Citrus Sinensis ID: 042707

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
MKGSPFSHALTLLIFIQFATYMNTYCSAARPVQSETNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYASITSPK
cccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
ccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
mkgspfshALTLLIFIQFATYMNTycsaarpvqsetntqFIKTscrvttypdlcittlsgyatkiqaspKLLASTALSVALKTALVTSTTMnklsksqglnpreaAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALtnedtcmdgfsrksmngnvKATVRRQISNVAHLTSNGLALVNSyasitspk
MKGSPFSHALTLLIFIQFATYMNTYCSAARPVQSETNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSttmnklsksqglnpREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAhltsnglalvnsyasitspk
MKGSPFSHALTLLIFIQFATYMNTYCSAARPVQSETNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYASITSPK
*******HALTLLIFIQFATYMNTYCSAARPVQSETNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTST***************AAALYDCVDQLRDAV*****************FALQMNNVQTWVSAALTNEDTCMDGF*******NVKATVRRQISNVAHLTSNGLALVNSY*******
*****FS*ALTLLIFIQFATYMN******************KTSCRVTTYPDLCIT****************ASTALSVALKTALVTSTTM**************AALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRK***********RQISNVAHLTSNGLALVNSYAS*****
MKGSPFSHALTLLIFIQFATYMNTYCSAARPVQSETNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTST**********LNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYASITSPK
***SPFSHALTLLIFIQFATYMNTYCSA******ETNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYASI****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKGSPFSHALTLLIFIQFATYMNTYCSAARPVQSETNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCxxxxxxxxxxxxxxxxxxxxxERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYASITSPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query203 2.2.26 [Sep-21-2011]
P17407193 21 kDa protein OS=Daucus N/A no 0.788 0.829 0.490 5e-40
Q42534 587 Pectinesterase 2 OS=Arabi no no 0.788 0.272 0.290 3e-17
O49006 592 Pectinesterase/pectineste no no 0.748 0.256 0.307 4e-16
Q43143 583 Pectinesterase/pectineste N/A no 0.748 0.260 0.293 4e-16
O04886 584 Pectinesterase 1 OS=Citru no no 0.778 0.270 0.300 7e-16
P83948 584 Pectinesterase 3 OS=Citru no no 0.778 0.270 0.300 8e-16
Q3E8Z8 732 Putative pectinesterase/p no no 0.743 0.206 0.322 4e-14
Q8GX86 669 Probable pectinesterase/p no no 0.724 0.219 0.324 3e-13
Q9FK05 587 Probable pectinesterase/p no no 0.847 0.293 0.293 5e-13
Q9M3B0 598 Probable pectinesterase/p no no 0.763 0.259 0.301 1e-11
>sp|P17407|21KD_DAUCA 21 kDa protein OS=Daucus carota PE=2 SV=1 Back     alignment and function desciption
 Score =  164 bits (414), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 115/163 (70%), Gaps = 3/163 (1%)

Query: 39  QFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQ 98
           QFIKTSC +TTYP +C  +LS YA  IQ +P+ LASTAL V+L       T M +L+K +
Sbjct: 27  QFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFK 86

Query: 99  GLNPREAAALYDCVDQLRDAVDELQNSISEM---GRNERSNFALQMNNVQTWVSAALTNE 155
           GL  R+ AA++DC++++ D++D +  S  EM      + ++F  +M+NV+TWVSAALT+E
Sbjct: 87  GLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDE 146

Query: 156 DTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYAS 198
            TCMDGF+ K M+G +K +VR Q+  VA +TSN LALVN++A+
Sbjct: 147 TTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAA 189

Daucus carota (taxid: 4039)
>sp|Q42534|PME2_ARATH Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2 Back     alignment and function description
>sp|O49006|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2 Back     alignment and function description
>sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|Q3E8Z8|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1 Back     alignment and function description
>sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
225426925204 PREDICTED: 21 kDa protein [Vitis vinifer 0.990 0.985 0.595 1e-58
225466065201 PREDICTED: 21 kDa protein [Vitis vinifer 0.975 0.985 0.56 2e-58
225466067202 PREDICTED: 21 kDa protein-like [Vitis vi 0.975 0.980 0.562 3e-58
359496423204 PREDICTED: 21 kDa protein-like [Vitis vi 0.970 0.965 0.572 7e-57
225426923201 PREDICTED: 21 kDa protein-like [Vitis vi 0.965 0.975 0.534 4e-53
255539741201 21 kDa protein precursor, putative [Rici 0.940 0.950 0.546 4e-53
254692064205 PME inhibitor [Nicotiana benthamiana] 0.975 0.965 0.519 1e-52
225466061200 PREDICTED: 21 kDa protein [Vitis vinifer 0.975 0.99 0.522 1e-52
147812160200 hypothetical protein VITISV_015784 [Viti 0.975 0.99 0.527 9e-52
225466063200 PREDICTED: 21 kDa protein [Vitis vinifer 0.975 0.99 0.527 1e-51
>gi|225426925|ref|XP_002264891.1| PREDICTED: 21 kDa protein [Vitis vinifera] gi|147832320|emb|CAN71118.1| hypothetical protein VITISV_041020 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/205 (59%), Positives = 149/205 (72%), Gaps = 4/205 (1%)

