694 181 LEEDLADVIAK-------EVDVIVNSAANTT---F--------------DERYDIAIDINTRGPCRLMEFAKQC-N--K- 232 (554)
Q Consensus 181 Ls~~~~~~l~~-------~vdiViH~AA~v~---~--------------~~~~~~~~~~Nv~gt~~ll~la~~~-~--~- 232 (554)
++.+.+.+ .+|++||+||... + .+.++..+++|+.|+..+++.+... . +
T Consensus 91 ---~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~ 167 (288)
T 2x9g_A 91 ---ASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNP 167 (288)
T ss_dssp ---HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC-----
T ss_pred ---HHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC
Confidence 55555544 7999999999643 1 2356788999999999999988653 1 1
Q ss_pred -----CceEEEEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhh
Q 042694 233 -----LKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGL 307 (554)
Q Consensus 233 -----~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~ 307 (554)
..++|++||...+... +....|...+..+ ..+++.++.+
T Consensus 168 ~~~~~~g~iv~isS~~~~~~~----------------------------~~~~~Y~asKaa~--------~~l~~~la~e 211 (288)
T 2x9g_A 168 NCTSSNLSIVNLCDAMVDQPC----------------------------MAFSLYNMGKHAL--------VGLTQSAALE 211 (288)
T ss_dssp ---CCCEEEEEECCTTTTSCC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHH
T ss_pred CCCCCCeEEEEEecccccCCC----------------------------CCCchHHHHHHHH--------HHHHHHHHHH
Confidence 4589999997654321 1111121111111 1244444444
Q ss_pred hhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCccccc-chhhHHHHHHHHHHHHhcc
Q 042694 308 GLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDV-VPADMVVNATLAAIAQHGM 386 (554)
Q Consensus 308 ~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~-vpVD~va~aii~~~~~~~~ 386 (554)
... .|+.+.+++||.|.++. ...+... .. ..... +- ..+ ...+++|++++.++.....
T Consensus 212 ~~~-~gI~vn~v~PG~v~t~~-~~~~~~~------~~--------~~~~~---p~--~r~~~~pedvA~~v~~l~s~~~~ 270 (288)
T 2x9g_A 212 LAP-YGIRVNGVAPGVSLLPV-AMGEEEK------DK--------WRRKV---PL--GRREASAEQIADAVIFLVSGSAQ 270 (288)
T ss_dssp HGG-GTEEEEEEEESSCSCCT-TSCHHHH------HH--------HHHTC---TT--TSSCCCHHHHHHHHHHHHSGGGT
T ss_pred hhc-cCeEEEEEEeccccCcc-ccChHHH------HH--------HHhhC---CC--CCCCCCHHHHHHHHHHHhCcccc
Confidence 333 48999999999997654 1100000 00 00000 10 123 5789999999988764321
Q ss_pred cCCCCCeEEEeeCC
Q 042694 387 IQKPDINVYQIASS 400 (554)
Q Consensus 387 ~~~~~~~vyn~~~~ 400 (554)
...+.++++.++
T Consensus 271 --~itG~~i~vdGG 282 (288)
T 2x9g_A 271 --YITGSIIKVDGG 282 (288)
T ss_dssp --TCCSCEEEESTT
T ss_pred --CccCCEEEECcc
Confidence 234678888766
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=130.76 Aligned_cols=207 Identities=14% Similarity=0.166 Sum_probs=129.1
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|+|+||||||+||++++++|++.|. +|+++++..- . .......+.+|++++ ++.+.
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~---~V~~~~r~~~--------~-----~~~~~~~~~~D~~~~------~~~~~ 59 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGY---TVLNIDLSAN--------D-----QADSNILVDGNKNWT------EQEQS 59 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCC--------T-----TSSEEEECCTTSCHH------HHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEecCcc--------c-----cccccEEEeCCCCCH------HHHHH
Confidence 468999999999999999999999875 5555543210 0 112456788999987 66655
Q ss_pred Hhc---------CccEEEEcCCCCC--------chhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecccccc
Q 042694 189 IAK---------EVDVIVNSAANTT--------FDERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 189 l~~---------~vdiViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~ 250 (554)
+.+ ++|+|||+||... ..+.++..+++|+.|+.++++.+... .+-.++|++||...+...
T Consensus 60 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-- 137 (236)
T 1ooe_A 60 ILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPT-- 137 (236)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC--
T ss_pred HHHHHHHHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCC--
Confidence 543 7999999999643 13467889999999999999998763 122489999997654321
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh-hcCCCcEEEEccceeeeccc
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL-ERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~-~~~glp~~I~Rp~~V~g~~~ 329 (554)
+....|...+... ..+++.++.+.. ...|+.+.++|||.|.++..
T Consensus 138 --------------------------~~~~~Y~~sK~a~--------~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~ 183 (236)
T 1ooe_A 138 --------------------------PSMIGYGMAKAAV--------HHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMN 183 (236)
T ss_dssp --------------------------TTBHHHHHHHHHH--------HHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHH
T ss_pred --------------------------CCcHHHHHHHHHH--------HHHHHHHHHHhcccCCCeEEEEEecCcccCcch
Confidence 1111111111111 123333333322 14579999999999866421
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
. ..... .....++|.+++|++++..+..... ....+.++++.++
T Consensus 184 ~---~~~~~-----------------------~~~~~~~~~~dvA~~i~~~l~s~~~-~~~~G~~~~v~gg 227 (236)
T 1ooe_A 184 R---KWMPN-----------------------ADHSSWTPLSFISEHLLKWTTETSS-RPSSGALLKITTE 227 (236)
T ss_dssp H---HHSTT-----------------------CCGGGCBCHHHHHHHHHHHHHCGGG-CCCTTCEEEEEEE
T ss_pred h---hcCCC-----------------------ccccccCCHHHHHHHHHHHHcCCCc-ccccccEEEEecC
Confidence 1 00000 0012357789999999855533222 1234678887765
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-13 Score=132.71 Aligned_cols=237 Identities=16% Similarity=0.109 Sum_probs=141.8
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-----------hHHHHHHHcCCchhhhccCcEEEEEccCC
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-----------LFKCLKQTYGKSYQAFMLSKLVPAVGNVC 175 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-----------~~~~l~~~~~~~~~~~~~~kv~~v~GDl~ 175 (554)
.+++|+++||||+|.||+++++.|++.|. +|++++.. ..+.+.+.... ......++.++.+|++
T Consensus 25 ~l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dv~ 99 (299)
T 3t7c_A 25 KVEGKVAFITGAARGQGRSHAITLAREGA---DIIAIDVCKQLDGVKLPMSTPDDLAETVRQ--VEALGRRIIASQVDVR 99 (299)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECCSCCTTCCSCCCCHHHHHHHHHH--HHHTTCCEEEEECCTT
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEecccccccccccccCHHHHHHHHHH--HHhcCCceEEEECCCC
Confidence 36789999999999999999999999886 45544321 01222221110 0112457899999999
Q ss_pred CCCCCCCHHHHHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc----CCCceE
Q 042694 176 ENNLGLEEDLADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC----NKLKLF 236 (554)
Q Consensus 176 ~~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~ 236 (554)
++ ++.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... ++..++
T Consensus 100 ~~------~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~I 173 (299)
T 3t7c_A 100 DF------DAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSI 173 (299)
T ss_dssp CH------HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEE
T ss_pred CH------HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEE
Confidence 87 66666654 79999999996532 3467899999999999999987542 235689
Q ss_pred EEEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcE
Q 042694 237 VQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPV 316 (554)
Q Consensus 237 v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~ 316 (554)
|++||....... +....|...+..+ ..+++.++.+... .|+.+
T Consensus 174 v~isS~~~~~~~----------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~~-~gI~v 216 (299)
T 3t7c_A 174 VFTSSIGGLRGA----------------------------ENIGNYIASKHGL--------HGLMRTMALELGP-RNIRV 216 (299)
T ss_dssp EEECCGGGTSCC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEE
T ss_pred EEECChhhccCC----------------------------CCcchHHHHHHHH--------HHHHHHHHHHhcc-cCcEE
Confidence 999997654321 1111122112111 1244444444333 48999
Q ss_pred EEEccceeeecccCCcccc--ccCCCCccceeeeec--cceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCC
Q 042694 317 VIIRPSVIESTCKEPFSGW--MEGNRMMDPIILYYG--KGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDI 392 (554)
Q Consensus 317 ~I~Rp~~V~g~~~~p~~g~--~~~~~~~~~i~~~~~--~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~ 392 (554)
..++||.|..+.....+.+ ... ....+...... ....... + ..+...+|+|++++.++..... --.+
T Consensus 217 n~v~PG~v~T~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---p---~r~~~pedvA~~v~fL~s~~a~--~itG 287 (299)
T 3t7c_A 217 NIVCPSSVATPMLLNEPTYRMFRP-DLENPTVEDFQVASRQMHVL---P---IPYVEPADISNAILFLVSDDAR--YITG 287 (299)
T ss_dssp EEEEESCBSSTTTSSHHHHHHHCT-TSSSCCHHHHHHHHHHHSSS---S---CSCBCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred EEEecCCccCccccccchhhhhhh-hhccchhhHHHHHhhhhccc---C---cCCCCHHHHHHHHHHHhCcccc--cCcC
Confidence 9999999976543211100 000 00000000000 0000000 1 3467889999999988765432 2346
Q ss_pred eEEEeeCC
Q 042694 393 NVYQIASS 400 (554)
Q Consensus 393 ~vyn~~~~ 400 (554)
+++++.++
T Consensus 288 ~~i~vdGG 295 (299)
T 3t7c_A 288 VSLPVDGG 295 (299)
T ss_dssp CEEEESTT
T ss_pred CEEeeCCC
Confidence 89998876
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=133.76 Aligned_cols=238 Identities=13% Similarity=0.092 Sum_probs=138.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|++.++. ..+...++... .....++..+.+|++++ +.
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~~~D~~~~------~~ 75 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGA---NVLINGRREENVNETIKEIRA---QYPDAILQPVVADLGTE------QG 75 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHHH---HCTTCEEEEEECCTTSH------HH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh---hCCCceEEEEecCCCCH------HH
Confidence 5689999999999999999999999886 45555432 12222221110 00134678899999987 66
Q ss_pred HHHHhc---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccccee
Q 042694 186 ADVIAK---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRGKV 252 (554)
Q Consensus 186 ~~~l~~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~~i 252 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||...+...
T Consensus 76 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 151 (267)
T 3t4x_A 76 CQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPS---- 151 (267)
T ss_dssp HHHHHHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCC----
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCC----
Confidence 776665 79999999997542 3467788999999988777766431 355799999997654321
Q ss_pred eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc
Q 042694 253 MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF 332 (554)
Q Consensus 253 ~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~ 332 (554)
+....|...+... ..+++.++.+.. ..|+.+..+.||.|..+...
T Consensus 152 ------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~-~~gi~vn~v~PG~v~t~~~~-- 196 (267)
T 3t4x_A 152 ------------------------QEMAHYSATKTMQ--------LSLSRSLAELTT-GTNVTVNTIMPGSTLTEGVE-- 196 (267)
T ss_dssp ------------------------TTCHHHHHHHHHH--------HHHHHHHHHHTT-TSEEEEEEEEECCBCCHHHH--
T ss_pred ------------------------CcchHHHHHHHHH--------HHHHHHHHHHhC-CCCeEEEEEeCCeecCccHH--
Confidence 1111121111111 123344443332 34799999999998654211
Q ss_pred cccccCCCCccce-eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 333 SGWMEGNRMMDPI-ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 333 ~g~~~~~~~~~~i-~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.+.......... ........+... ........+..++|+|++++.++..... --.++++++.++
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~pedvA~~v~fL~s~~~~--~itG~~i~vdGG 261 (267)
T 3t4x_A 197 -TMLNSLYPNEQLTIEEAEKRFMKEN-RPTSIIQRLIRPEEIAHLVTFLSSPLSS--AINGSALRIDGG 261 (267)
T ss_dssp -HHHHHSSTTSCCCHHHHHHHHHHHH-CTTCSSCSCBCTHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred -HHHhhcCcccCCCHHHHHHHHhhcc-CCcccccCccCHHHHHHHHHHHcCcccc--CccCCeEEECCC
Confidence 111000000000 000000000000 0000123578899999999888764332 234689999887
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-13 Score=131.80 Aligned_cols=220 Identities=15% Similarity=0.094 Sum_probs=134.7
Q ss_pred ccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcch-----hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCC
Q 042694 108 LKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINAE-----LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLG 180 (554)
Q Consensus 108 ~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~~-----~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lG 180 (554)
+++|+|+||||+ |+||+++++.|++.|. +|+++++. ..+.+.+.. .++.++.+|++++
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~---~V~~~~r~~~~~~~~~~l~~~~---------~~~~~~~~D~~~~--- 68 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA---TLAFTYLNESLEKRVRPIAQEL---------NSPYVYELDVSKE--- 68 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTC---EEEEEESSTTTHHHHHHHHHHT---------TCCCEEECCTTCH---
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhc---------CCcEEEEcCCCCH---
Confidence 467899999999 9999999999999876 45555432 122222211 2367899999987
Q ss_pred CCHHHHHHHhc-------CccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEee
Q 042694 181 LEEDLADVIAK-------EVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVST 241 (554)
Q Consensus 181 Ls~~~~~~l~~-------~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST 241 (554)
+..+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++++... .+-.++|++||
T Consensus 69 ---~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 145 (275)
T 2pd4_A 69 ---EHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY 145 (275)
T ss_dssp ---HHHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 66666654 68999999997542 2467889999999999999999753 11258999999
Q ss_pred ceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcc
Q 042694 242 AYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRP 321 (554)
Q Consensus 242 ~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp 321 (554)
....... +....|...+... ..+++.++.+.. ..|+.+.+++|
T Consensus 146 ~~~~~~~----------------------------~~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~P 188 (275)
T 2pd4_A 146 LGSTKYM----------------------------AHYNVMGLAKAAL--------ESAVRYLAVDLG-KHHIRVNALSA 188 (275)
T ss_dssp GGGTSBC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHH-TTTCEEEEEEE
T ss_pred chhcCCC----------------------------CCchhhHHHHHHH--------HHHHHHHHHHhh-hcCeEEEEEee
Confidence 6543221 1111121111111 123333433332 35899999999
Q ss_pred ceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 322 SVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 322 ~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|.|.++.....+.. ......+.. .. + ...+...+++|++++.++..... ...+.++++.++
T Consensus 189 G~v~T~~~~~~~~~-------~~~~~~~~~-~~------p--~~~~~~p~dva~~~~~l~s~~~~--~~tG~~~~vdgg 249 (275)
T 2pd4_A 189 GPIRTLASSGIADF-------RMILKWNEI-NA------P--LRKNVSLEEVGNAGMYLLSSLSS--GVSGEVHFVDAG 249 (275)
T ss_dssp CCCCCTTGGGSTTH-------HHHHHHHHH-HS------T--TSSCCCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred Cccccchhhhcccc-------HHHHHHHHh-cC------C--cCCCCCHHHHHHHHHHHhCcccc--CCCCCEEEECCC
Confidence 99976432211110 000000000 00 0 01256789999999988754321 224678888776
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-13 Score=133.06 Aligned_cols=223 Identities=15% Similarity=0.110 Sum_probs=135.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+. ..++.++.+|++++ ++
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~---------~~~~~~~~~Dv~d~------~~ 68 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGA---RVVICDKDESGGRALEQE---------LPGAVFILCDVTQE------DD 68 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH---------CTTEEEEECCTTSH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHH---------hcCCeEEEcCCCCH------HH
Confidence 5689999999999999999999999886 45555432 12222222 12478899999987 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++++... .+..++|++||.......
T Consensus 69 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~ 148 (270)
T 1yde_A 69 VKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQ 148 (270)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCC
Confidence 666654 79999999997532 2457889999999999999988642 124699999997543211
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. ....|...+... ..+++.++.+.. ..|+++.++|||.|.++.
T Consensus 149 ~----------------------------~~~~Y~asKaa~--------~~~~~~la~e~~-~~gi~vn~v~Pg~v~t~~ 191 (270)
T 1yde_A 149 A----------------------------QAVPYVATKGAV--------TAMTKALALDES-PYGVRVNCISPGNIWTPL 191 (270)
T ss_dssp T----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEECSBCCHH
T ss_pred C----------------------------CCcccHHHHHHH--------HHHHHHHHHHhh-hhCcEEEEEEeCccccch
Confidence 0 000111111111 123333333322 358999999999998753
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.......... ....+ ..+. ... + .-.+...+|++++++.++.. . .--.++++++.++
T Consensus 192 ~~~~~~~~~~---~~~~~---~~~~-~~~---p--~~r~~~p~dva~~v~~L~s~-~--~~itG~~i~vdGG 248 (270)
T 1yde_A 192 WEELAALMPD---PRASI---REGM-LAQ---P--LGRMGQPAEVGAAAVFLASE-A--NFCTGIELLVTGG 248 (270)
T ss_dssp HHHHHTTSSS---HHHHH---HHHH-HTS---T--TSSCBCHHHHHHHHHHHHHH-C--TTCCSCEEEESTT
T ss_pred hhhhhhcccc---hHHHH---HHHh-hcC---C--CCCCcCHHHHHHHHHHHccc-C--CCcCCCEEEECCC
Confidence 2110000000 00000 0000 000 1 11356789999998887764 2 1234678998887
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=131.82 Aligned_cols=222 Identities=13% Similarity=0.090 Sum_probs=137.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||||+||++++++|++.|. +|+++++.. +++.+.. ...++..+.+|++++ ++.+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~-~~~~~~~-------~~~~~~~~~~D~~~~------~~~~ 66 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGA---KVIATDINE-SKLQELE-------KYPGIQTRVLDVTKK------KQID 66 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH-HHHGGGG-------GSTTEEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH-HHHHHHH-------hccCceEEEeeCCCH------HHHH
Confidence 4678999999999999999999999875 556555431 2222111 113788999999987 6666
Q ss_pred HHh---cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccceeec
Q 042694 188 VIA---KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRGKVME 254 (554)
Q Consensus 188 ~l~---~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~~i~E 254 (554)
.+. .++|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..++|++||........
T Consensus 67 ~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 141 (246)
T 2ag5_A 67 QFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGV----- 141 (246)
T ss_dssp HHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCC-----
T ss_pred HHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCC-----
Confidence 554 479999999997643 3567888999999999999987531 2567999999976543210
Q ss_pred cccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 255 KPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
+.. ..| ..+|. +++.++.+.. ..|+++.++|||.|.++...
T Consensus 142 ----------------------~~~------~~Y------~~sK~a~~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~~~ 186 (246)
T 2ag5_A 142 ----------------------VNR------CVY------STTKAAVIGLTKSVAADFI-QQGIRCNCVCPGTVDTPSLQ 186 (246)
T ss_dssp ----------------------TTB------HHH------HHHHHHHHHHHHHHHHHHG-GGTEEEEEEEESCEECHHHH
T ss_pred ----------------------CCC------ccH------HHHHHHHHHHHHHHHHHhh-hcCcEEEEEeeCcCcCcchh
Confidence 000 112 22232 3333333322 34899999999999875321
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
. .............. ..... + ...++..+|+|++++.++..... ...++++++.++
T Consensus 187 ~---~~~~~~~~~~~~~~----~~~~~---~--~~~~~~~~dvA~~v~~l~s~~~~--~~tG~~i~vdgG 242 (246)
T 2ag5_A 187 E---RIQARGNPEEARND----FLKRQ---K--TGRFATAEEIAMLCVYLASDESA--YVTGNPVIIDGG 242 (246)
T ss_dssp H---HHHHSSSHHHHHHH----HHHTC---T--TSSCEEHHHHHHHHHHHHSGGGT--TCCSCEEEECTT
T ss_pred h---hhhcccCcHHHHHH----HHhcC---C--CCCCCCHHHHHHHHHHHhCcccc--CCCCCEEEECCC
Confidence 1 00000000000000 00000 1 12367899999999988754321 224678888776
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=131.56 Aligned_cols=229 Identities=16% Similarity=0.086 Sum_probs=135.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ...++.++.+|++++ ++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~v~ 67 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGF---AVAIADYNDATAKAVASEINQ-----AGGHAVAVKVDVSDR------DQVF 67 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTSH------HHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEecCCCH------HHHH
Confidence 57899999999999999999999886 45555432 12222222110 134688999999987 7776
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CC-CceEEEEeeceeccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NK-LKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~v~vST~~v~~~~~ 249 (554)
.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+ ..++|++||.......
T Consensus 68 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 146 (256)
T 1geg_A 68 AAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN- 146 (256)
T ss_dssp HHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC-
Confidence 6665 89999999996532 3467889999999999988887642 13 5699999997553321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
+....|...+... ..+++.++.+.. ..|+++.++|||.|.++..
T Consensus 147 ---------------------------~~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~t~~~ 190 (256)
T 1geg_A 147 ---------------------------PELAVYSSSKFAV--------RGLTQTAARDLA-PLGITVNGYCPGIVKTPMW 190 (256)
T ss_dssp ---------------------------TTBHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBSSHHH
T ss_pred ---------------------------CCchhHHHHHHHH--------HHHHHHHHHHHH-HcCeEEEEEEECCCccchh
Confidence 0011111111111 123344443332 2489999999999976432
Q ss_pred CCccc-cccCCCC-ccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSG-WMEGNRM-MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g-~~~~~~~-~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..... +...... .......+.. .. + ...+...+|+|++++.++..... ...++++++.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~-~~------p--~~r~~~p~dvA~~v~~l~s~~~~--~~tG~~i~vdGG 252 (256)
T 1geg_A 191 AEIDRQVSEAAGKPLGYGTAEFAK-RI------T--LGRLSEPEDVAACVSYLASPDSD--YMTGQSLLIDGG 252 (256)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHT-TC------T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESSS
T ss_pred hhhhhhccccccCChHHHHHHHHh-cC------C--CCCCcCHHHHHHHHHHHhCcccc--CCCCCEEEeCCC
Confidence 10000 0000000 0000000000 00 1 12467899999999888754321 224678888776
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-13 Score=131.25 Aligned_cols=213 Identities=15% Similarity=0.160 Sum_probs=131.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||+|+||++++++|++.|. +|+++++.. . ..+.+..+.+|++++ ++.+
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~---------~-----~~~~~~~~~~D~~~~------~~~~ 69 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADGH---KVAVTHRGS---------G-----APKGLFGVEVDVTDS------DAVD 69 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSS---------C-----CCTTSEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCh---------H-----HHHHhcCeeccCCCH------HHHH
Confidence 5689999999999999999999999875 455554321 0 011222488999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||........
T Consensus 70 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~- 148 (247)
T 1uzm_A 70 RAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIG- 148 (247)
T ss_dssp HHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCC-
Confidence 6554 68999999997542 3568899999999999999988541 3567999999975532210
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
....|...+... ..+++.++.+.. ..|+++.+++||.|..+...
T Consensus 149 ---------------------------~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~t~~~~ 192 (247)
T 1uzm_A 149 ---------------------------NQANYAASKAGV--------IGMARSIARELS-KANVTANVVAPGYIDTDMTR 192 (247)
T ss_dssp ---------------------------CCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBCCHHHH
T ss_pred ---------------------------CChhHHHHHHHH--------HHHHHHHHHHhh-hcCcEEEEEEeCCCcccchh
Confidence 000111111111 123444444332 24899999999999653211
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+. ... ....... + ...+++++|+|++++.++..... ...++++++.++
T Consensus 193 ~~~~---------~~~----~~~~~~~---p--~~~~~~~~dvA~~~~~l~s~~~~--~~~G~~i~vdgG 242 (247)
T 1uzm_A 193 ALDE---------RIQ----QGALQFI---P--AKRVGTPAEVAGVVSFLASEDAS--YISGAVIPVDGG 242 (247)
T ss_dssp HSCH---------HHH----HHHGGGC---T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hcCH---------HHH----HHHHhcC---C--CCCCcCHHHHHHHHHHHcCcccc--CCcCCEEEECCC
Confidence 0000 000 0000000 1 12467899999999888764321 224688998876
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-13 Score=132.54 Aligned_cols=223 Identities=14% Similarity=0.095 Sum_probs=140.0
Q ss_pred ccCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+++|+|+||||+| +||++++++|++.|. +|++.++ ...+.+.+... ...++.++.+|++++
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~---~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~Dv~d~------ 92 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA---EVALTYLSETFKKRVDPLAE------SLGVKLTVPCDVSDA------ 92 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTTC---EEEEEESSGGGHHHHHHHHH------HHTCCEEEECCTTCH------
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHHHH------hcCCeEEEEcCCCCH------
Confidence 5789999999998 999999999999886 4555432 22222222211 113467899999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeecee
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v 244 (554)
++.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||...
T Consensus 93 ~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~ 172 (296)
T 3k31_A 93 ESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGA 172 (296)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGG
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhh
Confidence 77766654 68999999997642 2467889999999999999998753 23358999999765
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcccee
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
.... +....|...+..+. .+++.++.+.. ..|+.+..++||.|
T Consensus 173 ~~~~----------------------------~~~~~Y~asKaal~--------~l~~~la~e~~-~~gIrvn~v~PG~v 215 (296)
T 3k31_A 173 EKVV----------------------------PHYNVMGVCKAALE--------ASVKYLAVDLG-KQQIRVNAISAGPV 215 (296)
T ss_dssp TSCC----------------------------TTTTHHHHHHHHHH--------HHHHHHHHHHH-TTTEEEEEEEECCC
T ss_pred ccCC----------------------------CCchhhHHHHHHHH--------HHHHHHHHHHh-hcCcEEEEEEECCC
Confidence 4321 11112222222111 23444444433 34899999999999
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+......... ........ .. + ...+...+|+|++++.++..... --.++++++.++
T Consensus 216 ~T~~~~~~~~~~-------~~~~~~~~-~~------p--~~r~~~pedvA~~v~fL~s~~a~--~itG~~i~vdGG 273 (296)
T 3k31_A 216 RTLASSGISDFH-------YILTWNKY-NS------P--LRRNTTLDDVGGAALYLLSDLGR--GTTGETVHVDCG 273 (296)
T ss_dssp CCSSCCSCHHHH-------HHHHHHHH-HS------T--TSSCCCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cCchhhcccchH-------HHHHHHHh-cC------C--CCCCCCHHHHHHHHHHHcCCccC--CccCCEEEECCC
Confidence 764432211100 00000000 00 0 12356779999999988765332 234689999887
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-13 Score=127.69 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=88.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|+||||+|+||++++++|++.|.+ |+++++. .+++.+.... ...++.++.+|++++ +..+.+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~---V~~~~r~-~~~~~~~~~~-----~~~~~~~~~~D~~~~------~~v~~~ 65 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKA---TYLTGRS-ESKLSTVTNC-----LSNNVGYRARDLASH------QEVEQL 65 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCC---EEEEESC-HHHHHHHHHT-----CSSCCCEEECCTTCH------HHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCE---EEEEeCC-HHHHHHHHHH-----HhhccCeEeecCCCH------HHHHHH
Confidence 468999999999999999999998864 4544432 1222222111 235778899999988 778877
Q ss_pred hcCc----cEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-C-CCceEEEEeeceecc
Q 042694 190 AKEV----DVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-N-KLKLFVQVSTAYVNG 246 (554)
Q Consensus 190 ~~~v----diViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~-~~k~~v~vST~~v~~ 246 (554)
.+++ |+|||+||.... .+.++..+++|+.|+..+++.+... . +-.++|++||...+.
T Consensus 66 ~~~~~~~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~ 135 (230)
T 3guy_A 66 FEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ 135 (230)
T ss_dssp HHSCSSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS
T ss_pred HHHHhhcCCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC
Confidence 7654 899999997532 3467889999999999999988653 1 122899999976543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-13 Score=131.77 Aligned_cols=237 Identities=15% Similarity=0.037 Sum_probs=141.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---------------hHHHHHHHcCCchhhhccCcEEEEEc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---------------LFKCLKQTYGKSYQAFMLSKLVPAVG 172 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---------------~~~~l~~~~~~~~~~~~~~kv~~v~G 172 (554)
+++|+|+||||+|.||++++++|++.|. +|++++.. ..+++.+.... ......++.++.+
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 83 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEGA---DIIAVDICKPIRAGVVDTAIPASTPEDLAETADL--VKGHNRRIVTAEV 83 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHH--HHTTTCCEEEEEC
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeccccccccccccccccCCHHHHHHHHHH--HhhcCCceEEEEc
Confidence 5789999999999999999999999886 45544321 02222221110 0112457899999
Q ss_pred cCCCCCCCCCHHHHHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc----CCC
Q 042694 173 NVCENNLGLEEDLADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC----NKL 233 (554)
Q Consensus 173 Dl~~~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~ 233 (554)
|++++ ++.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... ++-
T Consensus 84 Dv~~~------~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~ 157 (286)
T 3uve_A 84 DVRDY------DALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRG 157 (286)
T ss_dssp CTTCH------HHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCH------HHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC
Confidence 99988 77766654 79999999997432 2467889999999999999988642 124
Q ss_pred ceEEEEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCC
Q 042694 234 KLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGD 313 (554)
Q Consensus 234 k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~g 313 (554)
.++|++||....... +....|...+..+ ..+++.++.+... .|
T Consensus 158 g~iv~isS~~~~~~~----------------------------~~~~~Y~asKaa~--------~~~~~~la~e~~~-~g 200 (286)
T 3uve_A 158 GSIILTSSVGGLKAY----------------------------PHTGHYVAAKHGV--------VGLMRAFGVELGQ-HM 200 (286)
T ss_dssp EEEEEECCGGGTSCC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GT
T ss_pred cEEEEECchhhccCC----------------------------CCccHHHHHHHHH--------HHHHHHHHHHhcc-cC
Confidence 589999997654321 1111122112111 1244444444333 48
Q ss_pred CcEEEEccceeeecccCCccc---cccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCC
Q 042694 314 IPVVIIRPSVIESTCKEPFSG---WMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKP 390 (554)
Q Consensus 314 lp~~I~Rp~~V~g~~~~p~~g---~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~ 390 (554)
+.+..++||.|..+....... +........+ ..... ... + . ......+...+|+|++++.++..... --
T Consensus 201 I~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~-~-~-~~~p~r~~~p~dvA~~v~fL~s~~a~--~i 272 (286)
T 3uve_A 201 IRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGP--DDMAP-ICQ-M-F-HTLPIPWVEPIDISNAVLFFASDEAR--YI 272 (286)
T ss_dssp EEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCH--HHHHH-HHH-T-T-CSSSCSCBCHHHHHHHHHHHHSGGGT--TC
T ss_pred eEEEEEecCcccCCcccccchhhhccccccccch--hhHHH-HHH-h-h-hccCCCcCCHHHHHHHHHHHcCcccc--CC
Confidence 999999999997643321000 0000000000 00000 000 0 0 00013567889999999888765332 23
Q ss_pred CCeEEEeeCC
Q 042694 391 DINVYQIASS 400 (554)
Q Consensus 391 ~~~vyn~~~~ 400 (554)
.++++++.++
T Consensus 273 tG~~i~vdGG 282 (286)
T 3uve_A 273 TGVTLPIDAG 282 (286)
T ss_dssp CSCEEEESTT
T ss_pred cCCEEeECCc
Confidence 4689998876
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-13 Score=136.44 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=90.4
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-------hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-------LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-------~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
++|+||||||||+||++++++|++.|.+ |+...+. ..+.+.+... ....++.++.+|++++
T Consensus 4 ~~k~vlVTGas~GIG~aia~~L~~~G~~---V~~~~r~~~~r~~~~~~~l~~~~~-----~~~~~~~~~~~Dvtd~---- 71 (324)
T 3u9l_A 4 SKKIILITGASSGFGRLTAEALAGAGHR---VYASMRDIVGRNASNVEAIAGFAR-----DNDVDLRTLELDVQSQ---- 71 (324)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESCTTTTTHHHHHHHHHHHH-----HHTCCEEEEECCTTCH----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEecCcccccCHHHHHHHHHHHH-----hcCCcEEEEEeecCCH----
Confidence 4689999999999999999999998864 4433211 1122222111 1235789999999987
Q ss_pred CHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHH----HHcCCCceEEEEeece
Q 042694 182 EEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFA----KQCNKLKLFVQVSTAY 243 (554)
Q Consensus 182 s~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~v~vST~~ 243 (554)
+..+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+ ++ .+..++|++||..
T Consensus 72 --~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~-~~~g~iV~isS~~ 148 (324)
T 3u9l_A 72 --VSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRR-QKHGLLIWISSSS 148 (324)
T ss_dssp --HHHHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEECCGG
T ss_pred --HHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCEEEEEecch
Confidence 77776665 89999999996532 3467888999999999999998 33 3567999999986
Q ss_pred ec
Q 042694 244 VN 245 (554)
Q Consensus 244 v~ 245 (554)
..
T Consensus 149 ~~ 150 (324)
T 3u9l_A 149 SA 150 (324)
T ss_dssp GT
T ss_pred hc
Confidence 64
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=134.52 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=84.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|+||||||+||++++++|++.|. +|+++++.. .. ... .+.+|++++ +..+.+
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~--------~~-----~~~---~~~~Dl~~~------~~v~~~ 55 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGH---QIVGIDIRD--------AE-----VIA---DLSTAEGRK------QAIADV 55 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSS--------SS-----EEC---CTTSHHHHH------HHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCc--------hh-----hcc---ccccCCCCH------HHHHHH
Confidence 36899999999999999999999876 455554321 00 000 156788876 677777
Q ss_pred hc----CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 190 AK----EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 190 ~~----~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
.+ ++|++||+||......+++..+++|+.|+.++++++... .+..++|++||...+
T Consensus 56 ~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 118 (257)
T 1fjh_A 56 LAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA 118 (257)
T ss_dssp HTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred HHHhCCCCCEEEECCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence 65 459999999987645668999999999999999988632 245799999998776
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=131.27 Aligned_cols=222 Identities=11% Similarity=0.059 Sum_probs=136.3
Q ss_pred cCcEEEEecccccccHHHHHHHHh-hCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILR-TVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~-~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++|+||||||+|+||++++++|++ .+. +|++.+... ....+++..+.+|++++ ++.+
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~---~v~~~~~~~-------------~~~~~~~~~~~~Dv~~~------~~v~ 60 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNH---TVINIDIQQ-------------SFSAENLKFIKADLTKQ------QDIT 60 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTE---EEEEEESSC-------------CCCCTTEEEEECCTTCH------HHHH
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCc---EEEEecccc-------------ccccccceEEecCcCCH------HHHH
Confidence 578999999999999999999998 443 455554320 00235678999999988 7777
Q ss_pred HHhc-----CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecccccceeec
Q 042694 188 VIAK-----EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRGKVME 254 (554)
Q Consensus 188 ~l~~-----~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~~i~E 254 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||...+....
T Consensus 61 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~----- 135 (244)
T 4e4y_A 61 NVLDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKP----- 135 (244)
T ss_dssp HHHHHTTTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCT-----
T ss_pred HHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCC-----
Confidence 7665 79999999997532 3567889999999999999988753 1113899999976543211
Q ss_pred cccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccc
Q 042694 255 KPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSG 334 (554)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g 334 (554)
....|...+... ..+++.++.+.. ..|+++.+++||.|..+.......
T Consensus 136 -----------------------~~~~Y~asKaa~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~T~~~~~~~~ 183 (244)
T 4e4y_A 136 -----------------------NSFAYTLSKGAI--------AQMTKSLALDLA-KYQIRVNTVCPGTVDTDLYRNLIQ 183 (244)
T ss_dssp -----------------------TBHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEESCBCCHHHHHHHH
T ss_pred -----------------------CCchhHHHHHHH--------HHHHHHHHHHHH-HcCeEEEEEecCccCchhhHHHHH
Confidence 111121111111 123344443332 348999999999996643211000
Q ss_pred -cccCCC-CccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 335 -WMEGNR-MMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 335 -~~~~~~-~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
...... ........ . ........+..++|+|++++.++..... .-.++++++.++
T Consensus 184 ~~~~~~~~~~~~~~~~----~-----~~~~p~~r~~~p~dvA~~v~~l~s~~~~--~itG~~i~vdGG 240 (244)
T 4e4y_A 184 KYANNVGISFDEAQKQ----E-----EKEFPLNRIAQPQEIAELVIFLLSDKSK--FMTGGLIPIDGG 240 (244)
T ss_dssp HHHHHHTCCHHHHHHH----H-----HTTSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhhhhcCCCHHHHHHH----H-----hhcCCCCCCcCHHHHHHHHHHHhcCccc--cccCCeEeECCC
Confidence 000000 00000000 0 0111123467899999999988865332 234689998776
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-13 Score=129.64 Aligned_cols=203 Identities=14% Similarity=0.115 Sum_probs=126.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+++||||+|+||++++++|++.|. +|+++++. ..+.+.+..... .....++.++.+|++++ ++
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dv~~~------~~ 73 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY---RVVLIARSKQNLEKVHDEIMRS--NKHVQEPIVLPLDITDC------TK 73 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC---EEEEEESCHHHHHHHHHHHHHH--CTTSCCCEEEECCTTCH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHh--ccccCcceEEeccCCCH------HH
Confidence 4678999999999999999999999886 45555432 222222221100 00125788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||.......
T Consensus 74 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~- 152 (250)
T 3nyw_A 74 ADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGF- 152 (250)
T ss_dssp HHHHHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC--------
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCC-
Confidence 666554 69999999997432 2567889999999999999988431 245699999997553311
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
+....|...+... ..+++.++.+... .|+++..++||.|..+..
T Consensus 153 ---------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~~-~gi~vn~v~PG~v~T~~~ 196 (250)
T 3nyw_A 153 ---------------------------ADGGIYGSTKFAL--------LGLAESLYRELAP-LGIRVTTLCPGWVNTDMA 196 (250)
T ss_dssp ---------------------------CCTTHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEESSBCSHHH
T ss_pred ---------------------------CCCcchHHHHHHH--------HHHHHHHHHHhhh-cCcEEEEEecCcccCchh
Confidence 1111222222211 1244444444333 489999999998854321
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHh
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQH 384 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~ 384 (554)
. .... ......++..+|++++++.++...
T Consensus 197 ~----~~~~----------------------~~~~~~~~~p~dva~~v~~l~s~~ 225 (250)
T 3nyw_A 197 K----KAGT----------------------PFKDEEMIQPDDLLNTIRCLLNLS 225 (250)
T ss_dssp H----HTTC----------------------CSCGGGSBCHHHHHHHHHHHHTSC
T ss_pred h----hcCC----------------------CcccccCCCHHHHHHHHHHHHcCC
Confidence 1 0000 000124678999999999887643
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=126.20 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=88.4
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.+|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+.. ..++..+.+|++++ ++.
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~------~~v 64 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGH---QVSMMGRRYQRLQQQELLL--------GNAVIGIVADLAHH------EDV 64 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH--------GGGEEEEECCTTSH------HHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHh--------cCCceEEECCCCCH------HHH
Confidence 368999999999999999999999886 45555432 222222222 23688999999987 666
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceecc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~ 246 (554)
+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||.....
T Consensus 65 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~ 140 (235)
T 3l6e_A 65 DVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV 140 (235)
T ss_dssp HHHHHHHHHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS
T ss_pred HHHHHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC
Confidence 66654 68999999997542 3567889999999999999988542 1123899999976543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=129.37 Aligned_cols=209 Identities=13% Similarity=0.121 Sum_probs=125.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+... ......+.++.+|++++ ++
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~Dv~d~------~~ 97 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGY---SVVITGRRPDVLDAAAGEIG----GRTGNIVRAVVCDVGDP------DQ 97 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH----HHHSSCEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH----hcCCCeEEEEEcCCCCH------HH
Confidence 5789999999999999999999999886 45555432 2222222221 11123468899999988 76
Q ss_pred HHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---C--CCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---N--KLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~--~~k~~v~vST~~v~ 245 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+... . +-.++|++||....
T Consensus 98 v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~ 177 (281)
T 4dry_A 98 VAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ 177 (281)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhC
Confidence 666654 68999999997432 3568889999999998888877542 1 13589999997553
Q ss_pred ccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 246 GQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 246 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
... +....|...+..+ ..+++.++.+.. ..|+.+..++||.|.
T Consensus 178 ~~~----------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~-~~gI~vn~v~PG~v~ 220 (281)
T 4dry_A 178 TPR----------------------------PNSAPYTATKHAI--------TGLTKSTALDGR-MHDIACGQIDIGNAA 220 (281)
T ss_dssp CCC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEEECBC
T ss_pred CCC----------------------------CCChhHHHHHHHH--------HHHHHHHHHHhc-ccCeEEEEEEECcCc
Confidence 321 1111122222111 123444444333 348999999999986
Q ss_pred ecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhc
Q 042694 326 STCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHG 385 (554)
Q Consensus 326 g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~ 385 (554)
.+....... .... ..+..+ ...+++.+|+|++++.++..+.
T Consensus 221 T~~~~~~~~---------~~~~--~~~~~~--------~~~~~~pedvA~~v~fL~s~~~ 261 (281)
T 4dry_A 221 TDMTARMST---------GVLQ--ANGEVA--------AEPTIPIEHIAEAVVYMASLPL 261 (281)
T ss_dssp C-------C---------EEEC--TTSCEE--------ECCCBCHHHHHHHHHHHHHSCT
T ss_pred Chhhhhhcc---------hhhh--hhhccc--------ccCCCCHHHHHHHHHHHhCCCc
Confidence 533211110 0000 001111 1236788999999999887543
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.6e-13 Score=127.62 Aligned_cols=118 Identities=17% Similarity=0.205 Sum_probs=88.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+.. ..++.++.+|++++ ++.+.
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv~~~------~~v~~ 63 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH---KVIATGRRQERLQELKDEL--------GDNLYIAQLDVRNR------AAIEE 63 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH--------CTTEEEEECCTTCH------HHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHh--------cCceEEEEcCCCCH------HHHHH
Confidence 5799999999999999999999875 45555432 122222221 24788999999987 77777
Q ss_pred Hhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 189 IAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
+.+ ++|++||+||... + .+.++..+++|+.|+..+.+.+... .+..++|++||....
T Consensus 64 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~ 138 (248)
T 3asu_A 64 MLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS 138 (248)
T ss_dssp HHHTSCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhc
Confidence 765 6899999999752 2 2467889999999999999888631 245799999997654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.2e-13 Score=128.93 Aligned_cols=125 Identities=15% Similarity=0.205 Sum_probs=92.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||+|+||++++++|++.|. +|++.++. ..+.+.+.... ...++.++.+|++++ ++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~------~~ 67 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGA---KILLGARRQARIEAIATEIRD-----AGGTALAQVLDVTDR------HS 67 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHHH-----TTCEEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCH------HH
Confidence 3578999999999999999999999886 45555432 22333322211 235788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||.....
T Consensus 68 v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~ 145 (264)
T 3tfo_A 68 VAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS 145 (264)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc
Confidence 666654 79999999997543 3567889999999999888887531 2456999999976543
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.7e-13 Score=130.46 Aligned_cols=130 Identities=17% Similarity=0.176 Sum_probs=95.5
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.+++|+|+||||+|+||++++++|++.+....+|++.++. ..+.+.+.... .....++.++.+|++++ +
T Consensus 30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~~~Dv~d~------~ 100 (287)
T 3rku_A 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQ---EFPNAKVHVAQLDITQA------E 100 (287)
T ss_dssp HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH---HCTTCEEEEEECCTTCG------G
T ss_pred hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHh---hCCCCeEEEEECCCCCH------H
Confidence 3689999999999999999999999987643366665432 22333322211 00135788999999998 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCC--------chhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 185 LADVIAK-------EVDVIVNSAANTT--------FDERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
+.+.+.+ ++|++||+||... -.+.++..+++|+.|+..+++.+... .+..++|++||....
T Consensus 101 ~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~ 179 (287)
T 3rku_A 101 KIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGR 179 (287)
T ss_dssp GHHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhc
Confidence 7777665 5899999999653 13578899999999999999988421 245799999997654
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.8e-13 Score=130.41 Aligned_cols=223 Identities=12% Similarity=0.115 Sum_probs=137.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+.... ..++.++.+|++++ ++
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G~---~V~~~~r~~~~~~~~~~~l~~------~~~~~~~~~Dv~d~------~~ 91 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGA---RVFICARDAEACADTATRLSA------YGDCQAIPADLSSE------AG 91 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHTT------SSCEEECCCCTTSH------HH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh------cCceEEEEeeCCCH------HH
Confidence 5689999999999999999999999875 56666542 12222222211 12688899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCC----ceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKL----KLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~----k~~v~vST~~v 244 (554)
.+.+.+ ++|+|||+||.... .+.++..+++|+.|+..+++.+... .+. .++|++||...
T Consensus 92 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~ 171 (276)
T 2b4q_A 92 ARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAG 171 (276)
T ss_dssp HHHHHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGG
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHH
Confidence 666654 79999999996532 3568899999999998888877531 123 79999999866
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCC-hHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccce
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLD-VENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
+.... ... .|...+.... .+++.++.+.. ..|+++.+++||.
T Consensus 172 ~~~~~----------------------------~~~~~Y~asK~a~~--------~~~~~la~e~~-~~gI~vn~v~PG~ 214 (276)
T 2b4q_A 172 ISAMG----------------------------EQAYAYGPSKAALH--------QLSRMLAKELV-GEHINVNVIAPGR 214 (276)
T ss_dssp TCCCC----------------------------CSCTTHHHHHHHHH--------HHHHHHHHHHG-GGTEEEEEEEECC
T ss_pred cCCCC----------------------------CCccccHHHHHHHH--------HHHHHHHHHhc-ccCeEEEEEEecc
Confidence 43211 001 1222221111 23333433332 2489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|..+... .+... .... +. ..... + ...+...+|+|++++.++..... ...++++++.++
T Consensus 215 v~T~~~~---~~~~~--~~~~-~~--~~~~~------p--~~r~~~p~dvA~~v~~l~s~~~~--~~tG~~i~vdGG 273 (276)
T 2b4q_A 215 FPSRMTR---HIAND--PQAL-EA--DSASI------P--MGRWGRPEEMAALAISLAGTAGA--YMTGNVIPIDGG 273 (276)
T ss_dssp CCSTTTH---HHHHC--HHHH-HH--HHHTS------T--TSSCCCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred CcCcchh---hcchh--HHHH-HH--hhcCC------C--CCCcCCHHHHHHHHHHHhCcccc--CCCCCEEEeCCC
Confidence 8654221 11100 0000 00 00000 1 12467889999999988765321 234678888776
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-13 Score=141.75 Aligned_cols=200 Identities=15% Similarity=0.176 Sum_probs=133.6
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
+-.+++||||||||+||.++++.|++.+.. +|+++.+.. .+.+.++... ...++.++.+|++++
T Consensus 223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~--~vvl~~R~~~~~~~~~~l~~~l~~-----~g~~v~~~~~Dv~d~---- 291 (486)
T 2fr1_A 223 WKPTGTVLVTGGTGGVGGQIARWLARRGAP--HLLLVSRSGPDADGAGELVAELEA-----LGARTTVAACDVTDR---- 291 (486)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCS--EEEEEESSGGGSTTHHHHHHHHHH-----TTCEEEEEECCTTCH----
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcCCC--EEEEEcCCCCCcHHHHHHHHHHHh-----cCCEEEEEEeCCCCH----
Confidence 446789999999999999999999998753 566654321 2233222211 235789999999988
Q ss_pred CHHHHHHHhcCc------cEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccc
Q 042694 182 EEDLADVIAKEV------DVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 182 s~~~~~~l~~~v------diViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~ 248 (554)
+..+.+++++ |+|||+|+.... .+.++..+++|+.|+.++.+++... ++++||++||.......
T Consensus 292 --~~v~~~~~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~SS~a~~~g~ 368 (486)
T 2fr1_A 292 --ESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFSSFASAFGA 368 (486)
T ss_dssp --HHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTCC
T ss_pred --HHHHHHHHHHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEEEcChHhcCCC
Confidence 8888777654 999999997643 3467788899999999999999874 78999999997543221
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
.+ .. .|..+|.+.+.+++... ..|+++++++||.+.+..
T Consensus 369 ~g----------------------------~~------------~Yaaaka~l~~la~~~~-~~gi~v~~i~pG~~~~~g 407 (486)
T 2fr1_A 369 PG----------------------------LG------------GYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSG 407 (486)
T ss_dssp TT----------------------------CT------------TTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC---
T ss_pred CC----------------------------CH------------HHHHHHHHHHHHHHHHH-hcCCeEEEEECCeeCCCc
Confidence 11 00 23334555555555433 358999999999886531
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHH
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQ 383 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~ 383 (554)
.... .... .+ .......++.+++++++..++..
T Consensus 408 ------m~~~-----~~~~-----~~------~~~g~~~i~~e~~a~~l~~~l~~ 440 (486)
T 2fr1_A 408 ------MAEG-----PVAD-----RF------RRHGVIEMPPETACRALQNALDR 440 (486)
T ss_dssp -------------------------C------TTTTEECBCHHHHHHHHHHHHHT
T ss_pred ------ccch-----hHHH-----HH------HhcCCCCCCHHHHHHHHHHHHhC
Confidence 1111 0000 00 01123578999999999988764
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=130.00 Aligned_cols=227 Identities=12% Similarity=0.018 Sum_probs=135.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc-ch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCC-----
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN-AE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNL----- 179 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~-~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~l----- 179 (554)
.++|+++||||+|+||+++++.|++.|. +|++++ +. ..+.+.+... .....++.++.+|++++.-
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGY---AVCLHYHRSAAEANALSATLN----ARRPNSAITVQADLSNVATAPVSG 79 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHH----HHSTTCEEEEECCCSSSCBCCCC-
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEcCCCHHHHHHHHHHHh----hhcCCeeEEEEeecCCcccccccc
Confidence 4688999999999999999999999886 455554 32 1222222211 0123578899999998820
Q ss_pred ------CCCHHHHHHHhc-------CccEEEEcCCCCCc---------------------hhhHHHHHHHhchHHHHHHH
Q 042694 180 ------GLEEDLADVIAK-------EVDVIVNSAANTTF---------------------DERYDIAIDINTRGPCRLME 225 (554)
Q Consensus 180 ------GLs~~~~~~l~~-------~vdiViH~AA~v~~---------------------~~~~~~~~~~Nv~gt~~ll~ 225 (554)
+-..++.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++
T Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 159 (291)
T 1e7w_A 80 ADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIK 159 (291)
T ss_dssp ---CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHH
Confidence 000005555443 79999999997532 45677889999999999999
Q ss_pred HHHHc---CC------CceEEEEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCC
Q 042694 226 FAKQC---NK------LKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFST 296 (554)
Q Consensus 226 la~~~---~~------~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~ 296 (554)
++... .+ ..++|++||...+... +....|...+...
T Consensus 160 ~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~~~----------------------------~~~~~Y~asKaa~------- 204 (291)
T 1e7w_A 160 AFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL----------------------------LGYTIYTMAKGAL------- 204 (291)
T ss_dssp HHHHHHHTSCGGGSCSCEEEEEECCTTTTSCC----------------------------TTCHHHHHHHHHH-------
T ss_pred HHHHHHHhcCCCCCCCCcEEEEEechhhcCCC----------------------------CCCchhHHHHHHH-------
Confidence 88642 12 4689999997654321 1111122112111
Q ss_pred chHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCccc-ccchhhHHHH
Q 042694 297 DGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGIL-DVVPADMVVN 375 (554)
Q Consensus 297 ~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~-d~vpVD~va~ 375 (554)
..+++.++.+.. ..|+.+..++||.|..+. + .+ . ........ .. + .. -+...+++|+
T Consensus 205 -~~l~~~la~e~~-~~gI~vn~v~PG~v~T~~-~-~~---~------~~~~~~~~-~~------p--~~~r~~~pedvA~ 262 (291)
T 1e7w_A 205 -EGLTRSAALELA-PLQIRVNGVGPGLSVLVD-D-MP---P------AVWEGHRS-KV------P--LYQRDSSAAEVSD 262 (291)
T ss_dssp -HHHHHHHHHHHG-GGTEEEEEEEESSBCCGG-G-SC---H------HHHHHHHT-TC------T--TTTSCBCHHHHHH
T ss_pred -HHHHHHHHHHHH-hcCeEEEEEeeCCccCCc-c-CC---H------HHHHHHHh-hC------C--CCCCCCCHHHHHH
Confidence 123444444333 348999999999985432 1 10 0 00000000 00 0 01 3567899999
Q ss_pred HHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 376 ATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 376 aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+++.++..... -..+.++++.++
T Consensus 263 ~v~~l~s~~~~--~itG~~i~vdGG 285 (291)
T 1e7w_A 263 VVIFLCSSKAK--YITGTCVKVDGG 285 (291)
T ss_dssp HHHHHHSGGGT--TCCSCEEEESTT
T ss_pred HHHHHhCCccc--CccCcEEEECCC
Confidence 99988764321 234678888776
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-13 Score=129.80 Aligned_cols=218 Identities=10% Similarity=0.072 Sum_probs=136.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--h---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--E---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLE 182 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs 182 (554)
+++|+|+||||+|+||++++++|++.|. +|+++.+ . ..+.+.+.... ...++.++.+|++++
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~----- 75 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALESV---NLVLHYHQAKDSDTANKLKDELED-----QGAKVALYQSDLSNE----- 75 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSSC---EEEEEESCGGGHHHHHHHHHHHHT-----TTCEEEEEECCCCSH-----
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecCccCHHHHHHHHHHHHh-----cCCcEEEEECCCCCH-----
Confidence 5689999999999999999999999876 4454421 1 22222222211 245789999999988
Q ss_pred HHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceeccc
Q 042694 183 EDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 183 ~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~ 247 (554)
++.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||......
T Consensus 76 -~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~ 154 (262)
T 3ksu_A 76 -EEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY 154 (262)
T ss_dssp -HHHHHHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH
T ss_pred -HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC
Confidence 77776664 79999999997532 3467888999999999999999752 23458999999765443
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEccce
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
..+ .. .|..+|. +++.++.+.. ..|+.+..+.||.
T Consensus 155 ~~~----------------------------~~------------~Y~asKaa~~~l~~~la~e~~-~~gi~vn~v~PG~ 193 (262)
T 3ksu_A 155 TGF----------------------------YS------------TYAGNKAPVEHYTRAASKELM-KQQISVNAIAPGP 193 (262)
T ss_dssp HCC----------------------------CC------------C-----CHHHHHHHHHHHHTT-TTTCEEEEEEECC
T ss_pred CCC----------------------------Cc------------hhHHHHHHHHHHHHHHHHHHH-HcCcEEEEEeeCC
Confidence 210 00 2344443 4444444433 3489999999999
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|..+.... .... ....... .......+...+++|++++.++.. . .--.++++++.++
T Consensus 194 v~T~~~~~---~~~~-----~~~~~~~---------~~~~~~r~~~pedvA~~v~~L~s~-~--~~itG~~i~vdGg 250 (262)
T 3ksu_A 194 MDTSFFYG---QETK-----ESTAFHK---------SQAMGNQLTKIEDIAPIIKFLTTD-G--WWINGQTIFANGG 250 (262)
T ss_dssp CCTHHHHT---CC--------------------------CCCCSCCGGGTHHHHHHHHTT-T--TTCCSCEEEESTT
T ss_pred CcCccccc---cCch-----HHHHHHH---------hcCcccCCCCHHHHHHHHHHHcCC-C--CCccCCEEEECCC
Confidence 85432110 0000 0000000 000112467789999999888764 2 2234689999887
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-13 Score=128.28 Aligned_cols=203 Identities=11% Similarity=0.055 Sum_probs=129.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+|+||||+|+||++++++|++.|. +|+++++..- . .......+.+|++++ ++.+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~--------~-----~~~~~~~~~~D~~~~------~~v~ 62 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW---WVASIDVVEN--------E-----EASASVIVKMTDSFT------EQAD 62 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSCC--------T-----TSSEEEECCCCSCHH------HHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCChh--------h-----ccCCcEEEEcCCCCH------HHHH
Confidence 4578999999999999999999999876 4555543210 0 112456788999987 6666
Q ss_pred HHhc---------CccEEEEcCCCCC--------chhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceeccccc
Q 042694 188 VIAK---------EVDVIVNSAANTT--------FDERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 188 ~l~~---------~vdiViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+ ++|++||+||... ..+.++..+++|+.|+..+++.+... .+-.++|++||...+....
T Consensus 63 ~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 142 (241)
T 1dhr_A 63 QVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP 142 (241)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT
T ss_pred HHHHHHHHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCC
Confidence 5543 7999999999643 12457788999999999999998753 1225899999976643211
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh---h--cCCCcEEEEcccee
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL---E--RGDIPVVIIRPSVI 324 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~---~--~~glp~~I~Rp~~V 324 (554)
.. .. |..+|...+.+.+... . ..|+.+.+++||.|
T Consensus 143 ----------------------------~~------~~------Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v 182 (241)
T 1dhr_A 143 ----------------------------GM------IG------YGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTL 182 (241)
T ss_dssp ----------------------------TB------HH------HHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCE
T ss_pred ----------------------------Cc------hH------HHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcc
Confidence 01 11 1222332233333222 1 35799999999988
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
-.+... .+.. .......+|.+++|++++.++..... ...++++++.++
T Consensus 183 ~T~~~~---~~~~-----------------------~~~~~~~~~~~~vA~~v~~l~~~~~~--~~~G~~~~v~g~ 230 (241)
T 1dhr_A 183 DTPMNR---KSMP-----------------------EADFSSWTPLEFLVETFHDWITGNKR--PNSGSLIQVVTT 230 (241)
T ss_dssp ECHHHH---HHST-----------------------TSCGGGSEEHHHHHHHHHHHHTTTTC--CCTTCEEEEEEE
T ss_pred cCcccc---ccCc-----------------------chhhccCCCHHHHHHHHHHHhcCCCc--CccceEEEEeCC
Confidence 543210 0000 00012357789999999887754321 234678887765
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=126.66 Aligned_cols=221 Identities=12% Similarity=0.098 Sum_probs=131.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|+||||||+||++++++|++.|. +|+++++..-. +.+.. .+..+.+|+++..+ ++..+.+
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~---~V~~~~r~~~~-~~~~~----------~~~~~~~D~~~~~~---~~~~~~~ 64 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGY---RVAIASRNPEE-AAQSL----------GAVPLPTDLEKDDP---KGLVKRA 64 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCHH-HHHHH----------TCEEEECCTTTSCH---HHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHH-HHHhh----------CcEEEecCCchHHH---HHHHHHH
Confidence 57899999999999999999999876 45555433211 22211 26778999987311 1222222
Q ss_pred ---hcCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccceeeccc
Q 042694 190 ---AKEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRGKVMEKP 256 (554)
Q Consensus 190 ---~~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~~i~E~~ 256 (554)
..++|++||+|+.... .+.++..+++|+.|+..+++.+... .+..++|++||...+....
T Consensus 65 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 137 (239)
T 2ekp_A 65 LEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG------- 137 (239)
T ss_dssp HHHHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCC-------
Confidence 2489999999996532 3468899999999999999888431 2567999999987654320
Q ss_pred cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccc
Q 042694 257 FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWM 336 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~ 336 (554)
+ +....|...+... ..+++.++.+.. ..|+++.++|||.|.++......
T Consensus 138 -~------------------~~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~Pg~v~t~~~~~~~--- 186 (239)
T 2ekp_A 138 -P------------------VPIPAYTTAKTAL--------LGLTRALAKEWA-RLGIRVNLLCPGYVETEFTLPLR--- 186 (239)
T ss_dssp -T------------------SCCHHHHHHHHHH--------HHHHHHHHHHHG-GGTEEEEEEEECSBCSGGGHHHH---
T ss_pred -C------------------CCCccHHHHHHHH--------HHHHHHHHHHhh-hcCcEEEEEEeCCccCchhhccc---
Confidence 0 0111121111111 022333333332 24899999999999764321100
Q ss_pred cCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 337 EGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 337 ~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. ........ ... + ...+...+|+|++++.++..... ...++++++.++
T Consensus 187 ~~----~~~~~~~~-~~~------p--~~~~~~~~dvA~~~~~l~s~~~~--~~tG~~~~vdgG 235 (239)
T 2ekp_A 187 QN----PELYEPIT-ARI------P--MGRWARPEEIARVAAVLCGDEAE--YLTGQAVAVDGG 235 (239)
T ss_dssp TC----HHHHHHHH-TTC------T--TSSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred cC----HHHHHHHH-hcC------C--CCCCcCHHHHHHHHHHHcCchhc--CCCCCEEEECCC
Confidence 00 00000000 000 1 12367889999999887754321 224678888776
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=128.57 Aligned_cols=206 Identities=18% Similarity=0.181 Sum_probs=129.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
..+|+|+||||+|+||++++++|++.|.+ |+++++. .+++.+. ...++..+.+|++++ ++.+
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~-~~~~~~~--------~~~~~~~~~~Dv~d~------~~v~ 75 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHP---LLLLARR-VERLKAL--------NLPNTLCAQVDVTDK------YTFD 75 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCC---EEEEESC-HHHHHTT--------CCTTEEEEECCTTCH------HHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECC-HHHHHHh--------hcCCceEEEecCCCH------HHHH
Confidence 56789999999999999999999998875 4444432 1222221 234788999999987 7766
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||...+...
T Consensus 76 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~-- 153 (266)
T 3p19_A 76 TAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTF-- 153 (266)
T ss_dssp HHHHHHHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC--
T ss_pred HHHHHHHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCC--
Confidence 6655 79999999997532 3567889999999999988776421 255799999997654321
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
+....|...+... ..+++.++.+... .|+++..++||.|..+...
T Consensus 154 --------------------------~~~~~Y~asK~a~--------~~~~~~la~e~~~-~gi~vn~v~PG~v~T~~~~ 198 (266)
T 3p19_A 154 --------------------------PDHAAYCGTKFAV--------HAISENVREEVAA-SNVRVMTIAPSAVKTELLS 198 (266)
T ss_dssp --------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECSBSSSGGG
T ss_pred --------------------------CCCchHHHHHHHH--------HHHHHHHHHHhcc-cCcEEEEEeeCccccchhh
Confidence 1111122212111 1234444444333 4899999999999654321
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHh
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQH 384 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~ 384 (554)
.... ............ ....++.++|||++++.++..+
T Consensus 199 ~~~~--------~~~~~~~~~~~~--------~~~r~~~pedvA~av~~l~~~~ 236 (266)
T 3p19_A 199 HTTS--------QQIKDGYDAWRV--------DMGGVLAADDVARAVLFAYQQP 236 (266)
T ss_dssp GCSC--------HHHHHHHHHHHH--------HTTCCBCHHHHHHHHHHHHHSC
T ss_pred cccc--------hhhhHHHHhhcc--------cccCCCCHHHHHHHHHHHHcCC
Confidence 1100 000000000000 0124678999999999988754
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-13 Score=129.99 Aligned_cols=213 Identities=12% Similarity=0.112 Sum_probs=131.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||||||+||++++++|++.|. +|++.++.. . ..+++.++.+|++++ ++.+
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~---------~-----~~~~~~~~~~Dl~d~------~~v~ 75 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAGD---KVAITYRSG---------E-----PPEGFLAVKCDITDT------EQVE 75 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSS---------C-----CCTTSEEEECCTTSH------HHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCh---------H-----hhccceEEEecCCCH------HHHH
Confidence 5689999999999999999999999886 455554321 0 122467899999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ .+|++||+|+.... .+.++..+++|+.|+.++++.+... .+..++|++||........+
T Consensus 76 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~ 155 (253)
T 2nm0_A 76 QAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAG 155 (253)
T ss_dssp HHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCC
Confidence 6654 47999999997542 2467889999999999999887542 24679999999755332100
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
...|..+|... ..+++.++.+.. ..|+.+.+++||.|..+...
T Consensus 156 ----------------------------------~~~Y~asK~a~--~~~~~~la~e~~-~~gi~vn~v~PG~v~T~~~~ 198 (253)
T 2nm0_A 156 ----------------------------------QANYAASKAGL--VGFARSLARELG-SRNITFNVVAPGFVDTDMTK 198 (253)
T ss_dssp ----------------------------------HHHHHHHHHHH--HHHHHHHHHHHC-SSSEEEEEEEECSBCC----
T ss_pred ----------------------------------cHHHHHHHHHH--HHHHHHHHHHhh-hcCeEEEEEEeCcCcCcchh
Confidence 01122221000 123333333332 35899999999988543221
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+ .. .. ....... + ...++..+|+|++++.++..... ...++++.+.++
T Consensus 199 ~~~---~~------~~----~~~~~~~---p--~~~~~~p~dvA~~i~~l~s~~~~--~~tG~~i~vdGG 248 (253)
T 2nm0_A 199 VLT---DE------QR----ANIVSQV---P--LGRYARPEEIAATVRFLASDDAS--YITGAVIPVDGG 248 (253)
T ss_dssp --------------CH----HHHHTTC---T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hcC---HH------HH----HHHHhcC---C--CCCCcCHHHHHHHHHHHhCcccc--CCcCcEEEECCc
Confidence 100 00 00 0000000 1 12467899999999888765321 224678888776
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-13 Score=130.52 Aligned_cols=201 Identities=13% Similarity=0.114 Sum_probs=129.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.+|+|+||||+|+||++++++|++.|. +|+++++... . ..-..+..|++++ ++.+.
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~~-----~----------~~~~~~~~d~~d~------~~v~~ 76 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKSW---NTISIDFREN-----P----------NADHSFTIKDSGE------EEIKS 76 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCC-----T----------TSSEEEECSCSSH------HHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCcc-----c----------ccccceEEEeCCH------HHHHH
Confidence 468999999999999999999999886 4565543210 0 0113467888776 66666
Q ss_pred Hhc-------CccEEEEcCCCCC--------chhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceeccccccee
Q 042694 189 IAK-------EVDVIVNSAANTT--------FDERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRGKV 252 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~~i 252 (554)
+.+ .+|+|||+||... ..+.++..+++|+.|+.++++.+... .+-.++|++||...+....
T Consensus 77 ~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~--- 153 (251)
T 3orf_A 77 VIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTS--- 153 (251)
T ss_dssp HHHHHHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT---
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCC---
Confidence 654 5799999999632 13567889999999999999999763 1224899999976543211
Q ss_pred eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh-h----cCCCcEEEEccceeeec
Q 042694 253 MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL-E----RGDIPVVIIRPSVIEST 327 (554)
Q Consensus 253 ~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~-~----~~glp~~I~Rp~~V~g~ 327 (554)
.. . .|..+|...+.+.+... + ..|+.+.+++||.|..+
T Consensus 154 -------------------------~~------~------~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~ 196 (251)
T 3orf_A 154 -------------------------GM------I------AYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTP 196 (251)
T ss_dssp -------------------------TB------H------HHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCH
T ss_pred -------------------------CC------c------hhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCc
Confidence 11 1 12222333333333322 2 35899999999988653
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
... .+.. ......+++++|+|++++.++..+.. ....++++++.++
T Consensus 197 ~~~---~~~~-----------------------~~~~~~~~~~~dva~~i~~l~~~~~~-~~~tG~~i~v~~g 242 (251)
T 3orf_A 197 TNR---KYMS-----------------------DANFDDWTPLSEVAEKLFEWSTNSDS-RPTNGSLVKFETK 242 (251)
T ss_dssp HHH---HHCT-----------------------TSCGGGSBCHHHHHHHHHHHHHCGGG-CCCTTCEEEEEEE
T ss_pred chh---hhcc-----------------------cccccccCCHHHHHHHHHHHhcCccc-cCCcceEEEEecC
Confidence 221 0000 01123577899999999998876121 1234678888766
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-12 Score=126.89 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=88.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|+||||+|+||++++++|++.|. +|+++++. ..+.+.+.... ..++.++.+|++++ ++.+.
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~---~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~------~~v~~ 86 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW---SLVLTGRREERLQALAGELSA------KTRVLPLTLDVRDR------AAMSA 86 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTT------TSCEEEEECCTTCH------HHHHH
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhc------CCcEEEEEcCCCCH------HHHHH
Confidence 7999999999999999999999886 45555432 22233322211 14788999999988 77777
Q ss_pred HhcC-------ccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCc-eEEEEeeceec
Q 042694 189 IAKE-------VDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLK-LFVQVSTAYVN 245 (554)
Q Consensus 189 l~~~-------vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k-~~v~vST~~v~ 245 (554)
+.++ +|++||+||.... .+.++..+++|+.|+..+.+.+... .+.. ++|++||...+
T Consensus 87 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~ 162 (272)
T 2nwq_A 87 AVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGK 162 (272)
T ss_dssp HHHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGT
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhc
Confidence 7654 5999999997532 3567889999999988887776421 2445 99999997654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=127.94 Aligned_cols=226 Identities=11% Similarity=0.054 Sum_probs=136.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|+||++++++|++.|. +|++.++ ...+.+.+.... ...++..+.+|++++ ++
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 96 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGA---HVILHGVKPGSTAAVQQRIIA-----SGGTAQELAGDLSEA------GA 96 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSTTTTHHHHHHHHH-----TTCCEEEEECCTTST------TH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHHHHh-----cCCeEEEEEecCCCH------HH
Confidence 5789999999999999999999999886 4555432 222333222211 235788999999988 66
Q ss_pred HHHHhc------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccccc
Q 042694 186 ADVIAK------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 186 ~~~l~~------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||.......
T Consensus 97 ~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~- 175 (275)
T 4imr_A 97 GTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPK- 175 (275)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCC-
Confidence 555554 79999999996432 3467889999999999999988431 245699999997654321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
+....|...+... ..+++.++.+... .|+.+..++||.|..+..
T Consensus 176 ---------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~~-~gI~vn~v~PG~v~T~~~ 219 (275)
T 4imr_A 176 ---------------------------SVVTAYAATKAAQ--------HNLIQSQARDFAG-DNVLLNTLAPGLVDTDRN 219 (275)
T ss_dssp ---------------------------TTBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEESSBCSHHH
T ss_pred ---------------------------CCchhhHHHHHHH--------HHHHHHHHHHhcc-cCcEEEEEEeccccCccc
Confidence 1111122112111 1234444443332 489999999999865321
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. +... ............. + ..-+...+|+|++++.++..... --.++++++.++
T Consensus 220 ~~---~~~~---~~~~~~~~~~~~~------p--~~r~~~pedvA~~v~fL~s~~a~--~itG~~i~vdGG 274 (275)
T 4imr_A 220 AD---RRAQ---DPEGWDEYVRTLN------W--MGRAGRPEEMVGAALFLASEACS--FMTGETIFLTGG 274 (275)
T ss_dssp HH---HHHH---CHHHHHHHHHHHS------T--TCSCBCGGGGHHHHHHHHSGGGT--TCCSCEEEESSC
T ss_pred cc---cccc---ChHHHHHHHhhcC------c--cCCCcCHHHHHHHHHHHcCcccC--CCCCCEEEeCCC
Confidence 10 0000 0000000000000 0 11245688999999888765332 224678888664
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-12 Score=127.63 Aligned_cols=121 Identities=15% Similarity=0.211 Sum_probs=89.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+++||||+|+||++++++|++.|. +|++.++. ..+.+.+. ...++.++.+|++++ ++
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dv~~~------~~ 65 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGA---RVAVLDKSAERLRELEVA--------HGGNAVGVVGDVRSL------QD 65 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH--------TBTTEEEEECCTTCH------HH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCHHHHHHHHHH--------cCCcEEEEEcCCCCH------HH
Confidence 4689999999999999999999999886 55655432 22222222 235789999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc------------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF------------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v 244 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... ++-.++|++||...
T Consensus 66 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~ 145 (281)
T 3zv4_A 66 QKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAG 145 (281)
T ss_dssp HHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGG
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchh
Confidence 665544 68999999997532 1247788999999999999988642 12258999999755
Q ss_pred c
Q 042694 245 N 245 (554)
Q Consensus 245 ~ 245 (554)
.
T Consensus 146 ~ 146 (281)
T 3zv4_A 146 F 146 (281)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=125.32 Aligned_cols=204 Identities=12% Similarity=0.045 Sum_probs=127.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+++||||+|+||++++++|++.|. +|++.++.. + +|++++ +..+
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~-----------------~------~D~~~~------~~v~ 51 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHT---IVHVASRQT-----------------G------LDISDE------KSVY 51 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTE---EEEEESGGG-----------------T------CCTTCH------HHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEecCCc-----------------c------cCCCCH------HHHH
Confidence 4678999999999999999999998775 555555321 0 788887 7777
Q ss_pred HHhc---CccEEEEcCCCCC--------chhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeeceecccccceeecc
Q 042694 188 VIAK---EVDVIVNSAANTT--------FDERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRGKVMEK 255 (554)
Q Consensus 188 ~l~~---~vdiViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~~i~E~ 255 (554)
.+.+ ++|++||+||... ..+.++..+++|+.|+..+++.+... .+-.++|++||...+....
T Consensus 52 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------ 125 (223)
T 3uce_A 52 HYFETIGAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVA------ 125 (223)
T ss_dssp HHHHHHCSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCT------
T ss_pred HHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCC------
Confidence 6665 7999999999752 13567889999999999999999753 1224899999876543211
Q ss_pred ccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcccc
Q 042694 256 PFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGW 335 (554)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~ 335 (554)
....|...+... ..+++.++.+. ..+.+..++||.|..+.......-
T Consensus 126 ----------------------~~~~Y~asK~a~--------~~~~~~la~e~---~~i~vn~v~PG~v~t~~~~~~~~~ 172 (223)
T 3uce_A 126 ----------------------NTYVKAAINAAI--------EATTKVLAKEL---APIRVNAISPGLTKTEAYKGMNAD 172 (223)
T ss_dssp ----------------------TCHHHHHHHHHH--------HHHHHHHHHHH---TTSEEEEEEECSBCSGGGTTSCHH
T ss_pred ----------------------CchHHHHHHHHH--------HHHHHHHHHhh---cCcEEEEEEeCCCcchhhhhcchh
Confidence 111111111111 12333333322 238999999999976433211110
Q ss_pred ccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 336 MEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 336 ~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
. .......... ......+..++|+|++++.++.... ..++++++.++
T Consensus 173 ~-----~~~~~~~~~~---------~~~~~~~~~~~dvA~~~~~l~~~~~----~tG~~i~vdgG 219 (223)
T 3uce_A 173 D-----RDAMYQRTQS---------HLPVGKVGEASDIAMAYLFAIQNSY----MTGTVIDVDGG 219 (223)
T ss_dssp H-----HHHHHHHHHH---------HSTTCSCBCHHHHHHHHHHHHHCTT----CCSCEEEESTT
T ss_pred h-----HHHHHHHHhh---------cCCCCCccCHHHHHHHHHHHccCCC----CCCcEEEecCC
Confidence 0 0000000000 0011346788999999988876422 24689998876
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=125.24 Aligned_cols=215 Identities=18% Similarity=0.183 Sum_probs=114.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCC-CCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNL-GLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~l-GLs~~~~ 186 (554)
.++|+|+||||+|+||++++++|++ +. +|+++++.. +++.+.. ...++.++.+|++++.. ....+..
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~---~v~~~~r~~-~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DH---IVYALGRNP-EHLAALA-------EIEGVEPIESDIVKEVLEEGGVDKL 70 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TS---EEEEEESCH-HHHHHHH-------TSTTEEEEECCHHHHHHTSSSCGGG
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CC---eEEEEeCCH-HHHHHHH-------hhcCCcceecccchHHHHHHHHHHH
Confidence 3578999999999999999999987 54 566655431 2222221 12468889999876511 0000011
Q ss_pred HHHhcCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceecccccceeecccc
Q 042694 187 DVIAKEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNGQRRGKVMEKPF 257 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~~~~~~i~E~~~ 257 (554)
+. ..++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++|++||...+....
T Consensus 71 ~~-~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 141 (245)
T 3e9n_A 71 KN-LDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNGPHP-------- 141 (245)
T ss_dssp TT-CSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC-----------------
T ss_pred Hh-cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccccCCC--------
Confidence 11 1379999999997543 2457788999999988888877531 1125899999986654321
Q ss_pred CCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcccccc
Q 042694 258 CMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWME 337 (554)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~ 337 (554)
....|...+... ..+++.++.+.. ..|+.+.+++||.|.++.... +.+
T Consensus 142 --------------------~~~~Y~asK~a~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~t~~~~~---~~~ 189 (245)
T 3e9n_A 142 --------------------GNTIYAASKHAL--------RGLADAFRKEEA-NNGIRVSTVSPGPTNTPMLQG---LMD 189 (245)
T ss_dssp ---------------------CHHHHHHHHHH--------HHHHHHHHHHHG-GGTCEEEEEEECCC-------------
T ss_pred --------------------CchHHHHHHHHH--------HHHHHHHHHHhh-hcCeEEEEEecCCccCchhhh---hhh
Confidence 111111111111 123333333322 348999999999997643211 110
Q ss_pred CCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeC
Q 042694 338 GNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIAS 399 (554)
Q Consensus 338 ~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~ 399 (554)
. .+.. + ....++.++|+|++++.++.... ...+||+.-
T Consensus 190 ~----------~~~~----~-----~~~~~~~p~dvA~~i~~l~~~~~-----~~~~~~i~~ 227 (245)
T 3e9n_A 190 S----------QGTN----F-----RPEIYIEPKEIANAIRFVIDAGE-----TTQITNVDV 227 (245)
T ss_dssp -------------------------CCGGGSCHHHHHHHHHHHHTSCT-----TEEEEEEEE
T ss_pred h----------hhcc----c-----ccccCCCHHHHHHHHHHHHcCCC-----ccceeeeEE
Confidence 0 0000 0 01346789999999998876532 246787753
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-13 Score=142.21 Aligned_cols=221 Identities=14% Similarity=0.205 Sum_probs=143.5
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-----hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-----LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-----~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
+-.+++||||||||+||.++++.|++.+.. +|+++.+. ..+.+.++... ...++.++.+|++++
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~--~vvl~~R~~~~~~~~~~l~~~l~~-----~g~~v~~~~~Dvtd~---- 324 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEGAE--RLVLTSRRGPEAPGAAELAEELRG-----HGCEVVHAACDVAER---- 324 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCS--EEEEEESSGGGSTTHHHHHHHHHT-----TTCEEEEEECCSSCH----
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCc--EEEEEecCCcccHHHHHHHHHHHh-----cCCEEEEEEeCCCCH----
Confidence 346789999999999999999999987653 56655432 12333332211 235789999999987
Q ss_pred CHHHHHHHhcC--ccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccccee
Q 042694 182 EEDLADVIAKE--VDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKV 252 (554)
Q Consensus 182 s~~~~~~l~~~--vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i 252 (554)
+.++.++++ +|+|||+|+.... .+.++..+++|+.|+.++.+++..+.++++||++||........+
T Consensus 325 --~~v~~~~~~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~g-- 400 (511)
T 2z5l_A 325 --DALAALVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNAG-- 400 (511)
T ss_dssp --HHHHHHHHHSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCTT--
T ss_pred --HHHHHHHhcCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCCC--
Confidence 888887764 9999999998653 246778899999999999999876436789999999754221110
Q ss_pred eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc
Q 042694 253 MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF 332 (554)
Q Consensus 253 ~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~ 332 (554)
. . .|..+|...+.+++.. ...|+++++++||.+...
T Consensus 401 --------------------------~------~------~YaaaKa~ld~la~~~-~~~gi~v~sv~pG~~~~t----- 436 (511)
T 2z5l_A 401 --------------------------Q------G------AYAAANAALDALAERR-RAAGLPATSVAWGLWGGG----- 436 (511)
T ss_dssp --------------------------B------H------HHHHHHHHHHHHHHHH-HTTTCCCEEEEECCBCST-----
T ss_pred --------------------------C------H------HHHHHHHHHHHHHHHH-HHcCCcEEEEECCcccCC-----
Confidence 0 1 1223345555555543 345899999999987321
Q ss_pred cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHH
Q 042694 333 SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLAR 412 (554)
Q Consensus 333 ~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~ 412 (554)
+..... ... .+. ......++.+++++++..++.... ..+ .+. .+.|..+..