Query: 1   MKGSPFSHALT-LLIFIQFATYMNTYCSAARPVQSETNTQFIKTSCRVTTYPDLCITTLS 59
           M+GS F +AL  L I +Q  T+MNT CSAARP  +E   +FIKTSCR TTYP LC ++L 
Sbjct: 1   MEGSYFFNALAALFILLQLTTHMNT-CSAARPSPNEAYAEFIKTSCRTTTYPQLCTSSLL 59

Query: 60  GYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDAV 119
            YA+KIQ SPK+LA TALS+AL TA  TST + KLSK+Q L P EAAA+ DCV+ L D+ 
Sbjct: 60  SYASKIQTSPKILADTALSIALATAHSTSTAITKLSKTQSLKPGEAAAIRDCVEVLGDSE 119

Query: 120 DELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQI 179
           DELQ SI EM   E  +F LQM+++QTWVSAALTN+DTCMD F+  +MNGNVK  VR  I
Sbjct: 120 DELQMSIQEMEHPEGKSFGLQMSDIQTWVSAALTNDDTCMDSFAGNAMNGNVKTIVRGYI 179

Query: 180 SNVAHLTSNGLALVNSYA--SITSP 202
            +VA +TS  LAL+N+YA    TSP
Sbjct: 180 LHVAQMTSVALALINNYALGQTTSP 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225466065|ref|XP_002264028.1| PREDICTED: 21 kDa protein [Vitis vinifera] gi|296084185|emb|CBI24573.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225466067|ref|XP_002264101.1| PREDICTED: 21 kDa protein-like [Vitis vinifera] gi|225466069|ref|XP_002264204.1| PREDICTED: 21 kDa protein-like [Vitis vinifera] gi|147863137|emb|CAN82970.1| hypothetical protein VITISV_006071 [Vitis vinifera] gi|296084186|emb|CBI24574.3| unnamed protein product [Vitis vinifera] gi|296084187|emb|CBI24575.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496423|ref|XP_003635233.1| PREDICTED: 21 kDa protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225426923|ref|XP_002264799.1| PREDICTED: 21 kDa protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539741|ref|XP_002510935.1| 21 kDa protein precursor, putative [Ricinus communis] gi|223550050|gb|EEF51537.1| 21 kDa protein precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|254692064|emb|CBA10126.1| PME inhibitor [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|225466061|ref|XP_002264167.1| PREDICTED: 21 kDa protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|147812160|emb|CAN70288.1| hypothetical protein VITISV_015784 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225466063|ref|XP_002263991.1| PREDICTED: 21 kDa protein [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
TAIR|locus:2167893203 AT5G62360 [Arabidopsis thalian 0.935 0.935 0.468 1.7e-41
TAIR|locus:2168003202 AT5G62350 [Arabidopsis thalian 0.926 0.930 0.432 1.5e-37
TAIR|locus:2099545202 AT3G47380 [Arabidopsis thalian 0.921 0.925 0.427 1.9e-35
TAIR|locus:2122624201 AT4G25260 [Arabidopsis thalian 0.916 0.925 0.409 5.1e-35
TAIR|locus:2026237204 AT1G62770 [Arabidopsis thalian 0.866 0.862 0.453 9.5e-34
TAIR|locus:2026227312 AT1G62760 [Arabidopsis thalian 0.837 0.544 0.44 2.5e-33
TAIR|locus:2049597222 AT2G01610 [Arabidopsis thalian 0.802 0.734 0.463 5.2e-33
TAIR|locus:2139094206 PME1 "pectin methylesterase in 0.916 0.902 0.406 8.5e-33
TAIR|locus:2006842219 AT1G14890 [Arabidopsis thalian 0.901 0.835 0.392 4.7e-32
TAIR|locus:2122699199 AT4G25250 [Arabidopsis thalian 0.926 0.944 0.373 2e-31
TAIR|locus:2167893 AT5G62360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 90/192 (46%), Positives = 130/192 (67%)

Query:     8 HALTLLIFIQFATYMNTYCSAARPVQSETNTQFIKTSCRVTTYPDLCITTLSGYATKIQA 67
             H LT  + I  A     + +      + TNT+F+K+SC  TTYP LC ++LS +A+ IQ 
Sbjct:    12 HFLTTFLII-IAMLKLVHTTTTTTTTTTTNTEFVKSSCTFTTYPRLCFSSLSTHASLIQT 70

Query:    68 SPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDAVDELQNSIS 127
             SPKL+A  AL++ L +A VTS  M +LS S+ L P+E +A+ DCV++L D ++EL+ SI 
Sbjct:    71 SPKLMAHAALNITLASAKVTSAMMVRLSNSR-LKPKEVSAMRDCVEELGDTLEELRKSIG 129

Query:   128 EMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTS 187
             EM +   SN+ + ++++QTWVSAALT+ +TC DGF  + M+G VK  VR +I  +AHLTS
Sbjct:   130 EMCQLSGSNYEVYISDIQTWVSAALTDVNTCTDGFEGEDMDGKVKVLVRGRILVIAHLTS 189

Query:   188 NGLALVNSYASI 199
             N LAL+N +ASI
Sbjct:   190 NALALINHFASI 201
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0030599 "pectinesterase activity" evidence=IEA
GO:0046910 "pectinesterase inhibitor activity" evidence=ISS
TAIR|locus:2168003 AT5G62350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099545 AT3G47380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122624 AT4G25260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026237 AT1G62770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026227 AT1G62760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049597 AT2G01610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139094 PME1 "pectin methylesterase inhibitor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006842 AT1G14890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122699 AT4G25250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029888001
SubName- Full=Chromosome undetermined scaffold_51, whole genome shotgun sequence; (201 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 1e-39
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 9e-33
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 1e-30
PLN02314 586 PLN02314, PLN02314, pectinesterase 1e-21
PLN02313 587 PLN02313, PLN02313, Pectinesterase/pectinesterase 4e-20
PLN02745 596 PLN02745, PLN02745, Putative pectinesterase/pectin 6e-20
PLN02484 587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-18
PLN02468 565 PLN02468, PLN02468, putative pectinesterase/pectin 2e-17
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 4e-17
PLN02506 537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-14
PLN02201 520 PLN02201, PLN02201, probable pectinesterase/pectin 4e-11
PLN02301 548 PLN02301, PLN02301, pectinesterase/pectinesterase 7e-11
PLN02933 530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-10
PLN02698 497 PLN02698, PLN02698, Probable pectinesterase/pectin 3e-10
PLN02416 541 PLN02416, PLN02416, probable pectinesterase/pectin 2e-09
PLN02990 572 PLN02990, PLN02990, Probable pectinesterase/pectin 8e-09
PLN02713 566 PLN02713, PLN02713, Probable pectinesterase/pectin 2e-08
PLN02170 529 PLN02170, PLN02170, probable pectinesterase/pectin 5e-08
PLN03043 538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-07
PLN02995 539 PLN02995, PLN02995, Probable pectinesterase/pectin 3e-07
PLN02708 553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-04
PLN02197 588 PLN02197, PLN02197, pectinesterase 6e-04
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information 
 Score =  132 bits (334), Expect = 1e-39
 Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 10/157 (6%)

Query: 36  TNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLS 95
             ++ I + C+ T YPD C+++LS   +     PK LA  A+ VAL  A  T + ++KL 
Sbjct: 2   PTSKLIDSICKSTDYPDFCVSSLSSDPSSSATDPKDLAKIAIKVALSQATKTLSFISKLL 61

Query: 96  KSQGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNE 155
           K    +PR  AAL DC++   DAVD L+ ++ E+            ++V TW+SAALT++
Sbjct: 62  KKT-KDPRLKAALKDCLELYDDAVDSLEKALEELKSG-------DYDDVATWLSAALTDQ 113

Query: 156 DTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLAL 192
           DTC+DGF  +  +  VK+ + ++  N+  LTSN LA+
Sbjct: 114 DTCLDGF--EENDDKVKSPLTKRNDNLEKLTSNALAI 148