T Consensus 437 -gm~~~~--~~~--------~~~------~~g~~~l~~e~~a~~l~~al~~~~------~~v-~v~-----~~d~~~~~~ 487 (511)
T 2z5l_A 437 -GMAAGA--GEE--------SLS------RRGLRAMDPDAAVDALLGAMGRND------VCV-TVV-----DVDWERFAP 487 (511)
T ss_dssp -TCCCCH--HHH--------HHH------HHTBCCBCHHHHHHHHHHHHHHTC------SEE-EEC-----CBCHHHHHH
T ss_pred -cccccc--cHH--------HHH------hcCCCCCCHHHHHHHHHHHHhCCC------CEE-EEE-----eCCHHHHHh
Confidence 111110 000 000 011346889999999998876532 122 222 457877766
Q ss_pred HHH
Q 042694 413 LLH 415 (554)
Q Consensus 413 ~~~ 415 (554)
.+.
T Consensus 488 ~~~ 490 (511)
T 2z5l_A 488 ATN 490 (511)
T ss_dssp HHH
T ss_pred hhc
Confidence 544
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=131.36 Aligned_cols=129 Identities=13% Similarity=0.082 Sum_probs=90.0
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
++|+|+||||||+||++++++|++.+.+|-.+..-... ......+.... ......++.++.+|++++ +.+
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dv~d~------~~v 72 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARA--LACPPGSLETLQLDVRDS------KSV 72 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHH--TTCCTTSEEEEECCTTCH------HHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhh--ccCCCCceEEEEecCCCH------HHH
Confidence 36899999999999999999999988765222211111 11111111100 000125788999999987 777
Q ss_pred HHHhcC-----ccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceec
Q 042694 187 DVIAKE-----VDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVN 245 (554)
Q Consensus 187 ~~l~~~-----vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~ 245 (554)
+.+.+. +|++||+|+.... .+.++..+++|+.|+.++++.+.. + .+..++|++||....
T Consensus 73 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~ 146 (327)
T 1jtv_A 73 AAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGL 146 (327)
T ss_dssp HHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccc
Confidence 777764 9999999986432 246788999999999999998732 1 256799999997654
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-12 Score=123.45 Aligned_cols=236 Identities=12% Similarity=0.065 Sum_probs=138.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+||||+|.||++++++|++.|. +|++.++. ..+.+.+.... .....++..+.+|++++ ++
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~~~Dv~~~------~~ 73 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA---AVAFCARDGERLRAAESALRQ---RFPGARLFASVCDVLDA------LQ 73 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH---HSTTCCEEEEECCTTCH------HH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHH---hcCCceEEEEeCCCCCH------HH
Confidence 5689999999999999999999999886 45555432 22222222110 01123589999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||.......
T Consensus 74 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 153 (265)
T 3lf2_A 74 VRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPE 153 (265)
T ss_dssp HHHHHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCC
Confidence 665553 78999999997543 3567889999999999999998642 234589999997654321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
+....|...+..+ ..+++.++.+... .|+++..++||.|..+.
T Consensus 154 ----------------------------~~~~~Y~asKaa~--------~~l~~~la~e~~~-~gi~vn~v~PG~v~t~~ 196 (265)
T 3lf2_A 154 ----------------------------PHMVATSAARAGV--------KNLVRSMAFEFAP-KGVRVNGILIGLVESGQ 196 (265)
T ss_dssp ----------------------------TTBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCHH
T ss_pred ----------------------------CCchhhHHHHHHH--------HHHHHHHHHHhcc-cCeEEEEEEeCcCcCch
Confidence 1111121111111 1244444444433 48999999999996642
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
... +.........-...... .+.. ....-.-.+...+|+|++++.++..... --.++++++.++
T Consensus 197 ~~~---~~~~~~~~~~~~~~~~~-~~~~--~~~~p~~r~~~pedvA~~v~fL~s~~~~--~itG~~i~vdGG 260 (265)
T 3lf2_A 197 WRR---RFEAREERELDWAQWTA-QLAR--NKQIPLGRLGKPIEAARAILFLASPLSA--YTTGSHIDVSGG 260 (265)
T ss_dssp HHH---HHTC------CHHHHHH-HHHH--HTTCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSEEEEESSS
T ss_pred hhh---hhhhhhhhccCHHHHHH-HHhh--ccCCCcCCCcCHHHHHHHHHHHhCchhc--CcCCCEEEECCC
Confidence 211 11000000000000000 0000 0000012366789999999988764332 234689988876
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-13 Score=137.52 Aligned_cols=177 Identities=13% Similarity=0.012 Sum_probs=111.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCC----CccEEEEEcchh-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVP----DVGKIFIINAEL-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~----~V~~i~~~~~~~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|+||||+||+|++|+..|+..+. .+..|++++... .+++...... .....+..+ +|+... +
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~d----l~~~~~~~~-~di~~~------~ 72 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME----LEDCAFPLL-AGLEAT------D 72 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTCTTE-EEEEEE------S
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhh----hhccccccc-CCeEec------c
Confidence 46899999999999999999998653 123778887542 1222111000 000011112 566554 4
Q ss_pred HHHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCc-eEEEEeece-ecccccceeeccccCCCC
Q 042694 185 LADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLK-LFVQVSTAY-VNGQRRGKVMEKPFCMGD 261 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~v~vST~~-v~~~~~~~i~E~~~~~~~ 261 (554)
++...++++|+|||+||..+- ..+..++.+.|+.+|+++++.+++..+.+ +++++|+.. +... +.++..+
T Consensus 73 ~~~~a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~----~~~~~~~--- 145 (327)
T 1y7t_A 73 DPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNAL----IAYKNAP--- 145 (327)
T ss_dssp CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHH----HHHHTCT---
T ss_pred ChHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHH----HHHHHcC---
Confidence 445556899999999997653 34567889999999999999999863244 666666532 0111 1111000
Q ss_pred CcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 262 SIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
.. ++ .+.|..+|..++++...+.+..|++++++||+.|||+..
T Consensus 146 ~~-------------~p------------~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 146 GL-------------NP------------RNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp TS-------------CG------------GGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred CC-------------Ch------------hheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 00 00 013556777778877666566689999999999999765
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=122.98 Aligned_cols=126 Identities=12% Similarity=0.081 Sum_probs=89.0
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccC--CCCCCCCC
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNV--CENNLGLE 182 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl--~~~~lGLs 182 (554)
.+++|+|+||||+|+||++++++|++.|. +|+++++. ..+.+.+... .....++.++.+|+ +++
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~d~d~~~~----- 78 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGA---SVVLLGRTEASLAEVSDQIK----SAGQPQPLIIALNLENATA----- 78 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH----HTTSCCCEEEECCTTTCCH-----
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEecCHHHHHHHHHHHH----hcCCCCceEEEeccccCCH-----
Confidence 36789999999999999999999999886 45555432 2222222221 11124566777887 554
Q ss_pred HHHHHHHhc-------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeecee
Q 042694 183 EDLADVIAK-------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYV 244 (554)
Q Consensus 183 ~~~~~~l~~-------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v 244 (554)
++.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||...
T Consensus 79 -~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~ 157 (247)
T 3i1j_A 79 -QQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVG 157 (247)
T ss_dssp -HHHHHHHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGG
T ss_pred -HHHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhh
Confidence 66555543 79999999997531 2567889999999999999988531 24568999999755
Q ss_pred c
Q 042694 245 N 245 (554)
Q Consensus 245 ~ 245 (554)
.
T Consensus 158 ~ 158 (247)
T 3i1j_A 158 R 158 (247)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-12 Score=124.26 Aligned_cols=125 Identities=14% Similarity=0.066 Sum_probs=90.2
Q ss_pred ccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCC
Q 042694 108 LKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLE 182 (554)
Q Consensus 108 ~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs 182 (554)
+++|+|+||||+ |+||++++++|++.|. +|+++.. ...+...++.. .....++.++.+|++++
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G~---~v~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~Dl~~~----- 85 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGA---AVAITYASRAQGAEENVKELE----KTYGIKAKAYKCQVDSY----- 85 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTSC---EEEECBSSSSSHHHHHHHHHH----HHHCCCEECCBCCTTCH-----
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCC---eEEEEeCCcchhHHHHHHHHH----HhcCCceeEEecCCCCH-----
Confidence 578999999999 8999999999999876 4554432 11111111110 11245788999999987
Q ss_pred HHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceec
Q 042694 183 EDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 183 ~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~ 245 (554)
++.+.+.+ .+|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||....
T Consensus 86 -~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 164 (267)
T 3gdg_A 86 -ESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGH 164 (267)
T ss_dssp -HHHHHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred -HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEcccccc
Confidence 66666654 67999999997542 3567889999999999999988321 245689999997653
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-12 Score=124.77 Aligned_cols=124 Identities=15% Similarity=0.256 Sum_probs=92.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---------hHHHHHHHcCCchhhhccCcEEEEEccCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---------LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENN 178 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---------~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~ 178 (554)
.++|+++||||+|.||++++++|++.|. +|+++++. ..+.+.+... ....++.++.+|++++
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~- 77 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGA---NVALVAKSAEPHPKLPGTIYTAAKEIE-----EAGGQALPIVGDIRDG- 77 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTC---EEEEEESCCSCCSSSCCCHHHHHHHHH-----HHTSEEEEEECCTTSH-
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECChhhhhhhhHHHHHHHHHHH-----hcCCcEEEEECCCCCH-
Confidence 4689999999999999999999999876 45555321 1222222211 1235789999999988
Q ss_pred CCCCHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEee
Q 042694 179 LGLEEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVST 241 (554)
Q Consensus 179 lGLs~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST 241 (554)
++.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||
T Consensus 78 -----~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS 152 (285)
T 3sc4_A 78 -----DAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSP 152 (285)
T ss_dssp -----HHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCC
T ss_pred -----HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 77666655 89999999997542 3467888999999999999988653 13458999999
Q ss_pred ceec
Q 042694 242 AYVN 245 (554)
Q Consensus 242 ~~v~ 245 (554)
....
T Consensus 153 ~~~~ 156 (285)
T 3sc4_A 153 PIRL 156 (285)
T ss_dssp CCCC
T ss_pred hhhc
Confidence 7543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-12 Score=126.59 Aligned_cols=127 Identities=16% Similarity=0.082 Sum_probs=88.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+|+||||+|+||++++++|++.|. +|++..+. ..+...+.... ....++.++.+|++++ .+.
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~---~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~Dl~~~-----~~~ 77 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI---MVVLTCRDVTKGHEAVEKLKN----SNHENVVFHQLDVTDP-----IAT 77 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHT----TTCCSEEEEECCTTSC-----HHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHh----cCCCceEEEEccCCCc-----HHH
Confidence 5689999999999999999999999876 45555432 22222222211 1235789999999986 244
Q ss_pred HHHHh-------cCccEEEEcCCCCCc-------------------------------------hhhHHHHHHHhchHHH
Q 042694 186 ADVIA-------KEVDVIVNSAANTTF-------------------------------------DERYDIAIDINTRGPC 221 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~~-------------------------------------~~~~~~~~~~Nv~gt~ 221 (554)
.+.+. ..+|++||+||.... .+.++..+++|+.|+.
T Consensus 78 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~ 157 (311)
T 3o26_A 78 MSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVK 157 (311)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHH
Confidence 44333 379999999997632 2346677999999999
Q ss_pred HHHHHHHHc---CCCceEEEEeeceecc
Q 042694 222 RLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 222 ~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
.+++.+... .+..++|++||.....
T Consensus 158 ~l~~~~~~~l~~~~~~~IV~isS~~~~~ 185 (311)
T 3o26_A 158 SVTEVLIPLLQLSDSPRIVNVSSSTGSL 185 (311)
T ss_dssp HHHHHHHHHHTTSSSCEEEEECCGGGSG
T ss_pred HHHHHhhHhhccCCCCeEEEEecCCccc
Confidence 999887542 2446999999976543
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=6e-12 Score=123.51 Aligned_cols=123 Identities=13% Similarity=0.105 Sum_probs=89.3
Q ss_pred ccCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGA--TGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGa--TGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|+|+|||| +|+||++++++|++.|. +|++.++..-+.+.+.... ...++.++.+|++++ ++
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 70 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGA---QLVLTGFDRLRLIQRITDR-----LPAKAPLLELDVQNE------EH 70 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTC---EEEEEECSCHHHHHHHHTT-----SSSCCCEEECCTTCH------HH
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCC---EEEEEecChHHHHHHHHHh-----cCCCceEEEccCCCH------HH
Confidence 46899999999 99999999999999876 4555543221111221111 123677899999987 77
Q ss_pred HHHHhc----------CccEEEEcCCCCC--------c----hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeec
Q 042694 186 ADVIAK----------EVDVIVNSAANTT--------F----DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTA 242 (554)
Q Consensus 186 ~~~l~~----------~vdiViH~AA~v~--------~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~ 242 (554)
.+.+.+ .+|++||+||... + .+.++..+++|+.|+..+++.+... .+-.++|++||.
T Consensus 71 v~~~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~ 150 (269)
T 2h7i_A 71 LASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFD 150 (269)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCc
Confidence 666655 7999999999754 1 3467788999999999999999752 112489999986
Q ss_pred ee
Q 042694 243 YV 244 (554)
Q Consensus 243 ~v 244 (554)
..
T Consensus 151 ~~ 152 (269)
T 2h7i_A 151 PS 152 (269)
T ss_dssp CS
T ss_pred cc
Confidence 44
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.1e-12 Score=123.38 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=86.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|+++||||+|+||++++++|++.|. +|++.++. ..+.+.+.... ...++.++.+|++++ ++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 68 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGA---TVYITGRHLDTLRVVAQEAQS-----LGGQCVPVVCDSSQE------SE 68 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----HSSEEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHH-----cCCceEEEECCCCCH------HH
Confidence 4678999999999999999999999886 45555432 22222222110 134788999999987 65
Q ss_pred HHHHh--------cCccEEEEcCC--CC--------Cc----hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEe
Q 042694 186 ADVIA--------KEVDVIVNSAA--NT--------TF----DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVS 240 (554)
Q Consensus 186 ~~~l~--------~~vdiViH~AA--~v--------~~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vS 240 (554)
.+.+. ..+|++||+|+ .. .+ .+.++...++|+.|+..+.+.+.. + .+..++|++|
T Consensus 69 v~~~~~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~is 148 (260)
T 2qq5_A 69 VRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVIS 148 (260)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEEC
T ss_pred HHHHHHHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 55443 35799999994 21 11 246778899999999888877653 1 2456899999
Q ss_pred eceec
Q 042694 241 TAYVN 245 (554)
Q Consensus 241 T~~v~ 245 (554)
|....
T Consensus 149 S~~~~ 153 (260)
T 2qq5_A 149 SPGSL 153 (260)
T ss_dssp CGGGT
T ss_pred Chhhc
Confidence 97653
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=125.03 Aligned_cols=125 Identities=19% Similarity=0.286 Sum_probs=92.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---------HHHHHHHcCCchhhhccCcEEEEEccCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---------FKCLKQTYGKSYQAFMLSKLVPAVGNVCENN 178 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---------~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~ 178 (554)
+++|+||||||+|.||++++++|++.|. +|+++++.. .+.+.+... ....++.++.+|++++
T Consensus 43 l~gk~vlVTGas~GIG~aia~~La~~Ga---~Vvl~~r~~~~~~~l~~~l~~~~~~~~-----~~g~~~~~~~~Dv~d~- 113 (346)
T 3kvo_A 43 LAGCTVFITGASRGIGKAIALKAAKDGA---NIVIAAKTAQPHPKLLGTIYTAAEEIE-----AVGGKALPCIVDVRDE- 113 (346)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESCCSCCSSSCCCHHHHHHHHH-----HTTCEEEEEECCTTCH-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHHCCC---EEEEEECChhhhhhhHHHHHHHHHHHH-----hcCCeEEEEEccCCCH-
Confidence 6789999999999999999999999876 455543211 122222211 1235788999999988
Q ss_pred CCCCHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEee
Q 042694 179 LGLEEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVST 241 (554)
Q Consensus 179 lGLs~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST 241 (554)
+..+.+.+ ++|++||+||.... .+.++..+++|+.|+..+++++... .+..++|++||
T Consensus 114 -----~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS 188 (346)
T 3kvo_A 114 -----QQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISP 188 (346)
T ss_dssp -----HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred -----HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 76666654 89999999997542 3567899999999999999998542 24469999999
Q ss_pred ceecc
Q 042694 242 AYVNG 246 (554)
Q Consensus 242 ~~v~~ 246 (554)
.....
T Consensus 189 ~~~~~ 193 (346)
T 3kvo_A 189 PLNLN 193 (346)
T ss_dssp CCCCC
T ss_pred HHHcC
Confidence 76543
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-12 Score=122.85 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=124.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+|+||||||+||++++++|++.|. +|+++++. ..+.+.+ ... ...++..+ |..+. ++..+
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~-l~~-----~~~~~~~~--d~~~v-----~~~~~ 64 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGH---TVACHDESFKQKDELEA-FAE-----TYPQLKPM--SEQEP-----AELIE 64 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGSHHHHHH-HHH-----HCTTSEEC--CCCSH-----HHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHH-HHh-----cCCcEEEE--CHHHH-----HHHHH
Confidence 36899999999999999999999876 56665432 1222221 100 11233333 32221 12222
Q ss_pred HHh---cCccEEEEcCCCC-Cc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccceee
Q 042694 188 VIA---KEVDVIVNSAANT-TF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRGKVM 253 (554)
Q Consensus 188 ~l~---~~vdiViH~AA~v-~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~~i~ 253 (554)
.+. ..+|++||+||.. .. .+.++..+++|+.|+..+++.+... .+..++|++||...+...
T Consensus 65 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 139 (254)
T 1zmt_A 65 AVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW----- 139 (254)
T ss_dssp HHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC-----
T ss_pred HHHHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCC-----
Confidence 222 3799999999976 31 2467889999999999999988531 245699999997654321
Q ss_pred ccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc-
Q 042694 254 EKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF- 332 (554)
Q Consensus 254 E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~- 332 (554)
+....|...+... ..+++.++.+.. ..|+.+.+++||.|+|+....+
T Consensus 140 -----------------------~~~~~Y~~sK~a~--------~~~~~~la~e~~-~~gi~v~~v~PG~v~~~~~~~~~ 187 (254)
T 1zmt_A 140 -----------------------KELSTYTSARAGA--------CTLANALSKELG-EYNIPVFAIGPNYLHSEDSPYFY 187 (254)
T ss_dssp -----------------------TTCHHHHHHHHHH--------HHHHHHHHHHHG-GGTCCEEEEEESSBCCBTCCSSC
T ss_pred -----------------------CCchHHHHHHHHH--------HHHHHHHHHHhh-hcCcEEEEEecCccccccccccC
Confidence 1111121111111 123344443332 2489999999999977543111
Q ss_pred -cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 333 -SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 333 -~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+..... ..... ....... + ...+...+|+|++++.++..... ...+.++++.++
T Consensus 188 ~T~~~~~---~~~~~----~~~~~~~---p--~~~~~~p~dvA~~v~~l~s~~~~--~~tG~~~~vdgG 242 (254)
T 1zmt_A 188 PTEPWKT---NPEHV----AHVKKVT---A--LQRLGTQKELGELVAFLASGSCD--YLTGQVFWLAGG 242 (254)
T ss_dssp BHHHHTT---CHHHH----HHHHHHS---S--SSSCBCHHHHHHHHHHHHTTSCG--GGTTCEEEESTT
T ss_pred CCccccc---ChHHH----HHHhccC---C--CCCCcCHHHHHHHHHHHhCcccC--CccCCEEEECCC
Confidence 000000 00000 0000000 1 11356789999999888764321 123578988776
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-11 Score=127.75 Aligned_cols=216 Identities=19% Similarity=0.173 Sum_probs=135.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+++++++||||+|.||+++++.|++.|. +|++++.. ..+.+.+.... .++.++.+|++++ +..
T Consensus 211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga---~Vvl~~r~~~~~~l~~~~~~-------~~~~~~~~Dvtd~------~~v 274 (454)
T 3u0b_A 211 LDGKVAVVTGAARGIGATIAEVFARDGA---TVVAIDVDGAAEDLKRVADK-------VGGTALTLDVTAD------DAV 274 (454)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECGGGHHHHHHHHHH-------HTCEEEECCTTST------THH
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHCCC---EEEEEeCCccHHHHHHHHHH-------cCCeEEEEecCCH------HHH
Confidence 5789999999999999999999999875 56665432 22333322211 1356899999998 565
Q ss_pred HHHhc--------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 187 DVIAK--------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 187 ~~l~~--------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
+.+.+ .+|+|||+|+.... .+.++..+++|+.|+.++.+++... .+..+||++||.......
T Consensus 275 ~~~~~~~~~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~ 354 (454)
T 3u0b_A 275 DKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGN 354 (454)
T ss_dssp HHHHHHHHHHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCC
T ss_pred HHHHHHHHHHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCC
Confidence 55543 49999999998643 3568899999999999999999763 145699999997653321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchH----HHHHHHhhhhhcCCCcEEEEcccee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGE----VAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~----~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
. .. .. |..+|. +++.++.+.. ..|+++..+.||.|
T Consensus 355 ~----------------------------g~------~~------YaasKaal~~l~~~la~e~~-~~gI~vn~v~PG~v 393 (454)
T 3u0b_A 355 R----------------------------GQ------TN------YATTKAGMIGLAEALAPVLA-DKGITINAVAPGFI 393 (454)
T ss_dssp T----------------------------TC------HH------HHHHHHHHHHHHHHHHHHHH-TTTCEEEEEEECSB
T ss_pred C----------------------------CC------HH------HHHHHHHHHHHHHHHHHHhh-hcCcEEEEEEcCcc
Confidence 1 00 11 222233 4455544433 35899999999998
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+.....+.... . ...... ....+...+|+++++..++.... .--.++++++.++
T Consensus 394 ~T~~~~~~~~~~~------~----~~~~~~--------~l~r~g~pedvA~~v~fL~s~~a--~~itG~~i~vdGG 449 (454)
T 3u0b_A 394 ETKMTEAIPLATR------E----VGRRLN--------SLFQGGQPVDVAELIAYFASPAS--NAVTGNTIRVCGQ 449 (454)
T ss_dssp CC----------C------H----HHHHSB--------TTSSCBCHHHHHHHHHHHHCGGG--TTCCSCEEEESSS
T ss_pred cChhhhhcchhhH------H----HHHhhc--------cccCCCCHHHHHHHHHHHhCCcc--CCCCCcEEEECCc
Confidence 6543221111000 0 000000 01123467899999988775433 1234678888776
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-11 Score=120.49 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=91.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---------HHHHHHHcCCchhhhccCcEEEEEccCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---------FKCLKQTYGKSYQAFMLSKLVPAVGNVCENN 178 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---------~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~ 178 (554)
+++|+++||||+|.||++++++|++.|. +|++.++.. .+.+.+... ....++.++.+|++++
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~- 74 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGA---NVAIAAKSAVANPKLPGTIHSAAAAVN-----AAGGQGLALKCDIREE- 74 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCCSCCTTSCCCHHHHHHHHH-----HHTSEEEEEECCTTCH-
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeccchhhhhhHHHHHHHHHHHH-----hcCCeEEEEeCCCCCH-
Confidence 4689999999999999999999999886 455543211 222222111 1245788999999987
Q ss_pred CCCCHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEee
Q 042694 179 LGLEEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVST 241 (554)
Q Consensus 179 lGLs~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST 241 (554)
++.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||
T Consensus 75 -----~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS 149 (274)
T 3e03_A 75 -----DQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAP 149 (274)
T ss_dssp -----HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCC
T ss_pred -----HHHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECC
Confidence 76666654 79999999997532 3467889999999999999988642 23468999999
Q ss_pred ceecc
Q 042694 242 AYVNG 246 (554)
Q Consensus 242 ~~v~~ 246 (554)
.....
T Consensus 150 ~~~~~ 154 (274)
T 3e03_A 150 PPSLN 154 (274)
T ss_dssp CCCCC
T ss_pred hHhcC
Confidence 76543
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-11 Score=121.39 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=82.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-----------hhHHHHHHHcCCchhhhccCcEEEEEccCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-----------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCE 176 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-----------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~ 176 (554)
+++|+|+||||+|+||+++++.|++.|. +|++.+. ...+.+.+.... .... +.+|+++
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~Ga---~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~-----~~~~---~~~D~~~ 75 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERGA---LVVVNDLGGDFKGVGKGSSAADKVVEEIRR-----RGGK---AVANYDS 75 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECCCBCTTSCBCCSHHHHHHHHHHHH-----TTCE---EEEECCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCCcccccccCCHHHHHHHHHHHHh-----hCCe---EEEeCCC
Confidence 4689999999999999999999999886 4555421 112222221110 0111 2478887
Q ss_pred CCCCCCHHHHHHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEE
Q 042694 177 NNLGLEEDLADVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQV 239 (554)
Q Consensus 177 ~~lGLs~~~~~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~v 239 (554)
. ++.+.+. .++|++||+||.... .+.++..+++|+.|+..+.+++... .+..++|++
T Consensus 76 ~------~~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~v 149 (319)
T 1gz6_A 76 V------EAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMT 149 (319)
T ss_dssp G------GGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred H------HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6 4433332 379999999997542 2467889999999999998887431 245799999
Q ss_pred eecee
Q 042694 240 STAYV 244 (554)
Q Consensus 240 ST~~v 244 (554)
||...
T Consensus 150 sS~~~ 154 (319)
T 1gz6_A 150 ASASG 154 (319)
T ss_dssp CCHHH
T ss_pred CChhh
Confidence 99644
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-11 Score=118.36 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=89.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHh---hCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILR---TVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLE 182 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~---~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs 182 (554)
+++|+++||||+|+||++++++|++ .|. +|+++++. ..+.+.+.... .....++.++.+|++++
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~---~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~~~Dv~~~----- 72 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS---VMLVSARSESMLRQLKEELGA---QQPDLKVVLAAADLGTE----- 72 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC---EEEEEESCHHHHHHHHHHHHH---HCTTSEEEEEECCTTSH-----
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC---eEEEEeCCHHHHHHHHHHHHh---hCCCCeEEEEecCCCCH-----
Confidence 4689999999999999999999998 665 55655432 22222222110 00134788999999987
Q ss_pred HHHHHHHhc---------Ccc--EEEEcCCCCC----------chhhHHHHHHHhchHHHHHHHHHHHcC-----CCceE
Q 042694 183 EDLADVIAK---------EVD--VIVNSAANTT----------FDERYDIAIDINTRGPCRLMEFAKQCN-----KLKLF 236 (554)
Q Consensus 183 ~~~~~~l~~---------~vd--iViH~AA~v~----------~~~~~~~~~~~Nv~gt~~ll~la~~~~-----~~k~~ 236 (554)
++.+.+.+ .+| ++||+||... -.+.++..+++|+.|+..+++.+...- +..++
T Consensus 73 -~~v~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~i 151 (259)
T 1oaa_A 73 -AGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTV 151 (259)
T ss_dssp -HHHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred -HHHHHHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceE
Confidence 66555542 468 9999999742 125678899999999999999997531 23479
Q ss_pred EEEeeceec
Q 042694 237 VQVSTAYVN 245 (554)
Q Consensus 237 v~vST~~v~ 245 (554)
|++||...+
T Consensus 152 v~isS~~~~ 160 (259)
T 1oaa_A 152 VNISSLCAL 160 (259)
T ss_dssp EEECCGGGT
T ss_pred EEEcCchhc
Confidence 999998664
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-10 Score=109.17 Aligned_cols=211 Identities=16% Similarity=0.149 Sum_probs=133.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|+||||++-||+.+++.|++.|. +|++.+.. -+++.+... ...++..+.+|++++ ++.+.+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga---~V~~~~~~-~~~~~~~~~------~~~~~~~~~~Dv~~~------~~v~~~ 65 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGD---KVCFIDID-EKRSADFAK------ERPNLFYFHGDVADP------LTLKKF 65 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESC-HHHHHHHHT------TCTTEEEEECCTTSH------HHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCC-HHHHHHHHH------hcCCEEEEEecCCCH------HHHHHH
Confidence 47899999999999999999999886 45555432 122222221 234788999999998 666666
Q ss_pred hc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceecccccceee
Q 042694 190 AK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNGQRRGKVM 253 (554)
Q Consensus 190 ~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~~~~~~i~ 253 (554)
.+ ++|++||+|+.... .+.++..+++|+.|+..+.+.+..+ ++--++|.+||.......
T Consensus 66 v~~~~~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~----- 140 (247)
T 3ged_A 66 VEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSE----- 140 (247)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCC-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCC-----
Confidence 43 79999999987543 3578999999999999998887542 123589999997553321
Q ss_pred ccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcc
Q 042694 254 EKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFS 333 (554)
Q Consensus 254 E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~ 333 (554)
+....|...+..+ ..+++.++.+.. . ++.+..+-||.|-.+..+
T Consensus 141 -----------------------~~~~~Y~asKaal--------~~ltk~lA~ela-~-~IrVN~I~PG~i~t~~~~--- 184 (247)
T 3ged_A 141 -----------------------PDSEAYASAKGGI--------VALTHALAMSLG-P-DVLVNCIAPGWINVTEQQ--- 184 (247)
T ss_dssp -----------------------TTCHHHHHHHHHH--------HHHHHHHHHHHT-T-TSEEEEEEECSBCCCC-----
T ss_pred -----------------------CCCHHHHHHHHHH--------HHHHHHHHHHHC-C-CCEEEEEecCcCCCCCcH---
Confidence 1111122222222 145666665553 3 799999999988432211
Q ss_pred ccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 334 GWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 334 g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.+.+ .... .+ |- --+.-.+|+|++++-++.... -.++++.+.++
T Consensus 185 ~~~~------~~~~-----~~------Pl--~R~g~pediA~~v~fL~s~~~----iTG~~i~VDGG 228 (247)
T 3ged_A 185 EFTQ------EDCA-----AI------PA--GKVGTPKDISNMVLFLCQQDF----ITGETIIVDGG 228 (247)
T ss_dssp -CCH------HHHH-----TS------TT--SSCBCHHHHHHHHHHHHHCSS----CCSCEEEESTT
T ss_pred HHHH------HHHh-----cC------CC--CCCcCHHHHHHHHHHHHhCCC----CCCCeEEECcC
Confidence 1110 0000 00 00 013346889999988875432 24678888776
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-11 Score=128.16 Aligned_cols=162 Identities=10% Similarity=0.097 Sum_probs=114.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-----hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-----LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-----~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
++++|||||||.||.++++.|++.|.. +|++..+. ..+.+.++... ...++.++.+|++++ +
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~--~vvl~~R~~~~~~~~~~l~~~l~~-----~g~~v~~~~~Dvtd~------~ 305 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAA--HLVLTSRRGADAPGAAELRAELEQ-----LGVRVTIAACDAADR------E 305 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCS--EEEEEESSGGGSTTHHHHHHHHHH-----TTCEEEEEECCTTCH------H
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCc--EEEEEeCCCCChHHHHHHHHHHHh-----cCCeEEEEEccCCCH------H
Confidence 389999999999999999999987753 56655331 12333332211 245889999999998 7
Q ss_pred HHHHHhc------CccEEEEcCCCC-Cc-------hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc
Q 042694 185 LADVIAK------EVDVIVNSAANT-TF-------DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 185 ~~~~l~~------~vdiViH~AA~v-~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~ 250 (554)
..+.+++ .+|+|||+|+.. .. .+.++..+++|+.|+.++.+++... .+.+||++||....-...+
T Consensus 306 ~v~~~~~~i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~-~~~~iV~~SS~a~~~g~~g 384 (496)
T 3mje_A 306 ALAALLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL-DLDAFVLFSSGAAVWGSGG 384 (496)
T ss_dssp HHHHHHHTCCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTTCTT
T ss_pred HHHHHHHHHHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc-CCCEEEEEeChHhcCCCCC
Confidence 7777765 489999999976 22 3467889999999999999999874 7789999999755332110
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
. . .|..+|.+.+.+++... ..|++++.+.||.+.+
T Consensus 385 ----------------------------~------~------~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~ 419 (496)
T 3mje_A 385 ----------------------------Q------P------GYAAANAYLDALAEHRR-SLGLTASSVAWGTWGE 419 (496)
T ss_dssp ----------------------------C------H------HHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESS
T ss_pred ----------------------------c------H------HHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccC
Confidence 0 1 12223444455555433 3589999999998854
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=111.52 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=138.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.+++.|.+.|. +|++.+. +..+.+.++... ...++.++.+|++++ ++
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga---~Vv~~~~~~~~~~~~~~~i~~-----~g~~~~~~~~Dvt~~------~~ 70 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS---IVVAVELLEDRLNQIVQELRG-----MGKEVLGVKADVSKK------KD 70 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 6899999999999999999999999886 4555543 223333332211 345788999999998 77
Q ss_pred HHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ ++|++||+||... + .+.++..+++|+.|+..+.+.+.. | .+--++|++||......
T Consensus 71 v~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~ 150 (254)
T 4fn4_A 71 VEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRG 150 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCS
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCC
Confidence 776653 7999999999642 2 247889999999999999888764 2 23458999999755322
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
. +....|...+..+ ..+++.++.+... .|+.+..+-||.|-.+
T Consensus 151 ~----------------------------~~~~~Y~asKaal--------~~ltr~lA~ela~-~gIrVN~V~PG~i~T~ 193 (254)
T 4fn4_A 151 G----------------------------FAGAPYTVAKHGL--------IGLTRSIAAHYGD-QGIRAVAVLPGTVKTN 193 (254)
T ss_dssp S----------------------------SSCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCSS
T ss_pred C----------------------------CCChHHHHHHHHH--------HHHHHHHHHHhhh-hCeEEEEEEeCCCCCc
Confidence 1 1111122222221 1356666655544 4899999999988432
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
... +.... ..... .......+ +- --+.-.+|+|++++-++..... --.++++.+.++
T Consensus 194 ~~~---~~~~~----~~~~~---~~~~~~~~--~~--~R~g~pediA~~v~fLaSd~a~--~iTG~~i~VDGG 250 (254)
T 4fn4_A 194 IGL---GSSKP----SELGM---RTLTKLMS--LS--SRLAEPEDIANVIVFLASDEAS--FVNGDAVVVDGG 250 (254)
T ss_dssp CTT---SCSSC----CHHHH---HHHHHHHT--TC--CCCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred ccc---cccCC----cHHHH---HHHHhcCC--CC--CCCcCHHHHHHHHHHHhCchhc--CCcCCEEEeCCC
Confidence 211 00000 00000 00000000 00 0133468999998888765332 234678887665
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-10 Score=109.79 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=78.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE-c--chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-N--AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~--~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
||+|+||||+|+||++++++|++.|. +|+++ + +. .+++.+.... . ....+. |..+. ++..
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~~~~r~-~~~~~~~~~~-----~-~~~~~~--~~~~v-----~~~~ 63 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGY---TVVCHDASFAD-AAERQRFESE-----N-PGTIAL--AEQKP-----ERLV 63 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGS-HHHHHHHHHH-----S-TTEEEC--CCCCG-----GGHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCCcCC-HHHHHHHHHH-----h-CCCccc--CHHHH-----HHHH
Confidence 57899999999999999999999876 56666 3 32 1222221110 1 111111 22221 1333
Q ss_pred HHHhc---CccEEEEcCCCCCc----------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 187 DVIAK---EVDVIVNSAANTTF----------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 187 ~~l~~---~vdiViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+++.+... .+..++|++||...+.
T Consensus 64 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 139 (244)
T 1zmo_A 64 DATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK 139 (244)
T ss_dssp HHHGGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC
Confidence 44432 79999999997543 2567889999999999999988531 2457899999976543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=111.74 Aligned_cols=224 Identities=14% Similarity=0.103 Sum_probs=138.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.+++.|++.|. +|++.+.. ..+...++... ...++..+.+|++++ ++
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga---~Vvi~~~~~~~~~~~~~~l~~-----~g~~~~~~~~Dv~~~------~~ 72 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGA---RVILNDIRATLLAESVDTLTR-----KGYDAHGVAFDVTDE------LA 72 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEECCSCHHHHHHHHHHHHH-----TTCCEEECCCCTTCH------HH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeeCCCH------HH
Confidence 5899999999999999999999999886 56665532 22222222111 235788999999998 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+.. | .+--++|.+||......
T Consensus 73 v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~ 152 (255)
T 4g81_D 73 IEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAA 152 (255)
T ss_dssp HHHHHHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSB
T ss_pred HHHHHHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCC
Confidence 666653 69999999997543 357899999999999999887743 2 23458999999765432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....|...+..+ ..+++.++.+... .|+.+..+-||.|-.+
T Consensus 153 ~~----------------------------~~~~Y~asKaal--------~~ltr~lA~ela~-~gIrVN~V~PG~i~T~ 195 (255)
T 4g81_D 153 RP----------------------------TVAPYTAAKGGI--------KMLTCSMAAEWAQ-FNIQTNAIGPGYILTD 195 (255)
T ss_dssp CT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCG
T ss_pred CC----------------------------CchhHHHHHHHH--------HHHHHHHHHHhcc-cCeEEEEEeeCCCCCc
Confidence 11 111122222211 1356666655544 4899999999998543
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
... ...+.-.....+ .... |- --+.-.+|+|++++-++..... --.++++.+.++
T Consensus 196 ~~~---~~~~~~~~~~~~-----~~~~------Pl--~R~g~pediA~~v~fL~S~~a~--~iTG~~i~VDGG 250 (255)
T 4g81_D 196 MNT---ALIEDKQFDSWV-----KSST------PS--QRWGRPEELIGTAIFLSSKASD--YINGQIIYVDGG 250 (255)
T ss_dssp GGH---HHHTCHHHHHHH-----HHHS------TT--CSCBCGGGGHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhh---cccCCHHHHHHH-----HhCC------CC--CCCcCHHHHHHHHHHHhCchhC--CCcCCEEEECCC
Confidence 221 111100000000 0000 00 0133457889998887754331 234578877665
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-10 Score=123.16 Aligned_cols=127 Identities=9% Similarity=0.083 Sum_probs=94.9
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cchh---------------HHHHHHHcCCchhhhccCcEEEE
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NAEL---------------FKCLKQTYGKSYQAFMLSKLVPA 170 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~~~---------------~~~l~~~~~~~~~~~~~~kv~~v 170 (554)
+-+++++|||||+|.||.++++.|.+.+.. ++++. .+.. .+.+.++.. ....++.++
T Consensus 248 ~~~~~~vLITGgsgGIG~~lA~~La~~G~~--~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~g~~v~~~ 320 (525)
T 3qp9_A 248 WQADGTVLVTGAEEPAAAEAARRLARDGAG--HLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELA-----DLGATATVV 320 (525)
T ss_dssp SCTTSEEEESSTTSHHHHHHHHHHHHHTCC--EEEEEECCCC---------------CHHHHHHHH-----HHTCEEEEE
T ss_pred ecCCCEEEEECCCCcHHHHHHHHHHHcCCC--EEEEEeCCCCCCccccccccccCHHHHHHHHHHH-----hcCCEEEEE
Confidence 456899999999999999999999998764 45555 3321 112222111 124578999
Q ss_pred EccCCCCCCCCCHHHHHHHhcC------ccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcCC----C
Q 042694 171 VGNVCENNLGLEEDLADVIAKE------VDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCNK----L 233 (554)
Q Consensus 171 ~GDl~~~~lGLs~~~~~~l~~~------vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~----~ 233 (554)
.+|++++ +..+.+++. +|+|||+||.... .+.++..+++|+.|+.++.+++..... .
T Consensus 321 ~~Dvtd~------~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~ 394 (525)
T 3qp9_A 321 TCDLTDA------EAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRP 394 (525)
T ss_dssp ECCTTSH------HHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CC
T ss_pred ECCCCCH------HHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 9999998 787777754 7999999997542 346788999999999999999987421 6
Q ss_pred ceEEEEeeceecc
Q 042694 234 KLFVQVSTAYVNG 246 (554)
Q Consensus 234 k~~v~vST~~v~~ 246 (554)
..||++||.....
T Consensus 395 ~~iV~~SS~a~~~ 407 (525)
T 3qp9_A 395 PVLVLFSSVAAIW 407 (525)
T ss_dssp CEEEEEEEGGGTT
T ss_pred CEEEEECCHHHcC
Confidence 7999999976543
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-10 Score=107.39 Aligned_cols=222 Identities=11% Similarity=0.083 Sum_probs=137.5
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+.|+||+++||||++-||+.+++.|.+.|. +|++.+... +.+. .....++..+.+|++++ ++
T Consensus 7 dlf~GK~alVTGas~GIG~aia~~la~~Ga---~Vv~~~~~~-~~~~--------~~~~~~~~~~~~Dv~~~------~~ 68 (242)
T 4b79_A 7 DIYAGQQVLVTGGSSGIGAAIAMQFAELGA---EVVALGLDA-DGVH--------APRHPRIRREELDITDS------QR 68 (242)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESST-TSTT--------SCCCTTEEEEECCTTCH------HH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH-HHHh--------hhhcCCeEEEEecCCCH------HH
Confidence 357899999999999999999999999886 455554321 1111 11345889999999987 77
Q ss_pred HHHHhc---CccEEEEcCCCCCc-----hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceecccccceeecc
Q 042694 186 ADVIAK---EVDVIVNSAANTTF-----DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNGQRRGKVMEK 255 (554)
Q Consensus 186 ~~~l~~---~vdiViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~~~~~~i~E~ 255 (554)
.+.+.+ ++|++||+|+.... .+.++..+++|+.|+..+.+.+..+ .+--++|.+||.......
T Consensus 69 v~~~~~~~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~------- 141 (242)
T 4b79_A 69 LQRLFEALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGS------- 141 (242)
T ss_dssp HHHHHHHCSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCC-------
T ss_pred HHHHHHhcCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCC-------
Confidence 777765 79999999997653 2468899999999999998887643 122589999997553221
Q ss_pred ccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcccc
Q 042694 256 PFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGW 335 (554)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~ 335 (554)
+....|...+..+ ..+++.++.+... .|+.+..+-||.|-.+..+....
T Consensus 142 ---------------------~~~~~Y~asKaav--------~~ltr~lA~Ela~-~gIrVNaV~PG~i~T~m~~~~~~- 190 (242)
T 4b79_A 142 ---------------------ADRPAYSASKGAI--------VQLTRSLACEYAA-ERIRVNAIAPGWIDTPLGAGLKA- 190 (242)
T ss_dssp ---------------------SSCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCC-----CC-
T ss_pred ---------------------CCCHHHHHHHHHH--------HHHHHHHHHHhhh-cCeEEEEEEeCCCCChhhhcccC-
Confidence 1111122222222 1356666655544 48999999999885432211110
Q ss_pred ccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 336 MEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 336 ~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+...... ..... |- --+.-.+|++++++-++..... --.++++.+.++
T Consensus 191 --~~~~~~~--------~~~~~---Pl--gR~g~peeiA~~v~fLaSd~a~--~iTG~~l~VDGG 238 (242)
T 4b79_A 191 --DVEATRR--------IMQRT---PL--ARWGEAPEVASAAAFLCGPGAS--FVTGAVLAVDGG 238 (242)
T ss_dssp --CHHHHHH--------HHHTC---TT--CSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred --CHHHHHH--------HHhcC---CC--CCCcCHHHHHHHHHHHhCchhc--CccCceEEECcc
Confidence 0000000 00000 00 0133468899998887754331 234577877665
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-10 Score=110.25 Aligned_cols=167 Identities=19% Similarity=0.183 Sum_probs=114.8
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+-++||+++||||++-||+.+++.|++.|. +|++.++. ..+...++ ...+...+.+|++++
T Consensus 25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga---~V~i~~r~~~~l~~~~~~--------~g~~~~~~~~Dv~~~------ 87 (273)
T 4fgs_A 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGA---RVFITGRRKDVLDAAIAE--------IGGGAVGIQADSANL------ 87 (273)
T ss_dssp CTTTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH--------HCTTCEEEECCTTCH------
T ss_pred chhCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHH--------cCCCeEEEEecCCCH------
Confidence 347899999999999999999999999886 45555432 22222222 235678899999988
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeeceecccc
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v~~~~ 248 (554)
++.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+.. +.+-.++|.+||.......
T Consensus 88 ~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~ 167 (273)
T 4fgs_A 88 AELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGT 167 (273)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCC
Confidence 77666653 69999999997543 357899999999999999998864 2233478899886543221
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
+....|...+..+ ..+++.++.+... .|+.+..+-||.|-.
T Consensus 168 ----------------------------~~~~~Y~asKaav--------~~ltr~lA~Ela~-~gIrVN~V~PG~i~T 208 (273)
T 4fgs_A 168 ----------------------------PAFSVYAASKAAL--------RSFARNWILDLKD-RGIRINTLSPGPTET 208 (273)
T ss_dssp ----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHTTT-SCEEEEEEEECSBCC
T ss_pred ----------------------------CCchHHHHHHHHH--------HHHHHHHHHHhcc-cCeEEEEEeeCCCCC
Confidence 1111122222221 1356666655543 489999999998843
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=105.75 Aligned_cols=228 Identities=9% Similarity=0.023 Sum_probs=135.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.+++.|.+.|. +|++.++ +..+.+.+.. ....++..+.+|++++ ++
T Consensus 5 L~gKvalVTGas~GIG~aia~~la~~Ga---~Vv~~~r~~~~~~~~~~~~------~~~~~~~~~~~Dv~~~------~~ 69 (258)
T 4gkb_A 5 LQDKVVIVTGGASGIGGAISMRLAEERA---IPVVFARHAPDGAFLDALA------QRQPRATYLPVELQDD------AQ 69 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCCHHHHHHHH------HHCTTCEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCcccHHHHHHHH------hcCCCEEEEEeecCCH------HH
Confidence 5799999999999999999999999876 4444432 2222221111 1234778899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeeceecccccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+..+ .+--++|.+||.......
T Consensus 70 v~~~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~-- 147 (258)
T 4gkb_A 70 CRDAVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQ-- 147 (258)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCC--
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCC--
Confidence 655543 79999999996431 3578899999999999998887542 112489999997653321
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
+....|...+..+ ..+++.++.+... .|+.+..+-||.|-.+..+
T Consensus 148 --------------------------~~~~~Y~asKaav--------~~ltr~lA~ela~-~gIrVN~V~PG~i~T~~~~ 192 (258)
T 4gkb_A 148 --------------------------GNTSGYCASKGAQ--------LALTREWAVALRE-HGVRVNAVIPAEVMTPLYR 192 (258)
T ss_dssp --------------------------SSCHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECSBCCSCC-
T ss_pred --------------------------CCchHHHHHHHHH--------HHHHHHHHHHhcc-cCeEEEEEecCCCCChhHh
Confidence 1111122222222 1356666655544 4899999999998543221
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.+............ ...... |- -.-+...+|+|++++-++..... --.++++.+.++
T Consensus 193 ---~~~~~~~~~~~~~~----~~~~~~---pl-g~R~g~peeiA~~v~fLaS~~a~--~iTG~~i~VDGG 249 (258)
T 4gkb_A 193 ---NWIATFEDPEAKLA----EIAAKV---PL-GRRFTTPDEIADTAVFLLSPRAS--HTTGEWLFVDGG 249 (258)
T ss_dssp -------------CHHH----HHHTTC---TT-TTSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred ---hhhhcccChHHHHH----HHHhcC---CC-CCCCcCHHHHHHHHHHHhCchhc--CccCCeEEECCC
Confidence 11111000000000 000000 00 01244568999998887755332 234678888776
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.6e-10 Score=106.02 Aligned_cols=168 Identities=14% Similarity=0.081 Sum_probs=113.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||+++||||++-||+.+++.|.+.|. +|++.+...-+...+.... ...++..+.+|++++ +..+
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~Ga---~Vvi~~r~~~~~~~~~~~~-----~g~~~~~~~~Dv~d~------~~v~ 72 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAGA---EVVCAARRAPDETLDIIAK-----DGGNASALLIDFADP------LAAK 72 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCCHHHHHHHHH-----TTCCEEEEECCTTST------TTTT
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcCC---EEEEEeCCcHHHHHHHHHH-----hCCcEEEEEccCCCH------HHHH
Confidence 6799999999999999999999999886 4555543221222221111 235788999999987 4444
Q ss_pred HHhc--CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeeceecccccceeec
Q 042694 188 VIAK--EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTAYVNGQRRGKVME 254 (554)
Q Consensus 188 ~l~~--~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~~v~~~~~~~i~E 254 (554)
.+.+ .+|+++|+|+.... .+.++..+++|+.|+..+.+.+.. | ++--++|.+||.......
T Consensus 73 ~~~~~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~------ 146 (247)
T 4hp8_A 73 DSFTDAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGG------ 146 (247)
T ss_dssp TSSTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCC------
Confidence 4443 69999999997543 357899999999999999887643 3 234589999997553321
Q ss_pred cccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 255 KPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
+....|...+..+ ..+++.++.+... .|+.+..+-||.|-.
T Consensus 147 ----------------------~~~~~Y~asKaav--------~~ltr~lA~Ela~-~gIrVNaV~PG~i~T 187 (247)
T 4hp8_A 147 ----------------------IRVPSYTAAKHGV--------AGLTKLLANEWAA-KGINVNAIAPGYIET 187 (247)
T ss_dssp ----------------------SSCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCS
T ss_pred ----------------------CCChHHHHHHHHH--------HHHHHHHHHHHhh-cCeEEEEEeeCCCCC
Confidence 1111122222222 1356666655544 489999999998844
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.2e-09 Score=103.13 Aligned_cols=225 Identities=13% Similarity=0.013 Sum_probs=135.0
Q ss_pred ccCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEc--chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIIN--AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~--~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
++||+++||||+| =||+.+++.|.+.|.+ |++.+ .+..+.+.+.... ....++.++++|++++
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~---Vvi~~r~~~~~~~~~~~~~~----~~~~~~~~~~~Dv~~~------ 70 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLGAK---LVFTYRKERSRKELEKLLEQ----LNQPEAHLYQIDVQSD------ 70 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTTCE---EEEEESSGGGHHHHHHHHGG----GTCSSCEEEECCTTCH------
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHh----cCCCcEEEEEccCCCH------
Confidence 5799999999886 6999999999998864 44443 2333444433321 1234788999999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc-----------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeecee
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF-----------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v 244 (554)
++.+.+.+ ++|+++|+|+.... .+.+....++|+.++..+.+.+... ++--++|++||...
T Consensus 71 ~~v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~ 150 (256)
T 4fs3_A 71 EEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGG 150 (256)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccc
Confidence 66665543 79999999997542 2346677889999998888887643 23348999998754
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcccee
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
.... +....|...+..+ ..+++.++.+... .|+.+..+-||.|
T Consensus 151 ~~~~----------------------------~~~~~Y~asKaal--------~~ltr~lA~Ela~-~gIrVN~V~PG~i 193 (256)
T 4fs3_A 151 EFAV----------------------------QNYNVMGVAKASL--------EANVKYLALDLGP-DNIRVNAISAGPI 193 (256)
T ss_dssp TSCC----------------------------TTTHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECCC
T ss_pred ccCc----------------------------ccchhhHHHHHHH--------HHHHHHHHHHhCc-cCeEEEEEecCCC
Confidence 3221 1111122222221 1355666655543 4899999999988
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
-.+..+.....- ..... ..... |- --+...+|++++++-++..... --.++++.+.++
T Consensus 194 ~T~~~~~~~~~~-------~~~~~----~~~~~---Pl--~R~g~peevA~~v~fL~Sd~a~--~iTG~~i~VDGG 251 (256)
T 4fs3_A 194 RTLSAKGVGGFN-------TILKE----IKERA---PL--KRNVDQVEVGKTAAYLLSDLSS--GVTGENIHVDSG 251 (256)
T ss_dssp CSGGGTTCTTHH-------HHHHH----HHHHS---TT--SSCCCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred CChhhhhccCCH-------HHHHH----HHhcC---CC--CCCcCHHHHHHHHHHHhCchhc--CccCCEEEECcC
Confidence 543322111110 00000 00000 00 0133468899998887754331 224578877665
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3e-09 Score=105.71 Aligned_cols=236 Identities=15% Similarity=0.106 Sum_probs=125.5
Q ss_pred ccCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEcchh-HHHH---HH-HcCCchhhhc---c-CcEEEEEccCCC
Q 042694 108 LKAKNFFVTGAT--GFLAKVLIEKILRTVPDVGKIFIINAEL-FKCL---KQ-TYGKSYQAFM---L-SKLVPAVGNVCE 176 (554)
Q Consensus 108 ~~~~~VlITGaT--GFlG~~Ll~~LL~~~~~V~~i~~~~~~~-~~~l---~~-~~~~~~~~~~---~-~kv~~v~GDl~~ 176 (554)
+++|+++||||+ |+||++++++|++.|. +|+++++.. .+.. +. ...+...+.. . .....+.+|+..
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGA---EILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF 82 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCC---eEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceec
Confidence 467899999999 9999999999999876 456554221 1100 11 0000000000 0 112334444311
Q ss_pred C---CCCC-----------CHHHHHHHh-------cCccEEEEcCCCCC-----c----hhhHHHHHHHhchHHHHHHHH
Q 042694 177 N---NLGL-----------EEDLADVIA-------KEVDVIVNSAANTT-----F----DERYDIAIDINTRGPCRLMEF 226 (554)
Q Consensus 177 ~---~lGL-----------s~~~~~~l~-------~~vdiViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~l 226 (554)
. ++.. ++++.+.+. ..+|++||+||... + .+.++..+++|+.|+..+++.
T Consensus 83 ~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ 162 (297)
T 1d7o_A 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH 162 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHH
Confidence 0 0000 002222222 37999999998532 2 246788999999999999999
Q ss_pred HHHc-CCCceEEEEeeceecccccceeeccccCCCCCcccccccccccCCCCCC-ChHHHHHHhhhccCCCCchHHHHHH
Q 042694 227 AKQC-NKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTL-DVENEMKLALESKEFSTDGEVAQKM 304 (554)
Q Consensus 227 a~~~-~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~k~~~~~k~~ae~l 304 (554)
+... .+-.++|++||....... +.. ..|...+..+. .+++.+
T Consensus 163 ~~~~m~~~g~iv~isS~~~~~~~----------------------------~~~~~~Y~asKaa~~--------~~~~~l 206 (297)
T 1d7o_A 163 FLPIMNPGGASISLTYIASERII----------------------------PGYGGGMSSAKAALE--------SDTRVL 206 (297)
T ss_dssp HGGGEEEEEEEEEEECGGGTSCC----------------------------TTCTTTHHHHHHHHH--------HHHHHH
T ss_pred HHHHhccCceEEEEeccccccCC----------------------------CCcchHHHHHHHHHH--------HHHHHH
Confidence 9752 112589999997553321 110 11222222111 233444
Q ss_pred HhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHh
Q 042694 305 KGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQH 384 (554)
Q Consensus 305 ~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~ 384 (554)
+.+.....|+.+..++||.|.++..... +..+ ........ .. + ...+..++++|++++.++...
T Consensus 207 a~e~~~~~gi~vn~v~PG~v~T~~~~~~-~~~~------~~~~~~~~-~~------p--~~r~~~pedvA~~v~~l~s~~ 270 (297)
T 1d7o_A 207 AFEAGRKQNIRVNTISAGPLGSRAAKAI-GFID------TMIEYSYN-NA------P--IQKTLTADEVGNAAAFLVSPL 270 (297)
T ss_dssp HHHHHHHHCCEEEEEEECCCBCCCSSCC-SHHH------HHHHHHHH-HS------S--SCCCBCHHHHHHHHHHHTSGG
T ss_pred HHHhCcccCcEEEEEeccccccchhhhc-cccH------HHHHHhhc-cC------C--CCCCCCHHHHHHHHHHHhCcc
Confidence 4333222489999999999976543211 0000 00000000 00 0 013467899999998876543
Q ss_pred cccCCCCCeEEEeeCC
Q 042694 385 GMIQKPDINVYQIASS 400 (554)
Q Consensus 385 ~~~~~~~~~vyn~~~~ 400 (554)
.. ...+.++++.++
T Consensus 271 ~~--~itG~~i~vdgG 284 (297)
T 1d7o_A 271 AS--AITGATIYVDNG 284 (297)
T ss_dssp GT--TCCSCEEEESTT
T ss_pred cc--CCCCCEEEECCC
Confidence 21 224678998876
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-09 Score=118.45 Aligned_cols=121 Identities=15% Similarity=0.122 Sum_probs=81.5
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-----------hhHHHHHHHcCCchhhhccCcEEEEEccCC
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-----------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVC 175 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-----------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~ 175 (554)
-+++|+++||||+|.||+++++.|++.|. +|++.+. ...+.+.++... .... +.+|++
T Consensus 16 ~l~gk~~lVTGas~GIG~aiA~~La~~Ga---~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~-----~~~~---~~~D~~ 84 (613)
T 3oml_A 16 RYDGRVAVVTGAGAGLGREYALLFAERGA---KVVVNDLGGTHSGDGASQRAADIVVDEIRK-----AGGE---AVADYN 84 (613)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEC--------------CHHHHHHHHHH-----TTCC---EEECCC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCcccccccCCHHHHHHHHHHHHH-----hCCe---EEEEeC
Confidence 36899999999999999999999999886 5555432 112222221110 1112 236888
Q ss_pred CCCCCCCHHHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEE
Q 042694 176 ENNLGLEEDLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQ 238 (554)
Q Consensus 176 ~~~lGLs~~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~ 238 (554)
+. ++.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+++.. + .+..++|+
T Consensus 85 d~------~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~ 158 (613)
T 3oml_A 85 SV------IDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIM 158 (613)
T ss_dssp CG------GGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CH------HHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 76 55555554 68999999997542 357889999999999999998843 1 24469999
Q ss_pred Eeecee
Q 042694 239 VSTAYV 244 (554)
Q Consensus 239 vST~~v 244 (554)
+||...
T Consensus 159 isS~a~ 164 (613)
T 3oml_A 159 TSSNSG 164 (613)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 999754
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-09 Score=102.28 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=85.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||+++||||++-||+.+++.|++.|. +|++.++.. .+ ...+...+++|++++ ++.+
T Consensus 9 L~GK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~--------~~-----~~~~~~~~~~Dv~~~------~~v~ 66 (261)
T 4h15_A 9 LRGKRALITAGTKGAGAATVSLFLELGA---QVLTTARAR--------PE-----GLPEELFVEADLTTK------EGCA 66 (261)
T ss_dssp CTTCEEEESCCSSHHHHHHHHHHHHTTC---EEEEEESSC--------CT-----TSCTTTEEECCTTSH------HHHH
T ss_pred CCCCEEEEeccCcHHHHHHHHHHHHcCC---EEEEEECCc--------hh-----CCCcEEEEEcCCCCH------HHHH
Confidence 5799999999999999999999999886 455554321 00 112334689999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCC-----c----hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeecee
Q 042694 188 VIAK-------EVDVIVNSAANTT-----F----DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v 244 (554)
.+.+ .+|++||+|+... + .+.++..+++|+.|+..+.+.+.. + .+-.++|++||...
T Consensus 67 ~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~ 142 (261)
T 4h15_A 67 IVAEATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQR 142 (261)
T ss_dssp HHHHHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred HHHHHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhh
Confidence 5543 6999999998532 2 357889999999999988887753 2 23458999998754
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-08 Score=99.59 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=78.9
Q ss_pred ccCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEcchh-HHHH---HHHcC-C---chhhhc-cCcEEEEEccCC-
Q 042694 108 LKAKNFFVTGA--TGFLAKVLIEKILRTVPDVGKIFIINAEL-FKCL---KQTYG-K---SYQAFM-LSKLVPAVGNVC- 175 (554)
Q Consensus 108 ~~~~~VlITGa--TGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-~~~l---~~~~~-~---~~~~~~-~~kv~~v~GDl~- 175 (554)
+++|+++|||| +|.||++++++|++.|. +|+++++.. .++. +.... . ...... ...+..+.+|+.
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~---~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGA---RVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAF 83 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTTC---EEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTC
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCCC---EEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccc
Confidence 46899999999 89999999999999875 566654321 0110 00000 0 000000 001233444432
Q ss_pred -CCC-CCC-----------CHHHHHHHh-------cCccEEEEcCCCCC-----c----hhhHHHHHHHhchHHHHHHHH
Q 042694 176 -ENN-LGL-----------EEDLADVIA-------KEVDVIVNSAANTT-----F----DERYDIAIDINTRGPCRLMEF 226 (554)
Q Consensus 176 -~~~-lGL-----------s~~~~~~l~-------~~vdiViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~l 226 (554)
++. +.. +++..+.+. ..+|++||+||... + .+.++..+++|+.|+..+++.
T Consensus 84 ~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~ 163 (315)
T 2o2s_A 84 DKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQH 163 (315)
T ss_dssp SSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHH
Confidence 211 000 012223222 37999999998542 2 246788999999999999999
Q ss_pred HHHc-CCCceEEEEeeceec
Q 042694 227 AKQC-NKLKLFVQVSTAYVN 245 (554)
Q Consensus 227 a~~~-~~~k~~v~vST~~v~ 245 (554)
+... .+-.++|++||....
T Consensus 164 ~~~~m~~~g~Iv~isS~~~~ 183 (315)
T 2o2s_A 164 FGPIMNEGGSAVTLSYLAAE 183 (315)
T ss_dssp HSTTEEEEEEEEEEEEGGGT
T ss_pred HHHHHhcCCEEEEEeccccc
Confidence 8642 112589999997653
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-08 Score=112.57 Aligned_cols=161 Identities=13% Similarity=0.113 Sum_probs=112.7
Q ss_pred ccCcEEEEecccccccHHHHHHHH-hhCCCccEEEEEcch-----hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKIL-RTVPDVGKIFIINAE-----LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL-~~~~~V~~i~~~~~~-----~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
-.+++++||||+|-||+.+++.|. +.|. ++|+++.+. ..+.+.++.. ....++.++.+|++++
T Consensus 528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga--~~vvl~~R~~~~~~~~~~~~~~l~-----~~G~~v~~~~~Dvsd~---- 596 (795)
T 3slk_A 528 DAAGTVLVTGGTGALGAEVARHLVIERGV--RNLVLVSRRGPAASGAAELVAQLT-----AYGAEVSLQACDVADR---- 596 (795)
T ss_dssp CTTSEEEEETTTSHHHHHHHHHHHHTSSC--CEEEEEESSGGGSTTHHHHHHHHH-----HTTCEEEEEECCTTCH----
T ss_pred ccccceeeccCCCCcHHHHHHHHHHHcCC--cEEEEeccCccchHHHHHHHHHHH-----hcCCcEEEEEeecCCH----
Confidence 357899999999999999999998 6554 356655432 1222222211 1235789999999998
Q ss_pred CHHHHHHHhc------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccc
Q 042694 182 EEDLADVIAK------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 182 s~~~~~~l~~------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~ 248 (554)
++.+.+.+ .+|+|||+|+.... .+.++..+++|+.|+.++.+++. +.+ .||.+||....-..
T Consensus 597 --~~v~~~~~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~--~~l-~iV~~SS~ag~~g~ 671 (795)
T 3slk_A 597 --ETLAKVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELID--PDV-ALVLFSSVSGVLGS 671 (795)
T ss_dssp --HHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSC--TTS-EEEEEEETHHHHTC
T ss_pred --HHHHHHHHHHHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHh--hCC-EEEEEccHHhcCCC
Confidence 77777765 47999999997542 35788999999999999999883 456 89999997553321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
.+ . .. |..+|.+.+.++..... .|+++..+-||.+-
T Consensus 672 ~g----------------------------~------~~------YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~ 707 (795)
T 3slk_A 672 GG----------------------------Q------GN------YAAANSFLDALAQQRQS-RGLPTRSLAWGPWA 707 (795)
T ss_dssp SS----------------------------C------HH------HHHHHHHHHHHHHHHHH-TTCCEEEEEECCCS
T ss_pred CC----------------------------C------HH------HHHHHHHHHHHHHHHHH-cCCeEEEEECCeEC
Confidence 10 0 11 22334566777665544 48999999988774
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-07 Score=94.63 Aligned_cols=133 Identities=11% Similarity=0.090 Sum_probs=85.1
Q ss_pred cCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEc-ch---hHHHHHHHcCCch-----hhhccCcEEEEEccCCCC
Q 042694 109 KAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIIN-AE---LFKCLKQTYGKSY-----QAFMLSKLVPAVGNVCEN 177 (554)
Q Consensus 109 ~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~-~~---~~~~l~~~~~~~~-----~~~~~~kv~~v~GDl~~~ 177 (554)
++|+++||||++ -||++++++|++.|.. |++.. .+ ...|-.+...... .......+..+.+|++..
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~---Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 77 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVK---IIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFD 77 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCE---EEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCS
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCE---EEEEecCccccccccchHHHHHHHHHHHhhccccccccccccccccc
Confidence 368999999874 8999999999998864 44332 22 2333322211100 011234578899999876
Q ss_pred CCC-CCHH-------------H----HHHHh---cCccEEEEcCCCC-----Cc----hhhHHHHHHHhchHHHHHHHHH
Q 042694 178 NLG-LEED-------------L----ADVIA---KEVDVIVNSAANT-----TF----DERYDIAIDINTRGPCRLMEFA 227 (554)
Q Consensus 178 ~lG-Ls~~-------------~----~~~l~---~~vdiViH~AA~v-----~~----~~~~~~~~~~Nv~gt~~ll~la 227 (554)
... ++++ + .+.+. ..+|++||+||.. .+ .+.++..+++|+.|+..+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 157 (329)
T 3lt0_A 78 TANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYF 157 (329)
T ss_dssp SGGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 221 1111 2 22222 3799999999853 11 3468899999999999999988
Q ss_pred HHc-CCCceEEEEeecee
Q 042694 228 KQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 228 ~~~-~~~k~~v~vST~~v 244 (554)
... ..-.++|++||...
T Consensus 158 ~p~m~~~g~Iv~isS~~~ 175 (329)
T 3lt0_A 158 VNIMKPQSSIISLTYHAS 175 (329)
T ss_dssp GGGEEEEEEEEEEECGGG
T ss_pred HHHHhhCCeEEEEeCccc
Confidence 752 11148999998754
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-08 Score=116.38 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=89.1
Q ss_pred ccCcEEEEeccccc-ccHHHHHHHHhhCCCccEEEEE-cc--hhH----HHHHHHcCCchhhhccCcEEEEEccCCCCCC
Q 042694 108 LKAKNFFVTGATGF-LAKVLIEKILRTVPDVGKIFII-NA--ELF----KCLKQTYGKSYQAFMLSKLVPAVGNVCENNL 179 (554)
Q Consensus 108 ~~~~~VlITGaTGF-lG~~Ll~~LL~~~~~V~~i~~~-~~--~~~----~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~l 179 (554)
+++|+++||||+|. ||+++++.|++.|. +|++. ++ ... +.+.+..+. ...++.++.+|++++
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~GA---~Vvl~~~R~~~~l~~~~~eL~~~~~~-----~g~~v~~v~~DVsd~-- 742 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGGA---KVVVTTSRFSKQVTDYYQSIYAKYGA-----KGSTLIVVPFNQGSK-- 742 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTTC---EEEEEESSCCHHHHHHHHHHHHHHCC-----TTCEEEEEECCTTCH--
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCC---EEEEEecCCHHHHHHHHHHHHHHhhc-----CCCeEEEEEecCCCH--
Confidence 56899999999999 99999999999875 55655 22 112 222222211 134788999999987
Q ss_pred CCCHHHHHHHhc-------------CccEEEEcCCCCCc----------hhhHHHHHHHhchHHHHHHHHHHHcCCC---
Q 042694 180 GLEEDLADVIAK-------------EVDVIVNSAANTTF----------DERYDIAIDINTRGPCRLMEFAKQCNKL--- 233 (554)
Q Consensus 180 GLs~~~~~~l~~-------------~vdiViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~~~~~~--- 233 (554)
++.+.+++ .+|++||+||.... .+.++..+++|+.|+..+++.++..+.+
T Consensus 743 ----~sV~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~ 818 (1887)
T 2uv8_A 743 ----QDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETR 818 (1887)
T ss_dssp ----HHHHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSC
T ss_pred ----HHHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhC
Confidence 66665542 58999999997532 2457889999999999999988543332
Q ss_pred --ceEEEEeecee
Q 042694 234 --KLFVQVSTAYV 244 (554)
Q Consensus 234 --k~~v~vST~~v 244 (554)
.++|++||...
T Consensus 819 ~~G~IVnISS~ag 831 (1887)
T 2uv8_A 819 PAQVILPMSPNHG 831 (1887)
T ss_dssp CEEEEEEECSCTT
T ss_pred CCCEEEEEcChHh
Confidence 48999998643
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.9e-08 Score=97.94 Aligned_cols=243 Identities=13% Similarity=0.053 Sum_probs=117.2
Q ss_pred ccCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEcchh----------HHHHHHH--c--------CCchhhh--c
Q 042694 108 LKAKNFFVTGA--TGFLAKVLIEKILRTVPDVGKIFIINAEL----------FKCLKQT--Y--------GKSYQAF--M 163 (554)
Q Consensus 108 ~~~~~VlITGa--TGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----------~~~l~~~--~--------~~~~~~~--~ 163 (554)
+++|+++|||| +|+||+++++.|++.|. +|++.+... .+++.+. . ....... .
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~---~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGA---RVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVD 83 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTTC---EEEEEECHHHHHHHHC-------------------------------
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCCC---EEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccc
Confidence 46889999999 89999999999999876 455554210 0111100 0 0000000 0
Q ss_pred cCcEEEEEccC--CCCC-CC--CC---------HHHHHHHh-------cCccEEEEcCCCCC-----c----hhhHHHHH
Q 042694 164 LSKLVPAVGNV--CENN-LG--LE---------EDLADVIA-------KEVDVIVNSAANTT-----F----DERYDIAI 213 (554)
Q Consensus 164 ~~kv~~v~GDl--~~~~-lG--Ls---------~~~~~~l~-------~~vdiViH~AA~v~-----~----~~~~~~~~ 213 (554)
......+.+|+ +++. +- ++ ++..+.++ ..+|++||+||... + .+.++..+
T Consensus 84 ~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~ 163 (319)
T 2ptg_A 84 LVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAV 163 (319)
T ss_dssp -CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHH
T ss_pred ccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHH
Confidence 00123444443 2211 00 00 01222222 37999999998531 2 24678899
Q ss_pred HHhchHHHHHHHHHHHc-CCCceEEEEeeceecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhcc
Q 042694 214 DINTRGPCRLMEFAKQC-NKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESK 292 (554)
Q Consensus 214 ~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k 292 (554)
++|+.|+..+++.+... .+-.++|++||........+ .. ..|..+|
T Consensus 164 ~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~----------------------------~~-----~~Y~asK 210 (319)
T 2ptg_A 164 SSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVIPG----------------------------YG-----GGMSSAK 210 (319)
T ss_dssp HHHTHHHHHHHHHHGGGEEEEEEEEEEEECC-------------------------------------------------
T ss_pred hHhhHHHHHHHHHHHHHHhcCceEEEEeccccccccCc----------------------------cc-----hhhHHHH
Confidence 99999999999998752 11258999999765332110 00 0111121
Q ss_pred CCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhH
Q 042694 293 EFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADM 372 (554)
Q Consensus 293 ~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~ 372 (554)
... ..+++.++.+.....|+.+..++||.|-.+.....+.-... ......... ..... + .--+...++
T Consensus 211 aal--~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~-~~~~~~~~~----~~~~~---p--~~r~~~pee 278 (319)
T 2ptg_A 211 AAL--ESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGKAGDK-TFIDLAIDY----SEANA---P--LQKELESDD 278 (319)
T ss_dssp --T--HHHHHHHHHHHHHHHCCEEEEEEECCCC-----------------------------------------CCCHHH
T ss_pred HHH--HHHHHHHHHHhccccCeeEEEEeeCCccChhhhhcccccch-hhHHHHHHH----HhccC---C--CCCCCCHHH
Confidence 111 14455555444322489999999999855322111000000 000000000 00000 0 012457799
Q ss_pred HHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 373 VVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 373 va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+|++++.++.... .--.+.++.+.++
T Consensus 279 vA~~v~~L~s~~~--~~itG~~i~vdGG 304 (319)
T 2ptg_A 279 VGRAALFLLSPLA--RAVTGATLYVDNG 304 (319)
T ss_dssp HHHHHHHHTSGGG--TTCCSCEEEESTT
T ss_pred HHHHHHHHhCccc--CCccCCEEEECCC
Confidence 9999988775422 1234678888776
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-08 Score=117.18 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=88.1
Q ss_pred ccCcEEEEeccccc-ccHHHHHHHHhhCCCccEEEEEc-c--hhH----HHHHHHcCCchhhhccCcEEEEEccCCCCCC
Q 042694 108 LKAKNFFVTGATGF-LAKVLIEKILRTVPDVGKIFIIN-A--ELF----KCLKQTYGKSYQAFMLSKLVPAVGNVCENNL 179 (554)
Q Consensus 108 ~~~~~VlITGaTGF-lG~~Ll~~LL~~~~~V~~i~~~~-~--~~~----~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~l 179 (554)
+++++||||||+|. ||.++++.|++.|. +|++.. + ... +.+.+.... ...++.++.+|++++
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA---~VVl~~~R~~~~l~~~a~eL~~el~~-----~G~~v~~v~~DVsd~-- 719 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGA---KVIVTTSRFSRQVTEYYQGIYARCGA-----RGSQLVVVPFNQGSK-- 719 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTTC---EEEEEESSCCHHHHHHHHHHHHHHCC-----TTCEEEEEECCTTCH--
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCC---EEEEEecCChHHHHHHHHHHHHHhhc-----cCCeEEEEEcCCCCH--
Confidence 57899999999999 99999999999875 456552 2 111 122222211 134788999999987
Q ss_pred CCCHHHHHHHhc-----------CccEEEEcCCCCCc----------hhhHHHHHHHhchHHHHHHHHHHHcCC-----C
Q 042694 180 GLEEDLADVIAK-----------EVDVIVNSAANTTF----------DERYDIAIDINTRGPCRLMEFAKQCNK-----L 233 (554)
Q Consensus 180 GLs~~~~~~l~~-----------~vdiViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~~~~~-----~ 233 (554)
++.+.+++ .+|+|||+||.... .+.++..+++|+.|+..++++++..+. .
T Consensus 720 ----esV~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~ 795 (1878)
T 2uv9_A 720 ----QDVEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPA 795 (1878)
T ss_dssp ----HHHHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCE
T ss_pred ----HHHHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCC
Confidence 76666542 58999999997532 256788999999999999887543222 2
Q ss_pred ceEEEEeecee
Q 042694 234 KLFVQVSTAYV 244 (554)
Q Consensus 234 k~~v~vST~~v 244 (554)
.+||++||...
T Consensus 796 G~IVnISS~ag 806 (1878)
T 2uv9_A 796 QVILPLSPNHG 806 (1878)
T ss_dssp EECCEECSCSS
T ss_pred CEEEEEcchhh
Confidence 58999998643
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-08 Score=115.58 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=87.1
Q ss_pred ccCcEEEEeccccc-ccHHHHHHHHhhCCCccEEEEE-cc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATGF-LAKVLIEKILRTVPDVGKIFII-NA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTGF-lG~~Ll~~LL~~~~~V~~i~~~-~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+++|+|+||||+|. ||+++++.|++.|. +|++. ++ ...+.+.+....... ....++.++.+|++++
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~GA---~VVL~~~R~~e~lee~a~eL~ael~-a~Ga~V~vV~~DVTD~------ 543 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGA---KVVVTTSRFSKQVTDYYQSIYAKYG-AKGSTLIVVPFNQGSK------ 543 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHTC---EEEEEESSCSTTTTTHHHHTTTTTC-CTTCEEEEEECCSSST------
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCcC---EEEEEeCCCHHHHHHHHHHHHHHhh-cCCCeEEEEEeCCCCH------
Confidence 46889999999999 99999999999886 45554 22 111222222211000 0134788999999998
Q ss_pred HHHHHHhc-------------CccEEEEcCCCCCc----------hhhHHHHHHHhchHHHHHHHHHHHcCCC-----ce
Q 042694 184 DLADVIAK-------------EVDVIVNSAANTTF----------DERYDIAIDINTRGPCRLMEFAKQCNKL-----KL 235 (554)
Q Consensus 184 ~~~~~l~~-------------~vdiViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~~~~~~-----k~ 235 (554)
++.+.+++ .+|++||+||.... .+.++..+++|+.|+..++++++..+.+ .+
T Consensus 544 esVeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGr 623 (1688)
T 2pff_A 544 QDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQV 623 (1688)
T ss_dssp THHHHHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEE
T ss_pred HHHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCE
Confidence 66665542 48999999996432 2457888999999999999988432222 47
Q ss_pred EEEEeece
Q 042694 236 FVQVSTAY 243 (554)
Q Consensus 236 ~v~vST~~ 243 (554)
+|++||..
T Consensus 624 IVnISSiA 631 (1688)
T 2pff_A 624 ILPMSPNH 631 (1688)
T ss_dssp CCCCCSCT
T ss_pred EEEEEChH
Confidence 89999864
|
| >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-08 Score=84.54 Aligned_cols=51 Identities=8% Similarity=0.018 Sum_probs=40.5
Q ss_pred cchhHHHHhhcccceeeeec-cccc----cccccCCchhHHHHHHHHHhhhhc-eee-----ccccce
Q 042694 12 APNKFVKAFENNCDLCLLRR-KRSI----MHCQGGGKTTRSSGVSSALKERST-VTD-----TAAGSL 68 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~-v~~-----~~~~~~ 68 (554)
.+.++++ +|++++. ...+ |||++|||||+|+||+++|+++++ +.+ +++||+
T Consensus 26 ~E~~La~------iW~~vL~~~~~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl 87 (110)
T 2cq8_A 26 TAEAVRS------VWQRILPKVLEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTF 87 (110)
T ss_dssp HHHHHHH------HHHHHCSSCSCCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBH
T ss_pred HHHHHHH------HHHHHhCCCCCCCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCH
Confidence 4455666 9997776 4433 999999999999999999999999 887 255555
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.5e-07 Score=98.03 Aligned_cols=124 Identities=16% Similarity=0.172 Sum_probs=86.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccC-CCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNV-CENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl-~~~~lGLs~~~~ 186 (554)
+++|+++||||++-||+.+++.|.+.|. +|++.+....+.+.++... ...++..+.+|+ .+. +...
T Consensus 320 l~gkvalVTGas~GIG~a~A~~la~~Ga---~Vv~~~~~~~~~~~~~i~~-----~g~~~~~~~~Dv~~~~-----~~~~ 386 (604)
T 2et6_A 320 LKDKVVLITGAGAGLGKEYAKWFAKYGA---KVVVNDFKDATKTVDEIKA-----AGGEAWPDQHDVAKDS-----EAII 386 (604)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEECSSCCHHHHHHHHH-----TTCEEEEECCCHHHHH-----HHHH
T ss_pred cCCCeEEEECcchHHHHHHHHHHHHCCC---EEEEEeCccHHHHHHHHHh-----cCCeEEEEEcChHHHH-----HHHH
Confidence 5789999999999999999999999886 5566553222222222110 123567788898 443 2223
Q ss_pred HHHh---cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeecee
Q 042694 187 DVIA---KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYV 244 (554)
Q Consensus 187 ~~l~---~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v 244 (554)
+.+. ..+|++||+||.... .+.++..+++|+.|+..+.+.+.. + .+-.++|++||...
T Consensus 387 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag 457 (604)
T 2et6_A 387 KNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSG 457 (604)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhh
Confidence 3333 479999999997532 256889999999999999888754 2 23358999999754
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.51 E-value=6e-07 Score=90.08 Aligned_cols=121 Identities=14% Similarity=0.062 Sum_probs=80.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|+||||+||+|..++..|+.++. +..|.+++...-.......... ....++..+.+ ..++..
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~-~~ev~l~Di~~~~~~~~dL~~~---~~~~~v~~~~~----------t~d~~~ 72 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPL-VSVLHLYDVVNAPGVTADISHM---DTGAVVRGFLG----------QQQLEA 72 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTT-EEEEEEEESSSHHHHHHHHHTS---CSSCEEEEEES----------HHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEeCCCcHhHHHHhhcc---cccceEEEEeC----------CCCHHH
Confidence 357899999999999999999987653 4567777732111111111000 00112222111 256777
Q ss_pred HhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 189 IAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
.++++|+|||+|+...- ......+...|+.+++++++.+.+. +.+.+++++|.-+
T Consensus 73 al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~SNPv 128 (326)
T 1smk_A 73 ALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISNPV 128 (326)
T ss_dssp HHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSH
T ss_pred HcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECCch
Confidence 77899999999997543 2334567899999999999999985 6788999988544
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-07 Score=94.79 Aligned_cols=121 Identities=12% Similarity=0.027 Sum_probs=79.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCC----CccEEEEEcch--h-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCC
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVP----DVGKIFIINAE--L-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLE 182 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~----~V~~i~~~~~~--~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs 182 (554)
.++|+||||+||+|++++..|+..+. .+..|.++|.. . .+++.....+ ..+.... +.+|+...
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~d-l~~~~~~----~~~~i~~~----- 74 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMME-IDDCAFP----LLAGMTAH----- 74 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHH-HHTTTCT----TEEEEEEE-----
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHH-Hhhhccc----ccCcEEEe-----
Confidence 46899999999999999999987542 12367778754 1 2223211100 0000001 11344433
Q ss_pred HHHHHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCc-eEEEEee
Q 042694 183 EDLADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLK-LFVQVST 241 (554)
Q Consensus 183 ~~~~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~v~vST 241 (554)
.++...++++|+|||+|+..+- .....++...|+.+++++++.+.+..+.+ .|+++|.
T Consensus 75 -~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 75 -ADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp -SSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred -cCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 4445566899999999997653 33456789999999999999999863244 7888874
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=6.7e-07 Score=89.28 Aligned_cols=121 Identities=15% Similarity=0.004 Sum_probs=78.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-HHHHHHHcCCc--hhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-FKCLKQTYGKS--YQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-~~~l~~~~~~~--~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++|+||||+||+|++++..|+..+. +..+.++|.+. .++++...... ........+.+..+| +++.
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~-~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----------d~l~ 69 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----------DENL 69 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----------TTCG
T ss_pred CEEEEECCCChhHHHHHHHHHhCCC-CCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----------cchH
Confidence 4799999999999999999998654 34677777511 12222110000 000011122222222 1122
Q ss_pred HHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 188 VIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
..++++|+|||+|+..+- ......+...|+.+++++++.+++. . +++++++|.-+
T Consensus 70 ~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~-~~~vlv~SNPv 125 (313)
T 1hye_A 70 RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-C-DTKIFVITNPV 125 (313)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEECSSSH
T ss_pred HHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecCcH
Confidence 346799999999997643 3345678999999999999999996 5 88999998544
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.40 E-value=9e-07 Score=74.30 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=67.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.+++|+|+|+ |++|+.+++.|++.+ ..+|++++... +++.... ..++..+.+|+.++ +++..
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g--~~~v~~~~r~~-~~~~~~~--------~~~~~~~~~d~~~~------~~~~~ 65 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSS--NYSVTVADHDL-AALAVLN--------RMGVATKQVDAKDE------AGLAK 65 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCS--SEEEEEEESCH-HHHHHHH--------TTTCEEEECCTTCH------HHHHH
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCC--CceEEEEeCCH-HHHHHHH--------hCCCcEEEecCCCH------HHHHH
Confidence 3578999999 999999999999876 12566665431 2222211 23566788999876 78888
Q ss_pred HhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEE
Q 042694 189 IAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFV 237 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v 237 (554)
+.+++|+|||+++. ..+..+++.|.+ .+.+.|.
T Consensus 66 ~~~~~d~vi~~~~~---------------~~~~~~~~~~~~-~g~~~~~ 98 (118)
T 3ic5_A 66 ALGGFDAVISAAPF---------------FLTPIIAKAAKA-AGAHYFD 98 (118)
T ss_dssp HTTTCSEEEECSCG---------------GGHHHHHHHHHH-TTCEEEC
T ss_pred HHcCCCEEEECCCc---------------hhhHHHHHHHHH-hCCCEEE
Confidence 88999999999853 124678888887 4666554
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-05 Score=81.76 Aligned_cols=123 Identities=9% Similarity=-0.040 Sum_probs=80.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHh-hCCCccEEEEEc--chhH------------HHHHHHcCCchhhhccCcEEEEEc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILR-TVPDVGKIFIIN--AELF------------KCLKQTYGKSYQAFMLSKLVPAVG 172 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~-~~~~V~~i~~~~--~~~~------------~~l~~~~~~~~~~~~~~kv~~v~G 172 (554)
..+|++|||||++-||..+++.|.+ .|.+ |++++ .... +.+.+... ....++..+.+
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~---Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~-----~~G~~a~~i~~ 116 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGAD---TLGVFFERPGEEGKPGTSGWYNSAAFHKFAA-----QKGLYAKSING 116 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCE---EEEEECCCCCBTTBCCCHHHHHHHHHHHHHH-----HTTCCEEEEES
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCE---EEEEeCCchhhhhhcccccchhHHHHHHHHH-----hcCCceEEEEC
Confidence 3578999999999999999999999 8864 44332 1110 01111110 02346788999
Q ss_pred cCCCCCCCCCHHHHHHHhc-------CccEEEEcCCCC----------------C-------------------------
Q 042694 173 NVCENNLGLEEDLADVIAK-------EVDVIVNSAANT----------------T------------------------- 204 (554)
Q Consensus 173 Dl~~~~lGLs~~~~~~l~~-------~vdiViH~AA~v----------------~------------------------- 204 (554)
|++++ ++.+.+.+ .+|++||+||.. .
T Consensus 117 Dvtd~------~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~ 190 (405)
T 3zu3_A 117 DAFSD------EIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPA 190 (405)
T ss_dssp CTTSH------HHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCC
T ss_pred CCCCH------HHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCC
Confidence 99987 66665543 699999999863 1
Q ss_pred chhhHHHHHHHhchHHH-HHHHHHHHcCC---CceEEEEeecee
Q 042694 205 FDERYDIAIDINTRGPC-RLMEFAKQCNK---LKLFVQVSTAYV 244 (554)
Q Consensus 205 ~~~~~~~~~~~Nv~gt~-~ll~la~~~~~---~k~~v~vST~~v 244 (554)
-.+.++..+++|..++. .+++.+....- --++|.+||...
T Consensus 191 t~ee~~~~v~Vn~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~ 234 (405)
T 3zu3_A 191 TQSEIDSTVAVMGGEDWQMWIDALLDAGVLAEGAQTTAFTYLGE 234 (405)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHHHHTCEEEEEEEEEEECCCC
T ss_pred CHHHHHHHHHhhchhHHHHHHHHHHHHhhhhCCcEEEEEeCchh
Confidence 12467788888988876 55555443111 137888888644
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=9.3e-06 Score=83.76 Aligned_cols=121 Identities=12% Similarity=-0.016 Sum_probs=78.7
Q ss_pred ccCcEEEEecccccccHH--HHHHHHhhCCCccEEEEEcc--hh------------HHHHHHHcCCchhhhccCcEEEEE
Q 042694 108 LKAKNFFVTGATGFLAKV--LIEKILRTVPDVGKIFIINA--EL------------FKCLKQTYGKSYQAFMLSKLVPAV 171 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~--Ll~~LL~~~~~V~~i~~~~~--~~------------~~~l~~~~~~~~~~~~~~kv~~v~ 171 (554)
..+|+++||||++-||.. +++.|.+.|. +|+++.. .. .+.+.+... ....++..+.
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga---~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~ 129 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEA---HTIGVSYETGATDRRIGTAGWYNNIFFKEFAK-----KKGLVAKNFI 129 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCC---EEEEEECCCCCCSSCCCCHHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCC---EEEEEecCcchhhhcccccccchHHHHHHHHH-----HcCCcEEEEE
Confidence 568999999999999999 9999987775 4444321 10 122222211 1234688999
Q ss_pred ccCCCCCCCCCHHHHHHHhc-------CccEEEEcCCCC----------------C------------------------
Q 042694 172 GNVCENNLGLEEDLADVIAK-------EVDVIVNSAANT----------------T------------------------ 204 (554)
Q Consensus 172 GDl~~~~lGLs~~~~~~l~~-------~vdiViH~AA~v----------------~------------------------ 204 (554)
+|++++ +..+.+++ .+|++||+||.. .
T Consensus 130 ~Dvtd~------~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~ 203 (418)
T 4eue_A 130 EDAFSN------ETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSS 203 (418)
T ss_dssp SCTTCH------HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECB
T ss_pred eeCCCH------HHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccC
Confidence 999987 66655543 699999999863 0
Q ss_pred -chhhHHHHHHHhchHHH-HHHHHHHHcCCC----ceEEEEeece
Q 042694 205 -FDERYDIAIDINTRGPC-RLMEFAKQCNKL----KLFVQVSTAY 243 (554)
Q Consensus 205 -~~~~~~~~~~~Nv~gt~-~ll~la~~~~~~----k~~v~vST~~ 243 (554)
-.+.++...++|..+.. .+++.+.. +.+ .++|.+||..
T Consensus 204 ~t~e~~~~~~~vn~~~~~~~~~~~l~~-~~~~~~gg~IV~iSSi~ 247 (418)
T 4eue_A 204 ASIEEIEETRKVMGGEDWQEWCEELLY-EDCFSDKATTIAYSYIG 247 (418)
T ss_dssp CCHHHHHHHHHHHSSHHHHHHHHHHHH-TTCEEEEEEEEEEECCC
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHH-HhhhcCCcEEEEEeCch
Confidence 12356677777777665 55555543 222 3678888764
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-06 Score=84.52 Aligned_cols=119 Identities=11% Similarity=-0.059 Sum_probs=78.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhh-hccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQA-FMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~-~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|+||||+||+|..++..|+..+. +..+.++|.+ ..+++.....+.... .....+.+..+| . .
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~-~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~---~----------~ 66 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG---Y----------E 66 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC---G----------G
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCC---H----------H
Confidence 4799999999999999999988654 4467777751 122222111100000 011233333322 1 1
Q ss_pred HhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 189 IAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
.++++|+|||+|+..+- ......+...|+.+++++++.+.+. +.+.+++++|.-+
T Consensus 67 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNPv 122 (303)
T 1o6z_A 67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPV 122 (303)
T ss_dssp GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSH
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCChH
Confidence 25799999999997543 3345577899999999999999985 7889999987544
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-07 Score=76.50 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=33.5
Q ss_pred ceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee
Q 042694 25 DLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 25 ~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+|+++++...+ |||++|||||+|++|+++|++++|+.+
T Consensus 24 i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l 65 (93)
T 4i4d_A 24 IWAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELVDAEL 65 (93)
T ss_dssp HHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCC
Confidence 78866665544 999999999999999999999999988
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.1e-06 Score=89.25 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=80.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-----------hhHHHHHHHcCCchhhhccCcEEEEEccCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-----------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCE 176 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-----------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~ 176 (554)
+++|+++||||++-||+.+++.|++.|. +|++.+. ...+.+.++... ...+.. .|+++
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~Ga---~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~-----~g~~~~---~d~~d 74 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKLGA---KVVVNDLGGALNGQGGNSKAADVVVDEIVK-----NGGVAV---ADYNN 74 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECC-----------CHHHHHHHHHHH-----TTCEEE---EECCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCC---EEEEEeCCccccccccchHHHHHHHHHHHh-----cCCeEE---EEcCC
Confidence 5689999999999999999999999886 4555432 112222222110 111222 46655
Q ss_pred CCCCCCHHHHHHHh---cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeece
Q 042694 177 NNLGLEEDLADVIA---KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAY 243 (554)
Q Consensus 177 ~~lGLs~~~~~~l~---~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~ 243 (554)
..- -++..+.+. ..+|++||+||.... .+.++..+++|+.|+..+.+.+.. | .+-.++|++||..
T Consensus 75 ~~~--~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~a 152 (604)
T 2et6_A 75 VLD--GDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPA 152 (604)
T ss_dssp TTC--HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHH
T ss_pred HHH--HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHH
Confidence 410 012233332 379999999997532 356889999999999999888753 2 1335899999975
Q ss_pred e
Q 042694 244 V 244 (554)
Q Consensus 244 v 244 (554)
.
T Consensus 153 g 153 (604)
T 2et6_A 153 G 153 (604)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-07 Score=75.36 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=38.0
Q ss_pred CCcchhHHHHhhcccceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee
Q 042694 10 SVAPNKFVKAFENNCDLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+..+.++.+ +|++++....+ |||++|||||.|++|.++|++++|+.+
T Consensus 13 ~~~e~~l~~------i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l 63 (91)
T 1dny_A 13 NAVESKLAE------IWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVEL 63 (91)
T ss_dssp SHHHHHHHH------HHHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCC
T ss_pred CHHHHHHHH------HHHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 334455666 88866664433 999999999999999999999999987
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-05 Score=81.37 Aligned_cols=121 Identities=12% Similarity=-0.022 Sum_probs=78.5
Q ss_pred cCcEEEEecccccccHHHHHHHHh-hCCCccEEEEEc--chhH------------HHHHHHcCCchhhhccCcEEEEEcc
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILR-TVPDVGKIFIIN--AELF------------KCLKQTYGKSYQAFMLSKLVPAVGN 173 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~-~~~~V~~i~~~~--~~~~------------~~l~~~~~~~~~~~~~~kv~~v~GD 173 (554)
.+|++|||||++=||..+++.|.+ .|.+ |++++ .... ..+.+... ....++..+.+|
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~---Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~-----~~G~~a~~i~~D 131 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGAD---TLGVFFEKPGTASKAGTAGWYNSAAFDKHAK-----AAGLYSKSINGD 131 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCE---EEEEECCCCCCSSSCCCHHHHHHHHHHHHHH-----HTTCCEEEEESC
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCE---EEEEeCCchhhhhhhcccccchhHHHHHHHH-----hcCCcEEEEEec
Confidence 478999999999999999999999 8864 44432 1110 00111110 022467889999
Q ss_pred CCCCCCCCCHHHHHHHh--------cCccEEEEcCCCC----------------C-------------------------
Q 042694 174 VCENNLGLEEDLADVIA--------KEVDVIVNSAANT----------------T------------------------- 204 (554)
Q Consensus 174 l~~~~lGLs~~~~~~l~--------~~vdiViH~AA~v----------------~------------------------- 204 (554)
++++ +..+.+. ..+|++||+||.. .
T Consensus 132 vtd~------~~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~ 205 (422)
T 3s8m_A 132 AFSD------AARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPA 205 (422)
T ss_dssp TTSH------HHHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCC
T ss_pred CCCH------HHHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 9987 6655543 4689999999861 1
Q ss_pred chhhHHHHHHHhchHHH-HHHHHHHHcCCC----ceEEEEeecee
Q 042694 205 FDERYDIAIDINTRGPC-RLMEFAKQCNKL----KLFVQVSTAYV 244 (554)
Q Consensus 205 ~~~~~~~~~~~Nv~gt~-~ll~la~~~~~~----k~~v~vST~~v 244 (554)
-.+.++...++|..++. .+++.+.. +.. -++|.+||...
T Consensus 206 t~e~~~~~v~Vn~~~~~~~~~~a~~~-~~m~~~gG~IVniSSi~g 249 (422)
T 3s8m_A 206 SAQEIEDTITVMGGQDWELWIDALEG-AGVLADGARSVAFSYIGT 249 (422)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHHH-TTCEEEEEEEEEEEECCC
T ss_pred CHHHHHHHHHhhchhHHHHHHHHHHH-HHHhhCCCEEEEEeCchh
Confidence 12356677777877765 56665543 122 37899988643
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=100.69 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=85.3
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hH---HHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LF---KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~---~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
+-.+++++||||+|-||..+++.|.+.|.+ +|++..+. .. ....+... ....++.++.+|++++
T Consensus 1881 ~~~~k~~lITGgs~GIG~aia~~la~~Ga~--~vvl~~R~~~~~~~~~~~~~~l~-----~~g~~v~~~~~Dvsd~---- 1949 (2512)
T 2vz8_A 1881 CPPHKSYVITGGLGGFGLQLAQWLRLRGAQ--KLVLTSRSGIRTGYQARQVREWR-----RQGVQVLVSTSNASSL---- 1949 (2512)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCC--EEEEECSSCCCSHHHHHHHHHHH-----HTTCEEEEECCCSSSH----
T ss_pred cCCCCEEEEECCCCCHHHHHHHHHHHCCCC--EEEEEeCCCcchHHHHHHHHHHH-----hCCCEEEEEecCCCCH----
Confidence 346899999999999999999999998753 46655321 11 11111110 0234788999999987
Q ss_pred CHHHHHHHhc------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeecee
Q 042694 182 EEDLADVIAK------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYV 244 (554)
Q Consensus 182 s~~~~~~l~~------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v 244 (554)
++.+.+.+ .+|+|||+|+.... .+.++..+++|+.|+.++.+++.. ++...+||.+||...
T Consensus 1950 --~~v~~~~~~~~~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag 2024 (2512)
T 2vz8_A 1950 --DGARSLITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSC 2024 (2512)
T ss_dssp --HHHHHHHHHHHHHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHH
T ss_pred --HHHHHHHHHHHhcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhh
Confidence 66555543 69999999997532 245678889999999999888764 345679999999755
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-05 Score=81.47 Aligned_cols=107 Identities=15% Similarity=0.193 Sum_probs=71.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+++|+||| +|++|+++++.|++.+. +|++.++. .++..+... ...++..+.+|+.+. +++..+
T Consensus 3 ~k~VlViG-aG~iG~~ia~~L~~~G~---~V~v~~R~-~~~a~~la~------~~~~~~~~~~Dv~d~------~~l~~~ 65 (450)
T 1ff9_A 3 TKSVLMLG-SGFVTRPTLDVLTDSGI---KVTVACRT-LESAKKLSA------GVQHSTPISLDVNDD------AALDAE 65 (450)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHTTTC---EEEEEESS-HHHHHHTTT------TCTTEEEEECCTTCH------HHHHHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCcC---EEEEEECC-HHHHHHHHH------hcCCceEEEeecCCH------HHHHHH
Confidence 67899998 79999999999998663 46655543 233332211 112467888999876 778788
Q ss_pred hcCccEEEEcCCCCCchhhHHHHHH--Hhc-------hHHHHHHHHHHHcCCCc
Q 042694 190 AKEVDVIVNSAANTTFDERYDIAID--INT-------RGPCRLMEFAKQCNKLK 234 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~~~~~~~~~--~Nv-------~gt~~ll~la~~~~~~k 234 (554)
++++|+|||+++......-...+.+ .|+ .++.++++.|++. +++
T Consensus 66 l~~~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~a-Gv~ 118 (450)
T 1ff9_A 66 VAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDA-GIT 118 (450)
T ss_dssp HTTSSEEEECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHT-TCE
T ss_pred HcCCcEEEECCccccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHC-CCe
Confidence 8899999999986433221223333 343 3688999999984 654
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=8.7e-06 Score=80.16 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=57.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+||||+|.+|+.+++.|++.|. +|++.++.. .+.+.+.... ..++.++.+|++++ ++
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~---~V~i~~R~~~~~~~l~~~~~~------~~~~~~~~~D~~~~------~~ 181 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGA---EVVLCGRKLDKAQAAADSVNK------RFKVNVTAAETADD------AS 181 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHHH------HHTCCCEEEECCSH------HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEECCHHHHHHHHHHHHh------cCCcEEEEecCCCH------HH
Confidence 4689999999999999999999999774 466655421 2222221110 01345678899877 78
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
...+.+++|+|||+|+.
T Consensus 182 ~~~~~~~~DvlVn~ag~ 198 (287)
T 1lu9_A 182 RAEAVKGAHFVFTAGAI 198 (287)
T ss_dssp HHHHTTTCSEEEECCCT
T ss_pred HHHHHHhCCEEEECCCc
Confidence 88888899999999975
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00011 Score=73.53 Aligned_cols=118 Identities=17% Similarity=0.103 Sum_probs=71.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccE-----EEEEcchh-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGK-----IFIINAEL-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~-----i~~~~~~~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.++|.||||+|++|++++..|+..+. +.. ++++|... .+.++....+. .+....-+..+.+ . .
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~-~~e~~~~~l~L~Di~~~~~~~~g~a~DL-~~~~~~~~~~~~~----~-----~ 71 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSV-FGKDQPIILVLLDITPMMGVLDGVLMEL-QDCALPLLKDVIA----T-----D 71 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTT-TCTTCCEEEEEECCGGGHHHHHHHHHHH-HHTCCTTEEEEEE----E-----S
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCC-ccccCCCEEEEEeCCCccccchhhHhhh-HhhhhcccCCEEE----c-----C
Confidence 46899999999999999999986432 223 77777532 12222211100 0000011111111 1 0
Q ss_pred HHHHHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCc--eEEEEe
Q 042694 184 DLADVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLK--LFVQVS 240 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k--~~v~vS 240 (554)
++++ .++++|+|||+||..+ ..+...++.+.|+..++++++.+.+. ..+ .++.+|
T Consensus 72 ~~~~-~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~-~~~~~~vivvs 129 (333)
T 5mdh_A 72 KEEI-AFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY-AKKSVKVIVVG 129 (333)
T ss_dssp CHHH-HTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH-SCTTCEEEECS
T ss_pred CcHH-HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcC
Confidence 2233 3579999999998653 23455678899999999999999985 444 355444
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0003 Score=69.88 Aligned_cols=114 Identities=14% Similarity=0.059 Sum_probs=72.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
++|.|+||+|++|..++..|+..+. +..|.++|.............. ....++....| ..+++..+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~-~~ev~L~Di~~~~~~a~dL~~~---~~~~~l~~~~~----------t~d~~~a~ 66 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAHTPGVAADLSHI---ETRATVKGYLG----------PEQLPDCL 66 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSSHHHHHHHHTTS---SSSCEEEEEES----------GGGHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CcEEEEEeCCccHHHHHHHhcc---CcCceEEEecC----------CCCHHHHh
Confidence 4799999999999999999887543 4578888754311111111110 00112222211 14566667
Q ss_pred cCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCc-eEEEE
Q 042694 191 KEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLK-LFVQV 239 (554)
Q Consensus 191 ~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~v~v 239 (554)
+++|+||++|+...- .+.-.++...|+..++++++.+.+. ... .++.+
T Consensus 67 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~ 116 (314)
T 1mld_A 67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICII 116 (314)
T ss_dssp TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred CCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEE
Confidence 899999999987542 2333466899999999999988875 344 44443
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0005 Score=59.03 Aligned_cols=73 Identities=11% Similarity=0.196 Sum_probs=48.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+|+ |++|+.+++.|.+.+. .|.+++.. ..+.+++.. .+..+.||..++ +.+.
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~---~v~~~d~~~~~~~~~~~~~----------~~~~~~~d~~~~------~~l~ 63 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGH---DIVLIDIDKDICKKASAEI----------DALVINGDCTKI------KTLE 63 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHC----------SSEEEESCTTSH------HHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHHHHHHHHHhc----------CcEEEEcCCCCH------HHHH
Confidence 468999997 9999999999998775 45555432 222232211 345678888765 5554
Q ss_pred HH-hcCccEEEEcCCC
Q 042694 188 VI-AKEVDVIVNSAAN 202 (554)
Q Consensus 188 ~l-~~~vdiViH~AA~ 202 (554)
.. .+++|+||++...
T Consensus 64 ~~~~~~~d~vi~~~~~ 79 (140)
T 1lss_A 64 DAGIEDADMYIAVTGK 79 (140)
T ss_dssp HTTTTTCSEEEECCSC
T ss_pred HcCcccCCEEEEeeCC
Confidence 33 5689999999753
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=97.54 E-value=1.9e-05 Score=79.17 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=41.9
Q ss_pred CCcchhHHHHhhcccceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee-----cccccee
Q 042694 10 SVAPNKFVKAFENNCDLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLV 69 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~ 69 (554)
+..+.++.+ +|++++..+.+ |||++|||||+|++|+++|++++|+.+ ++.||+.
T Consensus 10 ~~~e~~l~~------~~~~~l~~~~i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~~~t~~ 72 (329)
T 3tej_A 10 AGSETIIAA------AFSSLLGCDVQDADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVA 72 (329)
T ss_dssp TTHHHHHHH------HHHHHHTC-CCSTTCBTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHCCBHH
T ss_pred CHHHHHHHH------HHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHH
Confidence 344556666 89966664434 999999999999999999999999987 2666653
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00023 Score=61.45 Aligned_cols=101 Identities=11% Similarity=0.139 Sum_probs=62.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|+|+|+ |.+|+.+++.|.+.+.+| ++++... +++.... ......+.||..++ +.+..
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v---~~~d~~~-~~~~~~~--------~~~~~~~~~d~~~~------~~l~~ 65 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGHEV---LAVDINE-EKVNAYA--------SYATHAVIANATEE------NELLS 65 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCC---EEEESCH-HHHHTTT--------TTCSEEEECCTTCH------HHHHT
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCCEE---EEEeCCH-HHHHHHH--------HhCCEEEEeCCCCH------HHHHh
Confidence 4678999998 999999999999887654 4444321 2221111 11235678898765 66665
Q ss_pred H-hcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeec
Q 042694 189 I-AKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTA 242 (554)
Q Consensus 189 l-~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~ 242 (554)
+ .+++|+||++++.. . ..| ..+.+.|++. +.++++..++.
T Consensus 66 ~~~~~~d~vi~~~~~~-----~----~~~----~~~~~~~~~~-~~~~ii~~~~~ 106 (144)
T 2hmt_A 66 LGIRNFEYVIVAIGAN-----I----QAS----TLTTLLLKEL-DIPNIWVKAQN 106 (144)
T ss_dssp TTGGGCSEEEECCCSC-----H----HHH----HHHHHHHHHT-TCSEEEEECCS
T ss_pred cCCCCCCEEEECCCCc-----h----HHH----HHHHHHHHHc-CCCeEEEEeCC
Confidence 4 56899999998751 0 122 2356667764 55666555543
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=2.6e-05 Score=85.36 Aligned_cols=46 Identities=11% Similarity=-0.096 Sum_probs=0.0
Q ss_pred ceeeeeccccc----cccccCCchhHHHHHHHHHhh-hhceee-----ccccceee
Q 042694 25 DLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKE-RSTVTD-----TAAGSLVL 70 (554)
Q Consensus 25 ~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~-~~~v~~-----~~~~~~~~ 70 (554)
+|++++..+.+ |||++|||||+|+||+++|++ .+|+.+ ++.||+..
T Consensus 532 iw~~vL~~~~~~~~d~Ff~lGGdSl~a~~l~~~l~~~~~~~~l~~~~~f~~pti~~ 587 (620)
T 4dg8_A 532 LWSELLGCEVGAADQDFFLCGGNSLLALQLVALCQSAGAGANLGLADLQANSRLDQ 587 (620)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHhCCCCCCCCCChhhccCcHHHHHHHHHHHHhhCCCCCcCHHHHhcCCCHHH
Confidence 89977775544 999999999999999999998 788876 37777653
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00068 Score=85.03 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=77.5
Q ss_pred ccCcEEEEeccccc-ccHHHHHHHHhhCCCccEEEEEcc--hh-----HHHHHHHcCCchhhhccCcEEEEEccCCCCCC
Q 042694 108 LKAKNFFVTGATGF-LAKVLIEKILRTVPDVGKIFIINA--EL-----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNL 179 (554)
Q Consensus 108 ~~~~~VlITGaTGF-lG~~Ll~~LL~~~~~V~~i~~~~~--~~-----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~l 179 (554)
++||+++||||++- ||+.+++.|++.|. +|++.+. .. .+.+.+.... ...++..+.+|++++
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA---~Vvi~~r~~~~~~~~~~~~l~~~l~~-----~G~~~~~v~~Dvtd~-- 2203 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGGA---TVIATTSRLDDDRLAFYKQLYRDHAR-----FDATLWVVPANMASY-- 2203 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTTC---EEEEEESCCSHHHHHHHHHHHHHHCC-----TTCEEEEEECCTTCH--
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCCC---EEEEEeCChhhhhhHHHHHHHHHHhh-----cCCeEEEEEecCCCH--
Confidence 68999999999998 99999999999886 4454432 21 2333333322 234788999999988
Q ss_pred CCCHHHHHHHh----c-------CccEEEEcCCC----CC------------chhhHHHHHHHhchHHHHHHHHHHH
Q 042694 180 GLEEDLADVIA----K-------EVDVIVNSAAN----TT------------FDERYDIAIDINTRGPCRLMEFAKQ 229 (554)
Q Consensus 180 GLs~~~~~~l~----~-------~vdiViH~AA~----v~------------~~~~~~~~~~~Nv~gt~~ll~la~~ 229 (554)
++.+.+. + .+|++||+|+. .. ++...+...++|+.++..+++.+..
T Consensus 2204 ----~~v~~lv~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~ 2276 (3089)
T 3zen_D 2204 ----SDIDKLVEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSK 2276 (3089)
T ss_dssp ----HHHHHHHHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766663 2 48999999997 11 2224556689999999988887754
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=97.32 E-value=4.7e-05 Score=81.36 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=43.0
Q ss_pred CCcchhHHHHhhcccceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee-----cccccee
Q 042694 10 SVAPNKFVKAFENNCDLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLV 69 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~ 69 (554)
+..+.++++ +|++++....+ |||++|||||+|++|++++++++|+.+ ++.||+.
T Consensus 9 ~~~e~~l~~------iw~~vL~~~~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~i~~~~ti~ 71 (520)
T 2jgp_A 9 SVWEARLAQ------VWEQVLNVPQVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQ 71 (520)
T ss_dssp SHHHHHHHH------HHHHHHTCSCCCTTCBTTTTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHH
T ss_pred CHHHHHHHH------HHHHHhCCCCCCCCccHHHhcccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHH
Confidence 444566666 89977665544 999999999999999999999999887 3667664
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0003 Score=72.60 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=56.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCc-cEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDV-GKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V-~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+++|+|+|| |++|+.+++.|++.+ ++ ..|++.++. ..+.+.+..+. ....++..+.+|++++ +++
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g-~~~~~V~v~~r~~~~~~~la~~l~~----~~~~~~~~~~~D~~d~------~~l 68 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNR-EVFSHITLASRTLSKCQEIAQSIKA----KGYGEIDITTVDADSI------EEL 68 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCT-TTCCEEEEEESCHHHHHHHHHHHHH----TTCCCCEEEECCTTCH------HHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CCceEEEEEECCHHHHHHHHHHhhh----hcCCceEEEEecCCCH------HHH
Confidence 368999999 999999999999864 33 456665542 22222222210 0113678899999987 888
Q ss_pred HHHhcC--ccEEEEcCCC
Q 042694 187 DVIAKE--VDVIVNSAAN 202 (554)
Q Consensus 187 ~~l~~~--vdiViH~AA~ 202 (554)
+.++++ +|+|||+|+.
T Consensus 69 ~~~l~~~~~DvVin~ag~ 86 (405)
T 4ina_A 69 VALINEVKPQIVLNIALP 86 (405)
T ss_dssp HHHHHHHCCSEEEECSCG
T ss_pred HHHHHhhCCCEEEECCCc
Confidence 888876 9999999874
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00079 Score=70.55 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=67.3
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
+....++++|+|+|| |++|+.+++.|++.+ .. +|++.++. .++.++.... .++..+.+|+.+.
T Consensus 17 ~~~~l~~k~VlIiGA-GgiG~aia~~L~~~~-g~-~V~v~~R~-~~ka~~la~~-------~~~~~~~~D~~d~------ 79 (467)
T 2axq_A 17 IEGRHMGKNVLLLGS-GFVAQPVIDTLAAND-DI-NVTVACRT-LANAQALAKP-------SGSKAISLDVTDD------ 79 (467)
T ss_dssp ------CEEEEEECC-STTHHHHHHHHHTST-TE-EEEEEESS-HHHHHHHHGG-------GTCEEEECCTTCH------
T ss_pred cccCCCCCEEEEECC-hHHHHHHHHHHHhCC-CC-eEEEEECC-HHHHHHHHHh-------cCCcEEEEecCCH------
Confidence 334467889999998 999999999999862 33 56666543 2222221110 1355678898776
Q ss_pred HHHHHHhcCccEEEEcCCCCCchhhHHHHHHH-------hc--hHHHHHHHHHHHcCCC
Q 042694 184 DLADVIAKEVDVIVNSAANTTFDERYDIAIDI-------NT--RGPCRLMEFAKQCNKL 233 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~-------Nv--~gt~~ll~la~~~~~~ 233 (554)
+++..+++++|+|||+++......-...+.+. +. ..+.++++.|++. ++
T Consensus 80 ~~l~~~l~~~DvVIn~tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~a-Gv 137 (467)
T 2axq_A 80 SALDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKA-GI 137 (467)
T ss_dssp HHHHHHHHTSSEEEECSCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHcCCCEEEECCchhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHc-CC
Confidence 67777778999999998863221111222221 11 2457788888774 44
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A | Back alignment and structure |
|---|
Probab=97.26 E-value=9.1e-05 Score=58.51 Aligned_cols=29 Identities=3% Similarity=-0.209 Sum_probs=27.2
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+||++|||||.+++|...|++++|+.+
T Consensus 37 ~~~~~~lG~DSl~~~~l~~~l~~~~~~~i 65 (88)
T 2afd_A 37 EESFDNYDLNSSKALILLGRLEKWLGKEL 65 (88)
T ss_dssp TSCGGGTTCCSTHHHHHHHHHHHHTTSCC
T ss_pred CCCHHHcCccHHHHHHHHHHHHHHHCCCc
Confidence 33999999999999999999999999998
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0012 Score=57.00 Aligned_cols=72 Identities=10% Similarity=0.212 Sum_probs=51.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.+++|+|+|+ |++|+.+++.|.+.+.+| ++++. ...+.+++ ..+.++.||.+++ +.+
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V---~~id~~~~~~~~~~~-----------~~~~~~~gd~~~~------~~l 63 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKV---LAVDKSKEKIELLED-----------EGFDAVIADPTDE------SFY 63 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCE---EEEESCHHHHHHHHH-----------TTCEEEECCTTCH------HHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeE---EEEECCHHHHHHHHH-----------CCCcEEECCCCCH------HHH
Confidence 4578999998 999999999999988754 44443 22222222 2456789999987 666
Q ss_pred HHH-hcCccEEEEcCC
Q 042694 187 DVI-AKEVDVIVNSAA 201 (554)
Q Consensus 187 ~~l-~~~vdiViH~AA 201 (554)
..+ .+++|+||.+.+
T Consensus 64 ~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 64 RSLDLEGVSAVLITGS 79 (141)
T ss_dssp HHSCCTTCSEEEECCS
T ss_pred HhCCcccCCEEEEecC
Confidence 655 358999998876
|
| >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00013 Score=58.73 Aligned_cols=28 Identities=7% Similarity=-0.051 Sum_probs=26.8
Q ss_pred ccccccCCchhHHHHHHHHHhhhhceee
Q 042694 35 IMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 35 ~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+||++|||||.+++|.+.|++++|+.+
T Consensus 45 ~~f~~lG~DSL~a~~l~~~l~~~~g~~l 72 (95)
T 2ju1_A 45 TPFKELGFDSLAAVRLRNLLNAATGLRL 72 (95)
T ss_dssp SCHHHHTCSSHHHHHHHHHHGGGTSSCC
T ss_pred CCHHHcCCcHHHHHHHHHHHHHHHCCCC
Confidence 3999999999999999999999999988
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00055 Score=64.29 Aligned_cols=78 Identities=23% Similarity=0.284 Sum_probs=48.9
Q ss_pred cCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEc
Q 042694 109 KAKNFFVTGA----------------TGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVG 172 (554)
Q Consensus 109 ~~~~VlITGa----------------TGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~G 172 (554)
+||+|||||| ||.+|..+++.+++.|.+| .++..+.- + .+. ....+..+..
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V---~lv~~~~~--~---~~~-----~~~~~~~~~v 68 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEV---CLITTKRA--L---KPE-----PHPNLSIREI 68 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEE---EEEECTTS--C---CCC-----CCTTEEEEEC
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEE---EEEeCCcc--c---ccc-----CCCCeEEEEH
Confidence 5899999999 9999999999999998754 33332210 0 000 0124444433
Q ss_pred cCCCCCCCCCHHHHHH---HhcCccEEEEcCCCCCch
Q 042694 173 NVCENNLGLEEDLADV---IAKEVDVIVNSAANTTFD 206 (554)
Q Consensus 173 Dl~~~~lGLs~~~~~~---l~~~vdiViH~AA~v~~~ 206 (554)
+ .. ++.++. ...++|++||+||...|.
T Consensus 69 ~--s~-----~em~~~v~~~~~~~Dili~aAAvsD~~ 98 (232)
T 2gk4_A 69 T--NT-----KDLLIEMQERVQDYQVLIHSMAVSDYT 98 (232)
T ss_dssp C--SH-----HHHHHHHHHHGGGCSEEEECSBCCSEE
T ss_pred h--HH-----HHHHHHHHHhcCCCCEEEEcCcccccc
Confidence 3 21 122333 335899999999987663
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00091 Score=67.97 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=63.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
.|+|+|.|| |++|+.+++.|.+ .++| .+...+.. ++.+. .+.+..+..|+.++ +.+..+
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~-~~~v-~~~~~~~~---~~~~~---------~~~~~~~~~d~~d~------~~l~~~ 74 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKD-EFDV-YIGDVNNE---NLEKV---------KEFATPLKVDASNF------DKLVEV 74 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTT-TSEE-EEEESCHH---HHHHH---------TTTSEEEECCTTCH------HHHHHH
T ss_pred ccEEEEECC-CHHHHHHHHHHhc-CCCe-EEEEcCHH---HHHHH---------hccCCcEEEecCCH------HHHHHH
Confidence 467999998 9999999998876 4544 33333322 22221 23456688898877 888999
Q ss_pred hcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeecee
Q 042694 190 AKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYV 244 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v 244 (554)
++++|+||+++... + ...++++|.+. + .+|+..++.
T Consensus 75 ~~~~DvVi~~~p~~-~--------------~~~v~~~~~~~-g---~~yvD~s~~ 110 (365)
T 3abi_A 75 MKEFELVIGALPGF-L--------------GFKSIKAAIKS-K---VDMVDVSFM 110 (365)
T ss_dssp HTTCSEEEECCCGG-G--------------HHHHHHHHHHH-T---CEEEECCCC
T ss_pred HhCCCEEEEecCCc-c--------------cchHHHHHHhc-C---cceEeeecc
Confidence 99999999998641 1 12578888875 3 255555443
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0029 Score=55.49 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=53.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|+|+|+ |.+|+.+++.|.+.+.+| .+++.. ..+.+.+.. ...+.++.||.+++ +.+
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V---~vid~~~~~~~~~~~~~~--------~~~~~~i~gd~~~~------~~l 64 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNV---TVISNLPEDDIKQLEQRL--------GDNADVIPGDSNDS------SVL 64 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCE---EEEECCCHHHHHHHHHHH--------CTTCEEEESCTTSH------HHH
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCE---EEEECCChHHHHHHHHhh--------cCCCeEEEcCCCCH------HHH
Confidence 457999996 999999999999887654 444432 122333322 23577899999887 777
Q ss_pred HHH-hcCccEEEEcCCC
Q 042694 187 DVI-AKEVDVIVNSAAN 202 (554)
Q Consensus 187 ~~l-~~~vdiViH~AA~ 202 (554)
... .+++|+|+-+...
T Consensus 65 ~~a~i~~ad~vi~~~~~ 81 (153)
T 1id1_A 65 KKAGIDRCRAILALSDN 81 (153)
T ss_dssp HHHTTTTCSEEEECSSC
T ss_pred HHcChhhCCEEEEecCC
Confidence 765 6799999988654
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00054 Score=54.15 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=27.2
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+||++|+|||.+++|...|++++|+.+
T Consensus 34 ~~~~~~lG~DSL~~~~l~~~l~~~~g~~l 62 (89)
T 2kr5_A 34 DSNFADMGIDSLSSMVIGSRFREDLGLDL 62 (89)
T ss_dssp TCBHHHHTCCHHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHcCccHHHHHHHHHHHHHHHCCCC
Confidence 33999999999999999999999999998
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00059 Score=74.49 Aligned_cols=44 Identities=7% Similarity=-0.071 Sum_probs=32.6
Q ss_pred ceeeeec-cc----cccccccCCchhHHHHHHHHHhhhhceee-----cccccee
Q 042694 25 DLCLLRR-KR----SIMHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLV 69 (554)
Q Consensus 25 ~~~~~~~-~~----~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~ 69 (554)
.|..++. .. +.|||++|||||+|++|+++|++ .++.+ ++.||+.
T Consensus 553 ~~~~~l~~~~~~~~~d~Ff~lGgdSl~a~~l~~~l~~-~~~~~~~~~~~~~pti~ 606 (617)
T 3rg2_A 553 VILPLLDESDEPFDDDNLIDYGLDSVRMMALAARWRK-VHGDIDFVMLAKNPTID 606 (617)
T ss_dssp HHGGGSCTTCCCCTTSCGGGGTCCHHHHHHHHHHHHT-TSTTCCHHHHHHSCCHH
T ss_pred HHHHHhccCCCCCCCCChhhcCccHHHHHHHHHHHHH-hcCCCCHHHHhcCCCHH
Confidence 6775553 22 34999999999999999999997 56665 3666653
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00033 Score=83.33 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=37.7
Q ss_pred ceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee-----cccccee
Q 042694 25 DLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD-----TAAGSLV 69 (554)
Q Consensus 25 ~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~-----~~~~~~~ 69 (554)
+|++++....+ |||++|||||+|++|.++|++++|+.+ ++.||+.
T Consensus 980 ~~~~vL~~~~i~~~~~ff~lGg~Sl~a~~l~~~l~~~~g~~l~~~~~~~~~ti~ 1033 (1304)
T 2vsq_A 980 IWSEVLGRKQIGIHDDFFALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIA 1033 (1304)
T ss_dssp HHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHSSSTTSCCCCSSCTTTCCSHH
T ss_pred HHHHHcCCCccCCCCCHHHhCCChHHHHHHHHHHHHHhCCCCCHHHHHhCCCHH
Confidence 89977765544 999999999999999999999999887 2666653
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0049 Score=61.66 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=69.6
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhh-hccCcEEEEEccCCCCCCCCCHH
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQA-FMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~-~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+|.++++|.|+||+|++|+.++..|+..+. ...|+++|... ++++....+.... ....++.. . .
T Consensus 4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~~-~k~~g~a~DL~~~~~~~~~i~~-t------------~ 68 (343)
T 3fi9_A 4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPFA-VGLEGVAEEIRHCGFEGLNLTF-T------------S 68 (343)
T ss_dssp CCSCSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSCH-HHHHHHHHHHHHHCCTTCCCEE-E------------S
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCCc-hhHHHHHHhhhhCcCCCCceEE-c------------C
Confidence 456788999999999999999999988763 23677776421 2222111000000 00012211 1 2
Q ss_pred HHHHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCce
Q 042694 185 LADVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKL 235 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~ 235 (554)
++...++++|+||++|+..+ ..+.-.++...|+.-.+.+++.+.+. ..+.
T Consensus 69 d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~-~p~a 119 (343)
T 3fi9_A 69 DIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSY-CPDC 119 (343)
T ss_dssp CHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHH-CTTC
T ss_pred CHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCc
Confidence 34444689999999998743 23345678899999999999999875 3444
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0026 Score=59.54 Aligned_cols=76 Identities=13% Similarity=0.233 Sum_probs=49.1
Q ss_pred ccCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEE
Q 042694 108 LKAKNFFVTGA----------------TGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAV 171 (554)
Q Consensus 108 ~~~~~VlITGa----------------TGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~ 171 (554)
++||+|||||| ||.+|..+++.|.+.|.+| +++..+. . .. ....+. .
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V---~l~~~~~--~----l~------~~~g~~--~ 68 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANV---TLVSGPV--S----LP------TPPFVK--R 68 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEE---EEEECSC--C----CC------CCTTEE--E
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEE---EEEECCc--c----cc------cCCCCe--E
Confidence 57899999999 7999999999999998754 3333221 0 00 011222 3
Q ss_pred ccCCCCCCCCCHHHHHHH---hcCccEEEEcCCCCCc
Q 042694 172 GNVCENNLGLEEDLADVI---AKEVDVIVNSAANTTF 205 (554)
Q Consensus 172 GDl~~~~lGLs~~~~~~l---~~~vdiViH~AA~v~~ 205 (554)
.|+... ++.++.+ ..++|++||+||...|
T Consensus 69 ~dv~~~-----~~~~~~v~~~~~~~Dili~~Aav~d~ 100 (226)
T 1u7z_A 69 VDVMTA-----LEMEAAVNASVQQQNIFIGCAAVADY 100 (226)
T ss_dssp EECCSH-----HHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred EccCcH-----HHHHHHHHHhcCCCCEEEECCcccCC
Confidence 466553 2333333 3479999999997655
|
| >2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0015 Score=52.65 Aligned_cols=28 Identities=4% Similarity=-0.041 Sum_probs=26.8
Q ss_pred ccccccCCchhHHHHHHHHHhhhhceee
Q 042694 35 IMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 35 ~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+||++|+|||.+++|.+.|++++|+.+
T Consensus 45 ~~~~~lG~DSl~~~~l~~~l~~~~g~~l 72 (99)
T 2liu_A 45 QKFVDLGLDSIVGVEWTTTINQTYNLNL 72 (99)
T ss_dssp SCHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHhCccHHHHHHHHHHHHHHHCCCc
Confidence 3999999999999999999999999988
|
| >1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=48.70 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=27.0
Q ss_pred ccccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|| ++|+|||.+++|...|+++||+.+
T Consensus 26 ~~~l~~dlG~DSl~~~el~~~le~~fgi~i 55 (78)
T 1l0i_A 26 NASFVEDLGADSLDTVELVMALEEEFDTEI 55 (78)
T ss_dssp TCBTTTTSCCCHHHHHHHHHHHHHHHTCCC
T ss_pred CcchhhhcCCCHHHHHHHHHHHHHHhCCCC
Confidence 33897 999999999999999999999998
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.013 Score=59.07 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=54.9
Q ss_pred ccCcEEEEecccccccHHHHHHHH-hhCCCccEEEEEcch---------------hHHHHHHHcCCchhhhccCcEEEEE
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKIL-RTVPDVGKIFIINAE---------------LFKCLKQTYGKSYQAFMLSKLVPAV 171 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL-~~~~~V~~i~~~~~~---------------~~~~l~~~~~~~~~~~~~~kv~~v~ 171 (554)
..+|+||||||+.=+|......|. +.+-.+ -++..+.+ .+.+..+. ...+...+.
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~v-i~v~~~~~~~~~~~atag~~~~~a~~~~i~~--------~G~~a~~i~ 118 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYGAAT-IGVSFEKAGSETKYGTPGWYNNLAFDEAAKR--------EGLYSVTID 118 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHCCEE-EEEECCCCCCSSSCCCHHHHHHHHHHHHHHH--------HTCCEEEEE
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCCCCE-EEEecCCcccccccccccchhHHHHHHHHHH--------cCCCceeEe
Confidence 357999999999999999888887 556433 11222211 11122221 234678899
Q ss_pred ccCCCCCCCCCHHHHHHHhc-------CccEEEEcCCCC
Q 042694 172 GNVCENNLGLEEDLADVIAK-------EVDVIVNSAANT 203 (554)
Q Consensus 172 GDl~~~~lGLs~~~~~~l~~-------~vdiViH~AA~v 203 (554)
+|++++ +..+.+++ ++|+++|++|..
T Consensus 119 ~Dv~d~------e~i~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 119 GDAFSD------EIKAQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp SCTTSH------HHHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred CCCCCH------HHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 999987 77766653 799999999974
|
| >2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0021 Score=49.80 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=27.2
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|+++|+|||.+++|...|+++||+.+
T Consensus 28 ~~~l~dlG~DSl~~vel~~~le~~fgi~i 56 (82)
T 2ava_A 28 DSEFSKLGADSLDTVEIVMNLEEEFGINV 56 (82)
T ss_dssp SCCSCCCTTCCSCHHHHHHHHHHHTTCCC
T ss_pred CCchhhcCCCHHHHHHHHHHHHHHHCCcc
Confidence 33899999999999999999999999998
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.012 Score=54.80 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=50.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH-
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI- 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l- 189 (554)
|+|+|+|+ |.+|+.+++.|.+.+.+| .++..+....+.+.+.. .+.++.||.+++ +.+...
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v-~vid~~~~~~~~l~~~~----------~~~~i~gd~~~~------~~l~~a~ 62 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGV-VIINKDRELCEEFAKKL----------KATIIHGDGSHK------EILRDAE 62 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCE-EEEESCHHHHHHHHHHS----------SSEEEESCTTSH------HHHHHHT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeE-EEEECCHHHHHHHHHHc----------CCeEEEcCCCCH------HHHHhcC
Confidence 47999996 999999999999987755 33332323233333221 356799999987 666665
Q ss_pred hcCccEEEEcCC
Q 042694 190 AKEVDVIVNSAA 201 (554)
Q Consensus 190 ~~~vdiViH~AA 201 (554)
.+++|+||-+..
T Consensus 63 i~~ad~vi~~~~ 74 (218)
T 3l4b_C 63 VSKNDVVVILTP 74 (218)
T ss_dssp CCTTCEEEECCS
T ss_pred cccCCEEEEecC
Confidence 578999997654
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.027 Score=50.66 Aligned_cols=73 Identities=11% Similarity=0.117 Sum_probs=50.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.+++|+|.| .|.+|..+++.|.+. +.+| ++++. ...+.+++ ..+.++.||.+++ +.
T Consensus 38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V---~vid~~~~~~~~~~~-----------~g~~~~~gd~~~~------~~ 96 (183)
T 3c85_A 38 GHAQVLILG-MGRIGTGAYDELRARYGKIS---LGIEIREEAAQQHRS-----------EGRNVISGDATDP------DF 96 (183)
T ss_dssp TTCSEEEEC-CSHHHHHHHHHHHHHHCSCE---EEEESCHHHHHHHHH-----------TTCCEEECCTTCH------HH
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhccCCeE---EEEECCHHHHHHHHH-----------CCCCEEEcCCCCH------HH
Confidence 356899998 599999999999988 8754 44443 22222221 1345688998766 66
Q ss_pred HHHH--hcCccEEEEcCCC
Q 042694 186 ADVI--AKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l--~~~vdiViH~AA~ 202 (554)
+..+ .+++|+||.+...
T Consensus 97 l~~~~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 97 WERILDTGHVKLVLLAMPH 115 (183)
T ss_dssp HHTBCSCCCCCEEEECCSS
T ss_pred HHhccCCCCCCEEEEeCCC
Confidence 6665 6789999987653
|
| >2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0034 Score=47.77 Aligned_cols=29 Identities=10% Similarity=-0.002 Sum_probs=27.1
Q ss_pred cccc-cccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMH-CQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~F-f~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+| +++|+|||.+++|...++++||+.+
T Consensus 24 ~~~l~~~lG~DSl~~~~l~~~le~~~gi~i 53 (77)
T 2ehs_A 24 EAKFVEDLGADSLDVVELIMAFEEEFGIEI 53 (77)
T ss_dssp TCBTTTTTCCCHHHHHHHHHHHHHHHTCCC
T ss_pred ccchhhccCCCHHHHHHHHHHHHHHhCCcc
Confidence 3489 9999999999999999999999998
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.016 Score=50.72 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=50.2
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
...+++|+|.|+ |.+|..+++.|.+.+. +|++++... +++.. .. ....+..+.+|..++ +.+
T Consensus 16 ~~~~~~v~IiG~-G~iG~~la~~L~~~g~---~V~vid~~~-~~~~~-~~------~~~g~~~~~~d~~~~------~~l 77 (155)
T 2g1u_A 16 KQKSKYIVIFGC-GRLGSLIANLASSSGH---SVVVVDKNE-YAFHR-LN------SEFSGFTVVGDAAEF------ETL 77 (155)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCG-GGGGG-SC------TTCCSEEEESCTTSH------HHH
T ss_pred ccCCCcEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCH-HHHHH-HH------hcCCCcEEEecCCCH------HHH
Confidence 345789999996 9999999999998775 455554321 11111 00 012345677887654 555
Q ss_pred HHH-hcCccEEEEcCCC
Q 042694 187 DVI-AKEVDVIVNSAAN 202 (554)
Q Consensus 187 ~~l-~~~vdiViH~AA~ 202 (554)
... .+++|+||.+.+.
T Consensus 78 ~~~~~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 78 KECGMEKADMVFAFTND 94 (155)
T ss_dssp HTTTGGGCSEEEECSSC
T ss_pred HHcCcccCCEEEEEeCC
Confidence 543 4689999998764
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.028 Score=55.37 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=72.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
++|.|+||+|.+|..++..|..+.+-+..++++|... .+........ .....++..+.++ ++++ -
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~---~~~~~~v~~~~~~----------~~~~-~ 66 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSH---IPTAVKIKGFSGE----------DATP-A 66 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHT---SCSSEEEEEECSS----------CCHH-H
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhC---CCCCceEEEecCC----------CcHH-H
Confidence 4799999999999999988877523345888887542 1111111100 0011122222221 2233 3
Q ss_pred hcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 190 AKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 190 ~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++++|+||-+|+..+ ..+.-.++.+.|+.-.+.+.+...+. ..+.++.+-|
T Consensus 67 ~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvt 118 (312)
T 3hhp_A 67 LEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIIT 118 (312)
T ss_dssp HTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEec
Confidence 479999999998754 34457788999999999999988875 3444444444
|
| >2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0046 Score=47.74 Aligned_cols=28 Identities=18% Similarity=-0.051 Sum_probs=26.5
Q ss_pred cccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 35 IMHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 35 ~~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+|| ++|+|||.+++|...|+++||+.+
T Consensus 31 ~~l~~dlG~DSl~~~~l~~~le~~fgi~i 59 (82)
T 2cnr_A 31 KSFTDDLDVDSLSMVEVVVAAEERFDVKI 59 (82)
T ss_dssp SBTTTTSCCCHHHHHHHHHHHHGGGTBCC
T ss_pred cchhhccCCChHHHHHHHHHHHHHhCCCC
Confidence 3897 999999999999999999999998
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0032 Score=58.59 Aligned_cols=28 Identities=4% Similarity=-0.046 Sum_probs=26.8
Q ss_pred ccccccCCchhHHHHHHHHHhhhhceee
Q 042694 35 IMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 35 ~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+||++|||||.+++|...|++++|+.+
T Consensus 154 ~~f~~lG~DSl~a~el~~~l~~~~g~~l 181 (212)
T 2l22_A 154 AQFLDLGMDSVTGTQWMRGVSRHFSIQL 181 (212)
T ss_dssp CCGGGGCSSSHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHhCCCHHHHHHHHHHHHHHHCCCc
Confidence 3999999999999999999999999988
|
| >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0035 Score=48.70 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=27.9
Q ss_pred ccccccccCCchhHHHHHHHHHhhhhceee
Q 042694 33 RSIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 33 ~~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+.+|+++|+|||.+++|...|+++||+.+
T Consensus 29 ~~~~~~dlG~DSL~~vel~~~le~~fgi~i 58 (83)
T 1or5_A 29 LDTPFVDLGYDSLALLETAAVLQQRYGIAL 58 (83)
T ss_dssp SSSCHHHHSCCHHHHHHHHHHHHTTSCCCC
T ss_pred CCCcHHHhCCCHHHHHHHHHHHHHHHCCcc
Confidence 455799999999999999999999999998
|
| >2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0044 Score=47.82 Aligned_cols=27 Identities=4% Similarity=-0.080 Sum_probs=26.1
Q ss_pred ccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+|| ++|+|||.+++|...|+++||+.+
T Consensus 31 ~l~~dlG~DSl~~~el~~~le~~fgi~i 58 (81)
T 2lol_A 31 RFIEDLKADSLDTVELMMAIEVEYGIDI 58 (81)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred cHHHhcCCcHHHHHHHHHHHHHHHCCCC
Confidence 896 999999999999999999999998
|
| >1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0058 Score=46.89 Aligned_cols=29 Identities=7% Similarity=-0.001 Sum_probs=27.0
Q ss_pred cccc-cccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMH-CQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~F-f~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+| +++|+|||.+++|...|+++||+.+
T Consensus 28 ~~~l~~~lG~DSl~~~~l~~~le~~fgi~i 57 (80)
T 1x3o_A 28 EARFIEDLGADSLDTVELIMGLEDEFGLEI 57 (80)
T ss_dssp TCBTTTTTCCCHHHHHHHHHHHHHHHCCCC
T ss_pred cCcHHhhcCccHHHHHHHHHHHHHHHCCCc
Confidence 3389 9999999999999999999999998
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.015 Score=53.13 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=28.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
-.+++|+||||+|-+|..+++.+...|. +|+..+.
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~---~V~~~~~ 71 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIGA---RIYTTAG 71 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTC---EEEEEES
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcCC---EEEEEeC
Confidence 4678999999999999999999888774 5665543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0074 Score=55.87 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=25.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
++|+|+||+|++|+.+++.|++.+.+ |++++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~---V~~~~ 31 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHE---IVVGS 31 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCE---EEEEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCE---EEEEe
Confidence 47999999999999999999987754 44444
|
| >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0058 Score=48.92 Aligned_cols=29 Identities=7% Similarity=-0.075 Sum_probs=27.4
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|+++|+|||.+++|...|+++||+.+
T Consensus 31 d~~~~dlG~DSL~~vel~~~le~~fgi~i 59 (95)
T 1nq4_A 31 DVAFDALGYDSLALLNTVGRIERDYGVQL 59 (95)
T ss_dssp SSCHHHHTCCSHHHHHHHHHHHHHTCCCS
T ss_pred CCChhhhCCCHHHHHHHHHHHHHHHCCcc
Confidence 34999999999999999999999999998
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0049 Score=57.31 Aligned_cols=27 Identities=4% Similarity=-0.071 Sum_probs=26.5
Q ss_pred cccccCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+||++|+|||.+++|.++|+++||+.+
T Consensus 51 ~f~~lG~DSl~~~el~~~l~~~~g~~l 77 (212)
T 2l22_A 51 RFLELGLDSVIAAQWIREINKHYQLKI 77 (212)
T ss_dssp BHHHHTCCHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999998
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.074 Score=52.68 Aligned_cols=114 Identities=12% Similarity=0.036 Sum_probs=63.1
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHH---HcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQ---TYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~---~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.+++|.|+|| |.+|..++..|+..+. +..++++|.. .++++. ...... . ....+....+|.
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~-~~el~l~D~~-~~k~~g~a~DL~~~~-~-~~~~~~i~~~~~----------- 71 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGI-AQEIGIVDIF-KDKTKGDAIDLEDAL-P-FTSPKKIYSAEY----------- 71 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSC-HHHHHHHHHHHHTTG-G-GSCCCEEEECCG-----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEeCC-hHHHHHHHhhHhhhh-h-hcCCcEEEECcH-----------
Confidence 4578999996 9999999999988653 4578888752 122221 111100 1 113444444432
Q ss_pred HHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 186 ADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
..++++|+||++|+..+- .+.-.++.+.|+.-.+.+.+.+.+. ..+.++.+-|
T Consensus 72 --~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvt 125 (326)
T 3vku_A 72 --SDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAA 125 (326)
T ss_dssp --GGGTTCSEEEECCCCC----------------CHHHHHHHHHTT-TCCSEEEECS
T ss_pred --HHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEcc
Confidence 125799999999987432 3445678899999999999998874 4455554444
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.075 Score=52.66 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=72.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHH---HcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQ---TYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~---~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|.|+|| |.+|..++..|+..+. +..|+++|... ++++. ..... .......+....+|.
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~-~~~l~l~D~~~-~k~~g~a~DL~~~-~~~~~~~v~i~~~~~------------ 68 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGI-TDELVVIDVNK-EKAMGDVMDLNHG-KAFAPQPVKTSYGTY------------ 68 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSCH-HHHHHHHHHHHHT-GGGSSSCCEEEEECG------------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CceEEEEecch-HHHHHHHHHHHhc-cccccCCeEEEeCcH------------
Confidence 578999996 9999999999988764 45788887521 12211 11000 011112344444432
Q ss_pred HHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 187 DVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
..++++|+||.+|+..+- .+.-..+...|+.-.+.+++...+. ..+.++.+-|
T Consensus 69 -~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvt 122 (326)
T 3pqe_A 69 -EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVAT 122 (326)
T ss_dssp -GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred -HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcC
Confidence 134789999999987432 3446678899999999999999875 4455555444
|
| >2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0096 Score=48.59 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=27.4
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|+++|.|||.+++|...|+++||+.+
T Consensus 47 d~~l~dlGlDSL~~veLv~~lE~~fgI~i 75 (105)
T 2jq4_A 47 EADLYAAGLSSFASVQLMLGIEEAFDIEF 75 (105)
T ss_dssp TSCGGGGTCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCHhhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 34999999999999999999999999998
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.059 Score=46.17 Aligned_cols=73 Identities=14% Similarity=0.235 Sum_probs=50.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH-
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI- 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l- 189 (554)
++|+|.|+ |.+|..+++.|.+.+.+| .++-.+....+.+++ ..+.++.||.+++ +.+...
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~~v-~vid~~~~~~~~~~~-----------~g~~~i~gd~~~~------~~l~~a~ 68 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDIPL-VVIETSRTRVDELRE-----------RGVRAVLGNAANE------EIMQLAH 68 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCE-EEEESCHHHHHHHHH-----------TTCEEEESCTTSH------HHHHHTT
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCCCE-EEEECCHHHHHHHHH-----------cCCCEEECCCCCH------HHHHhcC
Confidence 47999996 999999999999887754 333333333333332 2456799999887 666554
Q ss_pred hcCccEEEEcCCC
Q 042694 190 AKEVDVIVNSAAN 202 (554)
Q Consensus 190 ~~~vdiViH~AA~ 202 (554)
.+++|+|+-+...
T Consensus 69 i~~ad~vi~~~~~ 81 (140)
T 3fwz_A 69 LECAKWLILTIPN 81 (140)
T ss_dssp GGGCSEEEECCSC
T ss_pred cccCCEEEEECCC
Confidence 4689999987553
|
| >1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.011 Score=45.53 Aligned_cols=29 Identities=7% Similarity=-0.071 Sum_probs=27.1
Q ss_pred cccc-cccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMH-CQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~F-f~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+| +++|+|||.+++|...|+++||+.+
T Consensus 30 ~~~l~~dlG~DSl~~vel~~~le~~fgi~i 59 (81)
T 1f80_D 30 EASFKEDLGADXLDVVELVMELEDEFDMEI 59 (81)
T ss_dssp TCBHHHHSCCCHHHHHHHHHHHHHHTTCCC
T ss_pred ccchHHHcCCcHHHHHHHHHHHHHHhCCcc
Confidence 3388 9999999999999999999999998
|
| >1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.011 Score=46.04 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=27.3
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|+++|.|||.++.|...|+++||+.+
T Consensus 32 ~~~l~dlG~DSL~~vel~~~le~~fgi~i 60 (86)
T 1af8_A 32 DLRFEDIGYDSLALMETAARLESRYGVSI 60 (86)
T ss_dssp TTSTTTTTCCTTTHHHHHHHHTTTTCSCC
T ss_pred CCChhhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 44899999999999999999999999998
|
| >2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.015 Score=45.97 Aligned_cols=27 Identities=15% Similarity=0.010 Sum_probs=26.5
Q ss_pred cccccCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.|+++|-|||.++.|.++|++.||+.+
T Consensus 32 ~l~dLG~DSL~aVELr~~Le~~fgi~l 58 (91)
T 2cg5_B 32 SLADLGLDALMSVEVRQTLERELNLVL 58 (91)
T ss_dssp BTTTTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHhCCcchHHHHHHHHHHHHHCCCC
Confidence 899999999999999999999999998
|
| >2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.014 Score=47.04 Aligned_cols=28 Identities=7% Similarity=-0.056 Sum_probs=26.4
Q ss_pred cccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 35 IMHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 35 ~~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+|| ++|+|||.+++|...|+++||+.+
T Consensus 39 ~~l~~dlG~DSL~~vel~~~le~~fgi~i 67 (99)
T 2dnw_A 39 SHFMKDLGLDSLDQVEIIMAMEDEFGFEI 67 (99)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHTTCCC
T ss_pred CchhhhcCCCHHHHHHHHHHHHHHHCCCC
Confidence 3886 999999999999999999999998
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.04 Score=55.81 Aligned_cols=74 Identities=9% Similarity=0.233 Sum_probs=50.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..+++|+|+|+ |-+|..+++.|...|. +|++.+... .+.+.+..+ .. +.+|..+. ++
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga---~V~~~d~~~~~~~~~~~~~g--------~~---~~~~~~~~------~~ 222 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGA---QVTILDVNHKRLQYLDDVFG--------GR---VITLTATE------AN 222 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTT--------TS---EEEEECCH------HH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHHhcC--------ce---EEEecCCH------HH
Confidence 46789999999 9999999999988775 566665432 222222221 12 33455444 67
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
+..+.+++|+||++++.
T Consensus 223 l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 223 IKKSVQHADLLIGAVLV 239 (369)
T ss_dssp HHHHHHHCSEEEECCC-
T ss_pred HHHHHhCCCEEEECCCC
Confidence 77777899999999875
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.03 Score=55.95 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=26.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
++|+|.||||++|+.|++.|+++++....++.+.
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~ 40 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA 40 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 5799999999999999999986544333555443
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.26 Score=46.78 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=66.7
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~ 159 (554)
++-.++++|+|.|+.| +|+.+++.|.+.| |+++.++|... .+++++..+
T Consensus 23 q~~l~~~~VlvvG~Gg-lG~~va~~La~~G--vg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np--- 96 (251)
T 1zud_1 23 QQKLLDSQVLIIGLGG-LGTPAALYLAGAG--VGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNP--- 96 (251)
T ss_dssp HHHHHTCEEEEECCST-THHHHHHHHHHTT--CSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCT---
T ss_pred HHHHhcCcEEEEccCH-HHHHHHHHHHHcC--CCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCC---
Confidence 3446788999999866 9999999999865 56888775321 111111111
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
.-++..+..++. ++....+.++.|+||.+... +. .-..+-++|.+. -+++|+.
T Consensus 97 ----~~~v~~~~~~~~-------~~~~~~~~~~~DvVi~~~d~--~~------------~r~~l~~~~~~~--~~p~i~~ 149 (251)
T 1zud_1 97 ----DIQLTALQQRLT-------GEALKDAVARADVVLDCTDN--MA------------TRQEINAACVAL--NTPLITA 149 (251)
T ss_dssp ----TSEEEEECSCCC-------HHHHHHHHHHCSEEEECCSS--HH------------HHHHHHHHHHHT--TCCEEEE
T ss_pred ----CCEEEEEeccCC-------HHHHHHHHhcCCEEEECCCC--HH------------HHHHHHHHHHHh--CCCEEEE
Confidence 124555554443 35667777899999998543 21 112355666652 3578887
Q ss_pred eeceecc
Q 042694 240 STAYVNG 246 (554)
Q Consensus 240 ST~~v~~ 246 (554)
++....|
T Consensus 150 ~~~g~~G 156 (251)
T 1zud_1 150 SAVGFGG 156 (251)
T ss_dssp EEEBTEE
T ss_pred eccccce
Confidence 7654433
|
| >3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.016 Score=44.58 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=27.0
Q ss_pred ccccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|+ ++|.|||.++.|...|+++||+.+
T Consensus 28 d~~l~~dlg~DSl~~vel~~~le~~fgi~i 57 (81)
T 3gzm_A 28 NSNFTKDLGADSLDLVELIMALEEKFNVTI 57 (81)
T ss_dssp TCBHHHHSCCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCcchhhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 44896 999999999999999999999998
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.098 Score=49.75 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=65.6
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---------------------HHHHHHHcCCchhhhcc
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---------------------FKCLKQTYGKSYQAFML 164 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---------------------~~~l~~~~~~~~~~~~~ 164 (554)
+-.++++|+|.|+ |-+|+.+++.|.+.| |++|.++|... .+.+.+..... ...
T Consensus 27 ~~l~~~~VlVvG~-Gg~G~~va~~La~~G--v~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~---np~ 100 (249)
T 1jw9_B 27 EALKDSRVLIVGL-GGLGCAASQYLASAG--VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI---NPH 100 (249)
T ss_dssp HHHHHCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH---CTT
T ss_pred HHHhCCeEEEEee-CHHHHHHHHHHHHcC--CCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHH---CCC
Confidence 3467789999997 669999999999976 56788776432 11111111000 011
Q ss_pred CcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeece
Q 042694 165 SKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAY 243 (554)
Q Consensus 165 ~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~ 243 (554)
-++..+..++. ++....+.+++|+||.+... +. .-..+.++|.+. + +++|+.++..
T Consensus 101 ~~v~~~~~~~~-------~~~~~~~~~~~DvVi~~~d~--~~------------~~~~l~~~~~~~-~-~p~i~~~~~g 156 (249)
T 1jw9_B 101 IAITPVNALLD-------DAELAALIAEHDLVLDCTDN--VA------------VRNQLNAGCFAA-K-VPLVSGAAIR 156 (249)
T ss_dssp SEEEEECSCCC-------HHHHHHHHHTSSEEEECCSS--HH------------HHHHHHHHHHHH-T-CCEEEEEEEB
T ss_pred cEEEEEeccCC-------HhHHHHHHhCCCEEEEeCCC--HH------------HHHHHHHHHHHc-C-CCEEEeeecc
Confidence 24566666554 35566677899999998643 21 112355666663 3 4677765543
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.31 Score=47.31 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=30.5
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
++-.+..+|+|.|+ |-+|+.+++.|.+.| |++|.++|.
T Consensus 31 q~kL~~~~VlVvGa-GGlGs~va~~La~aG--VG~i~lvD~ 68 (292)
T 3h8v_A 31 YEKIRTFAVAIVGV-GGVGSVTAEMLTRCG--IGKLLLFDY 68 (292)
T ss_dssp -CGGGGCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECC
T ss_pred HHHHhCCeEEEECc-CHHHHHHHHHHHHcC--CCEEEEECC
Confidence 34467789999997 559999999999976 678888764
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.41 Score=47.66 Aligned_cols=120 Identities=18% Similarity=0.060 Sum_probs=71.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCc-----cEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDV-----GKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V-----~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.-+|.||||+|.+|+.|+-.|.. ++-+ ..+.++|.. ..+.++-..-+...-........+.++
T Consensus 24 ~vKVaViGAaG~IG~~la~~la~-~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~---------- 92 (345)
T 4h7p_A 24 AVKVAVTGAAGQIGYALVPLIAR-GALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTA---------- 92 (345)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHH-TTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEES----------
T ss_pred CCEEEEECcCcHHHHHHHHHHHh-ccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcC----------
Confidence 45899999999999999987765 3322 267777743 222222110000000011111122221
Q ss_pred HHHHHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 184 DLADVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
+. ...++++|+||-+|+..+ ..+.-.++.+.|..=.+.+.+...+......+|.|-|
T Consensus 93 ~~-~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvs 150 (345)
T 4h7p_A 93 DP-RVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVG 150 (345)
T ss_dssp CH-HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred Ch-HHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeC
Confidence 12 234689999999999754 3456778999999999999998876433334444433
|
| >2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.021 Score=44.02 Aligned_cols=29 Identities=14% Similarity=0.019 Sum_probs=26.7
Q ss_pred ccccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|| ++|.|||.+++|...|+++||+.+
T Consensus 30 d~~l~~dlG~DSl~~vel~~~le~~fgi~i 59 (82)
T 2qnw_A 30 ESNFIKDLDADSLDSVELVMAFEEKFGVSI 59 (82)
T ss_dssp TCBHHHHSCCCHHHHHHHHHHHHHHHTCCC
T ss_pred ccchhhccCCcHHHHHHHHHHHHHHHCCcC
Confidence 34885 999999999999999999999998
|
| >1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.021 Score=47.35 Aligned_cols=29 Identities=3% Similarity=-0.100 Sum_probs=26.8
Q ss_pred ccccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|| ++|+|||.+++|...|+++||+.+
T Consensus 30 d~~l~~dlG~DSL~~vel~~~lE~~fgi~i 59 (115)
T 1klp_A 30 EKSFVDDLDIDSLSMVEIAVQTEDKYGVKI 59 (115)
T ss_dssp TCCTTTTTCSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCchhhccCCCHHHHHHHHHHHHHHHCCCC
Confidence 33896 999999999999999999999998
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.071 Score=52.80 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=46.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.+++|+||||+|-+|..+++.+...|. +|+..+.. ..+.+++ .+. .. ..|..+.++ .+.
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~---~V~~~~~~~~~~~~~~~-~g~-------~~----~~~~~~~~~---~~~ 200 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALGA---KLIGTVGTAQKAQSALK-AGA-------WQ----VINYREEDL---VER 200 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTC---EEEEEESSHHHHHHHHH-HTC-------SE----EEETTTSCH---HHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHH-cCC-------CE----EEECCCccH---HHH
Confidence 3578999999999999999999988774 56665432 2233332 211 11 125544311 123
Q ss_pred HHHHh--cCccEEEEcCC
Q 042694 186 ADVIA--KEVDVIVNSAA 201 (554)
Q Consensus 186 ~~~l~--~~vdiViH~AA 201 (554)
..... .++|+||++++
T Consensus 201 ~~~~~~~~~~D~vi~~~g 218 (327)
T 1qor_A 201 LKEITGGKKVRVVYDSVG 218 (327)
T ss_dssp HHHHTTTCCEEEEEECSC
T ss_pred HHHHhCCCCceEEEECCc
Confidence 33333 26999999998
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.33 Score=48.80 Aligned_cols=120 Identities=19% Similarity=0.164 Sum_probs=71.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCcc-----EEEEEcchh-HHHHHHHcCCchhhh--ccCcEEEEEccCCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVG-----KIFIINAEL-FKCLKQTYGKSYQAF--MLSKLVPAVGNVCENNL 179 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~-----~i~~~~~~~-~~~l~~~~~~~~~~~--~~~kv~~v~GDl~~~~l 179 (554)
-+..+|.||||+|.+|.+++-.|+..+ -+. .++.++.+. .+.++-..-+..... ....+.+. +
T Consensus 30 ~~~~KV~ViGAaG~VG~~la~~l~~~~-l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~--~------ 100 (375)
T 7mdh_A 30 KKLVNIAVSGAAGMISNHLLFKLASGE-VFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--I------ 100 (375)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTT-TTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--S------
T ss_pred CCCCEEEEECCCChHHHHHHHHHHcCC-cCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe--c------
Confidence 356789999999999999999998743 222 233454332 222222111000000 11222221 1
Q ss_pred CCCHHHHHHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 180 GLEEDLADVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 180 GLs~~~~~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
.+++. ++++|+||-+|+..+ ..+.-.++.+.|+.=.+.+.+...+..+...++.+-|
T Consensus 101 ----~~y~~-~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvs 158 (375)
T 7mdh_A 101 ----DPYEV-FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 158 (375)
T ss_dssp ----CHHHH-TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ----CCHHH-hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 23433 479999999988654 3456778899999999999988887423344444444
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.11 Score=51.64 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=47.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.+++|+||||+|-+|..+++.+...|. +|+..+.. ..+.+++ .+. +. ..|..+.++ .+.
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~---~Vi~~~~~~~~~~~~~~-~g~-------~~----~~d~~~~~~---~~~ 205 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLGA---TVIGTVSTEEKAETARK-LGC-------HH----TINYSTQDF---AEV 205 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTTC---EEEEEESSHHHHHHHHH-HTC-------SE----EEETTTSCH---HHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHH-cCC-------CE----EEECCCHHH---HHH
Confidence 3578999999999999999998887664 56665532 2233332 211 11 125544311 133
Q ss_pred HHHHh--cCccEEEEcCCC
Q 042694 186 ADVIA--KEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~--~~vdiViH~AA~ 202 (554)
...+. .++|+||++++.
T Consensus 206 i~~~~~~~~~d~vi~~~g~ 224 (333)
T 1wly_A 206 VREITGGKGVDVVYDSIGK 224 (333)
T ss_dssp HHHHHTTCCEEEEEECSCT
T ss_pred HHHHhCCCCCeEEEECCcH
Confidence 33333 269999999985
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.085 Score=52.38 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=46.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCC-CCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCE-NNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~-~~lGLs~~ 184 (554)
-.+++|+||||+|-+|..+++.+...|. +|++.+.. ..+.+ +..+. . ...|..+ .++ .+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~---~V~~~~~~~~~~~~~-~~~g~--------~---~~~d~~~~~~~---~~ 205 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGC---KVVGAAGSDEKIAYL-KQIGF--------D---AAFNYKTVNSL---EE 205 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTC---EEEEEESSHHHHHHH-HHTTC--------S---EEEETTSCSCH---HH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCC---EEEEEeCCHHHHHHH-HhcCC--------c---EEEecCCHHHH---HH
Confidence 4678999999999999999998887664 56665432 22223 22211 1 1236554 211 12
Q ss_pred HHHHHh-cCccEEEEcCC
Q 042694 185 LADVIA-KEVDVIVNSAA 201 (554)
Q Consensus 185 ~~~~l~-~~vdiViH~AA 201 (554)
....+. .++|+||++++
T Consensus 206 ~~~~~~~~~~d~vi~~~g 223 (333)
T 1v3u_A 206 ALKKASPDGYDCYFDNVG 223 (333)
T ss_dssp HHHHHCTTCEEEEEESSC
T ss_pred HHHHHhCCCCeEEEECCC
Confidence 233332 26999999998
|
| >2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.0042 Score=47.65 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=27.0
Q ss_pred cccc-cccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMH-CQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~F-f~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+| +++|+|||.+++|...|+++||+.+
T Consensus 27 ~~~l~~~lG~DSl~~~~l~~~le~~fgi~i 56 (79)
T 2l3v_A 27 GASFIDDLGADSLDTVELVMAFEEEFGVEI 56 (79)
T ss_dssp TCCHHHHTCCCSSSSSSTTTTHHHHTTCCC
T ss_pred CCccccccCCCHHHHHHHHHHHHHHHCCCC
Confidence 3389 9999999999999999999999998
|
| >3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.031 Score=44.76 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=26.9
Q ss_pred ccccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|+ ++|.|||.++.|...|+++||+.+
T Consensus 45 d~~l~~dLGlDSL~~vel~~~lE~~fgi~i 74 (97)
T 3ejb_A 45 NASFVEDLGADSLDTVELVMALEEEFDTEI 74 (97)
T ss_dssp TCBTTTTTCCCTTHHHHHHHHHHHHTTCCC
T ss_pred CCCchhhcCCCHHHHHHHHHHHHHHHCCCC
Confidence 33897 999999999999999999999998
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.066 Score=53.59 Aligned_cols=33 Identities=18% Similarity=0.397 Sum_probs=26.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
+++|.|.||||++|+.+++.|++. +.+ .++.+.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-p~~-elv~v~ 36 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH-PYL-EVKQVT 36 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-TTE-EEEEEB
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-CCc-EEEEEE
Confidence 468999999999999999999864 666 455443
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.12 Score=51.54 Aligned_cols=77 Identities=10% Similarity=0.135 Sum_probs=46.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCC-CCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCEN-NLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~-~lGLs~~ 184 (554)
-.+++||||||+|-+|..+++.+...+. +|+..+. ...+.+++ .+. . . ..|..+. ++ .+
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga---~V~~~~~~~~~~~~~~~-~g~-------~--~--~~d~~~~~~~---~~ 229 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMGY---RVLGIDGGEGKEELFRS-IGG-------E--V--FIDFTKEKDI---VG 229 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECSTTHHHHHHH-TTC-------C--E--EEETTTCSCH---HH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---cEEEEcCCHHHHHHHHH-cCC-------c--e--EEecCccHhH---HH
Confidence 4678999999999999999988887664 5665542 22233322 211 1 1 1265532 11 12
Q ss_pred HHHHHhc-CccEEEEcCCC
Q 042694 185 LADVIAK-EVDVIVNSAAN 202 (554)
Q Consensus 185 ~~~~l~~-~vdiViH~AA~ 202 (554)
....+.. ++|+||++++.