This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical. Length = 148
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 203
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 100.0
PLN02314 586 pectinesterase 100.0
PLN02313 587 Pectinesterase/pectinesterase inhibitor 99.98
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 99.97
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 99.97
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 99.97
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 99.97
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 99.97
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 99.97
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 99.97
PLN02197 588 pectinesterase 99.97
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.97
PLN02301 548 pectinesterase/pectinesterase inhibitor 99.97
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 99.97
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 99.97
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 99.97
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 99.96
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 99.95
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 99.92
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 99.89
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 99.88
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 99.82
PLN02916 502 pectinesterase family protein 99.67
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information 
Probab=100.00  E-value=1.5e-32  Score=217.65  Aligned_cols=154  Identities=34%  Similarity=0.561  Sum_probs=141.5

Q ss_pred             CCcchhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHH
Q 042707           33 QSETNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCV  112 (203)
Q Consensus        33 ~~~~~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~  112 (203)
                      +..++...|+.+|++|+||++|+++|.++|++...|+.+|+.++++.+..++..+..++.++... ..++..+.++++|.
T Consensus        24 ~~~~~~~~i~~~C~~t~~~~~C~~~L~~~~~~~~ad~~~la~~ai~~a~~~~~~~~~~i~~l~~~-~~~~~~~~al~~C~  102 (178)
T TIGR01614        24 SLNATQSLIKRICKKTEYPNFCISTLKSDPSSAKADLQGLANISVSAALSNASDTLDHISKLLLT-KGDPRDKSALEDCV  102 (178)
T ss_pred             CCcchHHHHHHHHcCCCChHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHH
Confidence            55678899999999999999999999999988778999999999999999999999999998764 34789999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 042707          113 DQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLAL  192 (203)
Q Consensus       113 e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLai  192 (203)
                      ++|++++++|+++++++..+       +++|+++|||+|+++++||+|||.+.+  +..+++|...+.++.+|++|+|+|
T Consensus       103 ~~y~~a~~~L~~a~~~l~~~-------~~~d~~~~ls~a~~~~~tC~d~f~~~~--~~~~~~l~~~~~~~~~l~s~alai  173 (178)
T TIGR01614       103 ELYSDAVDALDKALASLKSK-------DYSDAETWLSSALTDPSTCEDGFEELG--GIVKSPLTKRNNNVKKLSSITLAI  173 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-------chhHHHHHHHHHHcccchHHHHhccCC--CCccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999865       789999999999999999999999764  357889999999999999999999


Q ss_pred             HHhh
Q 042707          193 VNSY  196 (203)
Q Consensus       193 i~~l  196 (203)
                      ++.+
T Consensus       174 ~~~~  177 (178)
T TIGR01614       174 IKML  177 (178)
T ss_pred             HHhc
Confidence            9875

This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
1x8z_A153 Crystal Structure Of A Pectin Methylesterase Inhibi 7e-05
1x90_A152 Crystal Structure Of Mutant Form B Of A Pectin Meth 5e-04
1x91_A153 Crystal Structure Of Mutant Form A Of A Pectin Meth 5e-04
>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor From Arabidopsis Thaliana Length = 153 Back     alignment and structure 
Iteration: 1

 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 41  IKTSCRVTTYPDLCITTLSGYATKIQASPKL--LASTALSVALKTALVTSTTMNKLSK-- 96
           + T C  T  P  C+  L+   TK  ASP L  LA T L     T    + T+ KL    
Sbjct: 8   MSTICDKTLNPSFCLKFLN---TKF-ASPNLQALAKTTLD---STQARATQTLKKLQSII 60
Query: 97  SQGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNED 156
             G++PR   A   CVD+   A+  L+ +   +   +     + MN     VSAAL   D
Sbjct: 61  DGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGD----GMGMN---MKVSAALDGAD 113
Query: 157 TCMDGFSR 164
           TC+D   R
Sbjct: 114 TCLDDVKR 121
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin Methylesterase Inhibitor From Arabidopsis Length = 152 Back     alignment and structure
>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin Methylesterase Inhibitor From Arabidopsis Length = 153 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 2e-35
1x91_A153 Invertase/pectin methylesterase inhibitor family p 3e-32
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 6e-27
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
 Score =  121 bits (305), Expect = 2e-35
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 11/156 (7%)

Query: 39  QFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQ 98
             I   C  T  P LC+  L           K L   ++ +A  +A  TS  +  L+   
Sbjct: 4   HLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ- 62

Query: 99  GLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTC 158
             +P+       C +   DA+D L  +   +            N++  + SAA     TC
Sbjct: 63  ATDPKLKGRYETCSENYADAIDSLGQAKQFLTSG-------DYNSLNIYASAAFDGAGTC 115

Query: 159 MDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVN 194
            D F       N+   + +    +  L    L + N
Sbjct: 116 EDSFEGP---PNIPTQLHQADLKLEDLCDIVLVISN 148
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 100.0
1x91_A153 Invertase/pectin methylesterase inhibitor family p 100.0
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 100.0
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
Probab=100.00  E-value=7.5e-35  Score=223.96  Aligned_cols=149  Identities=21%  Similarity=0.353  Sum_probs=138.0