T Consensus 230 ~~~~~~~~~~D~vi~~~g~ 248 (347)
T 2hcy_A 230 AVLKATDGGAHGVINVSVS 248 (347)
T ss_dssp HHHHHHTSCEEEEEECSSC
T ss_pred HHHHHhCCCCCEEEECCCc
Confidence 2333332 69999999874
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=93.28 E-value=0.44 Score=47.67 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=67.7
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~ 159 (554)
++-.++.+|+|.|+ |-+|+.+++.|.+.| |+++.++|... .+++++..+
T Consensus 113 q~~L~~~~VlvvG~-GglGs~va~~La~aG--vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np--- 186 (353)
T 3h5n_A 113 QDKLKNAKVVILGC-GGIGNHVSVILATSG--IGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNS--- 186 (353)
T ss_dssp HHHHHTCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCT---
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHhCC--CCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCC---
Confidence 56678899999998 559999999999976 67888775321 122222221
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHH-HHHHHHHcCCCceEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCR-LMEFAKQCNKLKLFVQ 238 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~-ll~la~~~~~~k~~v~ 238 (554)
.-+++++..++... .+... .+++|+|+.+... +. .++. +-++|.+. -+++|+
T Consensus 187 ----~v~v~~~~~~i~~~------~~~~~-~~~~DlVvd~~Dn--~~------------~~r~~ln~~c~~~--~~p~i~ 239 (353)
T 3h5n_A 187 ----EISVSEIALNINDY------TDLHK-VPEADIWVVSADH--PF------------NLINWVNKYCVRA--NQPYIN 239 (353)
T ss_dssp ----TSEEEEEECCCCSG------GGGGG-SCCCSEEEECCCC--ST------------THHHHHHHHHHHT--TCCEEE
T ss_pred ----CCeEEEeecccCch------hhhhH-hccCCEEEEecCC--hH------------HHHHHHHHHHHHh--CCCEEE
Confidence 23677788887765 32344 6799999997532 21 1222 44667663 357887
Q ss_pred Eeec
Q 042694 239 VSTA 242 (554)
Q Consensus 239 vST~ 242 (554)
.+..
T Consensus 240 ~~~~ 243 (353)
T 3h5n_A 240 AGYV 243 (353)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7653
|
| >2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.039 Score=42.64 Aligned_cols=29 Identities=7% Similarity=-0.197 Sum_probs=26.9
Q ss_pred cccc-cccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMH-CQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~F-f~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+| .++|.|||.+++|...|+++||+.+
T Consensus 32 ~~~l~~dlG~DSl~~vel~~~le~~fgi~i 61 (84)
T 2kwl_A 32 DSRFVEDLNADSLDIYELLYLLEEAFDDKI 61 (84)
T ss_dssp TTHHHHTSSSCHHHHHHHHHHHHHHHTCCT
T ss_pred CCchhhhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 3388 8999999999999999999999998
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.28 E-value=0.12 Score=51.73 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=27.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
-.+++|+||||+|-+|..+++.+...|. +|+..+
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga---~Vi~~~ 202 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYGL---KILGTA 202 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCCC---EEEEEe
Confidence 3578999999999999999988887664 566654
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=93.14 E-value=0.041 Score=55.16 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=26.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCC-----CccEEEEEc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVP-----DVGKIFIIN 144 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~-----~V~~i~~~~ 144 (554)
+++|+|.||||++|+.|++.|++. + .+ ++..+.
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~-~~~~~~~~-ei~~l~ 46 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGH-PAYADGRL-RIGALT 46 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-HHHHTTSE-EEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-CCCCCccE-EEEEEE
Confidence 478999999999999999999874 4 55 455543
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.12 Score=51.74 Aligned_cols=78 Identities=19% Similarity=0.107 Sum_probs=46.7
Q ss_pred ccC--cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKA--KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~--~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
-.+ ++|+||||+|-+|..+++.+...|. ++|+..+.. ..+.+++..+. . ...|..+.++ .
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga--~~Vi~~~~~~~~~~~~~~~~g~-------~----~~~d~~~~~~---~ 220 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGC--SRVVGICGTHEKCILLTSELGF-------D----AAINYKKDNV---A 220 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCC-------S----EEEETTTSCH---H
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHHHcCC-------c----eEEecCchHH---H
Confidence 357 8999999999999999988887664 256665432 22333322221 1 1125544311 1
Q ss_pred HHHHHHhc-CccEEEEcCC
Q 042694 184 DLADVIAK-EVDVIVNSAA 201 (554)
Q Consensus 184 ~~~~~l~~-~vdiViH~AA 201 (554)
+....+.. ++|+||++++
T Consensus 221 ~~~~~~~~~~~d~vi~~~G 239 (357)
T 2zb4_A 221 EQLRESCPAGVDVYFDNVG 239 (357)
T ss_dssp HHHHHHCTTCEEEEEESCC
T ss_pred HHHHHhcCCCCCEEEECCC
Confidence 22333322 6999999998
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.14 Score=51.33 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=46.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.+++|+||||+|-+|..+++.+...|. +|++.+.. ..+.+++ .+. + ...|..+.++ .+.
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~-~g~-------~----~~~~~~~~~~---~~~ 222 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGA---IPLVTAGSQKKLQMAEK-LGA-------A----AGFNYKKEDF---SEA 222 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHH-HTC-------S----EEEETTTSCH---HHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHH-cCC-------c----EEEecCChHH---HHH
Confidence 3578999999999999999988887664 56665432 2222322 211 1 1124444311 123
Q ss_pred HHHHhc--CccEEEEcCCC
Q 042694 186 ADVIAK--EVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~--~vdiViH~AA~ 202 (554)
...+.. ++|+||++++.
T Consensus 223 ~~~~~~~~~~d~vi~~~G~ 241 (354)
T 2j8z_A 223 TLKFTKGAGVNLILDCIGG 241 (354)
T ss_dssp HHHHTTTSCEEEEEESSCG
T ss_pred HHHHhcCCCceEEEECCCc
Confidence 333332 69999999984
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.17 Score=49.78 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=49.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++|+|| |-+|+.++..|.+.|. ++|++.++.. .++..+.... .......++.+ .++.+. ++
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga--~~V~i~nR~~~~~~~a~~la~~-~~~~~~~~~~~--~~~~~~------~~ 219 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGV--KEISIFNRKDDFYANAEKTVEK-INSKTDCKAQL--FDIEDH------EQ 219 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEECSSTTHHHHHHHHHH-HHHHSSCEEEE--EETTCH------HH
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCC--CEEEEEECCCchHHHHHHHHHH-hhhhcCCceEE--eccchH------HH
Confidence 46899999997 7789999999998764 4677665431 2333322111 00001112332 344333 55
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
+.....++|+||++...
T Consensus 220 l~~~l~~aDiIINaTp~ 236 (315)
T 3tnl_A 220 LRKEIAESVIFTNATGV 236 (315)
T ss_dssp HHHHHHTCSEEEECSST
T ss_pred HHhhhcCCCEEEECccC
Confidence 66667789999998754
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=92.86 E-value=0.1 Score=48.96 Aligned_cols=71 Identities=7% Similarity=-0.014 Sum_probs=49.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
.++|+|.|+ |.+|+.+++.|.+.+. |++++... +++... . ..+.++.||.+++ +.+...
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~----v~vid~~~-~~~~~~--------~-~~~~~i~gd~~~~------~~l~~a 67 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV----FVLAEDEN-VRKKVL--------R-SGANFVHGDPTRV------SDLEKA 67 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE----EEEESCGG-GHHHHH--------H-TTCEEEESCTTCH------HHHHHT
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe----EEEEECCH-HHHHHH--------h-cCCeEEEcCCCCH------HHHHhc
Confidence 457999997 9999999999987653 44454321 122111 1 2467899999887 777665
Q ss_pred -hcCccEEEEcCC
Q 042694 190 -AKEVDVIVNSAA 201 (554)
Q Consensus 190 -~~~vdiViH~AA 201 (554)
.+++|.||-+..
T Consensus 68 ~i~~ad~vi~~~~ 80 (234)
T 2aef_A 68 NVRGARAVIVDLE 80 (234)
T ss_dssp TCTTCSEEEECCS
T ss_pred CcchhcEEEEcCC
Confidence 679999998754
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.45 Score=46.64 Aligned_cols=114 Identities=12% Similarity=0.042 Sum_probs=66.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCch-hhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSY-QAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~-~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++|.|+|| |.+|..++..|+..+. + .|.++|... .+.......... ......++.. ..|.
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~-~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~-t~d~------------- 65 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKEL-G-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG-TNNY------------- 65 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-S-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-ESCG-------------
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-C-eEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE-CCCH-------------
Confidence 58999998 9999999999987653 3 377776421 111111111000 0001122221 1332
Q ss_pred HHhcCccEEEEcCCCCCch-hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeec
Q 042694 188 VIAKEVDVIVNSAANTTFD-ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTA 242 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~ 242 (554)
..++++|+||.+++...-. ..-..+...|+.-.+++.+.+.+. ....++.+.|.
T Consensus 66 ~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~tN 120 (309)
T 1ur5_A 66 ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNN 120 (309)
T ss_dssp GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECCS
T ss_pred HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcCC
Confidence 1257899999999864321 122355677888888898888875 46677766664
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.11 Score=50.14 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDV 137 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V 137 (554)
.++|.|+|+||.+|+.+++.+++. +++
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~-~~~ 31 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALAL-EGV 31 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHS-TTE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-CCC
Confidence 468999999999999999998763 444
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.094 Score=51.38 Aligned_cols=30 Identities=27% Similarity=0.280 Sum_probs=26.5
Q ss_pred ccCcE-EEEe-ccc-----------------ccccHHHHHHHHhhCCCc
Q 042694 108 LKAKN-FFVT-GAT-----------------GFLAKVLIEKILRTVPDV 137 (554)
Q Consensus 108 ~~~~~-VlIT-GaT-----------------GFlG~~Ll~~LL~~~~~V 137 (554)
..|++ |||| ||| |-.|..+++.+++.|.+|
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V 82 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGV 82 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEE
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEE
Confidence 57888 9999 777 999999999999999865
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.55 Score=45.64 Aligned_cols=113 Identities=13% Similarity=0.012 Sum_probs=69.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHH---HcCCchhhh-ccCcEEEEEccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQ---TYGKSYQAF-MLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~---~~~~~~~~~-~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
|+|.|+|| |.+|..++..|+..+. +..|.+++... +++.. ......... ...++.. ..|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~-~~~v~L~D~~~-~~~~g~~~dl~~~~~~~~~~~~i~~-t~d------------- 63 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLD-VDEIALVDIAE-DLAVGEAMDLAHAAAGIDKYPKIVG-GAD------------- 63 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSC-CSEEEEECSSH-HHHHHHHHHHHHHHHTTTCCCEEEE-ESC-------------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEECCh-HHHHHHHHHHHhhhhhcCCCCEEEE-eCC-------------
Confidence 57999999 9999999999888764 45778776432 11110 000000000 1112221 223
Q ss_pred HHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 187 DVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
...++++|+||-+|+..+ ..+.-.++...|+.-.+.+.+...+. +...++.+=|
T Consensus 64 ~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvs 118 (294)
T 1oju_A 64 YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT 118 (294)
T ss_dssp GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeC
Confidence 123578999999998753 23445677899999999999998875 4555544444
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=1.2 Score=43.28 Aligned_cols=114 Identities=13% Similarity=-0.054 Sum_probs=72.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCch--hhhccCcEEEE-EccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSY--QAFMLSKLVPA-VGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~--~~~~~~kv~~v-~GDl~~~~lGLs~~~~~ 187 (554)
|+|-|+|| |.+|+.+...|+.++ -+..+.++|... ++.+-..-+.. ........... .+|..
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~-~~~el~L~Di~~-~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~------------ 65 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAE-DLAVGEAMDLAHAAAGIDKYPKIVGGADYS------------ 65 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSH-HHHHHHHHHHHHHHGGGTCCCEEEEESCGG------------
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCCEEEEEeCCC-CcchhhhhhhhcccccCCCCCeEecCCCHH------------
Confidence 57999996 999999999988764 567888887421 11111100000 00011122222 22321
Q ss_pred HHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 188 VIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
.++++|+|+-.|+..+ ..+.-.++...|..=.+.+.+.+.+. ..+.++.+=|
T Consensus 66 -~~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvs 118 (294)
T 2x0j_A 66 -LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT 118 (294)
T ss_dssp -GGTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred -HhCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 2478999999999754 45577788999999999999998875 5556655554
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.42 Score=47.09 Aligned_cols=115 Identities=13% Similarity=0.069 Sum_probs=69.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHH---HHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLK---QTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~---~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|.|+|| |++|..++..|+..+. +..|+++|... +++. ....... . ....+.+..+| +
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~-~~ev~L~Di~~-~~~~g~~~dl~~~~-~-~~~~~~i~~~~------------~ 69 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFK-EKAIGEAMDINHGL-P-FMGQMSLYAGD------------Y 69 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC----CCHHHHHHTTSC-C-CTTCEEEC--C------------G
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh-HHHHHHHHHHHHhH-H-hcCCeEEEECC------------H
Confidence 468999998 9999999999988653 56788887431 1111 1111100 0 11222222111 1
Q ss_pred HHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeece
Q 042694 187 DVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAY 243 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~ 243 (554)
+ -++++|+||.+++... ....-.++...|+.-.+++++...+. ....++.+.|.-
T Consensus 70 ~-a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 125 (318)
T 1y6j_A 70 S-DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNP 125 (318)
T ss_dssp G-GGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSS
T ss_pred H-HhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 1 2579999999998643 22334467788999999999999875 456666665543
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.28 Score=47.10 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=26.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
+++|.|.||+|.+|+.+++.+.+ .++++-+-.++
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~-~~~~eLv~~~d 40 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLA-APDATLVGALD 40 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHH-CTTEEEEEEBC
T ss_pred ccEEEEECCCCHHHHHHHHHHHh-CCCCEEEEEEE
Confidence 46899999999999999999987 46663333444
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.15 Score=50.71 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=46.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCC-CCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCEN-NLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~-~lGLs~~ 184 (554)
-.+++|+|+||+|-+|..+++.+...|. +|+..+.. ..+.+++..+. .. . .|..+. ++ .+
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~---~V~~~~~~~~~~~~~~~~~g~-------~~--~--~d~~~~~~~---~~ 216 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGC---YVVGSAGSKEKVDLLKTKFGF-------DD--A--FNYKEESDL---TA 216 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHTSCC-------SE--E--EETTSCSCS---HH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHcCC-------ce--E--EecCCHHHH---HH
Confidence 3578999999999999999988877663 56665532 22333322221 11 1 254432 11 23
Q ss_pred HHHHHh-cCccEEEEcCC
Q 042694 185 LADVIA-KEVDVIVNSAA 201 (554)
Q Consensus 185 ~~~~l~-~~vdiViH~AA 201 (554)
....+. .++|+||++++
T Consensus 217 ~~~~~~~~~~d~vi~~~g 234 (345)
T 2j3h_A 217 ALKRCFPNGIDIYFENVG 234 (345)
T ss_dssp HHHHHCTTCEEEEEESSC
T ss_pred HHHHHhCCCCcEEEECCC
Confidence 333333 36999999987
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.32 Score=48.38 Aligned_cols=76 Identities=12% Similarity=0.123 Sum_probs=46.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.+++|||+||+|-+|..+++.+...+. +|+..+. ...+.+++ .+. +. . .|..++++ .+.
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~---~Vi~~~~~~~~~~~~~~-~ga-------~~--~--~d~~~~~~---~~~ 226 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFGA---RVIATAGSEDKLRRAKA-LGA-------DE--T--VNYTHPDW---PKE 226 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTTC---EEEEEESSHHHHHHHHH-HTC-------SE--E--EETTSTTH---HHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHh-cCC-------CE--E--EcCCcccH---HHH
Confidence 3578999999999999999988877664 5665543 22233332 211 11 1 25554411 133
Q ss_pred HHHHh--cCccEEEEcCC
Q 042694 186 ADVIA--KEVDVIVNSAA 201 (554)
Q Consensus 186 ~~~l~--~~vdiViH~AA 201 (554)
+..+. .++|+||++++
T Consensus 227 ~~~~~~~~~~d~vi~~~g 244 (343)
T 2eih_A 227 VRRLTGGKGADKVVDHTG 244 (343)
T ss_dssp HHHHTTTTCEEEEEESSC
T ss_pred HHHHhCCCCceEEEECCC
Confidence 44443 26999999998
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=91.81 E-value=0.2 Score=49.69 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=45.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.|++|+||||+|-+|..+++.+...|. +|+..+.. ..+.+.+..+. .. ..|..++++ .+.
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~~~g~-------~~----~~~~~~~~~---~~~ 210 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGC---RVVGIAGGAEKCRFLVEELGF-------DG----AIDYKNEDL---AAG 210 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHTTCC-------SE----EEETTTSCH---HHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHcCC-------CE----EEECCCHHH---HHH
Confidence 4688999999999999999888776664 56665532 22233122221 11 124443311 122
Q ss_pred HHHHh-cCccEEEEcCCC
Q 042694 186 ADVIA-KEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~-~~vdiViH~AA~ 202 (554)
...+. .++|+||++++.
T Consensus 211 ~~~~~~~~~d~vi~~~g~ 228 (336)
T 4b7c_A 211 LKRECPKGIDVFFDNVGG 228 (336)
T ss_dssp HHHHCTTCEEEEEESSCH
T ss_pred HHHhcCCCceEEEECCCc
Confidence 33332 369999999873
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.097 Score=44.95 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=43.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.+++|+|.|+ |.+|+.++..|.+.+ ++ |++.+.. ..+.+.+..+ +... .. ++.
T Consensus 20 ~~~~v~iiG~-G~iG~~~a~~l~~~g--~~-v~v~~r~~~~~~~~a~~~~----------~~~~-----~~------~~~ 74 (144)
T 3oj0_A 20 GGNKILLVGN-GMLASEIAPYFSYPQ--YK-VTVAGRNIDHVRAFAEKYE----------YEYV-----LI------NDI 74 (144)
T ss_dssp CCCEEEEECC-SHHHHHHGGGCCTTT--CE-EEEEESCHHHHHHHHHHHT----------CEEE-----EC------SCH
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCC--CE-EEEEcCCHHHHHHHHHHhC----------CceE-----ee------cCH
Confidence 3889999996 999999999998754 43 6655542 1222222221 1111 11 234
Q ss_pred HHHhcCccEEEEcCCCC
Q 042694 187 DVIAKEVDVIVNSAANT 203 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v 203 (554)
....+++|+||.+.+..
T Consensus 75 ~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 75 DSLIKNNDVIITATSSK 91 (144)
T ss_dssp HHHHHTCSEEEECSCCS
T ss_pred HHHhcCCCEEEEeCCCC
Confidence 45567899999988764
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=91.73 E-value=0.28 Score=49.30 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=26.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
.+|.|.||||++|..|++.|.+..+....+..+.+
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as 37 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS 37 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEEC
T ss_pred cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEc
Confidence 58999999999999999988774333336666643
|
| >2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.032 Score=45.23 Aligned_cols=27 Identities=19% Similarity=-0.037 Sum_probs=26.4
Q ss_pred cccccCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+|.++|.|||.++.|...|+++||+.+
T Consensus 51 ~l~dLGlDSL~~veL~~~lE~~fgi~i 77 (103)
T 2lte_A 51 RMEDLAFDSLVVSELSLKLRKEFGVTG 77 (103)
Confidence 899999999999999999999999998
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=91.69 E-value=1 Score=44.36 Aligned_cols=114 Identities=16% Similarity=0.023 Sum_probs=68.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCch-hhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSY-QAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~-~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|.|+|| |.+|..++..|+..+. . .|++++... .+.......... ......++.. ..| +
T Consensus 5 ~~kI~iiGa-G~vG~~~a~~l~~~~~-~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~-t~d------------~ 68 (321)
T 3p7m_A 5 RKKITLVGA-GNIGGTLAHLALIKQL-G-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG-TND------------Y 68 (321)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-ESC------------G
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-c-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE-cCC------------H
Confidence 468999995 9999999999887654 3 777776421 111111111100 0001122221 222 1
Q ss_pred HHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 187 DVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
..++++|+||.+|+..+ ......++...|+.-.+.+++...+. ....++.+-|
T Consensus 69 -~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvt 122 (321)
T 3p7m_A 69 -KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN-CPNAFVICIT 122 (321)
T ss_dssp -GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred -HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHH-CCCcEEEEec
Confidence 23578999999998653 23345677888999999999998875 3444444434
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.5 Score=46.98 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=45.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.|++|+|+||+|-+|...+..+...|. +|+..+. ...+.+++. +. +. ++ |.. .++ .+.
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~~-ga-------~~--v~--~~~-~~~---~~~ 218 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGA---KVIAVVNRTAATEFVKSV-GA-------DI--VL--PLE-EGW---AKA 218 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSGGGHHHHHHH-TC-------SE--EE--ESS-TTH---HHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHhc-CC-------cE--Ee--cCc-hhH---HHH
Confidence 3588999999999999999888877664 5555532 333444432 21 11 12 222 211 234
Q ss_pred HHHHhc--CccEEEEcCCC
Q 042694 186 ADVIAK--EVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~--~vdiViH~AA~ 202 (554)
...+.. ++|+||++++.
T Consensus 219 v~~~~~~~g~Dvvid~~g~ 237 (342)
T 4eye_A 219 VREATGGAGVDMVVDPIGG 237 (342)
T ss_dssp HHHHTTTSCEEEEEESCC-
T ss_pred HHHHhCCCCceEEEECCch
Confidence 444443 69999999985
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=91.57 E-value=1.5 Score=42.92 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=70.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-HHHHHHHcCCch--hhh--ccCcEEEEEccCCCCCCCCCHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-FKCLKQTYGKSY--QAF--MLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-~~~l~~~~~~~~--~~~--~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++|.|+|+ |.+|..++..|+..+. ..|.+++... -++.+....+.. ... ...++.. ..|
T Consensus 8 ~~kv~ViGa-G~vG~~ia~~l~~~g~--~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~-t~d----------- 72 (315)
T 3tl2_A 8 RKKVSVIGA-GFTGATTAFLLAQKEL--ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG-TSD----------- 72 (315)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE-ESC-----------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE-cCC-----------
Confidence 468999997 9999999999988764 5778877542 222221110000 000 1123321 122
Q ss_pred HHHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 185 LADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
+ .-++++|+||-+|+..+- .+.-.++...|+.-.+.+.+...+. ....++.+=|
T Consensus 73 -~-~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvs 127 (315)
T 3tl2_A 73 -Y-ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLT 127 (315)
T ss_dssp -G-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred -H-HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECC
Confidence 1 134799999999987543 3456688899999999999988875 3444444433
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.28 Score=49.04 Aligned_cols=77 Identities=10% Similarity=0.173 Sum_probs=46.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.+++|+|+||+|-+|...++.+...|. +|+..+. ...+.+++ .+. +.+ .|..+.++ .+.
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~-lGa-------~~~----~~~~~~~~---~~~ 227 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFGA---EVYATAGSTGKCEACER-LGA-------KRG----INYRSEDF---AAV 227 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHH-HTC-------SEE----EETTTSCH---HHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHh-cCC-------CEE----EeCCchHH---HHH
Confidence 3578999999999999999988877664 5666553 22333332 211 111 23333311 122
Q ss_pred HHHHh-cCccEEEEcCCC
Q 042694 186 ADVIA-KEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~-~~vdiViH~AA~ 202 (554)
...+. .++|+||++++.
T Consensus 228 ~~~~~~~g~Dvvid~~g~ 245 (353)
T 4dup_A 228 IKAETGQGVDIILDMIGA 245 (353)
T ss_dssp HHHHHSSCEEEEEESCCG
T ss_pred HHHHhCCCceEEEECCCH
Confidence 33322 379999999984
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=1.4 Score=43.56 Aligned_cols=111 Identities=13% Similarity=0.035 Sum_probs=68.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHH---cCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQT---YGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~---~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|.|+|| |.+|..++..|+..+ -+..|+++|.. .++++.. ..... . ....+.+..+| . +
T Consensus 9 ~~KI~IiGa-G~vG~~la~~l~~~~-~~~el~L~Di~-~~~~~g~~~dl~~~~-~-~~~~~~i~~~~---~------~-- 72 (326)
T 2zqz_A 9 HQKVILVGD-GAVGSSYAYAMVLQG-IAQEIGIVDIF-KDKTKGDAIDLSNAL-P-FTSPKKIYSAE---Y------S-- 72 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSC-HHHHHHHHHHHHTTG-G-GSCCCEEEECC---G------G--
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCC-CCCEEEEEeCC-chHhHHHHHHHHHHH-H-hcCCeEEEECC---H------H--
Confidence 468999998 999999999988765 35688888753 1222221 11100 1 11333333322 1 2
Q ss_pred HHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 187 DVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
-++++|+||.+|+...- ...-..+...|+.-.+.+.+...+. ....++.+
T Consensus 73 --a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 123 (326)
T 2zqz_A 73 --DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLV 123 (326)
T ss_dssp --GGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEE
T ss_pred --HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence 25799999999986432 2234467788999999999888775 34444444
|
| >1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A | Back alignment and structure |
|---|
Probab=91.43 E-value=0.1 Score=39.94 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=27.4
Q ss_pred cccccccC-CchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGG-GKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~G-G~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|++.| -|||.++.|...|.++||+.+
T Consensus 27 d~~l~~~g~lDSl~~velv~~lE~~fgi~i 56 (80)
T 1dv5_A 27 DLNLFETGLLDSMGTVQLLLELQSQFGVDA 56 (80)
T ss_dssp SCCSSTTSSCCSHHHHHHHHHHTTTSCCCC
T ss_pred CcchhhccCcChHHHHHHHHHHHHHhCCcC
Confidence 44999999 999999999999999999999
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.041 Score=54.19 Aligned_cols=22 Identities=5% Similarity=-0.073 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHhhhhceee
Q 042694 41 GGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 41 GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
|||||+|+||.++|++++|+.+
T Consensus 1 GGdSL~a~~l~~rl~~~~g~~l 22 (316)
T 2px6_A 1 GSHNLACPTPKEDGLAQQQTQL 22 (316)
T ss_dssp ----------------------
T ss_pred CCchHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999887
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=91.32 E-value=0.68 Score=49.81 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=69.5
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~ 159 (554)
++.....+|+|.|+ |-+|..+++.|.+.| |++|.++|... .+++++..
T Consensus 12 Q~kL~~s~VlVVGa-GGLGsevak~La~aG--VG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iN---- 84 (640)
T 1y8q_B 12 AEAVAGGRVLVVGA-GGIGCELLKNLVLTG--FSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFY---- 84 (640)
T ss_dssp HHHHHHCEEEEECC-SHHHHHHHHHHHHHT--CCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTC----
T ss_pred HHHHhcCeEEEECc-CHHHHHHHHHHHHcC--CCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHC----
Confidence 44456789999998 559999999999976 67888775321 11111111
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
..-+|.++..++....+ ...+.+++|+|+.+... + ..-..+-++|... -+++|+.
T Consensus 85 ---P~v~V~a~~~~i~~~~~------~~~~~~~~DlVvda~Dn--~------------~aR~~ln~~c~~~--~iPlI~~ 139 (640)
T 1y8q_B 85 ---PKANIVAYHDSIMNPDY------NVEFFRQFILVMNALDN--R------------AARNHVNRMCLAA--DVPLIES 139 (640)
T ss_dssp ---TTCEEEEEESCTTSTTS------CHHHHTTCSEEEECCSC--H------------HHHHHHHHHHHHH--TCCEEEE
T ss_pred ---CCCeEEEEecccchhhh------hHhhhcCCCEEEECCCC--H------------HHHHHHHHHHHHc--CCCEEEE
Confidence 12367788888865422 13456899999998432 1 1223355666663 3578887
Q ss_pred eeceeccc
Q 042694 240 STAYVNGQ 247 (554)
Q Consensus 240 ST~~v~~~ 247 (554)
++.+..|.
T Consensus 140 g~~G~~G~ 147 (640)
T 1y8q_B 140 GTAGYLGQ 147 (640)
T ss_dssp EEETTEEE
T ss_pred EEecccce
Confidence 77655443
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=1.1 Score=44.76 Aligned_cols=109 Identities=10% Similarity=0.143 Sum_probs=69.4
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~ 159 (554)
++-.+..+|+|.|+.| +|+.+++.|.+.| |+++.++|... .+++++..+
T Consensus 31 q~~L~~~~VlivG~GG-lG~~ia~~La~~G--vg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp--- 104 (346)
T 1y8q_A 31 QKRLRASRVLLVGLKG-LGAEIAKNLILAG--VKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNP--- 104 (346)
T ss_dssp HHHHHTCEEEEECCSH-HHHHHHHHHHHHT--CSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCT---
T ss_pred HHHHhCCeEEEECCCH-HHHHHHHHHHHcC--CCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCC---
Confidence 3446778999999755 9999999999876 67888774211 122222221
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
.-++.++..++... ...+.++.|+||.+... + ..-..+-++|.+. -++||+.
T Consensus 105 ----~v~v~~~~~~~~~~--------~~~~~~~~dvVv~~~d~--~------------~~r~~ln~~~~~~--~ip~i~~ 156 (346)
T 1y8q_A 105 ----MVDVKVDTEDIEKK--------PESFFTQFDAVCLTCCS--R------------DVIVKVDQICHKN--SIKFFTG 156 (346)
T ss_dssp ----TSEEEEECSCGGGC--------CHHHHTTCSEEEEESCC--H------------HHHHHHHHHHHHT--TCEEEEE
T ss_pred ----CeEEEEEecccCcc--------hHHHhcCCCEEEEcCCC--H------------HHHHHHHHHHHHc--CCCEEEE
Confidence 23567777766542 13456789999987432 1 1123456677763 3688888
Q ss_pred eeceeccc
Q 042694 240 STAYVNGQ 247 (554)
Q Consensus 240 ST~~v~~~ 247 (554)
++.+.+|.
T Consensus 157 ~~~G~~G~ 164 (346)
T 1y8q_A 157 DVFGYHGY 164 (346)
T ss_dssp EEEBTEEE
T ss_pred eecccEEE
Confidence 87776664
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.34 Score=47.80 Aligned_cols=77 Identities=9% Similarity=0.056 Sum_probs=46.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.|++|+|+||+|-+|...+..+...|. +|+..+. ...+.+++ .+. +. ++ |..+.++ .+.
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~-~Ga-------~~--~~--~~~~~~~---~~~ 200 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALGA---KLIGTVSSPEKAAHAKA-LGA-------WE--TI--DYSHEDV---AKR 200 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESSHHHHHHHHH-HTC-------SE--EE--ETTTSCH---HHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHH-cCC-------CE--EE--eCCCccH---HHH
Confidence 3588999999999999999888877764 5665543 22233332 211 11 12 3333311 133
Q ss_pred HHHHhc--CccEEEEcCCC
Q 042694 186 ADVIAK--EVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~--~vdiViH~AA~ 202 (554)
...+.. ++|+||++++.
T Consensus 201 ~~~~~~~~g~Dvvid~~g~ 219 (325)
T 3jyn_A 201 VLELTDGKKCPVVYDGVGQ 219 (325)
T ss_dssp HHHHTTTCCEEEEEESSCG
T ss_pred HHHHhCCCCceEEEECCCh
Confidence 444433 69999999885
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=0.7 Score=47.30 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=51.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+++|+|.|+ |-+|+.+++.|.+.+..| .++-.+....+.+++ ..+.++.||.+++ +.+...
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~v-vvId~d~~~v~~~~~-----------~g~~vi~GDat~~------~~L~~a 64 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKM-VVLDHDPDHIETLRK-----------FGMKVFYGDATRM------DLLESA 64 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCE-EEEECCHHHHHHHHH-----------TTCCCEESCTTCH------HHHHHT
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCE-EEEECCHHHHHHHHh-----------CCCeEEEcCCCCH------HHHHhc
Confidence 457999996 999999999999877654 333233333333332 1345799999988 777666
Q ss_pred -hcCccEEEEcCC
Q 042694 190 -AKEVDVIVNSAA 201 (554)
Q Consensus 190 -~~~vdiViH~AA 201 (554)
++++|+||-+..
T Consensus 65 gi~~A~~viv~~~ 77 (413)
T 3l9w_A 65 GAAKAEVLINAID 77 (413)
T ss_dssp TTTTCSEEEECCS
T ss_pred CCCccCEEEECCC
Confidence 578999987754
|
| >1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=91.16 E-value=0.12 Score=41.46 Aligned_cols=29 Identities=3% Similarity=-0.112 Sum_probs=27.2
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|.++|-|||.++.|...|+++||+.+
T Consensus 40 d~~L~dLGlDSL~~veL~~~LE~~fgi~i 68 (100)
T 1vku_A 40 ENTFKELGFDSIDVIDLVMFFEDEFALRI 68 (100)
T ss_dssp TSBTTTTTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHcCCchHHHHHHHHHHHHHHCCCC
Confidence 44889999999999999999999999998
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=91.13 E-value=1.5 Score=42.84 Aligned_cols=110 Identities=9% Similarity=0.030 Sum_probs=69.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHH---cCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQT---YGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~---~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++|.|+|| |.+|..++..|+..+ -+..|.++|... ++++.. ..... . ....+.+..+| . +
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~-~~~el~L~Di~~-~k~~g~a~dl~~~~-~-~~~~~~v~~~~---~------~--- 63 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLG-VAREVVLVDLDR-KLAQAHAEDILHAT-P-FAHPVWVWAGS---Y------G--- 63 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSH-HHHHHHHHHHHTTG-G-GSCCCEEEECC---G------G---
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCCh-hHHHHHHHHHHHhH-h-hcCCeEEEECC---H------H---
Confidence 47999998 999999999988765 366888887542 233221 11100 0 11233333322 1 2
Q ss_pred HHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 188 VIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
-++++|+||.+|+...- ...-..+...|+.-.+.+.+...+. ....++.+
T Consensus 64 -a~~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 114 (310)
T 2xxj_A 64 -DLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLV 114 (310)
T ss_dssp -GGTTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred -HhCCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEE
Confidence 25799999999986432 3334567888999999999888875 44554444
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=91.08 E-value=1.3 Score=43.44 Aligned_cols=111 Identities=12% Similarity=0.057 Sum_probs=66.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHH---HcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQ---TYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~---~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|.|+|| |.+|..++..|+..+. +..|+++|.. .+++.. ...... . ....+.+..++ . +
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~-~~el~L~Di~-~~~~~g~~~dl~~~~-~-~~~~~~v~~~~---~------~-- 68 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVV-KDRTKGDALDLEDAQ-A-FTAPKKIYSGE---Y------S-- 68 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSS-HHHHHHHHHHHHGGG-G-GSCCCEEEECC---G------G--
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCC-CCEEEEEeCC-chHHHHHHHHHHHHH-H-hcCCeEEEECC---H------H--
Confidence 368999998 9999999999988653 5688888753 122222 111100 1 11333333322 1 1
Q ss_pred HHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 187 DVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
-++++|+||.+|+...- ...-.++...|+.-.+.+.+...+. ....++.+
T Consensus 69 --a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 119 (318)
T 1ez4_A 69 --DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLV 119 (318)
T ss_dssp --GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred --HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 25799999999986432 2233456778999999999888875 45555444
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=1.9 Score=42.28 Aligned_cols=116 Identities=12% Similarity=0.110 Sum_probs=72.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCC--chhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGK--SYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~--~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|.|+|| |.+|..++..|+..+. +..|.++|... +++...... .........+.+..+| . +
T Consensus 6 ~~KI~IIGa-G~vG~~la~~l~~~~~-~~ei~L~Di~~-~~~~g~~~dl~~~~~~~~~~~~v~~~~---~------~--- 70 (317)
T 3d0o_A 6 GNKVVLIGN-GAVGSSYAFSLVNQSI-VDELVIIDLDT-EKVRGDVMDLKHATPYSPTTVRVKAGE---Y------S--- 70 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCS-CSEEEEECSCH-HHHHHHHHHHHHHGGGSSSCCEEEECC---G------G---
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh-hHhhhhhhhHHhhhhhcCCCeEEEeCC---H------H---
Confidence 468999998 9999999999987653 45788887431 222211100 0001111233322221 1 1
Q ss_pred HHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeec
Q 042694 188 VIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTA 242 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~ 242 (554)
.++++|+||-+|+...- ......+...|+.-.+.+.+...+. ....++.+.|.
T Consensus 71 -a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 124 (317)
T 3d0o_A 71 -DCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATN 124 (317)
T ss_dssp -GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSS
T ss_pred -HhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Confidence 25799999999987432 3344567788999999999888875 55666666553
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=91.00 E-value=0.15 Score=51.18 Aligned_cols=33 Identities=12% Similarity=0.359 Sum_probs=26.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
..+|.|.||||++|+.+++.|++. +++ .+..+.
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~-p~~-elvai~ 48 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANH-PHF-QVTLMT 48 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTC-SSE-EEEEEB
T ss_pred CcEEEEECcCCHHHHHHHHHHHcC-CCc-EEEEEe
Confidence 368999999999999999999874 666 455543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=90.99 E-value=0.24 Score=51.63 Aligned_cols=71 Identities=24% Similarity=0.416 Sum_probs=51.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc--chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN--AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~--~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+.|+|+|.|+ |-+|++|++.|.+.+++ |.+++ ....+++.+.. .+..+.||-+++ +.+
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~---v~vId~d~~~~~~~~~~~----------~~~~i~Gd~~~~------~~L 61 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENND---ITIVDKDGDRLRELQDKY----------DLRVVNGHASHP------DVL 61 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTEE---EEEEESCHHHHHHHHHHS----------SCEEEESCTTCH------HHH
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHhc----------CcEEEEEcCCCH------HHH
Confidence 3578999997 89999999999887765 44554 34444444433 356799999988 766
Q ss_pred HHH-hcCccEEEEc
Q 042694 187 DVI-AKEVDVIVNS 199 (554)
Q Consensus 187 ~~l-~~~vdiViH~ 199 (554)
++. .+++|+++=+
T Consensus 62 ~~Agi~~ad~~ia~ 75 (461)
T 4g65_A 62 HEAGAQDADMLVAV 75 (461)
T ss_dssp HHHTTTTCSEEEEC
T ss_pred HhcCCCcCCEEEEE
Confidence 665 4689998844
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=90.94 E-value=1.6 Score=42.81 Aligned_cols=115 Identities=13% Similarity=-0.029 Sum_probs=67.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCch--hhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSY--QAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~--~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|.|+|| |.+|..++..|+..+. +..++++|... ++++....+.. .......+.+...|. . .
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~-~~el~l~D~~~-~k~~g~a~DL~~~~~~~~~~~~v~~~~~--~----------~ 65 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDV-AKEVVMVDIKD-GMPQGKALDMRESSPIHGFDTRVTGTND--Y----------G 65 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-SSEEEEECSST-THHHHHHHHHHHHHHHHTCCCEEEEESS--S----------G
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCch-HHHHHHHHHHhccccccCCCcEEEECCC--H----------H
Confidence 57999997 9999999999988764 56788887432 11111100000 000111222221121 1 1
Q ss_pred HhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 189 IAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 189 l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
-++++|+||-+|+..+ ..+.-.++...|+.-.+.+.+...+. ....++.+-|
T Consensus 66 a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvt 118 (314)
T 3nep_X 66 PTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVA 118 (314)
T ss_dssp GGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECC
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecC
Confidence 3478999999998753 23345577899999999999998875 4555554444
|
| >2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.75 E-value=0.083 Score=51.41 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=24.9
Q ss_pred cccccCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+|+++|+||+.+|+|+..+++. |+.+
T Consensus 239 nL~~lGlDSi~~m~l~~~~~~~-g~~~ 264 (287)
T 2fq1_A 239 NLIDYGLDSVRMMALAARWRKV-HGDI 264 (287)
T ss_dssp CSGGGTCCTTHHHHHHHHHTTT-CTTC
T ss_pred CHHHhCccHHHHHHHHHHHHHc-CCCC
Confidence 9999999999999999999987 9887
|
| >2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A | Back alignment and structure |
|---|
Probab=90.64 E-value=0.15 Score=41.04 Aligned_cols=28 Identities=7% Similarity=-0.115 Sum_probs=25.9
Q ss_pred ccc-cccCCchhHHHHHHHHHhhhhceee
Q 042694 35 IMH-CQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 35 ~~F-f~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+| -++|-|||.++.|...|+++||+.+
T Consensus 27 ~~l~~dLGlDSL~~veLi~~lE~~fgi~i 55 (101)
T 2kw2_A 27 SHAIDDLGIDSLDFLDIAFAIDKAFGIKL 55 (101)
T ss_dssp CBCCCCCCCCHHHHHHHHHHHHHHTTCCC
T ss_pred cchHHhcCCCHHHHHHHHHHHHHHHCCcc
Confidence 367 4999999999999999999999998
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=90.60 E-value=1 Score=44.47 Aligned_cols=117 Identities=9% Similarity=0.042 Sum_probs=71.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCch--hhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSY--QAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~--~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
...++|.|+|| |.+|..++..|+..+ -+..++++|... ++++....+.. .......-....+|
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~-~~~el~L~Di~~-~~~~g~a~DL~~~~~~~~~~~i~~~~d------------ 81 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKD-LADELALVDVIE-DKLKGEMMDLQHGSLFLKTPKIVSSKD------------ 81 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSCH-HHHHHHHHHHHHTGGGCSCCEEEECSS------------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCC-CCceEEEEeCCh-HHHHHHHHhhhhhhhccCCCeEEEcCC------------
Confidence 45679999997 999999999998865 345788887431 22221110000 00011111112233
Q ss_pred HHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 186 ADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++ -++++|+||-+|+..+- .+.-.++.+.|+.-.+++.+...+. ....++.+-|
T Consensus 82 ~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvt 136 (331)
T 4aj2_A 82 YS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVS 136 (331)
T ss_dssp GG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred HH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 22 25799999999987542 3345578899999999999888875 4555554444
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=1 Score=44.41 Aligned_cols=115 Identities=13% Similarity=0.042 Sum_probs=66.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCch-hhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSY-QAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~-~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++++|.|+|| |.+|..++..|+..+. . .|++++... .+.......... ......++.. ..|.
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~-~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d~----------- 70 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKEL-G-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-ANDY----------- 70 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESSG-----------
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eCCH-----------
Confidence 3568999998 9999999999888665 2 677776421 111111110000 0001123221 2332
Q ss_pred HHHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 186 ADVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
..++++|+||-+|+..+ ....-.++...|+.-.+.+++...+. ....++.+-|
T Consensus 71 --~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvt 124 (324)
T 3gvi_A 71 --AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICIT 124 (324)
T ss_dssp --GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred --HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEecC
Confidence 23579999999998643 23334467788999999999988875 3444444433
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=0.37 Score=47.66 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=45.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.|++|+|+||+|-+|...+..+...|. +|+..+.. ..+.+++ .+. +. ++ |..++++ .+.
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~-~ga-------~~--~~--~~~~~~~---~~~ 208 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGA---HTIAVASTDEKLKIAKE-YGA-------EY--LI--NASKEDI---LRQ 208 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHH-TTC-------SE--EE--ETTTSCH---HHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHH-cCC-------cE--EE--eCCCchH---HHH
Confidence 4678999999999999999887776654 56665542 2222222 211 11 12 3333311 133
Q ss_pred HHHHh--cCccEEEEcCCC
Q 042694 186 ADVIA--KEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~--~~vdiViH~AA~ 202 (554)
...+. .++|+||++++.
T Consensus 209 ~~~~~~~~g~D~vid~~g~ 227 (334)
T 3qwb_A 209 VLKFTNGKGVDASFDSVGK 227 (334)
T ss_dssp HHHHTTTSCEEEEEECCGG
T ss_pred HHHHhCCCCceEEEECCCh
Confidence 44443 269999999885
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=90.42 E-value=0.27 Score=49.06 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=28.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
.+.+|.|.||||++|..|++.|.+ .|.+ +|..+.+
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~-hP~~-el~~l~S 46 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKN-HPEA-KITYLSS 46 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHH-CTTE-EEEEEEC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHc-CCCc-EEEEEeC
Confidence 457899999999999999999987 4776 6776643
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=90.37 E-value=1.9 Score=45.80 Aligned_cols=87 Identities=18% Similarity=0.165 Sum_probs=55.2
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCchh
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSYQ 160 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~~ 160 (554)
+-.++.+|+|.|+.| +|+.+++.|.+.| |++|.++|... .+++++..+
T Consensus 323 ~kL~~~kVLIVGaGG-LGs~va~~La~aG--VG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP---- 395 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGT-LGCYVSRALIAWG--VRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP---- 395 (598)
T ss_dssp HHHHTCEEEEECCSH-HHHHHHHHHHTTT--CCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCT----
T ss_pred HHHhCCeEEEECCCH-HHHHHHHHHHHcC--CCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCC----
Confidence 345678999999855 9999999999865 77898875321 122222221
Q ss_pred hhccCcEEEEEccCCCCCCCC--------CHHHHHHHhcCccEEEEcCCC
Q 042694 161 AFMLSKLVPAVGNVCENNLGL--------EEDLADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 161 ~~~~~kv~~v~GDl~~~~lGL--------s~~~~~~l~~~vdiViH~AA~ 202 (554)
.-+++.+..++..+.-.+ +.+....+.++.|+||.+...
T Consensus 396 ---~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn 442 (598)
T 3vh1_A 396 ---LMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS 442 (598)
T ss_dssp ---TCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSB
T ss_pred ---CcEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCC
Confidence 235666666653332222 234556777899999997543
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=90.33 E-value=0.57 Score=47.03 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=25.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCC-ccEEEEEc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPD-VGKIFIIN 144 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~-V~~i~~~~ 144 (554)
++|.|.||||++|..|++.||...|- ...+..+.
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s 35 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFS 35 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEe
Confidence 47999999999999999966664441 23666554
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=90.32 E-value=0.43 Score=47.90 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=45.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.|++|+|+||+|-+|..+++.+...|. +|+..+.. ..+.+++ .+. +. ++ |..+.++ .+.
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga---~Vi~~~~~~~~~~~~~~-~Ga-------~~--~~--~~~~~~~---~~~ 223 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKC---HVIGTCSSDEKSAFLKS-LGC-------DR--PI--NYKTEPV---GTV 223 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTC---EEEEEESSHHHHHHHHH-TTC-------SE--EE--ETTTSCH---HHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHH-cCC-------cE--EE--ecCChhH---HHH
Confidence 4578999999999999999888776654 56666532 2233332 211 11 12 3333311 122
Q ss_pred HHHHh-cCccEEEEcCCC
Q 042694 186 ADVIA-KEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~-~~vdiViH~AA~ 202 (554)
...+. .++|+||++++.
T Consensus 224 ~~~~~~~g~D~vid~~g~ 241 (362)
T 2c0c_A 224 LKQEYPEGVDVVYESVGG 241 (362)
T ss_dssp HHHHCTTCEEEEEECSCT
T ss_pred HHHhcCCCCCEEEECCCH
Confidence 33332 369999999883
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=90.17 E-value=0.45 Score=47.60 Aligned_cols=32 Identities=13% Similarity=0.379 Sum_probs=26.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII 143 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~ 143 (554)
+.+|.|.||||++|+.+++.|++ .+++ .+..+
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~-~p~~-elvai 35 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAK-HPYL-ELVKV 35 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTT-CSSE-EEEEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHh-CCCc-EEEEE
Confidence 46899999999999999998876 4676 45544
|
| >1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=90.11 E-value=0.051 Score=42.93 Aligned_cols=29 Identities=10% Similarity=-0.101 Sum_probs=13.0
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|.++|.|||.++.|...|+++||+.+
T Consensus 35 d~~l~dlg~DSl~~vel~~~lE~~fgi~i 63 (92)
T 1fh1_A 35 DTELTSLGIDSLGLADVLWDLEQLYGIKI 63 (92)
T ss_dssp -----------CTTTTHHHHHHHC-----
T ss_pred CCCHhhcCCChHHHHHHHHHHHHHhCCcc
Confidence 44899999999999999999999999998
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=90.07 E-value=0.51 Score=46.93 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=26.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhC-CCccEEEEEcc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTV-PDVGKIFIINA 145 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~~ 145 (554)
+.+|.|.||||++|..|++.|.+.. |.+ .+..+.+
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~-el~~~~s 36 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPAS-AVRFFAS 36 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEE-EEEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCce-EEEEEEC
Confidence 4689999999999999999777643 444 6666643
|
| >4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=90.04 E-value=0.18 Score=40.54 Aligned_cols=29 Identities=7% Similarity=-0.027 Sum_probs=27.0
Q ss_pred cccc-cccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMH-CQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~F-f~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+| .++|-|||.++.|...|+++||+.+
T Consensus 49 d~~l~~dLGlDSL~~veLi~~lE~~fgi~i 78 (101)
T 4dxe_H 49 DASFKDDLGADSLDIAELVMELEDEFGTEI 78 (101)
T ss_dssp TCBTTTTSCCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCcchhhcCCCcHHHHHHHHHHHHHHCCCC
Confidence 4488 8999999999999999999999998
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=0.59 Score=46.52 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=47.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
-.+++|+||||+|-+|..+++.+... +. +|+..+. ...+.+++ .+. +. . .|..+.+. .+
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga---~Vi~~~~~~~~~~~~~~-~g~-------~~--~--~~~~~~~~---~~ 230 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGA---TIIGVDVREEAVEAAKR-AGA-------DY--V--INASMQDP---LA 230 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCC---EEEEEESSHHHHHHHHH-HTC-------SE--E--EETTTSCH---HH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCC---eEEEEcCCHHHHHHHHH-hCC-------CE--E--ecCCCccH---HH
Confidence 36789999999989999999888877 64 5666543 22233322 211 11 1 24433310 13
Q ss_pred HHHHHh--cCccEEEEcCCC
Q 042694 185 LADVIA--KEVDVIVNSAAN 202 (554)
Q Consensus 185 ~~~~l~--~~vdiViH~AA~ 202 (554)
....+. .++|+||++++.
T Consensus 231 ~~~~~~~~~~~d~vi~~~g~ 250 (347)
T 1jvb_A 231 EIRRITESKGVDAVIDLNNS 250 (347)
T ss_dssp HHHHHTTTSCEEEEEESCCC
T ss_pred HHHHHhcCCCceEEEECCCC
Confidence 344554 379999999985
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=89.86 E-value=0.55 Score=46.59 Aligned_cols=77 Identities=8% Similarity=0.095 Sum_probs=46.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc--chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN--AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~--~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.|++|+|+||+|-+|...+..+...|. +|+..+ ....+.+++. +. +. ++ |..+.++ .+.
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~l-ga-------~~--~~--~~~~~~~---~~~ 204 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNF---RLIAVTRNNKHTEELLRL-GA-------AY--VI--DTSTAPL---YET 204 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESSSTTHHHHHHH-TC-------SE--EE--ETTTSCH---HHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHhC-CC-------cE--EE--eCCcccH---HHH
Confidence 4688999999999999999887776664 566554 2334444432 21 11 12 3333311 133
Q ss_pred HHHHhc--CccEEEEcCCC
Q 042694 186 ADVIAK--EVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~--~vdiViH~AA~ 202 (554)
...+.. ++|+||++++.
T Consensus 205 ~~~~~~~~g~Dvvid~~g~ 223 (340)
T 3gms_A 205 VMELTNGIGADAAIDSIGG 223 (340)
T ss_dssp HHHHTTTSCEEEEEESSCH
T ss_pred HHHHhCCCCCcEEEECCCC
Confidence 344433 79999999874
|
| >2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=89.47 E-value=0.21 Score=38.80 Aligned_cols=29 Identities=10% Similarity=-0.087 Sum_probs=26.5
Q ss_pred cccc-cccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMH-CQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~F-f~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+| -++|.|||.++.|...|+++||+.+
T Consensus 34 d~~l~~dlglDSl~~vel~~~lE~~fgi~i 63 (88)
T 2l4b_A 34 TTNLAKDFNLDSLDFVDLIMSLEERFSLEI 63 (88)
T ss_dssp TSCTTTTTTCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCchhhccCCcHHHHHHHHHHHHHHHCCCc
Confidence 3478 5899999999999999999999998
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=89.25 E-value=0.58 Score=44.88 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=28.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE 146 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~ 146 (554)
.++++|+|+|+ |-+|+.++..|++.|. +|++.++.
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~---~V~v~~R~ 151 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLDC---AVTITNRT 151 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCC---EEEEEECC
Confidence 46899999998 6699999999999773 67776543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=2.5 Score=41.23 Aligned_cols=114 Identities=9% Similarity=0.022 Sum_probs=64.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhh-hccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQA-FMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~-~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++|.|.|| |.+|..+...|...+. ...|.+++.. ..+.+.......... ....++.. ..| ++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~-g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d------------~~ 65 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG-SND------------YA 65 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE-ESC------------GG
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE-CCC------------HH
Confidence 47999998 9999999999887522 2367777542 222222111110000 01112211 122 12
Q ss_pred HHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 188 VIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
. ++++|+||-+++...- ......+...|+.-.+.+.+...+. .....+.+-|
T Consensus 66 ~-l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~t 118 (310)
T 1guz_A 66 D-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVS 118 (310)
T ss_dssp G-GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECC
T ss_pred H-HCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEEc
Confidence 3 4789999999976432 2334567788888888888888775 3444433333
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=89.16 E-value=0.76 Score=45.52 Aligned_cols=116 Identities=10% Similarity=0.030 Sum_probs=66.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhh-hccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQA-FMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~-~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|.|.|| |.+|..++..|...+. + .|.+++. +..+............ ....++.. . .++
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~-~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t------------~d~ 72 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALREL-A-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E------------YSY 72 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-C-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E------------CSH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-e------------CCH
Confidence 468999998 9999999999988775 2 3666653 2222211111000000 01122221 1 234
Q ss_pred HHHhcCccEEEEcCCCCCc-hh-----hHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeec
Q 042694 187 DVIAKEVDVIVNSAANTTF-DE-----RYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTA 242 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~-~~-----~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~ 242 (554)
++.++++|+||-+++...- .. .-..+...|+.-.+++.+...+. ....++.+.|.
T Consensus 73 ~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~tN 133 (331)
T 1pzg_A 73 EAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTN 133 (331)
T ss_dssp HHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCS
T ss_pred HHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEcC
Confidence 4346899999999865422 11 22344667777788888887775 34556655554
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=1.4 Score=43.58 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=29.4
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
-.++.+|+|.|+ |-+|+.+++.|.+.| |++|.++|.
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aG--Vg~ItlvD~ 66 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWG--VRKITFVDN 66 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcC--CCEEEEecC
Confidence 356789999998 559999999999864 678888753
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=88.99 E-value=1.3 Score=47.23 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=54.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCchhhh
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSYQAF 162 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~~~~ 162 (554)
.++.+|+|.|+ |-+|+.+++.|.+.| |++|.++|... .+++++..+
T Consensus 324 L~~arVLIVGa-GGLGs~vA~~La~aG--VG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP------ 394 (615)
T 4gsl_A 324 IKNTKVLLLGA-GTLGCYVSRALIAWG--VRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP------ 394 (615)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCT------
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCC------
Confidence 56789999998 559999999999864 77898876421 122222221
Q ss_pred ccCcEEEEEccCCCCCCC--------CCHHHHHHHhcCccEEEEcCCC
Q 042694 163 MLSKLVPAVGNVCENNLG--------LEEDLADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 163 ~~~kv~~v~GDl~~~~lG--------Ls~~~~~~l~~~vdiViH~AA~ 202 (554)
.-+++.+..++..+.-- ++.+....+.+++|+|+.|...
T Consensus 395 -~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn 441 (615)
T 4gsl_A 395 -LMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS 441 (615)
T ss_dssp -TCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSS
T ss_pred -CcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCC
Confidence 23556666555322111 1234556677899999998654
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=88.97 E-value=0.85 Score=44.03 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=47.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+|+|| |-+|+.++..|.+.+ +++|++.++.. .+.+.+...... ..-++..+ ++ ++
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G--~~~v~i~~R~~~~a~~la~~~~~~~---~~~~i~~~--~~---------~~ 187 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHG--VQKLQVADLDTSRAQALADVINNAV---GREAVVGV--DA---------RG 187 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTT--CSEEEEECSSHHHHHHHHHHHHHHH---TSCCEEEE--CS---------TT
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhhc---CCceEEEc--CH---------HH
Confidence 56899999998 779999999999865 45677776531 222322221100 01123222 21 33
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
+....+++|+||++...
T Consensus 188 l~~~l~~~DiVInaTp~ 204 (283)
T 3jyo_A 188 IEDVIAAADGVVNATPM 204 (283)
T ss_dssp HHHHHHHSSEEEECSST
T ss_pred HHHHHhcCCEEEECCCC
Confidence 44556689999998754
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=88.57 E-value=0.49 Score=46.02 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=27.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
-.|++|+|+||+|-+|...+..+...|. +|+..+
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga---~Vi~~~ 157 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAMGL---RVLAAA 157 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEe
Confidence 3688999999999999999887776553 566554
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=88.37 E-value=1.5 Score=42.73 Aligned_cols=112 Identities=10% Similarity=0.066 Sum_probs=61.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHH---HcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQ---TYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~---~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++|.|+|| |.+|..++..|...+. +..|++++... +++.. ......+ ....+.+..+| ++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~-~~eV~L~D~~~-~~~~~~~~~l~~~~~--~~~~~~i~~~~------------~~ 63 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGS-CSELVLVDRDE-DRAQAEAEDIAHAAP--VSHGTRVWHGG------------HS 63 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH-HHHHHHHHHHTTSCC--TTSCCEEEEEC------------GG
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCH-HHHHHHHHhhhhhhh--hcCCeEEEECC------------HH
Confidence 47999998 9999999999988764 45788877532 22221 1111000 01111111122 11
Q ss_pred HHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 188 VIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
.++++|+||-+++... ....-.++...|+.-.+.+++...+. ....++.+.|
T Consensus 64 -a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~t 116 (304)
T 2v6b_A 64 -ELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTS 116 (304)
T ss_dssp -GGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECS
T ss_pred -HhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 2578999999986532 22333456678888888888888775 3444444433
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=88.29 E-value=2.9 Score=41.16 Aligned_cols=115 Identities=10% Similarity=-0.004 Sum_probs=70.5
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCch--hhh-ccCcEEEEEccCCCCCCCCCHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSY--QAF-MLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~--~~~-~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..++|.|+|| |.+|..++..|+..+. +..+.++|... ++++....+.. ... ...++ ...+|..+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~-~~ev~L~Di~~-~~~~g~a~DL~~~~~~~~~~~i-~~t~d~~~--------- 86 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDL-ADEVALVDVME-DKLKGEMMDLEHGSLFLHTAKI-VSGKDYSV--------- 86 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCC-CSEEEEECSCH-HHHHHHHHHHHHHGGGSCCSEE-EEESSSCS---------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEECCH-HHHHHHHHHhhhhhhcccCCeE-EEcCCHHH---------
Confidence 4578999998 9999999999988763 45788877421 11111100000 000 12233 22345432
Q ss_pred HHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 186 ADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++++|+||-+|+..+- .+.-.++...|+.-.+.+.+...+. ....++.+=|
T Consensus 87 ----~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvt 138 (330)
T 3ldh_A 87 ----SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHP 138 (330)
T ss_dssp ----CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred ----hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCC
Confidence 4799999999987542 2334467788888888998888875 4555544444
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=2.5 Score=41.36 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=66.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchh--hhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQ--AFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~--~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|.|+|| |.+|..++..|+..+. +..|+++|... ++++........ ......+.+..+| +
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~-~~ev~l~Di~~-~~~~~~~~dl~~~~~~~~~~~~i~~~~------------~- 69 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGI-ADEIVLIDANE-SKAIGDAMDFNHGKVFAPKPVDIWHGD------------Y- 69 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH-HHHHHHHHHHHHHTTSSSSCCEEEECC------------G-
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEeCCc-chHHHHHhhHHHHhhhcCCCeEEEcCc------------H-
Confidence 468999998 9999999998887653 56888887542 122211100000 0011123323222 1
Q ss_pred HHhcCccEEEEcCCCCCch-hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 188 VIAKEVDVIVNSAANTTFD-ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
..++++|+||-+++...-. ..-.++...|..-.+.+.+...+. ....++.+-|
T Consensus 70 ~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv~t 123 (316)
T 1ldn_A 70 DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVAT 123 (316)
T ss_dssp GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECS
T ss_pred HHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEEeC
Confidence 1257899999998764321 112344567777778888877764 3444444433
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.71 E-value=1.3 Score=44.50 Aligned_cols=74 Identities=12% Similarity=0.224 Sum_probs=44.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
-.|++|+|+||+|-+|...+..+...|. +|+...++ ..+.++ ..+. +. ++ |..++ +..
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga---~Vi~~~~~~~~~~~~-~lGa-------~~--v~--~~~~~------~~~ 240 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDA---HVTAVCSQDASELVR-KLGA-------DD--VI--DYKSG------SVE 240 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECGGGHHHHH-HTTC-------SE--EE--ETTSS------CHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeChHHHHHHH-HcCC-------CE--EE--ECCch------HHH
Confidence 4578999999999999998877766553 55554432 233332 2221 11 12 33333 222
Q ss_pred HHHh--cCccEEEEcCCC
Q 042694 187 DVIA--KEVDVIVNSAAN 202 (554)
Q Consensus 187 ~~l~--~~vdiViH~AA~ 202 (554)
+.+. .++|+||++++.
T Consensus 241 ~~~~~~~g~D~vid~~g~ 258 (375)
T 2vn8_A 241 EQLKSLKPFDFILDNVGG 258 (375)
T ss_dssp HHHHTSCCBSEEEESSCT
T ss_pred HHHhhcCCCCEEEECCCC
Confidence 2333 479999999884
|
| >2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=87.52 E-value=0.34 Score=39.24 Aligned_cols=29 Identities=17% Similarity=0.003 Sum_probs=26.7
Q ss_pred ccccc-ccCC-chhHHHHHHHHHhhhhceee
Q 042694 34 SIMHC-QGGG-KTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff-~~GG-~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|+ ++|. |||.++.|...|.++||+.+
T Consensus 49 d~~L~~dLGl~DSL~~veLi~~lE~~FgI~I 79 (105)
T 2lki_A 49 SSVLLGNIPELDSMAVVNVITALEEYFDFSV 79 (105)
T ss_dssp TSBCBTTBTTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCchhhhcCcccHHHHHHHHHHHHHHhCCCc
Confidence 34889 5999 99999999999999999998
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=87.09 E-value=2.9 Score=42.84 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=51.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCchhhh
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSYQAF 162 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~~~~ 162 (554)
.+..+|+|.|+.| +|+.+++.|.+.| |++|.++|... .+++++..+
T Consensus 38 L~~~~VlvvG~GG-lGs~va~~La~aG--vg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp------ 108 (434)
T 1tt5_B 38 LDTCKVLVIGAGG-LGCELLKNLALSG--FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP------ 108 (434)
T ss_dssp HHTCCEEEECSST-HHHHHHHHHHHTT--CCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHST------
T ss_pred hcCCEEEEECcCH-HHHHHHHHHHHcC--CCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCC------
Confidence 4678999999855 9999999999875 56787764211 122222221
Q ss_pred ccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCC
Q 042694 163 MLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAA 201 (554)
Q Consensus 163 ~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA 201 (554)
.-+++.+..++... . ..+.++.|+|+.+..
T Consensus 109 -~v~v~~~~~~i~~~------~--~~~~~~~DlVi~~~D 138 (434)
T 1tt5_B 109 -NCNVVPHFNKIQDF------N--DTFYRQFHIIVCGLD 138 (434)
T ss_dssp -TCCCEEEESCGGGB------C--HHHHTTCSEEEECCS
T ss_pred -CCEEEEEecccchh------h--HHHhcCCCEEEECCC
Confidence 23577777777653 1 356689999999854
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=86.76 E-value=1.5 Score=43.62 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=45.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEc--chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN--AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~--~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+||+|-+|...+..+...|. +|+..+ ....+.+++ .+. +. ++ |..+.++ .+...
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga---~Vi~~~~~~~~~~~~~~-~Ga-------~~--~~--~~~~~~~---~~~v~ 226 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGF---RPIVTVRRDEQIALLKD-IGA-------AH--VL--NEKAPDF---EATLR 226 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESCGGGHHHHHH-HTC-------SE--EE--ETTSTTH---HHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHH-cCC-------CE--EE--ECCcHHH---HHHHH
Confidence 37999999999999999887777664 566554 233444443 221 11 12 3333311 13333
Q ss_pred HHh--cCccEEEEcCCC
Q 042694 188 VIA--KEVDVIVNSAAN 202 (554)
Q Consensus 188 ~l~--~~vdiViH~AA~ 202 (554)
.+. .++|+||++++.
T Consensus 227 ~~~~~~g~D~vid~~g~ 243 (349)
T 3pi7_A 227 EVMKAEQPRIFLDAVTG 243 (349)
T ss_dssp HHHHHHCCCEEEESSCH
T ss_pred HHhcCCCCcEEEECCCC
Confidence 443 379999999874
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=86.70 E-value=1.6 Score=42.65 Aligned_cols=114 Identities=10% Similarity=0.078 Sum_probs=62.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|.|.| +|.+|..++..|.+.+. ...|++++.. ..+.+....... .......+.....|. .
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~-~~~V~l~d~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~d~-------------~ 65 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGV-ADDYVFIDANEAKVKADQIDFQDA-MANLEAHGNIVINDW-------------A 65 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHHH-GGGSSSCCEEEESCG-------------G
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-CCEEEEEcCCHHHHHHHHHHHHhh-hhhcCCCeEEEeCCH-------------H
Confidence 5899999 69999999999998873 3467777643 222232211100 000111222222332 1
Q ss_pred HhcCccEEEEcCCCCC-----chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 189 IAKEVDVIVNSAANTT-----FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 189 l~~~vdiViH~AA~v~-----~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
.++++|+||-++.... ....-..+...|+.-.+.+++...+. .....+.+.|
T Consensus 66 ~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~~~~~ii~~t 122 (309)
T 1hyh_A 66 ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVIS 122 (309)
T ss_dssp GGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred HhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEc
Confidence 2478999999887532 11112234556777777787777664 2344444333
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=86.66 E-value=0.13 Score=64.65 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred ceeeeeccc-------cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 25 DLCLLRRKR-------SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 25 ~~~~~~~~~-------~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.|+.++..+ +.+||++|||||+|++|.++|++.+++.+
T Consensus 2131 ~~a~vL~~~~~~~i~~~~~~~~lG~DSL~avelr~~i~~~~~~~l 2175 (2512)
T 2vz8_A 2131 AVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVL 2175 (2512)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHhCCCcccccCCCCchHHhCcchHHHHHHHHHHHHHhCCcc
Confidence 688666532 23899999999999999999999999887
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=86.55 E-value=0.93 Score=44.12 Aligned_cols=75 Identities=24% Similarity=0.220 Sum_probs=47.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+|+|+ |-+|+.++..|++.+. ++|++.++.. .+.+.+..+.. ...+ + +.++
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~--~~V~v~nR~~~ka~~la~~~~~~-----~~~~--~-----------~~~~ 197 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAA--ERIDMANRTVEKAERLVREGDER-----RSAY--F-----------SLAE 197 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTC--SEEEEECSSHHHHHHHHHHSCSS-----SCCE--E-----------CHHH
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHhhhc-----cCce--e-----------eHHH
Confidence 46899999997 6699999999998653 4677776532 22333322110 0011 1 1134
Q ss_pred HHHHhcCccEEEEcCCCC
Q 042694 186 ADVIAKEVDVIVNSAANT 203 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v 203 (554)
.....+++|+||++.+..
T Consensus 198 ~~~~~~~aDivIn~t~~~ 215 (297)
T 2egg_A 198 AETRLAEYDIIINTTSVG 215 (297)
T ss_dssp HHHTGGGCSEEEECSCTT
T ss_pred HHhhhccCCEEEECCCCC
Confidence 555667899999998764
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=86.48 E-value=0.82 Score=46.18 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=47.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
..+++|+|+|+ |-+|..+++.+...|. +|+..+... .+.+++..+. .+.. +... .++
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga---~V~~~d~~~~~l~~~~~~~g~--------~~~~---~~~~------~~~ 224 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGA---TVTVLDINIDKLRQLDAEFCG--------RIHT---RYSS------AYE 224 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTT--------SSEE---EECC------HHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCHHHHHHHHHhcCC--------eeEe---ccCC------HHH
Confidence 56899999998 9999999999987664 566666432 2223322221 1111 1122 256
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
+.++..++|+||.+++.
T Consensus 225 l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 225 LEGAVKRADLVIGAVLV 241 (377)
T ss_dssp HHHHHHHCSEEEECCCC
T ss_pred HHHHHcCCCEEEECCCc
Confidence 66777889999998764
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=86.29 E-value=1.4 Score=41.59 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDV 137 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V 137 (554)
++|.|.|+||-+|+.+++.+.+. ++.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-~~~ 26 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-DDL 26 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-TTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCC
Confidence 37999999999999999998753 444
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=86.02 E-value=1 Score=45.19 Aligned_cols=74 Identities=12% Similarity=0.238 Sum_probs=46.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+|+|+ |-+|+.++..+...|. +|+..+.. ..+.+++... ..+..+. . +.++
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga---~V~v~dr~~~r~~~~~~~~~--------~~~~~~~---~------~~~~ 223 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGA---QVQIFDINVERLSYLETLFG--------SRVELLY---S------NSAE 223 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHG--------GGSEEEE---C------CHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCHHHHHHHHHhhC--------ceeEeee---C------CHHH
Confidence 45689999999 9999999999988764 56666543 2222332211 1221111 1 1245
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
+.....++|+||++++.
T Consensus 224 ~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 224 IETAVAEADLLIGAVLV 240 (361)
T ss_dssp HHHHHHTCSEEEECCCC
T ss_pred HHHHHcCCCEEEECCCc
Confidence 55566799999999875
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=85.91 E-value=3.2 Score=40.61 Aligned_cols=111 Identities=13% Similarity=0.016 Sum_probs=64.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|.|.|| |.+|..++..|+..+. +..|++++... .+.+......... ......+...| . +
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~-~~~V~l~D~~~~~~~~~~~~l~~~~~--~~~~~~i~~~d---~------~---- 63 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDKKRAEGDALDLIHGTP--FTRRANIYAGD---Y------A---- 63 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHHHGG--GSCCCEEEECC---G------G----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEeCChHHHHHHHHHHHhhhh--hcCCcEEEeCC---H------H----
Confidence 47999998 9999999999998876 44677776431 2222211110000 01111111112 1 1
Q ss_pred HhcCccEEEEcCCCCCch-hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 189 IAKEVDVIVNSAANTTFD-ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
.++++|+||-+++..... ..-..+...|+.-.+.+++...+. .....+.+
T Consensus 64 ~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~ 114 (319)
T 1a5z_A 64 DLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIV 114 (319)
T ss_dssp GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEE
Confidence 247899999998864421 123356777888888888887764 33444433
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=85.90 E-value=1.1 Score=43.83 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=46.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++++|+|| |-.|+.++..|.+.+ +++|++.++. ..++.++.... ........+..+ ++.+. +.
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G--~~~v~v~nRt~~~~~~a~~la~~-~~~~~~~~v~~~--~~~~l------~~ 213 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEG--IKEIKLFNRKDDFFEKAVAFAKR-VNENTDCVVTVT--DLADQ------HA 213 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEECSSTHHHHHHHHHHH-HHHHSSCEEEEE--ETTCH------HH
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcC--CCEEEEEECCCchHHHHHHHHHH-hhhccCcceEEe--chHhh------hh
Confidence 46899999997 778999999999865 4567766543 12333221110 001011122222 33221 22
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
......++|+||++...
T Consensus 214 ~~~~l~~~DiIINaTp~ 230 (312)
T 3t4e_A 214 FTEALASADILTNGTKV 230 (312)
T ss_dssp HHHHHHHCSEEEECSST
T ss_pred hHhhccCceEEEECCcC
Confidence 34445679999998654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=85.71 E-value=1.3 Score=43.89 Aligned_cols=75 Identities=16% Similarity=0.306 Sum_probs=44.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
-.|++|||+||+|-+|...+..+...|. +|+...++ ..+.+++ .+. ..+ | .+.++ .+..
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga---~Vi~~~~~~~~~~~~~-lGa----------~~i--~-~~~~~---~~~~ 208 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARGA---RVFATARGSDLEYVRD-LGA----------TPI--D-ASREP---EDYA 208 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECHHHHHHHHH-HTS----------EEE--E-TTSCH---HHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCHHHHHHHHH-cCC----------CEe--c-cCCCH---HHHH
Confidence 3578999999999999999888776664 45555332 2222322 211 112 3 22211 2333
Q ss_pred HHHhc--CccEEEEcCCC
Q 042694 187 DVIAK--EVDVIVNSAAN 202 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~ 202 (554)
..+.. ++|+||++++.
T Consensus 209 ~~~~~~~g~D~vid~~g~ 226 (343)
T 3gaz_A 209 AEHTAGQGFDLVYDTLGG 226 (343)
T ss_dssp HHHHTTSCEEEEEESSCT
T ss_pred HHHhcCCCceEEEECCCc
Confidence 44433 79999999884
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=85.65 E-value=0.55 Score=46.64 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=27.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhC-CCccEEEEEc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTV-PDVGKIFIIN 144 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~ 144 (554)
+++|.|.||||++|+.+++.|+++. +.+ .++.+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~-elv~i~ 37 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVD-ELFLLA 37 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEE-EEEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCE-EEEEEE
Confidence 4689999999999999999998754 556 555554
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=85.61 E-value=1.8 Score=43.19 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=44.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-----hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-----LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-----~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
|++|+|+|| |-+|..++..+...|. +|+..+.. ..+.+++ .+ ...+ | .+ .+.+.
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga---~Vi~~~~~~~~~~~~~~~~~-~g----------a~~v--~-~~---~~~~~ 239 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYGL---EVWMANRREPTEVEQTVIEE-TK----------TNYY--N-SS---NGYDK 239 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHTC---EEEEEESSCCCHHHHHHHHH-HT----------CEEE--E-CT---TCSHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCccchHHHHHHHH-hC----------Ccee--c-hH---HHHHH
Confidence 899999999 9999999988877664 56666532 2222322 21 1223 4 33 22333
Q ss_pred HHHHHhcCccEEEEcCCC
Q 042694 185 LADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~ 202 (554)
..+ ...++|+||++++.
T Consensus 240 ~~~-~~~~~d~vid~~g~ 256 (366)
T 2cdc_A 240 LKD-SVGKFDVIIDATGA 256 (366)
T ss_dssp HHH-HHCCEEEEEECCCC
T ss_pred HHH-hCCCCCEEEECCCC
Confidence 333 22579999999986
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=85.44 E-value=1.3 Score=43.47 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=45.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
-.|.+|+|+||+|-+|...+.-+...|. +|+...++ ..+.+++ .+. +. ++ |..+. +.+
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga---~vi~~~~~~~~~~~~~-lGa-------~~--~i--~~~~~------~~~ 209 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGT---TVITTASKRNHAFLKA-LGA-------EQ--CI--NYHEE------DFL 209 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEECHHHHHHHHH-HTC-------SE--EE--ETTTS------CHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCC---EEEEEeccchHHHHHH-cCC-------CE--EE--eCCCc------chh
Confidence 4688999999999999998887776654 45554432 2222322 221 11 12 33333 213
Q ss_pred HHHhcCccEEEEcCCC
Q 042694 187 DVIAKEVDVIVNSAAN 202 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~ 202 (554)
....+++|+||.+.+.
T Consensus 210 ~~~~~g~D~v~d~~g~ 225 (321)
T 3tqh_A 210 LAISTPVDAVIDLVGG 225 (321)
T ss_dssp HHCCSCEEEEEESSCH
T ss_pred hhhccCCCEEEECCCc
Confidence 4444789999999873
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=85.44 E-value=1.1 Score=46.18 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=59.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCc--cEEEEEcchh-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDV--GKIFIINAEL-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V--~~i~~~~~~~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++|+|.| .|-+|+.++++|.++. ++ ..|.+.+... -..+.+. . ++.+...+++..+. ++...
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~~-dv~~~~I~vaD~~~~~~~~~~~--------~--g~~~~~~~Vdadnv---~~~l~ 78 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEKF-DIKPSQVTIIAAEGTKVDVAQQ--------Y--GVSFKLQQITPQNY---LEVIG 78 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHB-CCCGGGEEEEESSCCSCCHHHH--------H--TCEEEECCCCTTTH---HHHTG
T ss_pred CCEEEEC-cCHHHHHHHHHHHhCC-CCceeEEEEeccchhhhhHHhh--------c--CCceeEEeccchhH---HHHHH
Confidence 5799999 6889999999999863 33 3666665321 0111111 1 23445556554411 12344
Q ss_pred HHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeece
Q 042694 188 VIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAY 243 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~ 243 (554)
.++++.|+|+|++-. . ....++++|.+. + .+|++|+-
T Consensus 79 aLl~~~DvVIN~s~~-~--------------~~l~Im~aclea-G---v~YlDTa~ 115 (480)
T 2ph5_A 79 STLEENDFLIDVSIG-I--------------SSLALIILCNQK-G---ALYINAAT 115 (480)
T ss_dssp GGCCTTCEEEECCSS-S--------------CHHHHHHHHHHH-T---CEEEESSC
T ss_pred HHhcCCCEEEECCcc-c--------------cCHHHHHHHHHc-C---CCEEECCC
Confidence 455666999996532 1 234689999985 3 58899874
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=85.11 E-value=0.78 Score=45.40 Aligned_cols=69 Identities=7% Similarity=0.030 Sum_probs=49.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.++|+|.|+ |-+|+.++++|.+.+. +.+++.. ..+ +++ ..+.++.||.+++ +.++
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~----v~vid~~~~~~~-~~~-----------~~~~~i~gd~~~~------~~L~ 171 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV----FVLAEDENVRKK-VLR-----------SGANFVHGDPTRV------SDLE 171 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE----EEEESCGGGHHH-HHH-----------TTCEEEESCTTSH------HHHH
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc----EEEEeCChhhhh-HHh-----------CCcEEEEeCCCCH------HHHH
Confidence 457999996 9999999999988653 4444432 222 221 3567899999987 7777
Q ss_pred HH-hcCccEEEEcCC
Q 042694 188 VI-AKEVDVIVNSAA 201 (554)
Q Consensus 188 ~l-~~~vdiViH~AA 201 (554)
.. .+++|.|+-+..
T Consensus 172 ~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 172 KANVRGARAVIVDLE 186 (336)
T ss_dssp HTCSTTEEEEEECCS
T ss_pred hcChhhccEEEEcCC
Confidence 66 678999997654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=85.10 E-value=1.7 Score=42.95 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=45.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.+++|+|+|| |-+|..+++.+...|. +|+.++.. ..+.+++ .+. +. + .|..+.++ .+.
T Consensus 163 ~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~-lGa-------~~--~--~d~~~~~~---~~~ 223 (339)
T 1rjw_A 163 KPGEWVAIYGI-GGLGHVAVQYAKAMGL---NVVAVDIGDEKLELAKE-LGA-------DL--V--VNPLKEDA---AKF 223 (339)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHTTC---EEEEECSCHHHHHHHHH-TTC-------SE--E--ECTTTSCH---HHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHH-CCC-------CE--E--ecCCCccH---HHH
Confidence 45789999999 6699999887776553 67766532 2223322 221 11 1 24443311 123
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
...+..++|+||++++.
T Consensus 224 ~~~~~~~~d~vid~~g~ 240 (339)
T 1rjw_A 224 MKEKVGGVHAAVVTAVS 240 (339)
T ss_dssp HHHHHSSEEEEEESSCC
T ss_pred HHHHhCCCCEEEECCCC
Confidence 33333689999999874
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=84.83 E-value=1.5 Score=43.87 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=46.1
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.|.+|+|+|+ |-+|...+..+...|. +|+..+. ...+.+++..+. +. ++ |..+. +..
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga---~Vi~~~~~~~~~~~~~~~lGa-------~~--v~--~~~~~------~~~ 245 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGS---KVTVISTSPSKKEEALKNFGA-------DS--FL--VSRDQ------EQM 245 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCGGGHHHHHHTSCC-------SE--EE--ETTCH------HHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhcCC-------ce--EE--eccCH------HHH
Confidence 6889999996 8899999887776553 5665542 223333323321 11 12 33332 455
Q ss_pred HHHhcCccEEEEcCCCC
Q 042694 187 DVIAKEVDVIVNSAANT 203 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v 203 (554)
..+..++|+||++++..
T Consensus 246 ~~~~~~~D~vid~~g~~ 262 (366)
T 1yqd_A 246 QAAAGTLDGIIDTVSAV 262 (366)
T ss_dssp HHTTTCEEEEEECCSSC
T ss_pred HHhhCCCCEEEECCCcH
Confidence 66667899999998853
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=84.78 E-value=1.1 Score=47.27 Aligned_cols=34 Identities=32% Similarity=0.307 Sum_probs=24.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
.++++++|||| |-+|+.++..|++.|. +|++.++
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~---~V~i~~R 395 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGA---KVVIANR 395 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC----CEEEES
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEEC
Confidence 46789999999 6799999999999885 4555543
|
| >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 | Back alignment and structure |
|---|
Probab=84.60 E-value=4.4 Score=45.24 Aligned_cols=107 Identities=15% Similarity=0.220 Sum_probs=67.1
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCchhhhc
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSYQAFM 163 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~~~~~ 163 (554)
+..+|+|.|+.| +|+.+++.|.+.| |++|.++|... .+++++..+
T Consensus 410 ~~~~vlvvG~Gg-lG~~~~~~L~~~G--vg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~np------- 479 (805)
T 2nvu_B 410 DTCKVLVIGAGG-LGCELLKNLALSG--FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP------- 479 (805)
T ss_dssp HTCCEEEECCSS-HHHHHHHHHHTTT--CCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHST-------
T ss_pred hCCeEEEECCCH-HHHHHHHHHHHcC--CCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHCC-------
Confidence 678999999866 8999999999865 67888775321 122222221
Q ss_pred cCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHc----------CCC
Q 042694 164 LSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC----------NKL 233 (554)
Q Consensus 164 ~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~----------~~~ 233 (554)
.-+|+.+..++... . ..+.+++|+||.|.-. +. .-..+-++|... ...
T Consensus 480 ~~~v~~~~~~~~~~------~--~~~~~~~d~vv~~~d~--~~------------~r~~in~~~~~~~~~~~g~~~~~~~ 537 (805)
T 2nvu_B 480 NCNVVPHFNKIQDF------N--DTFYRQFHIIVCGLDS--II------------ARRWINGMLISLLNYEDGVLDPSSI 537 (805)
T ss_dssp TCEEEEEESCGGGS------C--HHHHHTCSEEEECCSC--HH------------HHHHHHHHHHHTCCEETTEECGGGC
T ss_pred CCEEEEEecccccc------H--HHHHhcCCEEEECCCC--HH------------HHHHHHHHHHHHhhccccccccccC
Confidence 23677788887654 2 2456789999998532 21 111233444432 124
Q ss_pred ceEEEEeeceeccc
Q 042694 234 KLFVQVSTAYVNGQ 247 (554)
Q Consensus 234 k~~v~vST~~v~~~ 247 (554)
+++|+.++....|.
T Consensus 538 ~p~i~~~~~g~~G~ 551 (805)
T 2nvu_B 538 VPLIDGGTEGFKGN 551 (805)
T ss_dssp CCEEEEEEETTEEE
T ss_pred CcEEEeccccCcee
Confidence 68999888766554
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=84.13 E-value=0.78 Score=45.47 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=25.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII 143 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~ 143 (554)
+++|+|.||||++|+.|++.|.+ .|++ .+..+
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~-~p~~-el~~l 35 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNR-HPHM-NITAL 35 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHH-CTTE-EEEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHh-CCCC-cEEEE
Confidence 57899999999999999998876 4776 44443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=83.99 E-value=1.7 Score=43.04 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=44.5
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.|.+|+|+|| |-+|...+..+...+. ++|+..+.. ..+.+++ .+. +.+ + |..++++ .+..
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga--~~Vi~~~~~~~~~~~~~~-~Ga-------~~~--~--~~~~~~~---~~~v 228 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGA--YPVIVSEPSDFRRELAKK-VGA-------DYV--I--NPFEEDV---VKEV 228 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTC--CSEEEECSCHHHHHHHHH-HTC-------SEE--E--CTTTSCH---HHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHH-hCC-------CEE--E--CCCCcCH---HHHH
Confidence 6889999999 9999999887776664 245655432 2233332 211 111 1 3333311 1333
Q ss_pred HHHhc--CccEEEEcCCC
Q 042694 187 DVIAK--EVDVIVNSAAN 202 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~ 202 (554)
..+.. ++|+||++++.
T Consensus 229 ~~~~~g~g~D~vid~~g~ 246 (348)
T 2d8a_A 229 MDITDGNGVDVFLEFSGA 246 (348)
T ss_dssp HHHTTTSCEEEEEECSCC
T ss_pred HHHcCCCCCCEEEECCCC
Confidence 34432 69999999874
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=83.91 E-value=5.5 Score=38.66 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=64.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH--HHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF--KCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~--~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.+++|.|+|| |.+|..+...|+..+. +..|+++|...- ....+.. .....++.. .+|.
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~-~~ev~L~Di~~~~~g~a~dl~-----~~~~~~i~~-t~d~------------ 72 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGI-ADRLVLLDLSEGTKGATMDLE-----IFNLPNVEI-SKDL------------ 72 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECCC-----CHHHHH-----HHTCTTEEE-ESCG------------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEcCCcchHHHHHHHh-----hhcCCCeEE-eCCH------------
Confidence 3578999996 9999999999998875 557887764321 0000000 011124443 2443
Q ss_pred HHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEE
Q 042694 187 DVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFV 237 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v 237 (554)
.-++++|+||-+|+.-...+.-..+...|+.-.+++.+...+. ....++
T Consensus 73 -~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~-~p~a~i 121 (303)
T 2i6t_A 73 -SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHY-SQHSVL 121 (303)
T ss_dssp -GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHH-TTTCEE
T ss_pred -HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEE
Confidence 1257999999998763322233466777888888888888774 244443
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=83.60 E-value=1.1 Score=47.44 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=66.2
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhH--HHHHHHcC-------Cc--------hhhh-ccCc
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELF--KCLKQTYG-------KS--------YQAF-MLSK 166 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~--~~l~~~~~-------~~--------~~~~-~~~k 166 (554)
++-.+..+|+|.|+.| +|..+++.|.+.| |++|.++|.... ..+.+..- .. ..+. ..-+
T Consensus 27 q~~L~~~~VlvvG~GG-lGseiak~La~aG--Vg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~ 103 (531)
T 1tt5_A 27 QEALESAHVCLINATA-TGTEILKNLVLPG--IGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVS 103 (531)
T ss_dssp HHHHHHCEEEEECCSH-HHHHHHHHHHTTT--CSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSB
T ss_pred HHHHhcCeEEEECcCH-HHHHHHHHHHHcC--CCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCe
Confidence 3345678999999855 9999999999865 778988864321 11211110 00 0000 0123
Q ss_pred EEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecc
Q 042694 167 LVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 167 v~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~ 246 (554)
+.++..++... .+....+.++.|+||.+... + . .-..+.++|... -++||+.++.+..|
T Consensus 104 v~~~~~~~~~~-----~~~~~~~~~~~DvVi~~~d~--~----~--------~r~~ln~~c~~~--~iplI~~~~~G~~G 162 (531)
T 1tt5_A 104 GSFVEESPENL-----LDNDPSFFCRFTVVVATQLP--E----S--------TSLRLADVLWNS--QIPLLICRTYGLVG 162 (531)
T ss_dssp CCEESSCHHHH-----HHSCGGGGGGCSEEEEESCC--H----H--------HHHHHHHHHHHT--TCCEEEEEEETTEE
T ss_pred EEEeCCCcchh-----hhhhHHHhcCCCEEEEeCCC--H----H--------HHHHHHHHHHHc--CCCEEEEEecCCeE
Confidence 44444443210 01112355789999987432 2 1 122355677763 46899998877666
Q ss_pred c
Q 042694 247 Q 247 (554)
Q Consensus 247 ~ 247 (554)
.
T Consensus 163 ~ 163 (531)
T 1tt5_A 163 Y 163 (531)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=83.36 E-value=0.74 Score=46.10 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=25.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
..+|.|.||||+.|..|++.|.+ .|.+ .+..+.
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~-hP~~-el~~l~ 39 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSN-HPYI-KPAYLA 39 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTT-CSSE-EEEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHh-CCCc-eEEEEE
Confidence 46899999999999999996655 6766 555553
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=83.36 E-value=0.74 Score=46.10 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=25.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
..+|.|.||||+.|..|++.|.+ .|.+ .+..+.
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~-hP~~-el~~l~ 39 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSN-HPYI-KPAYLA 39 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTT-CSSE-EEEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHh-CCCc-eEEEEE
Confidence 46899999999999999996655 6766 555553
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=83.23 E-value=1.3 Score=45.73 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=28.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQ 153 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~ 153 (554)
++|.|.| +|++|..+...|.+.|++ |++++. ...+.+.+
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~~---V~~~D~~~~~v~~l~~ 43 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGAN---VRCIDTDRNKIEQLNS 43 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCE---EEEECSCHHHHHHHHH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCCE---EEEEECCHHHHHHHHc
Confidence 5899998 599999999999998874 455543 33455544
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=4.8 Score=39.45 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=61.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhh-hccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQA-FMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~-~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|.|.|| |.+|..+...|...+. + .|.++|.. ..+............ ....++.. ..|.
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~-~-~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d~------------ 67 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNL-G-DVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-SNTY------------ 67 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-ECCG------------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE-CCCH------------
Confidence 368999998 9999999888887654 3 37777632 122111111110000 01123321 1332
Q ss_pred HHHhcCccEEEEcCCCCC-chhh-----HHHHHHHhchHHHHHHHHHHHcCCCceEEE
Q 042694 187 DVIAKEVDVIVNSAANTT-FDER-----YDIAIDINTRGPCRLMEFAKQCNKLKLFVQ 238 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~-~~~~-----~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~ 238 (554)
..++++|+||-+++... .... -..+...|+.-.+.+.+...+. ....++.
T Consensus 68 -~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~ii 123 (322)
T 1t2d_A 68 -DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFII 123 (322)
T ss_dssp -GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEE
T ss_pred -HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEE
Confidence 22579999999987532 1111 2244666777777787777664 2444443
|
| >2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=82.28 E-value=0.81 Score=37.50 Aligned_cols=31 Identities=6% Similarity=-0.026 Sum_probs=27.4
Q ss_pred cccccc-cccCCchhHHHHHHHHHhhhhceee
Q 042694 32 KRSIMH-CQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 32 ~~~~~F-f~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
..+.+| -++|-|||.++.|...|.++||+.+
T Consensus 46 ~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I 77 (113)
T 2cgq_A 46 TANQVLVDDLGFDSLKLFQLITELEDEFDIAI 77 (113)
T ss_dssp CTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCchhhhcCCCHHHHHHHHHHHHHHhCCCc
Confidence 344578 4899999999999999999999998
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=82.01 E-value=4.3 Score=39.67 Aligned_cols=104 Identities=13% Similarity=0.038 Sum_probs=56.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCch-hhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSY-QAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~-~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.++|.|.|| |.+|..++..|++.+. ..|++++.. ..+.......... ......++.. ..|+
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~--~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~------------ 67 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNL--ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TDDY------------ 67 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESCG------------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--ceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CCCH------------
Confidence 468999998 9999999999998775 146666532 2222110000000 0001123321 1222
Q ss_pred HHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHc
Q 042694 187 DVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQC 230 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~ 230 (554)
..++++|+||-+++.-.- .....++...|..-.+.+++...+.
T Consensus 68 -~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~ 111 (317)
T 2ewd_A 68 -ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY 111 (317)
T ss_dssp -GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred -HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHH
Confidence 234789999999865321 1112233455666677777776654
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=81.97 E-value=1.4 Score=45.32 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=25.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
|+|.|.| +|++|..+...|.+.|+ +|++++.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~---~V~~~d~ 31 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGH---EVIGVDV 31 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC---EEEEECS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC---EEEEEEC
Confidence 4788998 69999999999999876 4555553
|
| >3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma} | Back alignment and structure |
|---|
Probab=81.97 E-value=0.86 Score=36.91 Aligned_cols=27 Identities=11% Similarity=-0.189 Sum_probs=25.4
Q ss_pred ccc------ccCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHC------QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff------~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+|+ ++|-|||.++.|...|.++||+.+
T Consensus 43 ~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i 75 (107)
T 3ce7_A 43 KLEELRTREDRLWDCLDTVEFVLDVEEIFDVTV 75 (107)
T ss_dssp CGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCC
T ss_pred cccccCcccccCCCHHHHHHHHHHHHHHHCCCC
Confidence 775 789999999999999999999998
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.90 E-value=0.69 Score=45.78 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=27.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
++|.|-||||++|+.|++.|+++++.+..++.+.
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~ 34 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYA 34 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEee
Confidence 3699999999999999999987656555666554
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.81 E-value=3.9 Score=46.60 Aligned_cols=111 Identities=12% Similarity=0.141 Sum_probs=65.4
Q ss_pred hhhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---------------------HHHHHHHcCCchhhh
Q 042694 104 IVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---------------------FKCLKQTYGKSYQAF 162 (554)
Q Consensus 104 i~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---------------------~~~l~~~~~~~~~~~ 162 (554)
-++-....+|+|.|+.| +|+.+++.|.+.| |+++.++|... .+.+.+......
T Consensus 21 ~q~rL~~s~VlIvG~GG-lGseiak~La~aG--Vg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lN--- 94 (1015)
T 3cmm_A 21 AMLKMQTSNVLILGLKG-LGVEIAKNVVLAG--VKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELN--- 94 (1015)
T ss_dssp HHHHHTTCEEEEECCSH-HHHHHHHHHHHHC--CSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSC---
T ss_pred HHHHHhcCEEEEECCCh-HHHHHHHHHHHcC--CCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHC---
Confidence 34456788999999855 9999999999976 67888776321 111111111100
Q ss_pred ccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeec
Q 042694 163 MLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTA 242 (554)
Q Consensus 163 ~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~ 242 (554)
..-++.++.+++.. .+.++.|+||.+... ++ ..-..+.++|.+. + .+||+.++.
T Consensus 95 P~v~v~~~~~~l~~-----------~~l~~~DvVv~~~d~-~~------------~~r~~ln~~c~~~-~-iplI~~~~~ 148 (1015)
T 3cmm_A 95 AYVPVNVLDSLDDV-----------TQLSQFQVVVATDTV-SL------------EDKVKINEFCHSS-G-IRFISSETR 148 (1015)
T ss_dssp TTSCEEECCCCCCS-----------TTGGGCSEEEECTTS-CH------------HHHHHHHHHHHHH-T-CEEEEEEEE
T ss_pred CCCeEEEecCCCCH-----------HHHhcCCEEEEcCCC-CH------------HHHHHHHHHHHHc-C-CCEEEEEec
Confidence 11256666666532 255789999976330 12 1223456677763 3 578887765
Q ss_pred eecc
Q 042694 243 YVNG 246 (554)
Q Consensus 243 ~v~~ 246 (554)
+.+|
T Consensus 149 G~~G 152 (1015)
T 3cmm_A 149 GLFG 152 (1015)
T ss_dssp TTEE
T ss_pred ccEE
Confidence 5433
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=81.39 E-value=1.1 Score=43.31 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=26.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
.++++|+||||+ -+|+.++..|++.| +|++.++
T Consensus 126 l~~k~vlV~GaG-giG~aia~~L~~~G----~V~v~~r 158 (287)
T 1nvt_A 126 VKDKNIVIYGAG-GAARAVAFELAKDN----NIIIANR 158 (287)
T ss_dssp CCSCEEEEECCS-HHHHHHHHHHTSSS----EEEEECS
T ss_pred cCCCEEEEECch-HHHHHHHHHHHHCC----CEEEEEC
Confidence 468999999985 79999999999876 4555554
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=81.22 E-value=2.1 Score=42.38 Aligned_cols=34 Identities=6% Similarity=0.134 Sum_probs=27.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
.|.+|+|+||+|-+|...+..+...|. +|+..+.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga---~Vi~~~~ 183 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL---RVITTAS 183 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEECC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC---EEEEEeC
Confidence 688999999999999988877766553 6776654
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=81.14 E-value=2.4 Score=40.66 Aligned_cols=59 Identities=14% Similarity=0.308 Sum_probs=43.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.+|++++|.|++|.+|+.+...|++.+-. |.+..+. . .+++
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gAt---Vtv~h~~------------------------------t------~~L~ 198 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAGAT---VSVCHIK------------------------------T------KDLS 198 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCE---EEEECTT------------------------------C------SCHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCe---EEEEeCC------------------------------c------hhHH
Confidence 47899999999999999999999987643 3333210 1 3455
Q ss_pred HHhcCccEEEEcCCCCCc
Q 042694 188 VIAKEVDVIVNSAANTTF 205 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~ 205 (554)
...++.|+||...+..++
T Consensus 199 ~~~~~ADIVI~Avg~p~~ 216 (285)
T 3p2o_A 199 LYTRQADLIIVAAGCVNL 216 (285)
T ss_dssp HHHTTCSEEEECSSCTTC
T ss_pred HHhhcCCEEEECCCCCCc
Confidence 667899999998876444
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=81.00 E-value=3.9 Score=40.85 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=45.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
-.|.+|+|+||+|-+|...+.-+...|. +|+...+ ...+.++ ..+. +.+ + |..++++ .+..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga---~Vi~~~~~~~~~~~~-~lGa-------~~v--i--~~~~~~~---~~~v 224 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY---IPIATCSPHNFDLAK-SRGA-------EEV--F--DYRAPNL---AQTI 224 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECGGGHHHHH-HTTC-------SEE--E--ETTSTTH---HHHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCHHHHHHHH-HcCC-------cEE--E--ECCCchH---HHHH
Confidence 4678999999999999988877776664 3443333 3233333 2221 111 2 3333311 1334
Q ss_pred HHHh-cCccEEEEcCCC
Q 042694 187 DVIA-KEVDVIVNSAAN 202 (554)
Q Consensus 187 ~~l~-~~vdiViH~AA~ 202 (554)
..+. .++|+||.+.+.
T Consensus 225 ~~~t~g~~d~v~d~~g~ 241 (371)
T 3gqv_A 225 RTYTKNNLRYALDCITN 241 (371)
T ss_dssp HHHTTTCCCEEEESSCS
T ss_pred HHHccCCccEEEECCCc
Confidence 4443 369999999875
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=80.89 E-value=4.1 Score=35.22 Aligned_cols=73 Identities=12% Similarity=0.027 Sum_probs=42.9
Q ss_pred cccccHHHHHHHHhhCCCccEEEEEcchh-HHH---HHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc---
Q 042694 119 TGFLAKVLIEKILRTVPDVGKIFIINAEL-FKC---LKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK--- 191 (554)
Q Consensus 119 TGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-~~~---l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~--- 191 (554)
+|.++...++.|.+.|.+| |++.+... ... ..+... ....+...+++|++++ ++++.+.+.+
T Consensus 25 s~~p~~a~a~~La~~Ga~v--vi~~r~~~e~~~~~~~~~~~~-----~~G~~~~~i~~Dv~~~----~~~~v~~~~~~i~ 93 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQAGVDV--VINLMPDSSKDAHPDEGKLVT-----QAGMDYVYIPVDWQNP----KVEDVEAFFAAMD 93 (157)
T ss_dssp EBCCCHHHHHHHHHTTCCE--EEECSCTTSTTSCTTHHHHHH-----HTTCEEEECCCCTTSC----CHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCCCE--EEECCCcccccccccHHHHHH-----HcCCeEEEecCCCCCC----CHHHHHHHHHHHH
Confidence 3578999999999877643 55544211 100 111100 0123567788999876 3455544432
Q ss_pred ---CccEEEEcCCC
Q 042694 192 ---EVDVIVNSAAN 202 (554)
Q Consensus 192 ---~vdiViH~AA~ 202 (554)
+-|+++||||.
T Consensus 94 ~~~G~dVLVnnAgg 107 (157)
T 3gxh_A 94 QHKGKDVLVHCLAN 107 (157)
T ss_dssp HTTTSCEEEECSBS
T ss_pred hcCCCCEEEECCCC
Confidence 23999999986
|
| >2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=80.71 E-value=0.8 Score=36.54 Aligned_cols=27 Identities=0% Similarity=-0.146 Sum_probs=25.0
Q ss_pred ccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+|+ +||-|||.++.|+..++++||+.+
T Consensus 39 ~l~dDLglDSLd~VeLVm~lE~~fGi~i 66 (102)
T 2l9f_A 39 RFLDDLHMSSITVGQLVNEAARAMGLSA 66 (102)
T ss_dssp BTTTTSCCCHHHHHHHHHHHHHHHTCST
T ss_pred chhhhcCCcHHHHHHHHHHHHHHhCCCC
Confidence 665 599999999999999999999998
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=80.66 E-value=2.4 Score=40.82 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=26.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
.+.+|.|.||+|-+|+.+++.+.+ .+++.-+-.++.
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~-~~~~eLvg~vd~ 55 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQR-RKDVELCAVLVR 55 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHT-CSSEEEEEEBCC
T ss_pred CCeEEEEECCCCHHHHHHHHHHHh-CCCCEEEEEEec
Confidence 346899999999999999999886 467633334443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 554 | ||||
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 2e-07 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 8e-05 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 9e-05 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 4e-04 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 5e-04 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 0.003 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (121), Expect = 2e-07
Identities = 41/277 (14%), Positives = 83/277 (29%), Gaps = 52/277 (18%)
Query: 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPA 170
K +TG GF+ L +K++ +V + + ++ G
Sbjct: 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFEL-------- 53
Query: 171 VGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYD---IAIDINTRGPCRLMEFA 227
+ D+ + + EVD I + A+ + + NT G ++ A
Sbjct: 54 ----------INHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLA 103
Query: 228 KQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKL 287
K+ + ST+ V G P E++ + + P +E K
Sbjct: 104 KRVG--ARLLLASTSEVY----GDPEVHPQ-------SEDYWGHVNPIGPR-ACYDEGKR 149
Query: 288 ALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIIL 347
E M +++ + V + R M R++ IL
Sbjct: 150 VAE------------TMCYAYMKQEGVEVRVARIFNTFGP-----RMHMNDGRVVSNFIL 192
Query: 348 YYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQH 384
+G+ + +VN +A + +
Sbjct: 193 QALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 229
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 42.8 bits (100), Expect = 8e-05
Identities = 38/334 (11%), Positives = 96/334 (28%), Gaps = 53/334 (15%)
Query: 114 FVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGN 173
+TG GF+ ++ I++ D ++N + TY + ++ N
Sbjct: 4 LITGGAGFIGSAVVRHIIKNTQDT----VVNIDKL-----TYAGNLESLSDISESNRY-N 53
Query: 174 VCENNLGLEEDLADVIAK-EVDVIVNSAANTTFDERYD---IAIDINTRGPCRLMEFAKQ 229
++ ++ + + + D +++ AA + D I+ N G L+E A++
Sbjct: 54 FEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARK 113
Query: 230 CN--------KLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDV 281
F +ST V G ++ + + P+
Sbjct: 114 YWSALGEDKKNNFRFHHISTDEVYGDL------PHPDEVENSVTLPLFTETTAYAPS-SP 166
Query: 282 ENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRM 341
+ K + + + + + +P ++ S + + ++
Sbjct: 167 YSASKASSD--------HLVRAWR----RTYGLPTIVTNCSNN-------YGPYHFPEKL 207
Query: 342 MDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSV 401
+ +IL +G+ + I D + + A + + Y I
Sbjct: 208 IPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVT-----EGKAGETYNIGGHN 262
Query: 402 VNPLVFQDLARLLHEHYSASPCVDTKGRPIRVPS 435
+ + + V
Sbjct: 263 EKKNLDVVFTICDLLDEIVPKATSYREQITYVAD 296
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 42.5 bits (99), Expect = 9e-05
Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 12/142 (8%)
Query: 111 KNFFVTGATGFLAKVLIEKILRTVPDV----GKIFIINAELFKCLKQTYGKSYQAFMLSK 166
K +TG TG L E +L +V + N E + Q F L
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61
Query: 167 LVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEF 226
G++ + + L L +V EV + + E + D++ G RL+E
Sbjct: 62 -----GDLSDTSN-LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEA 115
Query: 227 AKQCN--KLKLFVQVSTAYVNG 246
+ K F Q ST+ + G
Sbjct: 116 IRFLGLEKKTRFYQASTSELYG 137
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 40.2 bits (93), Expect = 4e-04
Identities = 30/273 (10%), Positives = 68/273 (24%), Gaps = 42/273 (15%)
Query: 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAV 171
VTG GF+ + ++L + E+ TY + P +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAG----AYPDVPADEVIVLDSLTYAGNRANLAPVDADPRL 57
Query: 172 GNV-CENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC 230
V + + + + + N +G L++ A
Sbjct: 58 RFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA 117
Query: 231 NKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALE 290
+ V VST V G + + + + + S+ +++
Sbjct: 118 GVGR-VVHVSTNQVY----GSIDSGSWTESSPLEPNSPYAASKAG-------SDLVARAY 165
Query: 291 SKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILYYG 350
+ + + V I R + + +++ +
Sbjct: 166 HRTY------------------GLDVRITRCCNN-------YGPYQHPEKLIPLFVTNLL 200
Query: 351 KGQLTGFLVDPNGILDVVPADMVVNATLAAIAQ 383
G D + + V D +A
Sbjct: 201 DGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 3/138 (2%)
Query: 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPA 170
+TG TG L E +L +V I ++ + K+ QA + +
Sbjct: 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLH 61
Query: 171 VGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC 230
G++ ++ + + +V E+ + + + + D++ G RL++ K C
Sbjct: 62 YGDLTDSTCL-VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC 120
Query: 231 N--KLKLFVQVSTAYVNG 246
F Q ST+ + G
Sbjct: 121 GLINSVKFYQASTSELYG 138
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 37.6 bits (86), Expect = 0.003
Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 14/152 (9%)
Query: 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAV 171
VTG +G++ ++L+ DV I + N K ++ +L
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV--IILDN--------LCNSKRSVLPVIERLGGKH 51
Query: 172 GNVCENNLGLEEDLADVIAK-EVDVIVNSAANTTFDERYD---IAIDINTRGPCRLMEFA 227
E ++ E + +++ +D +++ A E D N G RL+
Sbjct: 52 PTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAM 111
Query: 228 KQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259
+ N S Q + +E
Sbjct: 112 RAANVKNFIFSSSATVYGDQPKIPYVESFPTG 143
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 554 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.97 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.96 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.95 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.95 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.95 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.95 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.95 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.95 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.94 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.94 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.94 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.94 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.93 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.93 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.93 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.93 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.91 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.91 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.91 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.91 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.88 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.85 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.85 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.84 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.82 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.82 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.81 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.81 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.79 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.74 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.42 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.33 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.31 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.31 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.3 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.29 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.28 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.27 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.27 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.26 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.26 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.26 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.26 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.25 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.25 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.25 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.24 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.24 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.24 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.24 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.23 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.23 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.22 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.22 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.22 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.22 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.22 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.22 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.21 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.21 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.2 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.2 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.18 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.18 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.13 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.13 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.13 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.12 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.12 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.11 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.09 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.09 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.05 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.03 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.02 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 98.94 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 98.93 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 98.93 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 98.9 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 98.88 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 98.86 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 98.83 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 98.82 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 98.75 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 98.73 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 98.69 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 98.56 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 98.49 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.46 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 98.42 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 98.29 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 98.24 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 98.13 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 98.01 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 97.8 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 97.75 | |
| d2jq4a1 | 83 | Hypothetical protein Atu2571 {Agrobacterium tumefa | 97.4 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.21 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 97.17 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 97.01 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.0 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.99 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.91 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.81 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 96.75 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.73 | |
| d1dv5a_ | 80 | apo-D-alanyl carrier protein {Lactobacillus casei | 96.67 | |
| d1nq4a_ | 95 | Oxytetracycline polyketide synthase acyl carrier { | 96.6 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.59 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.34 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.22 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.14 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.06 | |
| d1vkua_ | 85 | Acyl carrier protein {Thermotoga maritima [TaxId: | 96.06 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.05 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 95.47 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.45 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 95.3 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.29 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 95.28 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 94.97 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 94.96 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 94.94 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.83 | |
| d1klpa_ | 115 | Acyl carrier protein {Mycobacterium tuberculosis [ | 94.79 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 94.77 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 94.72 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 94.57 | |
| d1f80d_ | 74 | Acyl carrier protein {Bacillus subtilis [TaxId: 14 | 94.38 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 94.19 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 94.16 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 93.73 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 93.71 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 93.39 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 93.36 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 93.32 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 91.48 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 91.45 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 91.45 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.44 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 91.4 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.39 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 91.2 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 91.02 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.89 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 90.65 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.58 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 90.54 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 90.47 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 90.14 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.74 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.16 | |
| d1t8ka_ | 77 | Acyl carrier protein {Escherichia coli [TaxId: 562 | 88.86 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 88.83 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 88.77 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 88.09 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 88.04 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 87.95 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 87.03 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 85.52 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 84.59 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 84.5 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 84.37 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 83.42 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 82.45 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 82.03 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 81.93 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 81.66 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 81.14 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 81.1 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 80.73 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 80.47 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 80.28 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 80.07 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=5.4e-31 Score=268.74 Aligned_cols=260 Identities=17% Similarity=0.093 Sum_probs=179.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
|.|||||||||||++|+++|++.+++ |+++++.. ..++...... ......++..+.||+++. +.+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~---V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~d~------~~~ 70 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYE---VHGIKRRASSFNTERVDHIYQD--PHTCNPKFHLHYGDLSDT------SNL 70 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEECC-----------------------CCEEECCCCSSCH------HHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCE---EEEEECCCcccchhhHHHHHhh--hhhcCCCeEEEEeecCCH------HHH
Confidence 68999999999999999999998874 55655421 1222211111 112346899999999988 888
Q ss_pred HHHhc--CccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcC--CCceEEEEeeceecccccceeeccccCC
Q 042694 187 DVIAK--EVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCN--KLKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~--~~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
+.+++ ++|+|||+||..+. .+++...+++|+.||.+|+++|++.. +.++|||+||+.|||... +.+++|
T Consensus 71 ~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~----~~~~~E 146 (357)
T d1db3a_ 71 TRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQ----EIPQKE 146 (357)
T ss_dssp HHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCC----SSSBCT
T ss_pred HHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCC----CCCcCC
Confidence 88887 56999999998654 34667889999999999999998852 445799999999998632 223333
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCC
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGN 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~ 339 (554)
.++. .+.+ .|+.+|+.+|.+++.+.+..+++++++||+.|||+...+.. ...
T Consensus 147 ~~~~-------------~P~~------------~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~-~~~-- 198 (357)
T d1db3a_ 147 TTPF-------------YPRS------------PYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETF-VTR-- 198 (357)
T ss_dssp TSCC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS-HHH--
T ss_pred CCCC-------------CCCC------------hHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCC-Cch--
Confidence 3221 1111 24455777888887777667899999999999998643210 000
Q ss_pred CCccceeeeeccc-eeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHh
Q 042694 340 RMMDPIILYYGKG-QLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHY 418 (554)
Q Consensus 340 ~~~~~i~~~~~~G-~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~ 418 (554)
.....+.....| ......++++..+|+++|+|+|++++.++... .+++||++++ .++|+.|+++.+.+.+
T Consensus 199 -~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~~~~------~~~~yni~sg--~~~s~~~~~~~~~~~~ 269 (357)
T d1db3a_ 199 -KITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQE------QPEDFVIATG--VQYSVRQFVEMAAAQL 269 (357)
T ss_dssp -HHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSS------SCCCEEECCC--CCEEHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHHHHhCC------CCCeEEECCC--CceehHHHHHHHHHHh
Confidence 011111111222 22334578888999999999999998876432 2478999999 7999999999999998
Q ss_pred ccCC
Q 042694 419 SASP 422 (554)
Q Consensus 419 ~~~p 422 (554)
|..+
T Consensus 270 g~~~ 273 (357)
T d1db3a_ 270 GIKL 273 (357)
T ss_dssp TEEE
T ss_pred CCcc
Confidence 8653
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.96 E-value=2.9e-29 Score=252.07 Aligned_cols=258 Identities=16% Similarity=0.191 Sum_probs=188.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCcc---EEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVG---KIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~---~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
|+|||||||||||++|+++|++.++.|. +++.++......-+.... ......++.++.+|+.+. ....
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~------~~~~ 71 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLA---PVDADPRLRFVHGDIRDA------GLLA 71 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGG---GGTTCTTEEEEECCTTCH------HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhh---hhhcCCCeEEEEeccccc------hhhh
Confidence 5799999999999999999999887654 566665322111111110 111346899999999987 7777
Q ss_pred HHhcCccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 188 VIAKEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
.....+|+|+|+|+..... ..+.+..++|+.||.+++++|.+. ++++|||+||+++|+... +.++++.++..
T Consensus 72 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~I~~Ss~~~yg~~~----~~~~~E~~~~~ 146 (322)
T d1r6da_ 72 RELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQVYGSID----SGSWTESSPLE 146 (322)
T ss_dssp HHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGCCCS----SSCBCTTSCCC
T ss_pred ccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHc-CCceEEEeecceeecCCC----CCCCCCCCCCC
Confidence 8888999999999886553 356688899999999999999985 789999999999998743 22333332211
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
+.. .|+.+|..+|.+++.+.++.+++++++||+.|||+...+ .+ ....
T Consensus 147 -------------p~~------------~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~-~~------~i~~ 194 (322)
T d1r6da_ 147 -------------PNS------------PYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP-EK------LIPL 194 (322)
T ss_dssp -------------CCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT-TS------HHHH
T ss_pred -------------CCC------------HHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCc-Cc------HHHH
Confidence 111 244456777777777666679999999999999976532 01 1111
Q ss_pred eeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 345 IILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 345 i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
++..+..|.--.+.++++..+|++||+|+|++++.++.... .+++||++++ +++++.|+++.+.+.++..
T Consensus 195 ~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~~~-----~~~~~ni~~~--~~~s~~e~~~~i~~~~~~~ 264 (322)
T d1r6da_ 195 FVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR-----AGEIYHIGGG--LELTNRELTGILLDSLGAD 264 (322)
T ss_dssp HHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-----TTCEEEECCC--CEEEHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHhCCC-----CCCeeEEeec--ccchhHHHHHHHHHHhCCC
Confidence 22222233323355788899999999999999999887643 2579999998 8999999999999999865
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.95 E-value=8.5e-29 Score=252.65 Aligned_cols=266 Identities=15% Similarity=0.174 Sum_probs=181.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|+++|++.++++ |++++......-...... -....+++.+.+|++++ +.+..+.
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~v--v~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~d~------~~l~~~~ 69 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDT--VVNIDKLTYAGNLESLSD---ISESNRYNFEHADICDS------AEITRIF 69 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCE--EEEEECCCTTCCGGGGTT---TTTCTTEEEEECCTTCH------HHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCE--EEEEeCCCccccHHHHHh---hhhcCCcEEEEccCCCH------HHHHHHH
Confidence 579999999999999999999998864 566653211100011111 11246899999999988 7777776
Q ss_pred c--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcC--------CCceEEEEeeceecccccce-eeccc
Q 042694 191 K--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCN--------KLKLFVQVSTAYVNGQRRGK-VMEKP 256 (554)
Q Consensus 191 ~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~--------~~k~~v~vST~~v~~~~~~~-i~E~~ 256 (554)
+ ++|+|||+||..+.. .++....++|+.||.+++++|+++. +.++|||+||..||+..... ..|..
T Consensus 70 ~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~ 149 (361)
T d1kewa_ 70 EQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENS 149 (361)
T ss_dssp HHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTT
T ss_pred HhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccc
Confidence 5 689999999987643 3456789999999999999998752 34699999999999975321 11111
Q ss_pred cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccc
Q 042694 257 FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWM 336 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~ 336 (554)
.. .+...+.. +..+.+ .|+.+|..+|.++..+.++.+++++++||+.|||+...+
T Consensus 150 ~~--~~~~~e~~------~~~p~s------------~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~----- 204 (361)
T d1kewa_ 150 VT--LPLFTETT------AYAPSS------------PYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP----- 204 (361)
T ss_dssp SC--CCCBCTTS------CCCCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT-----
T ss_pred cC--CCCcccCC------CCCCCC------------HHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCc-----
Confidence 11 00001100 001111 234445666666666666679999999999999976532
Q ss_pred cCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHh
Q 042694 337 EGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHE 416 (554)
Q Consensus 337 ~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~ 416 (554)
+. ....++..+..|.-..++++++..+|+++|+|+|++++.++..... +.+||++++ +++++.|+++.+.+
T Consensus 205 ~~--~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a~ai~~~~~~~~~-----~~~~Ni~s~--~~~s~~~~~~~i~~ 275 (361)
T d1kewa_ 205 EK--LIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKA-----GETYNIGGH--NEKKNLDVVFTICD 275 (361)
T ss_dssp TS--HHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCCT-----TCEEEECCC--CEEEHHHHHHHHHH
T ss_pred Cc--HHHHHHHHHHcCCCcEEeCCCCeEEeCEEHHHHHHHHHHHHhcCCC-----CCeEEECCC--CCcchHHHHhHhhh
Confidence 11 1112222223444344568889999999999999999998876432 469999998 79999999999988
Q ss_pred HhccC
Q 042694 417 HYSAS 421 (554)
Q Consensus 417 ~~~~~ 421 (554)
.++..
T Consensus 276 ~~~~~ 280 (361)
T d1kewa_ 276 LLDEI 280 (361)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 77654
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.1e-29 Score=247.68 Aligned_cols=255 Identities=15% Similarity=0.122 Sum_probs=175.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||+|++|+++|++.+++ |+++++....+. +... ......++....+|+.+. +.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~---V~~~d~~~~~~~-~~~~---~~~~~~~~d~~~~~~~~~-----------~~ 63 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHE---VTVVDNFFTGRK-RNVE---HWIGHENFELINHDVVEP-----------LY 63 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCG-GGTG---GGTTCTTEEEEECCTTSC-----------CC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCE---EEEEeCCCcCCH-HHHH---HhcCCCceEEEehHHHHH-----------HH
Confidence 78999999999999999999998875 444442100000 0000 011234566777777654 33
Q ss_pred cCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccc-ceeeccccCCCCCcccc
Q 042694 191 KEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRR-GKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 191 ~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~-~~i~E~~~~~~~~~~~~ 266 (554)
.++|+|||+||.++. ..++...+++|+.||.+|+++|++. ++ +|||+||..||+... ..+.|..+.+.++.
T Consensus 64 ~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~-~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~--- 138 (312)
T d2b69a1 64 IEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPI--- 138 (312)
T ss_dssp CCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSS---
T ss_pred cCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEChheecCCCCCCCCccccCCCCCC---
Confidence 579999999998764 3456788999999999999999985 44 799999999998642 22344333222111
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
.+. . .|..+|..+|.+++...+..|++++++||+.|||+...+-.+. ....++
T Consensus 139 ----------~p~------~------~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~-----~i~~~i 191 (312)
T d2b69a1 139 ----------GPR------A------CYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR-----VVSNFI 191 (312)
T ss_dssp ----------STT------H------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCC-----HHHHHH
T ss_pred ----------CCc------c------HHHHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCcc-----HHHHHH
Confidence 111 1 2444567778777776666799999999999999765431110 111122
Q ss_pred eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCCC
Q 042694 347 LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPC 423 (554)
Q Consensus 347 ~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p~ 423 (554)
..+..|....+++++...+|++||+|++++++.++... ...+||++++ .++++.++.+.+.+.++..+.
T Consensus 192 ~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~------~~~~~n~~~~--~~~~~~~~~~~i~~~~~~~~~ 260 (312)
T d2b69a1 192 LQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN------VSSPVNLGNP--EEHTILEFAQLIKNLVGSGSE 260 (312)
T ss_dssp HHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS------CCSCEEESCC--CEEEHHHHHHHHHHHHTCCCC
T ss_pred HHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhc------cCCceEecCC--cccchhhHHHHHHHHhCCCCc
Confidence 22233444455688889999999999999998876432 2468999998 899999999999999987643
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=4.8e-28 Score=245.04 Aligned_cols=264 Identities=15% Similarity=0.127 Sum_probs=190.1
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc------hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCC
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLE 182 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs 182 (554)
+.|+|||||||||+|++|+++|++.|++ |+++++ ...+.++..... ....++..+.+|+.+.
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~---V~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~d~----- 82 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQK---VVGLDNFATGHQRNLDEVRSLVSE----KQWSNFKFIQGDIRNL----- 82 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCHHHHHHHHHHSCH----HHHTTEEEEECCTTSH-----
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCE---EEEEECCCCcchhhHHHHHHhhhh----cccCCeeEEeeccccc-----
Confidence 5689999999999999999999999874 455532 223334433321 2346789999999987
Q ss_pred HHHHHHHhcCccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCC
Q 042694 183 EDLADVIAKEVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 183 ~~~~~~l~~~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
..........+.|+|+||.... .++....+++|+.||.+++++|.+. ++++|||+||..|||... +.++.|
T Consensus 83 -~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~i~~SS~~vyg~~~----~~~~~E 156 (341)
T d1sb8a_ 83 -DDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDHP----GLPKVE 156 (341)
T ss_dssp -HHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCC----CSSBCT
T ss_pred -cccccccccccccccccccccccccccCccchhheeehhHHHHHHHHHhc-CCceEEEcccceeeCCCC----CCCccC
Confidence 7777788899999999997664 3456678999999999999999995 789999999999998743 223333
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCC
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGN 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~ 339 (554)
+++. .+.+ .|+.+|..+|.+++.+.+..+++++|+||+.|||+...+-..+ ..
T Consensus 157 ~~~~-------------~p~~------------~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~-~~- 209 (341)
T d1sb8a_ 157 DTIG-------------KPLS------------PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAY-AA- 209 (341)
T ss_dssp TCCC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTT-CC-
T ss_pred CCCC-------------CCCC------------cchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCch-hh-
Confidence 2221 1111 2444567778777776666789999999999999876542221 11
Q ss_pred CCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhc
Q 042694 340 RMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYS 419 (554)
Q Consensus 340 ~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~ 419 (554)
.....+..+..|.-..+.+++...+|+++|+|+|.++..++..... ..+.+||++++ +++|+.|+++.+.+.++
T Consensus 210 -~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~---~~~~~~~~~~~--~~~si~~i~~~i~~~~~ 283 (341)
T d1sb8a_ 210 -VIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLD---ARNQVYNIAVG--GRTSLNQLFFALRDGLA 283 (341)
T ss_dssp -HHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGG---GCSEEEEESCS--CCEEHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhhhhcccc---ccceeeeeccc--ccchHHHHHHHHHHHhc
Confidence 0111111122243334557888899999999999998887754322 13579999998 79999999999999988
Q ss_pred cCCC
Q 042694 420 ASPC 423 (554)
Q Consensus 420 ~~p~ 423 (554)
....
T Consensus 284 ~~~~ 287 (341)
T d1sb8a_ 284 ENGV 287 (341)
T ss_dssp HTTC
T ss_pred cccc
Confidence 7643
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.1e-27 Score=238.84 Aligned_cols=262 Identities=15% Similarity=0.208 Sum_probs=175.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc------hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
|+|||||||||||++|++.|++++++| +.+++ ........ ....++.+++||+++. +
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V---~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~Dl~d~------~ 63 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV---IILDNLCNSKRSVLPVIER--------LGGKHPTFVEGDIRNE------A 63 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEE---EEEECCSSCCTTHHHHHHH--------HHTSCCEEEECCTTCH------H
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEE---EEEECCCCcchhhHHHHHh--------hcCCCCEEEEeecCCH------H
Confidence 579999999999999999999988754 44432 11111111 1235788999999988 8
Q ss_pred HHHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCC
Q 042694 185 LADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCM 259 (554)
Q Consensus 185 ~~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~ 259 (554)
.+..+++ ++|+|||+||..... +++..++++|+.||.++|++|++. ++++|||+||..+++.... ....+
T Consensus 64 ~l~~~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~-~v~~~i~~Ss~~vy~~~~~----~~~~e 138 (338)
T d1udca_ 64 LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSATVYGDQPK----IPYVE 138 (338)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCCS----SSBCT
T ss_pred HHHHHHhccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHh-CCCEEEecCcceEEccccc----ccccc
Confidence 8887776 799999999987643 356789999999999999999995 8999999999999976431 11111
Q ss_pred CCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhh-hhhcCCCcEEEEccceeeecccCCccccccC
Q 042694 260 GDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGL-GLERGDIPVVIIRPSVIESTCKEPFSGWMEG 338 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~-~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~ 338 (554)
.++. ..+.+ .|..+|..+|.++.. .....+++++|+||+.|||+...+.-|....
T Consensus 139 ~~~~------------~~p~~------------~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~ 194 (338)
T d1udca_ 139 SFPT------------GTPQS------------PYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194 (338)
T ss_dssp TSCC------------CCCSS------------HHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCC
T ss_pred cccc------------CCCcc------------hHHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCcc
Confidence 1100 01111 223345556665543 3345689999999999999865432221111
Q ss_pred C--CCccceeee--eccceeeeee------cCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHH
Q 042694 339 N--RMMDPIILY--YGKGQLTGFL------VDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQ 408 (554)
Q Consensus 339 ~--~~~~~i~~~--~~~G~~~~~~------~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~ 408 (554)
. ...-+.+.. .+.+....+. .++....|+++|+|++.++..+...... ...+++||++++ +++++.
T Consensus 195 ~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~D~~~~~~~~~~~~~~--~~~~~i~Ni~~~--~~~si~ 270 (338)
T d1udca_ 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLAN--KPGVHIYNLGAG--VGNSVL 270 (338)
T ss_dssp SSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHTT--CCEEEEEEESCS--SCEEHH
T ss_pred ccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEeehhhhcccccccccc--ccCcceeeecCC--CCCcHH
Confidence 0 000011110 0111111121 2466778999999999998877665432 223579999998 799999
Q ss_pred HHHHHHHhHhccCC
Q 042694 409 DLARLLHEHYSASP 422 (554)
Q Consensus 409 e~~~~~~~~~~~~p 422 (554)
|+++.+.+.+|..+
T Consensus 271 e~~~~i~~~~g~~~ 284 (338)
T d1udca_ 271 DVVNAFSKACGKPV 284 (338)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHCCCC
Confidence 99999999998653
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.95 E-value=1e-27 Score=243.20 Aligned_cols=268 Identities=19% Similarity=0.225 Sum_probs=185.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|+|||||||||+|++|+++|++.+++| +++.++.......... .......++..+.||+.+. +.+..+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v-~v~~~d~~~~~~~~~~----~~~~~~~~i~~~~~Di~d~------~~~~~~ 70 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLDKLTYAGNKAN----LEAILGDRVELVVGDIADA------ELVDKL 70 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTC-EEEEEECCCTTCCGGG----TGGGCSSSEEEEECCTTCH------HHHHHH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCe-EEEEEeCCCccccHHH----HHHhhcCCeEEEEccCCCH------HHHHHH
Confidence 6899999999999999999999999988 6777763211100000 1122346899999999987 889999
Q ss_pred hcCccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccc
Q 042694 190 AKEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKE 266 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~ 266 (554)
.+..+.|+|+|+..... .++.+.+++|+.||.++++.|... + .+++++||..+|+... ..|......... .+
T Consensus 71 ~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~-~-~k~i~~ss~~vyg~~~--~~~~~~~~~~~~-~~ 145 (346)
T d1oc2a_ 71 AAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-D-IRFHHVSTDEVYGDLP--LREDLPGHGEGP-GE 145 (346)
T ss_dssp HTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-T-CEEEEEEEGGGGCCBC--CGGGSTTTTCST-TS
T ss_pred HhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccc-c-ccccccccceEecccC--ccccccccccCc-cc
Confidence 99999999999987653 345678899999999999999985 3 5899999999998632 122211110000 00
Q ss_pred cccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcccee
Q 042694 267 NFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPII 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~ 346 (554)
...+.. +..+.+ .|+.+|..+|.+++...+..+++++|+||++|||+...+- +.+ ...+
T Consensus 146 ~~~e~~--~~~p~s------------~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~-~~~------~~~i 204 (346)
T d1oc2a_ 146 KFTAET--NYNPSS------------PYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-KFI------PRQI 204 (346)
T ss_dssp SBCTTS--CCCCCS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-SHH------HHHH
T ss_pred ccccCC--CCCCCC------------HHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCcc-chh------HHHH
Confidence 000000 001111 2334456667766666566699999999999999765321 111 1111
Q ss_pred eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 347 LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 347 ~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
.....|....+.++++..+++++++|+|++++.++..... +..||++++ ++.++.++++.+.+.++..
T Consensus 205 ~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~i~~~~~~~ 272 (346)
T d1oc2a_ 205 TNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRM-----GETYLIGAD--GEKNNKEVLELILEKMGQP 272 (346)
T ss_dssp HHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCCT-----TCEEEECCS--CEEEHHHHHHHHHHHTTCC
T ss_pred HHHHcCCceeEeCCCCccccccchhhHHHHHHHHHhhccc-----Ccccccccc--ccccchHHHHHHHHHhCCC
Confidence 1222344445668889999999999999999887765433 479999998 7999999999999998865
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4e-27 Score=238.83 Aligned_cols=271 Identities=12% Similarity=0.095 Sum_probs=179.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
|.|||||||||||++|+++|++++++ |+++++ ...+...... .....++.++.+|+.+. ++++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~---V~~~d~~~~~~~~~~~~~~-----~~~~~~v~~~~~Dl~d~------~~l~ 67 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYD---CVVADNLSNSTYDSVARLE-----VLTKHHIPFYEVDLCDR------KGLE 67 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCTHHHHHHH-----HHHTSCCCEEECCTTCH------HHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCe---EEEEECCCCcchhHHHhHH-----hhcccCCeEEEeecCCH------HHHH
Confidence 57999999999999999999998874 555532 1122222111 11345788999999988 8888
Q ss_pred HHhc--CccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCC
Q 042694 188 VIAK--EVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDS 262 (554)
Q Consensus 188 ~l~~--~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~ 262 (554)
.+.+ ++|+|||+||.... .+.......+|+.||.+++++|++. ++++|+|+||..||+...+...+.++++..+
T Consensus 68 ~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~-~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~ 146 (347)
T d1z45a2 68 KVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSATVYGDATRFPNMIPIPEECP 146 (347)
T ss_dssp HHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCCGGGSTTCCSBCTTSC
T ss_pred HHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhc-ccceEEeecceeeecCcccCCCCCccccccC
Confidence 7765 89999999998764 3355688999999999999999994 8999999999999997543223333333222
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh--hcCCCcEEEEccceeeecccCCccccccCCC
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL--ERGDIPVVIIRPSVIESTCKEPFSGWMEGNR 340 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~--~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~ 340 (554)
. .+.+ .|+.+|..+|.++..+. ...+++++++||+.|||+...+.-|......
T Consensus 147 ~-------------~p~~------------~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~ 201 (347)
T d1z45a2 147 L-------------GPTN------------PYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGI 201 (347)
T ss_dssp C-------------CCCS------------HHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSS
T ss_pred C-------------CCCC------------hhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCcccc
Confidence 1 1111 23444566666665543 2458999999999999976544333211100
Q ss_pred --Cccceeeee--ccceeeeee------cCCCcccccchhhHHHHHHHHHHHHhcccC--CCCCeEEEeeCCCCCcccHH
Q 042694 341 --MMDPIILYY--GKGQLTGFL------VDPNGILDVVPADMVVNATLAAIAQHGMIQ--KPDINVYQIASSVVNPLVFQ 408 (554)
Q Consensus 341 --~~~~i~~~~--~~G~~~~~~------~~~~~~~d~vpVD~va~aii~~~~~~~~~~--~~~~~vyn~~~~~~~~it~~ 408 (554)
..-+.+... +.+....+. .++....|++++.+++.+++.++......+ ....++||++++ +++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~--~~~s~~ 279 (347)
T d1z45a2 202 PNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSG--KGSTVF 279 (347)
T ss_dssp CCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCS--CCEEHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeeeeeeeecccccccccccccccccccccccccceecCC--CcccHH
Confidence 000101000 111111111 234456788888888888888765533211 123589999998 899999
Q ss_pred HHHHHHHhHhccCCC
Q 042694 409 DLARLLHEHYSASPC 423 (554)
Q Consensus 409 e~~~~~~~~~~~~p~ 423 (554)
|+++.+.+.++....
T Consensus 280 e~~~~i~~~~~~~~~ 294 (347)
T d1z45a2 280 EVYHAFCKASGIDLP 294 (347)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHCCCCc
Confidence 999999999987644
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=5.5e-27 Score=241.91 Aligned_cols=282 Identities=12% Similarity=0.085 Sum_probs=178.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---HHHHHHHcCC------------chhhhccCcEEEEEccC
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---FKCLKQTYGK------------SYQAFMLSKLVPAVGNV 174 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---~~~l~~~~~~------------~~~~~~~~kv~~v~GDl 174 (554)
||+|||||||||||++|+++|++.|++ |+++|+-. ..... .... .+......+++++.|||
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~---V~~iDnl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl 76 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYE---VCIVDNLVRRLFDHQL-GLESLTPIASIHDRISRWKALTGKSIELYVGDI 76 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCHHHHHHHHH-TCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCE---EEEEecCCcccccccc-cccccccccchHHHHHHHHhhcCCCcEEEEccC
Confidence 689999999999999999999998874 55554211 11000 0000 01112346889999999
Q ss_pred CCCCCCCCHHHHHHHhc--CccEEEEcCCCCCch------hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecc
Q 042694 175 CENNLGLEEDLADVIAK--EVDVIVNSAANTTFD------ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 175 ~~~~lGLs~~~~~~l~~--~vdiViH~AA~v~~~------~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~ 246 (554)
.+. +.++.+++ ++|+|||+||..... ..+...+..||.||.+++++|++.+..+.|++.||..+++
T Consensus 77 ~d~------~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~ 150 (393)
T d1i24a_ 77 CDF------EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYG 150 (393)
T ss_dssp TSH------HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGC
T ss_pred CCH------HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccc
Confidence 988 88888876 679999999986643 3355778999999999999999976666888999988887
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.......|...........+. .+.+..+.. .|..+|..+|.++..+.+..+++++++||+.|||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~------------~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G 214 (393)
T d1i24a_ 151 TPNIDIEEGYITITHNGRTDT----LPYPKQASS------------FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG 214 (393)
T ss_dssp CCSSCBCSSEEEEEETTEEEE----EECCCCCCS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEEC
T ss_pred ccccccccccccccccccccc----ccccccccc------------HHHHHhhhhcccccccccccceeeeecccccccC
Confidence 643222222111100000000 000111112 2444566777777666667799999999999999
Q ss_pred cccCCcc--ccc----cCCCCcc----ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEE
Q 042694 327 TCKEPFS--GWM----EGNRMMD----PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQ 396 (554)
Q Consensus 327 ~~~~p~~--g~~----~~~~~~~----~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn 396 (554)
+...+.. +.. ....... .++.....|....+.+++...+|++||+|++++++.++......+ ...+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g--~~~~~~ 292 (393)
T d1i24a_ 215 VKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAG--EFRVFN 292 (393)
T ss_dssp SCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTT--CEEEEE
T ss_pred CCccccccccccccccccccccccchhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccc--eeeeec
Confidence 8764321 111 0000111 111122234444556889999999999999999999887543321 112233
Q ss_pred eeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 397 IASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 397 ~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
.+ + +++++.|+++.+.+..+..+
T Consensus 293 ~~-~--~~~si~el~~~i~~~~~~~~ 315 (393)
T d1i24a_ 293 QF-T--EQFSVNELASLVTKAGSKLG 315 (393)
T ss_dssp EC-S--EEEEHHHHHHHHHHHHHTTT
T ss_pred CC-C--CeeEHHHHHHHHHHHHHhhC
Confidence 32 2 57899999999988766543
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=8.3e-27 Score=235.83 Aligned_cols=272 Identities=14% Similarity=0.148 Sum_probs=183.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|+++|+++++ . +|++++.... ... ......+++++.||+++. ++..+.+.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~-~-~V~~ld~~~~-----~~~---~~~~~~~~~~i~~Di~~~-----~~~~~~~~ 65 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH-Y-EVYGLDIGSD-----AIS---RFLNHPHFHFVEGDISIH-----SEWIEYHV 65 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-C-EEEEEESCCG-----GGG---GGTTCTTEEEEECCTTTC-----SHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-C-EEEEEeCCCc-----chh---hhccCCCeEEEECccCCh-----HHHHHHHH
Confidence 5799999999999999999998774 2 6777754210 000 011246899999999876 24445466
Q ss_pred cCccEEEEcCCCCCchh---hHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccc
Q 042694 191 KEVDVIVNSAANTTFDE---RYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKEN 267 (554)
Q Consensus 191 ~~vdiViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~ 267 (554)
+++|+|||+||...... .+......|+.||.+++++|.+. +. +++|+||..+++....... .+..+..++.
T Consensus 66 ~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~-~~-~~~~~ss~~~~~~~~~~~~----~~~~~~~~~~ 139 (342)
T d2blla1 66 KKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-RK-RIIFPSTSEVYGMCSDKYF----DEDHSNLIVG 139 (342)
T ss_dssp HHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEECCGGGGBTCCCSSB----CTTTCCCBCC
T ss_pred hCCCccccccccccccccccCCccccccccccccccccccccc-cc-ccccccccccccccccccc----cccccccccc
Confidence 78999999999877543 44578999999999999999984 44 5678999999887532111 1111100000
Q ss_pred ccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCC-CCcccee
Q 042694 268 FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGN-RMMDPII 346 (554)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~-~~~~~i~ 346 (554)
+ ...+.. .|..+|..+|.++....++.|++++|+||+.++|+...+..+-.... .....++
T Consensus 140 -----~-~~~p~~------------~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~ 201 (342)
T d2blla1 140 -----P-VNKPRW------------IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLI 201 (342)
T ss_dssp -----C-TTCGGG------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHH
T ss_pred -----c-cCCCcc------------hhhhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHH
Confidence 0 000111 23344667777777666667999999999999998654432211110 0111112
Q ss_pred eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCCCC
Q 042694 347 LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPCV 424 (554)
Q Consensus 347 ~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p~~ 424 (554)
..+..|....++++++..+++++|+|+|+++..++..... ...+++||++++. +++|+.|+++.+.+.++..+..
T Consensus 202 ~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~~--~~~g~~~Nig~~~-~~~t~~~l~~~i~~~~~~~~~~ 276 (342)
T d2blla1 202 LNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGN--RCDGEIINIGNPE-NEASIEELGEMLLASFEKHPLR 276 (342)
T ss_dssp HHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGG--TTTTEEEEECCTT-SEEEHHHHHHHHHHHHHTCTTG
T ss_pred HHHHhCCCccccCCCCeeeeecccccccceeeeehhhccc--cCCCeEEEEeccc-chhHHHHHHHHHHHHhCCCccc
Confidence 2222354445668889999999999999999999876432 2346899998763 5789999999999999876543
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=7.3e-27 Score=238.30 Aligned_cols=262 Identities=13% Similarity=0.011 Sum_probs=180.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|+|||||||||||++|+++|++++++ |+.++... ... ............+|+.+. +.+..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~---V~~~d~~~-------~~~--~~~~~~~~~~~~~D~~~~------~~~~~ 75 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHY---VIASDWKK-------NEH--MTEDMFCDEFHLVDLRVM------ENCLK 75 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSC-------CSS--SCGGGTCSEEEECCTTSH------HHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEeCCC-------ccc--hhhhcccCcEEEeechhH------HHHHH
Confidence 5788999999999999999999998875 44454210 000 011234556788999887 77788
Q ss_pred HhcCccEEEEcCCCCCc----hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc-eeeccccCCCCCc
Q 042694 189 IAKEVDVIVNSAANTTF----DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG-KVMEKPFCMGDSI 263 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~-~i~E~~~~~~~~~ 263 (554)
+.+++|+|||+|+.... ..........|+.||.+++++|++ .++++|||+||+.+++.... ..+|.....
T Consensus 76 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~-~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~---- 150 (363)
T d2c5aa1 76 VTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI-NGIKRFFYASSACIYPEFKQLETTNVSLKE---- 150 (363)
T ss_dssp HHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHH-TTCSEEEEEEEGGGSCGGGSSSSSSCEECG----
T ss_pred HhhcCCeEeecccccccccccccccccccccccchhhHHHHhHHh-hCcccccccccccccccccccccccccccc----
Confidence 88999999999987665 456778899999999999999999 48999999999999987432 111111110
Q ss_pred ccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCcc
Q 042694 264 AKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMD 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~ 343 (554)
.+. . +..+.+ .|+.+|..+|.+++...+..|++++++||+.|||+...+...+... ...
T Consensus 151 -~e~-~-----~~~p~~------------~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~--~~~ 209 (363)
T d2c5aa1 151 -SDA-W-----PAEPQD------------AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKA--PAA 209 (363)
T ss_dssp -GGG-S-----SBCCSS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCH--HHH
T ss_pred -ccC-C-----cCCCCC------------HHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCccccccccc--ccc
Confidence 000 0 011122 2344566777777766666699999999999999765432221110 000
Q ss_pred ceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 344 PIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 344 ~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
........+......+++...+|+++++|++.+++.++... .+.+||++++ .++++.|+++.+.+..++..
T Consensus 210 ~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~~~------~~~~~ni~~~--~~~s~~~l~~~i~~~~g~~~ 280 (363)
T d2c5aa1 210 FCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD------FREPVNIGSD--EMVSMNEMAEMVLSFEEKKL 280 (363)
T ss_dssp HHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS------CCSCEEECCC--CCEEHHHHHHHHHHTTTCCC
T ss_pred cccccccccccccccCCCCeEEEEeehhHHHHHHHHHHhCC------CCCeEEEecC--CcccHHHHHHHHHHHhCCCC
Confidence 00011112222334467788899999999999998876532 2468999999 89999999999999988653
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.94 E-value=1e-25 Score=231.49 Aligned_cols=277 Identities=15% Similarity=0.143 Sum_probs=182.7
Q ss_pred CcEEEEecccccccHHHHHHHHhh-CCCccEEEEEcc-----------hhHHHH---HHHcCCchhhhccCcEEEEEccC
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINA-----------ELFKCL---KQTYGKSYQAFMLSKLVPAVGNV 174 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~-----------~~~~~l---~~~~~~~~~~~~~~kv~~v~GDl 174 (554)
+|+|||||||||||++|+++||+. ++ .|+++|+ ...+.. ..............++.++.||+
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~---~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 78 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNH---SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDV 78 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCC---EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCT
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCC---EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcc
Confidence 579999999999999999999975 44 5677642 111111 11111111222345788999999
Q ss_pred CCCCCCCCHHHHHHHhc---CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccc
Q 042694 175 CENNLGLEEDLADVIAK---EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 175 ~~~~lGLs~~~~~~l~~---~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~ 248 (554)
+++ +.++.+++ .+|+|||+||..... .........|+.||.+++++|++ .+++.++++||.++++..
T Consensus 79 ~d~------~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~-~~~~~~~~~~s~~~~~~~ 151 (383)
T d1gy8a_ 79 RNE------DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLL-HKCDKIIFSSSAAIFGNP 151 (383)
T ss_dssp TCH------HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH-TTCCEEEEEEEGGGTBSC
T ss_pred cCH------HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhc-cCCccccccccccccccc
Confidence 988 77777664 679999999987654 34567789999999999999998 589999999999998764
Q ss_pred cc---eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 249 RG---KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~---~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
.. ..++.++.+.... .+.. .|+.+|..+|.+++...+..|++++++||+.||
T Consensus 152 ~~~~~~~~~~~~~e~~~~-------------~p~~------------~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vy 206 (383)
T d1gy8a_ 152 TMGSVSTNAEPIDINAKK-------------SPES------------PYGESKLIAERMIRDCAEAYGIKGICLRYFNAC 206 (383)
T ss_dssp CC-----CCCCBCTTSCC-------------BCSS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEE
T ss_pred ccccccccccccccccCC-------------CCCC------------HHHhhHhHHHHHHHHHHHHhCCCEEEEecceee
Confidence 31 1112222222211 1111 244456777777777666679999999999999
Q ss_pred ecccCCc-cccccCCCCcccee-----------------eeeccceeeee------ecCCCcccccchhhHHHHHHHHHH
Q 042694 326 STCKEPF-SGWMEGNRMMDPII-----------------LYYGKGQLTGF------LVDPNGILDVVPADMVVNATLAAI 381 (554)
Q Consensus 326 g~~~~p~-~g~~~~~~~~~~i~-----------------~~~~~G~~~~~------~~~~~~~~d~vpVD~va~aii~~~ 381 (554)
|+...+. +.+........+.+ .....+..... .+|+...+|++||+|+|++++.++
T Consensus 207 G~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~ 286 (383)
T d1gy8a_ 207 GAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILAL 286 (383)
T ss_dssp CCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHH
T ss_pred ccCccccccccccccchhHHHHHHHHHhhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHH
Confidence 9876431 11111100000000 00001111111 134567789999999999999987
Q ss_pred HHhcccC----CCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCCC
Q 042694 382 AQHGMIQ----KPDINVYQIASSVVNPLVFQDLARLLHEHYSASPC 423 (554)
Q Consensus 382 ~~~~~~~----~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p~ 423 (554)
......+ ....++||++++ +++++.|+++.+.+.++..+.
T Consensus 287 ~~~~~~~~~~~~~~~~i~Ni~s~--~~~s~~el~~~i~~~~~~~~~ 330 (383)
T d1gy8a_ 287 DYVEKLGPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTGHPIP 330 (383)
T ss_dssp HHHHTCCTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHCCCCC
T ss_pred hhhccccccccccCccEEEeCCC--CceeHHHHHHHHHHHhCCCCc
Confidence 6543211 123589999998 799999999999999886543
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=1.6e-26 Score=231.39 Aligned_cols=254 Identities=15% Similarity=0.046 Sum_probs=179.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc----hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA----ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~----~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
|+|||||||||||++|++.|+++|++| +.+++ ...+++.... ...++.++.+|+.+. +.+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V---~~~~r~~~~~~~~~l~~~~-------~~~~~~~~~~Dl~d~------~~~ 64 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRV---HGLVARRSSDTRWRLRELG-------IEGDIQYEDGDMADA------CSV 64 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEE---EEEECCCSSCCCHHHHHTT-------CGGGEEEEECCTTCH------HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEE---EEEECCCCcccHHHHHHhc-------ccCCcEEEEccccCh------HHh
Confidence 689999999999999999999988754 44432 1234444322 235789999999988 666
Q ss_pred HHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCC
Q 042694 187 DVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGD 261 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~ 261 (554)
..... ..++++|+|+..... .+....+..|+.||.+++++|++.+..++|++.||+.+++.... ..++|.+
T Consensus 65 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~----~~~~E~~ 140 (321)
T d1rpna_ 65 QRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQA----ERQDENT 140 (321)
T ss_dssp HHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSS----SSBCTTS
T ss_pred hhhhccccccccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccC----CCCCCCC
Confidence 66554 678999998876654 35678899999999999999999766678999999999876431 1222222
Q ss_pred CcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCC
Q 042694 262 SIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRM 341 (554)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~ 341 (554)
+. .+.+ .|+.+|..+|.+++.+.+..+++++++||+.+||+...+ .+..+ .
T Consensus 141 ~~-------------~p~~------------~Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~--~~~~~--~ 191 (321)
T d1rpna_ 141 PF-------------YPRS------------PYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGI--EFVTR--K 191 (321)
T ss_dssp CC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCT--TSHHH--H
T ss_pred Cc-------------cccC------------hhHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccc--cccHH--H
Confidence 11 1112 234456677888777776678999999999999976421 11100 0
Q ss_pred ccceeeeeccc-eeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhcc
Q 042694 342 MDPIILYYGKG-QLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 342 ~~~i~~~~~~G-~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~ 420 (554)
....+.....| ......++++..+|++||+|+|++++.++.... ...||++++ ++.++.++++.+.+..+.
T Consensus 192 i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~~------~~~~ni~~~--~~~s~~~~~~~~~~~~~~ 263 (321)
T d1rpna_ 192 VTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK------ADDYVVATG--VTTTVRDMCQIAFEHVGL 263 (321)
T ss_dssp HHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS------CCCEEECCS--CEEEHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcCC------cCCceeccc--ccceehhhhHHHHHHhCC
Confidence 01111111222 222345788888999999999999999876532 367999998 899999999999998876
Q ss_pred C
Q 042694 421 S 421 (554)
Q Consensus 421 ~ 421 (554)
.
T Consensus 264 ~ 264 (321)
T d1rpna_ 264 D 264 (321)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.9e-26 Score=233.57 Aligned_cols=261 Identities=17% Similarity=0.090 Sum_probs=175.4
Q ss_pred cEE-EEecccccccHHHHHHHHhhCCCccEEEEEcch--h--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 111 KNF-FVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--L--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 111 ~~V-lITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
|+| ||||||||||++|+++|+++|++| +.+++. . ..++..... ........++..+.||++++ +.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V---~~i~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~------~~ 70 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEV---HGIVRRSSSFNTGRIEHLYK-NPQAHIEGNMKLHYGDLTDS------TC 70 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEE---EEEECCCSSCCCTTTGGGC----------CEEEEECCTTCH------HH
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEE---EEEECCCcccchhhHHHHhh-chhhhccCCcEEEEeecCCc------hh
Confidence 568 999999999999999999998754 433321 0 011111000 01111345889999999988 77
Q ss_pred HHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcC--CCceEEEEeeceecccccceeeccccC
Q 042694 186 ADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCN--KLKLFVQVSTAYVNGQRRGKVMEKPFC 258 (554)
Q Consensus 186 ~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~--~~k~~v~vST~~v~~~~~~~i~E~~~~ 258 (554)
+..+.. ++++|+|+||..... .+.....++|+.||.+++++|+++. +.++|||+||..|||... +.+++
T Consensus 71 ~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~----~~~~~ 146 (347)
T d1t2aa_ 71 LVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQ----EIPQK 146 (347)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCS----SSSBC
T ss_pred hHHHHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCC----CCCCC
Confidence 777765 788999999987653 3556778999999999999999853 345899999999998632 33344
Q ss_pred CCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccC
Q 042694 259 MGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEG 338 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~ 338 (554)
|+++. .+.+ .|+.+|..+|+++..+.+..+++++|+||+.|||+...+... ..
T Consensus 147 E~~~~-------------~P~~------------~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~--~~ 199 (347)
T d1t2aa_ 147 ETTPF-------------YPRS------------PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFV--TR 199 (347)
T ss_dssp TTSCC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSH--HH
T ss_pred CCCCC-------------CCCC------------HHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCcc--cc
Confidence 33321 1112 244556777777776666679999999999999975432111 00
Q ss_pred CCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHh
Q 042694 339 NRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHY 418 (554)
Q Consensus 339 ~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~ 418 (554)
. ....+......+......++++..+++++|+|++++++.++.... ...|+++.. ...++.+..+......
T Consensus 200 ~-~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~ 270 (347)
T d1t2aa_ 200 K-ISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDE------PEDFVIATG--EVHSVREFVEKSFLHI 270 (347)
T ss_dssp H-HHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSS------CCCEEECCS--CCEEHHHHHHHHHHHT
T ss_pred c-cceeeehhhcCCcceeecCCCcceeeeeEecHHHHHHHHHhhcCC------Cccceeccc--cccccchhhhhhhhhh
Confidence 0 001111111112223445788889999999999999999886532 246888777 6889999999998888
Q ss_pred ccC
Q 042694 419 SAS 421 (554)
Q Consensus 419 ~~~ 421 (554)
++.
T Consensus 271 ~~~ 273 (347)
T d1t2aa_ 271 GKT 273 (347)
T ss_dssp TCC
T ss_pred cce
Confidence 865
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.1e-25 Score=222.95 Aligned_cols=265 Identities=12% Similarity=0.118 Sum_probs=175.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---------hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
|+|||||||||+|++|+++|++++++| +++++ ...+.++... .....++.++.+|+++.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V---~~ld~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~d~---- 70 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLP---VVIDNFHNAFRGGGSLPESLRRVQ-----ELTGRSVEFEEMDILDQ---- 70 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCE---EEEECSSSSCBCSSSSBHHHHHHH-----HHHTCCCEEEECCTTCH----
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEE---EEEECCCccccccccchHHHHHHH-----HhcCCCcEEEEeecccc----
Confidence 689999999999999999999998765 44421 1111221111 11346889999999987
Q ss_pred CHHHHHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccc
Q 042694 182 EEDLADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKP 256 (554)
Q Consensus 182 s~~~~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~ 256 (554)
+.+..+.. .+++|+|+||..+.. ..+.+.+++|+.||.+++++|++. ++++|+|+||+.+++.......+..
T Consensus 71 --~~l~~~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~-~v~~~i~~ss~~~~~~~~~~~~~~~ 147 (346)
T d1ek6a_ 71 --GALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSATVYGNPQYLPLDEA 147 (346)
T ss_dssp --HHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGGCSCSSSSBCTT
T ss_pred --ccccccccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhc-Ccccccccccceeeecccccccccc
Confidence 77777654 677899999987643 245678999999999999999984 8999999999999987532111110
Q ss_pred cCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhh-hcCCCcEEEEccceeeecccCCcccc
Q 042694 257 FCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGL-ERGDIPVVIIRPSVIESTCKEPFSGW 335 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~-~~~glp~~I~Rp~~V~g~~~~p~~g~ 335 (554)
.+. ..+.+ .|..+|..+|..+.... ...+++.+++||+.+||+...+..|.
T Consensus 148 ~~~----------------~~~~~------------~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~ 199 (346)
T d1ek6a_ 148 HPT----------------GGCTN------------PYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGE 199 (346)
T ss_dssp SCC----------------CCCSS------------HHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCC
T ss_pred ccc----------------cccCC------------hHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCc
Confidence 000 01111 12333455665554433 34689999999999999876433322
Q ss_pred ccCCCC--ccceee--eeccceeeeee------cCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcc
Q 042694 336 MEGNRM--MDPIIL--YYGKGQLTGFL------VDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPL 405 (554)
Q Consensus 336 ~~~~~~--~~~i~~--~~~~G~~~~~~------~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~i 405 (554)
...... ..+.+. ..+.+..-.+. .++...+|++||+|+|+++..++..... ....++||++++ +++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~--~~~~~i~Ni~~~--~~~ 275 (346)
T d1ek6a_ 200 DPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKE--QCGCRIYNLGTG--TGY 275 (346)
T ss_dssp CCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTT--TCCEEEEEECCS--CCE
T ss_pred cccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeEEEEEeccchhhhhcccccc--ccCceEEEeCCC--Ccc
Confidence 211100 011111 11122111111 2455678999999999998887665432 234689999998 899
Q ss_pred cHHHHHHHHHhHhccCC
Q 042694 406 VFQDLARLLHEHYSASP 422 (554)
Q Consensus 406 t~~e~~~~~~~~~~~~p 422 (554)
++.|+++.+.+.++..+
T Consensus 276 s~~dl~~~i~~~~~~~~ 292 (346)
T d1ek6a_ 276 SVLQMVQAMEKASGKKI 292 (346)
T ss_dssp EHHHHHHHHHHHHCSCC
T ss_pred cHHHHHHHHHHHhCCCC
Confidence 99999999999998754
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.93 E-value=1.2e-25 Score=227.27 Aligned_cols=281 Identities=14% Similarity=0.126 Sum_probs=176.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|++|||||||||||++|+++|+++|++| +.++++ ...+.+..... ..........+.||+.++ +.+.
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V--~~~vR~~~~~~~~~~~~~---~~~~~~~~~~~~~Dl~~~------~~~~ 78 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYKV--RGTARSASKLANLQKRWD---AKYPGRFETAVVEDMLKQ------GAYD 78 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEE--EEEESSHHHHHHHHHHHH---HHSTTTEEEEECSCTTST------TTTT
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCEE--EEEeCCchhHHHHHHhhh---ccccccccEEEeccccch------hhhh
Confidence 58999999999999999999999998755 223333 22233322211 111223445688999988 7777
Q ss_pred HHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccccc
Q 042694 188 VIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKEN 267 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~ 267 (554)
.++.++|+|+|+|+.+.+..+....+..|+.||.+++++|.+.+++++|||+||..+.+...... +..+.+.+....+.
T Consensus 79 ~~~~~~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~-~~~~~~e~~~~~~~ 157 (342)
T d1y1pa1 79 EVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNV-EGIYLDEKSWNLES 157 (342)
T ss_dssp TTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTC-CCCEECTTCCCHHH
T ss_pred hhcccchhhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCC-CCcccccccccccc
Confidence 78889999999999999888888899999999999999999877899999999987644321100 11111111000000
Q ss_pred ccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhh--cCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 268 FVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLE--RGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~--~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
..... ..+..+...... .|+.+|..+|.++..+.+ ..++.++++||+.|+|+...|..... ....+
T Consensus 158 ~~~~~--~~~e~~~~~p~~------~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~----~~~~~ 225 (342)
T d1y1pa1 158 IDKAK--TLPESDPQKSLW------VYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSG----STSGW 225 (342)
T ss_dssp HHHHH--HSCTTSTTHHHH------HHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCC----HHHHH
T ss_pred ccccc--cccccCCCCCcC------cccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCcccccc----chHHH
Confidence 00000 001111111112 345556777777665543 34688899999999997543321110 01111
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSAS 421 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~ 421 (554)
+.....|..... ...+...++++|+|+|.+++.++..... ...|+++++ ++++|.|+++.+.+.+...
T Consensus 226 ~~~l~~g~~~~~-~~~~~~~~~v~v~Dva~~~i~~l~~~~~-----~g~~~~~~~--~~~t~~eia~~i~k~~p~~ 293 (342)
T d1y1pa1 226 MMSLFNGEVSPA-LALMPPQYYVSAVDIGLLHLGCLVLPQI-----ERRRVYGTA--GTFDWNTVLATFRKLYPSK 293 (342)
T ss_dssp HHHHHTTCCCHH-HHTCCSEEEEEHHHHHHHHHHHHHCTTC-----CSCEEEECC--EEECHHHHHHHHHHHCTTS
T ss_pred HHHHHcCCcCcc-cCCccceeeeeHHHHHHHHHHhhcCccc-----cceEEEEcC--CceEHHHHHHHHHHHcCCC
Confidence 111222322111 2244457899999999999988876433 234567777 6899999999999987543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.91 E-value=1.1e-24 Score=219.02 Aligned_cols=276 Identities=15% Similarity=0.134 Sum_probs=172.6
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEc----chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN----AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~----~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|||||||||||++|+++|++++++ |++++ ....+++.... ...+++++.||+.+. +.+.
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~---V~~id~~~~~~~~~~~~~~~-------~~~~~~~i~~Di~~~------~~l~ 65 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGID---LIVFDNLSRKGATDNLHWLS-------SLGNFEFVHGDIRNK------NDVT 65 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCCSTTHHHHHHHHH-------TTCCCEEEECCTTCH------HHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCE---EEEEECCCcccchhHHHHhh-------ccCCcEEEEcccCCH------HHHH
Confidence 6999999999999999999998874 55554 22333333322 245789999999987 7888
Q ss_pred HHhc--CccEEEEcCCCCCchh---hHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccc-ccc-eeeccccCCC
Q 042694 188 VIAK--EVDVIVNSAANTTFDE---RYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQ-RRG-KVMEKPFCMG 260 (554)
Q Consensus 188 ~l~~--~vdiViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~-~~~-~i~E~~~~~~ 260 (554)
.+.+ ++|+|||+||.+.... ++....++||.||.+|+++|.+. +.+++++.||..++.. ... ...+......
T Consensus 66 ~~~~~~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~ 144 (338)
T d1orra_ 66 RLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLEQYKYNETETRYT 144 (338)
T ss_dssp HHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCTTSCEEECSSCEE
T ss_pred HHHHhcCCceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccc
Confidence 7776 4699999999987643 46788999999999999999996 5665555555544433 211 1111000000
Q ss_pred CCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccc--cccC
Q 042694 261 DSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSG--WMEG 338 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g--~~~~ 338 (554)
....+...... .+..+. . .|...+..+|.++.......+....++|++.+++....+... .+..
T Consensus 145 ~~~~~~~~~~~--~~~~~~------~------~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (338)
T d1orra_ 145 CVDKPNGYDES--TQLDFH------S------PYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGW 210 (338)
T ss_dssp ETTCTTCBCTT--SCCCCC------H------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHH
T ss_pred ccccccCcccC--Cccccc------c------ccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccch
Confidence 00000000000 000000 1 112224455555555555568999999999998765432111 1100
Q ss_pred CCCccceee-eeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhH
Q 042694 339 NRMMDPIIL-YYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEH 417 (554)
Q Consensus 339 ~~~~~~i~~-~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~ 417 (554)
.....+. ..+.+..-.+.+++...+|+++|+|++++++.++...... .+++||+..+..+++++.|+++.+.+.
T Consensus 211 --~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~v~D~~~~~~~~l~~~~~~---~~~~~~i~~~~~~~~s~~e~~~~i~~~ 285 (338)
T d1orra_ 211 --FCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKI---RGNAFNIGGTIVNSLSLLELFKLLEDY 285 (338)
T ss_dssp --HHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHH---TTCEEEESSCGGGEEEHHHHHHHHHHH
T ss_pred --hhHHHHHHHhccCCceEEeCCCceeEeeecccchhhHHHHHHhccccc---cCccccccccccccccHHHHHHHHHHH
Confidence 0000000 1122333345678888999999999999999987653321 247999976655789999999999999
Q ss_pred hccCCC
Q 042694 418 YSASPC 423 (554)
Q Consensus 418 ~~~~p~ 423 (554)
.+..+.
T Consensus 286 ~~~~~~ 291 (338)
T d1orra_ 286 CNIDMR 291 (338)
T ss_dssp HTCCCC
T ss_pred HCCCce
Confidence 887543
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.2e-24 Score=217.08 Aligned_cols=252 Identities=9% Similarity=0.038 Sum_probs=169.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
.|+|||||||||||++|+++|++.++.+ +.++.. . ..|+.+. +....+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~v---i~~~~~------------------~-----~~~~~~~------~~~~~~ 49 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVE---LVLRTR------------------D-----ELNLLDS------RAVHDF 49 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEE---EECCCT------------------T-----TCCTTCH------HHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEE---EEecCc------------------h-----hccccCH------HHHHHH
Confidence 4689999999999999999999987632 333211 1 1356555 666656
Q ss_pred hc--CccEEEEcCCCCCch----hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc-eeeccccCCCCC
Q 042694 190 AK--EVDVIVNSAANTTFD----ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG-KVMEKPFCMGDS 262 (554)
Q Consensus 190 ~~--~vdiViH~AA~v~~~----~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~-~i~E~~~~~~~~ 262 (554)
.+ .+|+|+|+|+.+... .+..+.+..|+.||.+++++|.+. ++++|||+||.+||+.... .++|....+..+
T Consensus 50 ~~~~~~d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~ 128 (315)
T d1e6ua_ 50 FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSCIYPKLAKQPMAESELLQGTL 128 (315)
T ss_dssp HHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGSCTTCCSSBCGGGTTSSCC
T ss_pred HhhcCCCEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECCceEcCCCCCCCccCCccccCCC
Confidence 54 699999999887642 356677899999999999999994 8999999999999987431 233322111110
Q ss_pred cccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccc---cccCC
Q 042694 263 IAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSG---WMEGN 339 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g---~~~~~ 339 (554)
.++. . .|+.+|..+|.+++.+.+..|++++|+||+.|||+...+... .....
T Consensus 129 -------------~~~~------~------~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~ 183 (315)
T d1e6ua_ 129 -------------EPTN------E------PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 183 (315)
T ss_dssp -------------CGGG------H------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHH
T ss_pred -------------CCCC------C------HHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceee
Confidence 0000 1 244456777777776666669999999999999986542211 11100
Q ss_pred CCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcc----cCCCCCeEEEeeCCCCCcccHHHHHHHHH
Q 042694 340 RMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGM----IQKPDINVYQIASSVVNPLVFQDLARLLH 415 (554)
Q Consensus 340 ~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~----~~~~~~~vyn~~~~~~~~it~~e~~~~~~ 415 (554)
...........+..-...+++...+++++++|++.++..+...... ........++++++ .+.+..++.+.+.
T Consensus 184 -~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~i~ 260 (315)
T d1e6ua_ 184 -LRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTG--VDCTIRELAQTIA 260 (315)
T ss_dssp -HHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCS--CCEEHHHHHHHHH
T ss_pred -eccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHHHhhhhccccccccccccccccccCCC--cchHHHHHHHHHH
Confidence 0000011112233334456777789999999999999887654321 11234578999888 7899999999999
Q ss_pred hHhccCC
Q 042694 416 EHYSASP 422 (554)
Q Consensus 416 ~~~~~~p 422 (554)
+..+...
T Consensus 261 ~~~~~~~ 267 (315)
T d1e6ua_ 261 KVVGYKG 267 (315)
T ss_dssp HHHTCCS
T ss_pred HHhCCCc
Confidence 9887653
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=9.6e-25 Score=220.03 Aligned_cols=260 Identities=15% Similarity=0.055 Sum_probs=172.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh----HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL----FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~----~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
|++||||||||||+||++.|+++|++ |+.+++.. ..++..... .........+..+.+|+.+. +.+
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~---V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Di~~~------~~~ 71 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYE---VHGLIRRSSNFNTQRINHIYI-DPHNVNKALMKLHYADLTDA------SSL 71 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCH------HHH
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCE---EEEEECCCcccchhhhhhhhh-hhhhccccceEEEEccccCH------HHH
Confidence 68999999999999999999999875 44444210 011110000 00111245788999999987 666
Q ss_pred HHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHc----CCCceEEEEeeceecccccceeecccc
Q 042694 187 DVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQC----NKLKLFVQVSTAYVNGQRRGKVMEKPF 257 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~v~vST~~v~~~~~~~i~E~~~ 257 (554)
...++ ++|+|||+||..... +.+......|+.|+.+++++|+.+ ....++++.||+++++.....++|
T Consensus 72 ~~~~~~~~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E--- 148 (339)
T d1n7ha_ 72 RRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSE--- 148 (339)
T ss_dssp HHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCT---
T ss_pred HHHHhhhccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCCC---
Confidence 66554 789999999997764 456688999999999999998753 234578888998887765433333
Q ss_pred CCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcccccc
Q 042694 258 CMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWME 337 (554)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~ 337 (554)
..+. .+.+ .|+.+|..+|.++..+.+..+++++|+||+.|||+...+ ++..
T Consensus 149 --~~~~-------------~p~~------------~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~--~~~~ 199 (339)
T d1n7ha_ 149 --TTPF-------------HPRS------------PYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGE--NFVT 199 (339)
T ss_dssp --TSCC-------------CCCS------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCT--TSHH
T ss_pred --CCCC-------------CCcc------------hhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCC--CCCc
Confidence 2221 1111 244456778888777777779999999999999976432 1111
Q ss_pred CCCCccceeeeeccc-eeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHh
Q 042694 338 GNRMMDPIILYYGKG-QLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHE 416 (554)
Q Consensus 338 ~~~~~~~i~~~~~~G-~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~ 416 (554)
. .....+.....| ....+.+++...+|+++|+|+|+++..++.... ...+++..+ .+.++.++++.+.+
T Consensus 200 ~--~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a~~~~~~~~~~~------~~~~~~~~~--~~~s~~~~~~~~~~ 269 (339)
T d1n7ha_ 200 R--KITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEK------PDDYVVATE--EGHTVEEFLDVSFG 269 (339)
T ss_dssp H--HHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSS------CCEEEECCS--CEEEHHHHHHHHHH
T ss_pred c--hhhHHHHHHhcCCCCeEEeCCCCccccceeeehHHHHHHHHHhcCC------CCccccccc--cccccchhhhhhhh
Confidence 0 000001111112 222345778889999999999999998876532 235556665 68899999999999
Q ss_pred HhccCC
Q 042694 417 HYSASP 422 (554)
Q Consensus 417 ~~~~~p 422 (554)
.++...
T Consensus 270 ~~~~~~ 275 (339)
T d1n7ha_ 270 YLGLNW 275 (339)
T ss_dssp HTTCCG
T ss_pred hhhccc
Confidence 988653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.91 E-value=3.9e-24 Score=217.03 Aligned_cols=270 Identities=12% Similarity=0.110 Sum_probs=173.7
Q ss_pred hhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 106 KFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 106 ~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+|+++|+|||||||||||++|+++|++.|++| .++.........+.+... ..++++.+.||++++ +.
T Consensus 4 ~~~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V-~~~~r~~~~~~~~~~~~~------~~~~i~~~~~Dl~d~------~~ 70 (356)
T d1rkxa_ 4 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGATV-KGYSLTAPTVPSLFETAR------VADGMQSEIGDIRDQ------NK 70 (356)
T ss_dssp HHHTTCEEEEETTTSHHHHHHHHHHHHTTCEE-EEEESSCSSSSCHHHHTT------TTTTSEEEECCTTCH------HH
T ss_pred hhhCCCEEEEECCCCHHHHHHHHHHHHCCCEE-EEEECCCCccHHHHhhhh------cccCCeEEEeeccCh------Hh
Confidence 57999999999999999999999999998755 222222211111111111 245789999999987 77
Q ss_pred HHHHhc--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCC
Q 042694 186 ADVIAK--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMG 260 (554)
Q Consensus 186 ~~~l~~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~ 260 (554)
+..+.+ .+|+|+|+||..... ..+.....+|+.||.+++++|+..+..+.+++.||..++..... +.+..+.
T Consensus 71 l~~~~~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~---~~~~~~~ 147 (356)
T d1rkxa_ 71 LLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEW---IWGYREN 147 (356)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCS---SSCBCTT
T ss_pred hhhhhhhchhhhhhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccccccccccccc---ccccccc
Confidence 766665 689999999986543 45678899999999999999998766677777777666554321 1111111
Q ss_pred CCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhh---------hhhcCCCcEEEEccceeeecccCC
Q 042694 261 DSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGL---------GLERGDIPVVIIRPSVIESTCKEP 331 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~---------~~~~~glp~~I~Rp~~V~g~~~~p 331 (554)
.+ ..+.+.++..+ ...|..+.. ...+.++++++.||+.|||+.+.+
T Consensus 148 ~~-------------~~p~~~y~~~k------------~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~ 202 (356)
T d1rkxa_ 148 EA-------------MGGYDPYSNSK------------GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA 202 (356)
T ss_dssp SC-------------BCCSSHHHHHH------------HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC
T ss_pred cc-------------cCCCCcccccc------------ccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcch
Confidence 11 12233332222 222222211 112457899999999999976532
Q ss_pred ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHH
Q 042694 332 FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLA 411 (554)
Q Consensus 332 ~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~ 411 (554)
....+ ..++.. ..+..+...++++...++++|+|++.+++.++......+.......+........+++.+++
T Consensus 203 ~~~~i------~~~~~~-~~~~~~~~~~~~~~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (356)
T d1rkxa_ 203 LDRIV------PDILRA-FEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIV 275 (356)
T ss_dssp SSCHH------HHHHHH-HHTTCCEECSCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHH
T ss_pred hhHHH------HHHHHH-HhCCCceEEeeccccccccccccccchhhhhhhhhcccccccccccccccccccccccchhh
Confidence 22111 111111 12223344577888899999999999999888765432221223444444333789999999
Q ss_pred HHHHhHhccCCC
Q 042694 412 RLLHEHYSASPC 423 (554)
Q Consensus 412 ~~~~~~~~~~p~ 423 (554)
+.+.+.++..+.
T Consensus 276 ~~i~~~~~~~~~ 287 (356)
T d1rkxa_ 276 EQMVKYWGEGAS 287 (356)
T ss_dssp HHHHHHHCTTCC
T ss_pred hhhHHHhCCCcc
Confidence 999999987643
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.1e-22 Score=193.73 Aligned_cols=209 Identities=17% Similarity=0.159 Sum_probs=145.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|||||||||+|++|+++|++++ .+.+|+++.+.. .........++....+|+.+. +++..
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g-~~~~v~~~~R~~---------~~~~~~~~~~i~~~~~D~~~~------~~~~~ 76 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRRK---------LTFDEEAYKNVNQEVVDFEKL------DDYAS 76 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESSC---------CCCCSGGGGGCEEEECCGGGG------GGGGG
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC-CCCEEEEEecCh---------hhhcccccceeeeeeeccccc------ccccc
Confidence 45789999999999999999999987 455788776421 001112345778888999877 77788
Q ss_pred HhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccc
Q 042694 189 IAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENF 268 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~ 268 (554)
..+++|+|||+|+......+.....++|+.++.+++++|++ .++++|||+||..++....
T Consensus 77 ~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~v~~fi~~Ss~~~~~~~~------------------- 136 (232)
T d2bkaa1 77 AFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKA-GGCKHFNLLSSKGADKSSN------------------- 136 (232)
T ss_dssp GGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHH-TTCCEEEEECCTTCCTTCS-------------------
T ss_pred cccccccccccccccccccchhhhhhhcccccceeeecccc-cCccccccCCccccccCcc-------------------
Confidence 88899999999998877788889999999999999999999 5899999999987754321
Q ss_pred cccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCc-EEEEccceeeecccCCccc-cccCCCCcccee
Q 042694 269 VSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIP-VVIIRPSVIESTCKEPFSG-WMEGNRMMDPII 346 (554)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp-~~I~Rp~~V~g~~~~p~~g-~~~~~~~~~~i~ 346 (554)
. .|..+|.. +|..+...+++ ++|+|||.|+|+..+..++ ++ ...++
T Consensus 137 -----------------~------~Y~~~K~~----~E~~l~~~~~~~~~IlRP~~i~G~~~~~~~~~~~-----~~~~~ 184 (232)
T d2bkaa1 137 -----------------F------LYLQVKGE----VEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWL-----VRKFF 184 (232)
T ss_dssp -----------------S------HHHHHHHH----HHHHHHTTCCSEEEEEECCEEECTTGGGSHHHHH-----HHHHH
T ss_pred -----------------c------hhHHHHHH----hhhccccccccceEEecCceeecCCCcCcHHHHH-----HHHHh
Confidence 0 11222333 44444445665 8999999999976532111 10 00100
Q ss_pred eeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeC
Q 042694 347 LYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIAS 399 (554)
Q Consensus 347 ~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~ 399 (554)
+.+ +........||++|+|++++.++..... .+++.+.+
T Consensus 185 --------~~~-~~~~~~~~~I~~~dvA~a~i~~~~~~~~-----~~~~i~~~ 223 (232)
T d2bkaa1 185 --------GSL-PDSWASGHSVPVVTVVRAMLNNVVRPRD-----KQMELLEN 223 (232)
T ss_dssp --------CSC-CTTGGGGTEEEHHHHHHHHHHHHTSCCC-----SSEEEEEH
T ss_pred --------hcc-CCcccCCCeEEHHHHHHHHHHHHhcCcc-----CCeEEEcH
Confidence 001 1222334569999999999988765432 35676654
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.85 E-value=3.7e-21 Score=183.24 Aligned_cols=231 Identities=13% Similarity=0.050 Sum_probs=154.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++++|||||||||+|++++++|++++++| .|+++.+..- ... ....+++.+.+|+.++ +++..
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v-~v~~~~R~~~-~~~---------~~~~~~~~~~~d~~~~------~~~~~ 64 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQ-GKE---------KIGGEADVFIGDITDA------DSINP 64 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTC-EEEEEESCHH-HHH---------HTTCCTTEEECCTTSH------HHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcE-EEEEEcCCHH-HHH---------hccCCcEEEEeeeccc------ccccc
Confidence 46799999999999999999999999887 6666543221 111 1234678899999988 88888
Q ss_pred HhcCccEEEEcCCCCCch----------------hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceeccccccee
Q 042694 189 IAKEVDVIVNSAANTTFD----------------ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKV 252 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~----------------~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i 252 (554)
+.+++|+|||+|+..... ........+|+.|+++++..+... ..+.+.+.|+.........
T Consensus 65 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~-- 141 (252)
T d2q46a1 65 AFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSMGGTNPDHP-- 141 (252)
T ss_dssp HHTTCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEEETTTTCTTCG--
T ss_pred ccccceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc-cccccccccccccCCCCcc--
Confidence 999999999999875321 123456788999999999999884 7788888887655433210
Q ss_pred eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc
Q 042694 253 MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF 332 (554)
Q Consensus 253 ~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~ 332 (554)
.. . .+...+...+...+......+++++|+||+.++|+.....
T Consensus 142 -------------~~----------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~~~~ 184 (252)
T d2q46a1 142 -------------LN----------K--------------LGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVR 184 (252)
T ss_dssp -------------GG----------G--------------GGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCTTSS
T ss_pred -------------cc----------c--------------ccccchhhhhhhhhhhhhcccccceeecceEEECCCcchh
Confidence 00 0 0111223334444444555799999999999999754322
Q ss_pred cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCC-CCcccHHHHH
Q 042694 333 SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSV-VNPLVFQDLA 411 (554)
Q Consensus 333 ~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~-~~~it~~e~~ 411 (554)
..+.. .... .......+||+||||++++.++..+.. .+++||++++. ....++.++.
T Consensus 185 ~~~~~-----------~~~~-------~~~~~~~~i~~~Dva~a~~~~l~~~~~----~g~~~~i~~~~~~~~~~~~~~~ 242 (252)
T d2q46a1 185 ELLVG-----------KDDE-------LLQTDTKTVPRADVAEVCIQALLFEEA----KNKAFDLGSKPEGTSTPTKDFK 242 (252)
T ss_dssp CEEEE-----------STTG-------GGGSSCCEEEHHHHHHHHHHHTTCGGG----TTEEEEEEECCTTTSCCCCCHH
T ss_pred hhhhc-----------cCcc-------cccCCCCeEEHHHHHHHHHHHhCCccc----cCcEEEEeeCCCCCChhHHHHH
Confidence 11110 0000 012235689999999999998876543 25899998752 1344566766
Q ss_pred HHHHhHh
Q 042694 412 RLLHEHY 418 (554)
Q Consensus 412 ~~~~~~~ 418 (554)
+++.+..
T Consensus 243 ~lf~~i~ 249 (252)
T d2q46a1 243 ALFSQVT 249 (252)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
Confidence 6655443
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.85 E-value=4.9e-21 Score=187.06 Aligned_cols=224 Identities=16% Similarity=0.153 Sum_probs=155.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|+++|.+.|+ .|+.++.. .+|+.+. +..+.++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~---~Vi~~~r~------------------------~~D~~d~------~~~~~~l 48 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNV---EVIPTDVQ------------------------DLDITNV------LAVNKFF 48 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSE---EEEEECTT------------------------TCCTTCH------HHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---EEEEeech------------------------hccCCCH------HHHHHHH
Confidence 6799999999999999999998776 45555421 1377666 6666666
Q ss_pred c--CccEEEEcCCCCCch---hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 191 K--EVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 191 ~--~vdiViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
+ ++|+|||+|+..... ..+......|+..+..+++.+.. ....+++.||..+++... ..++.+.+..
T Consensus 49 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~~~~~~~ss~~v~~~~~----~~~~~e~~~~-- 120 (281)
T d1vl0a_ 49 NEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYS--VGAEIVQISTDYVFDGEA----KEPITEFDEV-- 120 (281)
T ss_dssp HHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHH--HTCEEEEEEEGGGSCSCC----SSCBCTTSCC--
T ss_pred HHcCCCEEEeeccccccccccccchhhccccccccccccccccc--ccccccccccceeeeccc----cccccccccc--
Confidence 5 789999999987643 45678889999999999998886 356888899988877642 2222222211
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
.+.. .|..++...|.+.+..+.+.+|+||+.|||+.....+.++..
T Consensus 121 -----------~~~~----------------~~~~~k~~~e~~~~~~~~~~~i~R~~~vyG~~~~~~~~~~~~------- 166 (281)
T d1vl0a_ 121 -----------NPQS----------------AYGKTKLEGENFVKALNPKYYIVRTAWLYGDGNNFVKTMINL------- 166 (281)
T ss_dssp -----------CCCS----------------HHHHHHHHHHHHHHHHCSSEEEEEECSEESSSSCHHHHHHHH-------
T ss_pred -----------cchh----------------hhhhhhhHHHHHHHHhCCCccccceeEEeCCCcccccchhhh-------
Confidence 1111 122233444444444588999999999999765322222211
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
....+... . .++...++++++|+++++..++.... ..+||++++ +++|+.|+++.+.+.+|+.+
T Consensus 167 --~~~~~~~~-~--~~~~~~~~i~v~D~~~~~~~~~~~~~------~g~~~~~~~--~~~s~~e~~~~i~~~~g~~~ 230 (281)
T d1vl0a_ 167 --GKTHDELK-V--VHDQVGTPTSTVDLARVVLKVIDEKN------YGTFHCTCK--GICSWYDFAVEIFRLTGIDV 230 (281)
T ss_dssp --HHHCSEEE-E--ESSCEECCEEHHHHHHHHHHHHHHTC------CEEEECCCB--SCEEHHHHHHHHHHHHCCCC
T ss_pred --hccCCcee-e--cCCceeccchhhhhhhhhhhhhhhcc------cCceeEeCC--CccchHHHHHHHHHHhCCCc
Confidence 00112222 2 23577899999999999999886633 259999998 79999999999999999764
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.84 E-value=3.8e-21 Score=190.35 Aligned_cols=237 Identities=12% Similarity=0.071 Sum_probs=163.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-hh---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-EL---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++|||||||||+|++|+++|+++|++| +++.+ .. ....... ......++.++.||+.+. +.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V---~~~~R~~~~~~~~~~~~~-----~~~~~~~v~~v~~d~~d~------~~ 68 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPT---YVLFRPEVVSNIDKVQML-----LYFKQLGAKLIEASLDDH------QR 68 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCE---EEECCSCCSSCHHHHHHH-----HHHHTTTCEEECCCSSCH------HH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEE---EEEECCCcccchhHHHHH-----hhhccCCcEEEEeecccc------hh
Confidence 4579999999999999999999998765 33322 11 1111111 111345789999999988 88
Q ss_pred HHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 186 ADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
.....+++++++|+++.... ..|..++.++++.|++. +..++++.||.+++..... .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~a~~~-~~~~~v~~Ss~g~~~~~~~----~---------- 125 (312)
T d1qyda_ 69 LVDALKQVDVVISALAGGVL--------SHHILEQLKLVEAIKEA-GNIKRFLPSEFGMDPDIME----H---------- 125 (312)
T ss_dssp HHHHHTTCSEEEECCCCSSS--------STTTTTHHHHHHHHHHS-CCCSEEECSCCSSCTTSCC----C----------
T ss_pred hhhhccCcchhhhhhhhccc--------ccchhhhhHHHHHHHHh-cCCcEEEEeeccccCCCcc----c----------
Confidence 88888999999999986432 46788899999999985 5667788887665443210 0
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
+. .+..++..++..++......+++++++||+.++|........+.....
T Consensus 126 -----------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~----- 175 (312)
T d1qyda_ 126 -----------AL--------------QPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMM----- 175 (312)
T ss_dssp -----------CC--------------SSTTHHHHHHHHHHHHHHHTTCCBCEEECCEEHHHHTTTSSCTTCCSS-----
T ss_pred -----------cc--------------chhhhhhHHHHHHHHhhcccccceEEeccceeecCCccchhhHHHHhh-----
Confidence 00 112234445555666666679999999999999976544333322110
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
..+....++++++..+++|+++|+|++++.++..+...+ ..+|+++++ +.+|++|+++.+.+..|+..
T Consensus 176 ----~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~---~~~~~~~~~--~~~s~~e~~~~~~~~~g~~~ 243 (312)
T d1qyda_ 176 ----PPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLN---KTMYIRPPM--NILSQKEVIQIWERLSEQNL 243 (312)
T ss_dssp ----CCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGGSS---SEEECCCGG--GEEEHHHHHHHHHHHHTCCC
T ss_pred ----hcccccccccccccccceeeHHHHHHHHHHHhcCccccC---ceEEEeCCC--cCCCHHHHHHHHHHHHCCCC
Confidence 111112344778888999999999999999886644322 346777776 78999999999999998753
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.82 E-value=9.7e-21 Score=186.33 Aligned_cols=231 Identities=13% Similarity=0.120 Sum_probs=154.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hh---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--EL---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.|+|||||||||+|++|+++|+++|++| +++.+ .. .+.... .......++.++.+|+.+. .
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V---~~l~R~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~~~------~ 68 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPT---FLLVRESTASSNSEKAQL-----LESFKASGANIVHGSIDDH------A 68 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCE---EEECCCCCTTTTHHHHHH-----HHHHHTTTCEEECCCTTCH------H
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeE---EEEECCCccccchhHHHH-----HHhhccCCcEEEEeecccc------h
Confidence 4789999999999999999999998764 44432 11 111111 1112345788899999987 7
Q ss_pred HHHHHhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcc
Q 042694 185 LADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIA 264 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~ 264 (554)
......++++.|+|+++. .++.++.++++++... +.+.+++.|+.........
T Consensus 69 ~~~~~~~~~~~vi~~~~~------------~~~~~~~~~~~a~~~~-~~~~~~~~s~~~~~~~~~~-------------- 121 (307)
T d1qyca_ 69 SLVEAVKNVDVVISTVGS------------LQIESQVNIIKAIKEV-GTVKRFFPSEFGNDVDNVH-------------- 121 (307)
T ss_dssp HHHHHHHTCSEEEECCCG------------GGSGGGHHHHHHHHHH-CCCSEEECSCCSSCTTSCC--------------
T ss_pred hhhhhhhhceeeeecccc------------cccchhhHHHHHHHHh-ccccceeeecccccccccc--------------
Confidence 777788899999999875 3556777888988885 7788888887544332110
Q ss_pred cccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccc
Q 042694 265 KENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDP 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~ 344 (554)
..... . .+...+...+......+++++|+||+.++|....++..+...
T Consensus 122 -------------~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~i~r~~~v~g~~~~~~~~~~~~------ 169 (307)
T d1qyca_ 122 -------------AVEPA---K----------SVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLT------ 169 (307)
T ss_dssp -------------CCTTH---H----------HHHHHHHHHHHHHHHHTCCBEEEECCEEHHHHTTTTTCTTCS------
T ss_pred -------------ccccc---c----------ccccccccccchhhccCCCceecccceecCCCccchhhhhhh------
Confidence 00000 0 011112223333334589999999999999765443332211
Q ss_pred eeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 345 IILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 345 i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
...+....++++++..+++|+++|+|++++.++..+...+ ..+||++++ +.+|+.|+++.+.+..|+++
T Consensus 170 ----~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~---~~~~~~~~~--~~~s~~ei~~~~~~~~G~~~ 238 (307)
T d1qyca_ 170 ----APPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLN---KTLYLRLPA--NTLSLNELVALWEKKIDKTL 238 (307)
T ss_dssp ----SCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGTT---EEEECCCGG--GEEEHHHHHHHHHHHTTSCC
T ss_pred ----hhhcccceeeecccccccCCcHHHHHHHHHHHhcChhhcC---ceeEEeCCC--CccCHHHHHHHHHHHHCCCC
Confidence 1122223445778889999999999999998876543322 346777777 79999999999999999753
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=9.6e-21 Score=186.95 Aligned_cols=243 Identities=16% Similarity=0.170 Sum_probs=144.9
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEcc----hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 113 FFVTGATGFLAKVLIEKILRTVPDVGKIFIINA----ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 113 VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~----~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|||||||||||++|+++|+++|+. .|+++|+ .....+.+. . ..|..+. ++....
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~--~V~~~d~~~~~~~~~~~~~~-----------~----~~~~~~~-----~~~~~~ 59 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDL-----------N----IADYMDK-----EDFLIQ 59 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTS-----------C----CSEEEEH-----HHHHHH
T ss_pred EEEecCccHHHHHHHHHHHhCCCC--eEEEEECCCCcchhhccccc-----------c----hhhhccc-----hHHHHH
Confidence 899999999999999999998753 3555542 111111110 0 0111111 111222
Q ss_pred Hh-----cCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccc-eeeccccCCCC
Q 042694 189 IA-----KEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRG-KVMEKPFCMGD 261 (554)
Q Consensus 189 l~-----~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~-~i~E~~~~~~~ 261 (554)
+. ..+++|+|+||.... ..+.+.....|+.++.+++++++.. +++ +++.||..+++.... ..+|...
T Consensus 60 ~~~~~~~~~~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~i~-~v~~ss~~~~~~~~~~~~~~~~~---- 133 (307)
T d1eq2a_ 60 IMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EIP-FLYASSAATYGGRTSDFIESREY---- 133 (307)
T ss_dssp HHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TCC-EEEEEEGGGGTTCCSCBCSSGGG----
T ss_pred Hhhhhcccchhhhhhhcccccccccccccccccccccccccccccccc-ccc-ccccccccccccccccccccccc----
Confidence 22 468999999997554 3466777889999999999999984 564 677777777655321 1111100
Q ss_pred CcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCC
Q 042694 262 SIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRM 341 (554)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~ 341 (554)
..+.+ .|..+|..+|.+++.+.+..+++++++||+.|||+...+- +.... .
T Consensus 134 --------------~~~~~------------~Y~~~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~-~~~~~--~ 184 (307)
T d1eq2a_ 134 --------------EKPLN------------VYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHK-GSMAS--V 184 (307)
T ss_dssp --------------CCCSS------------HHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGG-GGGSC--H
T ss_pred --------------ccccc------------ccccccchhhhhccccccccccccccccceeEeecccccc-ccccc--c
Confidence 01111 2444567778887777777899999999999999765321 11111 0
Q ss_pred ccceeeeecccee-eeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhcc
Q 042694 342 MDPIILYYGKGQL-TGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSA 420 (554)
Q Consensus 342 ~~~i~~~~~~G~~-~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~ 420 (554)
...+...+..|.. ..+.+++...+++++|+|++.++..+..... ..+||++++ ++.+++|+++.+.+..++
T Consensus 185 ~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~------~~~~~~~~~--~~~si~~i~~~i~~~~~~ 256 (307)
T d1eq2a_ 185 AFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV------SGIFNLGTG--RAESFQAVADATLAYHKK 256 (307)
T ss_dssp HHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC------CEEEEESCS--CCBCHHHHHHHC------
T ss_pred ccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhcc------ccccccccc--cchhHHHHHHHHHHhcCC
Confidence 1111112222322 2234667778999999999999988776532 369999998 789999999998876554
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.5e-19 Score=168.46 Aligned_cols=192 Identities=13% Similarity=0.109 Sum_probs=131.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.+++|+|||||||+|++++++||+++++| .++.+.. . ..+ .....+++++.||+.++ +++..
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V---~~~~R~~-~----~~~----~~~~~~~~~~~gD~~d~------~~l~~ 63 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEV---TVLVRDS-S----RLP----SEGPRPAHVVVGDVLQA------ADVDK 63 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEE---EEEESCG-G----GSC----SSSCCCSEEEESCTTSH------HHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEE---EEEEcCh-h----hcc----cccccccccccccccch------hhHHH
Confidence 36899999999999999999999998755 3332210 0 111 11345788999999998 88998
Q ss_pred HhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccc
Q 042694 189 IAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENF 268 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~ 268 (554)
.++++|+|||+++......+ ...+..++++++++|++ .++++||++||++++.+... +
T Consensus 64 al~~~d~vi~~~g~~~~~~~----~~~~~~~~~~l~~aa~~-~~v~r~i~~ss~~~~~~~~~------~----------- 121 (205)
T d1hdoa_ 64 TVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKA-HGVDKVVACTSAFLLWDPTK------V----------- 121 (205)
T ss_dssp HHTTCSEEEECCCCTTCCSC----CCHHHHHHHHHHHHHHH-HTCCEEEEECCGGGTSCTTC------S-----------
T ss_pred HhcCCCEEEEEeccCCchhh----hhhhHHHHHHHHHHHHh-cCCCeEEEEeeeeccCCCcc------c-----------
Confidence 89999999999987543322 24567899999999998 48999999999887665321 0
Q ss_pred cccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeee
Q 042694 269 VSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILY 348 (554)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~ 348 (554)
+.. ...+ ...+..+|...+..|++++|+||+.+++... .+.
T Consensus 122 --------~~~-----~~~~----------~~~~~~~e~~l~~~~~~~tiirp~~~~~~~~---~~~------------- 162 (205)
T d1hdoa_ 122 --------PPR-----LQAV----------TDDHIRMHKVLRESGLKYVAVMPPHIGDQPL---TGA------------- 162 (205)
T ss_dssp --------CGG-----GHHH----------HHHHHHHHHHHHHTCSEEEEECCSEEECCCC---CSC-------------
T ss_pred --------ccc-----cccc----------chHHHHHHHHHHhcCCceEEEecceecCCCC---ccc-------------
Confidence 000 0111 1122333444455799999999999976321 110
Q ss_pred eccceeeeeecCCCcccccchhhHHHHHHHHHHHHhc
Q 042694 349 YGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHG 385 (554)
Q Consensus 349 ~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~ 385 (554)
. .+..+++....+|+++|+|++++.++..+.
T Consensus 163 -----~-~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~ 193 (205)
T d1hdoa_ 163 -----Y-TVTLDGRGPSRVISKHDLGHFMLRCLTTDE 193 (205)
T ss_dssp -----C-EEESSSCSSCSEEEHHHHHHHHHHTTSCST
T ss_pred -----E-EEeeCCCCCCCcCCHHHHHHHHHHHhCCCC
Confidence 0 112344555678999999999998876543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.81 E-value=7.1e-20 Score=171.51 Aligned_cols=189 Identities=16% Similarity=0.144 Sum_probs=123.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
.|+|||||||||+|++|+++|+++++.+ +|+++.+.. .. ..+++....+|+. +....+
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~-~v~~~~r~~-------~~------~~~~~~~~~~d~~--------~~~~~~ 59 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLA-KVIAPARKA-------LA------EHPRLDNPVGPLA--------ELLPQL 59 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCC-EEECCBSSC-------CC------CCTTEECCBSCHH--------HHGGGC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeE-EEEEEeCCc-------hh------hcccccccccchh--------hhhhcc
Confidence 4899999999999999999999987644 666654321 11 1234433333432 223344
Q ss_pred hcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccc
Q 042694 190 AKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENF 268 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~ 268 (554)
...+|+||||+|.... ..........|+.++.+++++|++ .++++|+|+||..+++...
T Consensus 60 ~~~~d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~v~~~i~~Ss~~~~~~~~------------------- 119 (212)
T d2a35a1 60 DGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALE-MGARHYLVVSALGADAKSS------------------- 119 (212)
T ss_dssp CSCCSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHH-TTCCEEEEECCTTCCTTCS-------------------
T ss_pred ccchheeeeeeeeeccccccccccccchhhhhhhccccccc-ccccccccccccccccccc-------------------
Confidence 4578999999987643 334568899999999999999999 5999999999987754321
Q ss_pred cccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCc-EEEEccceeeecccCCccccccCCCCccceee
Q 042694 269 VSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIP-VVIIRPSVIESTCKEPFSGWMEGNRMMDPIIL 347 (554)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp-~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~ 347 (554)
. .+..+|..+|..+...+++ ++|+||+.|||+...+..... ...++
T Consensus 120 -----------~----------------~y~~~K~~~E~~l~~~~~~~~~I~Rp~~v~G~~~~~~~~~~----~~~~~-- 166 (212)
T d2a35a1 120 -----------I----------------FYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEFRLAEI----LAAPI-- 166 (212)
T ss_dssp -----------S----------------HHHHHHHHHHHHHTTSCCSEEEEEECCSEESTTSCEEGGGG----TTCCC--
T ss_pred -----------c----------------chhHHHHHHhhhccccccccceeeCCcceeCCcccccHHHH----HHHHH--
Confidence 0 0122344455555445665 999999999997654211111 01111
Q ss_pred eeccceeeeeecCCCcccccchhhHHHHHHHHHHHH
Q 042694 348 YYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQ 383 (554)
Q Consensus 348 ~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~ 383 (554)
.+.. ......|+++|+|++++.++..
T Consensus 167 ------~~~~----~~~~~~i~v~DvA~ai~~~~~~ 192 (212)
T d2a35a1 167 ------ARIL----PGKYHGIEACDLARALWRLALE 192 (212)
T ss_dssp ------C--------CHHHHHHHHHHHHHHHHHHTC
T ss_pred ------hhcc----CCCCcEEEHHHHHHHHHHHHcC
Confidence 0111 1223469999999999988754
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.79 E-value=1.7e-19 Score=177.19 Aligned_cols=234 Identities=18% Similarity=0.180 Sum_probs=147.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
|+|||||||||||++|++.|++.+. ++.++.. .. .+.+|+.++ +.++.++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~----~v~~~~~--------~~------------~~~~Dl~~~------~~~~~~i 50 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN----LIALDVH--------SK------------EFCGDFSNP------KGVAETV 50 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE----EEEECTT--------CS------------SSCCCTTCH------HHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC----EEEEECC--------Cc------------cccCcCCCH------HHHHHHH
Confidence 5799999999999999999988663 3333321 00 145788876 7777766
Q ss_pred c--CccEEEEcCCCCCc---hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCccc
Q 042694 191 K--EVDVIVNSAANTTF---DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAK 265 (554)
Q Consensus 191 ~--~vdiViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~ 265 (554)
+ ++|+|||+||.... ...+......|+.++.+++++|++. + .+++++||+.+++... +.++.|..+.
T Consensus 51 ~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~~~ss~~~~~~~~----~~~~~E~~~~-- 122 (298)
T d1n2sa_ 51 RKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-G-AWVVHYSTDYVFPGTG----DIPWQETDAT-- 122 (298)
T ss_dssp HHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-T-CEEEEEEEGGGSCCCT----TCCBCTTSCC--
T ss_pred HHcCCCEEEEecccccccccccCccccccccccccccchhhhhcc-c-cccccccccccccCCC----CCCCcccccc--
Confidence 5 67999999998765 3466788999999999999999874 3 5789999998877642 2222222211
Q ss_pred ccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccce
Q 042694 266 ENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPI 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i 345 (554)
.+...+ ..++..+|...........++|++..++........++..
T Consensus 123 -----------~p~~~y----------------~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 168 (298)
T d1n2sa_ 123 -----------SPLNVY----------------GKTKLAGEKALQDNCPKHLIFRTSWVYAGKGNNFAKTMLR------- 168 (298)
T ss_dssp -----------CCSSHH----------------HHHHHHHHHHHHHHCSSEEEEEECSEECSSSCCHHHHHHH-------
T ss_pred -----------CCCchH----------------hhhhhhhhhhHHhhhcccccccccceeeccCCccchhhhh-------
Confidence 111222 2223333333322234456666666655333222222111
Q ss_pred eeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCCC
Q 042694 346 ILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASPC 423 (554)
Q Consensus 346 ~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p~ 423 (554)
.......+. ..+....++++++|+++++..++..... ......+||++++ ..+++.++++.+.+..+....
T Consensus 169 -~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~i~~~~~-~~~~~~~~n~~~~--~~~~~~~~~~~i~~~~~~~~~ 239 (298)
T d1n2sa_ 169 -LAKERQTLS---VINDQYGAPTGAELLADCTAHAIRVALN-KPEVAGLYHLVAG--GTTTWHDYAALVFDEARKAGI 239 (298)
T ss_dssp -HHHHCSEEE---EECSCEECCEEHHHHHHHHHHHHHHHHH-CGGGCEEEECCCB--SCEEHHHHHHHHHHHHHHHTC
T ss_pred -hhcccceee---cccceeecccccchHHHHHHHHHhhhhc-cccccccccccCC--CceecHHHHHHHHhhhhccCc
Confidence 000111111 2244567889999999998877654322 1223589999998 789999999999887766443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.74 E-value=5.9e-17 Score=163.22 Aligned_cols=235 Identities=12% Similarity=0.000 Sum_probs=152.4
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+.|+|+|||||||+|++|+++|++++++| ++. .++..-....... ...+++++.||+.++ .+.++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V-~~l-~R~~~~~~~~~~~-------~~~~v~~~~gD~~d~-----~~~~~~ 67 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHV-RAQ-VHSLKGLIAEELQ-------AIPNVTLFQGPLLNN-----VPLMDT 67 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCE-EEE-ESCSCSHHHHHHH-------TSTTEEEEESCCTTC-----HHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeE-EEE-ECCcchhhhhhhc-------ccCCCEEEEeeCCCc-----HHHHHH
Confidence 35799999999999999999999999876 332 2321111111111 235789999999987 356778
Q ss_pred HhcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccccceeeccccCCCCCcccccc
Q 042694 189 IAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEKPFCMGDSIAKENF 268 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~~~~i~E~~~~~~~~~~~~~~ 268 (554)
+...++++++...... ..|+..+.+++++|++. +++++++.||.........
T Consensus 68 a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~aa~~a-gv~~~v~~Ss~~~~~~~~~------------------ 119 (350)
T d1xgka_ 68 LFEGAHLAFINTTSQA---------GDEIAIGKDLADAAKRA-GTIQHYIYSSMPDHSLYGP------------------ 119 (350)
T ss_dssp HHTTCSEEEECCCSTT---------SCHHHHHHHHHHHHHHH-SCCSEEEEEECCCGGGTSS------------------
T ss_pred HhcCCceEEeeccccc---------chhhhhhhHHHHHHHHh-CCCceEEEeeccccccCCc------------------
Confidence 8899999998765422 23566788999999985 7888888888644332110
Q ss_pred cccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCccccccCCCCccceeee
Q 042694 269 VSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWMEGNRMMDPIILY 348 (554)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~~~~~~~~i~~~ 348 (554)
....+++.+|...+.+....+++++++||+..++....+...... ...
T Consensus 120 ------------------------~~~~~~~~~k~~~~~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~~--------~~~ 167 (350)
T d1xgka_ 120 ------------------------WPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLFQ--------MEL 167 (350)
T ss_dssp ------------------------CCCCTTTHHHHHHHHHHHTSSSCEEEEEECEEGGGCBSSSCSSCB--------EEE
T ss_pred ------------------------ccchhhhhhHHHHHHHHHhhccCceeeeeceeecccccccccccc--------ccc
Confidence 011112233444455555568999999999988754322111110 011
Q ss_pred eccceee-eeecCCCcccccchh-hHHHHHHHHHHHHhcccCCCCCeEEEeeCCCCCcccHHHHHHHHHhHhccCC
Q 042694 349 YGKGQLT-GFLVDPNGILDVVPA-DMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQDLARLLHEHYSASP 422 (554)
Q Consensus 349 ~~~G~~~-~~~~~~~~~~d~vpV-D~va~aii~~~~~~~~~~~~~~~vyn~~~~~~~~it~~e~~~~~~~~~~~~p 422 (554)
...|... ..+.+++....++.+ +|++.++..++..... ...+++|+++++ .+|+.|+++.+.+.+|+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~--~~~G~~~~~~g~---~~T~~eia~~l~~~~G~~v 238 (350)
T d1xgka_ 168 MPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQ--KWNGHRIALTFE---TLSPVQVCAAFSRALNRRV 238 (350)
T ss_dssp CTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHH--HHTTCEEEECSE---EECHHHHHHHHHHHHTSCE
T ss_pred cccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChh--hcCCeEEEEeCC---cCCHHHHHHHHHHHHCCcc
Confidence 1222221 233456667777765 8999998887755321 113579999875 6899999999999999863
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=9.3e-12 Score=117.69 Aligned_cols=214 Identities=12% Similarity=0.088 Sum_probs=137.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.++++|++.|. +|++.+. +..+.+.++ ...++.++++|++++ ++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dv~~~------~~ 66 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGA---KVVFGDILDEEGKAMAAE--------LADAARYVHLDVTQP------AQ 66 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH--------TGGGEEEEECCTTCH------HH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHH--------hhCcceEEEeecCCH------HH
Confidence 5799999999999999999999999886 4555443 222333332 235788899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~ 248 (554)
.+.+++ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. + .+-.++|++||.......
T Consensus 67 v~~~~~~~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~ 146 (244)
T d1nffa_ 67 WKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT 146 (244)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccccc
Confidence 655543 79999999997653 357889999999999999886643 2 234589999997654321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. ....|...+..+ ..+++.++.+... .|+.+..+-||.|-.+.
T Consensus 147 ~----------------------------~~~~Y~asKaal--------~~ltk~lA~el~~-~gIrVN~I~PG~i~T~~ 189 (244)
T d1nffa_ 147 V----------------------------ACHGYTATKFAV--------RGLTKSTALELGP-SGIRVNSIHPGLVKTPM 189 (244)
T ss_dssp T----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECCBCSGG
T ss_pred c----------------------------cccchhhHHHHH--------HHHHHHHHHHhcc-cCEEEEEEeeCCccChh
Confidence 1 111122222211 1355566555443 48999999999885433
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.+ +...... .. | .--+...+|+|+++..++.... .--.++++.+.++
T Consensus 190 ~~----~~~~~~~-----------~~------p--l~R~~~p~diA~~v~fL~s~~s--~~itG~~i~vDGG 236 (244)
T d1nffa_ 190 TD----WVPEDIF-----------QT------A--LGRAAEPVEVSNLVVYLASDES--SYSTGAEFVVDGG 236 (244)
T ss_dssp GT----TSCTTCS-----------CC------S--SSSCBCHHHHHHHHHHHHSGGG--TTCCSCEEEESTT
T ss_pred Hh----hhhHHHH-----------hc------c--ccCCCCHHHHHHHHHHHhChhh--CCCcCCEEEECCC
Confidence 22 2211000 00 0 0124567899999888775432 1234678888766
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.33 E-value=3.3e-11 Score=114.26 Aligned_cols=224 Identities=13% Similarity=0.064 Sum_probs=134.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||+++||||++-||+.+++.|++.|. +|++.+....+...+... ....++..+.+|++++ ++.+
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga---~V~~~~~~~~~~~~~~~~-----~~g~~~~~~~~Dvs~~------~~v~ 68 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEGA---DIAIADLVPAPEAEAAIR-----NLGRRVLTVKCDVSQP------GDVE 68 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCHHHHHHHH-----HTTCCEEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCchHHHHHHHH-----HcCCcEEEEEeeCCCH------HHHH
Confidence 6899999999999999999999999886 455444321122222111 1345889999999988 7766
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. | .+-.++|++||.......
T Consensus 69 ~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~-- 146 (247)
T d2ew8a1 69 AFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI-- 146 (247)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC--
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccC--
Confidence 6643 79999999997543 357889999999999999887753 2 234589999997653321
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
+....|...+..+ ..+++.++.+... .|+.+..+-||.|-.+..+
T Consensus 147 --------------------------~~~~~Y~asKaal--------~~ltk~lA~ela~-~gIrVN~I~PG~i~T~~~~ 191 (247)
T d2ew8a1 147 --------------------------EAYTHYISTKAAN--------IGFTRALASDLGK-DGITVNAIAPSLVRTATTE 191 (247)
T ss_dssp --------------------------SSCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECCC------
T ss_pred --------------------------cccccchhhhccH--------HHHHHHHHHHhcc-cCeEEEEEeeCCCCCcccc
Confidence 1111122222222 1355666655543 4899999999988543221
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. ... .... .... .....--+.-.+|+|++++.++.... .--.+++.++.++
T Consensus 192 ~~---~~~-----~~~~-----~~~~---~~~~l~r~~~pedvA~~v~fL~S~~s--~~itG~~i~vDGG 243 (247)
T d2ew8a1 192 AS---ALS-----AMFD-----VLPN---MLQAIPRLQVPLDLTGAAAFLASDDA--SFITGQTLAVDGG 243 (247)
T ss_dssp -------------------------C---TTSSSCSCCCTHHHHHHHHHHTSGGG--TTCCSCEEEESSS
T ss_pred cc---ccc-----hhHH-----HHHH---HhccCCCCCCHHHHHHHHHHHhCchh--cCCcCCeEEECCC
Confidence 10 000 0000 0000 00000113345899999887765432 1224678887765
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.31 E-value=3e-11 Score=114.94 Aligned_cols=220 Identities=14% Similarity=0.153 Sum_probs=136.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc-chhHH---HHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN-AELFK---CLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~-~~~~~---~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
++||+||||||++-||..++++|++.|.+| +.+.+ .+..+ .++... ...++.++..|++.+ .
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~v--ii~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~-----~ 68 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKN--FVILDRVENPTALAELKAIN-------PKVNITFHTYDVTVP-----V 68 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSE--EEEEESSCCHHHHHHHHHHC-------TTSEEEEEECCTTSC-----H
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEE--EEEECCcccHHHHHHHHhhC-------CCCCEEEEEeecCCC-----H
Confidence 579999999999999999999999988754 33322 22122 222222 235888999999865 2
Q ss_pred HHHHHHh-------cCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHH-cC-----CCceEEEEeeceecccccc
Q 042694 184 DLADVIA-------KEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQ-CN-----KLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 184 ~~~~~l~-------~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~-~~-----~~k~~v~vST~~v~~~~~~ 250 (554)
++.+.++ .++|++||+|+... .+.++...++|+.|+..+.+++.. +. ...++|++||.......
T Consensus 69 ~~~~~~~~~~~~~~g~iDilvnnAG~~~-~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~-- 145 (254)
T d1sbya1 69 AESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI-- 145 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHHHHHHHcCCCCEEEeCCCCCC-HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCC--
Confidence 3333332 37999999999764 577899999999999999988764 21 23469999887553221
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
+....|...+..+ ..+++.++.+... .|+.+..+-||.|..+..+
T Consensus 146 --------------------------~~~~~Y~asKaal--------~~~t~~la~el~~-~gIrVn~I~PG~v~T~~~~ 190 (254)
T d1sbya1 146 --------------------------HQVPVYSASKAAV--------VSFTNSLAKLAPI-TGVTAYSINPGITRTPLVH 190 (254)
T ss_dssp --------------------------TTSHHHHHHHHHH--------HHHHHHHHHHHHH-HSEEEEEEEECSEESHHHH
T ss_pred --------------------------CCCHHHHHHHHHH--------HHHHHHHHhhccc-cCeEEEEEEeCCCcCcccc
Confidence 1111122222222 1355556554433 4899999999999653211
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
....+.+. .. ..... .......+.++||++++.++.... .+.++.+.++
T Consensus 191 ~~~~~~~~----~~--------~~~~~----~~~~~~~~~e~va~~~~~~~~~~~-----tG~vi~vdgG 239 (254)
T d1sbya1 191 TFNSWLDV----EP--------RVAEL----LLSHPTQTSEQCGQNFVKAIEANK-----NGAIWKLDLG 239 (254)
T ss_dssp SCCCGGGS----CT--------THHHH----HTTSCCEEHHHHHHHHHHHHHHCC-----TTCEEEEETT
T ss_pred ccccchhH----HH--------HHHhc----cccCCCCCHHHHHHHHHHhhhCCC-----CCCEEEECCC
Confidence 11111110 00 00000 011235578999999888775422 3578988877
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=4.9e-11 Score=116.11 Aligned_cols=230 Identities=12% Similarity=0.184 Sum_probs=136.7
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++||+++||||++-||+.+++.|++.|. +|++.+. +..+...++...........++..+.+|++++ +
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga---~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~------~ 79 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS---NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNE------E 79 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCH------H
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCH------H
Confidence 37899999999999999999999999886 4555543 22222222211111112345899999999998 6
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
+.+.+++ .+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-..+|.+|+....+.
T Consensus 80 ~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~~~ 159 (297)
T d1yxma1 80 EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGF 159 (297)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTCC
T ss_pred HHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccccc
Confidence 6666543 79999999986542 3578899999999999999887532 13346777766432111
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
+....+...+..+ ..+++.++.+... .|+.+..+.||.|..+
T Consensus 160 -----------------------------~~~~~Y~asKaal--------~~ltk~lA~el~~-~gIrVN~I~PG~i~T~ 201 (297)
T d1yxma1 160 -----------------------------PLAVHSGAARAGV--------YNLTKSLALEWAC-SGIRINCVAPGVIYSQ 201 (297)
T ss_dssp -----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHTGG-GTEEEEEEEECSBCCT
T ss_pred -----------------------------cccccchhHHHHH--------HHHHHHHHHHhcc-cCceEEEeeeCcCcCc
Confidence 1111122112211 1355566555443 4899999999998543
Q ss_pred ccCC-ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEP-FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p-~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.... ...+.+. .. .......|. --+.-.+|+|++++-++..... --.+++..+.++
T Consensus 202 ~~~~~~~~~~~~------~~----~~~~~~~pl-----gR~g~pedvA~~v~fL~Sd~s~--~iTG~~i~VDGG 258 (297)
T d1yxma1 202 TAVENYGSWGQS------FF----EGSFQKIPA-----KRIGVPEEVSSVVCFLLSPAAS--FITGQSVDVDGG 258 (297)
T ss_dssp GGGTTSGGGGGG------GG----TTGGGGSTT-----SSCBCTHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred chhhhccccCHH------HH----HHHHhcCCC-----CCCcCHHHHHHHHHHHhCchhc--CcCCcEEEeCcC
Confidence 2111 1111000 00 001000000 1133468999999888754331 234688888776
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.30 E-value=4.4e-11 Score=113.62 Aligned_cols=223 Identities=14% Similarity=0.125 Sum_probs=137.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.++++|++.|. +|++.+. +..+.+.+... ...++.++.+|++++ ++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~------~~ 68 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA---KVMITGRHSDVGEKAAKSVG------TPDQIQFFQHDSSDE------DG 68 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHC------CTTTEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhC------CCCcEEEEEccCCCH------HH
Confidence 6899999999999999999999999886 4454443 33334443332 235789999999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cC--CC-ceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CN--KL-KLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~--~~-k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. |. +. .++|++||......
T Consensus 69 v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~ 148 (251)
T d1zk4a1 69 WTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG 148 (251)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceecc
Confidence 665543 79999999987542 357889999999999999988753 32 22 37899998754322
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhh-hhhcCCCcEEEEccceeee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGL-GLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~-~~~~~glp~~I~Rp~~V~g 326 (554)
. +....|...+..+ ..+++.++.+ .....|+.+..+-||.|-.
T Consensus 149 ~----------------------------~~~~~Y~asKaal--------~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T 192 (251)
T d1zk4a1 149 D----------------------------PSLGAYNASKGAV--------RIMSKSAALDCALKDYDVRVNTVHPGYIKT 192 (251)
T ss_dssp C----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHHHTTCSEEEEEEEECCBCC
T ss_pred C----------------------------CCchhHHHHHHHH--------hcchHHHHHHHhcCCCcEEEEEEeCCCCCC
Confidence 1 1111122222211 1244555433 2335689999999999854
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+..+..++- ..... ..... |- --+.-.+|+|+++..++.... .--.++++++.++
T Consensus 193 ~~~~~~~~~-------~~~~~--~~~~~------pl--~R~~~pedvA~~v~fL~S~~s--~~itG~~i~vDGG 247 (251)
T d1zk4a1 193 PLVDDLPGA-------EEAMS--QRTKT------PM--GHIGEPNDIAYICVYLASNES--KFATGSEFVVDGG 247 (251)
T ss_dssp HHHHTSTTH-------HHHHT--STTTC------TT--SSCBCHHHHHHHHHHHHSGGG--TTCCSCEEEESTT
T ss_pred hhHHhcCCH-------HHHHH--HHhCC------CC--CCCcCHHHHHHHHHHHhCchh--CCCcCcEEEECcc
Confidence 322111110 00000 00000 00 114456899999888775433 1234678888765
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=1.8e-11 Score=115.81 Aligned_cols=219 Identities=16% Similarity=0.137 Sum_probs=137.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.+++.|++.|.+ |++.++ +..+.+.++. ..+...+.+|++++ ++
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~---Vv~~~r~~~~l~~~~~~~--------~~~~~~~~~Dv~~~------~~ 64 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAK---VIGTATSENGAQAISDYL--------GANGKGLMLNVTDP------AS 64 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESSHHHHHHHHHHH--------GGGEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHh--------CCCCcEEEEEecCH------HH
Confidence 57999999999999999999999998874 444432 2333333332 34678899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|++||.......
T Consensus 65 v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~ 144 (243)
T d1q7ba_ 65 IESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGN 144 (243)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC
T ss_pred hhhhhhhhhcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCC
Confidence 665553 79999999987543 3578899999999999999888532 234689999997653321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
. ....|...+..+ ..+++.++.+... .|+.+..+.||.|-.+.
T Consensus 145 ~----------------------------~~~~Y~asKaal--------~~lt~~lA~ela~-~gIrVN~I~PG~i~T~~ 187 (243)
T d1q7ba_ 145 G----------------------------GQANYAAAKAGL--------IGFSKSLAREVAS-RGITVNVVAPGFIETDM 187 (243)
T ss_dssp T----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCHH
T ss_pred C----------------------------CCHHHHHHHHHH--------HHHHHHHHHHhCc-cCeEEEEEecceEechh
Confidence 1 111122222221 1345555555443 48999999999884322
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.+.. .+ ... ....... | .--+...+|+|+++..++..... --.+++.++.++
T Consensus 188 ~~~~---~~------~~~----~~~~~~~---p--l~R~~~pedvA~~v~fL~S~~s~--~itGq~i~vdGG 239 (243)
T d1q7ba_ 188 TRAL---SD------DQR----AGILAQV---P--AGRLGGAQEIANAVAFLASDEAA--YITGETLHVNGG 239 (243)
T ss_dssp HHTS---CH------HHH----HHHHTTC---T--TSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hhhh---hh------hHH----HHHHhcC---C--CCCCCCHHHHHHHHHHHhCchhc--CCcCCeEEECCC
Confidence 1110 00 000 0000000 0 01244578999998887754331 234678888766
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.28 E-value=3.4e-11 Score=114.49 Aligned_cols=222 Identities=14% Similarity=0.026 Sum_probs=137.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||+++||||++=||+.++++|++.|. +|++.+... +++.+...+ ...++.++.+|++++ ++.+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~-~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~v~ 67 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGA---RVVLADVLD-EEGAATARE-----LGDAARYQHLDVTIE------EDWQ 67 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH-HHHHHHHHT-----TGGGEEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCH-HHHHHHHHH-----hCCceEEEEcccCCH------HHHH
Confidence 5899999999999999999999999886 455554321 233322211 235788999999987 7776
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|++||........
T Consensus 68 ~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~- 146 (254)
T d1hdca_ 68 RVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLA- 146 (254)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-
T ss_pred HHHHHHHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhccccc-
Confidence 6653 79999999997543 3578899999999999998887532 2456999999976533211
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
....|...+..+ ..+++.++.+... .|+.+..+-||.|-.+...
T Consensus 147 ---------------------------~~~~Y~asKaal--------~~lt~~lA~e~a~-~gIrVN~I~PG~v~T~~~~ 190 (254)
T d1hdca_ 147 ---------------------------LTSSYGASKWGV--------RGLSKLAAVELGT-DRIRVNSVHPGMTYTPMTA 190 (254)
T ss_dssp ---------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCHHHH
T ss_pred ---------------------------chhhHHHHHHHH--------HHHHHHHHHHhCC-CceEEEEeeeCcccCccch
Confidence 111122222222 1355566555443 4899999999988432110
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..... .. ....... |-.++ -...+|||++++-++..... --.++++++.++
T Consensus 191 ---~~~~~--~~--------~~~~~~~---pl~R~-g~~PedvA~~v~fL~S~~a~--~itG~~i~vDGG 241 (254)
T d1hdca_ 191 ---ETGIR--QG--------EGNYPNT---PMGRV-GNEPGEIAGAVVKLLSDTSS--YVTGAELAVDGG 241 (254)
T ss_dssp ---HHTCC--CS--------TTSCTTS---TTSSC-B-CHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred ---hcCHH--HH--------HHHHhCC---CCCCC-CCCHHHHHHHHHHHhchhhC--CCCCceEEeCCC
Confidence 00000 00 0000000 00000 12348899998887754331 234688988776
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.7e-11 Score=115.89 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=92.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.+||+|+||||++=||+.++++|++.|. +|++.+.. ..+.+.++... ...++..+.+|++++ +.
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G~---~V~l~~r~~~~l~~~~~~~~~-----~~~~~~~~~~Dvs~~------~~ 70 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLKS---KLVLWDINKHGLEETAAKCKG-----LGAKVHTFVVDCSNR------ED 70 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeeCCCH------HH
Confidence 6799999999999999999999999886 55655432 23333333211 345889999999998 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~ 246 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. | .+-.++|++||.....
T Consensus 71 v~~~~~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~ 148 (244)
T d1yb1a_ 71 IYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV 148 (244)
T ss_dssp HHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC
T ss_pred HHHHHHHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC
Confidence 665543 79999999998643 246779999999999999887753 2 2345899999986543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.27 E-value=1e-10 Score=112.30 Aligned_cols=227 Identities=15% Similarity=0.093 Sum_probs=139.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.+++.|++.|. +|++.+. ...+.+.++.. ...++.++.+|++++ ++
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga---~V~i~~r~~~~~~~~~~~l~------~~~~~~~~~~Dv~~~------~~ 68 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA---KVVIADIADDHGQKVCNNIG------SPDVISFVHCDVTKD------ED 68 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHC------CTTTEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhc------CCCceEEEEccCCCH------HH
Confidence 6899999999999999999999999886 4555543 33344444432 234678899999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc---------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF---------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~ 246 (554)
.+.+++ .+|++||+||.... .+.++..+++|+.|+..+.+.+.. | .+-.++|++||.....
T Consensus 69 v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~ 148 (268)
T d2bgka1 69 VRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFT 148 (268)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTC
T ss_pred HHHHHHHHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccc
Confidence 666653 79999999986431 246889999999999999988754 3 2345888898875533
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
... +....|...+..+ ..+++.++.+... .|+.+..+-||.|-.
T Consensus 149 ~~~---------------------------~~~~~Y~asKaal--------~~lt~~lA~el~~-~gIrVN~I~PG~i~T 192 (268)
T d2bgka1 149 AGE---------------------------GVSHVYTATKHAV--------LGLTTSLCTELGE-YGIRVNCVSPYIVAS 192 (268)
T ss_dssp CCT---------------------------TSCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEESCCSC
T ss_pred ccc---------------------------ccccccchhHHHH--------HhCHHHHHHHhCh-hCeEEEecCCCCccC
Confidence 211 0000122222221 1345555554443 489999999998854
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+......+... .-...... .. ..+ .--+...+|+|++++-++.... .--.++++.+.++
T Consensus 193 ~~~~~~~~~~~------~~~~~~~~-~~----~~~--~gr~~~pedvA~~v~fL~S~~s--~~itGq~i~VDGG 251 (268)
T d2bgka1 193 PLLTDVFGVDS------SRVEELAH-QA----ANL--KGTLLRAEDVADAVAYLAGDES--KYVSGLNLVIDGG 251 (268)
T ss_dssp CCCTTSSSCCH------HHHHHHHH-HT----CSS--CSCCCCHHHHHHHHHHHHSGGG--TTCCSCEEEESTT
T ss_pred hHHhhhhcCCH------HHHHHHHH-hc----ccc--CCCCcCHHHHHHHHHHHhChhh--CCccCceEEECcC
Confidence 32211111000 00000000 00 000 0124567999999988775432 1234688888776
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.26 E-value=7.6e-11 Score=111.93 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=90.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.+++.|++.|. +|++.+. +..+...++.. +....++..+.+|++++ ++
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga---~V~i~~r~~~~~~~~~~~l~----~~~g~~~~~~~~Dv~~~------~~ 69 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC---SVVVASRNLEEASEAAQKLT----EKYGVETMAFRCDVSNY------EE 69 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH----HHHCCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH----HHhCCcEEEEEccCCCH------HH
Confidence 5799999999999999999999999886 4554442 22222222111 11345788999999987 76
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cC--CCceEEEEeecee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CN--KLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~--~~k~~v~vST~~v 244 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+.. |. +-.++|++||...
T Consensus 70 v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~ 145 (251)
T d1vl8a_ 70 VKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTV 145 (251)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGG
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchh
Confidence 666553 79999999997542 357889999999999999988754 32 3348999988543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=3e-11 Score=115.07 Aligned_cols=224 Identities=14% Similarity=0.115 Sum_probs=137.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.++++|++.|. +|++.+. +..+.+.++... ...++.++.+|++++ ++
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~~~~~~~~~~l~~-----~g~~~~~~~~Dvs~~------~~ 74 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINADAANHVVDEIQQ-----LGGQAFACRCDITSE------QE 74 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHH-----cCCcEEEEEccCCCH------HH
Confidence 6899999999999999999999999886 4555443 223333333211 235788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceeccccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. + .+-.++|++||........
T Consensus 75 ~~~~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~ 154 (255)
T d1fmca_ 75 LSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI 154 (255)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT
T ss_pred HHHHHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhcccc
Confidence 665543 79999999997532 357889999999999999887643 2 2344788999875533211
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeeccc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCK 329 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~ 329 (554)
....|...+..+. .+++.++.+... .|+.+..+-||.|-.+..
T Consensus 155 ----------------------------~~~~Y~asKaal~--------~lt~~lA~el~~-~gIrVN~I~PG~i~T~~~ 197 (255)
T d1fmca_ 155 ----------------------------NMTSYASSKAAAS--------HLVRNMAFDLGE-KNIRVNGIAPGAILTDAL 197 (255)
T ss_dssp ----------------------------TCHHHHHHHHHHH--------HHHHHHHHHHHT-TTEEEEEEEECSBCSHHH
T ss_pred ----------------------------ccccchhHHHHHH--------HHHHHHHHHhCc-cCeEEEEeeeCcCcChHh
Confidence 1111222222221 345555555443 489999999998843211
Q ss_pred CCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCCC
Q 042694 330 EPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSV 401 (554)
Q Consensus 330 ~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~~ 401 (554)
. .+.. .... ....... |- --+.-.+|+|+++.-++.... .--.+++..+.++.
T Consensus 198 ~---~~~~-----~e~~----~~~~~~~---pl--~R~g~pedvA~~v~fL~S~~s--~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 198 K---SVIT-----PEIE----QKMLQHT---PI--RRLGQPQDIANAALFLCSPAA--SWVSGQILTVSGGG 250 (255)
T ss_dssp H---TTCC-----HHHH----HHHHHTC---SS--CSCBCHHHHHHHHHHHHSGGG--TTCCSCEEEESTTS
T ss_pred h---ccCC-----HHHH----HHHHhcC---CC--CCCcCHHHHHHHHHHHhCchh--cCCcCCEEEECcCc
Confidence 1 1000 0000 0000000 00 013346899999888775432 12346888888873
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.26 E-value=5.2e-11 Score=113.52 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=113.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||+++||||++-||+.++++|++.|. +|++.+.. .+.+++...+ ...++.++.+|++++ ++.+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~-~~~l~~~~~~-----~~~~~~~~~~Dvt~~------~~v~ 67 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGA---RVAIADIN-LEAARATAAE-----IGPAACAIALDVTDQ------ASID 67 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTE---EEEEEESC-HHHHHHHHHH-----HCTTEEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECC-HHHHHHHHHH-----hCCceEEEEeeCCCH------HHHH
Confidence 5799999999999999999999999885 45555432 1233322211 245788999999988 7766
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeeceeccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~~v~~~~~ 249 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+.. + ++--++|++||.......
T Consensus 68 ~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~- 146 (256)
T d1k2wa_ 68 RCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGE- 146 (256)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcccc-
Confidence 6653 79999999997553 357889999999999999886542 2 234589999997653321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
+....|...+..+ ..+++.++.+... .|+.+..+-||.|-.
T Consensus 147 ---------------------------~~~~~Y~asKaal--------~~lt~~lA~el~~-~gIrVN~V~PG~i~T 187 (256)
T d1k2wa_ 147 ---------------------------ALVGVYCATKAAV--------ISLTQSAGLNLIR-HGINVNAIAPGVVDG 187 (256)
T ss_dssp ---------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECCBCC
T ss_pred ---------------------------ccccchhhhhhHH--------HHHHHHHHHHhcc-cCeEEEEEecCCCCc
Confidence 1111122222211 1355556555443 489999999998754
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=6.6e-11 Score=111.70 Aligned_cols=220 Identities=16% Similarity=0.168 Sum_probs=135.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.++++|++.|. +|++.++ +..+.+.++ ..++.++.+|++++ +.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~~~l~~~~~~---------~~~~~~~~~Dv~~~------~~ 64 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA---KVVAVTRTNSDLVSLAKE---------CPGIEPVCVDLGDW------DA 64 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH---------STTCEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHh---------cCCCeEEEEeCCCH------HH
Confidence 5799999999999999999999999886 4554443 223333332 23577899999987 67
Q ss_pred HHHHhc---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeeceecccccce
Q 042694 186 ADVIAK---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTAYVNGQRRGK 251 (554)
Q Consensus 186 ~~~l~~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~~v~~~~~~~ 251 (554)
.+.+.+ ++|++||+||.... .+.++..+++|+.|+..+.+.+.. + ++-.++|++||.......
T Consensus 65 v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~--- 141 (242)
T d1cyda_ 65 TEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF--- 141 (242)
T ss_dssp HHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC---
T ss_pred HHHHHHHcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccC---
Confidence 777765 79999999997543 357889999999999999887653 1 233589999987553321
Q ss_pred eeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC
Q 042694 252 VMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP 331 (554)
Q Consensus 252 i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p 331 (554)
+....|...+..+. .+++.++.+... .|+.+..+-||.|-.+..+.
T Consensus 142 -------------------------~~~~~Y~asKaal~--------~lt~~lA~e~~~-~gIrvN~I~PG~i~T~~~~~ 187 (242)
T d1cyda_ 142 -------------------------PNLITYSSTKGAMT--------MLTKAMAMELGP-HKIRVNSVNPTVVLTDMGKK 187 (242)
T ss_dssp -------------------------TTBHHHHHHHHHHH--------HHHHHHHHHHGG-GTEEEEEEEECCBTTHHHHH
T ss_pred -------------------------CccccccchHHHHH--------HHHHHHHHHhCc-cCeecccCCCCCccCHHHHh
Confidence 11111222222221 345555554443 48999999999884322110
Q ss_pred ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 332 FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 332 ~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
... . ..... ...... | .--+.-.+|++++++-++.... .--.++++.+.++
T Consensus 188 ~~~---~----~~~~~----~~~~~~---p--l~R~~~peeva~~v~fL~S~~s--~~itG~~i~vDGG 238 (242)
T d1cyda_ 188 VSA---D----PEFAR----KLKERH---P--LRKFAEVEDVVNSILFLLSDRS--ASTSGGGILVDAG 238 (242)
T ss_dssp HTC---C----HHHHH----HHHHHS---T--TSSCBCHHHHHHHHHHHHSGGG--TTCCSSEEEESTT
T ss_pred hcC---C----HHHHH----HHHhcC---C--CCCCcCHHHHHHHHHHHhCchh--cCcCCceEEeCcc
Confidence 000 0 00000 000000 0 0123456899999888775432 1234678887665
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=6.9e-11 Score=111.75 Aligned_cols=220 Identities=17% Similarity=0.186 Sum_probs=137.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||++|||||++-||+.++++|++.|. +|++.++. ..+.+.++ ...+..+.+|++++ +.
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~---~V~~~~r~~~~l~~~~~~---------~~~~~~~~~Dv~d~------~~ 66 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA---RVVAVSRTQADLDSLVRE---------CPGIEPVCVDLGDW------EA 66 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH---------STTCEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCHHHHHHHHHh---------cCCCeEEEEeCCCH------HH
Confidence 6899999999999999999999999886 45555432 22333332 23567899999987 77
Q ss_pred HHHHhc---CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeeceecccccce
Q 042694 186 ADVIAK---EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTAYVNGQRRGK 251 (554)
Q Consensus 186 ~~~l~~---~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~~v~~~~~~~ 251 (554)
.+.+.+ ++|++||+|+.... .+.++..+++|+.|+..+.+.+.. + ++-.++|++||........
T Consensus 67 v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~-- 144 (244)
T d1pr9a_ 67 TERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT-- 144 (244)
T ss_dssp HHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT--
T ss_pred HHHHHHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccccccc--
Confidence 777765 79999999998653 357889999999999998887653 2 2346899999976543211
Q ss_pred eeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC
Q 042694 252 VMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP 331 (554)
Q Consensus 252 i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p 331 (554)
....|...+..+ ..+++.++.+... .|+.+..+.||.|-.+..+.
T Consensus 145 --------------------------~~~~Y~asKaal--------~~lt~~lA~el~~-~gIrvN~I~PG~v~T~~~~~ 189 (244)
T d1pr9a_ 145 --------------------------NHSVYCSTKGAL--------DMLTKVMALELGP-HKIRVNAVNPTVVMTSMGQA 189 (244)
T ss_dssp --------------------------TBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECCBCSHHHHT
T ss_pred --------------------------chhhhhhhHHHH--------HHHHHHHHHHhCC-CcEEEEEEeeCcCcChHHhh
Confidence 111122222211 1355566554443 48999999999885432111
Q ss_pred ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 332 FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 332 ~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
. ..+...... ..... |- --+...+|+|++++.++.... .--.+++.++.++
T Consensus 190 ~---~~~~~~~~~--------~~~~~---pl--~R~~~peevA~~v~fL~S~~a--~~itG~~i~vDGG 240 (244)
T d1pr9a_ 190 T---WSDPHKAKT--------MLNRI---PL--GKFAEVEHVVNAILFLLSDRS--GMTTGSTLPVEGG 240 (244)
T ss_dssp T---SCSHHHHHH--------HHTTC---TT--CSCBCHHHHHHHHHHHHSGGG--TTCCSCEEEESTT
T ss_pred h---ccChHHHHH--------HHhcC---CC--CCCcCHHHHHHHHHHHhCchh--CCcCCcEEEECcc
Confidence 0 000000000 00000 00 114456899999888775433 1234578877665
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=4.7e-11 Score=113.24 Aligned_cols=163 Identities=16% Similarity=0.141 Sum_probs=112.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.+++.|++.|. +|++.+. +..+.+.++ ..++..+.+|++++ ++
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~~~~~~~~~~---------~~~~~~~~~Dvs~~------~~ 65 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA---RVVICDKDESGGRALEQE---------LPGAVFILCDVTQE------DD 65 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHH---------CTTEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHh---------cCCCeEEEccCCCH------HH
Confidence 6899999999999999999999999886 4555543 223333332 24578899999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHHc-C-CCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQC-N-KLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~-~-~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ .+|++||+|+... + .+.++..+++|+.|+..+.+.+... . +--++|++||.......
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~ 145 (250)
T d1ydea1 66 VKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQ 145 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccccc
Confidence 766653 7999999999542 2 2468899999999999998887542 1 12489999987653321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
+..-.|...+..+ ..+++.++.+... .|+.+..+.||.|-
T Consensus 146 ----------------------------~~~~~Y~asKaal--------~~lt~~lA~e~a~-~gIrVN~I~PG~i~ 185 (250)
T d1ydea1 146 ----------------------------AQAVPYVATKGAV--------TAMTKALALDESP-YGVRVNCISPGNIW 185 (250)
T ss_dssp ----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECSBC
T ss_pred ----------------------------cCcchhHHHHhhH--------HHHHHHHHHHhcc-cCeEEEEEeeCCCC
Confidence 1111122222221 1355566555443 48999999999984
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.25 E-value=4.2e-11 Score=113.74 Aligned_cols=222 Identities=15% Similarity=0.149 Sum_probs=137.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
+++|.++||||++-||+.+++.|++.|. +|++.++ +..+.+.++... ...++..+.+|++++ ++
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga---~V~~~~r~~~~l~~~~~~l~~-----~g~~~~~~~~Dvt~~------~~ 73 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVS---HVICISRTQKSCDSVVDEIKS-----FGYESSGYAGDVSKK------EE 73 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSS---EEEEEESSHHHHHHHHHHHHT-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 5789999999999999999999999886 4554443 333333333321 235788999999988 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. + .+-.++|++||.......
T Consensus 74 v~~~~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~ 153 (251)
T d2c07a1 74 ISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN 153 (251)
T ss_dssp HHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC
T ss_pred HHHHHHHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCC
Confidence 666653 79999999997543 357889999999999999887653 2 244689999997653221
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecc
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTC 328 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~ 328 (554)
+....|...+..+. .+++.++.+... .|+.+..+.||.|-.+.
T Consensus 154 ----------------------------~~~~~Y~asKaal~--------~ltr~lA~el~~-~gIrVN~V~PG~v~T~~ 196 (251)
T d2c07a1 154 ----------------------------VGQANYSSSKAGVI--------GFTKSLAKELAS-RNITVNAIAPGFISSDM 196 (251)
T ss_dssp ----------------------------TTCHHHHHHHHHHH--------HHHHHHHHHHGG-GTEEEEEEEECSBCC--
T ss_pred ----------------------------CCCHHHHHHHHHHH--------HHHHHHHHHhhh-hCeEEEEEccCCEeccc
Confidence 11111222222221 355566555443 48999999999985432
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.+..+ +. .. ....... |- --+...+|++++++.++..... --.+++..+.++
T Consensus 197 ~~~~~---~~------~~----~~~~~~~---pl--~R~~~pedvA~~v~fL~S~~s~--~itG~~i~vDGG 248 (251)
T d2c07a1 197 TDKIS---EQ------IK----KNIISNI---PA--GRMGTPEEVANLACFLSSDKSG--YINGRVFVIDGG 248 (251)
T ss_dssp ---CC---HH------HH----HHHHTTC---TT--SSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred ccccC---HH------HH----HHHHhcC---CC--CCCcCHHHHHHHHHHHhCchhC--CCcCcEEEECCC
Confidence 21110 00 00 0000000 00 1144568899998887754331 224578887665
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.24 E-value=3.5e-11 Score=115.04 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=114.8
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-----hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-----ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-----~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
|-.+++|+||||+|-||+.++++|+++|.. +|+++.+ +..+.+.++... ...++.++.+|++++
T Consensus 6 ~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~--~vvl~~R~~~~~~~~~~~~~~l~~-----~g~~v~~~~~Dv~d~---- 74 (259)
T d2fr1a1 6 WKPTGTVLVTGGTGGVGGQIARWLARRGAP--HLLLVSRSGPDADGAGELVAELEA-----LGARTTVAACDVTDR---- 74 (259)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCS--EEEEEESSGGGSTTHHHHHHHHHH-----TTCEEEEEECCTTCH----
T ss_pred cCCcCEEEEECCCcHHHHHHHHHHHHCCCC--EEEEEeCCccCHHHHHHHHHHHHh-----ccccccccccccchH----
Confidence 445679999999999999999999998863 4554421 122222222111 235799999999998
Q ss_pred CHHHHHHHhc------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEeeceecccc
Q 042694 182 EEDLADVIAK------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 182 s~~~~~~l~~------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST~~v~~~~ 248 (554)
++.+.+.+ .+|.|+|+|+.... .+.++....+|+.|+.++.++... .+..++|++||....-..
T Consensus 75 --~~~~~~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~-~~~~~iv~~SS~a~~~g~ 151 (259)
T d2fr1a1 75 --ESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRE-LDLTAFVLFSSFASAFGA 151 (259)
T ss_dssp --HHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT-SCCSEEEEEEEHHHHTCC
T ss_pred --HHHHHhhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhc-cCCceEeeecchhhccCC
Confidence 77777664 48999999997653 245778889999999999998776 466789999998664332
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.+ .. .|..+|...+.+++... ..|+++..+.||.+.+
T Consensus 152 ~~----------------------------~~------------~YaAaka~l~~la~~~~-~~Gi~v~~I~pg~~~~ 188 (259)
T d2fr1a1 152 PG----------------------------LG------------GYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAG 188 (259)
T ss_dssp TT----------------------------CT------------TTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC-
T ss_pred cc----------------------------cH------------HHHHHHHhHHHHHHHHH-hCCCCEEECCCCcccC
Confidence 11 00 23334555556665543 3589999999998754
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.24 E-value=5.4e-11 Score=113.67 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=114.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.+++.|++.|. +|++.+. +..+.+.+.... ...++.++.+|++++ ++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~~~l~~~~~~~~~-----~g~~~~~~~~Dv~~~------~~ 68 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGT---AIALLDMNREALEKAEASVRE-----KGVEARSYVCDVTSE------EA 68 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHT-----TTSCEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------HH
Confidence 6899999999999999999999999886 4555543 333444433321 235788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|++||+||... + .+.++..+++|+.|+..+.+.+.. | .+--++|++||......
T Consensus 69 v~~~~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~ 148 (260)
T d1zema1 69 VIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKG 148 (260)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSC
T ss_pred HHHHHHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccC
Confidence 665543 7999999999643 2 246889999999999999888753 2 24458999999765332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. ....|...+..+ ..+++.++.+... .|+.+..+-||.|-.
T Consensus 149 ~~----------------------------~~~~Y~asKaal--------~~ltk~lA~el~~-~gIrVN~I~PG~v~T 190 (260)
T d1zema1 149 PP----------------------------NMAAYGTSKGAI--------IALTETAALDLAP-YNIRVNAISPGYMGP 190 (260)
T ss_dssp CT----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCS
T ss_pred Cc----------------------------chHHHHHHHHHH--------HHHHHHHHHHhhh-hCCEEEEeccCcccC
Confidence 11 111122222211 1355566555443 489999999999844
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.24 E-value=7.2e-11 Score=112.64 Aligned_cols=168 Identities=16% Similarity=0.169 Sum_probs=113.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.++++|++.|. +|++.+. +..+.+.++... ...++..+.+|++++ ++
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~~~l~~~~~~~~~-----~g~~~~~~~~Dv~~~------~~ 71 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA---SVYTCSRNQKELNDCLTQWRS-----KGFKVEASVCDLSSR------SE 71 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCEEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCCceEEEeeCCCH------HH
Confidence 5799999999999999999999999886 4555443 223333332211 245788899999987 65
Q ss_pred HHHHh-------c-CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIA-------K-EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~-------~-~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+. . .+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|++||......
T Consensus 72 v~~~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~ 151 (259)
T d2ae2a_ 72 RQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALA 151 (259)
T ss_dssp HHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccc
Confidence 55443 2 58999999997543 3578899999999999998877542 23458999999755322
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
. +....|...+..+ ..+++.++.+... .|+.+..+-||.|-.
T Consensus 152 ~----------------------------~~~~~Y~asKaal--------~~lt~~lA~el~~-~gIrVN~I~PG~i~T 193 (259)
T d2ae2a_ 152 V----------------------------PYEAVYGATKGAM--------DQLTRCLAFEWAK-DNIRVNGVGPGVIAT 193 (259)
T ss_dssp C----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHTGG-GTEEEEEEEECSBCS
T ss_pred c----------------------------ccccchHHHHHHH--------HHHHHHHHHHhCc-CceEEEEeeeCcccC
Confidence 1 1111122222211 1355666555443 489999999998843
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.24 E-value=1e-10 Score=111.48 Aligned_cols=170 Identities=14% Similarity=0.102 Sum_probs=114.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.+++.|++.|. +|++.+. +..+.+.++... .....++..+.+|++++ ++
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~~~l~~~~~~~~~---~~~~~~~~~~~~Dvt~~------~~ 69 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA---KLSLVDVSSEGLEASKAAVLE---TAPDAEVLTTVADVSDE------AQ 69 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH---HCTTCCEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh---hCCCCeEEEEeccCCCH------HH
Confidence 5799999999999999999999999886 4555543 222222222111 11235788999999998 77
Q ss_pred HHHHhc-------CccEEEEcCCCCC----c----hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceeccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTT----F----DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|++||+||... + .+.++..+++|+.|+..+.+.+.. + .+-.++|++||......
T Consensus 70 v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~ 149 (258)
T d1iy8a_ 70 VEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRG 149 (258)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSB
T ss_pred HHHHHHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccC
Confidence 666643 7999999998542 2 247889999999999999987743 2 24458999999765332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
. +....|...+..+ ..+++.++.+... .|+.+..+-||.|..
T Consensus 150 ~----------------------------~~~~~Y~asKaal--------~~lt~~lA~el~~-~gIrVN~i~PG~v~T 191 (258)
T d1iy8a_ 150 I----------------------------GNQSGYAAAKHGV--------VGLTRNSAVEYGR-YGIRINAIAPGAIWT 191 (258)
T ss_dssp C----------------------------SSBHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECSBCS
T ss_pred C----------------------------CCchHHHHHHHHH--------HHHHHHHHHHhCc-cCceEEEEeeCcccC
Confidence 1 1111122222221 1355666655543 489999999999853
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.23 E-value=6.3e-11 Score=113.14 Aligned_cols=224 Identities=13% Similarity=0.058 Sum_probs=137.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch---hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE---LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~---~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
++||+++||||++-||+.++++|++.|. +|++.++. ..+.+.+.... ...++.++.+|++++ +
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~---~Vv~~~r~~~~~~~~~~~~~~~-----~g~~~~~~~~Dvt~~------~ 70 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKA---KVVVNYRSKEDEANSVLEEIKK-----VGGEAIAVKGDVTVE------S 70 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHHH-----TTCEEEEEECCTTSH------H
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCcHHHHHHHHHHHHh-----cCCcEEEEEccCCCH------H
Confidence 6899999999999999999999999886 44544322 22333332211 335788999999988 6
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CC-CceEEEEeeceecc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NK-LKLFVQVSTAYVNG 246 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~-~k~~v~vST~~v~~ 246 (554)
+.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. | .+ -..++++||.....
T Consensus 71 ~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~ 150 (261)
T d1geea_ 71 DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI 150 (261)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc
Confidence 6666653 79999999997543 357889999999999998887753 2 12 23588899875432
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. +....|...+..+ ..+++.++.+... .|+.+..+-||.|-.
T Consensus 151 ~~----------------------------~~~~~Y~asKaal--------~~lt~~lA~e~~~-~gIrVN~I~PG~v~T 193 (261)
T d1geea_ 151 PW----------------------------PLFVHYAASKGGM--------KLMTETLALEYAP-KGIRVNNIGPGAINT 193 (261)
T ss_dssp CC----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECSBCS
T ss_pred cC----------------------------ccccccccCCccc--------hhhHHHHHHHhhh-hCcEEEEEeeCcCcC
Confidence 21 1111122222222 1355666655544 489999999998843
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+... ..... .... ....... | .--+...+|+|++++-++.... .--.++++.+.++
T Consensus 194 ~~~~---~~~~~----~~~~----~~~~~~~---p--l~R~~~pediA~~v~fL~S~~s--~~itG~~i~vDGG 249 (261)
T d1geea_ 194 PINA---EKFAD----PEQR----ADVESMI---P--MGYIGEPEEIAAVAAWLASSEA--SYVTGITLFADGG 249 (261)
T ss_dssp GGGH---HHHHS----HHHH----HHHHTTC---T--TSSCBCHHHHHHHHHHHHSGGG--TTCCSCEEEESTT
T ss_pred HhHh---hhcCC----HHHH----HHHHhcC---C--CCCCCCHHHHHHHHHHHhCchh--cCCcCCeEEECCC
Confidence 2210 00000 0000 0000000 0 0113456899999988775433 1234678888776
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.23 E-value=1.2e-10 Score=110.23 Aligned_cols=164 Identities=16% Similarity=0.094 Sum_probs=110.6
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++||++|||||++-||+.+++.|++.|. +|++.+. +.-..+.+.. +...+++|++++ ++
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~---~V~~~~~~~~~~~~~~~~----------~~~~~~~Dv~~~------~~ 62 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGA---LVALCDLRPEGKEVAEAI----------GGAFFQVDLEDE------RE 62 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTTHHHHHHHH----------TCEEEECCTTCH------HH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHc----------CCeEEEEeCCCH------HH
Confidence 36899999999999999999999999886 4454432 2111222211 235688999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+.. | .+-.++|++||.......
T Consensus 63 v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~ 142 (248)
T d2d1ya1 63 RVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE 142 (248)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC
T ss_pred HHHHHHHHHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccc
Confidence 665543 79999999997543 357889999999999999988854 2 234589999987654321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
. ....|...+..+ ..+++.++.+... .|+.+..+-||.|-.
T Consensus 143 ~----------------------------~~~~Y~asKaal--------~~ltk~lA~el~~-~gIrVN~I~PG~v~T 183 (248)
T d2d1ya1 143 Q----------------------------ENAAYNASKGGL--------VNLTRSLALDLAP-LRIRVNAVAPGAIAT 183 (248)
T ss_dssp T----------------------------TBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCC
T ss_pred c----------------------------ccchhHHHHHHH--------HHHHHHHHHHhhh-hCcEEEEEeeCCCCC
Confidence 1 111122222211 1355566555543 489999999998843
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.9e-11 Score=114.28 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=90.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+||++|||||++-||+.++++|++.|. +|++.+. +..+...++..+. ....++.++.+|++++ ++.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga---~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~~~~Dv~~~------~~v 69 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA---KVALVDWNLEAGVQCKAALHEQ---FEPQKTLFIQCDVADQ------QQL 69 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTTT---SCGGGEEEEECCTTSH------HHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHh---cCCCcEEEEEeecCCH------HHH
Confidence 689999999999999999999999886 4555543 2233333333221 1235789999999988 666
Q ss_pred HHHhc-------CccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHH-cCC-----CceEEEEeecee
Q 042694 187 DVIAK-------EVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQ-CNK-----LKLFVQVSTAYV 244 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~-~~~-----~k~~v~vST~~v 244 (554)
+.+.+ .+|++||+|+... .++++...++|+.++..+.+++.. +.+ -.++|++||...
T Consensus 70 ~~~~~~~~~~~G~iDilVnnAg~~~-~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~ 139 (254)
T d2gdza1 70 RDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAG 139 (254)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred HHHHHHHHHHcCCcCeecccccccc-cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhh
Confidence 66553 7999999999754 467889999999999888888754 211 235999998755
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.22 E-value=8.9e-11 Score=111.90 Aligned_cols=228 Identities=13% Similarity=0.097 Sum_probs=135.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+|||||||+-||+.++++|++.|.+ |++.++ +..+.+.+.... ...++.++.+|++++ ++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~---V~i~~r~~~~l~~~~~~~~~-----~~~~~~~~~~D~s~~------~~ 69 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGAR---VYTCSRNEKELDECLEIWRE-----KGLNVEGSVCDLLSR------TE 69 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHh-----cCCCceEEEeecCCH------HH
Confidence 58999999999999999999999999874 444432 222333222211 345678899999988 66
Q ss_pred HHHHhc--------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIAK--------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~~--------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+.+ .+|+++|+|+.... .+.++..+++|+.++..+.+++... ++..++|++||......
T Consensus 70 ~~~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~ 149 (258)
T d1ae1a_ 70 RDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA 149 (258)
T ss_dssp HHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccc
Confidence 554432 48999999997652 4578999999999999998877532 35569999998766432
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeec
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIEST 327 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~ 327 (554)
.. ....+...+..+ ..+++.++.+... .|+.+..+.||.|..+
T Consensus 150 ~~----------------------------~~~~Y~~sK~al--------~~lt~~lA~el~~-~gIrvN~I~PG~i~T~ 192 (258)
T d1ae1a_ 150 LP----------------------------SVSLYSASKGAI--------NQMTKSLACEWAK-DNIRVNSVAPGVILTP 192 (258)
T ss_dssp CT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBC--
T ss_pred cc----------------------------cchhHHHHHHHH--------HHHHHHHHHhcCc-CcEEEEEEeeCcccCc
Confidence 11 111122222211 1345555544443 4899999999998543
Q ss_pred ccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 328 CKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 328 ~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+ .+............ ..... .|- --+...+|+|+++.-++..... --.++.+.+.++
T Consensus 193 ~~~---~~~~~~~~~~~~~~----~~~~~---~pl--gR~~~pediA~~v~fL~S~~s~--~itG~~i~vDGG 251 (258)
T d1ae1a_ 193 LVE---TAIKKNPHQKEEID----NFIVK---TPM--GRAGKPQEVSALIAFLCFPAAS--YITGQIIWADGG 251 (258)
T ss_dssp --------------CHHHHH----HHHHH---STT--CSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred chh---hhhhhhhhhHHHHH----HHHhc---CCC--CCCcCHHHHHHHHHHHhChhhC--CCcCcEEEeCCC
Confidence 221 11111000000000 00000 011 1256788999998888754331 123567777654
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=5.9e-11 Score=111.64 Aligned_cols=213 Identities=14% Similarity=0.155 Sum_probs=132.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||+++||||++-||+.++++|++.|. +|++.++.. ...+++..+.+|++++ ++.+
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~Ga---~V~~~~r~~--------------~~~~~~~~~~~Dv~~~------~~v~ 61 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADGH---KVAVTHRGS--------------GAPKGLFGVEVDVTDS------DAVD 61 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSS--------------CCCTTSEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCc--------------chhcCceEEEEecCCH------HHHH
Confidence 7899999999999999999999999886 455554320 1345678899999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+.. + .+-.++|++||........
T Consensus 62 ~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~- 140 (237)
T d1uzma1 62 RAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIG- 140 (237)
T ss_dssp HHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------
T ss_pred HHHHHHHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCc-
Confidence 5543 79999999997542 357889999999999888876543 2 3445899999976543211
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
....|...+..+. .+++.++.+... .|+.+..+.||.|-.+..+
T Consensus 141 ---------------------------~~~~Y~asKaal~--------~lt~~lA~e~~~-~gIrVN~I~PG~v~T~~~~ 184 (237)
T d1uzma1 141 ---------------------------NQANYAASKAGVI--------GMARSIARELSK-ANVTANVVAPGYIDTDMTR 184 (237)
T ss_dssp ---------------------------CCHHHHHHHHHHH--------HHHHHHHHHHGG-GTEEEEEEEECSBCCHHHH
T ss_pred ---------------------------ccHHHHHHHHHHH--------HHHHHHHhhhhc-CCceeeeeeeCcCCChhhh
Confidence 1111222222111 345555555443 4899999999998543221
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+.... ....... |- --+.-.+|+|++++.++..... --.++++.+.++
T Consensus 185 ~~~~~~~-------------~~~~~~~---pl--~R~~~pedvA~~v~fL~S~~s~--~itG~~i~vdGG 234 (237)
T d1uzma1 185 ALDERIQ-------------QGALQFI---PA--KRVGTPAEVAGVVSFLASEDAS--YISGAVIPVDGG 234 (237)
T ss_dssp HSCHHHH-------------HHHGGGC---TT--CSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred ccCHHHH-------------HHHHhcC---CC--CCCcCHHHHHHHHHHHhCchhc--CCcCCeEEECCC
Confidence 1111000 0000000 00 1134568999998887754321 224678887665
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.22 E-value=9.9e-11 Score=110.47 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=133.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||+++||||++-||+.++++|++.|. +|++.+.. .+++.+... .-+...+.+|++++ ++.+
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~---~V~~~~r~-~~~l~~~~~-------~~~~~~~~~Dv~~~------~~v~ 65 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGA---RLVACDIE-EGPLREAAE-------AVGAHPVVMDVADP------ASVE 65 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESC-HHHHHHHHH-------TTTCEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECC-HHHHHHHHH-------HcCCeEEEEecCCH------HHHH
Confidence 5789999999999999999999999886 45555432 233333221 12456789999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-C--CCceEEEEeeceecccccc
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-N--KLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~--~~k~~v~vST~~v~~~~~~ 250 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+... . +-..++.+||....+.
T Consensus 66 ~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~~--- 142 (242)
T d1ulsa_ 66 RGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN--- 142 (242)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC---
T ss_pred HHHHHHHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccCC---
Confidence 6543 79999999997542 3578899999999999999887642 2 3345666666432221
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccC
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKE 330 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~ 330 (554)
+....|...+..+ ..+++.++.+... .|+.+..+.||.|-.+...
T Consensus 143 --------------------------~~~~~Y~asKaal--------~~ltk~lA~ela~-~gIrVN~I~PG~v~T~~~~ 187 (242)
T d1ulsa_ 143 --------------------------LGQANYAASMAGV--------VGLTRTLALELGR-WGIRVNTLAPGFIETRMTA 187 (242)
T ss_dssp --------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCTTTS
T ss_pred --------------------------CCCcchHHHHHHH--------HHHHHHHHHHHhh-hCcEEEEEeeCcccChhhh
Confidence 1111122222222 1355666555544 4899999999998543222
Q ss_pred CccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 331 PFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 331 p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+.... .. ..... | .--+.-.+|+++++..++..... --.+++..+.++
T Consensus 188 ~~~~~~~-----~~--------~~~~~---p--l~R~~~pedia~~v~fL~S~~s~--~itG~~i~vDGG 237 (242)
T d1ulsa_ 188 KVPEKVR-----EK--------AIAAT---P--LGRAGKPLEVAYAALFLLSDESS--FITGQVLFVDGG 237 (242)
T ss_dssp SSCHHHH-----HH--------HHHTC---T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cCCHHHH-----HH--------HHhcC---C--CCCCCCHHHHHHHHHHHhchhhC--CCCCcEEEECCC
Confidence 1111000 00 00000 0 01133468899998887754321 224678888766
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.22 E-value=6e-11 Score=113.17 Aligned_cols=166 Identities=15% Similarity=0.099 Sum_probs=112.5
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+||.+|||||++-||+.++++|++.|.+ |++.++ +..+.+.++... ...++.++.+|++++ ++.
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~---V~i~~r~~~~l~~~~~~l~~-----~g~~~~~~~~Dvs~~------~~v 66 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLR---VFVCARGEEGLRTTLKELRE-----AGVEADGRTCDVRSV------PEI 66 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------HHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeecCCH------HHH
Confidence 4788999999999999999999998864 454443 223333333211 235788999999988 666
Q ss_pred HHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-----CCCceEEEEeeceeccc
Q 042694 187 DVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-----NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 187 ~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-----~~~k~~v~vST~~v~~~ 247 (554)
+.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++|.+||......
T Consensus 67 ~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~ 146 (257)
T d2rhca1 67 EALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQG 146 (257)
T ss_dssp HHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccc
Confidence 66653 69999999997543 3578899999999999999988641 13357888888755332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
.. ....|...+..+ ..+++.++.+... .|+.+..+-||.|-
T Consensus 147 ~~----------------------------~~~~Y~asKaal--------~~ltk~lA~el~~-~gIrVN~I~PG~i~ 187 (257)
T d2rhca1 147 VV----------------------------HAAPYSASKHGV--------VGFTKALGLELAR-TGITVNAVCPGFVE 187 (257)
T ss_dssp CT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHTTT-SEEEEEEEEECSBC
T ss_pred cc----------------------------cchhHHHHHHHH--------HHHHHHHHHHhhh-hCcEEEEEeeCCCC
Confidence 11 111122222222 1355566555443 47999999999884
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.22 E-value=2.8e-10 Score=107.15 Aligned_cols=166 Identities=10% Similarity=0.133 Sum_probs=110.7
Q ss_pred EEEEecccccccHHHHHHHHhhCCCcc----EEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVG----KIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~----~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.||||||++-||+.++++|.+.|.++. .|++.++ ...+.+.++... ...++.++.+|++++ ++
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~-----~g~~~~~~~~Dvt~~------~~ 71 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA-----EGALTDTITADISDM------AD 71 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT-----TTCEEEEEECCTTSH------HH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEecCCCH------HH
Confidence 489999999999999999999987521 2343332 223333333221 235788999999998 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQR 248 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~ 248 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|++||.......
T Consensus 72 v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~ 151 (240)
T d2bd0a1 72 VRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF 151 (240)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCC
Confidence 665543 69999999997543 3578899999999999988887542 234589999987553321
Q ss_pred cceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 249 RGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 249 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
+....|...+..+ ..+++.++.+... .|+.+..+-||.|-
T Consensus 152 ----------------------------~~~~~Y~asK~al--------~~lt~~la~el~~-~gIrvn~i~PG~v~ 191 (240)
T d2bd0a1 152 ----------------------------RHSSIYCMSKFGQ--------RGLVETMRLYARK-CNVRITDVQPGAVY 191 (240)
T ss_dssp ----------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHTT-TTEEEEEEEECCBC
T ss_pred ----------------------------CCChHHHHHHHHH--------HHHHHHHHHHhCc-CCeEEEEeeeCccc
Confidence 1111122222211 1355666555443 48999999999884
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.21 E-value=9.6e-11 Score=111.92 Aligned_cols=169 Identities=14% Similarity=0.087 Sum_probs=114.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
++||++|||||++-||+.++++|++.|. +|++.+. ...+.+.+... .....++.++.+|++++ +
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga---~V~~~~r~~~~~~~~~~~~~~----~~~g~~~~~~~~Dv~~~------~ 68 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA---DIVLNGFGDAAEIEKVRAGLA----AQHGVKVLYDGADLSKG------E 68 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEECCSCHHHHHHHHHHHH----HHHTSCEEEECCCTTSH------H
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCcHHHHHHHHHHHH----HhcCCcEEEEECCCCCH------H
Confidence 5799999999999999999999999886 4555543 22333333221 11245788999999998 7
Q ss_pred HHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 185 LADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 185 ~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
+.+.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+... .+--++|++||......
T Consensus 69 ~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~ 148 (260)
T d1x1ta1 69 AVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVA 148 (260)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceec
Confidence 7766653 79999999997542 3578899999999999888876532 23458999999765332
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. ....|...+..+ ..+++.++.+... .|+.+..+.||.|-.
T Consensus 149 ~~----------------------------~~~~Y~asKaal--------~~lt~~lA~el~~-~gIrVN~I~PG~i~T 190 (260)
T d1x1ta1 149 SA----------------------------NKSAYVAAKHGV--------VGFTKVTALETAG-QGITANAICPGWVRT 190 (260)
T ss_dssp CT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHHTT-TTEEEEEEEECCBCC
T ss_pred cC----------------------------CcchhhhhhhhH--------HHhHHHHHHHhch-hCcEEEEEecCCCCC
Confidence 11 111122222211 1355566555443 589999999998843
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2e-10 Score=109.45 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=92.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+||||||++-||++++++|++.|. +|++.++ ...+.+.++... .....++.++.+|++++ ++
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~---~Vv~~~r~~~~l~~~~~~l~~---~~~~~~~~~~~~Dls~~------~~ 75 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL---KVVGCARTVGNIEELAAECKS---AGYPGTLIPYRCDLSNE------ED 75 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH---TTCSSEEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh---cCCCceEEEEEccCCCH------HH
Confidence 7899999999999999999999999886 4554443 223333332211 11235889999999987 76
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH----cC-CCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ----CN-KLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~----~~-~~k~~v~vST~~v~ 245 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.+ .+ +-.++|++||.+..
T Consensus 76 v~~~v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~ 154 (257)
T d1xg5a_ 76 ILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH 154 (257)
T ss_dssp HHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGT
T ss_pred HHHHHHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhc
Confidence 666543 79999999997643 467899999999999888777642 11 23589999997653
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.20 E-value=1.2e-10 Score=110.95 Aligned_cols=168 Identities=17% Similarity=0.156 Sum_probs=107.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.+++.|++.|. +|++.++ ...+.+.++... ...++..+.+|++++ ++
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga---~V~~~~r~~~~l~~~~~~~~~-----~~~~~~~~~~Dv~~~------~~ 71 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA---VIHTCARNEYELNECLSKWQK-----KGFQVTGSVCDASLR------PE 71 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh-----cCCceEEEeccCCCH------HH
Confidence 4899999999999999999999999886 4554432 223333332211 234789999999987 55
Q ss_pred HHHHh--------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceeccc
Q 042694 186 ADVIA--------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQ 247 (554)
Q Consensus 186 ~~~l~--------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~ 247 (554)
.+.+. ..+|+++|+||.... .+.++..+++|+.|+..+.+.+... .+--++|++||......
T Consensus 72 v~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~ 151 (259)
T d1xq1a_ 72 REKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVS 151 (259)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-------
T ss_pred HHHHHHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccccc
Confidence 54443 258999999997543 3578899999999999998877542 24458999999765322
Q ss_pred ccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 248 RRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 248 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
. +....|...+..+. .+++.++.+... .|+.+..+-||.|-.
T Consensus 152 ~----------------------------~~~~~Y~asKaal~--------~lt~~lA~e~~~-~gIrVN~V~PG~i~T 193 (259)
T d1xq1a_ 152 A----------------------------SVGSIYSATKGALN--------QLARNLACEWAS-DGIRANAVAPAVIAT 193 (259)
T ss_dssp -------------------------------CCHHHHHHHHHH--------HHHHHHHHHHGG-GTCEEEEEECCSCC-
T ss_pred c----------------------------cccccccccccchh--------hhhHHHHHHhcc-cCeEEEEeccCcccC
Confidence 1 11112322222221 345566555444 489999999998844
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.20 E-value=1.3e-10 Score=110.38 Aligned_cols=225 Identities=12% Similarity=0.027 Sum_probs=137.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.+++.|++.|. +|++.+. +..+.+.++. ..+..++.+|++++ ++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~~~~~~~~~~~~~~--------~~~~~~~~~Dv~~~------~~ 66 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGA---KVAFSDINEAAGQQLAAEL--------GERSMFVRHDVSSE------AD 66 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHHH--------CTTEEEECCCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHh--------CCCeEEEEeecCCH------HH
Confidence 6899999999999999999999999886 4555543 2333343332 35778899999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cC-CCceEEEEeeceeccccc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CN-KLKLFVQVSTAYVNGQRR 249 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~-~~k~~v~vST~~v~~~~~ 249 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. |. +--++|++||.......
T Consensus 67 ~~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~- 145 (253)
T d1hxha_ 67 WTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPI- 145 (253)
T ss_dssp HHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCc-
Confidence 666553 79999999997543 357889999999999999888754 32 23589999997653321
Q ss_pred ceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhc-CCCcEEEEccceeeecc
Q 042694 250 GKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLER-GDIPVVIIRPSVIESTC 328 (554)
Q Consensus 250 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~-~glp~~I~Rp~~V~g~~ 328 (554)
+....|...+..+ ..+++.++.+...+ .++.+..+-||.|-.+.
T Consensus 146 ---------------------------~~~~~Y~asKaal--------~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~ 190 (253)
T d1hxha_ 146 ---------------------------EQYAGYSASKAAV--------SALTRAAALSCRKQGYAIRVNSIHPDGIYTPM 190 (253)
T ss_dssp ---------------------------TTBHHHHHHHHHH--------HHHHHHHHHHHHHHTCCEEEEEEEESEECCHH
T ss_pred ---------------------------cccccccchhHHH--------HHHHHHHHHHHhhcCCCEEEEEEeECCCcCHh
Confidence 1111122222211 13555555544433 46899999999985421
Q ss_pred cCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 329 KEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 329 ~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.. ...... ........ ..+ ..-.-.+...+|+|++++-++..... --.++++++.++
T Consensus 191 ~~---~~~~~~-~~~~~~~~----~~~-----~~~~gr~~~pedvA~~v~fL~S~~s~--~itG~~i~VDGG 247 (253)
T d1hxha_ 191 MQ---ASLPKG-VSKEMVLH----DPK-----LNRAGRAYMPERIAQLVLFLASDESS--VMSGSELHADNS 247 (253)
T ss_dssp HH---HHSCTT-CCHHHHBC----BTT-----TBTTCCEECHHHHHHHHHHHHSGGGT--TCCSCEEEESSS
T ss_pred HH---hhCcch-hhHHHHHh----Ccc-----ccccCCCCCHHHHHHHHHHHhChhhC--CCcCcEEEECcc
Confidence 10 000000 00000000 000 00001244568999999887754331 234678888665
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.18 E-value=2.3e-10 Score=110.18 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=87.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||+|+||||++-||+.++++|++.|. +|++.++. .+++.+...+ ...++..+.+|++++ ++.+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~-~~~l~~~~~~-----~~~~~~~~~~Dv~~~------~~~~ 67 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGA---KVAVLDKS-AERLAELETD-----HGDNVLGIVGDVRSL------EDQK 67 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESC-HHHHHHHHHH-----HGGGEEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECC-HHHHHHHHHH-----cCCCeeEEecccccH------HHHH
Confidence 4799999999999999999999999886 45555432 1233222111 235788999999987 6666
Q ss_pred HHhc-------CccEEEEcCCCCCc------------hhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeecee
Q 042694 188 VIAK-------EVDVIVNSAANTTF------------DERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTAYV 244 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~~v 244 (554)
.+.+ .+|++||+|+...+ ++.++..+++|+.|+..+.+.+... ++-.++|++||...
T Consensus 68 ~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~ 145 (276)
T d1bdba_ 68 QAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAG 145 (276)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGG
T ss_pred HHHHHHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechh
Confidence 5543 79999999996432 1247899999999999988887531 12247888887643
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.18 E-value=2e-10 Score=109.23 Aligned_cols=164 Identities=20% Similarity=0.146 Sum_probs=109.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|.++||||++-||+.++++|++.|.+ |++.+. +..+.+.++... ...++.++.+|++++ ++.+.
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~---V~~~~r~~~~l~~~~~~i~~-----~g~~~~~~~~Dv~~~------~~v~~ 67 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFA---VAIADYNDATAKAVASEINQ-----AGGHAVAVKVDVSDR------DQVFA 67 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTSH------HHHHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeeCCCH------HHHHH
Confidence 45699999999999999999998864 454433 223333332211 235788999999988 76666
Q ss_pred Hhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeeceecccccc
Q 042694 189 IAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTAYVNGQRRG 250 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~~v~~~~~~ 250 (554)
+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+.. + ++-.+++++||.......
T Consensus 68 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~-- 145 (255)
T d1gega_ 68 AVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN-- 145 (255)
T ss_dssp HHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccC--
Confidence 643 79999999997542 357889999999999999887643 2 234578999987543221
Q ss_pred eeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 251 KVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 251 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
+....|...+..+ ..+++.++.+... .|+.+..+-||.|-
T Consensus 146 --------------------------~~~~~Y~asKaal--------~~ltk~lA~el~~-~gIrVN~I~PG~i~ 185 (255)
T d1gega_ 146 --------------------------PELAVYSSSKFAV--------RGLTQTAARDLAP-LGITVNGYCPGIVK 185 (255)
T ss_dssp --------------------------TTBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBS
T ss_pred --------------------------cccccchhCHHHH--------HhhHHHHHHHhhh-hCcEEEEEecCccc
Confidence 1111122222221 1355566555443 48999999999884
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.13 E-value=3.6e-10 Score=108.66 Aligned_cols=171 Identities=16% Similarity=0.156 Sum_probs=111.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.++++|++.|. +|++.+. +..+.+.++.... .....++..+.+|++++ ++
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~~~l~~~~~~i~~~--~~~~~~~~~~~~Dv~~~------~~ 70 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA---QVTITGRNEDRLEETKQQILKA--GVPAEKINAVVADVTEA------SG 70 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHT--TCCGGGEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHc--CCCCcceEEEEeeCCCH------HH
Confidence 5799999999999999999999999886 4555543 2233333322110 01235789999999998 76
Q ss_pred HHHHhc-------CccEEEEcCCCCCc---------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecc
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF---------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNG 246 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~ 246 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-..++++||.....
T Consensus 71 v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~ 150 (274)
T d1xhla_ 71 QDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ 150 (274)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS
T ss_pred HHHHHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccc
Confidence 666553 78999999985321 2457899999999999998887542 2345677776643322
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. +....|...+..+ ..+++.++.+... .|+.+..+-||.|-.
T Consensus 151 ~~----------------------------~~~~~Y~asKaal--------~~ltk~lA~ela~-~gIrVN~I~PG~i~T 193 (274)
T d1xhla_ 151 AH----------------------------SGYPYYACAKAAL--------DQYTRCTAIDLIQ-HGVRVNSVSPGAVAT 193 (274)
T ss_dssp CC----------------------------TTSHHHHHHHHHH--------HHHHHHHHHHHGG-GTCEEEEEEECCBCS
T ss_pred cC----------------------------CCCceehhhhhHH--------HHHHHHHHHHHhH-hCCceeeeccCCCcC
Confidence 11 1111122222222 1355666655544 489999999999843
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.13 E-value=1.4e-10 Score=109.30 Aligned_cols=220 Identities=13% Similarity=0.109 Sum_probs=132.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||+++|||||+-||+.++++|++.|. +|++..+.. +++.+...+ ...++.++++|++++ ++.+
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~---~V~~~~r~~-~~~~~~~~~-----~~~~~~~~~~Dls~~------~~i~ 67 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGA---SLVAVDREE-RLLAEAVAA-----LEAEAIAVVADVSDP------KAVE 67 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH-HHHHHHHHT-----CCSSEEEEECCTTSH------HHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH-HHHHHHHHH-----cCCceEEEEecCCCH------HHHH
Confidence 6799999999999999999999999886 455444321 223322211 345788999999988 7766
Q ss_pred HHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHcC-CCceEEEEeeceeccccccee
Q 042694 188 VIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQCN-KLKLFVQVSTAYVNGQRRGKV 252 (554)
Q Consensus 188 ~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~-~~k~~v~vST~~v~~~~~~~i 252 (554)
.+++ ++|++||+|+.... .+.++..+++|+.++..+.+.+.... +-+.++.+||.+..... +
T Consensus 68 ~~~~~i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~-~-- 144 (241)
T d2a4ka1 68 AVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAF-G-- 144 (241)
T ss_dssp HHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHH-H--
T ss_pred HHHHHHHHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccccc-C--
Confidence 6543 79999999986532 34678999999999999999886543 33344444443221110 0
Q ss_pred eccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCc
Q 042694 253 MEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPF 332 (554)
Q Consensus 253 ~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~ 332 (554)
...|..+|.. -..+++.++.+... .|+.+..+-||.|-.+..+..
T Consensus 145 --------------------------------~~~Y~~sK~a--l~~lt~~lA~el~~-~gIrvN~I~PG~v~T~~~~~~ 189 (241)
T d2a4ka1 145 --------------------------------LAHYAAGKLG--VVGLARTLALELAR-KGVRVNVLLPGLIQTPMTAGL 189 (241)
T ss_dssp --------------------------------HHHHHHCSSH--HHHHHHHHHHHHTT-TTCEEEEEEECSBCCGGGTTS
T ss_pred --------------------------------ccccchhhHH--HHHHHHHHHHHHhH-hCCEEeeeccCcCCCHHHHhh
Confidence 0123322211 12345555555443 489999999999833221111
Q ss_pred cccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 333 SGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 333 ~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+. ....... ... |- --+.-.||+|+++..++..... --.+++..+.++
T Consensus 190 ~~---------~~~~~~~-~~~------p~--~r~~~p~dva~~v~fL~S~~s~--~itG~~i~vDGG 237 (241)
T d2a4ka1 190 PP---------WAWEQEV-GAS------PL--GRAGRPEEVAQAALFLLSEESA--YITGQALYVDGG 237 (241)
T ss_dssp CH---------HHHHHHH-HTS------TT--CSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred hH---------hHHHHHH-hCC------CC--CCCcCHHHHHHHHHHHhcchhC--CCcCceEEeCCC
Confidence 10 0000000 000 00 1244569999999888764331 123567777665
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.13 E-value=3.4e-10 Score=108.71 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=86.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.++++|++.|. +|++.+. +..+.+.++..+. .....++..+.+|++++ ++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~l~~r~~~~l~~~~~~l~~~--~~~~~~~~~~~~Dvs~~------~~ 71 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGA---NVTITGRSSERLEETRQIILKS--GVSEKQVNSVVADVTTE------DG 71 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTT--TCCGGGEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhc--CCCCCceEEEEccCCCH------HH
Confidence 6799999999999999999999999886 4555443 2333333332110 01234789999999998 76
Q ss_pred HHHHhc-------CccEEEEcCCCCCc--------h---hhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEee
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF--------D---ERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVST 241 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~--------~---~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST 241 (554)
.+.+.+ ++|++||+|+.... + +.++..+++|+.|+..+.+.+... ++-..+|.++|
T Consensus 72 v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S 147 (272)
T d1xkqa_ 72 QDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSS 147 (272)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccc
Confidence 666553 79999999987532 1 247888999999999999887542 12235555555
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.12 E-value=3.2e-10 Score=108.48 Aligned_cols=124 Identities=20% Similarity=0.220 Sum_probs=85.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||.++||||++-||+.++++|++.|. +|++.++ +..+.+.++... ......++.++.+|++++ ++
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga---~V~~~~r~~~~l~~~~~~l~~--~~~~~~~~~~~~~Dvt~~------~~ 71 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA---KVTITGRHAERLEETRQQILA--AGVSEQNVNSVVADVTTD------AG 71 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH--TTCCGGGEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh--cCCCcCceEEEEccCCCH------HH
Confidence 6899999999999999999999999886 4555443 223333332211 001234789999999988 66
Q ss_pred HHHHhc-------CccEEEEcCCCCC-----------chhhHHHHHHHhchHHHHHHHHHHHc--CCCceEEEEeec
Q 042694 186 ADVIAK-------EVDVIVNSAANTT-----------FDERYDIAIDINTRGPCRLMEFAKQC--NKLKLFVQVSTA 242 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~-----------~~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~v~vST~ 242 (554)
.+.+.+ .+|++||+|+... ..+.++..+++|+.|+..+.+.+..+ ++-..+|.++|.
T Consensus 72 v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~ 148 (264)
T d1spxa_ 72 QDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSI 148 (264)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCT
T ss_pred HHHHHHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeee
Confidence 666653 7999999998642 12468889999999999888887642 122366666664
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.12 E-value=2.2e-10 Score=108.20 Aligned_cols=163 Identities=16% Similarity=0.164 Sum_probs=110.9
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEE--cc-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFII--NA-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~--~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.|+||||++-||+.++++|++.|.+ |++. ++ ...+.+.+.... ...++.++.+|++++ ++.+.
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga~---V~i~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~Dv~~~------~~v~~ 68 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGCK---VLVNYARSAKAAEEVSKQIEA-----YGGQAITFGGDVSKE------ADVEA 68 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCHHHHHHHHHHHHH-----HTCEEEEEECCTTSH------HHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCCHHHHHHHHHHHHH-----cCCcEEEEeCCCCCH------HHHHH
Confidence 6899999999999999999998864 4433 22 233444333221 345788999999988 77666
Q ss_pred Hhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccccce
Q 042694 189 IAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQRRGK 251 (554)
Q Consensus 189 l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~~~~ 251 (554)
+.+ ++|++||+|+.... .+.++..+++|+.|+..+.+.+.. | .+--++|++||........
T Consensus 69 ~~~~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~-- 146 (244)
T d1edoa_ 69 MMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNI-- 146 (244)
T ss_dssp HHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT--
T ss_pred HHHHHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCC--
Confidence 543 79999999997543 357889999999999999888754 2 2446999999976533211
Q ss_pred eeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 252 VMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 252 i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
....|...+..+ ..+++.++.+... .|+.+..+-||.|-
T Consensus 147 --------------------------~~~~Y~asKaal--------~~ltk~lA~el~~-~gIrvN~I~PG~i~ 185 (244)
T d1edoa_ 147 --------------------------GQANYAAAKAGV--------IGFSKTAAREGAS-RNINVNVVCPGFIA 185 (244)
T ss_dssp --------------------------TCHHHHHHHHHH--------HHHHHHHHHHHHT-TTEEEEEEEECSBC
T ss_pred --------------------------CCHHHHHHHHHH--------HHChHHHHHHHhh-hCcEEEEEecceec
Confidence 111122222222 1355555555443 48999999999884
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.11 E-value=3.1e-10 Score=108.28 Aligned_cols=122 Identities=15% Similarity=0.199 Sum_probs=88.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+||||||||-||++++++|++.|.+| +++.++ +..+.+.+.... ...++..+.+|++++ ++
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~~V--vi~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~D~~~~------~~ 70 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGASV--VVNYGSSSKAAEEVVAELKK-----LGAQGVAIQADISKP------SE 70 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEE--EEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEE--EEEcCCChHHHHHHHHHHHH-----cCCCceEecCCCCCH------HH
Confidence 679999999999999999999999998754 222322 223444443321 345788999999987 66
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTA 242 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~ 242 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.+...+++.+.. +.+-.+.+.++|.
T Consensus 71 v~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~ 142 (259)
T d1ja9a_ 71 VVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI 142 (259)
T ss_dssp HHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred HHHHHHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccc
Confidence 655543 79999999997643 357889999999999999998865 3233455566554
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.09 E-value=6.1e-10 Score=106.20 Aligned_cols=125 Identities=13% Similarity=0.125 Sum_probs=88.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||++|||||++-||+.+++.|++.|. +|++.++ ...+.+.++.. .....++..+.+|++++ ++
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~~~~~~~~~~~~----~~~g~~~~~~~~Dv~~~------~~ 73 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA---NVAVIYRSAADAVEVTEKVG----KEFGVKTKAYQCDVSNT------DI 73 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCTTHHHHHHHHH----HHHTCCEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH----HHhCCceEEEEccCCCH------HH
Confidence 6899999999999999999999999886 4555432 22222222211 11245788999999998 77
Q ss_pred HHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c---CCCceEEEEeeceec
Q 042694 186 ADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C---NKLKLFVQVSTAYVN 245 (554)
Q Consensus 186 ~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~v~vST~~v~ 245 (554)
.+.+.+ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. + ..-..++.+|+....
T Consensus 74 v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~ 151 (260)
T d1h5qa_ 74 VTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQ 151 (260)
T ss_dssp HHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccc
Confidence 666653 79999999986532 357889999999999888877643 1 234456666665543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.09 E-value=9.1e-10 Score=105.71 Aligned_cols=123 Identities=19% Similarity=0.139 Sum_probs=90.5
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
.++||++|||||||=||+.+++.|++.|.+ |++.+. +..+.+.+.... ...++.++.+|++++
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~Ga~---Vvi~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~D~~~~------ 80 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRGCK---VIVNYANSTESAEEVVAAIKK-----NGSDAACVKANVGVV------ 80 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTCH------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEeCCchHHHHHHHHHHHh-----hCCceeeEeCCCCCH------
Confidence 378999999999999999999999998864 444322 222333332211 345788999999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeece
Q 042694 184 DLADVIAK-------EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAY 243 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~ 243 (554)
++.+.+++ .+|+++|+|+.... .+.++..+++|+.|+..+.+.+.. |.+-.+.+.++|..
T Consensus 81 ~~v~~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~ 155 (272)
T d1g0oa_ 81 EDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT 155 (272)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred HHHHHHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccc
Confidence 66665543 78999999997643 356888999999999999999865 33345777777654
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.3e-09 Score=105.21 Aligned_cols=170 Identities=15% Similarity=0.098 Sum_probs=113.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|.||||||++-||+.++++|.+.|.+|-.|+...+ ...+++.+.... ......++..+.+|++++ ++.+.
T Consensus 3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~Dv~~~------~~~~~ 74 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARA--LACPPGSLETLQLDVRDS------KSVAA 74 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHH--TTCCTTSEEEEECCTTCH------HHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHH--HhccCCceEEEeccccch------Hhhhh
Confidence 56899999999999999999998877645554322 222333332111 001345899999999998 77776
Q ss_pred Hhc-----CccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccccceee
Q 042694 189 IAK-----EVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQRRGKVM 253 (554)
Q Consensus 189 l~~-----~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~~~~i~ 253 (554)
+.+ .+|+++|+|+.... .+.++..+++|+.|+.++.+.+.. | .+-.++|++||.......
T Consensus 75 ~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~----- 149 (285)
T d1jtva_ 75 ARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL----- 149 (285)
T ss_dssp HHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-----
T ss_pred hhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCC-----
Confidence 653 69999999987543 357889999999999999887753 2 244689999997553321
Q ss_pred ccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceee
Q 042694 254 EKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIE 325 (554)
Q Consensus 254 E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~ 325 (554)
+....|...+..+ ..+++.++.+... .|+.+..+.||.|-
T Consensus 150 -----------------------~~~~~Y~asKaal--------~~l~~~la~El~~-~gIrVn~V~PG~v~ 189 (285)
T d1jtva_ 150 -----------------------PFNDVYCASKFAL--------EGLCESLAVLLLP-FGVHLSLIECGPVH 189 (285)
T ss_dssp -----------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECCBC
T ss_pred -----------------------CCchHHHHHHHHH--------HHHHHHHHHHhhc-cCcEEEEEecCCCC
Confidence 1111222222222 1355666555543 48999999999883
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=1.2e-09 Score=106.18 Aligned_cols=212 Identities=17% Similarity=0.165 Sum_probs=126.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc-----------hhHHHHHHHcCCchhhhccCcEEEEEccCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA-----------ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCE 176 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~-----------~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~ 176 (554)
++||+++||||++-||+.++++|++.|. +|++.+. ...+.+.++.. .+......|+.+
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~Ga---~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~ 73 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERGA---LVVVNDLGGDFKGVGKGSSAADKVVEEIR--------RRGGKAVANYDS 73 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECCCBCTTSCBCCSHHHHHHHHHHH--------HTTCEEEEECCC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCchhhhhhhhHHHHHHHHHHHh--------hcccccccccch
Confidence 6799999999999999999999999886 4454321 12222222221 122335567766
Q ss_pred CCCCCCHHHHHHHh---cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeece
Q 042694 177 NNLGLEEDLADVIA---KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAY 243 (554)
Q Consensus 177 ~~lGLs~~~~~~l~---~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~ 243 (554)
..- .++..+.+. .++|++||+||.... .+.++..+++|+.|+..+.+.+.. | .+--++|++||..
T Consensus 74 ~~~--~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~ 151 (302)
T d1gz6a_ 74 VEA--GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASAS 151 (302)
T ss_dssp GGG--HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHH
T ss_pred HHH--HHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChh
Confidence 510 012222222 279999999997543 357889999999999999988754 2 2345999999976
Q ss_pred ecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccce
Q 042694 244 VNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 244 v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
...... ....|...+..+ ..+++.++.+... .|+.+..+-||.
T Consensus 152 ~~~~~~----------------------------~~~~Y~asKaal--------~~lt~~la~E~~~-~gIrVN~I~PG~ 194 (302)
T d1gz6a_ 152 GIYGNF----------------------------GQANYSAAKLGL--------LGLANTLVIEGRK-NNIHCNTIAPNA 194 (302)
T ss_dssp HHHCCT----------------------------TCHHHHHHHHHH--------HHHHHHHHHHTGG-GTEEEEEEEEEC
T ss_pred hcCCCC----------------------------CcHHHHHHHHHH--------HHHHHHHHHHHhc-cCCceeeeCCCC
Confidence 532211 111122222222 1356666655543 489999999987
Q ss_pred eeecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+..... ... ++.....+..+++|++++.++.... ...++++++.++
T Consensus 195 ~~t~~~----~~~------------------------~~~~~~~~~PedvA~~v~fL~S~~a---~itG~~i~vdGG 240 (302)
T d1gz6a_ 195 GSRMTE----TVM------------------------PEDLVEALKPEYVAPLVLWLCHESC---EENGGLFEVGAG 240 (302)
T ss_dssp CSTTTG----GGS------------------------CHHHHHHSCGGGTHHHHHHHTSTTC---CCCSCEEEEETT
T ss_pred CCcchh----hcC------------------------cHhhHhcCCHHHHHHHHHHHcCCCc---CCCCcEEEeCCC
Confidence 632111 000 0001223345889999887764322 234677777766
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.02 E-value=3.1e-09 Score=100.43 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=83.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
||+|||||||+=||+.++++|++...+-.+|++..+ +..+.+.+... ...++.++.+|++++ ++.+
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~Dvs~~------~~v~ 69 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK------NHSNIHILEIDLRNF------DAYD 69 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHH------HCTTEEEEECCTTCG------GGHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh------cCCcEEEEEEEeccH------HHHH
Confidence 689999999999999999999863222235665432 22233332211 235889999999987 4444
Q ss_pred HHh---------cCccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc--------------CCCceE
Q 042694 188 VIA---------KEVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC--------------NKLKLF 236 (554)
Q Consensus 188 ~l~---------~~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~--------------~~~k~~ 236 (554)
.+. ..+|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++
T Consensus 70 ~~~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~i 149 (248)
T d1snya_ 70 KLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAI 149 (248)
T ss_dssp HHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEE
T ss_pred HHHhhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 332 269999999996432 1347789999999999888776431 123578
Q ss_pred EEEeece
Q 042694 237 VQVSTAY 243 (554)
Q Consensus 237 v~vST~~ 243 (554)
|.+||..
T Consensus 150 i~i~S~~ 156 (248)
T d1snya_ 150 INMSSIL 156 (248)
T ss_dssp EEECCGG
T ss_pred ccccccc
Confidence 8888854
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.00 E-value=2.3e-09 Score=101.88 Aligned_cols=223 Identities=15% Similarity=0.109 Sum_probs=130.3
Q ss_pred ccCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEc-c-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 108 LKAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIIN-A-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 108 ~~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~-~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
++||++|||||+| =||+.++++|++.|.+| ++.+ + ...+...+... ...+..++.+|++++
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V---~i~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~------ 70 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEV---ALSYQAERLRPEAEKLAE------ALGGALLFRADVTQD------ 70 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEE---EEEESSGGGHHHHHHHHH------HTTCCEEEECCTTCH------
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCEE---EEEeCcHHHHHHHHHhhh------ccCcccccccccCCH------
Confidence 5799999999997 59999999999988754 4332 2 22222222111 223567899999987
Q ss_pred HHHHHHhc-------CccEEEEcCCCCC-------c----hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeecee
Q 042694 184 DLADVIAK-------EVDVIVNSAANTT-------F----DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 184 ~~~~~l~~-------~vdiViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v 244 (554)
++.+.+.+ ++|++||+|+... + .+.+....++|+.++..+.+.+..+ .+-.++|++||...
T Consensus 71 ~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~ 150 (256)
T d1ulua_ 71 EELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYAS 150 (256)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGG
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHh
Confidence 77766653 7999999998643 1 2356778999999999999887642 22247899998765
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcccee
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
.... +....|...+..+. .+++.++.+... .|+.+..+.||.|
T Consensus 151 ~~~~----------------------------~~~~~Y~asKaal~--------~ltr~lA~ela~-~gIrVN~I~PG~i 193 (256)
T d1ulua_ 151 EKVV----------------------------PKYNVMAIAKAALE--------ASVRYLAYELGP-KGVRVNAISAGPV 193 (256)
T ss_dssp TSBC----------------------------TTCHHHHHHHHHHH--------HHHHHHHHHHGG-GTCEEEEEEECCC
T ss_pred cCCC----------------------------CCchHHHHHHHHHH--------HHHHHHHHHhcc-cCCEEeeecccee
Confidence 3321 11111222222221 345555555443 4899999999988
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+.....+..- .... ...... |- --+...+|+|++++.++..... --.++++.+.++
T Consensus 194 ~t~~~~~~~~~~-------~~~~----~~~~~~---pl--~R~~~pedvA~~v~fL~S~~s~--~itG~~i~VDGG 251 (256)
T d1ulua_ 194 RTVAARSIPGFT-------KMYD----RVAQTA---PL--RRNITQEEVGNLGLFLLSPLAS--GITGEVVYVDAG 251 (256)
T ss_dssp ----------CH-------HHHH----HHHHHS---TT--SSCCCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred eeccccchhhhH-------HHHH----HHHhcC---CC--CCCcCHHHHHHHHHHHhCchhC--CccCCeEEECcC
Confidence 543322111100 0000 000000 00 1134568999998887754331 124578877765
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.00 E-value=7e-09 Score=97.01 Aligned_cols=217 Identities=14% Similarity=0.113 Sum_probs=129.4
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.+||+++||||++-||+.++++|++.|. +|++.++. -+.+++. ....+.+|+++. .+...
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga---~V~~~~r~-~~~l~~~-----------~~~~~~~Dv~~~-----~~~~~ 61 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGA---EVTICARN-EELLKRS-----------GHRYVVCDLRKD-----LDLLF 61 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESC-HHHHHHT-----------CSEEEECCTTTC-----HHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECC-HHHHHhc-----------CCcEEEcchHHH-----HHHHH
Confidence 4789999999999999999999999886 45555433 2333322 224577899764 23333
Q ss_pred HHhcCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeeceecccccceeecccc
Q 042694 188 VIAKEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAYVNGQRRGKVMEKPF 257 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~v~~~~~~~i~E~~~ 257 (554)
+-..++|++||+|+.... .+.++..+++|+.++..+.+.+... .+-.++|.+||........
T Consensus 62 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~-------- 133 (234)
T d1o5ia_ 62 EKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIE-------- 133 (234)
T ss_dssp HHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------
T ss_pred HHhCCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccccccccccccccccc--------
Confidence 444689999999996543 3568889999999998888877431 2345889999875433211
Q ss_pred CCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCCcccccc
Q 042694 258 CMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEPFSGWME 337 (554)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p~~g~~~ 337 (554)
....+...+..+ ..+++.++.+... .|+.+..+.||.|-.+... ...+
T Consensus 134 --------------------~~~~Y~asKaal--------~~ltk~lA~ela~-~gIrVN~I~PG~v~T~~~~---~~~~ 181 (234)
T d1o5ia_ 134 --------------------NLYTSNSARMAL--------TGFLKTLSFEVAP-YGITVNCVAPGWTETERVK---ELLS 181 (234)
T ss_dssp --------------------TBHHHHHHHHHH--------HHHHHHHHHHHGG-GTEEEEEEEECSBCCTTHH---HHSC
T ss_pred --------------------ccccchhHHHHH--------HHHHHHHHHHhcc-cCeEEeecccCccchhhhh---hhcC
Confidence 111121112111 1345555555544 4899999999987432110 1000
Q ss_pred CCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 338 GNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 338 ~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
. ... ....... | .--+.-.+|+++++..++.... .--.+++..+.++
T Consensus 182 ~-----~~~----~~~~~~~---p--l~R~~~pediA~~v~fL~S~~s--~~itG~~i~vDGG 228 (234)
T d1o5ia_ 182 E-----EKK----KQVESQI---P--MRRMAKPEEIASVVAFLCSEKA--SYLTGQTIVVDGG 228 (234)
T ss_dssp H-----HHH----HHHHTTS---T--TSSCBCHHHHHHHHHHHHSGGG--TTCCSCEEEESTT
T ss_pred H-----HHH----HHHHhcC---C--CCCCcCHHHHHHHHHHHhChhh--cCCcCcEEEECcc
Confidence 0 000 0000000 0 0124557899999888775432 1234678888766
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=3.8e-09 Score=99.54 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=86.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++||+++||||+|-||+.++++|+++|. +|++.+.. -+++.+.. ....+.....|+... +..+
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~---~Vi~~~r~-~~~l~~~~-------~~~~~~~~~~d~~~~------~~~~ 66 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGA---KVIATDIN-ESKLQELE-------KYPGIQTRVLDVTKK------KQID 66 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESC-HHHHGGGG-------GSTTEEEEECCTTCH------HHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCC-HHHHHHHH-------hccCCceeeeecccc------cccc
Confidence 6899999999999999999999999886 45555432 13333221 123566777887654 4444
Q ss_pred HHh---cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeece
Q 042694 188 VIA---KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTAY 243 (554)
Q Consensus 188 ~l~---~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~~ 243 (554)
... ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.+++++||..
T Consensus 67 ~~~~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~ 135 (245)
T d2ag5a1 67 QFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVA 135 (245)
T ss_dssp HHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSB
T ss_pred ccccccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechh
Confidence 443 489999999998654 3578899999999999998877641 2345899998754
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.1e-08 Score=97.65 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=87.5
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++||+++|||||+-||+.++++|++.|. +|++.++ +..+.+.++. ......++..+..|+.+. +
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~---~Vil~~r~~~~l~~~~~~~----~~~~~~~~~~~~~d~~~~------~ 77 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGA---HVVVTARSKETLQKVVSHC----LELGAASAHYIAGTMEDM------T 77 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH----HHHTCSEEEEEECCTTCH------H
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHH----hhhhcccchhhhhhhhhH------H
Confidence 37899999999999999999999999886 4555543 2233333221 112345777888998876 3
Q ss_pred HHHHH-------hcCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHH-cC-CCceEEEEeecee
Q 042694 185 LADVI-------AKEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQ-CN-KLKLFVQVSTAYV 244 (554)
Q Consensus 185 ~~~~l-------~~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~-~~k~~v~vST~~v 244 (554)
....+ ...+|+++++|+.... .+.++...++|+.|+..+.+.+.. +. +-.++|.+||...
T Consensus 78 ~~~~~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~ 153 (269)
T d1xu9a_ 78 FAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAG 153 (269)
T ss_dssp HHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred HHHHHHHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchh
Confidence 33332 2378999999987432 356788899999999888887753 21 2248899998754
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.93 E-value=1.3e-08 Score=96.18 Aligned_cols=104 Identities=17% Similarity=0.109 Sum_probs=77.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|+|||||||+=||..++++|++.|..+ +|+...+ +..+.+++. ...++.++.+|++++ +..+
T Consensus 3 ~KtilITGassGIG~a~a~~la~~G~~~-~Vi~~~R~~~~~~~l~~~--------~~~~~~~~~~Dvs~~------~~v~ 67 (250)
T d1yo6a1 3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSI--------KDSRVHVLPLTVTCD------KSLD 67 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTC--------CCTTEEEEECCTTCH------HHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCCC-EEEEEeCCHHHHHHHHHh--------hCCceEEEEEecCCH------HHHH
Confidence 5899999999999999999999988655 5665432 222333221 345899999999987 5555
Q ss_pred HHhc---------CccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHH
Q 042694 188 VIAK---------EVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAK 228 (554)
Q Consensus 188 ~l~~---------~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~ 228 (554)
.+.+ .+|++||+||.... .+.++..+++|+.|+..+.+.+.
T Consensus 68 ~~~~~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 125 (250)
T d1yo6a1 68 TFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLL 125 (250)
T ss_dssp HHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTH
T ss_pred HHHHHHHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4432 48999999996421 24678899999999998887764
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=1.6e-08 Score=96.00 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=88.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||.++|||||+-||+.++++|.+...+-.+|++.++ +..+.+.++... .....++.++.+|++++ ++
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~---~~~~~~~~~~~~Dvs~~------~~ 74 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGA---QQPDLKVVLAAADLGTE------AG 74 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHH---HCTTSEEEEEECCTTSH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHh---hcCCceEEEEEccCCCH------HH
Confidence 67999999999999999999999763211125665543 223333332211 11234789999999998 77
Q ss_pred HHHHhc-----------CccEEEEcCCCCC------c----hhhHHHHHHHhchHHHHHHHHHHHc-CC----CceEEEE
Q 042694 186 ADVIAK-----------EVDVIVNSAANTT------F----DERYDIAIDINTRGPCRLMEFAKQC-NK----LKLFVQV 239 (554)
Q Consensus 186 ~~~l~~-----------~vdiViH~AA~v~------~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~----~k~~v~v 239 (554)
.+.+.+ .+|+++|+|+... + .+.++..+++|+.|+..+.+.+... .+ -.++|++
T Consensus 75 v~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~i 154 (259)
T d1oaaa_ 75 VQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNI 154 (259)
T ss_dssp HHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEE
T ss_pred HHHHHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccc
Confidence 666642 4679999998642 1 1468889999999999999988653 21 2378999
Q ss_pred eecee
Q 042694 240 STAYV 244 (554)
Q Consensus 240 ST~~v 244 (554)
||...
T Consensus 155 sS~~~ 159 (259)
T d1oaaa_ 155 SSLCA 159 (259)
T ss_dssp CCGGG
T ss_pred ccccc
Confidence 98754
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=3.8e-08 Score=92.69 Aligned_cols=121 Identities=15% Similarity=0.146 Sum_probs=84.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+++||||++-||+.++++|++.|. +|++.+. +..+.+.++. ..+......|+.+. ++
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~l--------~~~~~~~~~~~~~~------~~ 65 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQGA---SAVLLDLPNSGGEAQAKKL--------GNNCVFAPADVTSE------KD 65 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTSSHHHHHHHH--------CTTEEEEECCTTCH------HH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHHh--------CCCccccccccccc------cc
Confidence 6899999999999999999999999886 4555542 3333333332 34667778888765 33
Q ss_pred HHHHh-------cCccEEEEcCCCCCc-------------hhhHHHHHHHhchHHHHHHHHHHHc---------CCCceE
Q 042694 186 ADVIA-------KEVDVIVNSAANTTF-------------DERYDIAIDINTRGPCRLMEFAKQC---------NKLKLF 236 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~~-------------~~~~~~~~~~Nv~gt~~ll~la~~~---------~~~k~~ 236 (554)
.+... ...|.++++++.... .+.++..+++|+.|+..+.+++... .+--++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~I 145 (248)
T d2o23a1 66 VQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVI 145 (248)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEE
T ss_pred ccccccccccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEE
Confidence 33222 368888888765431 2467889999999999999988542 012379
Q ss_pred EEEeeceec
Q 042694 237 VQVSTAYVN 245 (554)
Q Consensus 237 v~vST~~v~ 245 (554)
|++||.+..
T Consensus 146 i~isS~~~~ 154 (248)
T d2o23a1 146 INTASVAAF 154 (248)
T ss_dssp EEECCTHHH
T ss_pred EEecchhhc
Confidence 999998654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=98.86 E-value=2.4e-08 Score=96.70 Aligned_cols=227 Identities=13% Similarity=0.111 Sum_probs=127.9
Q ss_pred hccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
.++||+++||||||-||+.++++|++.|. +|++.++. ..+...++.. .....++..+.+|++++ +
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga---~Vii~~r~~~~l~~~~~~l~----~~~g~~~~~~~~D~~~~------~ 88 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA---QCVIASRKMDVLKATAEQIS----SQTGNKVHAIQCDVRDP------D 88 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH----HHHSSCEEEEECCTTCH------H
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHH----HhcCCceEEEEecccCh------H
Confidence 48999999999999999999999999886 45555432 2222222111 11345788999999987 6
Q ss_pred HHHHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHH----HcCCCceEEEEeeceecc
Q 042694 185 LADVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAK----QCNKLKLFVQVSTAYVNG 246 (554)
Q Consensus 185 ~~~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~~v~vST~~v~~ 246 (554)
..+.+. ..+|+++|+|+.... .+.+.....+|+.+...+...+. ....-..++.+|+.+...
T Consensus 89 ~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~ 168 (294)
T d1w6ua_ 89 MVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET 168 (294)
T ss_dssp HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH
T ss_pred HHHHHhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh
Confidence 555443 379999999997554 23566778888888777655432 112334556666543322
Q ss_pred cccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeee
Q 042694 247 QRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIES 326 (554)
Q Consensus 247 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g 326 (554)
.. +....|...+..+. .+++.++.+... .|+.+..+-||.|-.
T Consensus 169 ~~----------------------------~~~~~YsasKaal~--------~ltk~lA~ela~-~gIrVN~I~PG~i~T 211 (294)
T d1w6ua_ 169 GS----------------------------GFVVPSASAKAGVE--------AMSKSLAAEWGK-YGMRFNVIQPGPIKT 211 (294)
T ss_dssp CC----------------------------TTCHHHHHHHHHHH--------HHHHHHHHHHGG-GTEEEEEEEECCBCC
T ss_pred cc----------------------------cccchHHHHHHHHH--------HHHHHHHHHHhH-hCeEEEEEccCcccc
Confidence 11 11111222222111 244555544433 489999999999854
Q ss_pred cccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 327 TCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 327 ~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
+... .+.+. ..... .......|. --+.-.+|+|+++..++..... --.+++..+.++
T Consensus 212 ~~~~---~~~~~---~~~~~----~~~~~~~pl-----~R~~~pediA~~v~fL~sd~s~--~itG~~i~vDGG 268 (294)
T d1w6ua_ 212 KGAF---SRLDP---TGTFE----KEMIGRIPC-----GRLGTVEELANLAAFLCSDYAS--WINGAVIKFDGG 268 (294)
T ss_dssp ---------CCT---TSHHH----HHHHTTCTT-----SSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred chhh---hccCC---cHHHH----HHHhhcCCC-----CCCCCHHHHHHHHHHHhCchhc--CCCCcEEEECCC
Confidence 3211 11110 00000 000000000 1134469999999887754331 124678888776
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=8.9e-09 Score=96.42 Aligned_cols=115 Identities=15% Similarity=0.031 Sum_probs=75.9
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+||+|+||||+|-||+.++++|++.|. +|++++... .. ....-..+..|.... ++.+.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~---~V~~~~~~~-------~~------~~~~~~~~~~~~~~~------~~~~~ 58 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNW---WVASIDVVE-------NE------EASASVIVKMTDSFT------EQADQ 58 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSC-------CT------TSSEEEECCCCSCHH------HHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCc-------cc------cccccceeecccCcH------HHHHH
Confidence 489999999999999999999999886 455554210 00 112223334444322 22221
Q ss_pred -------Hhc--CccEEEEcCCCCC---c-----hhhHHHHHHHhchHHHHHHHHHHH-cCCCceEEEEeeceec
Q 042694 189 -------IAK--EVDVIVNSAANTT---F-----DERYDIAIDINTRGPCRLMEFAKQ-CNKLKLFVQVSTAYVN 245 (554)
Q Consensus 189 -------l~~--~vdiViH~AA~v~---~-----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~v~vST~~v~ 245 (554)
... ++|++||+||... . .+.++..+++|+.++..+.+++.. +++-.++|++||....
T Consensus 59 ~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~ 133 (236)
T d1dhra_ 59 VTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL 133 (236)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG
T ss_pred HHHHHHHHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc
Confidence 112 5899999998532 1 245778899999999999988865 3334589999987553
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.82 E-value=2.7e-08 Score=92.98 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=76.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
..+||||||+|-||+.++++|++.|. +|++++...- + .......+.+|.....- .....+.+
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~---~V~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~--~~~~~~~~ 63 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGY---TVLNIDLSAN--------D-----QADSNILVDGNKNWTEQ--EQSILEQT 63 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCC--------T-----TSSEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCch--------h-----cccccceeccccCchhH--HHHHHHHH
Confidence 35799999999999999999999875 5666653210 0 12233445666554310 00111111
Q ss_pred ---h--cCccEEEEcCCCCCc--------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeecee
Q 042694 190 ---A--KEVDVIVNSAANTTF--------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 190 ---~--~~vdiViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v 244 (554)
. .++|++||+||.... .+.++..+++|+.++..+.+++... .+-.+++++||...
T Consensus 64 ~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~ 132 (235)
T d1ooea_ 64 ASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAA 132 (235)
T ss_dssp HHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred HHHhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHh
Confidence 1 368999999985322 2456778999999999999888652 23358999998754
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=9.4e-09 Score=98.61 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=85.8
Q ss_pred CcEE-EEecccccccHHHHHHHHhh-CCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 110 AKNF-FVTGATGFLAKVLIEKILRT-VPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 110 ~~~V-lITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
||+| +||||++=||..++++|++. +. +|++.++ +..+.+.++... ...++.++.+|+++. +.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~---~Vi~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dvs~~------~s 67 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG---DVVLTARDVTRGQAAVQQLQA-----EGLSPRFHQLDIDDL------QS 67 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS---EEEEEESSHHHHHHHHHHHHH-----TTCCCEEEECCTTCH------HH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEEecCCH------HH
Confidence 5666 89999999999999999986 54 4554432 222222222211 234678899999987 66
Q ss_pred HHHHh-------cCccEEEEcCCCCCc-------hhhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeecee
Q 042694 186 ADVIA-------KEVDVIVNSAANTTF-------DERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 186 ~~~l~-------~~vdiViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v 244 (554)
.+.+. ..+|++||+||.... .+.++..+++|+.|+..+.+.+... ++-.++|.+||...
T Consensus 68 v~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~ 141 (275)
T d1wmaa1 68 IRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMS 141 (275)
T ss_dssp HHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccce
Confidence 55443 279999999997532 3467788999999999999988642 22248999999755
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.73 E-value=2.5e-08 Score=94.21 Aligned_cols=218 Identities=12% Similarity=0.016 Sum_probs=124.7
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+++||||++-||+.++++|++.|. +|++.+. +..+.+..... ....+|++++ ++.+.+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga---~V~i~~r~~~~~~~~~~~~~-----------~~~~~dv~~~------~~~~~~ 61 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH---TVACHDESFKQKDELEAFAE-----------TYPQLKPMSE------QEPAEL 61 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGSHHHHHHHHH-----------HCTTSEECCC------CSHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHhhhC-----------cEEEeccCCH------HHHHHH
Confidence 689999999999999999999886 4555543 22333332211 1134677665 333333
Q ss_pred h-------cCccEEEEcCCCC-C---c----hhhHHHHHHHhchHHHHHHHHHHH-c--CCCceEEEEeeceecccccce
Q 042694 190 A-------KEVDVIVNSAANT-T---F----DERYDIAIDINTRGPCRLMEFAKQ-C--NKLKLFVQVSTAYVNGQRRGK 251 (554)
Q Consensus 190 ~-------~~vdiViH~AA~v-~---~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~v~vST~~v~~~~~~~ 251 (554)
. .++|++||+|+.. . + .+.++..+++|+.|+..+.+.+.. | .+--++|++||.......
T Consensus 62 ~~~~~~~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~--- 138 (252)
T d1zmta1 62 IEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW--- 138 (252)
T ss_dssp HHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC---
T ss_pred HHHHHHHcCCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccccc---
Confidence 2 3799999999853 2 2 246888999999999998887753 2 234589999997553321
Q ss_pred eeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccceeeecccCC
Q 042694 252 VMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVIESTCKEP 331 (554)
Q Consensus 252 i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V~g~~~~p 331 (554)
+....|...+..+ ..+++.++.+... .|+.+..+.||.|-.+...
T Consensus 139 -------------------------~~~~~Y~asKaal--------~~lt~~lA~ela~-~gIrVN~I~PG~i~T~~~~- 183 (252)
T d1zmta1 139 -------------------------KELSTYTSARAGA--------CTLANALSKELGE-YNIPVFAIGPNYLHSEDSP- 183 (252)
T ss_dssp -------------------------TTCHHHHHHHHHH--------HHHHHHHHHHHGG-GTCCEEEEEESSBCCBTCC-
T ss_pred -------------------------ccccccccccccH--------HHHHHHHHHHhcc-cCcEEEEEecCCCcCcchh-
Confidence 1111122222222 1355666555544 4899999999998543221
Q ss_pred ccccccCC--CCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 332 FSGWMEGN--RMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 332 ~~g~~~~~--~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
.+.... ......... ..... |- --+...+|+|++++-++..... --.+++.++.++
T Consensus 184 --~~~~~~~~~~~~e~~~~----~~~~~---pl--~R~g~pedvA~~v~fL~S~~s~--~iTG~~i~vdGG 241 (252)
T d1zmta1 184 --YFYPTEPWKTNPEHVAH----VKKVT---AL--QRLGTQKELGELVAFLASGSCD--YLTGQVFWLAGG 241 (252)
T ss_dssp --SSCBHHHHTTCHHHHHH----HHHHS---SS--SSCBCHHHHHHHHHHHHTTSCG--GGTTCEEEESTT
T ss_pred --hhhhcccccCCHHHHHH----HHhcC---CC--CCCcCHHHHHHHHHHHhCchhc--CCcCCeEEECCC
Confidence 111000 000000000 00000 00 0144578999998888754321 123578888776
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=9.1e-08 Score=90.51 Aligned_cols=226 Identities=17% Similarity=0.141 Sum_probs=129.6
Q ss_pred hccCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHH
Q 042694 107 FLKAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 107 ~~~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
+++||+||||||+| -||+.+++.|++.|.+| .+...+....+.+.+... ...+...+..|+.+. .
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V-~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~------~ 68 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAEL-AFTYQNDKLKGRVEEFAA------QLGSDIVLQCDVAED------A 68 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEE-EEEESSTTTHHHHHHHHH------HTTCCCEEECCTTCH------H
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEE-EEEeCCHHHHHHHHHHHh------hcCCcceeecccchH------H
Confidence 36899999999998 57799999999988755 222233333333332221 233556778888775 4
Q ss_pred HHHHHh-------cCccEEEEcCCCCCch------------hhHHHHHHHhchHHHHHHHHHHHc-CCCceEEEEeecee
Q 042694 185 LADVIA-------KEVDVIVNSAANTTFD------------ERYDIAIDINTRGPCRLMEFAKQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 185 ~~~~l~-------~~vdiViH~AA~v~~~------------~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~v~vST~~v 244 (554)
+..... ...|+++|+|+..... +.......+|+.+...+.+.+... .+-..++++||...
T Consensus 69 ~~~~~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~ 148 (258)
T d1qsga_ 69 SIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGA 148 (258)
T ss_dssp HHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGG
T ss_pred HHHHHHHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhh
Confidence 433333 2689999999875432 235567788899998888887653 23346788888654
Q ss_pred cccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEcccee
Q 042694 245 NGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSVI 324 (554)
Q Consensus 245 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~V 324 (554)
.... |....|...+..+. .+++.++.+.. ..|+.+..++||.|
T Consensus 149 ~~~~----------------------------~~~~~Y~~sKaal~--------~ltr~lA~el~-~~gIrVN~I~PG~i 191 (258)
T d1qsga_ 149 ERAI----------------------------PNYNVMGLAKASLE--------ANVRYMANAMG-PEGVRVNAISAGPI 191 (258)
T ss_dssp TSBC----------------------------TTTTHHHHHHHHHH--------HHHHHHHHHHT-TTTEEEEEEEECCC
T ss_pred ccCC----------------------------CCcHHHHHHHHHHH--------HHHHHHHHHhC-ccCceeeccccccc
Confidence 2221 11222332232221 24455554443 35899999999999
Q ss_pred eecccCCccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 325 ESTCKEPFSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 325 ~g~~~~p~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
..+..+ +... ....... .....| . --+.-.+|+++++.-++.... .--.+.++.+.++
T Consensus 192 ~T~~~~----~~~~---~~~~~~~-~~~~~p---l-----~R~~~peeia~~v~fL~s~~s--~~itG~~i~vDGG 249 (258)
T d1qsga_ 192 RTLAAS----GIKD---FRKMLAH-CEAVTP---I-----RRTVTIEDVGNSAAFLCSDLS--AGISGEVVHVDGG 249 (258)
T ss_dssp CCTTGG----GSTT---HHHHHHH-HHHHST---T-----SSCCCHHHHHHHHHHHTSGGG--TTCCSCEEEESTT
T ss_pred cccccc----ccch---hhhHHHH-HHhCCC---C-----CCCcCHHHHHHHHHHHhCchh--cCccCceEEECcC
Confidence 543221 1110 0000000 000110 0 114457899999888775432 1224578887766
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=98.56 E-value=4.4e-07 Score=86.12 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=74.7
Q ss_pred hccCcEEEEeccccc--ccHHHHHHHHhhCCCccEEEEEcchh---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCC
Q 042694 107 FLKAKNFFVTGATGF--LAKVLIEKILRTVPDVGKIFIINAEL---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGL 181 (554)
Q Consensus 107 ~~~~~~VlITGaTGF--lG~~Ll~~LL~~~~~V~~i~~~~~~~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGL 181 (554)
.++||+|+||||+|- ||..++++|.+.|. +|++..... .+++.+. ...+...+++|++++
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga---~Vil~~~~~~~~~~~~~~~--------~~~~~~~~~~dv~~~---- 67 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA---QLVLTGFDRLRLIQRITDR--------LPAKAPLLELDVQNE---- 67 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC---EEEEEECSCHHHHHHHHTT--------SSSCCCEEECCTTCH----
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC---EEEEEeCChHHHHHHHHHH--------cCCceeeEeeecccc----
Confidence 368999999997664 99999999999886 445443221 1222221 344677889999886
Q ss_pred CHHHHHHHh----------cCccEEEEcCCCCCc------------hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 182 EEDLADVIA----------KEVDVIVNSAANTTF------------DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 182 s~~~~~~l~----------~~vdiViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
++.+.+. ..+|+++|+|+.... ..........|+.+.....+.+....+-...+.+
T Consensus 68 --~~~~~~~~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 145 (268)
T d2h7ma1 68 --EHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVG 145 (268)
T ss_dssp --HHHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred --cccccccchhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccccccc
Confidence 4444332 257999999996421 1234456677777777777766543333344444
Q ss_pred ee
Q 042694 240 ST 241 (554)
Q Consensus 240 ST 241 (554)
+|
T Consensus 146 ~s 147 (268)
T d2h7ma1 146 MD 147 (268)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=98.49 E-value=1.4e-08 Score=76.78 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=39.8
Q ss_pred CCcchhHHHHhhcccceeeeeccccc----cccccCCchhHHHHHHHHHhhhhceee
Q 042694 10 SVAPNKFVKAFENNCDLCLLRRKRSI----MHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+..+.++.+ +|+.+++.+.+ |||++|||||+|++|+++|++++++++
T Consensus 6 ~~~E~~l~~------i~~~vL~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~l 56 (76)
T d2gdwa1 6 NAVESKLAE------IWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVEL 56 (76)
T ss_dssp SHHHHHHHH------HHHHHTTSSCCCTTTTSSTTTCTTHHHHHHHHHHHHTTSSCC
T ss_pred CHHHHHHHH------HHHHHcCCCCCCCCCCHHHcCCChHHHHHHHHHHHHHHCCCC
Confidence 445667777 89977665544 999999999999999999999999998
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.46 E-value=5.1e-08 Score=87.93 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=59.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
++||+|+||||+|.+|+.+++.|++.|.+ |++.++ +..+.+.+.... ..++....+|++++ ++
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G~~---V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~d~~~~------~~ 85 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEGAE---VVLCGRKLDKAQAAADSVNK------RFKVNVTAAETADD------AS 85 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSHHHHHHHHHHHHH------HHTCCCEEEECCSH------HH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhccc---hhhcccchHHHHHHHHHHHh------ccchhhhhhhcccH------HH
Confidence 68999999999999999999999998864 444433 222223222211 12445678899987 88
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
.+....++|+|||+|+.
T Consensus 86 ~~~~~~~iDilin~Ag~ 102 (191)
T d1luaa1 86 RAEAVKGAHFVFTAGAI 102 (191)
T ss_dssp HHHHTTTCSEEEECCCT
T ss_pred HHHHhcCcCeeeecCcc
Confidence 88889999999999985
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=98.42 E-value=1.6e-06 Score=82.49 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=57.1
Q ss_pred hccCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEc--chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCC
Q 042694 107 FLKAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIIN--AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLE 182 (554)
Q Consensus 107 ~~~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~--~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs 182 (554)
+++||++|||||+| -||..++++|++.|.+ |++.+ ....+++++... ......++..|++++
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~---V~i~~r~~~~~~~~~~l~~------~~~~~~~~~~d~~~~----- 67 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT---LAFTYLNESLEKRVRPIAQ------ELNSPYVYELDVSKE----- 67 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE---EEEEESSTTTHHHHHHHHH------HTTCCCEEECCTTCH-----
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHh------hCCceeEeeecccch-----
Confidence 46899999999987 6999999999998875 44443 222333333221 123445678898876
Q ss_pred HHHHHHHh-------cCccEEEEcCCCCC
Q 042694 183 EDLADVIA-------KEVDVIVNSAANTT 204 (554)
Q Consensus 183 ~~~~~~l~-------~~vdiViH~AA~v~ 204 (554)
++.+.+. ..+|+++|+++...
T Consensus 68 -~~~~~~~~~~~~~~g~id~lV~nag~~~ 95 (274)
T d2pd4a1 68 -EHFKSLYNSVKKDLGSLDFIVHSVAFAP 95 (274)
T ss_dssp -HHHHHHHHHHHHHTSCEEEEEECCCCCC
T ss_pred -hhHHHHHHHHHHHcCCCCeEEeeccccc
Confidence 5544443 37999999999753
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=98.29 E-value=1.7e-05 Score=75.32 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=68.1
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEc-c--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCC---------
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN-A--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNL--------- 179 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~-~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~l--------- 179 (554)
.++||||++-||+.++++|++.|.+ |++.. + ...+.+.+... .........+.+|.....-
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga~---V~i~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 76 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGYA---VCLHYHRSAAEANALSATLN----ARRPNSAITVQADLSNVATAPVSGADGS 76 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCHHHHHHHHHHHH----HHSTTCEEEEECCCSSSCBCCCC----C
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCE---EEEEeCCCHHHHHHHHHHHH----hhcCCceEEEEeeccccccccccccccc
Confidence 5799999999999999999998864 44432 2 22233333221 1123455666666443211
Q ss_pred -CCCH-HHHHHHh-------cCccEEEEcCCCCCch---------------------hhHHHHHHHhchHHHHHHHHHHH
Q 042694 180 -GLEE-DLADVIA-------KEVDVIVNSAANTTFD---------------------ERYDIAIDINTRGPCRLMEFAKQ 229 (554)
Q Consensus 180 -GLs~-~~~~~l~-------~~vdiViH~AA~v~~~---------------------~~~~~~~~~Nv~gt~~ll~la~~ 229 (554)
.+++ ++.+.+. .++|++||+||..... ......+.+|+.++..+.+.+..
T Consensus 77 ~dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 156 (284)
T d1e7wa_ 77 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH 156 (284)
T ss_dssp CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccc
Confidence 1111 4444443 3799999999975321 12334678999999988887654
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.24 E-value=4.1e-06 Score=77.70 Aligned_cols=208 Identities=11% Similarity=0.066 Sum_probs=120.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|++||||||+-||+.++++|++.|. +|++.+... ...+...+++|++.. .....+
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga---~V~i~~~~~---------------~~~~~~~~~~d~~~~------~~~~~~ 56 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGY---RVVVLDLRR---------------EGEDLIYVEGDVTRE------EDVRRA 56 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESSC---------------CSSSSEEEECCTTCH------HHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCc---------------ccccceEeeccccch------hhhHHH
Confidence 47999999999999999999999986 455554320 123456788998876 333322
Q ss_pred h------cCccEEEEcCCCCC-----------chhhHHHHHHHhchHHHHHHHHHHHc---------CCCceEEEEeece
Q 042694 190 A------KEVDVIVNSAANTT-----------FDERYDIAIDINTRGPCRLMEFAKQC---------NKLKLFVQVSTAY 243 (554)
Q Consensus 190 ~------~~vdiViH~AA~v~-----------~~~~~~~~~~~Nv~gt~~ll~la~~~---------~~~k~~v~vST~~ 243 (554)
. ...+.+++.++... ..+.++...++|+.+...+.+.+... .+--++|++||..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~ 136 (241)
T d1uaya_ 57 VARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVA 136 (241)
T ss_dssp HHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTH
T ss_pred HHhhhccccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchh
Confidence 2 24556666554321 12467788999999998888776542 1224899999976
Q ss_pred ecccccceeeccccCCCCCcccccccccccCCCCCCChHHHHHHhhhccCCCCchHHHHHHHhhhhhcCCCcEEEEccce
Q 042694 244 VNGQRRGKVMEKPFCMGDSIAKENFVSNSRRLIPTLDVENEMKLALESKEFSTDGEVAQKMKGLGLERGDIPVVIIRPSV 323 (554)
Q Consensus 244 v~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~k~~ae~l~e~~~~~~glp~~I~Rp~~ 323 (554)
...... ....|...+..+. .+++.++.+... .|+.+..+-||.
T Consensus 137 ~~~~~~----------------------------~~~~Y~asKaal~--------~lt~~lA~ela~-~gIrVN~V~PG~ 179 (241)
T d1uaya_ 137 AFEGQI----------------------------GQAAYAASKGGVV--------ALTLPAARELAG-WGIRVVTVAPGL 179 (241)
T ss_dssp HHHCCT----------------------------TCHHHHHHHHHHH--------HHHHHHHHHHGG-GTEEEEEEEECS
T ss_pred hccCCC----------------------------CchhhHHHHHHHH--------HHHHHHHHHHhh-cCCceeeecCCc
Confidence 533211 1111222222221 355566555443 489999999999
Q ss_pred eeecccCC-ccccccCCCCccceeeeeccceeeeeecCCCcccccchhhHHHHHHHHHHHHhcccCCCCCeEEEeeCC
Q 042694 324 IESTCKEP-FSGWMEGNRMMDPIILYYGKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASS 400 (554)
Q Consensus 324 V~g~~~~p-~~g~~~~~~~~~~i~~~~~~G~~~~~~~~~~~~~d~vpVD~va~aii~~~~~~~~~~~~~~~vyn~~~~ 400 (554)
|-.+.... ...+... ... ..+ . . --+.-.+|+|++++.++.... -.+++.++.++
T Consensus 180 i~T~~~~~~~~~~~~~----------~~~-~~~---~--~--~R~g~pedvA~~v~fL~s~~~----iTG~~i~VDGG 235 (241)
T d1uaya_ 180 FDTPLLQGLPEKAKAS----------LAA-QVP---F--P--PRLGRPEEYAALVLHILENPM----LNGEVVRLDGA 235 (241)
T ss_dssp CSSHHHHTSCHHHHHH----------HHT-TCC---S--S--CSCCCHHHHHHHHHHHHHCTT----CCSCEEEESTT
T ss_pred ccccccchhhhhHHHH----------HHh-cCC---C--C--CCCcCHHHHHHHHHHHHhCCC----CCCCEEEECCc
Confidence 84322111 0000000 000 000 0 0 013346889999888775332 23578888766
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=98.13 E-value=1.9e-05 Score=75.54 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=74.1
Q ss_pred ccCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEcch-hHHHHHH--HcCC-ch----h---hhccCcEEEEEccC
Q 042694 108 LKAKNFFVTGATG--FLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQ--TYGK-SY----Q---AFMLSKLVPAVGNV 174 (554)
Q Consensus 108 ~~~~~VlITGaTG--FlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~--~~~~-~~----~---~~~~~kv~~v~GDl 174 (554)
++||++|||||+| -||+.+++.|++.|.+ |++.... ....... .... .. . .....++..+..++
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~---Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAE---ILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF 82 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCE---EEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCE---EEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 5899999999987 6999999999998864 4444321 1111111 1100 00 0 00112344444333
Q ss_pred CCCCCC------------CC----HHHHHHHh---cCccEEEEcCCCCC-----c----hhhHHHHHHHhchHHHHHHHH
Q 042694 175 CENNLG------------LE----EDLADVIA---KEVDVIVNSAANTT-----F----DERYDIAIDINTRGPCRLMEF 226 (554)
Q Consensus 175 ~~~~lG------------Ls----~~~~~~l~---~~vdiViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~l 226 (554)
..+..- .+ ++..+.+. ..+|++||+||... + .+.+...+++|+.++..+.+.
T Consensus 83 ~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~ 162 (297)
T d1d7oa_ 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH 162 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhH
Confidence 322100 00 11222222 37999999998632 2 245788999999999999988
Q ss_pred HHHcCC-CceEEEEeece
Q 042694 227 AKQCNK-LKLFVQVSTAY 243 (554)
Q Consensus 227 a~~~~~-~k~~v~vST~~ 243 (554)
+..... -...+.+|+..
T Consensus 163 ~~~~~~~~g~~~~~~~~~ 180 (297)
T d1d7oa_ 163 FLPIMNPGGASISLTYIA 180 (297)
T ss_dssp HGGGEEEEEEEEEEECGG
T ss_pred HHHHhhcCCcceeeeehh
Confidence 764311 12345555543
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.01 E-value=2.7e-05 Score=75.79 Aligned_cols=133 Identities=12% Similarity=0.081 Sum_probs=74.7
Q ss_pred cCcEEEEec--ccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCch-------hhhccCcEEEEEccCCCC
Q 042694 109 KAKNFFVTG--ATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSY-------QAFMLSKLVPAVGNVCEN 177 (554)
Q Consensus 109 ~~~~VlITG--aTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~-------~~~~~~kv~~v~GDl~~~ 177 (554)
++|..|||| ++.-||..+++.|.+.|-+ |++.... ............. .............|....
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~---V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVK---IIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFD 77 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCE---EEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCS
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCE---EEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceeh
Confidence 367899999 5557999999999998864 4443321 1111111111100 000112223344443311
Q ss_pred CCCC-----------------C-HHHHHH---HhcCccEEEEcCCCCC-----c----hhhHHHHHHHhchHHHHHHHHH
Q 042694 178 NLGL-----------------E-EDLADV---IAKEVDVIVNSAANTT-----F----DERYDIAIDINTRGPCRLMEFA 227 (554)
Q Consensus 178 ~lGL-----------------s-~~~~~~---l~~~vdiViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la 227 (554)
.... + +...+. -..++|++||+||... + .+.+....++|+.|+..+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~ 157 (329)
T d1uh5a_ 78 TANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYF 157 (329)
T ss_dssp SGGGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHH
Confidence 0000 0 111122 2248999999998643 2 2568899999999999998887
Q ss_pred HHc-CCCceEEEEeecee
Q 042694 228 KQC-NKLKLFVQVSTAYV 244 (554)
Q Consensus 228 ~~~-~~~k~~v~vST~~v 244 (554)
..+ ++-.++|.+||...
T Consensus 158 ~~~m~~~GsIv~iss~~~ 175 (329)
T d1uh5a_ 158 VNIMKPQSSIISLTYHAS 175 (329)
T ss_dssp GGGEEEEEEEEEEECGGG
T ss_pred Hhhcccccccccceeehh
Confidence 653 23347888876543
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.80 E-value=0.00028 Score=65.81 Aligned_cols=109 Identities=16% Similarity=0.119 Sum_probs=67.6
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcc---hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA---ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~---~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
+.+||||++-||+.++++|++.|. +|++.+. ...+.+.++.. .....+...+..|.....- .++....
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~---~Vvi~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~ 73 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGF---RVVVHYRHSEGAAQRLVAELN----AARAGSAVLCKGDLSLSSS--LLDCCED 73 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHHHHHHHHHHHH----HHSTTCEEEEECCCSSSTT--HHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCchHHHHHHHHHHH----hhcCCceEEEecccccchh--HHHHHHH
Confidence 579999999999999999999886 4555542 22333333321 1234466677777654310 1122322
Q ss_pred Hh-------cCccEEEEcCCCCCc------------------hhhHHHHHHHhchHHHHHHHHHHH
Q 042694 189 IA-------KEVDVIVNSAANTTF------------------DERYDIAIDINTRGPCRLMEFAKQ 229 (554)
Q Consensus 189 l~-------~~vdiViH~AA~v~~------------------~~~~~~~~~~Nv~gt~~ll~la~~ 229 (554)
+. ..+|+++|+|+.... +.........|+.+.......+..
T Consensus 74 ~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (266)
T d1mxha_ 74 IIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFAR 139 (266)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhcc
Confidence 22 379999999996431 123446667787777777666654
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.75 E-value=3.1e-06 Score=63.38 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=36.8
Q ss_pred CCcchhHHHHhhcccceeeeecc---ccc----cccccCCchhHHHHHHHHHhhhhceee
Q 042694 10 SVAPNKFVKAFENNCDLCLLRRK---RSI----MHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~---~~~----~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.++.++.+ .|+.+++- ..| +||++|||||+|++|.++|+++||+.+
T Consensus 3 ~~~e~~l~~------~va~~Lgi~~~~~I~~~~~f~~lG~DSl~a~el~~~i~~~~g~~l 56 (76)
T d2pnga1 3 GEAQRDLVK------AVAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVL 56 (76)
T ss_dssp CSCCCCGGG------THHHHHTCSSCTTSCSSSCHHHHTCSSHHHHHHHHHHHHHTCCCC
T ss_pred cHHHHHHHH------HHHHHhccCCHhhCCCCCCHHHhCCcHHHHHHHHHHHHHHhCCCC
Confidence 345566666 67744431 223 999999999999999999999999998
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.40 E-value=3.6e-05 Score=58.48 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=27.4
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+||++|||||.+++|...|+++||+.+
T Consensus 25 ~~~f~dlG~DSl~~~~l~~~le~~f~v~i 53 (83)
T d2jq4a1 25 EADLYAAGLSSFASVQLMLGIEEAFDIEF 53 (83)
T ss_dssp TSCGGGGTCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHHhCccHHHHHHHHHHHHHHCCCC
Confidence 33999999999999999999999999998
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.21 E-value=0.0011 Score=55.51 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=75.5
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHhc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIAK 191 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~ 191 (554)
+|.|+||+|.+|+.+...|..+ .-+..++++|...-......... ....... .+-+. ..+..+.++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~-~~~~elvLiDi~~~~~~a~Dl~~---~~~~~~~---~~~~~-------~~~~~~~~~ 67 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIAHTPGVAADLSH---IETRATV---KGYLG-------PEQLPDCLK 67 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESSSHHHHHHHHTT---SSSSCEE---EEEES-------GGGHHHHHT
T ss_pred eEEEECCCChHHHHHHHHHHhC-CccceEEEEeccccchhhHHHhh---hhhhcCC---CeEEc-------CCChHHHhC
Confidence 6899999999999998877764 45678888875321111111110 0011111 11111 144445568
Q ss_pred CccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 192 EVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 192 ~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++|+|+-+|+.-+- .+...++.+.|+.-.+++++.+.++ +.+.++.+-|
T Consensus 68 ~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvt 117 (144)
T d1mlda1 68 GCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIIS 117 (144)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred CCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence 99999999986433 3456788999999999999999986 6677777766
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=97.17 E-value=0.00058 Score=63.19 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=68.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH-
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV- 188 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~- 188 (554)
||.|+||||+|-||+.++++|++.|. +|++.+... .+ ...|+.+. +....
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga---~V~~~~~~~-----------------~~---~~~d~~~~------~~~~~~ 51 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGH---QIVGIDIRD-----------------AE---VIADLSTA------EGRKQA 51 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSS-----------------SS---EECCTTSH------HHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCh-----------------HH---HHHHhcCH------HHHHHH
Confidence 57899999999999999999999886 455554310 00 23355443 21111
Q ss_pred ---H----hcCccEEEEcCCCCCchhhHHHHHHHhchHHHHHHHHHHHc---CCCceEEEEeec
Q 042694 189 ---I----AKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLMEFAKQC---NKLKLFVQVSTA 242 (554)
Q Consensus 189 ---l----~~~vdiViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~v~vST~ 242 (554)
. ...+|+++|+|+.....+.+.....+|..+...+.+..... ........+++.
T Consensus 52 ~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (257)
T d1fjha_ 52 IADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV 115 (257)
T ss_dssp HHHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred HHHHHHHhCCCCcEEEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeec
Confidence 1 13699999999987666777788889999988877655431 233445555543
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=97.01 E-value=0.00016 Score=54.47 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=26.9
Q ss_pred ccccccCCchhHHHHHHHHHhhhhceee
Q 042694 35 IMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 35 ~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
..|+++|+|||.+++|..+|+++||+.+
T Consensus 30 ~~f~dlG~DSl~~~el~~~le~~~g~~l 57 (82)
T d1or5a_ 30 TPFVDLGYDSLALLETAAVLQQRYGIAL 57 (82)
T ss_dssp SCHHHHSCCHHHHHHHHHHHHTTSCCCC
T ss_pred cCHHHcCCChHhHHHHHHHHHHHHhCcC
Confidence 4799999999999999999999999998
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.0011 Score=55.47 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=70.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHHh
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVIA 190 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~ 190 (554)
++|.|+||+|.+|+++...|..+.+.+..+.++|.... .+...-+............+.+ . .+++. +
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~--~~g~a~Dl~h~~~~~~~~~~~~----~------~~~~~-~ 67 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV--TPGVAVDLSHIPTAVKIKGFSG----E------DATPA-L 67 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT--HHHHHHHHHTSCSSCEEEEECS----S------CCHHH-H
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc--chhHHHHHHCCccccCCcEEEc----C------CCccc-c
Confidence 57999999999999998887655455668888875321 1111000000001122222221 1 33443 4
Q ss_pred cCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEE
Q 042694 191 KEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFV 237 (554)
Q Consensus 191 ~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v 237 (554)
++.|+|+-+|+..+ ..+...++...|..-.+++.+...+. ..+.++
T Consensus 68 ~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~-~p~aiv 114 (145)
T d2cmda1 68 EGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACI 114 (145)
T ss_dssp TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEE
T ss_pred CCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhh-CCCcEE
Confidence 79999999999743 34456688899999999999988875 444443
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.99 E-value=0.0027 Score=53.22 Aligned_cols=116 Identities=10% Similarity=0.041 Sum_probs=71.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCch-hhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSY-QAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~-~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+.++|.|.|+ |.+|+.+...|+.++- +..++++|... ++.+....+.. ............+|..+
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~-~~elvL~D~~~-~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~----------- 69 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVK-DRTKGDALDLEDAQAFTAPKKIYSGEYSD----------- 69 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH-HHHHHHHHHHHGGGGGSCCCEEEECCGGG-----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEeeccc-chhHHHHHHHhccccccCCceEeeccHHH-----------
Confidence 4578999996 9999999999998753 46889888432 12221110000 00112233445666421
Q ss_pred HHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 188 VIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++++|+|+-+|+.-.- .+...++...|+.-.+++.+...+. +.+.++.+-|
T Consensus 70 --~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvt 121 (146)
T d1ez4a1 70 --CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAA 121 (146)
T ss_dssp --GTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred --hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeC
Confidence 3789999999886433 4566688889999999999988884 6666666655
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.91 E-value=0.005 Score=53.17 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=68.7
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhC---C-CccEEEEEcchh-HHHHHHHcCCchhhhccCc--EEEEEccCCCCCCC
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTV---P-DVGKIFIINAEL-FKCLKQTYGKSYQAFMLSK--LVPAVGNVCENNLG 180 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~---~-~V~~i~~~~~~~-~~~l~~~~~~~~~~~~~~k--v~~v~GDl~~~~lG 180 (554)
.+..+|.||||+|.+|++++..|++.. . ..-.+++++.+. .+.+....-+. .+..... -..+..
T Consensus 22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl-~d~a~~~~~~~~~~~-------- 92 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMEL-EDSLYPLLREVSIGI-------- 92 (175)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH-HTTTCTTEEEEEEES--------
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhh-cccccccccCccccc--------
Confidence 455689999999999999999987631 1 112566666432 22222111000 0001111 112222
Q ss_pred CCHHHHHHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHc
Q 042694 181 LEEDLADVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQC 230 (554)
Q Consensus 181 Ls~~~~~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~ 230 (554)
+++ .-++++|+||-.|+..+ ..+...++...|+.-.+++.+...++
T Consensus 93 ---~~~-~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~ 139 (175)
T d7mdha1 93 ---DPY-EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 139 (175)
T ss_dssp ---CHH-HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cch-hhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 222 33479999999998754 45678889999999999999999885
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.81 E-value=0.001 Score=54.82 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=51.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|+|.|+ |.+|+.|++.|.+.+.+ |.+++. +..+++++.. .+.++.||.+++ +.++.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~---v~vid~d~~~~~~~~~~~----------~~~vi~Gd~~~~------~~l~~ 60 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHD---IVLIDIDKDICKKASAEI----------DALVINGDCTKI------KTLED 60 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHC----------SSEEEESCTTSH------HHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC---cceecCChhhhhhhhhhh----------hhhhccCcccch------hhhhh
Confidence 58999998 99999999999988764 555553 3344444322 346799999988 77777
Q ss_pred H-hcCccEEEEcC
Q 042694 189 I-AKEVDVIVNSA 200 (554)
Q Consensus 189 l-~~~vdiViH~A 200 (554)
+ .+++|.++-+.
T Consensus 61 ~~i~~a~~vv~~t 73 (132)
T d1lssa_ 61 AGIEDADMYIAVT 73 (132)
T ss_dssp TTTTTCSEEEECC
T ss_pred cChhhhhhhcccC
Confidence 6 46889888753
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=96.75 E-value=0.00023 Score=54.12 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=27.0
Q ss_pred ccccccCCchhHHHHHHHHHhhhhceee
Q 042694 35 IMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 35 ~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
.+|+++|+|||.+++|...|+++||+.+
T Consensus 33 ~~f~dlG~DSl~~~~l~~~l~~~~g~~l 60 (86)
T d2af8a_ 33 LRFEDIGYDSLALMETAARLESRYGVSI 60 (86)
T ss_dssp SSHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHcCCCHHHHHHHHHHHHHHHccCc
Confidence 3899999999999999999999999998
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.73 E-value=0.0077 Score=50.81 Aligned_cols=120 Identities=16% Similarity=0.069 Sum_probs=69.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCC-C-cc--EEEEEcc-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVP-D-VG--KIFIINA-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~-~-V~--~i~~~~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
++++|.|+||+|++|++++..|+.... + .. .+.+++. ...+.+...... ...........+.+.-
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------- 72 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME-LEDCAFPLLAGLEATD--------- 72 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH-HHTTTCTTEEEEEEES---------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh-hhccccccccccccCC---------
Confidence 356899999999999999999986431 0 10 2233332 222222211100 0011122232222220
Q ss_pred HHHHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 184 DLADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
+++ ..++++|+|+-+|+..+- .++..++...|+.-.+++.+...+......++.+
T Consensus 73 ~~~-~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~viv 128 (154)
T d1y7ta1 73 DPK-VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLV 128 (154)
T ss_dssp CHH-HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred chh-hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 222 345799999999987543 4567788999999999999998875332344433
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Probab=96.67 E-value=0.00041 Score=51.92 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=27.1
Q ss_pred cccccccCC-chhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGG-KTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG-~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+||+.|| |||.+++|...|+++||+.+
T Consensus 27 d~~l~e~gglDSl~~vel~~~ie~~fgi~i 56 (80)
T d1dv5a_ 27 DLNLFETGLLDSMGTVQLLLELQSQFGVDA 56 (80)
T ss_dssp SCCSSTTSSCCSHHHHHHHHHHTTTSCCCC
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHCCCC
Confidence 448999987 99999999999999999998
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Probab=96.60 E-value=0.0003 Score=54.64 Aligned_cols=29 Identities=7% Similarity=-0.075 Sum_probs=27.4
Q ss_pred cccccccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|+++|+|||.+++|...|+++||+.+
T Consensus 31 d~~f~dlG~DSl~~~el~~~le~~~gv~l 59 (95)
T d1nq4a_ 31 DVAFDALGYDSLALLNTVGRIERDYGVQL 59 (95)
T ss_dssp SSCHHHHTCCSHHHHHHHHHHHHHTCCCS
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHHhcCCC
Confidence 34899999999999999999999999998
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.59 E-value=0.0026 Score=53.18 Aligned_cols=114 Identities=12% Similarity=0.014 Sum_probs=70.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCch--hhhccCcEEEE-EccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSY--QAFMLSKLVPA-VGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~--~~~~~~kv~~v-~GDl~~~~lGLs~~~~ 186 (554)
++|.|.||+|.+|+.++..|+.++ -+..+++++.. ..++++....+.. ......++.+. .++ +++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~-l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~----------~d~ 69 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEP-FMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESD----------ENL 69 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCT-TCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEET----------TCG
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-cccccccccchhhhHhhhcccccchhcccccccCCccccCCc----------chH
Confidence 579999999999999999887754 45678887642 2222221110000 00112222221 111 122
Q ss_pred HHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEE
Q 042694 187 DVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFV 237 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v 237 (554)
+ -.+++|+|+-+|+..+- .++..++.+.|+.-.+++++...+. ..+.++
T Consensus 70 ~-~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~-~~~~ii 119 (145)
T d1hyea1 70 R-IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-CDTKIF 119 (145)
T ss_dssp G-GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CCCEEE
T ss_pred H-HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhcc-CCCeEE
Confidence 2 23689999999987543 4567788999999999999888875 334443
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.34 E-value=0.02 Score=47.35 Aligned_cols=113 Identities=11% Similarity=-0.067 Sum_probs=73.0
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-HHHHHHHcCCchh-hhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-FKCLKQTYGKSYQ-AFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-~~~l~~~~~~~~~-~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
+|-|+||+|.+|+.+...|+.++ -+..+++++... .+..+....+... .....+..+..+|..+
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~-l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~------------- 67 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRD-IADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYED------------- 67 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGG-------------
T ss_pred eEEEECCCCcHHHHHHHHHHhCC-CCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHH-------------
Confidence 68999999999999999998764 456888887321 1122111100000 0123344445555321
Q ss_pred hcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 190 AKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
++++|+|+-+|+..+- .+...++.+.|..=.+++.+..+++ +.+.++-+
T Consensus 68 ~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~iv 117 (142)
T d1o6za1 68 TAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLT 117 (142)
T ss_dssp GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEE
T ss_pred hhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEE
Confidence 3689999999886443 4467788999999999999988875 45554433
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.22 E-value=0.0085 Score=51.37 Aligned_cols=75 Identities=13% Similarity=0.259 Sum_probs=47.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
.|+|+|.|| |++|+++++.|.+.++ .|++.++. .++..+.... .........+...+ ......
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~---~V~v~dr~-~~~a~~l~~~------~~~~~~~~~~~~~~------~~~~~~ 64 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGI---KVTVACRT-LESAKKLSAG------VQHSTPISLDVNDD------AALDAE 64 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTC---EEEEEESC-HHHHHHHHTT------CTTEEEEECCTTCH------HHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECC-hHHHHHHHhc------ccccccccccccch------hhhHhh
Confidence 589999987 9999999999999876 45555543 1222222211 22333444444443 666666
Q ss_pred hcCccEEEEcCC
Q 042694 190 AKEVDVIVNSAA 201 (554)
Q Consensus 190 ~~~vdiViH~AA 201 (554)
....|+++.+..
T Consensus 65 i~~~~~~i~~~~ 76 (182)
T d1e5qa1 65 VAKHDLVISLIP 76 (182)
T ss_dssp HTTSSEEEECSC
T ss_pred hhccceeEeecc
Confidence 778888887643
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.14 E-value=0.016 Score=48.32 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=72.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCc--hhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKS--YQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~--~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.+++|-|.|| |.+|+.++..|+.++. +.+++++|... ++++....+. ........+....+|..+
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l-~~el~L~Di~~-~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~---------- 71 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGI-ADEIVLIDANE-SKAIGDAMDFNHGKVFAPKPVDIWHGDYDD---------- 71 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH-HHHHHHHHHHHHHTTSSSSCCEEEECCGGG----------
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEeecc-ccccchhccHhhCccccCCCeEEEECCHHH----------
Confidence 4678999997 9999999999988753 56888887421 1111111000 001122344445555432
Q ss_pred HHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 187 DVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
++++|+|+.+|+..+ ..+...++...|+.-.+++++...++ ..+.++-+
T Consensus 72 ---l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~iv 121 (148)
T d1ldna1 72 ---CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLV 121 (148)
T ss_dssp ---TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEE
T ss_pred ---hccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEE
Confidence 368999999988644 34455577888999899998888775 44444443
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.034 Score=45.75 Aligned_cols=114 Identities=14% Similarity=0.047 Sum_probs=73.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCch-hhhccCcEEEEEccCCCCCCCCCHHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSY-QAFMLSKLVPAVGNVCENNLGLEEDLADVI 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~-~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l 189 (554)
++|-|.|| |.+|+.+...|+.++ -+.+++++|... ++++....+.. ......+.....+|..+
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~-l~~el~L~Di~~-~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~------------- 64 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKG-FAREMVLIDVDK-KRAEGDALDLIHGTPFTRRANIYAGDYAD------------- 64 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSH-HHHHHHHHHHHHHGGGSCCCEEEECCGGG-------------
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCCEEEEEeccc-ccccchhccccccccccccccccCCcHHH-------------
Confidence 47889997 999999998888765 356888887421 12221110000 00123344445555321
Q ss_pred hcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 190 AKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 190 ~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++++|+|+-+|+..+- .+...++...|+.=.+.+.+...+. ..+.++.+-|
T Consensus 65 ~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvt 116 (140)
T d1a5za1 65 LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVT 116 (140)
T ss_dssp GTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred hcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeC
Confidence 3689999999987543 4556778888999889998888875 5566666544
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.0015 Score=49.23 Aligned_cols=27 Identities=4% Similarity=-0.088 Sum_probs=26.6
Q ss_pred cccccCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHCQGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+|+++|+|||.+++|...|+++||+.+
T Consensus 33 ~~~dlG~DSl~~v~l~~~ie~~f~i~i 59 (85)
T d1vkua_ 33 TFKELGFDSIDVIDLVMFFEDEFALRI 59 (85)
T ss_dssp BTTTTTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHhcCcchHHHHHHHHHHHHccCCC
Confidence 899999999999999999999999998
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.05 E-value=0.012 Score=49.66 Aligned_cols=111 Identities=15% Similarity=0.094 Sum_probs=64.8
Q ss_pred cCcEEEEecccccccHHHHHHHHhhC----CCccEEEEEcchh-HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTV----PDVGKIFIINAEL-FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEE 183 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~----~~V~~i~~~~~~~-~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~ 183 (554)
++++|.|+||+|.+|++++..|+... ...-.+++++... .+......-+ ...........+.+ .
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~-~~~~~~~~~~~~~~--~-------- 70 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLME-LQDCALPLLKDVIA--T-------- 70 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH-HHHTCCTTEEEEEE--E--------
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhh-hccccccccccccc--C--------
Confidence 35689999999999999999887532 1222566666322 1221111000 00001112221211 1
Q ss_pred HHHHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHc
Q 042694 184 DLADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQC 230 (554)
Q Consensus 184 ~~~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~ 230 (554)
.+.....+++|+|+-+|+..+- .+...++.+.|+.=.+++.+...+.
T Consensus 71 ~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~ 118 (154)
T d5mdha1 71 DKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118 (154)
T ss_dssp SCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhh
Confidence 1122345799999999987543 3455677889999899998877664
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=95.47 E-value=0.04 Score=45.68 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=69.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCc--hhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKS--YQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~--~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|-|.|| |.+|..++..|+.++ -+.+++++|... ++++....+. .............+|..+
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~-~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~------------ 66 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQG-VADDYVFIDANE-AKVKADQIDFQDAMANLEAHGNIVINDWAA------------ 66 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSH-HHHHHHHHHHHHHGGGSSSCCEEEESCGGG------------
T ss_pred CeEEEECc-CHHHHHHHHHHHhcC-CCceEEEEeccc-chhhhHHHhhhccccccCCccceeccCHHH------------
Confidence 68999995 999999999998865 356888887421 2222111000 001122233444555322
Q ss_pred HhcCccEEEEcCCCCCch-----hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 189 IAKEVDVIVNSAANTTFD-----ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~~-----~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++++|+|+-+|+..+.. ..-.++...|+.-.+++.+..++. ..+.++.+-|
T Consensus 67 -l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvt 122 (146)
T d1hyha1 67 -LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVIS 122 (146)
T ss_dssp -GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred -hccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEec
Confidence 37899999999875421 122345778998889998888874 5566655544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.45 E-value=0.11 Score=42.78 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=71.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCC--chhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGK--SYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~--~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
.+|-|.|+ |.+|++++..|+.++ -+..++++|... ++.+....+ ..............+|.. .
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~-l~~ElvL~D~~~-~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~------------~ 66 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRG-IAREIVLEDIAK-ERVEAEVLDMQHGSSFYPTVSIDGSDDPE------------I 66 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSH-HHHHHHHHHHHHTGGGSTTCEEEEESCGG------------G
T ss_pred CEEEEECC-CHHHHHHHHHHHhcC-CCcEEEEEEecc-ccchhHHHHHHhccccCCCceeecCCCHH------------H
Confidence 47899997 999999999998765 456888888432 111111000 001111222222233322 2
Q ss_pred HhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 189 IAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 189 l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
++++|+|+-+|+..+- .+...++...|+.=.+.+.+..+++ ..+.++-+-|
T Consensus 67 -~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvt 118 (143)
T d1llda1 67 -CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLIT 118 (143)
T ss_dssp -GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred -hhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeC
Confidence 4689999999997553 4566788999999999998888875 5555544433
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=95.30 E-value=0.03 Score=46.28 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=68.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh---HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL---FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~---~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
++|-|.|| |.+|+.+...|+.++ -+..++++|... .....+-... . ..........||..
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~-l~~el~L~D~~~~~~~g~a~Dl~~~--~-~~~~~~~~~~~~~~------------ 64 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQ-TANELVLIDVFKEKAIGEAMDINHG--L-PFMGQMSLYAGDYS------------ 64 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT-CSSEEEEECCC---CCHHHHHHTTS--C-CCTTCEEEC--CGG------------
T ss_pred CeEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeccCCccceeeeeeccC--c-ccCCCeeEeeCcHH------------
Confidence 36888997 999999999998764 466888887321 1111111100 0 12233444444322
Q ss_pred HHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 188 VIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
. ++++|+|+-+|+..+ ..+...++...|+.-.+++++...++ ..+.++.+-|
T Consensus 65 ~-~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~ivvt 117 (142)
T d1y6ja1 65 D-VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVS 117 (142)
T ss_dssp G-GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECS
T ss_pred H-hCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEEec
Confidence 2 378999999988654 34567788999999999999988875 4555544433
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=95.29 E-value=0.095 Score=43.03 Aligned_cols=113 Identities=9% Similarity=0.015 Sum_probs=69.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hH-HHH-HHHcCCchhhhccCcEEEE-EccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LF-KCL-KQTYGKSYQAFMLSKLVPA-VGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~-~~l-~~~~~~~~~~~~~~kv~~v-~GDl~~~~lGLs~~~~ 186 (554)
++|.|+|| |.+|+.++..|+.++ -+..+.++|.. .. ... ...... ......+.... .+|..
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~-l~~el~L~Di~~~~~~~~~~d~~~~--~~~~~~~~~i~~~~~~~----------- 65 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQ-LARELVLLDVVEGIPQGKALDMYES--GPVGLFDTKVTGSNDYA----------- 65 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSSSHHHHHHHHHHTT--HHHHTCCCEEEEESCGG-----------
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCceEEEeccccccchhhhhhhhcc--cchhcccceEEecCCHH-----------
Confidence 47899997 999999999888754 35688888732 11 111 111111 11112222222 23321
Q ss_pred HHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 187 DVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
-++++|+|+-+|+..+ ..+.-.++...|+.-.+++++...+. ..+.++.+-|
T Consensus 66 --~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvt 118 (142)
T d1guza1 66 --DTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVS 118 (142)
T ss_dssp --GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECC
T ss_pred --HhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEec
Confidence 1378999999998643 34456678889999999999888775 4555555443
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=95.28 E-value=0.021 Score=47.40 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=26.2
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIIN 144 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~ 144 (554)
|+|.|.|||||+|+.|++.|++. .+.+..++.+.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~s 35 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFS 35 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEec
Confidence 57999999999999999999863 23344666554
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=94.97 E-value=0.071 Score=44.76 Aligned_cols=115 Identities=12% Similarity=0.050 Sum_probs=73.3
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCC--chhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGK--SYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~--~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.+.++|-|.|+ |.+|+.+...|+.++ -+..++++|... ++.+.+..+ ............-.+|..+
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~-l~~ElvLiD~~~-~~a~g~alDl~h~~~~~~~~~~~~~~d~~~--------- 85 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGKS-LADELALVDVLE-DKLKGEMMDLQHGSLFLQTPKIVADKDYSV--------- 85 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSCH-HHHHHHHHHHHHTGGGCCCSEEEECSSGGG---------
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcC-CCcEEEEEEecc-chhHHHHHHHhccccccCCCeEEeccchhh---------
Confidence 44578999996 999999999998865 456888887421 111111100 0011122333344455432
Q ss_pred HHHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 186 ADVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
+++.|+|+..|+..+- .+...++.+.|+.-.++++...++. +.+.++-+
T Consensus 86 ----~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiiv 135 (160)
T d1i0za1 86 ----TANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIV 135 (160)
T ss_dssp ----GTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred ----cccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEE
Confidence 3789999999997543 3455677888999999999888875 45544433
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.0073 Score=50.35 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=28.5
Q ss_pred CcEEEEecccccccHHHHHHHHhh-CCCccEEEEEcc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRT-VPDVGKIFIINA 145 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~-~~~V~~i~~~~~ 145 (554)
|++|.|.||||++|+.+++.|++. ...+..++++.+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~s 37 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFST 37 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEES
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeec
Confidence 578999999999999999999873 224557777654
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=94.94 E-value=0.04 Score=46.12 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=69.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+.++|-|.|| |.+|+.+...|..++ +..++++|... .+........ ............ ++ .++
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~--~~el~L~D~~~~~~~g~a~Dl~~-~~~~~~~~~~~~-~~----------~~~ 70 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRE--LADVVLYDVVKGMPEGKALDLSH-VTSVVDTNVSVR-AE----------YSY 70 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHT--CCEEEEECSSSSHHHHHHHHHHH-HHHHTTCCCCEE-EE----------CSH
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCC--CceEEEEEeccccchhHHHHHhh-hccccCCeeEEe-cc----------Cch
Confidence 4578999997 999999987777654 45788876321 1111000000 000011111111 11 223
Q ss_pred HHHhcCccEEEEcCCCCCch------hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 187 DVIAKEVDVIVNSAANTTFD------ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~~------~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
+...++.|+|+-+|+..+-. ....++...|+.-.+++++...++ +.+.++.+-|
T Consensus 71 ~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivs 130 (154)
T d1pzga1 71 EAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVT 130 (154)
T ss_dssp HHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred hhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeC
Confidence 34457999999999865431 134567888999999999988885 5666666655
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.83 E-value=0.02 Score=46.58 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=48.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH-
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI- 189 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l- 189 (554)
|++.|.|+ |-+|+.+++.|.+.+.+| .++-.+.. ++++... ....++.||.+++ +.+..+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~v-vvid~d~~---~~~~~~~--------~~~~~~~gd~~~~------~~l~~a~ 61 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEV-LAVDINEE---KVNAYAS--------YATHAVIANATEE------NELLSLG 61 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCC-EEEESCHH---HHHHTTT--------TCSEEEECCTTCT------THHHHHT
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeE-EEecCcHH---HHHHHHH--------hCCcceeeecccc------hhhhccC
Confidence 46788886 999999999999988765 33333333 3332221 1235678999988 667665
Q ss_pred hcCccEEEEcCC
Q 042694 190 AKEVDVIVNSAA 201 (554)
Q Consensus 190 ~~~vdiViH~AA 201 (554)
.+++|.||=+..
T Consensus 62 i~~a~~vi~~~~ 73 (134)
T d2hmva1 62 IRNFEYVIVAIG 73 (134)
T ss_dssp GGGCSEEEECCC
T ss_pred CccccEEEEEcC
Confidence 568998876544
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.79 E-value=0.0066 Score=48.44 Aligned_cols=27 Identities=4% Similarity=-0.085 Sum_probs=25.8
Q ss_pred ccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+|+ ++|+|||.+++|...|+++||+.+
T Consensus 32 ~~~~dlG~DSl~~~~l~~~le~~f~i~i 59 (115)
T d1klpa_ 32 SFVDDLDIDSLSMVEIAVQTEDKYGVKI 59 (115)
T ss_dssp CTTTTTCSHHHHHHHHHHHHHHHTCCCC
T ss_pred chhhhcccchhHHHHHHHHHHHHHCCCC
Confidence 887 599999999999999999999998
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=94.77 E-value=0.0089 Score=51.48 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=26.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII 143 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~ 143 (554)
|.+|.|.|||||+|..|++-|.+ .|.+ .|..+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~-HP~~-ei~~l 32 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKN-HPEA-KITYL 32 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHH-CTTE-EEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHh-CCCc-eEEEe
Confidence 56899999999999999997765 6888 44444
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.72 E-value=0.0061 Score=50.81 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=26.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhC-CCccEEEEEc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTV-PDVGKIFIIN 144 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~-~~V~~i~~~~ 144 (554)
.++|.|.||||++|..|++-|.+.. |.+ ++..+.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~-~l~~~~ 36 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLH-RLHLLA 36 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCS-CEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCce-EEEEEe
Confidence 4689999999999999999886543 554 666554
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.57 E-value=0.19 Score=41.12 Aligned_cols=114 Identities=13% Similarity=-0.051 Sum_probs=70.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCc--hhhhccCcEE-EEEccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKS--YQAFMLSKLV-PAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~--~~~~~~~kv~-~v~GDl~~~~lGLs~~~~~ 187 (554)
|+|-|.|| |.+|+.+...|+.++ -+..++++|... ++.+...-+. .......... ...+|..
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~-~~~~g~alDl~~~~~~~~~~~~i~~~~d~~------------ 65 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAE-DLAVGEAMDLAHAAAGIDKYPKIVGGADYS------------ 65 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSH-HHHHHHHHHHHHHHHTTTCCCEEEEESCGG------------
T ss_pred CEEEEECc-CHHHHHHHHHHHhcC-cCceEEEEeccc-chhhHHHHHHhhhccccCCCCccccCCCHH------------
Confidence 57899997 999999999888765 567899887321 1111110000 0000111222 2233432
Q ss_pred HHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 188 VIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
-.++.|+|+-.|+..+ ......++...|..-.+.+.+..++. +.+.++.+-|
T Consensus 66 -~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvt 118 (142)
T d1ojua1 66 -LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT 118 (142)
T ss_dssp -GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred -HhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEec
Confidence 2478999999888544 34466778888999999999988875 4556665554
|
| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Probab=94.38 E-value=0.0098 Score=43.25 Aligned_cols=27 Identities=7% Similarity=-0.056 Sum_probs=25.9
Q ss_pred cccc-cCCchhHHHHHHHHHhhhhceee
Q 042694 36 MHCQ-GGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 36 ~Ff~-~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+|++ +|.|||.++.|...|+++||+.+
T Consensus 28 ~~~~DlG~DSl~~vel~~~le~~f~i~i 55 (74)
T d1f80d_ 28 SFKEDLGADXLDVVELVMELEDEFDMEI 55 (74)
T ss_dssp BHHHHSCCCHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHhcCccHhHHHHHHHHHHHHhCCCC
Confidence 8985 99999999999999999999998
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.19 E-value=0.017 Score=49.97 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=24.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDV 137 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V 137 (554)
|+|.|+||+|-+|+.|.+.|++.|++|
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V 27 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEI 27 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEE
Confidence 578999999999999999999999876
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.06 Score=44.67 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=25.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII 143 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~ 143 (554)
||+|.|.|+||.+|+..++-+-+ .++-=+|+.+
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~-~~d~f~v~~L 33 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRH-NPEHFRVVAL 33 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHH-CTTTEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHh-CCCCcEEEEE
Confidence 57899999999999999988765 4432266654
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=93.73 E-value=0.16 Score=41.67 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=64.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHH-HHHHcCCchhhhccCcEEEE-EccCCCCCCCCCHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKC-LKQTYGKSYQAFMLSKLVPA-VGNVCENNLGLEEDLA 186 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~-l~~~~~~~~~~~~~~kv~~v-~GDl~~~~lGLs~~~~ 186 (554)
++|-|.|+ |.+|+.+...|+.++ +..++++|... ... ....... .........+. .+|..+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~--l~dl~l~D~~~~~~~~~~~Dl~~~--~~~~~~~~~i~~~~d~~~---------- 66 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKE--LGDIVLLDIVEGVPQGKALDLYEA--SPIEGFDVRVTGTNNYAD---------- 66 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECSSSSHHHHHHHHHHTT--HHHHTCCCCEEEESCGGG----------
T ss_pred CeEEEECC-CHHHHHHHHHHHhCC--cceEEEEeeccccchhHHHHhhcc--ccccCCCCEEEecCcHHH----------
Confidence 57999996 999999998887754 44788887311 111 1111111 00111122222 334332
Q ss_pred HHHhcCccEEEEcCCCCC-chhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 187 DVIAKEVDVIVNSAANTT-FDERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
+++.|+|+-+|+..+ ..+...++...|+.-.+++++...+. +.+.++-+-|
T Consensus 67 ---~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvt 118 (142)
T d1uxja1 67 ---TANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVN 118 (142)
T ss_dssp ---GTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECS
T ss_pred ---hcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeC
Confidence 368999999998754 34566677889999888898888774 5566655544
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=93.71 E-value=0.019 Score=49.76 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=26.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII 143 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~ 143 (554)
..+|.|.|||||.|..|++-|.+ .|.+ .+..+
T Consensus 5 kikVaIlGATGyvG~elirLL~~-HP~~-ei~~l 36 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLAN-HPQF-RIKVM 36 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTT-CSSE-EEEEE
T ss_pred ccEEEEECcccHHHHHHHHHHHh-CCCc-eEEEE
Confidence 45899999999999999998887 6888 44444
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=93.39 E-value=0.12 Score=42.77 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=25.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII 143 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~ 143 (554)
+|+|.|.|+||.+|+..++-+-+ .++--+|+.+
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~-~~d~f~v~~l 34 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIER-NLDRYQVIAL 34 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHH-TGGGEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHc-CCCCcEEEEE
Confidence 68999999999999999988765 4432266644
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.034 Score=49.68 Aligned_cols=80 Identities=13% Similarity=0.151 Sum_probs=47.5
Q ss_pred ccCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEE
Q 042694 108 LKAKNFFVTGA----------------TGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAV 171 (554)
Q Consensus 108 ~~~~~VlITGa----------------TGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~ 171 (554)
++|++||||+| ||-+|..|.+.+.+.|.+| .++..+.. . . ....+..+.
T Consensus 4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V---~li~g~~~------~-~-----~p~~~~~~~ 68 (223)
T d1u7za_ 4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANV---TLVSGPVS------L-P-----TPPFVKRVD 68 (223)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEE---EEEECSCC------C-C-----CCTTEEEEE
T ss_pred cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCch---hhhhcccc------c-C-----cccccccce
Confidence 46778888755 7899999999999999866 22222110 0 0 112333333
Q ss_pred ccCCCCCCCCCHHHHHHHhcCccEEEEcCCCCCch
Q 042694 172 GNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFD 206 (554)
Q Consensus 172 GDl~~~~lGLs~~~~~~l~~~vdiViH~AA~v~~~ 206 (554)
..=.+.. .+.......+.|++|++||...|.
T Consensus 69 ~~t~~~m----~~~~~~~~~~~D~~i~aAAvsDf~ 99 (223)
T d1u7za_ 69 VMTALEM----EAAVNASVQQQNIFIGCAAVADYR 99 (223)
T ss_dssp CCSHHHH----HHHHHHHGGGCSEEEECCBCCSEE
T ss_pred ehhhHHH----HHHHHhhhccceeEeeeechhhhh
Confidence 2211100 123334456899999999988773
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=93.32 E-value=0.028 Score=48.48 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=25.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEE
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIF 141 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~ 141 (554)
|++|.|.|||||.|..|++-|.. .|++.-.+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~-HP~~ei~~ 31 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNR-HPHMTITA 31 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHH-CTTEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHh-CCCCceEe
Confidence 57899999999999999997775 67874333
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=91.48 E-value=0.13 Score=42.59 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=26.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCc
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDV 137 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V 137 (554)
..++|.|.||+|.+|+.+.+.|.+.|++|
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V 36 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPI 36 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCE
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCc
Confidence 46799999999999999999999999876
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.45 E-value=0.71 Score=37.85 Aligned_cols=113 Identities=14% Similarity=0.143 Sum_probs=67.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEE-ccCCCCCCCCCHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAV-GNVCENNLGLEEDLAD 187 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~-GDl~~~~lGLs~~~~~ 187 (554)
.+|-|.|+ |.+|+.+...|+.+ .+..+.++|.. ..+........ .......+..... +|..
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~--~l~el~L~Di~~~~~~g~a~Dl~~-~~~~~~~~~~v~~~~~~~------------ 67 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQK--NLGDVVLFDIVKNMPHGKALDTSH-TNVMAYSNCKVSGSNTYD------------ 67 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHHHHT-HHHHHTCCCCEEEECCGG------------
T ss_pred CeEEEECC-CHHHHHHHHHHHhC--CCCeEEEEeccCCcceeeecchhh-hccccCCCcEEEeccccc------------
Confidence 47999996 99999999766654 36688888731 11111111100 0111122222232 2221
Q ss_pred HHhcCccEEEEcCCCCCch------hhHHHHHHHhchHHHHHHHHHHHcCCCceEEEEee
Q 042694 188 VIAKEVDVIVNSAANTTFD------ERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQVST 241 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v~~~------~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~vST 241 (554)
-.++.|+|+-+|+..+.. .....+...|+.-.+++++..++. ..+.++.+-|
T Consensus 68 -~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvt 125 (150)
T d1t2da1 68 -DLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 125 (150)
T ss_dssp -GGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred -ccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence 236899999999965431 124567888999999999888875 5566655544
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=91.45 E-value=0.26 Score=41.06 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=50.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+|.|+ |=+|+.+++.|...+. +++++.++. ....+.+..+. ..+ ++ ++
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~--~~i~v~nRt~~ka~~l~~~~~~----------~~~--~~---------~~ 77 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGV--RAVLVANRTYERAVELARDLGG----------EAV--RF---------DE 77 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCC--SEEEEECSSHHHHHHHHHHHTC----------EEC--CG---------GG
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCC--cEEEEEcCcHHHHHHHHHhhhc----------ccc--cc---------hh
Confidence 57899999997 9999999999998754 577777653 22223332221 111 11 45
Q ss_pred HHHHhcCccEEEEcCCCCCc
Q 042694 186 ADVIAKEVDVIVNSAANTTF 205 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v~~ 205 (554)
+.....++|+||.+.+....
T Consensus 78 ~~~~l~~~Divi~atss~~~ 97 (159)
T d1gpja2 78 LVDHLARSDVVVSATAAPHP 97 (159)
T ss_dssp HHHHHHTCSEEEECCSSSSC
T ss_pred HHHHhccCCEEEEecCCCCc
Confidence 55666899999999886554
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.44 E-value=0.13 Score=43.75 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=44.6
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+|.+|||+||+|-+|...+.-+...+.. .|...+++ ..+.+++ .+ .+.+ + |-.++++ .+...
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~--vi~~~~~~~~~~~l~~-~G-------a~~v--i--~~~~~~~---~~~v~ 87 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGAR--IYTTAGSDAKREMLSR-LG-------VEYV--G--DSRSVDF---ADEIL 87 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCE--EEEEESSHHHHHHHHT-TC-------CSEE--E--ETTCSTH---HHHHH
T ss_pred CCCEEEEECCCCCcccccchhhcccccc--ceeeeccccccccccc-cc-------cccc--c--cCCccCH---HHHHH
Confidence 5789999999999999999877776642 23333332 2333332 21 1122 2 3333311 13334
Q ss_pred HHh--cCccEEEEcCC
Q 042694 188 VIA--KEVDVIVNSAA 201 (554)
Q Consensus 188 ~l~--~~vdiViH~AA 201 (554)
++. +++|+||.+.+
T Consensus 88 ~~t~~~g~d~v~d~~g 103 (183)
T d1pqwa_ 88 ELTDGYGVDVVLNSLA 103 (183)
T ss_dssp HHTTTCCEEEEEECCC
T ss_pred HHhCCCCEEEEEeccc
Confidence 443 36999999987
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=91.40 E-value=0.22 Score=42.48 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=54.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch--hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE--LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~--~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+|.|+ |-.|+.++..|...+ +++|++.++. ..+++...... +.. . ........|+.+. +.
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g--~~~i~i~nR~~~~~~~~~~l~~~-~~~-~-~~~~~~~~~~~~~------~~ 83 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEG--LKEIKLFNRRDEFFDKALAFAQR-VNE-N-TDCVVTVTDLADQ------QA 83 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEECSSTTHHHHHHHHHH-HHH-H-SSCEEEEEETTCH------HH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcC--CceEeeeccchHHHHHHHHHHHH-HHh-h-cCcceEeeecccc------cc
Confidence 57899999997 668999999999864 5688887642 23333321110 000 1 1223445677665 66
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
+.....++|+||++...
T Consensus 84 ~~~~~~~~diiIN~Tp~ 100 (182)
T d1vi2a1 84 FAEALASADILTNGTKV 100 (182)
T ss_dssp HHHHHHTCSEEEECSST
T ss_pred hhhhhcccceeccccCC
Confidence 77777899999999764
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.39 E-value=0.27 Score=40.54 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=49.8
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEcch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHHH-
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADVI- 189 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l- 189 (554)
.|+|.|. |=+|..++++|.+.+.+| .|+..+.+ ....+.+. ...++.++.||.+++ +.++..
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v-~vId~d~~~~~~~~~~~--------~~~~~~vi~Gd~~d~------~~L~~a~ 68 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNV-TVISNLPEDDIKQLEQR--------LGDNADVIPGDSNDS------SVLKKAG 68 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCE-EEEECCCHHHHHHHHHH--------HCTTCEEEESCTTSH------HHHHHHT
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCE-EEEeccchhHHHHHHHh--------hcCCcEEEEccCcch------HHHHHhc
Confidence 5899997 889999999999987654 22222222 12223222 234678899999988 776654
Q ss_pred hcCccEEEEcCC
Q 042694 190 AKEVDVIVNSAA 201 (554)
Q Consensus 190 ~~~vdiViH~AA 201 (554)
.++++.|+=+..
T Consensus 69 i~~a~~vi~~~~ 80 (153)
T d1id1a_ 69 IDRCRAILALSD 80 (153)
T ss_dssp TTTCSEEEECSS
T ss_pred cccCCEEEEccc
Confidence 358899987654
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.20 E-value=0.23 Score=41.37 Aligned_cols=114 Identities=11% Similarity=-0.009 Sum_probs=68.3
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCc--hhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKS--YQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~--~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
+..+|.|.|+ |.+|..++..|+.++ -+..++++|... ++.+....+. .............+|..+
T Consensus 18 ~~~KI~IIGa-G~VG~~~A~~l~~~~-l~~elvL~D~~~-~~a~g~alDl~~~~~~~~~~~~~~~~d~~~---------- 84 (159)
T d2ldxa1 18 SRCKITVVGV-GDVGMACAISILLKG-LADELALVDADT-DKLRGEALDLQHGSLFLSTPKIVFGKDYNV---------- 84 (159)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTT-SCSEEEEECSCH-HHHHHHHHHHHHTTTTCSCCEEEEESSGGG----------
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCc-hhhhccHHHHhCcchhcCCCeEEeccchhh----------
Confidence 3457999996 999999999988764 456889888431 1111111000 000112233333444322
Q ss_pred HHHhcCccEEEEcCCCCCc-hhhHHHHHHHhchHHHHHHHHHHHcCCCceEEEE
Q 042694 187 DVIAKEVDVIVNSAANTTF-DERYDIAIDINTRGPCRLMEFAKQCNKLKLFVQV 239 (554)
Q Consensus 187 ~~l~~~vdiViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~v~v 239 (554)
+++.|+|+-+|+..+- .+...++.+.|+.-.++++...++. +.+.++.+
T Consensus 85 ---~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~iviv 134 (159)
T d2ldxa1 85 ---SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIV 134 (159)
T ss_dssp ---GTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEE
T ss_pred ---hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEE
Confidence 3789999999887543 3444466778888888888777664 44444433
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.2 Score=42.36 Aligned_cols=76 Identities=24% Similarity=0.170 Sum_probs=44.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-+|.+|||+||+|-+|...+.-+...|. ++++. +++ ..+.+++ .+. +.+ + |..++++ .+.
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~---~vi~~~~~~~~~~~~~~-~Ga-------~~v--i--~~~~~~~---~~~ 88 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGL---KILGTAGTEEGQKIVLQ-NGA-------HEV--F--NHREVNY---IDK 88 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHH-TTC-------SEE--E--ETTSTTH---HHH
T ss_pred CCCCEEEEEeccccccccccccccccCc---ccccccccccccccccc-cCc-------ccc--c--ccccccH---HHH
Confidence 3678999999999999988887766553 45544 333 2233332 221 122 2 4444421 133
Q ss_pred HHHHh--cCccEEEEcCC
Q 042694 186 ADVIA--KEVDVIVNSAA 201 (554)
Q Consensus 186 ~~~l~--~~vdiViH~AA 201 (554)
...+. +.+|+||.+.+
T Consensus 89 i~~~t~~~g~d~v~d~~g 106 (174)
T d1yb5a2 89 IKKYVGEKGIDIIIEMLA 106 (174)
T ss_dssp HHHHHCTTCEEEEEESCH
T ss_pred hhhhhccCCceEEeeccc
Confidence 33333 26999999865
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=90.89 E-value=0.61 Score=41.66 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=31.0
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
++-.+..+|+|.|+ |-+|++++..|.+.| |+++.++|.
T Consensus 25 Q~kL~~~~VliiG~-GglGs~va~~La~~G--vg~i~lvD~ 62 (247)
T d1jw9b_ 25 QEALKDSRVLIVGL-GGLGCAASQYLASAG--VGNLTLLDF 62 (247)
T ss_dssp HHHHHHCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECC
T ss_pred HHHHhCCCEEEECC-CHHHHHHHHHHHHcC--CCeEEEECC
Confidence 34467889999997 559999999999976 679998763
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.65 E-value=0.097 Score=43.63 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=25.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
=+|.|.|||||+|..|++-|.+....+..+..+.+
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s 36 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS 36 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecc
Confidence 37999999999999999866553213446666654
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.16 Score=36.66 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=30.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc-chhHHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN-AELFKCLKQ 153 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~-~~~~~~l~~ 153 (554)
.++.+|||+||+|-+|...+.-+...+.+| |.... .+..+.+++
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~V--i~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLGYQV--VAVSGRESTHEYLKS 74 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTCCE--EEEESCGGGHHHHHH
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcCCeE--EEEECCHHHHHHHHH
Confidence 357899999999999999998766666543 22332 344555554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=90.54 E-value=0.35 Score=41.03 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=26.5
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
-+|.+|||+||+|-+|...+.-....+. +|+...
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga---~vi~~~ 61 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGC---KVVGAA 61 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCC---EEEEeC
Confidence 4688999999999999998877766553 566553
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.47 E-value=0.27 Score=41.81 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=30.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc-chhHHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN-AELFKCLKQ 153 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~-~~~~~~l~~ 153 (554)
-+|.+|||+||+|=+|...+.-....|-.| |.... ....+.+++
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~V--iat~~s~~k~~~~~~ 74 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTV--EASTGKAAEHDYLRV 74 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCE--EEEESCTTCHHHHHH
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCce--EEecCchHHHHHHHh
Confidence 357889999999999999998776666543 33333 333445544
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=90.14 E-value=0.21 Score=42.23 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=43.1
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-cch-hHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NAE-LFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~~-~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-+|.+|+|+||+|=+|...+.-+...|. +|+.. +++ ..+.+++ .+. +.+ + |..+. ..
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~---~vi~~~~~~~~~~~~~~-lGa-------~~~--i--~~~~~------~~ 84 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGL---RVLAAASRPEKLALPLA-LGA-------EEA--A--TYAEV------PE 84 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSGGGSHHHHH-TTC-------SEE--E--EGGGH------HH
T ss_pred CCCCEEEEEeccccchhhhhhhhccccc---ccccccccccccccccc-ccc-------cee--e--ehhhh------hh
Confidence 4688999999999999998887766553 45544 332 2344433 221 111 1 22221 22
Q ss_pred HHHHhcCccEEEEcCC
Q 042694 186 ADVIAKEVDVIVNSAA 201 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA 201 (554)
...-.+++|+||.+.+
T Consensus 85 ~~~~~~g~D~v~d~~G 100 (171)
T d1iz0a2 85 RAKAWGGLDLVLEVRG 100 (171)
T ss_dssp HHHHTTSEEEEEECSC
T ss_pred hhhccccccccccccc
Confidence 2223358999999876
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.74 E-value=0.32 Score=41.03 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=47.2
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc-c-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHH
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN-A-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLA 186 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~-~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~ 186 (554)
.|++|+|+||+|-+|..++.-....+. +|+..+ + ...+.+++. +. +. ++ |-.++++ .+.+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga---~Vi~~~~s~~k~~~~~~l-Ga-------~~--vi--~~~~~d~---~~~v 89 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGA---KLIGTVGTAQKAQSALKA-GA-------WQ--VI--NYREEDL---VERL 89 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTC---EEEEEESSHHHHHHHHHH-TC-------SE--EE--ETTTSCH---HHHH
T ss_pred CCCEEEEEccccccchHHHHHHHHhCC---eEeecccchHHHHHHHhc-CC-------eE--EE--ECCCCCH---HHHH
Confidence 478999999999999999988777664 555553 3 223444432 21 11 22 4444422 2444
Q ss_pred HHHhc--CccEEEEcCCC
Q 042694 187 DVIAK--EVDVIVNSAAN 202 (554)
Q Consensus 187 ~~l~~--~vdiViH~AA~ 202 (554)
.++.. .+|+|+.+.+.
T Consensus 90 ~~~t~g~g~d~v~d~~g~ 107 (179)
T d1qora2 90 KEITGGKKVRVVYDSVGR 107 (179)
T ss_dssp HHHTTTCCEEEEEECSCG
T ss_pred HHHhCCCCeEEEEeCccH
Confidence 55543 68999998864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.16 E-value=0.52 Score=39.62 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=31.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQT 154 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~ 154 (554)
|+|.|.|| |-+|..+...|.++|++| .+|..+....+.+++.
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V-~~~~r~~~~~~~~~~~ 43 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSV-LAWDIDAQRIKEIQDR 43 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEE-EEECSCHHHHHHHHHH
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEE-EEEECCHHHHHHHHHc
Confidence 78999997 999999999999998765 4444334445555544
|
| >d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Escherichia coli [TaxId: 562]
Probab=88.86 E-value=0.12 Score=37.37 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=26.5
Q ss_pred ccccc-ccCCchhHHHHHHHHHhhhhceee
Q 042694 34 SIMHC-QGGGKTTRSSGVSSALKERSTVTD 62 (554)
Q Consensus 34 ~~~Ff-~~GG~Sl~a~~l~~~l~~~~~v~~ 62 (554)
+.+|. ++|-|||..+.|...|.++||+.+
T Consensus 25 ~~~l~~dLg~DSl~~~el~~~iE~~f~i~i 54 (77)
T d1t8ka_ 25 NASFVEDLGADSLDTVELVMALEEEFDTEI 54 (77)
T ss_dssp TCBTTTTTCCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCcchhccccchhHHHHHHHHHHHHhCCCC
Confidence 33887 599999999999999999999998
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.83 E-value=0.69 Score=45.03 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=52.1
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh-------------------------HHHHHHHcCCch
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL-------------------------FKCLKQTYGKSY 159 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~-------------------------~~~l~~~~~~~~ 159 (554)
+...++.+|||.|+.| +|..+++.|...| |++|.++|... .+++++..+
T Consensus 32 ~~~l~~~kVlvvG~Gg-lG~ei~k~L~~~G--vg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np--- 105 (426)
T d1yovb1 32 QFLLDTCKVLVIGAGG-LGCELLKNLALSG--FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP--- 105 (426)
T ss_dssp HHHHHHCCEEEECSST-THHHHHHHHHTTT--CCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHST---
T ss_pred HHHHhcCeEEEECCCH-HHHHHHHHHHHcC--CCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCC---
Confidence 3446678999999966 9999999999865 56777665311 122222221
Q ss_pred hhhccCcEEEEEccCCCCCCCCCHHHHHHHhcCccEEEEcCC
Q 042694 160 QAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAA 201 (554)
Q Consensus 160 ~~~~~~kv~~v~GDl~~~~lGLs~~~~~~l~~~vdiViH~AA 201 (554)
.-+|.++..++.+. . ..+.++.|+|+.+.-
T Consensus 106 ----~v~i~~~~~~i~~~------~--~~~~~~~DlVi~~~D 135 (426)
T d1yovb1 106 ----NCNVVPHFNKIQDF------N--DTFYRQFHIIVCGLD 135 (426)
T ss_dssp ----TCCCEEECSCGGGB------C--HHHHTTCSEEEECCS
T ss_pred ----CCceEeeeccccch------H--HHHHHhcchheeccC
Confidence 23677777777654 1 246789999998743
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=88.77 E-value=0.11 Score=39.03 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=44.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
+++|+|+|.|. |--|..+++.|.+++.+| ++.|........+ .....+....+... +.
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v---~~~D~~~~~~~~~--------~~~~~~~~~~~~~~-------~~--- 60 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARGVTP---RVMDTRMTPPGLD--------KLPEAVERHTGSLN-------DE--- 60 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCCC---EEEESSSSCTTGG--------GSCTTSCEEESBCC-------HH---
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCCCEE---EEeeCCcCchhHH--------HHhhccceeecccc-------hh---
Confidence 68999999998 667999999999988655 4444321111111 11223334444421 12
Q ss_pred HHhcCccEEEEcCCCC
Q 042694 188 VIAKEVDVIVNSAANT 203 (554)
Q Consensus 188 ~l~~~vdiViH~AA~v 203 (554)
...++|.||-+-|..
T Consensus 61 -~~~~~d~vi~SPGi~ 75 (93)
T d2jfga1 61 -WLMAADLIVASPGIA 75 (93)
T ss_dssp -HHHHCSEEEECTTSC
T ss_pred -hhccCCEEEECCCCC
Confidence 235789999998864
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.09 E-value=0.49 Score=40.33 Aligned_cols=75 Identities=19% Similarity=0.130 Sum_probs=43.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEE-cc-hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-NA-ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~-~~-~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
++|||+||+|=+|...++-....+.. +|+.. .+ +....+.+..+. + ...|..++++ .+..+.
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~--~vi~~~~~~e~~~~l~~~~ga-------d----~vi~~~~~~~---~~~~~~ 95 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCS--RVVGICGTQEKCLFLTSELGF-------D----AAVNYKTGNV---AEQLRE 95 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCS--EEEEEESSHHHHHHHHHHSCC-------S----EEEETTSSCH---HHHHHH
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCc--ceecccchHHHHhhhhhcccc-------e----EEeeccchhH---HHHHHH
Confidence 78999999999999988776655543 45543 33 223334433332 1 1224444421 233344
Q ss_pred Hh-cCccEEEEcCC
Q 042694 189 IA-KEVDVIVNSAA 201 (554)
Q Consensus 189 l~-~~vdiViH~AA 201 (554)
+. +++|+||.+.+
T Consensus 96 ~~~~GvDvv~D~vG 109 (187)
T d1vj1a2 96 ACPGGVDVYFDNVG 109 (187)
T ss_dssp HCTTCEEEEEESSC
T ss_pred HhccCceEEEecCC
Confidence 33 36999999876
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=88.04 E-value=0.52 Score=37.56 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=20.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCC
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVP 135 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~ 135 (554)
++|.|.|++|=+|+.+.+.+.+.+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~ 25 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGH 25 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCC
Confidence 4799999999999998877666544
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=87.95 E-value=0.74 Score=35.56 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=46.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLAD 187 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~ 187 (554)
.+|++|+|.|+ |-+|..-++.|++.+.+ |.+++....+.+.... ...++..+..+....
T Consensus 10 l~~k~vlVvG~-G~va~~ka~~ll~~ga~---v~v~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~---------- 68 (113)
T d1pjqa1 10 LRDRDCLIVGG-GDVAERKARLLLEAGAR---LTVNALTFIPQFTVWA-------NEGMLTLVEGPFDET---------- 68 (113)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBE---EEEEESSCCHHHHHHH-------TTTSCEEEESSCCGG----------
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCCe---EEEEeccCChHHHHHH-------hcCCceeeccCCCHH----------
Confidence 57899999995 88999999999998754 4444432223333222 124666777666543
Q ss_pred HHhcCccEEEEcCC
Q 042694 188 VIAKEVDVIVNSAA 201 (554)
Q Consensus 188 ~l~~~vdiViH~AA 201 (554)
.+++++.|+-+..
T Consensus 69 -dl~~~~lv~~at~ 81 (113)
T d1pjqa1 69 -LLDSCWLAIAATD 81 (113)
T ss_dssp -GGTTCSEEEECCS
T ss_pred -HhCCCcEEeecCC
Confidence 1357888886643
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.03 E-value=0.51 Score=40.00 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=45.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEc--chhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN--AELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~--~~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|.|.|| |-.|..|...|.+.+++| .++..+ .+..+.+.+............ ..++.. .++.+.
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V-~l~~r~~~~~~~~~i~~~~~~~~~~~~~~-----~~~i~~------~~~~~~ 67 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEV-RIWGTEFDTEILKSISAGREHPRLGVKLN-----GVEIFW------PEQLEK 67 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEE-EEECCGGGHHHHHHHHTTCCBTTTTBCCC-----SEEEEC------GGGHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEE-EEEEecccHHHHHHHhhhhhhhhhcchhc-----cccccc------cccHHH
Confidence 57999996 999999999999988765 444332 222333433221110000000 111111 266777
Q ss_pred HhcCccEEEEcCCC
Q 042694 189 IAKEVDVIVNSAAN 202 (554)
Q Consensus 189 l~~~vdiViH~AA~ 202 (554)
..+++|+|+-+-..
T Consensus 68 ~~~~ad~Ii~avps 81 (180)
T d1txga2 68 CLENAEVVLLGVST 81 (180)
T ss_dssp HHTTCSEEEECSCG
T ss_pred HHhccchhhcccch
Confidence 78899999987543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=85.52 E-value=0.16 Score=43.90 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=50.8
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchhHHHHHHHcCC--chhhh-ccCcEEEEEccCCCCCCCCCHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGK--SYQAF-MLSKLVPAVGNVCENNLGLEED 184 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~~~~l~~~~~~--~~~~~-~~~kv~~v~GDl~~~~lGLs~~ 184 (554)
..+++|.|.|| |-.|.++...|.+.+++| .++..+.+..+.+.+...+ +.+.. ..+++. +. .
T Consensus 5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~V-~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~-~t------------~ 69 (189)
T d1n1ea2 5 LYLNKAVVFGS-GAFGTALAMVLSKKCREV-CVWHMNEEEVRLVNEKRENVLFLKGVQLASNIT-FT------------S 69 (189)
T ss_dssp CCEEEEEEECC-SHHHHHHHHHHHTTEEEE-EEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEE-EE------------S
T ss_pred ceeceEEEECC-CHHHHHHHHHHHHcCCeE-EEEEecHHHHHHHhhcccccccccccccccccc-cc------------h
Confidence 34678999995 999999999999887766 5655556666666655422 11111 112222 11 3
Q ss_pred HHHHHhcCccEEEEcCC
Q 042694 185 LADVIAKEVDVIVNSAA 201 (554)
Q Consensus 185 ~~~~l~~~vdiViH~AA 201 (554)
+++...+++|+|+-+-.
T Consensus 70 ~l~~a~~~ad~iiiavP 86 (189)
T d1n1ea2 70 DVEKAYNGAEIILFVIP 86 (189)
T ss_dssp CHHHHHTTCSCEEECSC
T ss_pred hhhhccCCCCEEEEcCc
Confidence 45666788999998754
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=84.59 E-value=0.43 Score=39.69 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=29.7
Q ss_pred cCcEEEEecccccccHHHHHHHHhhCCCccEEEEEc
Q 042694 109 KAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIIN 144 (554)
Q Consensus 109 ~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~ 144 (554)
+||+|+|.|| |+.|-.++..|.+.++++ +|++++
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~-~Vtlie 34 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSI-EVTLIE 34 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTS-EEEEEC
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCC-cEEEEE
Confidence 4799999996 999999999999988887 677765
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.50 E-value=0.23 Score=43.25 Aligned_cols=31 Identities=10% Similarity=0.191 Sum_probs=25.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
|+|.|.| .||+|..++..|.+.|++ |+++|.
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~---V~g~D~ 31 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHE---VIGVDV 31 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCE---EEEECS
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCc---EEEEeC
Confidence 5788996 699999999999998874 566653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=84.37 E-value=0.94 Score=37.61 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=43.2
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
-.|.+|+|.|+ |-+|...+.-+...+. +++..+. ...+..++ .+. +.+ + |-.++ +.
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga---~~i~~~~~~~~~~~a~~-lGa-------d~~--i--~~~~~------~~ 86 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGA---HVVAFTTSEAKREAAKA-LGA-------DEV--V--NSRNA------DE 86 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSGGGHHHHHH-HTC-------SEE--E--ETTCH------HH
T ss_pred CCCCEEEEecc-chHHHHHHHHhhcccc---cchhhccchhHHHHHhc-cCC-------cEE--E--ECchh------hH
Confidence 46889999997 7799888766655443 3334432 22333333 221 111 1 33333 44
Q ss_pred HHHHhcCccEEEEcCCCC
Q 042694 186 ADVIAKEVDVIVNSAANT 203 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~v 203 (554)
.....+++|+||.+.+..
T Consensus 87 ~~~~~~~~D~vid~~g~~ 104 (168)
T d1uufa2 87 MAAHLKSFDFILNTVAAP 104 (168)
T ss_dssp HHTTTTCEEEEEECCSSC
T ss_pred HHHhcCCCceeeeeeecc
Confidence 555556899999998753
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=83.42 E-value=1.2 Score=37.11 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=44.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcchh--HHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHH
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAEL--FKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDL 185 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~~--~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~ 185 (554)
.++++|+|.|+ |-.|+.++..|.+ +. ++|+++++.. .+.+.+... ...++..+.-|-..
T Consensus 16 ~~~k~vlIlGa-GGaarai~~aL~~-~~--~~i~I~nR~~~~a~~l~~~~~------~~~~~~~~~~~~~~--------- 76 (171)
T d1p77a1 16 RPNQHVLILGA-GGATKGVLLPLLQ-AQ--QNIVLANRTFSKTKELAERFQ------PYGNIQAVSMDSIP--------- 76 (171)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHH-TT--CEEEEEESSHHHHHHHHHHHG------GGSCEEEEEGGGCC---------
T ss_pred CCCCEEEEECC-cHHHHHHHHHHcc-cC--ceeeeccchHHHHHHHHHHHh------hccccchhhhcccc---------
Confidence 47899999997 4469999999986 33 4788876542 222322221 12244444443221
Q ss_pred HHHHhcCccEEEEcCCC
Q 042694 186 ADVIAKEVDVIVNSAAN 202 (554)
Q Consensus 186 ~~~l~~~vdiViH~AA~ 202 (554)
..++|+||++...
T Consensus 77 ----~~~~diiIN~tp~ 89 (171)
T d1p77a1 77 ----LQTYDLVINATSA 89 (171)
T ss_dssp ----CSCCSEEEECCCC
T ss_pred ----ccccceeeecccc
Confidence 2579999999664
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.45 E-value=1.1 Score=35.88 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.0
Q ss_pred EEEEecccccccHHHHHHHHhhCCCc
Q 042694 112 NFFVTGATGFLAKVLIEKILRTVPDV 137 (554)
Q Consensus 112 ~VlITGaTGFlG~~Ll~~LL~~~~~V 137 (554)
+|.|.|++|=+|+.+++.+.+. ++.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-~~~ 25 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-DDL 25 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-TTS
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCC
Confidence 6899999999999999988763 444
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=82.03 E-value=1.4 Score=36.26 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=24.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
|+|.|.|+ |.+|+.+.+.|.+.+++ |+..+.
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~---V~~~d~ 31 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHY---LIGVSR 31 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE---EEEECS
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCE---EEEEEC
Confidence 57889975 99999999999998874 555554
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=81.93 E-value=0.49 Score=39.47 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCc
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDV 137 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V 137 (554)
..+|.|.|++|=+|+.+++.+++. +++
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~-~~~ 30 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALAL-EGV 30 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHS-TTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CCC
Confidence 458999999999999999999874 454
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.66 E-value=2.9 Score=34.39 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=28.0
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
-.+.+|+|.||+|-+|...+..+...+. .+|+..+.
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~--~~V~~~~~ 61 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDV 61 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEES
T ss_pred CCCCEEEEEeccccceeeeeeccccccc--cccccccc
Confidence 3578999999999999888877776654 36777764
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=81.14 E-value=1.4 Score=36.59 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=27.9
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE 146 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~ 146 (554)
.++|+|+|.|| |=.++.++..|.+.+ + +|+++++.
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g--~-~i~I~nRt 50 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLD--C-AVTITNRT 50 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT--C-EEEEECSS
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccc--e-EEEeccch
Confidence 46899999997 557999999998865 3 58877653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=81.10 E-value=1.4 Score=36.99 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=26.6
Q ss_pred ccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 108 LKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 108 ~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
-+|.+|+|+|| |-+|...+.-+...|. ++|+..+.
T Consensus 27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga--~~Vi~~~~ 61 (182)
T d1vj0a2 27 FAGKTVVIQGA-GPLGLFGVVIARSLGA--ENVIVIAG 61 (182)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTB--SEEEEEES
T ss_pred CCCCEEEEECC-Cccchhheeccccccc--cccccccc
Confidence 35789999997 8899888877766554 47777754
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=80.73 E-value=0.72 Score=38.35 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=29.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEcch
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE 146 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~~ 146 (554)
|++|+|.| .|.+|..+++.|.+.++.+ +|+..+..
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~-~I~~~D~~ 35 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKG-KIYGYDIN 35 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCS-EEEEECSC
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCe-EEEEEECC
Confidence 46899998 5999999999999988876 78887753
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.47 E-value=1.1 Score=37.12 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=25.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEE
Q 042694 110 AKNFFVTGATGFLAKVLIEKILRTVPDVGKIF 141 (554)
Q Consensus 110 ~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~ 141 (554)
+++|.+.| .|-+|+.+++.|++++++| .+|
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v-~~~ 30 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLL-NVF 30 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEE-EEE
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeE-EEE
Confidence 46799997 7999999999999998865 444
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.28 E-value=0.59 Score=46.95 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=30.2
Q ss_pred hhhccCcEEEEecccccccHHHHHHHHhhCCCccEEEEEcc
Q 042694 105 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA 145 (554)
Q Consensus 105 ~~~~~~~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~ 145 (554)
++.....+|+|.|++| +|..+++.|... .|+++.++|.
T Consensus 20 Q~~L~~s~VlvvG~gg-lG~Ei~knLvl~--GVg~itivD~ 57 (529)
T d1yova1 20 QEALESAHVCLINATA-TGTEILKNLVLP--GIGSFTIIDG 57 (529)
T ss_dssp HHHHHHCEEEECCCSH-HHHHHHHHHHTT--TCSEEEEECC
T ss_pred HHHHhCCCEEEECCCH-HHHHHHHHHHHh--cCCEEEEEcC
Confidence 3345667999999855 999999999975 5788888864
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.07 E-value=0.99 Score=36.91 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=39.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEcc--hhHHHHHHHcCCchhhhccCcEEEEEccCCCCCCCCCHHHHHH
Q 042694 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINA--ELFKCLKQTYGKSYQAFMLSKLVPAVGNVCENNLGLEEDLADV 188 (554)
Q Consensus 111 ~~VlITGaTGFlG~~Ll~~LL~~~~~V~~i~~~~~--~~~~~l~~~~~~~~~~~~~~kv~~v~GDl~~~~lGLs~~~~~~ 188 (554)
|+|.+.| +|-+|+.+++.|+++++ ++++.++ +..+.+.+..+. . . . .+.++
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~---~i~v~~r~~~~~~~l~~~~g~----------~-----~--~------~~~~~ 53 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPH---ELIISGSSLERSKEIAEQLAL----------P-----Y--A------MSHQD 53 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSC---EEEEECSSHHHHHHHHHHHTC----------C-----B--C------SSHHH
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCC---eEEEEcChHHhHHhhccccce----------e-----e--e------chhhh
Confidence 4688887 69999999999998765 4455443 223333333221 0 0 0 23456
Q ss_pred HhcCccEEEEcC
Q 042694 189 IAKEVDVIVNSA 200 (554)
Q Consensus 189 l~~~vdiViH~A 200 (554)
+.+++|+||-+.
T Consensus 54 ~~~~~dvIilav 65 (152)
T d2ahra2 54 LIDQVDLVILGI 65 (152)
T ss_dssp HHHTCSEEEECS
T ss_pred hhhccceeeeec
Confidence 678999999773
|