Q ss_pred             hHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHH
Q 042707           38 TQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRD  117 (203)
Q Consensus        38 ~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y~~  117 (203)
                      .+.|+.+|++|+||++|+++|.++|++...|+++|+++++++++.++..+..++.++.+. ..+|..+.+|+||.|+|++
T Consensus         3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~-~~~~~~~~al~dC~e~y~~   81 (153)
T 1xg2_B            3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ-ATDPKLKGRYETCSENYAD   81 (153)
T ss_dssp             CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999988788999999999999999999999999998764 3589999999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 042707          118 AVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYA  197 (203)
Q Consensus       118 a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~l~  197 (203)
                      ++++|++++..|..+       +++|+++|||+|+++++||+|||++.+   .++++|...+.++.+|++|+|+|++.+.
T Consensus        82 a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~~~~~~~~~l~s~aLai~~~l~  151 (153)
T 1xg2_B           82 AIDSLGQAKQFLTSG-------DYNSLNIYASAAFDGAGTCEDSFEGPP---NIPTQLHQADLKLEDLCDIVLVISNLLP  151 (153)
T ss_dssp             HHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHHHHCCSSS---CCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhC-------CHHHHHHHHHHHhcccchHHHHhccCC---CCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999865       689999999999999999999998753   4678999999999999999999999875
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 203
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 4e-31
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 4e-28
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Plant invertase/pectin methylesterase inhibitor
family: Plant invertase/pectin methylesterase inhibitor
domain: Pectin methylesterase inhibitor 1, PMEI1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  108 bits (272), Expect = 4e-31
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 13/157 (8%)

Query: 38  TQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKS 97
           +  + T C  T  P  C+  L+       A+ + LA T L      A  T   +  +   
Sbjct: 1   SSEMSTICDKTLNPSFCLKFLNTKFAS--ANLQALAKTTLDSTQARATQTLKKLQSIIDG 58

Query: 98  QGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDT 157
            G++PR   A   CVD+   A+  L+ +   +   +          +   VSAAL   DT
Sbjct: 59  -GVDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGD-------GMGMNMKVSAALDGADT 110

Query: 158 CMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVN 194
           C+D   R     +V ++V      + +L    L + N
Sbjct: 111 CLDDVKRL---RSVDSSVVNNSKTIKNLCGIALVISN 144
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 100.0
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Plant invertase/pectin methylesterase inhibitor
family: Plant invertase/pectin methylesterase inhibitor
domain: Invertase inhibitor
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=4.2e-33  Score=211.55  Aligned_cols=144  Identities=17%  Similarity=0.239  Sum_probs=133.6

Q ss_pred             HHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHH
Q 042707           39 QFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDA  118 (203)
Q Consensus        39 ~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y~~a  118 (203)
                      ++|+.+|++|+||++|+++|.++|++..+|+++|+.++++++++++..+..++.++.+ ...++..+.+|++|.|+|+++
T Consensus         2 ~lI~~~C~~T~~~~~C~~sL~~~p~s~~ad~~~la~~av~~a~~~a~~~~~~i~~l~~-~~~~~~~~~al~~C~e~y~~a   80 (147)
T d2cj4a1           2 NLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRH-SNPPAAWKGPLKNCAFSYKVI   80 (147)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SCCCGGGHHHHHHHHHHHHHH
T ss_pred             hHHHHhhcCCCCcHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999888899999999999999999999999999875 357899999999999999999


Q ss_pred             HH-HHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 042707          119 VD-ELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSY  196 (203)
Q Consensus       119 ~d-~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~l  196 (203)
                      ++ .|+.|...+..+       +++++++|||+|+++++||+|||++.      ++||..+++++.+|++|+|+|++.|
T Consensus        81 v~~~l~~a~~~l~~~-------~~~~~~~~lsaa~~~~~tC~d~f~~~------~spl~~~~~~~~~l~~ial~i~~~L  146 (147)
T d2cj4a1          81 LTASLPEAIEALTKG-------DPKFAEDGMVGSSGDAQECEEYFKGS------KSPFSALNIAVHELSDVGRAIVRNL  146 (147)
T ss_dssp             HHTHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHHHTTTTS------CCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhHHHHhhHHhCCC------CCcHHHHHHHHHHHHHHHHHHHHhh
Confidence            97 699999999865       78999999999999999999999863      4678999999999999999999976
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure