Citrus Sinensis ID: 042715

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLPKKM
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccHHHHcccccccEEccccEEccccccccccccccccEEccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccHHHHHccccccEEEccccccccccHHHHHccccccEEcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccHEEEccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccc
Coil and Loop (DISEMBL)
ISLCFDIIYIKlsgnqltgpipywLENLENISTLWLEknqltgcipfeignlkNLSTLCLEHKqltgripseigklkpiaassnnfrgsipqtCKNEANLAMIELSSnllegrvpkslascteLKFLNLVSEGIFSSTLGNLIVLESldlsnnklsgqipqqfgeltsleffdvsdnlvigpipqgkqfntfetssfdgnpglcgeplpkkm
Flexible Loop (DISEMBL)
ISLCFDIIYIklsgnqltgPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSsfdgnpglcgeplpkkm
Low Complexity Region (SEG)
ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLPKKM
Disordered region (IsUnstruct)
**LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPI**********I*QTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNT*********************
Disordered Region (DISOPRED)
ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLP***
Disordered Region (DISEMBL)
ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLPKKM
Disordered Region (DISPRO)
*SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLPKKM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.962	0.163	0.382	5e-29
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.962	0.162	0.377	1e-28
C0LGX3	993	LRR receptor-like serine/	no	no	0.943	0.201	0.394	3e-28
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.990	0.175	0.332	1e-27
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.938	0.190	0.385	2e-27
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.839	0.161	0.391	1e-26
Q00874	372	DNA-damage-repair/tolerat	no	no	0.952	0.543	0.375	2e-26
C0LGE4	882	Probable LRR receptor-lik	no	no	0.943	0.226	0.373	6e-26
C0LGV1	1135	LRR receptor-like serine/	no	no	0.858	0.160	0.393	2e-25
Q9LP24	1120	Probable leucine-rich rep	no	no	0.933	0.176	0.383	1e-24

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  127 bits (319), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 115/217 (52%), Gaps = 13/217 (5%)

Query: 3   LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEH 62
           LC  + +I L+ N L+GPIP WL  L  +  L L  NQ    +P E+ N   L  L L+ 
Sbjct: 645 LCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDG 704

Query: 63  KQLTGRIPSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP---- 115
             L G IP EIG L  +       N F GS+PQ     + L  + LS N L G +P    
Sbjct: 705 NSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIG 764

Query: 116 --KSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFD 173
             + L S  +L + N    G   ST+G L  LE+LDLS+N+L+G++P   G++ SL + +
Sbjct: 765 QLQDLQSALDLSYNNFT--GDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLN 822

Query: 174 VSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLPK 210
           VS N + G +   KQF+ +   SF GN GLCG PL +
Sbjct: 823 VSFNNLGGKLK--KQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/217 (37%), Positives = 118/217 (54%), Gaps = 13/217 (5%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           + LC  + +I L+ N L+G IP WL  L  +  L L  N+  G +P EI +L N+ TL L
Sbjct: 644 LGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFL 703

Query: 61  EHKQLTGRIPSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP-- 115
           +   L G IP EIG L+ + A     N   G +P T    + L  + LS N L G +P  
Sbjct: 704 DGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVE 763

Query: 116 ----KSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEF 171
               + L S  +L + N    G   ST+  L  LESLDLS+N+L G++P Q G++ SL +
Sbjct: 764 IGQLQDLQSALDLSYNNFT--GRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGY 821

Query: 172 FDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL 208
            ++S N + G +   KQF+ ++  +F GN GLCG PL
Sbjct: 822 LNLSYNNLEGKLK--KQFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 113/208 (54%), Gaps = 8/208 (3%)

Query: 4   CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
           C  + YI+++ N+L+G +P     L          NQL G IP  I   ++LS L +   
Sbjct: 410 CHSLNYIRMADNKLSGEVPARFWELPLTRLELANNNQLQGSIPPSISKARHLSQLEISAN 469

Query: 64  QLTGRIP---SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
             +G IP    ++  L+ I  S N+F GSIP       NL  +E+  N+L+G +P S++S
Sbjct: 470 NFSGVIPVKLCDLRDLRVIDLSRNSFLGSIPSCINKLKNLERVEMQENMLDGEIPSSVSS 529

Query: 121 CTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           CTEL  LNL +    G     LG+L VL  LDLSNN+L+G+IP +   L  L  F+VSDN
Sbjct: 530 CTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPAELLRL-KLNQFNVSDN 588

Query: 178 LVIGPIPQGKQFNTFETSSFDGNPGLCG 205
            + G IP G Q + F   SF GNP LC 
Sbjct: 589 KLYGKIPSGFQQDIFR-PSFLGNPNLCA 615

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 123/262 (46%), Gaps = 52/262 (19%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +S C ++ +I LS N+LTG IP W+  LEN++ L L  N  +G IP E+G+ ++L  L L
Sbjct: 508 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 567

Query: 61  EHKQLTGRIPSEI----GKLK--------------------------------------- 77
                 G IP+ +    GK+                                        
Sbjct: 568 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 627

Query: 78  ------PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
                 P   +S  + G    T  N  ++  +++S N+L G +PK + S   L  LNL  
Sbjct: 628 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 687

Query: 132 EGIFSST---LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQ 188
             I  S    +G+L  L  LDLS+NKL G+IPQ    LT L   D+S+N + GPIP+  Q
Sbjct: 688 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 747

Query: 189 FNTFETSSFDGNPGLCGEPLPK 210
           F TF  + F  NPGLCG PLP+
Sbjct: 748 FETFPPAKFLNNPGLCGYPLPR 769

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 112/205 (54%), Gaps = 6/205 (2%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           ++   LS N +TG IP  + N+  +S L L  N++TG +P  I N+  +S L L   +L+
Sbjct: 480 LVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLS 539

Query: 67  GRIPSEI---GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTE 123
           G+IPS I     L+ +  SSN F   IP T  N   L  + LS N L+  +P+ L   ++
Sbjct: 540 GKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQ 599

Query: 124 LKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180
           L+ L+L     +G  SS   +L  LE LDLS+N LSGQIP  F ++ +L   DVS N + 
Sbjct: 600 LQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQ 659

Query: 181 GPIPQGKQFNTFETSSFDGNPGLCG 205
           GPIP    F      +F+GN  LCG
Sbjct: 660 GPIPDNAAFRNAPPDAFEGNKDLCG 684

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 107/184 (58%), Gaps = 6/184 (3%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           +I + L  N+L+G IP  L+  ++++ L L  NQLTG +P E+ NL+NL+ L L    L+
Sbjct: 429 LILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLS 488

Query: 67  GRIPSEIGKLK---PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTE 123
           G I +++GKLK    +  ++NNF G IP    N   +    +SSN L G +PK L SC  
Sbjct: 489 GNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVT 548

Query: 124 LKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180
           ++ L+L      G  +  LG L+ LE L LS+N+L+G+IP  FG+LT L    +  NL+ 
Sbjct: 549 IQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLS 608

Query: 181 GPIP 184
             IP
Sbjct: 609 ENIP 612

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 109/208 (52%), Gaps = 6/208 (2%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           +  + L+ NQ++G IP  L +L  +  L L +N +TG IP + G+LK LS + L   +LT
Sbjct: 161 LAVLNLAENQMSGEIPASLTSLIELKHLELTENGITGVIPADFGSLKMLSRVLLGRNELT 220

Query: 67  GRIPSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTE 123
           G IP  I  ++ +A    S N+  G IP+   N   L+++ L  N L G +P SL S + 
Sbjct: 221 GSIPESISGMERLADLDLSKNHIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSG 280

Query: 124 LKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180
           L   NL     EG      G+   L SLDLS+N LSG+IP        +   D+S N + 
Sbjct: 281 LDVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLC 340

Query: 181 GPIPQGKQFNTFETSSFDGNPGLCGEPL 208
           G IP G  F+  E +SF  N  LCG PL
Sbjct: 341 GRIPTGFPFDHLEATSFSDNQCLCGGPL 368

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score =  117 bits (293), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 6/206 (2%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
           ++  S N+LTG IP  +   +++  L LE N+L G IP  IG +++LS + L +  + G 
Sbjct: 288 FLDASSNELTGRIPTGVMGCKSLKLLDLESNKLNGSIPGSIGKMESLSVIRLGNNSIDGV 347

Query: 69  IPSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
           IP +IG L+ +      + N  G +P+   N   L  +++S N LEG++ K L + T +K
Sbjct: 348 IPRDIGSLEFLQVLNLHNLNLIGEVPEDISNCRVLLELDVSGNDLEGKISKKLLNLTNIK 407

Query: 126 FLNLVSEGIFSST---LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGP 182
            L+L    +  S    LGNL  ++ LDLS N LSG IP   G L +L  F+VS N + G 
Sbjct: 408 ILDLHRNRLNGSIPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGV 467

Query: 183 IPQGKQFNTFETSSFDGNPGLCGEPL 208
           IP       F +S+F  NP LCG+PL
Sbjct: 468 IPPVPMIQAFGSSAFSNNPFLCGDPL 493

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 108/188 (57%), Gaps = 6/188 (3%)

Query: 4   CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
           C ++  + LS N LTG +P  L  L N++ L L  N ++G IP EIGN  +L  L L + 
Sbjct: 418 CQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNN 477

Query: 64  QLTGRIPSEIGKLKPIA---ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
           ++TG IP  IG L+ ++    S NN  G +P    N   L M+ LS+N L+G +P SL+S
Sbjct: 478 RITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSS 537

Query: 121 CTELKFLNLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
            T+L+ L++ S    G    +LG+LI L  L LS N  +G+IP   G  T+L+  D+S N
Sbjct: 538 LTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSN 597

Query: 178 LVIGPIPQ 185
            + G IP+
Sbjct: 598 NISGTIPE 605

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 112/206 (54%), Gaps = 8/206 (3%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP- 70
           +S N +TG IP  + N+  +  L L  N L G +P  IGNL NLS L L   QL+GR+P 
Sbjct: 565 MSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPA 624

Query: 71  --SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
             S +  L+ +  SSNNF   IPQT  +   L  + LS N  +G +P+ L+  T+L  L+
Sbjct: 625 GLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQLD 683

Query: 129 LVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ 185
           L     +G   S L +L  L+ LDLS+N LSG IP  F  + +L   D+S+N + GP+P 
Sbjct: 684 LSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPD 743

Query: 186 GKQFNTFETSSFDGNPGLCGEPLPKK 211
              F      + + N GLC   +PK+
Sbjct: 744 TPTFRKATADALEENIGLCSN-IPKQ 768

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
357134470	965	PREDICTED: LRR receptor-like serine/thre	0.981	0.215	0.410	2e-32
296085018	1477	unnamed protein product [Vitis vinifera]	0.943	0.135	0.444	4e-32
296085012	1221	unnamed protein product [Vitis vinifera]	0.976	0.169	0.418	8e-32
242087059	978	hypothetical protein SORBIDRAFT_09g00515	0.971	0.210	0.407	2e-31
296090047	762	unnamed protein product [Vitis vinifera]	0.933	0.259	0.404	6e-30
1263160	990	leucine-rich repeat/receptor protein kin	0.952	0.204	0.382	1e-29
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.952	0.103	0.370	1e-29
302797599	501	hypothetical protein SELMODRAFT_112929 [	0.929	0.393	0.416	2e-29
224128143	923	predicted protein [Populus trichocarpa]	0.952	0.218	0.379	2e-29
115469988	994	Os06g0717200 [Oryza sativa Japonica Grou	0.962	0.205	0.379	2e-29

>gi|357134470|ref|XP_003568840.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Brachypodium distachyon]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/217 (41%), Positives = 121/217 (55%), Gaps = 9/217 (4%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +S C  +  + L GN LTG +P WL +L ++  L L  N LTG IP E+GN  +L  L L
Sbjct: 640 LSNCLQLTRLNLEGNSLTGAVPSWLGSLRSLGELDLSSNALTGNIPVELGNCSSLIKLSL 699

Query: 61  EHKQLTGRIPSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS 117
               L+G IP EIG+L  +       N   G IP T +    L  + LS N LEG +P  
Sbjct: 700 RDNHLSGNIPQEIGRLTSLNVLNLQKNRLTGVIPPTLRQCNKLYELSLSENSLEGPIPPE 759

Query: 118 LASCTELKFLNLVSE----GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFD 173
           L   +EL+ +  +S     G   ++LGNLI LE L+LS+N+L GQIP    +LTSL   +
Sbjct: 760 LGQLSELQVMLDLSRNRLSGQIPTSLGNLIKLERLNLSSNQLHGQIPSSLLQLTSLNHLN 819

Query: 174 VSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLPK 210
           +SDNL+ G IP     ++F  +S+ GN  LCG PLP 
Sbjct: 820 LSDNLLSGAIP--TVLSSFPAASYAGNDELCGTPLPA 854

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085018|emb|CBI28433.3| unnamed protein product [Vitis vinifera]

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 120/207 (57%), Gaps = 7/207 (3%)

Query: 12   LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNL-KNLSTLCLEHKQLTGRIP 70
            +SGN+LTG I   + N+ ++  L L  N L+G IP  + N  ++L  L L    L G IP
Sbjct: 1079 VSGNKLTGEISPLICNMTSLELLDLSSNNLSGRIPQCLANFSRSLFVLDLGSNSLDGPIP 1138

Query: 71   ---SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
               +    L  I    N F+G IP++ +       I+ S N  +G++P S+ S   +  L
Sbjct: 1139 EICTVSHNLNVIDLGDNQFQGQIPRSLRILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLL 1198

Query: 128  NLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
            NL      G   S+LGNL  LESLDLS NKLSG+IP Q   LT LEFF+VS N + G IP
Sbjct: 1199 NLGGNDLTGHIPSSLGNLTQLESLDLSQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIP 1258

Query: 185  QGKQFNTFETSSFDGNPGLCGEPLPKK 211
            QGKQF TFE +SFDGN GLCG PL ++
Sbjct: 1259 QGKQFATFENASFDGNLGLCGSPLSRE 1285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085012|emb|CBI28427.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 102/244 (41%), Positives = 133/244 (54%), Gaps = 37/244 (15%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENL--ENISTLWLEKN-----------------------Q 40
           D   + LS N++ GPIP W+ N+  E + TL L  N                       +
Sbjct: 129 DTNVLCLSNNKIHGPIPGWMWNISKETLVTLLLSGNFLTGFEQLPVPPPSTFDYSVSVNK 188

Query: 41  LTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKP----IAASSNNFRGSIPQTCKN 96
           L+G IP  I N+ +LS L L    L+GRIP  +  L      +    N   GSIPQTC  
Sbjct: 189 LSGQIPPLICNMSSLSLLDLSGNSLSGRIPQCLTNLSSSSSILNLRGNRLHGSIPQTCTE 248

Query: 97  EANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS--------EGIFSSTLGNLIVLESL 148
            +NL MI+LS N L+G++P SLA+C  L+ L L +         G   ++L NL +LE+L
Sbjct: 249 TSNLRMIDLSENQLQGKIPGSLANCMMLEELGLQALNLSNNALTGPIPASLANLTLLEAL 308

Query: 149 DLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL 208
           DLS NKLS +IPQQ  +LT LEFF+VS N + GPIPQGKQF TF  +SFDGN G     L
Sbjct: 309 DLSQNKLSREIPQQLVQLTFLEFFNVSHNHLTGPIPQGKQFATFPNTSFDGNLGFFSGEL 368

Query: 209 PKKM 212
           P  +
Sbjct: 369 PASI 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242087059|ref|XP_002439362.1| hypothetical protein SORBIDRAFT_09g005150 [Sorghum bicolor] gi|241944647|gb|EES17792.1| hypothetical protein SORBIDRAFT_09g005150 [Sorghum bicolor]

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 126/216 (58%), Gaps = 10/216 (4%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +S C ++ ++KL GN LTG +P WL +L ++  L L  N  TG IP E+GN   L  L L
Sbjct: 650 LSSCVELTHLKLDGNSLTGTVPAWLGSLRSLGELDLSWNVFTGGIPPELGNCSGLLKLSL 709

Query: 61  EHKQLTGRIPSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS 117
               LTG IP EIG+L  +     + N+  G+IP + +    L  + LS N LEG +P  
Sbjct: 710 SDNHLTGSIPPEIGRLTSLNVLNLNKNSLTGAIPPSLQQCNKLYELRLSENSLEGPIPPE 769

Query: 118 LASCTELKFLNLVSE----GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFD 173
           L   +EL+ +  +S     G   ++LG+L+ LE L+LS+N+L GQIP    +LTSL   +
Sbjct: 770 LGQLSELQVILDLSRNRLSGEIPASLGSLVKLERLNLSSNRLDGQIPSSLLQLTSLHRLN 829

Query: 174 VSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLP 209
           +SDNL+ G +P G   ++F  +SF GN  LCG PLP
Sbjct: 830 LSDNLLSGAVPAG--LSSFPAASFVGNE-LCGAPLP 862

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090047|emb|CBI39866.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/230 (40%), Positives = 117/230 (50%), Gaps = 32/230 (13%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           L+ N++ G IP  L N  N+  + L  NQLTG IP  IGNL NL+ L L +  L GRIPS
Sbjct: 457 LNNNRINGTIPLSLANCTNLIWVSLASNQLTGEIPAGIGNLHNLAVLQLGNNTLNGRIPS 516

Query: 72  EIGK---LKPIAASSNNFRGSIPQTCKNEANLA--------------------------M 102
           E+GK   L  +  +SN F GS+P    +EA L                            
Sbjct: 517 ELGKCQNLIWLDLNSNGFSGSVPSELASEAGLVTPGLVSGKQIYSGVTVYTFSSNGSMIY 576

Query: 103 IELSSNLLEGRVPKSLASCTELKFLNLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQI 159
           ++LS N L G +P+S  S   L+ LNL      G    +LG L  +  LDLS+N L G I
Sbjct: 577 LDLSYNSLSGTIPQSFGSLNYLQVLNLGHNQLTGNIPDSLGGLKAIGVLDLSHNNLQGYI 636

Query: 160 PQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLP 209
           P   G L+ L   DVS+N + GPIP G Q  TF  S +D N GLCG PLP
Sbjct: 637 PGALGSLSFLSDLDVSNNNLTGPIPSGGQLTTFPASRYDNNSGLCGVPLP 686

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1263160|emb|CAA61510.1| leucine-rich repeat/receptor protein kinase [Oryza sativa Indica Group]

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 80/209 (38%), Positives = 118/209 (56%), Gaps = 7/209 (3%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           D+  ++L+ N LTGP+P  L NL   + + L  N LTG +P  IG  K +  L L +  +
Sbjct: 410 DVTPVRLAKNFLTGPVPAGLFNLPQANMVELTDNLLTGELPDVIGGDK-IGMLLLGNNGI 468

Query: 66  TGRIPSEIGKL---KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCT 122
            GRIP  IG L   + ++  SNNF G++P    N  NL+ + +S N L G +P  L  C 
Sbjct: 469 GGRIPPAIGNLPALQTLSLESNNFSGALPPEIGNLKNLSRLNVSGNRLTGAIPDELIPCA 528

Query: 123 ELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV 179
            L  ++L   G       ++ +L +L +L++S N+L+G++P +   +TSL   DVS N +
Sbjct: 529 SLAAVDLSRNGFSGEIPESITSLKILCTLNVSRNRLTGELPPEMSNMTSLTTLDVSYNSL 588

Query: 180 IGPIPQGKQFNTFETSSFDGNPGLCGEPL 208
            GP+P   QF  F  SSF GNPGLCG P+
Sbjct: 589 SGPVPMQGQFLVFNESSFVGNPGLCGGPV 617

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 123/262 (46%), Gaps = 60/262 (22%)

Query: 10   IKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI 69
            I  S NQL G IP  L N + +  L L  NQ+    PF +G+   L  L L H +  G I
Sbjct: 1617 IDFSYNQLEGQIPRSLGNCKELEILNLGNNQINDTFPFWLGSFPELQLLILRHNRFHGAI 1676

Query: 70   PS-----EIGKLKPIAASSNNFRGS---------IPQTCKNEANLAM------------- 102
             +     E   L  I  S NNF G+         +  +  +E N +              
Sbjct: 1677 ENPRANFEFPTLCIIDLSYNNFAGNLPAGYFLTWVAMSRVDEENFSYMQSMTGFVLIRTY 1736

Query: 103  ------------------------------IELSSNLLEGRVPKSLASCTELKFLNLVSE 132
                                          I+LSSN   G +PKS+     L  LN+ S 
Sbjct: 1737 RLYENYNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSN 1796

Query: 133  ---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQF 189
               G   S LGNL  LE+LDLS N LSG+IPQQ   +T LEFF+VS N ++GPIPQGKQF
Sbjct: 1797 SLTGHIPSFLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQF 1856

Query: 190  NTFETSSFDGNPGLCGEPLPKK 211
            NTF+  S++GNPGLCG PL K+
Sbjct: 1857 NTFQNDSYEGNPGLCGNPLSKE 1878

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302797599|ref|XP_002980560.1| hypothetical protein SELMODRAFT_112929 [Selaginella moellendorffii] gi|300151566|gb|EFJ18211.1| hypothetical protein SELMODRAFT_112929 [Selaginella moellendorffii]

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 124/209 (59%), Gaps = 12/209 (5%)

Query: 10  IKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI 69
           + LS N L+G IP  + N   +  + L +N L G IP EIG+L  L  L L + QL+G I
Sbjct: 290 LNLSRNDLSGEIPTSISNGNALQLIDLSRNTLNGTIPPEIGDLYMLEMLDLSYNQLSGSI 349

Query: 70  PSEIGKLKPIAA------SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP-KSLASCT 122
           P+ +  L  +AA       SNN  GSIP    N   LA ++LSSN L+G++P  ++A  T
Sbjct: 350 PTALDDLLSLAAFNEIYLYSNNLNGSIPDAIANLTRLATLDLSSNHLDGQIPGPAIAQLT 409

Query: 123 ELKFLNLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV 179
            L+ ++L +    G   S L +L  L +LDLS N+LSG IP +  +L+SLE+F V++N +
Sbjct: 410 GLQVMDLSANDLTGNIPSELADLGQLATLDLSWNQLSGVIPPEIHDLSSLEYFSVANNNL 469

Query: 180 IGPIPQGKQFNTFETSSFDGNPGLCGEPL 208
            GPIP   +  +F+ SSF+ N GLCG PL
Sbjct: 470 SGPIP--AELGSFDASSFEDNAGLCGFPL 496

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128143|ref|XP_002329092.1| predicted protein [Populus trichocarpa] gi|222869761|gb|EEF06892.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/261 (37%), Positives = 126/261 (48%), Gaps = 59/261 (22%)

Query: 10  IKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI 69
           I LS NQL G +P  L N   +  L L  N+++   PF + NL  L  L L   Q  G I
Sbjct: 585 IDLSHNQLEGQLPRSLTNCRMMEILDLSYNRISDKFPFWLANLPELQVLILRSNQFFGSI 644

Query: 70  PS-----EIGKLKPIAASSNNFRGSIPQ-------------------------------- 92
            S     E  KL+ I  S NNF G +P                                 
Sbjct: 645 KSPGAMLEFRKLQIIDLSYNNFTGILPSEFFQTLRSMRFSDLKEFTYMQTIHTFQLPVYS 704

Query: 93  ---TCKNEANLA----------------MIELSSNLLEGRVPKSLASCTELKFLNLVS-- 131
              T + E NLA                 I+LSSN  +G +P+S+ +  ++  LNL +  
Sbjct: 705 RDFTYRYEINLANKGVYMKYWQIPNVIAAIDLSSNAFQGDIPQSIGTREKVNALNLSNNH 764

Query: 132 -EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFN 190
             G   S LGNL  LESLDLS N LSG+IPQ   +LT L +F+VS N + GPIPQGKQFN
Sbjct: 765 LSGDIPSVLGNLANLESLDLSQNMLSGEIPQYLTQLTFLAYFNVSHNQLEGPIPQGKQFN 824

Query: 191 TFETSSFDGNPGLCGEPLPKK 211
           TF+ SS++GN GL  + LPKK
Sbjct: 825 TFDNSSYEGNSGLYMKHLPKK 845

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115469988|ref|NP_001058593.1| Os06g0717200 [Oryza sativa Japonica Group] gi|18855025|gb|AAL79717.1|AC091774_8 putative receptor protein kinase [Oryza sativa Japonica Group] gi|53791794|dbj|BAD53588.1| putative leucine-rich repeat/receptor protein kinase [Oryza sativa Japonica Group] gi|54291041|dbj|BAD61718.1| putative leucine-rich repeat/receptor protein kinase [Oryza sativa Japonica Group] gi|56790015|dbj|BAD82811.1| CLV1-like LRR receptor kinase [Oryza sativa Japonica Group] gi|56790017|dbj|BAD82812.1| CLV1-like LRR receptor kinase [Oryza sativa Japonica Group] gi|113596633|dbj|BAF20507.1| Os06g0717200 [Oryza sativa Japonica Group]

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 7/211 (3%)

Query: 4   CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
           C  +  ++L+ N LTGP+P  L NL   + + L  N LTG +P  IG  K +  L L + 
Sbjct: 412 CKTLTRVRLAKNFLTGPVPAGLFNLPQANMVELTDNLLTGELPDVIGGDK-IGMLLLGNN 470

Query: 64  QLTGRIPSEIGKL---KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
            + GRIP  IG L   + ++  SNNF G++P    N  NL+ + +S N L G +P  L  
Sbjct: 471 GIGGRIPPAIGNLPALQTLSLESNNFSGALPPEIGNLKNLSRLNVSGNALTGAIPDELIR 530

Query: 121 CTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           C  L  ++L   G       ++ +L +L +L++S N+L+G++P +   +TSL   DVS N
Sbjct: 531 CASLAAVDLSRNGFSGEIPESITSLKILCTLNVSRNRLTGELPPEMSNMTSLTTLDVSYN 590

Query: 178 LVIGPIPQGKQFNTFETSSFDGNPGLCGEPL 208
            + GP+P   QF  F  SSF GNPGLCG P+
Sbjct: 591 SLSGPVPMQGQFLVFNESSFVGNPGLCGGPV 621

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
UNIPROTKB|Q5Z9N5	994	P0481E08.42 "Os06g0717200 prot	0.962	0.205	0.379	1.5e-30
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.962	0.163	0.382	1e-29
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.962	0.162	0.377	1e-29
TAIR|locus:2169975	993	HSL2 "HAESA-like 2" [Arabidops	0.943	0.201	0.401	3.8e-29
TAIR|locus:2034725	882	AT1G12460 [Arabidopsis thalian	0.943	0.226	0.378	2.2e-28
TAIR|locus:2091260	372	DRT100 "DNA-DAMAGE REPAIR/TOLE	0.938	0.534	0.380	3.1e-28
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.952	0.183	0.382	4.2e-28
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.896	0.185	0.391	6e-28
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.915	0.185	0.395	6.2e-28
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.830	0.157	0.412	1.1e-27

UNIPROTKB|Q5Z9N5 P0481E08.42 "Os06g0717200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 348 (127.6 bits), Expect = 1.5e-30, P = 1.5e-30
 Identities = 80/211 (37%), Positives = 118/211 (55%)

Query:     4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
             C  +  ++L+ N LTGP+P  L NL   + + L  N LTG +P  IG  K +  L L + 
Sbjct:   412 CKTLTRVRLAKNFLTGPVPAGLFNLPQANMVELTDNLLTGELPDVIGGDK-IGMLLLGNN 470

Query:    64 QLTGRIPSEIGKL---KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
              + GRIP  IG L   + ++  SNNF G++P    N  NL+ + +S N L G +P  L  
Sbjct:   471 GIGGRIPPAIGNLPALQTLSLESNNFSGALPPEIGNLKNLSRLNVSGNALTGAIPDELIR 530

Query:   121 CTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
             C  L  ++L   G       ++ +L +L +L++S N+L+G++P +   +TSL   DVS N
Sbjct:   531 CASLAAVDLSRNGFSGEIPESITSLKILCTLNVSRNRLTGELPPEMSNMTSLTTLDVSYN 590

Query:   178 LVIGPIPQGKQFNTFETSSFDGNPGLCGEPL 208
              + GP+P   QF  F  SSF GNPGLCG P+
Sbjct:   591 SLSGPVPMQGQFLVFNESSFVGNPGLCGGPV 621

GO:0010080 "regulation of floral meristem growth" evidence=IMP

GO:0048833 "specification of floral organ number" evidence=IMP

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 83/217 (38%), Positives = 115/217 (52%)

Query:     3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEH 62
             LC  + +I L+ N L+GPIP WL  L  +  L L  NQ    +P E+ N   L  L L+ 
Sbjct:   645 LCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDG 704

Query:    63 KQLTGRIPSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP---- 115
               L G IP EIG L  +       N F GS+PQ     + L  + LS N L G +P    
Sbjct:   705 NSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIG 764

Query:   116 --KSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFD 173
               + L S  +L + N    G   ST+G L  LE+LDLS+N+L+G++P   G++ SL + +
Sbjct:   765 QLQDLQSALDLSYNNFT--GDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLN 822

Query:   174 VSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLPK 210
             VS N + G +   KQF+ +   SF GN GLCG PL +
Sbjct:   823 VSFNNLGGKLK--KQFSRWPADSFLGNTGLCGSPLSR 857

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 82/217 (37%), Positives = 118/217 (54%)

Query:     1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
             + LC  + +I L+ N L+G IP WL  L  +  L L  N+  G +P EI +L N+ TL L
Sbjct:   644 LGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFL 703

Query:    61 EHKQLTGRIPSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP-- 115
             +   L G IP EIG L+ + A     N   G +P T    + L  + LS N L G +P  
Sbjct:   704 DGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVE 763

Query:   116 ----KSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEF 171
                 + L S  +L + N    G   ST+  L  LESLDLS+N+L G++P Q G++ SL +
Sbjct:   764 IGQLQDLQSALDLSYNNFT--GRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGY 821

Query:   172 FDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL 208
              ++S N + G +   KQF+ ++  +F GN GLCG PL
Sbjct:   822 LNLSYNNLEGKLK--KQFSRWQADAFVGNAGLCGSPL 856

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2169975 HSL2 "HAESA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 3.8e-29, P = 3.8e-29
 Identities = 86/214 (40%), Positives = 121/214 (56%)

Query:     4 CFDIIYIKLSGNQLTGPIP--YWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLE 61
             C  + YI+++ N+L+G +P  +W   L  +       NQL G IP  I   ++LS L + 
Sbjct:   410 CHSLNYIRMADNKLSGEVPARFWELPLTRLELA--NNNQLQGSIPPSISKARHLSQLEIS 467

Query:    62 HKQLTGRIP---SEIGKLKPIAASSNNFRGSIPQTCKNEA-NLAMIELSSNLLEGRVPKS 117
                 +G IP    ++  L+ I  S N+F GSIP +C N+  NL  +E+  N+L+G +P S
Sbjct:   468 ANNFSGVIPVKLCDLRDLRVIDLSRNSFLGSIP-SCINKLKNLERVEMQENMLDGEIPSS 526

Query:   118 LASCTELKFLNLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDV 174
             ++SCTEL  LNL +    G     LG+L VL  LDLSNN+L+G+IP +   L  L  F+V
Sbjct:   527 VSSCTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPAELLRL-KLNQFNV 585

Query:   175 SDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL 208
             SDN + G IP G Q + F  S F GNP LC   L
Sbjct:   586 SDNKLYGKIPSGFQQDIFRPS-FLGNPNLCAPNL 618

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2034725 AT1G12460 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 2.2e-28, P = 2.2e-28
 Identities = 78/206 (37%), Positives = 114/206 (55%)

Query:     9 YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
             ++  S N+LTG IP  +   +++  L LE N+L G IP  IG +++LS + L +  + G 
Sbjct:   288 FLDASSNELTGRIPTGVMGCKSLKLLDLESNKLNGSIPGSIGKMESLSVIRLGNNSIDGV 347

Query:    69 IPSEIGKLKPIAASS--N-NFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
             IP +IG L+ +   +  N N  G +P+   N   L  +++S N LEG++ K L + T +K
Sbjct:   348 IPRDIGSLEFLQVLNLHNLNLIGEVPEDISNCRVLLELDVSGNDLEGKISKKLLNLTNIK 407

Query:   126 FLNLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGP 182
              L+L      G     LGNL  ++ LDLS N LSG IP   G L +L  F+VS N + G 
Sbjct:   408 ILDLHRNRLNGSIPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGV 467

Query:   183 IPQGKQFNTFETSSFDGNPGLCGEPL 208
             IP       F +S+F  NP LCG+PL
Sbjct:   468 IPPVPMIQAFGSSAFSNNPFLCGDPL 493

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2091260 DRT100 "DNA-DAMAGE REPAIR/TOLERATION 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 78/205 (38%), Positives = 108/205 (52%)

Query:    10 IKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI 69
             + L+ NQ++G IP  L +L  +  L L +N +TG IP + G+LK LS + L   +LTG I
Sbjct:   164 LNLAENQMSGEIPASLTSLIELKHLELTENGITGVIPADFGSLKMLSRVLLGRNELTGSI 223

Query:    70 PSEIGKLKPIA---ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKF 126
             P  I  ++ +A    S N+  G IP+   N   L+++ L  N L G +P SL S + L  
Sbjct:   224 PESISGMERLADLDLSKNHIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDV 283

Query:   127 LNL---VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183
              NL     EG      G+   L SLDLS+N LSG+IP        +   D+S N + G I
Sbjct:   284 ANLSRNALEGTIPDVFGSKTYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLCGRI 343

Query:   184 PQGKQFNTFETSSFDGNPGLCGEPL 208
             P G  F+  E +SF  N  LCG PL
Sbjct:   344 PTGFPFDHLEATSFSDNQCLCGGPL 368

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0009650 "UV protection" evidence=IGI

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009411 "response to UV" evidence=IGI

GO:0009507 "chloroplast" evidence=ISS

GO:0042493 "response to drug" evidence=IGI

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 4.2e-28, P = 4.2e-28
 Identities = 81/212 (38%), Positives = 115/212 (54%)

Query:     4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
             C  +  ++L+ N  TG +P  +  L  + TL +  N+LTG +P EI N K L  L +   
Sbjct:   504 CSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCN 563

Query:    64 QLTGRIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
               +G +PSE+G   +L+ +  S+NN  G+IP    N + L  +++  NL  G +P+ L S
Sbjct:   564 NFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGS 623

Query:   121 CTELKF-LNLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSD 176
              T L+  LNL      G     L NL++LE L L+NN LSG+IP  F  L+SL  ++ S 
Sbjct:   624 LTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSY 683

Query:   177 NLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL 208
             N + GPIP          SSF GN GLCG PL
Sbjct:   684 NSLTGPIPL---LRNISMSSFIGNEGLCGPPL 712

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 324 (119.1 bits), Expect = 6.0e-28, P = 6.0e-28
 Identities = 78/199 (39%), Positives = 108/199 (54%)

Query:    15 NQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG 74
             N L+G IP  + NL  ++ L L  N+ +G IP+ + NL NL +L L    L+G IPSE+ 
Sbjct:   434 NNLSGSIPLAIGNLTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELF 493

Query:    75 KLKPIA----ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL--- 127
              ++ ++     S NN  GSIPQ   +  NL      SN L G++P +L  C  L++L   
Sbjct:   494 NIQTLSIMINVSKNNLEGSIPQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQ 553

Query:   128 -NLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG 186
              NL+S G   S LG L  LE+LDLS+N LSGQIP    ++T L   ++S N  +G +P  
Sbjct:   554 NNLLS-GSIPSALGQLKGLETLDLSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTI 612

Query:   187 KQFNTFETSSFDGNPGLCG 205
               F      S  GN  LCG
Sbjct:   613 GAFAAASGISIQGNAKLCG 631

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 6.2e-28, P = 6.2e-28
 Identities = 79/200 (39%), Positives = 110/200 (55%)

Query:    12 LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
             LS N +TG IP  + N+  +S L L  N++TG +P  I N+  +S L L   +L+G+IPS
Sbjct:   485 LSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPS 544

Query:    72 EIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
              I     L+ +  SSN F   IP T  N   L  + LS N L+  +P+ L   ++L+ L+
Sbjct:   545 GIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLD 604

Query:   129 LVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ 185
             L     +G  SS   +L  LE LDLS+N LSGQIP  F ++ +L   DVS N + GPIP 
Sbjct:   605 LSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPD 664

Query:   186 GKQFNTFETSSFDGNPGLCG 205
                F      +F+GN  LCG
Sbjct:   665 NAAFRNAPPDAFEGNKDLCG 684

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 75/182 (41%), Positives = 104/182 (57%)

Query:    10 IKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI 69
             + LS N+LTG IP  L NL+N+  L+L +N LTG IP EIGN+++++ L L   +LTG I
Sbjct:   227 LALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSI 286

Query:    70 PSEIGKLKPIAASS---NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKF 126
             PS +G LK +   S   N   G IP    N  ++  +ELS+N L G +P SL +   L  
Sbjct:   287 PSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTI 346

Query:   127 LNLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183
             L L      G+    LGN+  +  L L+NNKL+G IP  FG L +L +  +  N + G I
Sbjct:   347 LYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVI 406

Query:   184 PQ 185
             PQ
Sbjct:   407 PQ 408

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI2G34340.1 annotation not avaliable (1035 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  106 bits (265), Expect = 2e-26
 Identities = 69/190 (36%), Positives = 95/190 (50%), Gaps = 8/190 (4%)

Query: 2   SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLE 61
           +    + Y+ LS N  TG IP    ++ N+ TL L  N L+G IP +IG+  +L  L L 
Sbjct: 115 TTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG 172

Query: 62  HKQLTGRIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSL 118
              L G+IP+ +     L+ +  +SN   G IP+      +L  I L  N L G +P  +
Sbjct: 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232

Query: 119 ASCTELKFLNLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVS 175
              T L  L+LV     G   S+LGNL  L+ L L  NKLSG IP     L  L   D+S
Sbjct: 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Query: 176 DNLVIGPIPQ 185
           DN + G IP+
Sbjct: 293 DNSLSGEIPE 302

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (257), Expect = 2e-25
 Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 6/185 (3%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           +I + LS N L+G IP  +  L+N+  L L  N  TG IP  + +L  L  L L   + +
Sbjct: 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Query: 67  GRIPSEIGK---LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTE 123
           G IP  +GK   L  +  S+NN  G IP+   +  NL  + L SN LEG +PKSL +C  
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405

Query: 124 LKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180
           L+ + L      G   S    L ++  LD+SNN L G+I  +  ++ SL+   ++ N   
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 181 GPIPQ 185
           G +P 
Sbjct: 466 GGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  100 bits (250), Expect = 2e-24
 Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 6/184 (3%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
           ++ L+ NQL G IP  L  ++++  ++L  N L+G IP+EIG L +L+ L L +  LTG 
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251

Query: 69  IPSEIGKLKPIA---ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
           IPS +G LK +       N   G IP +  +   L  ++LS N L G +P+ +     L+
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Query: 126 FLNLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGP 182
            L+L S    G     L +L  L+ L L +NK SG+IP+  G+  +L   D+S N + G 
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Query: 183 IPQG 186
           IP+G
Sbjct: 372 IPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 99.5 bits (248), Expect = 3e-24
 Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 6/184 (3%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           ++ Y+ L  N+L+GPIP  + +L+ + +L L  N L+G IP  +  L+NL  L L     
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320

Query: 66  TGRIP---SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCT 122
           TG+IP   + + +L+ +   SN F G IP+      NL +++LS+N L G +P+ L S  
Sbjct: 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380

Query: 123 ELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV 179
            L  L L S   EG    +LG    L  + L +N  SG++P +F +L  + F D+S+N +
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440

Query: 180 IGPI 183
            G I
Sbjct: 441 QGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 99.2 bits (247), Expect = 4e-24
 Identities = 70/189 (37%), Positives = 90/189 (47%), Gaps = 24/189 (12%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           I     +  + L GN L G IP  L NL ++  L L  NQL G IP E+G +K+L  + L
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 61  EHKQLTGRIPSEIGKLKPIAASS---NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS 117
            +  L+G IP EIG L  +       NN  G IP +  N  NL  + L  N L G +P S
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279

Query: 118 LASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                           IFS  L  LI   SLDLS+N LSG+IP+   +L +LE   +  N
Sbjct: 280 ----------------IFS--LQKLI---SLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 178 LVIGPIPQG 186
              G IP  
Sbjct: 319 NFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.7 bits (238), Expect = 7e-23
 Identities = 68/183 (37%), Positives = 96/183 (52%), Gaps = 11/183 (6%)

Query: 10  IKLSGNQLTGPIPYWLENL-ENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
           I LS NQL+GPIP  +     ++  L L  N  TG IP   G++ NL TL L +  L+G 
Sbjct: 98  INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE 155

Query: 69  IPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
           IP++IG    LK +    N   G IP +  N  +L  + L+SN L G++P+ L     LK
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215

Query: 126 FL----NLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG 181
           ++    N +S  I    +G L  L  LDL  N L+G IP   G L +L++  +  N + G
Sbjct: 216 WIYLGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Query: 182 PIP 184
           PIP
Sbjct: 275 PIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.4 bits (232), Expect = 4e-22
 Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 5/211 (2%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +  C  +  ++L  N  +G +P     L  +  L +  N L G I     ++ +L  L L
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459

Query: 61  EHKQLTGRIPSEIG--KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSL 118
              +  G +P   G  +L+ +  S N F G++P+   + + L  ++LS N L G +P  L
Sbjct: 460 ARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519

Query: 119 ASCTELKFLNLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVS 175
           +SC +L  L+L      G   ++   + VL  LDLS N+LSG+IP+  G + SL   ++S
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 176 DNLVIGPIPQGKQFNTFETSSFDGNPGLCGE 206
            N + G +P    F     S+  GN  LCG 
Sbjct: 580 HNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.4 bits (193), Expect = 7e-17
 Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 9/165 (5%)

Query: 27  NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI----GKLKPIAAS 82
           N   + ++ L    ++G I   I  L  + T+ L + QL+G IP +I      L+ +  S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 83  SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL---VSEGIFSSTL 139
           +NNF GSIP+   +  NL  ++LS+N+L G +P  + S + LK L+L   V  G   ++L
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 140 GNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
            NL  LE L L++N+L GQIP++ G++ SL++  +  N + G IP
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 41/129 (31%), Positives = 54/129 (41%), Gaps = 35/129 (27%)

Query: 87  RGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLE 146
           RG IP       +L  I LS N + G +P SL                     G++  LE
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSL---------------------GSITSLE 469

Query: 147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP--------QGKQFNTFETSSFD 198
            LDLS N  +G IP+  G+LTSL   +++ N + G +P            FN      F 
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN------FT 523

Query: 199 GNPGLCGEP 207
            N GLCG P
Sbjct: 524 DNAGLCGIP 532

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.0 bits (166), Expect = 2e-13
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSL-ASCTEL 124
            G   +   ++  I  S  N  G I         +  I LS+N L G +P  +  + + L
Sbjct: 61  QGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120

Query: 125 KFLNLVSEGIFSSTL--GNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGP 182
           ++LNL S   F+ ++  G++  LE+LDLSNN LSG+IP   G  +SL+  D+  N+++G 
Sbjct: 121 RYLNL-SNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179

Query: 183 IP 184
           IP
Sbjct: 180 IP 181

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 31  ISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGK---LKPIAASSNNFR 87
           I  L L+   L G IP +I  L++L ++ L    + G IP  +G    L+ +  S N+F 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 88  GSIPQTCKNEANLAMIELSSNLLEGRVPKSL 118
           GSIP++     +L ++ L+ N L GRVP +L
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 10  IKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI 69
           I LSGN + G IP  L ++ ++  L L  N   G IP  +G L +L  L L    L+GR+
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 70  PSEIGKLKPIAASSNNF 86
           P+ +G    +  +S NF
Sbjct: 507 PAALGGR-LLHRASFNF 522

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 13/185 (7%)

Query: 7   IIYIKLSGNQLTGPIPYWLENL-ENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           +  + L  N +T  IP  +  L  N+  L L  N++   +P  + NL NL  L L    L
Sbjct: 118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDL 175

Query: 66  TGRIPSEIGKLKPI---AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCT 122
           +  +P  +  L  +     S N     +P   +  + L  ++LS+N +   +  SL++  
Sbjct: 176 S-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK 232

Query: 123 ELKFLNLVS--EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180
            L  L L +        ++GNL  LE+LDLSNN++S       G LT+L   D+S N + 
Sbjct: 233 NLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLS 290

Query: 181 GPIPQ 185
             +P 
Sbjct: 291 NALPL 295

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 22/110 (20%)

Query: 82  SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGN 141
           SS +       TC N + +  I+LS   + G++                     SS +  
Sbjct: 53  SSADVCLWQGITCNNSSRVVSIDLSGKNISGKI---------------------SSAIFR 91

Query: 142 LIVLESLDLSNNKLSGQIPQQ-FGELTSLEFFDVSDNLVIGPIPQGKQFN 190
           L  +++++LSNN+LSG IP   F   +SL + ++S+N   G IP+G   N
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 124 LKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           LK L+L +     I       L  L+ LDLS N L+   P+ F  L SL   D+S N
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.76
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.7
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.67
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.58
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.55
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.48
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.38
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.32
PLN03150	623	hypothetical protein; Provisional	99.29
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
PLN03150	623	hypothetical protein; Provisional	99.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.83
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.67
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.67
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.61
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.47
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.37
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.06
PRK15386	426	type III secretion protein GogB; Provisional	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.93
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.92
PRK15386	426	type III secretion protein GogB; Provisional	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.81
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.74
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.66
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.39
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.23
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.38
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.33
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.43
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.15
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.75
smart00370	26	LRR Leucine-rich repeats, outliers.	92.75
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.72
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.12
KOG4308	478	consensus LRR-containing protein [Function unknown	89.92
KOG4308	478	consensus LRR-containing protein [Function unknown	89.58
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	89.18
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.0
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.08
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.31
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.07
KOG1947	482	consensus Leucine rich repeat proteins, some prote	80.48
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	80.19

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=2.7e-25  Score=192.65  Aligned_cols=205  Identities=30%  Similarity=0.533  Sum_probs=149.7

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc--cCCceEE
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI--GKLKPIA   80 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~l~   80 (212)
                      .+++|+.|++++|.+.+..|..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+  .+|+.|+
T Consensus       402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~  481 (968)
T PLN00113        402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD  481 (968)
T ss_pred             CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEE
Confidence            34555555555555555555555555556666666655555555555556666666666666654444432  3567777


Q ss_pred             cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeee
Q 042715           81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSG  157 (212)
Q Consensus        81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~  157 (212)
                      +++|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+.   +..+..+++|+.|++++|++.+
T Consensus       482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG  561 (968)
T ss_pred             CcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence            7777777777777777888888888888888788888888888888888888763   4667788888889999888888


Q ss_pred             ecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCC
Q 042715          158 QIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       158 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      .+|..+..+++|++|++++|.+.+.+|....+..+....+.+||..|+.+
T Consensus       562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            88888888888999999999888888887777777788888999888754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=3e-24  Score=186.10  Aligned_cols=199  Identities=33%  Similarity=0.445  Sum_probs=104.6

Q ss_pred             ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCceEE
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIA   80 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~   80 (212)
                      +++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+   .+|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            3445555555555544555555556666666666665555555555556666666666655554444332   3345555


Q ss_pred             cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCcccccEEEccCCeeee
Q 042715           81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSG  157 (212)
Q Consensus        81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i~~  157 (212)
                      +++|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+   .+..+..+++|++|++++|.+.+
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            555555555555555555555555555555545555555555555555555543   22334445555555555555554


Q ss_pred             ecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCC
Q 042715          158 QIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPG  202 (212)
Q Consensus       158 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~  202 (212)
                      .+|..+..+++|++|++++|.+.+.+|.. ..+++++.+++.+|..
T Consensus       299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence            45555555555555555555554443332 2444445555544443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=8.5e-24  Score=165.46  Aligned_cols=207  Identities=20%  Similarity=0.231  Sum_probs=129.4

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCc
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLK   77 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~   77 (212)
                      |.++++|+.|++..|.|....--.|.++++|+.|.+..|.|.....++|-.+.++++|++..|++...--.   ++.+|+
T Consensus       217 Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~  296 (873)
T KOG4194|consen  217 FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLE  296 (873)
T ss_pred             hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhh
Confidence            34577788888888877733344677777777777777777766666777777777777777777633322   334556


Q ss_pred             eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---------------------
Q 042715           78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---------------------  136 (212)
Q Consensus        78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---------------------  136 (212)
                      .|++++|.+....+..|...++|++|++++|.++...+..+..+..|+.|++++|.+..                     
T Consensus       297 ~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  297 QLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             hhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence            67777777776666667667777777777777765555555555666666666654321                     


Q ss_pred             ---------cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-ccccccccccccCCCccCC
Q 042715          137 ---------STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-QFNTFETSSFDGNPGLCGE  206 (212)
Q Consensus       137 ---------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~l~~l~l~~n~~~~~~  206 (212)
                               ..|.+++.|+.|.+.+|++..+...+|.+++.|++|||.+|.+.+.=+... .+ .+++|.+..-.++|+|
T Consensus       377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC  455 (873)
T ss_pred             EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence                     334455555566666666554444556666666666666666554333322 33 5666666666666666


Q ss_pred             CC
Q 042715          207 PL  208 (212)
Q Consensus       207 ~~  208 (212)
                      .+
T Consensus       456 ql  457 (873)
T KOG4194|consen  456 QL  457 (873)
T ss_pred             cH
Confidence            54

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=9.1e-23  Score=159.75  Aligned_cols=207  Identities=20%  Similarity=0.199  Sum_probs=164.2

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccccee---cCCccccCCc
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG---RIPSEIGKLK   77 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~l~   77 (212)
                      |.++.+|.+|.++.|.++...+..|..+++|+.|++..|.|.-...-.|..+++|+.|.+..|.+..   -..-++.+++
T Consensus       193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme  272 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME  272 (873)
T ss_pred             ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence            5678899999999999997777789999999999999999986667789999999999999998872   2233567889


Q ss_pred             eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCC-------------
Q 042715           78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGN-------------  141 (212)
Q Consensus        78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~-------------  141 (212)
                      +|++..|+++..-..++.+++.|+.|++++|.++...++.|..++.|+.|++++|++..   ..|..             
T Consensus       273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence            99999999986666777889999999999999998888999999999999999997743   22322             


Q ss_pred             -----------cccccEEEccCCeeeee---cChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCC
Q 042715          142 -----------LIVLESLDLSNNKLSGQ---IPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGE  206 (212)
Q Consensus       142 -----------~~~L~~L~l~~n~i~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~  206 (212)
                                 +.+|+.|||..|.++..   -..+|.++++|+.|++.+|++...... ...++.+++|++.+|+...-.
T Consensus       353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq  432 (873)
T KOG4194|consen  353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ  432 (873)
T ss_pred             hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec
Confidence                       34566666666665432   234667788888888888888644433 237888888899888876544


Q ss_pred             C
Q 042715          207 P  207 (212)
Q Consensus       207 ~  207 (212)
                      +
T Consensus       433 ~  433 (873)
T KOG4194|consen  433 P  433 (873)
T ss_pred             c
Confidence            3

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.80  E-value=8.9e-22  Score=132.54  Aligned_cols=174  Identities=28%  Similarity=0.441  Sum_probs=138.4

Q ss_pred             ccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCceEEcccceeeeeCCCcccCCCcccEE
Q 042715           27 NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIAASSNNFRGSIPQTCKNEANLAMI  103 (212)
Q Consensus        27 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L  103 (212)
                      .+.+++.|.+++|+++ ..|..++.+.+|+.|++.+|.++ ..|.++   ++|+.|++.-|++. .+|..|+.++.|..|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            5677788888888888 45556778888888888888887 666544   45566777766665 778889999999999


Q ss_pred             EccCCccc-ccCCcccccCCcccEEEccCCCC--CCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee
Q 042715          104 ELSSNLLE-GRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       104 ~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      ++.+|.+. ...|..|..+..|+-|.+++|.+  .+..++.+++|+.|.+.+|.+. ..|.+++.+..|+.|.+++|.+.
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            99998875 35788888889999999999976  6788899999999999999887 78999999999999999999998


Q ss_pred             cCCCCCccc---ccccccccccCCCcc
Q 042715          181 GPIPQGKQF---NTFETSSFDGNPGLC  204 (212)
Q Consensus       181 ~~~~~~~~~---~~l~~l~l~~n~~~~  204 (212)
                      ..+|..+.+   .+-..+.+.+|||..
T Consensus       187 vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  187 VLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            777776533   233556888899864

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.77  E-value=6.9e-21  Score=142.84  Aligned_cols=204  Identities=23%  Similarity=0.282  Sum_probs=141.8

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccc-ccceecCCc----cccC----
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEH-KQLTGRIPS----EIGK----   75 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~----~l~~----   75 (212)
                      +..+.+.+..|+|+...+++|..+++|++||+++|.|+.+.|++|.+++.+..|-+.+ |+|+ .+|+    +++.    
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            3456788999999977778999999999999999999999999999999988876555 7776 4442    2222    


Q ss_pred             --------------------CceEEcccceeeeeCCCcccCCCcccEEEccCCccc--------------------c---
Q 042715           76 --------------------LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE--------------------G---  112 (212)
Q Consensus        76 --------------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~---  112 (212)
                                          +..|.+-+|.+.......+..+..++++++..|.+-                    +   
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence                                233333444443222234445555555555444310                    0   


Q ss_pred             ------------------------c---------------CCcccccCCcccEEEccCCCCC---CcccCCcccccEEEc
Q 042715          113 ------------------------R---------------VPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDL  150 (212)
Q Consensus       113 ------------------------~---------------~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l  150 (212)
                                              .               ....|..+++|+.+++++|++.   +.+|.+...+++|.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence                                    0               0013455667777777777663   366777777777777


Q ss_pred             cCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCCCC
Q 042715          151 SNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEPLP  209 (212)
Q Consensus       151 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~~  209 (212)
                      ..|++...-...|.++..|+.|+|.+|+|+..-|- +.....+.++++.+|||.|+|.++
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA  365 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence            77777655566788889999999999999865554 347788999999999999999864

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.76  E-value=2.9e-20  Score=147.46  Aligned_cols=196  Identities=24%  Similarity=0.294  Sum_probs=114.3

Q ss_pred             CceeecEEEccCCccc-cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc-cC---Cc
Q 042715            3 LCFDIIYIKLSGNQLT-GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI-GK---LK   77 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~---l~   77 (212)
                      .++.|+.+++.+|++. .-+|+.+..+..|+.||+++|++. ..|..+...+++-+|++++|.|. .+|..+ .+   |-
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLL  153 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHh
Confidence            3455555555555544 224444555666666666666666 45556666666666666666665 444332 22   34


Q ss_pred             eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC----CCcccCCcccccEEEccCC
Q 042715           78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI----FSSTLGNLIVLESLDLSNN  153 (212)
Q Consensus        78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~----~~~~~~~~~~L~~L~l~~n  153 (212)
                      .|++++|++. .+|+.++.+..|++|.+++|.+....-..+..+.+|..|++++.+.    +|.++..+.+|..+|++.|
T Consensus       154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            4556666655 4555555556666666666655433333444455555566655433    3455666677777777777


Q ss_pred             eeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCC
Q 042715          154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPG  202 (212)
Q Consensus       154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~  202 (212)
                      .+. .+|+.+..+++|++|+|++|+++..--....-.+++.|+++.|..
T Consensus       233 ~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  233 NLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL  280 (1255)
T ss_pred             CCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence            776 677777777777777777777764333333444566666666653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.73  E-value=1.1e-19  Score=144.26  Aligned_cols=195  Identities=29%  Similarity=0.319  Sum_probs=147.8

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccCCceE
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGKLKPI   79 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~l   79 (212)
                      +++.|+.||+++|++. ..|..+...+++-+|++++|.|..++-..|.++..|-+|++++|++. .+|+.   +..|++|
T Consensus       101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL  178 (1255)
T ss_pred             ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence            5788999999999998 88888888899999999999999655566778899999999999987 66653   4556777


Q ss_pred             Ecccceeee-------------------------eCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC
Q 042715           80 AASSNNFRG-------------------------SIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI  134 (212)
Q Consensus        80 ~l~~n~~~~-------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  134 (212)
                      .+++|++..                         .+|..+..+.+|..++++.|.+. ..|+.+..+++|+.|++++|.+
T Consensus       179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI  257 (1255)
T ss_pred             hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence            777775432                         34555666667777777777766 6677777777788888888877


Q ss_pred             CC--cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee--cCCCCCcccccccccccccCC
Q 042715          135 FS--STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI--GPIPQGKQFNTFETSSFDGNP  201 (212)
Q Consensus       135 ~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~l~~l~l~~n~  201 (212)
                      +.  ...+...+|++|+++.|+++ ..|.++.+++.|+.|.+.+|+++  |.+.-..++.+++.+...+|-
T Consensus       258 teL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~  327 (1255)
T KOG0444|consen  258 TELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK  327 (1255)
T ss_pred             eeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence            55  33345667788888888887 78888888888888888888775  333334477888888887775

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.71  E-value=2.6e-19  Score=134.97  Aligned_cols=197  Identities=25%  Similarity=0.364  Sum_probs=131.7

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccccee---------------
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG---------------   67 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------   67 (212)
                      ++.++..||+.+|.+. ..|+....+.+|.+||+++|.|+ ..|..++++ .|+.|-+.+|.+..               
T Consensus       250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK  326 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK  326 (565)
T ss_pred             ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence            4666777777777777 66776777777777777777777 566677777 77777777775420               


Q ss_pred             ---c--------------------CCccccC------C--------------------------ceEEcccceee-----
Q 042715           68 ---R--------------------IPSEIGK------L--------------------------KPIAASSNNFR-----   87 (212)
Q Consensus        68 ---~--------------------~~~~l~~------l--------------------------~~l~l~~n~~~-----   87 (212)
                         .                    .+..++.      .                          ..++++.|++.     
T Consensus       327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~  406 (565)
T KOG0472|consen  327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR  406 (565)
T ss_pred             HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh
Confidence               0                    0000000      0                          11223333221     


Q ss_pred             ------------------eeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCcccccE
Q 042715           88 ------------------GSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLES  147 (212)
Q Consensus        88 ------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~  147 (212)
                                        +.+|..+..++++..|++++|.+. ..|..++.+..|+.++++.|++  .|........++.
T Consensus       407 L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEt  485 (565)
T KOG0472|consen  407 LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLET  485 (565)
T ss_pred             hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHH
Confidence                              112333444667777777777666 6677777777778888887765  3344445555666


Q ss_pred             EEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715          148 LDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL  203 (212)
Q Consensus       148 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~  203 (212)
                      +-.++|++....++.+..+.+|.+||+.+|.+...+|-...+.+++++.+.|||+.
T Consensus       486 llas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            66666777755556688889999999999999988888889999999999999987

>PLN03210 Resistant to P

Probab=99.70  E-value=3.8e-16  Score=137.26  Aligned_cols=199  Identities=17%  Similarity=0.192  Sum_probs=105.8

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcc
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAAS   82 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~   82 (212)
                      .+++|++|++++|.....+|..+..+++|+.|++++|......|..+ .+++|+.|++++|.....+|....++++|++.
T Consensus       655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~  733 (1153)
T PLN03210        655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLD  733 (1153)
T ss_pred             cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecC
Confidence            34555555555544333455555555666666665543222333332 45555555555543332333333344444444


Q ss_pred             cceeeeeCCCcc------------------------------cCCCcccEEEccCCcccccCCcccccCCcccEEEccCC
Q 042715           83 SNNFRGSIPQTC------------------------------KNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSE  132 (212)
Q Consensus        83 ~n~~~~~~~~~~------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  132 (212)
                      +|.+. .+|..+                              ...++|+.|++++|.....+|..++.+++|+.|++++|
T Consensus       734 ~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        734 ETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             CCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence            44432 111110                              01124555555555444445555566666666666554


Q ss_pred             C-----------------------CCCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCC-eeecCCCCCcc
Q 042715          133 G-----------------------IFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN-LVIGPIPQGKQ  188 (212)
Q Consensus       133 ~-----------------------~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~  188 (212)
                      .                       ..........+|+.|++++|.+. .+|..+..+++|+.|++++| .+...++....
T Consensus       813 ~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~  891 (1153)
T PLN03210        813 INLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK  891 (1153)
T ss_pred             CCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccc
Confidence            3                       22111112345677777777776 67888888888899988885 44444444446


Q ss_pred             cccccccccccCCCcc
Q 042715          189 FNTFETSSFDGNPGLC  204 (212)
Q Consensus       189 ~~~l~~l~l~~n~~~~  204 (212)
                      +++++.+.+.+|+.+-
T Consensus       892 L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        892 LKHLETVDFSDCGALT  907 (1153)
T ss_pred             ccCCCeeecCCCcccc
Confidence            7778888887776543

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=2.7e-19  Score=120.62  Aligned_cols=155  Identities=23%  Similarity=0.407  Sum_probs=135.2

Q ss_pred             CCCCCCccEEEcccccceecCCccc---cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCccc
Q 042715           49 IGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK  125 (212)
Q Consensus        49 ~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  125 (212)
                      +..+..+..|.+++|.++ .+|+.+   .+|+.|++++|.+. .+|..+..+++|+.|.+..|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            446778888999999998 666654   56788999999998 78889999999999999999998 8899999999999


Q ss_pred             EEEccCCCC----CCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCC
Q 042715          126 FLNLVSEGI----FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNP  201 (212)
Q Consensus       126 ~L~l~~n~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~  201 (212)
                      .|++.+|..    .+..|..+..|+-|++++|.+. .+|..++++.+|+.|.+++|.+...+.....+.+++++++.||.
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence            999999976    4466667889999999999997 88999999999999999999998776667799999999999998


Q ss_pred             CccCCC
Q 042715          202 GLCGEP  207 (212)
Q Consensus       202 ~~~~~~  207 (212)
                      ..--+|
T Consensus       185 l~vlpp  190 (264)
T KOG0617|consen  185 LTVLPP  190 (264)
T ss_pred             eeecCh
Confidence            765544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.70  E-value=6.7e-20  Score=138.08  Aligned_cols=191  Identities=26%  Similarity=0.376  Sum_probs=132.5

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc-----------
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI-----------   73 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----------   73 (212)
                      ..+..++.++|.+. .+|+....+..++.++++.|.+. ..++.+..+..+..++.++|.+. ..|+++           
T Consensus        91 ~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~  167 (565)
T KOG0472|consen   91 EALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDL  167 (565)
T ss_pred             HHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhc
Confidence            34445555555555 55555555555555555555554 34444555555555555555554 333322           


Q ss_pred             ---------------cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--C
Q 042715           74 ---------------GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--S  136 (212)
Q Consensus        74 ---------------~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~  136 (212)
                                     ..|++++...|-+. .+|+.++.+.+|.-|++.+|++. ..| .|.+|..|.+++++.|.+.  +
T Consensus       168 ~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lp  244 (565)
T KOG0472|consen  168 EGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLP  244 (565)
T ss_pred             cccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhH
Confidence                           22344554444444 67778888888888888888888 666 5777888888888888763  3


Q ss_pred             -cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715          137 -STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL  203 (212)
Q Consensus       137 -~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~  203 (212)
                       ....+++++..||+.+|++. ..|+.+..+.+|.+||+++|.+++.++....+ +++.+.+.|||..
T Consensus       245 ae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  245 AEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             HHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence             33347888999999999998 89999999999999999999999888887787 9999999999963

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.67  E-value=1.4e-18  Score=142.37  Aligned_cols=194  Identities=26%  Similarity=0.380  Sum_probs=142.8

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeee----------------------cCCCCCCCCCCccEEEccc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTG----------------------CIPFEIGNLKNLSTLCLEH   62 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----------------------~~~~~~~~l~~L~~L~l~~   62 (212)
                      .++++++++++.+. .+|+++..+.+|+.+...+|.+..                      ..|.....+..|++|++..
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence            35566666666655 444555556556555555554321                      3445556678888888888


Q ss_pred             ccceecCCc-----------------------------cccCCceEEcccceeeeeCCCcccCCCcccEEEccCCccccc
Q 042715           63 KQLTGRIPS-----------------------------EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGR  113 (212)
Q Consensus        63 ~~~~~~~~~-----------------------------~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  113 (212)
                      |.+. ..|.                             ..+.|+.|++.+|.++....+.+.....|+.|++++|.+...
T Consensus       320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             cccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            8775 3321                             112346778888888877777777888999999999999855


Q ss_pred             CCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCC-CCCcccc
Q 042715          114 VPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI-PQGKQFN  190 (212)
Q Consensus       114 ~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~  190 (212)
                      ....+.++..|++|++++|++.  +..+..+..|+.|...+|++. .+| .+..++.|+.+|++.|.+.... +....-+
T Consensus       399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p  476 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP  476 (1081)
T ss_pred             CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence            5566788899999999999874  577788999999999999998 778 6899999999999999997543 3333338


Q ss_pred             cccccccccCCC
Q 042715          191 TFETSSFDGNPG  202 (212)
Q Consensus       191 ~l~~l~l~~n~~  202 (212)
                      +|+.|+++||++
T Consensus       477 ~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  477 NLKYLDLSGNTR  488 (1081)
T ss_pred             ccceeeccCCcc
Confidence            999999999996

>PLN03210 Resistant to P

Probab=99.64  E-value=2.3e-15  Score=132.41  Aligned_cols=194  Identities=21%  Similarity=0.255  Sum_probs=114.8

Q ss_pred             ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCceEE
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIA   80 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~   80 (212)
                      +.+|+.|++.++.+. .++..+..+++|++++++++......| .+..+++|+.|++.+|.....+|..+   .+|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            356777777777666 555556667777777776654332344 35566677777776664443455433   4456666


Q ss_pred             cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC------------------------
Q 042715           81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS------------------------  136 (212)
Q Consensus        81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~------------------------  136 (212)
                      +++|.....+|..+ .+++|+.|++++|.....+|..   ..+|+.|++++|.+..                        
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~  763 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW  763 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence            66654433444433 3455566666555333233321   1234444444443211                        


Q ss_pred             --------cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715          137 --------STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL  203 (212)
Q Consensus       137 --------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~  203 (212)
                              .....+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|....+++++.+++++|...
T Consensus       764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL  838 (1153)
T ss_pred             ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence                    1111235678888888865557788888888888888888865556666667778888888877554

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.62  E-value=1.9e-15  Score=125.81  Aligned_cols=78  Identities=22%  Similarity=0.142  Sum_probs=44.6

Q ss_pred             cccEEEccCCCCCCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCC
Q 042715          123 ELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPG  202 (212)
Q Consensus       123 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~  202 (212)
                      +|+.|++++|.+.... ....+|+.|++++|++. .+|..   ..+|+.|++++|++...+.....++.+..+++.+|++
T Consensus       383 ~L~~LdLs~N~Lt~LP-~l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        383 GLKELIVSGNRLTSLP-VLPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             ccceEEecCCcccCCC-CcccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence            3444555555443211 11234566666666665 34432   2346667777777764443445778888899999987


Q ss_pred             ccC
Q 042715          203 LCG  205 (212)
Q Consensus       203 ~~~  205 (212)
                      ...
T Consensus       458 s~~  460 (788)
T PRK15387        458 SER  460 (788)
T ss_pred             Cch
Confidence            643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.61  E-value=2.5e-15  Score=125.48  Aligned_cols=183  Identities=22%  Similarity=0.311  Sum_probs=96.8

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcccc-CCceEEccc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG-KLKPIAASS   83 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~l~l~~   83 (212)
                      ++|+.|++++|.+. .+|..+.  .+|++|++++|.++ .+|..+  ..+|+.|++++|.+. .+|..++ +|+.|++++
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~  271 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSINRIT-ELPERLPSALQSLDLFH  271 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCCccC-cCChhHhCCCCEEECcC
Confidence            35677777777777 4555443  47777777777776 344333  235777777777766 5554443 567777777


Q ss_pred             ceeeeeCCCcccCCCcccEEEccCCcccccCCcccc-------------------cCCcccEEEccCCCCCCcccCCccc
Q 042715           84 NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLA-------------------SCTELKFLNLVSEGIFSSTLGNLIV  144 (212)
Q Consensus        84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------------~~~~L~~L~l~~n~~~~~~~~~~~~  144 (212)
                      |.+. .+|..+.  .+|+.|++++|.+. .+|..+.                   -.++|+.|++++|.+....-.-.++
T Consensus       272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~s  347 (754)
T PRK15370        272 NKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPE  347 (754)
T ss_pred             CccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCc
Confidence            7666 3444332  36777777777666 3333221                   0123444444444332211111235


Q ss_pred             ccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715          145 LESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL  203 (212)
Q Consensus       145 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~  203 (212)
                      |+.|++++|++. .+|..+  .+.|++|++++|.+...++..  ...++.+++.+|...
T Consensus       348 L~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l--~~sL~~LdLs~N~L~  401 (754)
T PRK15370        348 LQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENL--PAALQIMQASRNNLV  401 (754)
T ss_pred             ccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhH--HHHHHHHhhccCCcc
Confidence            555555555554 344333  245556666666555333221  124555556555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.60  E-value=1.2e-15  Score=127.30  Aligned_cols=185  Identities=23%  Similarity=0.300  Sum_probs=110.4

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCC-------------------CCCccEEEcccccc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGN-------------------LKNLSTLCLEHKQL   65 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------l~~L~~L~l~~~~~   65 (212)
                      ++|++|++++|.+. .+|..+.  .+|+.|++++|.+. .+|..+..                   .++|+.|++++|.+
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~L  295 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSI  295 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCcc
Confidence            35666666666665 4444332  24555555555544 23322210                   12444555555544


Q ss_pred             eecCCcccc-CCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCcccCCccc
Q 042715           66 TGRIPSEIG-KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIV  144 (212)
Q Consensus        66 ~~~~~~~l~-~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  144 (212)
                      + .+|..++ +++.|++++|.+. .+|..+  .++|+.|++++|.+. .+|..+.  ++|+.|++++|.+...+-.-.+.
T Consensus       296 t-~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~  368 (754)
T PRK15370        296 R-TLPAHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETLPPT  368 (754)
T ss_pred             c-cCcccchhhHHHHHhcCCccc-cCCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhhcCC
Confidence            4 2333222 3444555555444 222222  257888888888887 4665443  68999999999875322222468


Q ss_pred             ccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc----ccccccccccccCCCc
Q 042715          145 LESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK----QFNTFETSSFDGNPGL  203 (212)
Q Consensus       145 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~l~~l~l~~n~~~  203 (212)
                      |+.|++++|++. .+|..+.  ..|+.|++++|++...+....    ..+.+..+.+.+||+.
T Consensus       369 L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        369 ITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            999999999998 5676554  368999999999975432221    3467788999999974

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.59  E-value=7.1e-17  Score=123.89  Aligned_cols=38  Identities=29%  Similarity=0.323  Sum_probs=17.3

Q ss_pred             ccccEEEccCCeeee----ecChhccCCCCccEEEeeCCeee
Q 042715          143 IVLESLDLSNNKLSG----QIPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       143 ~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      +.|++|++++|.+++    .+...+..+++|+++++++|.+.
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            445555555555431    11223333445555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.58  E-value=4.9e-17  Score=124.77  Aligned_cols=200  Identities=20%  Similarity=0.169  Sum_probs=112.7

Q ss_pred             ceeecEEEccCCccc------cccCccccccCCCceEEccCCeeeecCCCCCCCCC---CccEEEccccccee----c--
Q 042715            4 CFDIIYIKLSGNQLT------GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLK---NLSTLCLEHKQLTG----R--   68 (212)
Q Consensus         4 l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~----~--   68 (212)
                      .+++++++++++.+.      ..++..+..+++|++|+++++.+....+..+..+.   +|++|++++|.+..    .  
T Consensus        50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~  129 (319)
T cd00116          50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA  129 (319)
T ss_pred             CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence            345666666666554      12234455666777777777766533333333333   37777777776652    1  


Q ss_pred             -CCccc-cCCceEEcccceeee----eCCCcccCCCcccEEEccCCccccc----CCcccccCCcccEEEccCCCCCC--
Q 042715           69 -IPSEI-GKLKPIAASSNNFRG----SIPQTCKNEANLAMIELSSNLLEGR----VPKSLASCTELKFLNLVSEGIFS--  136 (212)
Q Consensus        69 -~~~~l-~~l~~l~l~~n~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~--  136 (212)
                       ....+ ++++++++++|.++.    .....+..+..|++|++++|.+.+.    ++..+...++|+.|++++|.+.+  
T Consensus       130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  209 (319)
T cd00116         130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG  209 (319)
T ss_pred             HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence             11233 566777777777652    1222344556677777777766531    22233444577777777776532  


Q ss_pred             -----cccCCcccccEEEccCCeeeeecChhcc-----CCCCccEEEeeCCeeec--C---CCCCcccccccccccccCC
Q 042715          137 -----STLGNLIVLESLDLSNNKLSGQIPQQFG-----ELTSLEFFDVSDNLVIG--P---IPQGKQFNTFETSSFDGNP  201 (212)
Q Consensus       137 -----~~~~~~~~L~~L~l~~n~i~~~~~~~~~-----~~~~L~~L~l~~n~~~~--~---~~~~~~~~~l~~l~l~~n~  201 (212)
                           ..+..+++|++|++++|.+.+.....+.     ..+.|++|++++|.+.+  .   ......+++++.+++++|.
T Consensus       210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence                 2344566777788877777642222221     13677788888777651  1   1111234567777777776


Q ss_pred             Cc
Q 042715          202 GL  203 (212)
Q Consensus       202 ~~  203 (212)
                      ..
T Consensus       290 l~  291 (319)
T cd00116         290 FG  291 (319)
T ss_pred             Cc
Confidence            53

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.57  E-value=6.4e-17  Score=121.79  Aligned_cols=179  Identities=22%  Similarity=0.254  Sum_probs=133.2

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccC-CeeeecCCCCCCCCCCccE----------------------
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEK-NQLTGCIPFEIGNLKNLST----------------------   57 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~----------------------   57 (212)
                      |+.+++|+.||+++|.|+..-|++|.+++.+..|-+.+ |+|+....++|.++..++.                      
T Consensus        87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l  166 (498)
T KOG4237|consen   87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL  166 (498)
T ss_pred             ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence            57789999999999999999999999999998887766 8888655555655544444                      


Q ss_pred             --EEcccccceecCCc-ccc---CCceEEcccce----------------------------------------------
Q 042715           58 --LCLEHKQLTGRIPS-EIG---KLKPIAASSNN----------------------------------------------   85 (212)
Q Consensus        58 --L~l~~~~~~~~~~~-~l~---~l~~l~l~~n~----------------------------------------------   85 (212)
                        |.+..|.+. .++. .+.   .++++.+..|.                                              
T Consensus       167 ~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~  245 (498)
T KOG4237|consen  167 SLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL  245 (498)
T ss_pred             chhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhh
Confidence              444444333 1111 121   11222221111                                              


Q ss_pred             ---------------eeeeCC-CcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCccccc
Q 042715           86 ---------------FRGSIP-QTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLE  146 (212)
Q Consensus        86 ---------------~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~  146 (212)
                                     .....| ..|.++++|+++++++|.++...+.+|.....+++|.+..|++.   ...|.++..|+
T Consensus       246 c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~  325 (498)
T KOG4237|consen  246 CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLK  325 (498)
T ss_pred             hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccce
Confidence                           000111 23567899999999999999888889999999999999999873   37788999999


Q ss_pred             EEEccCCeeeeecChhccCCCCccEEEeeCCeee
Q 042715          147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       147 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      .|+|.+|+|+...|.+|..+.+|.+|++-.|.+.
T Consensus       326 tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  326 TLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             eeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            9999999999888999999999999999999774

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.55  E-value=1.8e-14  Score=120.17  Aligned_cols=121  Identities=25%  Similarity=0.267  Sum_probs=81.3

Q ss_pred             CccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC
Q 042715           54 NLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG  133 (212)
Q Consensus        54 ~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  133 (212)
                      +|+.|++++|.+. .+|....+++.|++++|.+. .+|..   ..+|+.|++++|.+. .+|..   ...|+.|++++|.
T Consensus       343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~  413 (788)
T PRK15387        343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNR  413 (788)
T ss_pred             ccceEecCCCccC-CCCCCCcccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCc
Confidence            3444444444444 33333334444444444444 22322   246888889888888 45543   3579999999998


Q ss_pred             CCCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC
Q 042715          134 IFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ  185 (212)
Q Consensus       134 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  185 (212)
                      +...+ ....+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+.
T Consensus       414 LssIP-~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        414 LTSLP-MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CCCCC-cchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            75422 12357889999999998 7899999999999999999999876544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.48  E-value=4.6e-16  Score=127.92  Aligned_cols=194  Identities=25%  Similarity=0.247  Sum_probs=128.5

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc-------------
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS-------------   71 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------------   71 (212)
                      ++++.|..++|.+....+.  .--.+|++++++++.++ ..|+....+.+|+.++..+|++. .+|.             
T Consensus       219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~  294 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA  294 (1081)
T ss_pred             cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence            5677777777777633332  22468999999999999 56688899999999999999875 3322             


Q ss_pred             -------------cccCCceEEcccceeeeeCCCccc-------------------------CCCcccEEEccCCccccc
Q 042715           72 -------------EIGKLKPIAASSNNFRGSIPQTCK-------------------------NEANLAMIELSSNLLEGR  113 (212)
Q Consensus        72 -------------~l~~l~~l~l~~n~~~~~~~~~~~-------------------------~~~~L~~L~l~~~~~~~~  113 (212)
                                   .+..+++|++..|.+....+..+.                         ....|+.|.+.+|.+++.
T Consensus       295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~  374 (1081)
T KOG0618|consen  295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS  374 (1081)
T ss_pred             hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence                         123345566655554321110000                         123355555566655544


Q ss_pred             CCcccccCCcccEEEccCCCCC--C-cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccc
Q 042715          114 VPKSLASCTELKFLNLVSEGIF--S-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFN  190 (212)
Q Consensus       114 ~~~~~~~~~~L~~L~l~~n~~~--~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  190 (212)
                      .-..+.++..|+.|++++|++.  + ..+.++..|++|+|++|+++ .+|+.+..++.|++|...+|++...+ ...+++
T Consensus       375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~  452 (1081)
T KOG0618|consen  375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLP  452 (1081)
T ss_pred             chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcC
Confidence            4445666677777777777553  2 44556777777888888887 67777777888888888888777444 777888


Q ss_pred             cccccccccCCCcc
Q 042715          191 TFETSSFDGNPGLC  204 (212)
Q Consensus       191 ~l~~l~l~~n~~~~  204 (212)
                      +++.++++.|...-
T Consensus       453 qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  453 QLKVLDLSCNNLSE  466 (1081)
T ss_pred             cceEEecccchhhh
Confidence            88888888776543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.39  E-value=2.6e-13  Score=107.28  Aligned_cols=176  Identities=30%  Similarity=0.455  Sum_probs=126.9

Q ss_pred             ceeecEEEccCCccccccCccccccC-CCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceE
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENLE-NISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPI   79 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l   79 (212)
                      .+.++.+++.++.+. .++.....+. +|+.|++++|.+. ..+..+..+++|+.|++++|.+. .++.   ..+++.++
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            356788888888887 5655555553 8888888888887 45556778888888888888887 5554   55677888


Q ss_pred             EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC--cccCCcccccEEEccCCeeee
Q 042715           80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--STLGNLIVLESLDLSNNKLSG  157 (212)
Q Consensus        80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~L~~L~l~~n~i~~  157 (212)
                      ++++|.+. .+|........|.++.+++|... ..+..+..+.++..+.+..|+...  ..+..++.++.|++++|.+. 
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-  268 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-  268 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-
Confidence            88888877 44444444455888888888544 445567777777777777777654  66777777888888888887 


Q ss_pred             ecChhccCCCCccEEEeeCCeeecCCCCC
Q 042715          158 QIPQQFGELTSLEFFDVSDNLVIGPIPQG  186 (212)
Q Consensus       158 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  186 (212)
                      .++. ++...+++.|++++|.+...++..
T Consensus       269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         269 SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cccc-ccccCccCEEeccCccccccchhh
Confidence            4444 777888888888888776555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.38  E-value=8.5e-15  Score=115.11  Aligned_cols=172  Identities=28%  Similarity=0.411  Sum_probs=141.0

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccC--CceEEcc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGK--LKPIAAS   82 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--l~~l~l~   82 (212)
                      ......|++.|.+. .+|..+..+-.|+.+.+.+|.+. .+|.++..+..|.+++++.|.+. ..|..+..  |+.+.++
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~s  151 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVS  151 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEe
Confidence            34456778888887 77887888888888888888888 78888889999999999999887 77777664  4788888


Q ss_pred             cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecC
Q 042715           83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIP  160 (212)
Q Consensus        83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~  160 (212)
                      +|++. .+|..++....+..|+.+.|.+. ..|..++++..|+.|.+..|...  +..+. .-.|..||++.|++. .+|
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iP  227 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLP  227 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecc
Confidence            88887 67788888888999999999988 77888888899999999888774  44455 334788999999998 788


Q ss_pred             hhccCCCCccEEEeeCCeeecCC
Q 042715          161 QQFGELTSLEFFDVSDNLVIGPI  183 (212)
Q Consensus       161 ~~~~~~~~L~~L~l~~n~~~~~~  183 (212)
                      -.|..+..|++|-|++|.+.+.+
T Consensus       228 v~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             hhhhhhhhheeeeeccCCCCCCh
Confidence            88999999999999999987544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=6.4e-14  Score=106.98  Aligned_cols=202  Identities=17%  Similarity=0.139  Sum_probs=121.7

Q ss_pred             CceeecEEEccCCccccccC-ccccccCCCceEEccCCeeeec--CCCCCCCCCCccEEEccccccee----cCCccccC
Q 042715            3 LCFDIIYIKLSGNQLTGPIP-YWLENLENISTLWLEKNQLTGC--IPFEIGNLKNLSTLCLEHKQLTG----RIPSEIGK   75 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~   75 (212)
                      ++++|+.+.+.++.+..... +....|++++.||+++|-+...  .......+|+|+.|+++.|++..    ..-..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            46677888888877762221 3456788888888888765421  11223567888888888887651    11124556


Q ss_pred             CceEEcccceeeeeC-CCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEc
Q 042715           76 LKPIAASSNNFRGSI-PQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDL  150 (212)
Q Consensus        76 l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l  150 (212)
                      ++.|.++.|+++..- ......++++..|.+++|............++.|++|++++|.+..    ..++.++.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            677777777766321 1223456777777777774221222333455677788888877654    23456777777777


Q ss_pred             cCCeeeee-cChh-----ccCCCCccEEEeeCCeeecC--CCCCcccccccccccccCCCcc
Q 042715          151 SNNKLSGQ-IPQQ-----FGELTSLEFFDVSDNLVIGP--IPQGKQFNTFETSSFDGNPGLC  204 (212)
Q Consensus       151 ~~n~i~~~-~~~~-----~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~l~~l~l~~n~~~~  204 (212)
                      +.+.+.+. .|+.     -...++|++|++..|++...  +.....+++++.+.+..|+.--
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            77777632 2222     23457778888888877432  2223355566666666666543

>PLN03150 hypothetical protein; Provisional

Probab=99.29  E-value=5.2e-12  Score=104.81  Aligned_cols=109  Identities=32%  Similarity=0.589  Sum_probs=97.0

Q ss_pred             cccEEEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEee
Q 042715           99 NLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVS  175 (212)
Q Consensus        99 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~  175 (212)
                      .++.|++++|.+.+..|..++.+++|+.|++++|.+   .+..+..+++|+.|+|++|++.+.+|+.+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            378899999999989999999999999999999976   34678899999999999999999999999999999999999


Q ss_pred             CCeeecCCCCCc--ccccccccccccCCCccCCC
Q 042715          176 DNLVIGPIPQGK--QFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       176 ~n~~~~~~~~~~--~~~~l~~l~l~~n~~~~~~~  207 (212)
                      +|.+.+.+|...  ...++..+.+.+|+..|+.|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999888754  23456788999999999976

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=8.8e-14  Score=109.51  Aligned_cols=171  Identities=24%  Similarity=0.333  Sum_probs=144.9

Q ss_pred             ccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcccc---CCceEEcccceeeeeCCCcccCCCcccEE
Q 042715           27 NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMI  103 (212)
Q Consensus        27 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~---~l~~l~l~~n~~~~~~~~~~~~~~~L~~L  103 (212)
                      .+..-...|++.|++. ..|..+..+..|+.+.+..|.+. .+|..+.   .+..++++.|.++ .+|..+..++ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            4555677899999988 78888888999999999999887 6666554   4577888989887 6676776654 8899


Q ss_pred             EccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeec
Q 042715          104 ELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG  181 (212)
Q Consensus       104 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  181 (212)
                      -+++|++. ..|..++....|..|+.+.|.+.  +..++++.+|+.|.+..|++. .+|.++..++ |.+||++.|++..
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~  225 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISY  225 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceee
Confidence            99999999 88888998889999999999884  577888999999999999998 6788888665 9999999999998


Q ss_pred             CCCCCcccccccccccccCCCcc
Q 042715          182 PIPQGKQFNTFETSSFDGNPGLC  204 (212)
Q Consensus       182 ~~~~~~~~~~l~~l~l~~n~~~~  204 (212)
                      .+-.+..+.+|+++.|++||.+.
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCCC
Confidence            88778899999999999999876

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=1.4e-11  Score=97.51  Aligned_cols=190  Identities=31%  Similarity=0.406  Sum_probs=148.7

Q ss_pred             EEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCC-CccEEEcccccceec--CCccccCCceEEcccce
Q 042715            9 YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLK-NLSTLCLEHKQLTGR--IPSEIGKLKPIAASSNN   85 (212)
Q Consensus         9 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~--~~~~l~~l~~l~l~~n~   85 (212)
                      .++...+.+. ........+..++.+++.++.+. .++.....+. +|+.|++++|.+...  ....+++|+.|++++|.
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence            3566666653 22333455688999999999998 5555666664 999999999999832  23567789999999999


Q ss_pred             eeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCcccccEEEccCCeeeeecChhc
Q 042715           86 FRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQQF  163 (212)
Q Consensus        86 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  163 (212)
                      +. .++......++++.|++++|.+. .+|........|+++.+++|..  ....+..++.+..+.+++|++. ..+..+
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~  251 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESI  251 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchh
Confidence            88 44444446789999999999999 6766655666799999999953  3466778888999999999997 557778


Q ss_pred             cCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715          164 GELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC  204 (212)
Q Consensus       164 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~  204 (212)
                      ..+++++.|++++|.+..... ...+..++.+++.+|...-
T Consensus       252 ~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         252 GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ccccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence            889999999999999986655 6788899999999987653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.22  E-value=2e-11  Score=70.24  Aligned_cols=61  Identities=38%  Similarity=0.401  Sum_probs=56.1

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL   65 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   65 (212)
                      ++|++|++++|.+....++.|..+++|++|++++|.+....+++|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999966677999999999999999999988899999999999999999874

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=3.3e-12  Score=97.79  Aligned_cols=179  Identities=23%  Similarity=0.221  Sum_probs=131.3

Q ss_pred             CceeecEEEccCCcccc--ccCccccccCCCceEEccCCeeeecCCCC-CCCCCCccEEEccccccee----cCCccccC
Q 042715            3 LCFDIIYIKLSGNQLTG--PIPYWLENLENISTLWLEKNQLTGCIPFE-IGNLKNLSTLCLEHKQLTG----RIPSEIGK   75 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~----~~~~~l~~   75 (212)
                      .|++++.||++.|-+..  .+......+|+|+.|+++.|++....... -..++.|+.|.++.|.++.    .+...+++
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            58999999999987652  23334567999999999999876222211 1356889999999998872    34467899


Q ss_pred             CceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCC--cccccCCcccEEEccCCCCCC---cc------cCCccc
Q 042715           76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP--KSLASCTELKFLNLVSEGIFS---ST------LGNLIV  144 (212)
Q Consensus        76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~---~~------~~~~~~  144 (212)
                      +..|++.+|...........-+..|++|++++|.+- ..+  ...+.++.|+.|+++.+++..   ..      ...+++
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k  302 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK  302 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence            999999999522222233344568999999999886 333  456889999999999998743   11      246789


Q ss_pred             ccEEEccCCeeeeec-ChhccCCCCccEEEeeCCeeecC
Q 042715          145 LESLDLSNNKLSGQI-PQQFGELTSLEFFDVSDNLVIGP  182 (212)
Q Consensus       145 L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~~~~~  182 (212)
                      |++|+++.|+|.++- -..+..+++|+.|.+..|.+...
T Consensus       303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            999999999996321 23456678899999999988643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=6e-11  Score=82.39  Aligned_cols=103  Identities=23%  Similarity=0.315  Sum_probs=22.6

Q ss_pred             ceeecEEEccCCccccccCcccc-ccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccCCce
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLE-NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGKLKP   78 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~   78 (212)
                      +..+++|++.++.|. .+. .+. .+.+|+.|++++|.+.. . +.+..++.|+.|++++|+++ .+.    ..+++|++
T Consensus        18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            334566666666665 222 232 35566666666666652 2 23555666666666666665 221    12344444


Q ss_pred             EEcccceeeeeC-CCcccCCCcccEEEccCCccc
Q 042715           79 IAASSNNFRGSI-PQTCKNEANLAMIELSSNLLE  111 (212)
Q Consensus        79 l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~~~  111 (212)
                      |++++|.+...- -..+..+++|+.|++.+|.+.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            555444443211 112233444444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=2.6e-11  Score=84.20  Aligned_cols=104  Identities=28%  Similarity=0.341  Sum_probs=34.7

Q ss_pred             CCceEEcccceeeeeCCCccc-CCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCc--cc-CCcccccEEEc
Q 042715           75 KLKPIAASSNNFRGSIPQTCK-NEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSS--TL-GNLIVLESLDL  150 (212)
Q Consensus        75 ~l~~l~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~-~~~~~L~~L~l  150 (212)
                      ++++|++.+|.++..  ..++ .+.+++.|++++|.+. .++ .+..++.|+.|++++|.+..-  .+ ..+++|++|++
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            457777777777632  2333 4567778888888777 332 466677778888888777542  23 35677788888


Q ss_pred             cCCeeeee-cChhccCCCCccEEEeeCCeeecC
Q 042715          151 SNNKLSGQ-IPQQFGELTSLEFFDVSDNLVIGP  182 (212)
Q Consensus       151 ~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~  182 (212)
                      ++|+|.+. .-..+..+++|++|++.+|+++..
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            88777632 124456677778888888877644

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=5e-12  Score=93.01  Aligned_cols=129  Identities=28%  Similarity=0.356  Sum_probs=78.6

Q ss_pred             CCccEEEcccccceecCCc---cccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEc
Q 042715           53 KNLSTLCLEHKQLTGRIPS---EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL  129 (212)
Q Consensus        53 ~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  129 (212)
                      ..|..+++++|.|. .+..   -+++++.|++++|++.. + ..+..+.+|+.|++++|.+. ....+-..+.+++.|.+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            44555566666554 2222   23445555555555542 2 23555677777777777776 44444455667777777


Q ss_pred             cCCCCCC-cccCCcccccEEEccCCeeeee-cChhccCCCCccEEEeeCCeeecCCCC
Q 042715          130 VSEGIFS-STLGNLIVLESLDLSNNKLSGQ-IPQQFGELTSLEFFDVSDNLVIGPIPQ  185 (212)
Q Consensus       130 ~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~  185 (212)
                      +.|.+.. .-++.+-+|..||+++|+|... --..++.+|+|+++.|.+|++.+.+..
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            7776643 3345566677888888877521 123466778888888888888765544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=3.5e-12  Score=95.08  Aligned_cols=177  Identities=18%  Similarity=0.221  Sum_probs=94.1

Q ss_pred             CceeecEEEccCCccccc----cCccccccCCCceEEccCCee---eecCC-------CCCCCCCCccEEEcccccceec
Q 042715            3 LCFDIIYIKLSGNQLTGP----IPYWLENLENISTLWLEKNQL---TGCIP-------FEIGNLKNLSTLCLEHKQLTGR   68 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~---~~~~~-------~~~~~l~~L~~L~l~~~~~~~~   68 (212)
                      .+..++++++++|.+...    +...+...+.|+..++++-.-   ....|       .++..+|+|+.++++.|.+...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            356788888888887632    333445556777777766421   11222       2344566777777777777654


Q ss_pred             CCccc-------cCCceEEcccceeeee-------------CCCcccCCCcccEEEccCCccccc----CCcccccCCcc
Q 042715           69 IPSEI-------GKLKPIAASSNNFRGS-------------IPQTCKNEANLAMIELSSNLLEGR----VPKSLASCTEL  124 (212)
Q Consensus        69 ~~~~l-------~~l~~l~l~~n~~~~~-------------~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L  124 (212)
                      .++.+       ..|++|++.+|.+...             ...-....+.|+.+.+.+|.+...    ....+...+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            44332       3456777777765421             111222345666666666655421    12234444556


Q ss_pred             cEEEccCCCCCC-------cccCCcccccEEEccCCeeeee----cChhccCCCCccEEEeeCCee
Q 042715          125 KFLNLVSEGIFS-------STLGNLIVLESLDLSNNKLSGQ----IPQQFGELTSLEFFDVSDNLV  179 (212)
Q Consensus       125 ~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~  179 (212)
                      +.+++..|.+.+       ..+..+++|+.||+.+|.++..    +...+..+++|+.|++.+|.+
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence            666666665533       2234555566666655555421    223444445555555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=1.1e-11  Score=91.34  Aligned_cols=128  Identities=24%  Similarity=0.260  Sum_probs=94.4

Q ss_pred             CCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceec-CCccccCCceEEcccceeeeeCCCcccCCCcccEEEccC
Q 042715           29 ENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR-IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSS  107 (212)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~  107 (212)
                      +.|+++|+++|.|+ .+..+..-+|+++.|++++|.+... -...+++|++|++++|.++ .+..+-.++-++++|.+++
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence            56777888888877 5566677778888888888877621 1245667788888888766 3333444567889999999


Q ss_pred             CcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEccCCeeeeecCh
Q 042715          108 NLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSGQIPQ  161 (212)
Q Consensus       108 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~  161 (212)
                      |.+. .. ..++.+.+|..|++.+|++..    ..+++++.|+++.|-+|.+. .+++
T Consensus       362 N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vd  416 (490)
T KOG1259|consen  362 NKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVD  416 (490)
T ss_pred             hhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccch
Confidence            9887 33 357788889999999998743    67788999999999999887 4443

>PLN03150 hypothetical protein; Provisional

Probab=99.02  E-value=6e-10  Score=92.67  Aligned_cols=103  Identities=32%  Similarity=0.541  Sum_probs=54.9

Q ss_pred             CceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccCCceEEcccceeeeeCCCcccCCCcccEEEccC
Q 042715           31 ISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSS  107 (212)
Q Consensus        31 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~  107 (212)
                      ++.|+++++.+.+..|..+..+++|+.|++++|.+.+.+|..   +++|+.|++++|.+++.+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            445555555555555555555555555555555554444432   23345555555555555555555666666666666


Q ss_pred             CcccccCCcccccC-CcccEEEccCCC
Q 042715          108 NLLEGRVPKSLASC-TELKFLNLVSEG  133 (212)
Q Consensus       108 ~~~~~~~~~~~~~~-~~L~~L~l~~n~  133 (212)
                      |.+.+..|..++.. .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            66666666555432 234455555553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.97  E-value=9.1e-12  Score=101.11  Aligned_cols=125  Identities=24%  Similarity=0.264  Sum_probs=94.6

Q ss_pred             CceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccC
Q 042715           76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSN  152 (212)
Q Consensus        76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~  152 (212)
                      |.+.++++|.+. .....++-++.++.|++++|++++ .. ++..++.|++|++++|.+..   ....+++ |+.|.+.+
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            344555666654 344555566789999999999984 33 78899999999999997743   2233555 99999999


Q ss_pred             CeeeeecChhccCCCCccEEEeeCCeeecC--CCCCcccccccccccccCCCccCC
Q 042715          153 NKLSGQIPQQFGELTSLEFFDVSDNLVIGP--IPQGKQFNTFETSSFDGNPGLCGE  206 (212)
Q Consensus       153 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~l~~l~l~~n~~~~~~  206 (212)
                      |.++ ...+ +.++.+|+.||+++|-+.+.  +.....+..+++|+|.|||..|.+
T Consensus       242 N~l~-tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  242 NALT-TLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cHHH-hhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            9987 4443 67899999999999988753  344457888999999999998865

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=1.4e-09  Score=62.45  Aligned_cols=57  Identities=37%  Similarity=0.597  Sum_probs=31.8

Q ss_pred             cccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCee
Q 042715          123 ELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV  179 (212)
Q Consensus       123 ~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~  179 (212)
                      +|+.|++++|.+.   +..|.++++|++|++++|.+....+.+|.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3444444444331   13445555666666666666655556666666666666666643

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.89  E-value=5.5e-11  Score=88.80  Aligned_cols=179  Identities=18%  Similarity=0.221  Sum_probs=116.2

Q ss_pred             cccccCCCceEEccCCeeeecCCCC----CCCCCCccEEEcccccceecC----------------CccccCCceEEccc
Q 042715           24 WLENLENISTLWLEKNQLTGCIPFE----IGNLKNLSTLCLEHKQLTGRI----------------PSEIGKLKPIAASS   83 (212)
Q Consensus        24 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~----------------~~~l~~l~~l~l~~   83 (212)
                      .+..+++|++++|++|-+....+..    +..+..|++|.+.+|.+....                .++-++|+.+....
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            3445677888888887765333322    345677888888887665211                12223567777777


Q ss_pred             ceeeee----CCCcccCCCcccEEEccCCccccc----CCcccccCCcccEEEccCCCCCC-------cccCCcccccEE
Q 042715           84 NNFRGS----IPQTCKNEANLAMIELSSNLLEGR----VPKSLASCTELKFLNLVSEGIFS-------STLGNLIVLESL  148 (212)
Q Consensus        84 n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L  148 (212)
                      |++...    +...++..+.|..+.+..|.+...    ....+..++.|+.|++.+|.+..       ..+..+++|+.+
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            776432    223455567888888888877622    22356778889999999887643       556677788889


Q ss_pred             EccCCeeeeecChhc----c-CCCCccEEEeeCCeeecCC-----CCCcccccccccccccCCC
Q 042715          149 DLSNNKLSGQIPQQF----G-ELTSLEFFDVSDNLVIGPI-----PQGKQFNTFETSSFDGNPG  202 (212)
Q Consensus       149 ~l~~n~i~~~~~~~~----~-~~~~L~~L~l~~n~~~~~~-----~~~~~~~~l~~l~l~~n~~  202 (212)
                      ++++|.+.+....++    . ..|.|+.|.+.+|.++..-     -.....+.+++|.+.+|..
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            988888875433322    2 3588899999999876321     1112467788888888887

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.83  E-value=4e-10  Score=89.67  Aligned_cols=124  Identities=23%  Similarity=0.240  Sum_probs=65.4

Q ss_pred             eecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceEEcccc
Q 042715            6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPIAASSN   84 (212)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l~l~~n   84 (212)
                      .+..+.+..+.+. ..-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.|+... ...+..|++|++.+|
T Consensus        73 ~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   73 SLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN  150 (414)
T ss_pred             hHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccchhhccchhhheeccC
Confidence            3444444555444 222234556666666666666662 2222556666666666666665221 123445666666666


Q ss_pred             eeeeeCCCcccCCCcccEEEccCCcccccCCcc-cccCCcccEEEccCCCC
Q 042715           85 NFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS-LASCTELKFLNLVSEGI  134 (212)
Q Consensus        85 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~  134 (212)
                      .+...  ..+..+..++.+++++|.+....+ . ...+..++.+.+..|.+
T Consensus       151 ~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  151 LISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSI  198 (414)
T ss_pred             cchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCch
Confidence            66532  233345666666666666652222 1 24455566666666544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.81  E-value=5.9e-10  Score=88.66  Aligned_cols=172  Identities=24%  Similarity=0.291  Sum_probs=108.4

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceEE
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPIA   80 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l~   80 (212)
                      ..+++++.+++.+|.+. .+...+..+++|++|++++|.|+...  .+..++.|+.|++.+|.+...- ...+..++.++
T Consensus        92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLLD  168 (414)
T ss_pred             ccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCCccchhhhccc
Confidence            45788999999999988 44333678999999999999988433  4667788999999999887221 22367788889


Q ss_pred             cccceeeeeCCCc-ccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCccc--ccEEEccCCeee
Q 042715           81 ASSNNFRGSIPQT-CKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIV--LESLDLSNNKLS  156 (212)
Q Consensus        81 l~~n~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~--L~~L~l~~n~i~  156 (212)
                      +++|.+...-. . ...+.+++.+.+.+|.+.. + ..+..+..+..+.+..|.+.. ..+.....  |+.+++++|.+.
T Consensus       169 l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~-i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  169 LSYNRIVDIEN-DELSELISLEELDLGGNSIRE-I-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             CCcchhhhhhh-hhhhhccchHHHhccCCchhc-c-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc
Confidence            99988764332 1 3566778888888887662 2 223333334444555554432 22222222  556666666665


Q ss_pred             eecChhccCCCCccEEEeeCCeee
Q 042715          157 GQIPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                       ..+..+..+..+..+++.+|.+.
T Consensus       246 -~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  246 -RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             -cccccccccccccccchhhcccc
Confidence             33233445555555555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=3.4e-09  Score=78.15  Aligned_cols=59  Identities=14%  Similarity=0.143  Sum_probs=28.1

Q ss_pred             CcccEEEccCCCCCC----cccCCcccccEEEccCCeeeeec-ChhccCCCCccEEEeeCCeee
Q 042715          122 TELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSGQI-PQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       122 ~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      +++..+.+..|.+..    ..+..++.+..|+|+.++|.++. -+++.+++.+..|.+.++++.
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            444444444443311    33334444445555555554332 244555555555555555553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.4e-10  Score=85.31  Aligned_cols=171  Identities=20%  Similarity=0.198  Sum_probs=122.2

Q ss_pred             eecEEEccCCccc-cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccc-ccee----cCCccccCCceE
Q 042715            6 DIIYIKLSGNQLT-GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK-QLTG----RIPSEIGKLKPI   79 (212)
Q Consensus         6 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~----~~~~~l~~l~~l   79 (212)
                      .|+++|++...++ ..+...+..|.+|+.|.++++.+...+...++.-.+|+.++++.+ .++.    -+..+...|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4788899988776 345566788999999999999988766677788899999999887 3432    123455678899


Q ss_pred             EcccceeeeeCCC-ccc-CCCcccEEEccCCccc--cc-CCcccccCCcccEEEccCCCCCC----cccCCcccccEEEc
Q 042715           80 AASSNNFRGSIPQ-TCK-NEANLAMIELSSNLLE--GR-VPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDL  150 (212)
Q Consensus        80 ~l~~n~~~~~~~~-~~~-~~~~L~~L~l~~~~~~--~~-~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l  150 (212)
                      ++++|.+...... .+. --.++..|+++|+.-.  .. +.-....+++|.+|+++++....    ..+..++.|+++++
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            9999887643221 111 1247888999888432  11 11123578999999999987654    33457888999999


Q ss_pred             cCCeeeeecCh---hccCCCCccEEEeeCCe
Q 042715          151 SNNKLSGQIPQ---QFGELTSLEFFDVSDNL  178 (212)
Q Consensus       151 ~~n~i~~~~~~---~~~~~~~L~~L~l~~n~  178 (212)
                      +.|...  +|.   .+...|+|.+|+..++-
T Consensus       346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            988753  454   45567999999988774

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=9.2e-10  Score=81.05  Aligned_cols=177  Identities=15%  Similarity=0.139  Sum_probs=120.5

Q ss_pred             ccCCCceEEccCCeeee--cCCCCCCCCCCccEEEccccccee---cCCccccCCceEEcccceeeeeC-CCcccCCCcc
Q 042715           27 NLENISTLWLEKNQLTG--CIPFEIGNLKNLSTLCLEHKQLTG---RIPSEIGKLKPIAASSNNFRGSI-PQTCKNEANL  100 (212)
Q Consensus        27 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~~-~~~~~~~~~L  100 (212)
                      .+..++++|+.+|.|+.  .+...+.++|.|++|+++.|.+..   ..|....+++++.+.+..+.-.. ......++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            46788899999998873  233446788999999999998763   33334457788888777655432 2345567788


Q ss_pred             cEEEccCCccccc--CCcccc-cCCcccEEEccCCCCCC-----cccCCcccccEEEccCCeeeeecC-hhccCCCCccE
Q 042715          101 AMIELSSNLLEGR--VPKSLA-SCTELKFLNLVSEGIFS-----STLGNLIVLESLDLSNNKLSGQIP-QQFGELTSLEF  171 (212)
Q Consensus       101 ~~L~l~~~~~~~~--~~~~~~-~~~~L~~L~l~~n~~~~-----~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~  171 (212)
                      ++|+++.|.....  ...... .-+.+++++...|....     .-..-++++..+.+..+.+.+.-. ..+..++.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            8888888854421  111122 22467777777774421     222346788888899997764432 34456788889


Q ss_pred             EEeeCCeeec--CCCCCcccccccccccccCCCc
Q 042715          172 FDVSDNLVIG--PIPQGKQFNTFETSSFDGNPGL  203 (212)
Q Consensus       172 L~l~~n~~~~--~~~~~~~~~~l~~l~l~~n~~~  203 (212)
                      |+|+.|++.+  .+.+...|+++..+.+.+||..
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            9999999975  4566679999999999999864

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.61  E-value=1.2e-08  Score=87.40  Aligned_cols=176  Identities=21%  Similarity=0.232  Sum_probs=96.3

Q ss_pred             CceeecEEEccCCc--cccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCC---c
Q 042715            3 LCFDIIYIKLSGNQ--LTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKL---K   77 (212)
Q Consensus         3 ~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l---~   77 (212)
                      .+++|++|-+..|.  +.....+.|..++.|++||+++|.-.+..|..++.+-+||+|+++++.+. .+|.++.+|   .
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            34567777777664  33233334667778888888776655577777777777888888777776 677666543   5


Q ss_pred             eEEcccceeeeeCCCcccCCCcccEEEccCCccc--ccCCcccccCCcccEEEccCCCC-CCcccCCccccc----EEEc
Q 042715           78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE--GRVPKSLASCTELKFLNLVSEGI-FSSTLGNLIVLE----SLDL  150 (212)
Q Consensus        78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~~~L~----~L~l  150 (212)
                      +|++..+......+.....+.+|++|.+......  ...-..+..+..|+.+....... .-..+..+..|.    .+.+
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~  701 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI  701 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence            6666655544344444455677777777554322  11111122333333333222111 001122222222    2222


Q ss_pred             cCCeeeeecChhccCCCCccEEEeeCCeee
Q 042715          151 SNNKLSGQIPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       151 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      .++... ..+..+..+.+|+.|.+.++...
T Consensus       702 ~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  702 EGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             cccccc-eeecccccccCcceEEEEcCCCc
Confidence            222222 34445677888888888888775

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.47  E-value=8.7e-08  Score=82.24  Aligned_cols=82  Identities=26%  Similarity=0.317  Sum_probs=66.3

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCc
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLK   77 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~   77 (212)
                      |..++.|+.||+++|.-.+.+|+.++.+-+||+|++++..+. .+|..+..+..|.+|++..+.....++.   .+++|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            346899999999987766689999999999999999999998 7888999999999999998765433332   356677


Q ss_pred             eEEccc
Q 042715           78 PIAASS   83 (212)
Q Consensus        78 ~l~l~~   83 (212)
                      +|.+..
T Consensus       646 ~L~l~~  651 (889)
T KOG4658|consen  646 VLRLPR  651 (889)
T ss_pred             EEEeec
Confidence            766543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.37  E-value=2.1e-07  Score=49.31  Aligned_cols=38  Identities=37%  Similarity=0.628  Sum_probs=30.7

Q ss_pred             ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeec
Q 042715          143 IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG  181 (212)
Q Consensus       143 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  181 (212)
                      ++|++|++++|+|+ .+|..++.+++|+.|++++|++++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            46889999999998 667678999999999999998874

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.31  E-value=4.7e-07  Score=47.97  Aligned_cols=37  Identities=38%  Similarity=0.491  Sum_probs=24.8

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeee
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLT   42 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   42 (212)
                      ++|++|++++|++. .+|+.++.|++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35777777777777 55555777777777777777766

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.21  E-value=7.1e-08  Score=63.38  Aligned_cols=111  Identities=22%  Similarity=0.205  Sum_probs=78.0

Q ss_pred             cCCCcccEEEccCCcccccCCcccc-cCCcccEEEccCCCC--CCcccCCcccccEEEccCCeeeeecChhccCCCCccE
Q 042715           95 KNEANLAMIELSSNLLEGRVPKSLA-SCTELKFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEF  171 (212)
Q Consensus        95 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~  171 (212)
                      .....|...++++|.+. .+|+.|. ..+..+.+++.+|.+  +|..+..++.|+.++++.|.+. ..|..+..+.++..
T Consensus        50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM  127 (177)
T ss_pred             hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence            34456777888888888 4555554 445788888888876  4455778888888888888887 66777777888888


Q ss_pred             EEeeCCeeecCCCCCcccccccccccccCCCccCCC
Q 042715          172 FDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       172 L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      |+..+|++....-+...........+.++||.-+|+
T Consensus       128 Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  128 LDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             hcCCCCccccCcHHHhccccHHHHHhcCCcccccCc
Confidence            888888776444333344444555677788777665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.18  E-value=3.5e-06  Score=59.05  Aligned_cols=79  Identities=22%  Similarity=0.286  Sum_probs=37.3

Q ss_pred             cccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee--cCCCCCccccccccccccc
Q 042715          123 ELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI--GPIPQGKQFNTFETSSFDG  199 (212)
Q Consensus       123 ~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~l~~l~l~~  199 (212)
                      +...+++++|.+.. ..+..++.|..|.+.+|.|+++.|..-..+++++.|.+.+|.+.  +.+.....+++|+.|.+-+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            34444555554432 33444555555555555555444443334455555555555443  2233333445555555555


Q ss_pred             CC
Q 042715          200 NP  201 (212)
Q Consensus       200 n~  201 (212)
                      ||
T Consensus       123 Np  124 (233)
T KOG1644|consen  123 NP  124 (233)
T ss_pred             Cc
Confidence            54

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=1.7e-08  Score=82.65  Aligned_cols=122  Identities=25%  Similarity=0.223  Sum_probs=82.7

Q ss_pred             ecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEccc
Q 042715            7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAASS   83 (212)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~~   83 (212)
                      |-+.+++.|.+. .+.+++.-+++++.|++++|+++..  +.+..+++|++||+++|+++ .+|.   .-..|+-|.+.+
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence            444556666665 5666777788999999999988833  37788899999999999887 4432   122467777777


Q ss_pred             ceeeeeCCCcccCCCcccEEEccCCccccc-CCcccccCCcccEEEccCCCC
Q 042715           84 NNFRGSIPQTCKNEANLAMIELSSNLLEGR-VPKSLASCTELKFLNLVSEGI  134 (212)
Q Consensus        84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~  134 (212)
                      |-++..  ..+.++.+|+.|++++|-+.+- --..++.+..|+.|.+.+|.+
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            766532  3556677788888888765521 113455667777788887765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.16  E-value=2.5e-07  Score=67.65  Aligned_cols=176  Identities=19%  Similarity=0.222  Sum_probs=102.9

Q ss_pred             ceeecEEEccCCccccccC----ccccccCCCceEEccCCeee---ecC-------CCCCCCCCCccEEEcccccceecC
Q 042715            4 CFDIIYIKLSGNQLTGPIP----YWLENLENISTLWLEKNQLT---GCI-------PFEIGNLKNLSTLCLEHKQLTGRI   69 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~---~~~-------~~~~~~l~~L~~L~l~~~~~~~~~   69 (212)
                      +..+..+++++|.|...-.    ..+++-.+|+..+++.-...   ...       ..++..||.|+..+++.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            5677888888888774322    23444566777766654211   111       123557788888888888877666


Q ss_pred             Cccc-------cCCceEEcccceeeeeCCCc-------------ccCCCcccEEEccCCcccccCCc-----ccccCCcc
Q 042715           70 PSEI-------GKLKPIAASSNNFRGSIPQT-------------CKNEANLAMIELSSNLLEGRVPK-----SLASCTEL  124 (212)
Q Consensus        70 ~~~l-------~~l~~l~l~~n~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L  124 (212)
                      |..+       ..+.+|.+++|.+-..-..-             ...-+.|+.+.+.+|++. ..+.     .+..-..|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence            5433       35678888887654211111             112456777777777665 2222     12223467


Q ss_pred             cEEEccCCCCCCcc--------cCCcccccEEEccCCeeeee----cChhccCCCCccEEEeeCCeee
Q 042715          125 KFLNLVSEGIFSST--------LGNLIVLESLDLSNNKLSGQ----IPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       125 ~~L~l~~n~~~~~~--------~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      +.+.+..|.+.+.-        ...+.+|+.|||.+|.++-.    ...++..++.|+.|.+.+|-++
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            77777777775531        23456677777777766522    2334445566777777777554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.06  E-value=1e-05  Score=56.79  Aligned_cols=121  Identities=20%  Similarity=0.204  Sum_probs=57.2

Q ss_pred             CceEEccCCeeeecCCCCCCCCCCccEEEccccccee-cCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCc
Q 042715           31 ISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG-RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNL  109 (212)
Q Consensus        31 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~  109 (212)
                      -+++++.+.++.... .--....+...+++++|.+.. ...+.++.|.+|.+.+|+++..-|..-..+++++.|.+.+|.
T Consensus        21 e~e~~LR~lkip~ie-nlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIE-NLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccccchh-hccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            355666665554111 111122345566777776641 122445556666666666654333222334456666666665


Q ss_pred             cccc-CCcccccCCcccEEEccCCCCCC------cccCCcccccEEEccC
Q 042715          110 LEGR-VPKSLASCTELKFLNLVSEGIFS------STLGNLIVLESLDLSN  152 (212)
Q Consensus       110 ~~~~-~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~L~~L~l~~  152 (212)
                      +... .-..+..++.|+.|.+-+|.+..      ..+..+++|+.||...
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            5411 01233455555555555554432      2223444555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.94  E-value=2.3e-05  Score=61.51  Aligned_cols=15  Identities=0%  Similarity=-0.121  Sum_probs=7.4

Q ss_pred             ceeecEEEccCCccc
Q 042715            4 CFDIIYIKLSGNQLT   18 (212)
Q Consensus         4 l~~L~~L~l~~~~~~   18 (212)
                      |.+++.|+++++.+.
T Consensus        51 ~~~l~~L~Is~c~L~   65 (426)
T PRK15386         51 ARASGRLYIKDCDIE   65 (426)
T ss_pred             hcCCCEEEeCCCCCc
Confidence            344555555555444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.93  E-value=1.3e-07  Score=62.11  Aligned_cols=106  Identities=20%  Similarity=0.222  Sum_probs=67.8

Q ss_pred             eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCee
Q 042715           78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKL  155 (212)
Q Consensus        78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i  155 (212)
                      .+++++|.+....+......+.++.+++++|.++ .+|..+..++.|+.++++.|.+.  +..+..+.++..|+..+|.+
T Consensus        57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   57 KISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             EEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence            3445555544222222234457788888888888 67777888999999999998773  35555688888888888888


Q ss_pred             eeecChhccCCCCccEEEeeCCeeecCCCC
Q 042715          156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQ  185 (212)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  185 (212)
                      . .++..+-.-......++..+.+.+.-+.
T Consensus       136 ~-eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  136 A-EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             c-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            6 5554333323333445566666554444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=7.5e-08  Score=71.23  Aligned_cols=178  Identities=18%  Similarity=0.151  Sum_probs=116.5

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCe-eeec-CCCCCCCCCCccEEEcccccceecC----Cccc-c
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQ-LTGC-IPFEIGNLKNLSTLCLEHKQLTGRI----PSEI-G   74 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~----~~~l-~   74 (212)
                      +.|.+|+.|.+.++++.+.+...+++..+|+.|+++.+. ++.. ..--+..+..|..|++++|.+....    ...+ +
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise  286 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE  286 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence            457889999999999998888889999999999999874 4311 1122567899999999999775322    1122 2


Q ss_pred             CCceEEcccceee---eeCCCcccCCCcccEEEccCCcc-cccCCcccccCCcccEEEccCCCCCC----cccCCccccc
Q 042715           75 KLKPIAASSNNFR---GSIPQTCKNEANLAMIELSSNLL-EGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLE  146 (212)
Q Consensus        75 ~l~~l~l~~n~~~---~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~  146 (212)
                      ++..|+++++.-.   ..+......++++..|+++.+.. ....-..+..++-|+++.++.|..++    ..+...+.|.
T Consensus       287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~  366 (419)
T KOG2120|consen  287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLV  366 (419)
T ss_pred             hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceE
Confidence            5667777776421   11222345678999999998843 32222345677889999999986543    4456788999


Q ss_pred             EEEccCCeeeeecChhccCCCCccEEEeeCCee
Q 042715          147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV  179 (212)
Q Consensus       147 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~  179 (212)
                      +|++.++--.+..--....+++|+.-....|.+
T Consensus       367 yLdv~g~vsdt~mel~~e~~~~lkin~q~~~~i  399 (419)
T KOG2120|consen  367 YLDVFGCVSDTTMELLKEMLSHLKINCQHFNFI  399 (419)
T ss_pred             EEEeccccCchHHHHHHHhCccccccceeeeee
Confidence            999877643322222223456665433333333

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.88  E-value=0.00011  Score=57.71  Aligned_cols=135  Identities=14%  Similarity=0.226  Sum_probs=80.2

Q ss_pred             ccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcccc-CCceEEcccceeeeeCCCcccCCCcccEE
Q 042715           25 LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG-KLKPIAASSNNFRGSIPQTCKNEANLAMI  103 (212)
Q Consensus        25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~l~l~~n~~~~~~~~~~~~~~~L~~L  103 (212)
                      +..+.++++|++++|.++ ..|   .-..+|+.|.+++|.-...+|..++ +|+.|.+++|.....+|      .+|+.|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP------~sLe~L  117 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP------ESVRSL  117 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc------cccceE
Confidence            445789999999999877 445   1234699999988644446665554 68899998874222333      356777


Q ss_pred             EccCCcccccCCcccccC-CcccEEEccCCC-CCCcccC--CcccccEEEccCCeeeeecChhccCCCCccEEEeeCC
Q 042715          104 ELSSNLLEGRVPKSLASC-TELKFLNLVSEG-IFSSTLG--NLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN  177 (212)
Q Consensus       104 ~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~-~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  177 (212)
                      .+..+... .    +..+ ++|+.|.+.++. .......  -.++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       118 ~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        118 EIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             EeCCCCCc-c----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            77655433 1    2222 256666664322 1111111  1256888888877654 3443332  56778887765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.81  E-value=2.8e-06  Score=71.45  Aligned_cols=14  Identities=36%  Similarity=0.579  Sum_probs=6.8

Q ss_pred             CCCccEEEeeCCee
Q 042715          166 LTSLEFFDVSDNLV  179 (212)
Q Consensus       166 ~~~L~~L~l~~n~~  179 (212)
                      +|.|+.||.+++.+
T Consensus       249 LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  249 LPELRFLDCSGTDI  262 (699)
T ss_pred             CccccEEecCCcch
Confidence            44555555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.79  E-value=4.6e-06  Score=61.24  Aligned_cols=179  Identities=18%  Similarity=0.125  Sum_probs=97.6

Q ss_pred             cccccCCCceEEccCCeeeecCCCC----CCCCCCccEEEcccccceecCC----------------ccccCCceEEccc
Q 042715           24 WLENLENISTLWLEKNQLTGCIPFE----IGNLKNLSTLCLEHKQLTGRIP----------------SEIGKLKPIAASS   83 (212)
Q Consensus        24 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~----------------~~l~~l~~l~l~~   83 (212)
                      ++.+||+|+..+++.|.+....|..    +..-..|.+|.+.+|.+.....                ..-+.|+++....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            3455677777777776655333322    3344566677777665542211                1223456666666


Q ss_pred             ceeeeeCC----CcccCCCcccEEEccCCcccccCC-----cccccCCcccEEEccCCCCCC-------cccCCcccccE
Q 042715           84 NNFRGSIP----QTCKNEANLAMIELSSNLLEGRVP-----KSLASCTELKFLNLVSEGIFS-------STLGNLIVLES  147 (212)
Q Consensus        84 n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~  147 (212)
                      |++..-..    ..+..-.+|+++.+.+|.+...-.     ..+.++.+|+.|++++|.++.       ......+.|+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            65542111    112222467777777777662200     123456778888888886643       33445566788


Q ss_pred             EEccCCeeeeecChhc----c--CCCCccEEEeeCCeeecCCC------CC--cccccccccccccCCC
Q 042715          148 LDLSNNKLSGQIPQQF----G--ELTSLEFFDVSDNLVIGPIP------QG--KQFNTFETSSFDGNPG  202 (212)
Q Consensus       148 L~l~~n~i~~~~~~~~----~--~~~~L~~L~l~~n~~~~~~~------~~--~~~~~l~~l~l~~n~~  202 (212)
                      |.+.+|-++.....++    .  ..|+|..|..++|...+...      ..  ..++-+..+.+.||.+
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            8887777654332211    1  24777888888886543221      11  1455566666666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.74  E-value=0.00019  Score=47.46  Aligned_cols=118  Identities=20%  Similarity=0.251  Sum_probs=42.9

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEc
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAA   81 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l   81 (212)
                      .+|++|+.+.+.. .+.......|..+.+|+.+.+.++ +......+|..+++++.+.+..+                  
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~------------------   68 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN------------------   68 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST------------------
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc------------------
Confidence            3444555555543 233233344555555555555443 33333444555545555555332                  


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCC--CCCCcccCCcccc
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSE--GIFSSTLGNLIVL  145 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~L  145 (212)
                          +.......+...++++.+.+..+ +.......+..+ .++.+.+..+  .+....|.++++|
T Consensus        69 ----~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   69 ----LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSNITKIEENAFKNCTKL  128 (129)
T ss_dssp             ----T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB-SS----GGG-----
T ss_pred             ----ccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCCccEECCccccccccC
Confidence                11122234455666777766554 332334455555 6666666543  1223444555444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.66  E-value=1.6e-05  Score=67.04  Aligned_cols=146  Identities=17%  Similarity=0.190  Sum_probs=99.5

Q ss_pred             CCCceEEccCCeee-ecCC-CCCCCCCCccEEEccccccee----cCCccccCCceEEcccceeeeeCCCcccCCCcccE
Q 042715           29 ENISTLWLEKNQLT-GCIP-FEIGNLKNLSTLCLEHKQLTG----RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAM  102 (212)
Q Consensus        29 ~~L~~L~l~~~~~~-~~~~-~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~  102 (212)
                      .+|++|++++...- ...+ ..-.-+|.|+.|.+++-.+..    .....|++|..|++++.+++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            67899999885422 1111 112457999999998865531    3557889999999999988744  56778899999


Q ss_pred             EEccCCcccc-cCCcccccCCcccEEEccCCCCCC---------cccCCcccccEEEccCCeeeeecChh-ccCCCCccE
Q 042715          103 IELSSNLLEG-RVPKSLASCTELKFLNLVSEGIFS---------STLGNLIVLESLDLSNNKLSGQIPQQ-FGELTSLEF  171 (212)
Q Consensus       103 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~---------~~~~~~~~L~~L~l~~n~i~~~~~~~-~~~~~~L~~  171 (212)
                      |.+.+-.+.. ..-..+..+.+|+.||++......         ..-..+|.|+.||.+++.+...+-+. ...-++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            9887766652 122346678999999999875533         12235789999999988887544332 334566665


Q ss_pred             EEeeC
Q 042715          172 FDVSD  176 (212)
Q Consensus       172 L~l~~  176 (212)
                      +..-+
T Consensus       280 i~~~~  284 (699)
T KOG3665|consen  280 IAALD  284 (699)
T ss_pred             hhhhh
Confidence            55443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.39  E-value=0.0015  Score=43.05  Aligned_cols=121  Identities=19%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             ccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccE
Q 042715           23 YWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAM  102 (212)
Q Consensus        23 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~  102 (212)
                      ..|.++.+|+.+.+.. .+......+|..+.+|+.+.+..+ +. .                    .-...+....+++.
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~--------------------i~~~~F~~~~~l~~   62 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-S--------------------IGDNAFSNCKSLES   62 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-C--------------------E-TTTTTT-TT-EE
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-c--------------------cceeeeeccccccc
Confidence            3566777777777764 344455566777767777666553 22 1                    11234455556777


Q ss_pred             EEccCCcccccCCcccccCCcccEEEccCCC--CCCcccCCcccccEEEccCCeeeeecChhccCCCCc
Q 042715          103 IELSSNLLEGRVPKSLASCTELKFLNLVSEG--IFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSL  169 (212)
Q Consensus       103 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L  169 (212)
                      +.+.. .+.......+..+++++.+.+..+-  +....+.++ .++.+.+.. .+.......|.++++|
T Consensus        63 i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   63 ITFPN-NLKSIGDNAFSNCTNLKNIDIPSNITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEETS-TT-EE-TTTTTT-TTECEEEETTT-BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccc-cccccccccccccccccccccCccccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            77754 3332334455566777777765441  122445555 666666654 2222334455555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=6.2e-06  Score=60.75  Aligned_cols=84  Identities=20%  Similarity=0.159  Sum_probs=53.1

Q ss_pred             CCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec-ChhccCCCCccEEEe
Q 042715           97 EANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI-PQQFGELTSLEFFDV  174 (212)
Q Consensus        97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l  174 (212)
                      +.+.++|++.+|.+.+ + .....|+.|+.|.++-|++.. .++..|++|++|+|..|.|.+.. -..+..+|+|+.|-|
T Consensus        18 l~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3456677777777763 2 245567777777777777754 56667777777777777775321 123456677777777


Q ss_pred             eCCeeecC
Q 042715          175 SDNLVIGP  182 (212)
Q Consensus       175 ~~n~~~~~  182 (212)
                      ..|+=++.
T Consensus        96 ~ENPCc~~  103 (388)
T KOG2123|consen   96 DENPCCGE  103 (388)
T ss_pred             ccCCcccc
Confidence            77665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.10  E-value=0.00041  Score=50.72  Aligned_cols=86  Identities=20%  Similarity=0.210  Sum_probs=56.4

Q ss_pred             ccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC--CC---CcccCCcccccEEEccCCeeeee-cChhccCCC
Q 042715           94 CKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG--IF---SSTLGNLIVLESLDLSNNKLSGQ-IPQQFGELT  167 (212)
Q Consensus        94 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~---~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~  167 (212)
                      ......++.+++.+..++ .. ..+-.+++|+.|.++.|.  ..   ......+++|+++++++|+|... --..+..++
T Consensus        39 ~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            334556666777666665 22 245567888999998883  32   23334568899999999988631 012345567


Q ss_pred             CccEEEeeCCeeec
Q 042715          168 SLEFFDVSDNLVIG  181 (212)
Q Consensus       168 ~L~~L~l~~n~~~~  181 (212)
                      +|..|++.+|..+.
T Consensus       117 nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTN  130 (260)
T ss_pred             chhhhhcccCCccc
Confidence            78888988887765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.02  E-value=0.00023  Score=52.01  Aligned_cols=60  Identities=33%  Similarity=0.362  Sum_probs=26.9

Q ss_pred             CCCcccEEEccCC--cccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEccCCee
Q 042715           96 NEANLAMIELSSN--LLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKL  155 (212)
Q Consensus        96 ~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i  155 (212)
                      .+++|++|.++.|  .+.+.++.....+++|++++++.|++..    ..+..+.+|..|++.+|..
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence            3445555555555  3332333333334555555555555432    2223344455555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=7.4e-05  Score=55.26  Aligned_cols=97  Identities=27%  Similarity=0.336  Sum_probs=66.0

Q ss_pred             ccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEE
Q 042715           73 IGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESL  148 (212)
Q Consensus        73 l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L  148 (212)
                      +.+.+.|+.+++.++..  ..+..++.|..|.++-|+++ .. ..+..|.+|++|++..|.+..    ..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44556677777777643  34556788888888888887 33 346778888888888887744    456788888888


Q ss_pred             EccCCeeeeecC-----hhccCCCCccEEE
Q 042715          149 DLSNNKLSGQIP-----QQFGELTSLEFFD  173 (212)
Q Consensus       149 ~l~~n~i~~~~~-----~~~~~~~~L~~L~  173 (212)
                      .|..|.=.+.-+     ..+.-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888775433322     2445567777765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.38  E-value=0.0026  Score=28.02  Aligned_cols=19  Identities=58%  Similarity=0.889  Sum_probs=11.7

Q ss_pred             ccEEEccCCeeeeecChhcc
Q 042715          145 LESLDLSNNKLSGQIPQQFG  164 (212)
Q Consensus       145 L~~L~l~~n~i~~~~~~~~~  164 (212)
                      |++|++++|+++ .+|..+.
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            566777777766 5555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.33  E-value=0.002  Score=28.40  Aligned_cols=12  Identities=42%  Similarity=0.390  Sum_probs=5.8

Q ss_pred             CceEEccCCeee
Q 042715           31 ISTLWLEKNQLT   42 (212)
Q Consensus        31 L~~L~l~~~~~~   42 (212)
                      |++|++++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444555555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.43  E-value=0.0073  Score=42.78  Aligned_cols=81  Identities=20%  Similarity=0.190  Sum_probs=55.0

Q ss_pred             CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC----cccC-CcccccEEEccCC-eeeeecChhccCCCCccE
Q 042715           98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLG-NLIVLESLDLSNN-KLSGQIPQQFGELTSLEF  171 (212)
Q Consensus        98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~-~~~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~  171 (212)
                      ..++.++-+++.+..+--..+..++.++.|.+.++..+.    ..++ ..++|+.|++++| +|++..-..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            356777777776664433456677777778887776544    1122 4577888899887 677655667777888888


Q ss_pred             EEeeCCe
Q 042715          172 FDVSDNL  178 (212)
Q Consensus       172 L~l~~n~  178 (212)
                      |.+.+=+
T Consensus       181 L~l~~l~  187 (221)
T KOG3864|consen  181 LHLYDLP  187 (221)
T ss_pred             HHhcCch
Confidence            8876554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.15  E-value=0.029  Score=22.88  Aligned_cols=11  Identities=36%  Similarity=0.561  Sum_probs=3.7

Q ss_pred             ccEEEeeCCee
Q 042715          169 LEFFDVSDNLV  179 (212)
Q Consensus       169 L~~L~l~~n~~  179 (212)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.75  E-value=0.073  Score=24.23  Aligned_cols=13  Identities=46%  Similarity=0.567  Sum_probs=6.0

Q ss_pred             CCceEEccCCeee
Q 042715           30 NISTLWLEKNQLT   42 (212)
Q Consensus        30 ~L~~L~l~~~~~~   42 (212)
                      +|++|++.+|.+.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.75  E-value=0.073  Score=24.23  Aligned_cols=13  Identities=46%  Similarity=0.567  Sum_probs=6.0

Q ss_pred             CCceEEccCCeee
Q 042715           30 NISTLWLEKNQLT   42 (212)
Q Consensus        30 ~L~~L~l~~~~~~   42 (212)
                      +|++|++.+|.+.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.72  E-value=0.037  Score=24.73  Aligned_cols=15  Identities=53%  Similarity=0.727  Sum_probs=6.8

Q ss_pred             ccccEEEccCCeeee
Q 042715          143 IVLESLDLSNNKLSG  157 (212)
Q Consensus       143 ~~L~~L~l~~n~i~~  157 (212)
                      ++|++|++++|+|.+
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555543

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.12  E-value=0.0062  Score=49.49  Aligned_cols=166  Identities=19%  Similarity=0.121  Sum_probs=78.4

Q ss_pred             ceeecEEEccCCccccc--cCccccccCCCceEEccCC-eeeecC----CCCCCCCCCccEEEccccc-ceecCCc----
Q 042715            4 CFDIIYIKLSGNQLTGP--IPYWLENLENISTLWLEKN-QLTGCI----PFEIGNLKNLSTLCLEHKQ-LTGRIPS----   71 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~----   71 (212)
                      ++.|+.+.+..+.--..  .-.....+++|+.|+++++ ......    ......+++|+.++++++. ++.....    
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45666666655432211  2233456777777777762 111011    1123445777777777766 4322221    


Q ss_pred             cccCCceEEcccce-eee-eCCCcccCCCcccEEEccCCccc-c-cCCcccccCCcccEEEccCCC--------------
Q 042715           72 EIGKLKPIAASSNN-FRG-SIPQTCKNEANLAMIELSSNLLE-G-RVPKSLASCTELKFLNLVSEG--------------  133 (212)
Q Consensus        72 ~l~~l~~l~l~~n~-~~~-~~~~~~~~~~~L~~L~l~~~~~~-~-~~~~~~~~~~~L~~L~l~~n~--------------  133 (212)
                      ..++|++|.+..+. ++. .+......++.|++|+++++... + ........+++++.+.+....              
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~  346 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL  346 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence            23456666655554 222 11122334566777777766432 1 111112234444443322221              


Q ss_pred             C------CCcccCCcccccEEEccCCeeeeec-ChhccCCCCc
Q 042715          134 I------FSSTLGNLIVLESLDLSNNKLSGQI-PQQFGELTSL  169 (212)
Q Consensus       134 ~------~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L  169 (212)
                      .      .......+++++.+.+..+.+.+.. ...+.+++.+
T Consensus       347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            1      1122346677777777776644222 2344555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.92  E-value=0.0007  Score=54.90  Aligned_cols=14  Identities=29%  Similarity=0.489  Sum_probs=7.2

Q ss_pred             CCccEEEeeCCeee
Q 042715          167 TSLEFFDVSDNLVI  180 (212)
Q Consensus       167 ~~L~~L~l~~n~~~  180 (212)
                      ..++.++++.|.+.
T Consensus       262 ~~l~~l~l~~nsi~  275 (478)
T KOG4308|consen  262 ETLRVLDLSRNSIT  275 (478)
T ss_pred             hhhhhhhhhcCCcc
Confidence            34455555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.58  E-value=0.00075  Score=54.72  Aligned_cols=175  Identities=23%  Similarity=0.223  Sum_probs=108.6

Q ss_pred             ecEEEccCCccccc----cCccccccCCCceEEccCCeeeecC----CCCCCCC-CCccEEEcccccceecCC----ccc
Q 042715            7 IIYIKLSGNQLTGP----IPYWLENLENISTLWLEKNQLTGCI----PFEIGNL-KNLSTLCLEHKQLTGRIP----SEI   73 (212)
Q Consensus         7 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l-~~L~~L~l~~~~~~~~~~----~~l   73 (212)
                      +..+++.+|.+...    +...+..++.|+.|++++|.+....    ...+... ..+++|.+..|.++....    ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            56677777776633    3335566788888999998876221    1223333 457777777777763322    222


Q ss_pred             ---cCCceEEcccceeee----eCCCc----ccCCCcccEEEccCCccccc----CCcccccCCc-ccEEEccCCCCCC-
Q 042715           74 ---GKLKPIAASSNNFRG----SIPQT----CKNEANLAMIELSSNLLEGR----VPKSLASCTE-LKFLNLVSEGIFS-  136 (212)
Q Consensus        74 ---~~l~~l~l~~n~~~~----~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~n~~~~-  136 (212)
                         ..++++++..|.+..    .++..    +....++++|.+.+|.++..    ....+...+. +..+++..|..-+ 
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence               234566666666521    11222    22456788899988876621    1123344454 6668888887643 


Q ss_pred             ------cccCCc-ccccEEEccCCeeeee----cChhccCCCCccEEEeeCCeeec
Q 042715          137 ------STLGNL-IVLESLDLSNNKLSGQ----IPQQFGELTSLEFFDVSDNLVIG  181 (212)
Q Consensus       137 ------~~~~~~-~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~~  181 (212)
                            ..+..+ ..++.++++.|.|.+.    ....+..++.++.+.++.|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                  333444 5678999999998753    34556677889999999998753

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=89.18  E-value=0.18  Score=41.24  Aligned_cols=61  Identities=26%  Similarity=0.278  Sum_probs=40.1

Q ss_pred             CcccccEEEccCCeeeee--cChhccCCCCccEEEeeCC--eeec--CCCCCcccccccccccccCCC
Q 042715          141 NLIVLESLDLSNNKLSGQ--IPQQFGELTSLEFFDVSDN--LVIG--PIPQGKQFNTFETSSFDGNPG  202 (212)
Q Consensus       141 ~~~~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n--~~~~--~~~~~~~~~~l~~l~l~~n~~  202 (212)
                      +.+.+..++|++|++...  +.......|++..|+|++|  .+..  .++. .+...++++.+.|||.
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K-~k~l~Leel~l~GNPl  282 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK-LKGLPLEELVLEGNPL  282 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh-hcCCCHHHeeecCCcc
Confidence            566778888888877532  2333345688888888888  4432  2222 2556788888888884

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.00  E-value=0.0093  Score=43.38  Aligned_cols=85  Identities=18%  Similarity=0.112  Sum_probs=52.8

Q ss_pred             cccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCcccccEEEccCCeeeeecChhccCCCCcc
Q 042715           93 TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLE  170 (212)
Q Consensus        93 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~  170 (212)
                      ++......+.|+++.|.+. .....+..+..+..++++.|.+  .+..+.....++++++..|+.. ..|..+...++++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            3344456666777776655 3444555566666666666644  4555555556666666666665 5666677777777


Q ss_pred             EEEeeCCee
Q 042715          171 FFDVSDNLV  179 (212)
Q Consensus       171 ~L~l~~n~~  179 (212)
                      ++++.+|.+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            777776654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.08  E-value=0.027  Score=41.06  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=46.5

Q ss_pred             cCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCccccccccccc
Q 042715          120 SCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSF  197 (212)
Q Consensus       120 ~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l  197 (212)
                      .....+.|+++.|+..  ...|+-++.++.++++.|.+. -.|..+.....+..+++..|..+..+....+.++++.+..
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            3345555666666542  244445555666666666665 5565566666666666666666544444455666666666


Q ss_pred             ccCC
Q 042715          198 DGNP  201 (212)
Q Consensus       198 ~~n~  201 (212)
                      .++|
T Consensus       119 k~~~  122 (326)
T KOG0473|consen  119 KKTE  122 (326)
T ss_pred             ccCc
Confidence            5555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.31  E-value=0.12  Score=36.93  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=19.8

Q ss_pred             CcccEEEccCC-cccccCCcccccCCcccEEEccC
Q 042715           98 ANLAMIELSSN-LLEGRVPKSLASCTELKFLNLVS  131 (212)
Q Consensus        98 ~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~  131 (212)
                      ++|+.|++++| .|++.--..+..+++|+.|++.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            56777777766 34433333455566666666555

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.07  E-value=1.1  Score=20.49  Aligned_cols=14  Identities=43%  Similarity=0.510  Sum_probs=9.2

Q ss_pred             CCccEEEeeCCeee
Q 042715          167 TSLEFFDVSDNLVI  180 (212)
Q Consensus       167 ~~L~~L~l~~n~~~  180 (212)
                      .+|+.|++++|+|.
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45667777777664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=80.48  E-value=0.22  Score=40.52  Aligned_cols=38  Identities=29%  Similarity=0.218  Sum_probs=17.3

Q ss_pred             cccccEEEccCCe-eeee-cChhccCCCCccEEEeeCCee
Q 042715          142 LIVLESLDLSNNK-LSGQ-IPQQFGELTSLEFFDVSDNLV  179 (212)
Q Consensus       142 ~~~L~~L~l~~n~-i~~~-~~~~~~~~~~L~~L~l~~n~~  179 (212)
                      +++|+.|.+.++. +++. +......++.|++|+++++..
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4555555544443 3322 122233455555555555543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=80.19  E-value=1.1  Score=20.71  Aligned_cols=14  Identities=36%  Similarity=0.351  Sum_probs=10.6

Q ss_pred             CCccEEEeeCCeee
Q 042715          167 TSLEFFDVSDNLVI  180 (212)
Q Consensus       167 ~~L~~L~l~~n~~~  180 (212)
                      ++|++|+|++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            46788888888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-29
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-06
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-28
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-06
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-22
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-07
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		9e-07
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		9e-07
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-06

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 123/262 (46%), Gaps = 52/262 (19%)
Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +S C ++ +I LS N+LTG IP W+  LEN++ L L  N  +G IP E+G+ ++L  L L
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 61  EHKQLTGRIPSEI----GKLK--------------------------------------- 77
                 G IP+ +    GK+                                        
Sbjct: 543 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 602
Query: 78  ------PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
                 P   +S  + G    T  N  ++  +++S N+L G +PK + S   L  LNL  
Sbjct: 603 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 662
Query: 132 EGIFSST---LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQ 188
             I  S    +G+L  L  LDLS+NKL G+IPQ    LT L   D+S+N + GPIP+  Q
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 722
Query: 189 FNTFETSSFDGNPGLCGEPLPK 210
           F TF  + F  NPGLCG PLP+
Sbjct: 723 FETFPPAKFLNNPGLCGYPLPR 744

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 100 LAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSST---LGNLIVLESLDLSNNKLS 156
           L  + +S N + G V   ++ C  L+FL+ VS   FS+    LG+   L+ LD+S NKLS
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLD-VSSNNFSTGIPFLGDCSALQHLDISGNKLS 233
Query: 157 GQIPQQFGELTSLEFFDVSDNLVIGPIP 184
           G   +     T L+  ++S N  +GPIP
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIP 261

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 123/262 (46%), Gaps = 52/262 (19%)
Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +S C ++ +I LS N+LTG IP W+  LEN++ L L  N  +G IP E+G+ ++L  L L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 61  EHKQLTGRIPSEI----GKLK--------------------------------------- 77
                 G IP+ +    GK+                                        
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605
Query: 78  ------PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
                 P   +S  + G    T  N  ++  +++S N+L G +PK + S   L  LNL  
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665
Query: 132 EGIFSST---LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQ 188
             I  S    +G+L  L  LDLS+NKL G+IPQ    LT L   D+S+N + GPIP+  Q
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725
Query: 189 FNTFETSSFDGNPGLCGEPLPK 210
           F TF  + F  NPGLCG PLP+
Sbjct: 726 FETFPPAKFLNNPGLCGYPLPR 747

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 100 LAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSST---LGNLIVLESLDLSNNKLS 156
           L  + +S N + G V   ++ C  L+FL+ VS   FS+    LG+   L+ LD+S NKLS
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLD-VSSNNFSTGIPFLGDCSALQHLDISGNKLS 236
Query: 157 GQIPQQFGELTSLEFFDVSDNLVIGPIP 184
           G   +     T L+  ++S N  +GPIP
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIP 264

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 9/208 (4%)
Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
           Y+ ++   ++G IP +L  ++ + TL    N L+G +P  I +L NL  +  +  +++G 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 69  IPSEIGKLKPI----AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTEL 124
           IP   G    +      S N   G IP T  N  NLA ++LS N+LEG       S    
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 125 KFLNLVSEGIFSSTLGNLIV---LESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG 181
           + ++L    + +  LG + +   L  LDL NN++ G +PQ   +L  L   +VS N + G
Sbjct: 224 QKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 182 PIPQGKQFNTFETSSFDGNPGLCGEPLP 209
            IPQG     F+ S++  N  LCG PLP
Sbjct: 283 EIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           ++  I  S NQLT   P  L+NL  +  + +  NQ+    P  + NL NL+ L L + Q+
Sbjct: 64  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
           T   P                        KN  NL  +ELSSN +      +L+  T L+
Sbjct: 120 TDIDP-----------------------LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 126 FLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
            LN  S  +     L NL  LE LD+S+NK+S        +LT+LE    ++N +    P
Sbjct: 155 QLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 212
Query: 185 QGKQFNTFETSSFDGN 200
            G   N  +  S +GN
Sbjct: 213 LGILTN-LDELSLNGN 227

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           ++  I  S NQLT   P  L+NL  +  + +  NQ+    P  + NL NL+ L L + Q+
Sbjct: 64  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
           T   P                        KN  NL  +ELSSN +      +L+  T L+
Sbjct: 120 TDIDP-----------------------LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 126 FLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ 185
            LN  ++      L NL  LE LD+S+NK+S        +LT+LE    ++N +    P 
Sbjct: 155 QLNFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPL 212
Query: 186 GKQFNTFETSSFDGN 200
           G   N  +  S +GN
Sbjct: 213 GILTN-LDELSLNGN 226

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           ++  I  S NQLT   P  L+NL  +  + +  NQ+    P  + NL NL+ L L + Q+
Sbjct: 64  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
           T   P                        KN  NL  +ELSSN +      +L+  T L+
Sbjct: 120 TDIDP-----------------------LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 126 FLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ 185
            LN  ++      L NL  LE LD+S+NK+S        +LT+LE    ++N +    P 
Sbjct: 155 QLNFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPL 212
Query: 186 GKQFNTFETSSFDGN 200
           G   N  +  S +GN
Sbjct: 213 GILTN-LDELSLNGN 226

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 86/196 (43%), Gaps = 34/196 (17%)
Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           ++  I  S NQLT   P  L+NL  +  + +  NQ+    P  + NL NL+ L L + Q+
Sbjct: 68  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 123
Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS-LASCTEL 124
           T   P                        KN  NL  +ELSSN +      S L S  +L
Sbjct: 124 TDIDP-----------------------LKNLTNLNRLELSSNTISDISALSGLTSLQQL 160
Query: 125 KFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
            F N V++      L NL  LE LD+S+NK+S        +LT+LE    ++N +    P
Sbjct: 161 SFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 215
Query: 185 QGKQFNTFETSSFDGN 200
            G   N  +  S +GN
Sbjct: 216 LGILTN-LDELSLNGN 230

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 86/196 (43%), Gaps = 34/196 (17%)
Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           ++  I  S NQLT   P  L+NL  +  + +  NQ+    P  + NL NL+ L L + Q+
Sbjct: 69  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124
Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS-LASCTEL 124
           T   P                        KN  NL  +ELSSN +      S L S  +L
Sbjct: 125 TDIDP-----------------------LKNLTNLNRLELSSNTISDISALSGLTSLQQL 161
Query: 125 KFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
            F N V++      L NL  LE LD+S+NK+S        +LT+LE    ++N +    P
Sbjct: 162 SFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216
Query: 185 QGKQFNTFETSSFDGN 200
            G   N  +  S +GN
Sbjct: 217 LGILTN-LDELSLNGN 231

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           ++  I  S NQLT   P  L+NL  +  + +  NQ+    P  + NL NL+ L L + Q+
Sbjct: 64  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
           T   P                        KN  NL  +ELSSN +      +L+  T L+
Sbjct: 120 TDIDP-----------------------LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 126 FLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
            L+  S  +     L NL  LE LD+S+NK+S        +LT+LE    ++N +    P
Sbjct: 155 QLSFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 212
Query: 185 QGKQFNTFETSSFDGN 200
            G   N  +  S +GN
Sbjct: 213 LGILTN-LDELSLNGN 227

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           ++  I  S NQLT   P  L+NL  +  + +  NQ+    P  + NL NL+ L L + Q+
Sbjct: 64  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
           T   P                        KN  NL  +ELSSN +      +L+  T L+
Sbjct: 120 TDIDP-----------------------LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 126 FLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
            L+  S  +     L NL  LE LD+S+NK+S        +LT+LE    ++N +    P
Sbjct: 155 QLSFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 212
Query: 185 QGKQFNTFETSSFDGN 200
            G   N  +  S +GN
Sbjct: 213 LGILTN-LDELSLNGN 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (485), Expect = 2e-60
 Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 9/216 (4%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           I+    + Y+ ++   ++G IP +L  ++ + TL    N L+G +P  I +L NL  +  
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 61  EHKQLTGRIPSEIGKLKPIAA----SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPK 116
           +  +++G IP   G    +      S N   G IP T  N  NLA ++LS N+LEG    
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASV 215

Query: 117 SLASCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFD 173
              S    + ++L            +G    L  LDL NN++ G +PQ   +L  L   +
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 174 VSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLP 209
           VS N + G IPQG     F+ S++  N  LCG PLP
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  123 bits (310), Expect = 3e-34
 Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 11/183 (6%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTG--CIPFEIGNLKNLSTLCLEH-KQLTGR 68
                  G +         ++ L L    L     IP  + NL  L+ L +     L G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 69  IPSEIGK---LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
           IP  I K   L  +  +  N  G+IP        L  ++ S N L G +P S++S   L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 126 FLNLVS---EGIFSSTLGNLIVL-ESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG 181
            +        G    + G+   L  S+ +S N+L+G+IP  F  L +L F D+S N++ G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211

Query: 182 PIP 184
              
Sbjct: 212 DAS 214

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (460), Expect = 3e-53
 Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 14/220 (6%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +  C  +I++ L+ N   G IP  +       +  +  N + G     I N         
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHG 589

Query: 61  E--HKQLTGRIPSEIGK---LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP 115
                +  G    ++ +     P   +S  + G    T  N  ++  +++S N+L G +P
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

Query: 116 KSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEF 171
           K + S   L  LNL      S      +G+L  L  LDLS+NKL G+IPQ    LT L  
Sbjct: 650 KEIGSMPYLFILNL-GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708

Query: 172 FDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLPKK 211
            D+S+N + GPIP+  QF TF  + F  NPGLCG PLP+ 
Sbjct: 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  142 bits (360), Expect = 2e-39
 Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 8/193 (4%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +S C ++ ++ +S N  +  IP +L +   +  L +  N+L+G     I     L  L +
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

Query: 61  EHKQLTGRIPSEI-GKLKPIAASSNNFRGSIPQT-CKNEANLAMIELSSNLLEGRVPKSL 118
              Q  G IP      L+ ++ + N F G IP         L  ++LS N   G VP   
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 119 ASCTELKFLNLVS---EG-IFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELT-SLEFFD 173
            SC+ L+ L L S    G +   TL  +  L+ LDLS N+ SG++P+    L+ SL   D
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 174 VSDNLVIGPIPQG 186
           +S N   GPI   
Sbjct: 375 LSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  142 bits (360), Expect = 2e-39
 Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 9/193 (4%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENL-ENISTLWLEKNQLTGCIPFEIGN--LKNLST 57
           +     +  + LS N+ +G +P  L NL  ++ TL L  N  +G I   +       L  
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 58  LCLEHKQLTGRIPSEIGK---LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRV 114
           L L++   TG+IP  +     L  +  S N   G+IP +  + + L  ++L  N+LEG +
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 115 PKSLASCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEF 171
           P+ L     L+ L L      G   S L N   L  + LSNN+L+G+IP+  G L +L  
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518

Query: 172 FDVSDNLVIGPIP 184
             +S+N   G IP
Sbjct: 519 LKLSNNSFSGNIP 531

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (353), Expect = 2e-38
 Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 12/193 (6%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +     +  + L  N LTG IP  L N  N++ + L  N+LTG IP  IG L+NL+ L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 61  EHKQLTGRIPSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS 117
            +   +G IP+E+G  + +     ++N F G+IP     ++      +++N + G+    
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVY 577

Query: 118 LASCTELKFLNLVS-----EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFF 172
           + +    K  +        +GI S  L  L      ++++    G     F    S+ F 
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 173 DVSDNLVIGPIPQ 185
           D+S N++ G IP+
Sbjct: 638 DMSYNMLSGYIPK 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (352), Expect = 3e-38
 Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 11/195 (5%)

Query: 2   SLCFDIIYIKLSGNQLTGPIPYWLE-NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
                + Y+ L+ N+ TG IP +L    + ++ L L  N   G +P   G+   L +L L
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

Query: 61  EHKQLTGRIPSEIG----KLKPIAASSNNFRGSIPQT-CKNEANLAMIELSSNLLEGRVP 115
                +G +P +       LK +  S N F G +P++     A+L  ++LSSN   G + 
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

Query: 116 KSLASC--TELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLE 170
            +L       L+ L L +    G    TL N   L SL LS N LSG IP   G L+ L 
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

Query: 171 FFDVSDNLVIGPIPQ 185
              +  N++ G IPQ
Sbjct: 446 DLKLWLNMLEGEIPQ 460

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  138 bits (349), Expect = 5e-38
 Identities = 58/183 (31%), Positives = 79/183 (43%), Gaps = 24/183 (13%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           +  + L  N  TG IP  L N   + +L L  N L+G IP  +G+L  L  L L      
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL------ 449

Query: 67  GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKF 126
                            N   G IPQ       L  + L  N L G +P  L++CT L +
Sbjct: 450 ---------------WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494

Query: 127 LNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183
           ++L +    G     +G L  L  L LSNN  SG IP + G+  SL + D++ NL  G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 184 PQG 186
           P  
Sbjct: 555 PAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  132 bits (335), Expect = 4e-36
 Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 13/195 (6%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +  C  + ++ +SGN+L+G     +     +  L +  NQ  G IP     LK+L  L L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276

Query: 61  EHKQLTGRIPSEIG----KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPK 116
              + TG IP  +      L  +  S N+F G++P    + + L  + LSSN   G +P 
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 117 -SLASCTELKFLNLVS---EGIFSSTLGNLIV-LESLDLSNNKLSGQIPQQFGE--LTSL 169
            +L     LK L+L      G    +L NL   L +LDLS+N  SG I     +    +L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 170 EFFDVSDNLVIGPIP 184
           +   + +N   G IP
Sbjct: 397 QELYLQNNGFTGKIP 411

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  126 bits (320), Expect = 5e-34
 Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 9   YIKLSGNQLTGPIPYWLE---NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
            + LS N ++G              +  L +  N+++G +   +    NL  L +     
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 212

Query: 66  TGRIPS--EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTE 123
           +  IP   +   L+ +  S N   G   +       L ++ +SSN   G +P        
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270

Query: 124 LKFLNLVS---EGIFSSTL-GNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV 179
           L++L+L      G     L G    L  LDLS N   G +P  FG  + LE   +S N  
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 180 IGPIPQ 185
            G +P 
Sbjct: 331 SGELPM 336

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  117 bits (296), Expect = 7e-31
 Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 16/188 (8%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP--FEIGNLKNLSTLCLEHKQLT 66
            + LS + + G +    +   ++++L L +N L+G +     +G+   L  L +    L 
Sbjct: 81  SLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

Query: 67  GRIPSEIG----KLKPIAASSNNFRGSIP---QTCKNEANLAMIELSSNLLEGRVPKSLA 119
                  G     L+ +  S+N+  G+             L  + +S N + G V   ++
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VS 197

Query: 120 SCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSD 176
            C  L+FL++ S          LG+   L+ LD+S NKLSG   +     T L+  ++S 
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 177 NLVIGPIP 184
           N  +GPIP
Sbjct: 257 NQFVGPIP 264

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (270), Expect = 2e-27
 Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 17/193 (8%)

Query: 7   IIYIKLSGNQLT---GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
           +  I LS   L      +   L +L  + +L+L  + + G +        +L++L L   
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 64  QLTGRIPS--EIG---KLKPIAASSNNFRGSIP-QTCKNEANLAMIELSSNLLEGRVPKS 117
            L+G + +   +G    LK +  SSN               +L +++LS+N + G     
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 118 LA---SCTELKFLNLVSEGIFSST--LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFF 172
                 C ELK L + S    S    +   + LE LD+S+N  S  IP   G+ ++L+  
Sbjct: 171 WVLSDGCGELKHLAI-SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHL 228

Query: 173 DVSDNLVIGPIPQ 185
           D+S N + G   +
Sbjct: 229 DISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 10/106 (9%)

Query: 93  TCKNEANLAMIELSSNLLE---GRVPKSLASCTELKFLNLVSEGIFSST---LGNLIVLE 146
           TC  +  +  I+LSS  L      V  SL S T L+ L L S    + +         L 
Sbjct: 46  TC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL-SNSHINGSVSGFKCSASLT 103

Query: 147 SLDLSNNKLSGQIP--QQFGELTSLEFFDVSDNLVIGPIPQGKQFN 190
           SLDLS N LSG +      G  + L+F +VS N +  P        
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (251), Expect = 9e-25
 Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 21/201 (10%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLE--NISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQ 64
           I  + LS +QL+         L+  N++ L L  N L          L  L    LE+  
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 65  LTGRIPSEIGKLK------------PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG 112
           +       +  L               + S  +       + +    L  + +  N + G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 113 RVPKSLASCTELKFLNLVS-----EGIFSSTLGNLIV--LESLDLSNNKLSGQIPQQFGE 165
                      LK+L+L +       + + T  +L    L  L+L+ NK+S      F  
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 166 LTSLEFFDVSDNLVIGPIPQG 186
           L  LE  D+  N +   +   
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 46/215 (21%), Positives = 72/215 (33%), Gaps = 19/215 (8%)

Query: 9   YIKLSGNQLTGPIPYW-LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG 67
            + L  N++   +       LENI  ++L  N+           + +L  L L    L  
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 68  --RIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE--------GRV 114
               PS       L  +  S+NN         +    L +++L  N L         G  
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528

Query: 115 PKSLASCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEF 171
              L   + L  LNL S   + I      +L  L+ +DL  N L+      F    SL+ 
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 172 FDVSDNLVIGPIPQ--GKQFNTFETSSFDGNPGLC 204
            ++  NL+     +  G  F          NP  C
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 1e-20
 Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 22/199 (11%)

Query: 9   YIKLSGNQLTGPIPYWLENLENIS--TLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
            + LS N++       L+   N S   L L  NQ+    P     +  L  L L + QL 
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 67  GRIPSEIG------KLKPIAASSNNFRGSIPQTCKN--EANLAMIELSSNLLEGRVPKSL 118
             +  ++        ++ ++ S++    +   T       NL M++LS N L      S 
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 119 ASCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNN---------KLSGQIPQQFGEL 166
           A   +L++  L     + +FS +L  L  +  L+L  +          L       F  L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 167 TSLEFFDVSDNLVIGPIPQ 185
             LE  ++ DN + G    
Sbjct: 329 KCLEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 1e-20
 Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 17/192 (8%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            + L  N+L+           N++ L L  N +           KNL TL L H  L+  
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 69  IPSEIG---KLKPIAASSNNFRGSIPQTCKNEAN--LAMIELSSNLLEGRVPKSLASCTE 123
                     L+ +  S+N  +    +     AN  L  +ELSSN ++   P    +   
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 124 LKFLNL--------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGEL--TSLEFFD 173
           L  L L        ++E +          + +L LSN++LS      F  L  T+L   D
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 174 VSDNLVIGPIPQ 185
           +S N +      
Sbjct: 255 LSYNNLNVVGND 266

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 4e-20
 Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 20/189 (10%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKN---------QLTGCIPFEIGNLKNLSTLC 59
           Y  L  N +     + L  L N+  L L+++          L     F    LK L  L 
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 60  LEHKQLTGRIPSEIG---KLKPIAASSN--NFRGSIPQTCKNEAN--LAMIELSSNLLEG 112
           +E   + G   +       LK ++ S++  + R    +T  + A+  L ++ L+ N +  
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 113 RVPKSLASCTELKFLNL----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTS 168
               + +    L+ L+L    + + +       L  +  + LS NK        F  + S
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 169 LEFFDVSDN 177
           L+   +   
Sbjct: 456 LQRLMLRRV 464

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.2 bits (201), Expect = 3e-18
 Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 27/169 (15%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
            S  +LT  +P  L    NI+ L L  NQL             L++L +           
Sbjct: 11  CSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV----------- 56

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
                       N      P+ C+    L ++ L  N L     K+ A CT L  L+L+S
Sbjct: 57  ----------GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106

Query: 132 ---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
              + I ++       L +LDLS+N LS        +L +L+   +S+N
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 37/174 (21%), Positives = 55/174 (31%), Gaps = 23/174 (13%)

Query: 9   YIKLSGNQLTG--PIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
            + L    L      P   + L N++ L L  N +       +  L+ L  L L+H  L 
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 67  --------GRIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP 115
                   G     +     L  +   SN F     +  K+   L +I+L  N L     
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 116 KSLASCTELKFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQ 162
               +   LK LNL       V + +F     NL     LD+  N         
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL---TELDMRFNPFDCTCESI 628

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 82  SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS---EGIFSST 138
           S       +P       N+ ++ L+ N L      +    ++L  L++       +    
Sbjct: 12  SHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 139 LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
              L +L+ L+L +N+LS    + F   T+L    +  N +     
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 145 LESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ 185
           +  L+L++N+L       F   + L   DV  N +    P+
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.2 bits (245), Expect = 4e-24
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 11/187 (5%)

Query: 9   YIKLSGNQLT--GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           ++ LS N L+  G          ++  L L  N +   +      L+ L  L  +H  L 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 409

Query: 67  GRIPSEIG----KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRV-PKSLASC 121
                 +      L  +  S  + R +        ++L +++++ N  +    P      
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 122 TELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
             L FL+L     E +  +   +L  L+ L++S+N         +  L SL+  D S N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 179 VIGPIPQ 185
           ++    Q
Sbjct: 530 IMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.7 bits (223), Expect = 3e-21
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 9/183 (4%)

Query: 11  KLSGNQLTGPIPYWLENLENISTLWLEKNQLT--GCIPFEIGNLKNLSTLCLEHKQLTGR 68
           +L+     G   +   +L ++  L L +N L+  GC         +L  L L    +   
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

Query: 69  IPSEIG--KLKPIAASSNNFRGSIPQTC-KNEANLAMIELSSNLLEGRVPKSLASCTELK 125
             + +G  +L+ +    +N +     +   +  NL  +++S               + L+
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 126 FLNL----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG 181
            L +      E         L  L  LDLS  +L    P  F  L+SL+  ++S N    
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 182 PIP 184
              
Sbjct: 509 LDT 511

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.5 bits (220), Expect = 1e-20
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 12/196 (6%)

Query: 2   SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLE 61
           +L F    + LS N L     Y   +   +  L L + ++         +L +LSTL L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 62  HKQLTGRIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG-RVPKS 117
              +             L+ + A   N          +   L  + ++ NL++  ++P+ 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 118 LASCTELKFLNLVS---EGIFSSTLGNL----IVLESLDLSNNKLSGQIPQQFGELTSLE 170
            ++ T L+ L+L S   + I+ + L  L    ++  SLDLS N ++   P  F E+  L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203

Query: 171 FFDVSDNLVIGPIPQG 186
              + +N     + + 
Sbjct: 204 KLTLRNNFDSLNVMKT 219

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.4 bits (191), Expect = 7e-17
 Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 16/195 (8%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
            S  F   +++L   +        L++L+      L      G   F   +L +L  L L
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEFLDL 354

Query: 61  EHKQLT--GRIPSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP 115
               L+  G           +     S N     +         L  ++   + L+    
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 116 KS-LASCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQI-PQQFGELTSLE 170
            S   S   L +L++        F+     L  LE L ++ N       P  F EL +L 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 171 FFDVSDNLVIGPIPQ 185
           F D+S   +    P 
Sbjct: 474 FLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.1 bits (185), Expect = 5e-16
 Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 44/173 (25%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCI-PFEIGNLKNLSTLCLEHKQL 65
           +IY+ +S              L ++  L +  N       P     L+NL+ L L   QL
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
               P+    L                      +L ++ +S N                 
Sbjct: 483 EQLSPTAFNSLS---------------------SLQVLNMSHNNF--------------- 506

Query: 126 FLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGEL-TSLEFFDVSDN 177
                   + +     L  L+ LD S N +     Q+     +SL F +++ N
Sbjct: 507 ------FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 29/191 (15%), Positives = 51/191 (26%), Gaps = 19/191 (9%)

Query: 9   YIKLSGNQLTGPIPYWLENLENIS----TLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQ 64
           ++ LS N++       L  L  +     +L L  N +   I         L  L L +  
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNF 211

Query: 65  LTGRIPSEIGK----------LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE--- 111
            +  +     +          +     +  N         +   NL + E     L+   
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 112 GRVPKSLASCTELKFLNLVSEGI-FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLE 170
             +       T +   +LVS  I            + L+L N K       +   L  L 
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331

Query: 171 FFDVSDNLVIG 181
           F          
Sbjct: 332 FTSNKGGNAFS 342

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
           ++ LS  QL    P    +L ++  L +  N       F    L +L  L      +   
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 69  IPSEIGKLKP----IAASSNNFRGSIP 91
              E+         +  + N+F  +  
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.2 bits (232), Expect = 3e-22
 Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 24/184 (13%)

Query: 1   ISLCFDIIYIKLSGNQL-TGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLC 59
             +   I  I +  N L T P+   L+ ++ +  L    NQL G +P   G+   L++L 
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359

Query: 60  LEHKQLTGRIPSEIG----KLKPIAASSNNFRGSIPQT--CKNEANLAMIELSSNLLEGR 113
           L + Q+T  IP+       +++ ++ + N  +  IP     K+ + ++ I+ S N +   
Sbjct: 360 LAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 114 VPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFD 173
             K+                    T    I + S++LSNN++S    + F   + L   +
Sbjct: 418 DGKNFDP--------------LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 174 VSDN 177
           +  N
Sbjct: 464 LMGN 467

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 91.3 bits (227), Expect = 1e-21
 Identities = 24/192 (12%), Positives = 59/192 (30%), Gaps = 22/192 (11%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
             +      I    N +T  +   +  L  +   ++  +        E    +N      
Sbjct: 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA-- 235

Query: 61  EHKQLTGRIPSEIGKLK---PIAASSNNFRGSIPQTCKNEANLAMIELSSNLL------- 110
              Q       +   LK    +   +      +P   K    + +I ++ N         
Sbjct: 236 ---QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 111 -EGRVPKSLASCTELKFLNL----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGE 165
            + +         +++ + +    +      ++L  +  L  L+   N+L G++P  FG 
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351

Query: 166 LTSLEFFDVSDN 177
              L   +++ N
Sbjct: 352 EIKLASLNLAYN 363

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.6 bits (220), Expect = 1e-20
 Identities = 29/206 (14%), Positives = 61/206 (29%), Gaps = 31/206 (15%)

Query: 1   ISLCFDIIYIKLSGNQLTG-PIPYWLENLENISTLWLEKNQLTGC-------IPFEIGNL 52
                 +  +  + N+L   P  +  +++  +S +    N++          +       
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 53  KNLSTLCLEHKQLTGRIPSEIGKLKP---IAASSNNFRG-------SIPQTCKNEANLAM 102
            N+S++ L + Q++           P   I    N              +  KN   L  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 103 IELSSNLLEGRVPKSLA--SCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSN----- 152
           I+L  N L   +       +   L  ++L          +   N   L+   + N     
Sbjct: 493 IDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQ 550

Query: 153 -NKLSGQIPQQFGELTSLEFFDVSDN 177
            N+   + P+      SL    +  N
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSN 576

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.2 bits (219), Expect = 1e-20
 Identities = 30/213 (14%), Positives = 59/213 (27%), Gaps = 31/213 (14%)

Query: 1   ISLCFDIIYIKLSGNQLTG-------PIPYWLENLENISTLWLEKNQLTGCIPFEIGNLK 53
                 +  I  S N++         P+        N+S++ L  NQ++           
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 54  NLSTLCLEHKQLTG-------RIPSEIGKLKPIAA---SSNNFRGSIPQTCKNE-ANLAM 102
            LS++ L    LT                   + +     N                L  
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

Query: 103 IELSSNLLEGRVPKSLASCTELKFLNLVS---------EGIFSSTLGNLIVLESLDLSNN 153
           I+LS N      P    + + LK   + +            +   +     L  L + +N
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG 186
            +   + ++     ++   D+ DN  I      
Sbjct: 577 DIRK-VNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.2 bits (219), Expect = 1e-20
 Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 26/198 (13%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTG-------CIPFEIGNLK 53
                ++  I LS NQ++            +S++ L  N LT               N  
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488

Query: 54  NLSTLCLEHKQLTGRIPSEIG-----KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSN 108
            L+++ L   +LT  +  +        L  I  S N+F    P    N + L    + + 
Sbjct: 489 LLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546

Query: 109 L------LEGRVPKSLASCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQI 159
                       P+ +  C  L  L + S     +      N+     LD+ +N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISID 603

Query: 160 PQQFGELTSLEFFDVSDN 177
                       + +  +
Sbjct: 604 LSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 30/193 (15%)

Query: 24  WLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG----RIPSEIGKLKP- 78
            L +   ++ L LE    +G +P  IG L  L  L L             P  I      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 79  --IAASSNNFRGSIPQTCKNEA--NLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI 134
                   +++ +       E   +L    ++S+  +  + KS     +   +  +S  I
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 135 FS--STLGNLIVLESLDLSNNKLSGQIPQQ-------------------FGELTSLEFFD 173
                 +  L  L    + N+    +   +                   +  L  L   +
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 174 VSDNLVIGPIPQG 186
           V +   +  +P  
Sbjct: 256 VYNCPNLTKLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 5e-18
 Identities = 14/179 (7%), Positives = 41/179 (22%), Gaps = 26/179 (14%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLE--NISTLWLEKNQLTGCIPFEIGNLKNLSTL 58
           IS        +            +    +  ++    +  +     I          + +
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188

Query: 59  CLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSL 118
                 +T  +   + +L                       L    + ++          
Sbjct: 189 GQLSNNITF-VSKAVMRLT---------------------KLRQFYMGNSPFVAENICEA 226

Query: 119 ASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                 ++              NL  L  +++ N     ++P     L  ++  +V+ N
Sbjct: 227 WENENSEYAQQY--KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 24/168 (14%)

Query: 9   YIKLSGNQLTG-------PIPYWLENLENISTLWLEKNQLTGCIP-FEIGNLKNLSTLCL 60
            I L GN LT              +N   ++++ L  N+LT     F    L  L  + L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 61  EHKQLTGRIPSEIGKLK---------PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE 111
            +   +   P++                 A  N      P+      +L  +++ SN + 
Sbjct: 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 112 GRVPKSLASCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLS 156
             V + +     +  L++       I  S +   I      L  +K  
Sbjct: 580 K-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 13/120 (10%), Positives = 31/120 (25%), Gaps = 9/120 (7%)

Query: 81  ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL-------VSEG 133
              + +      +  +   +  + L      GRVP ++   TEL+ L L           
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 134 IFSSTLGNLIVLESLDLSNNKLSGQIPQQFG--ELTSLEFFDVSDNLVIGPIPQGKQFNT 191
                +   +  E                    + + L    ++ +     I +  +   
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.6 bits (217), Expect = 2e-20
 Identities = 28/223 (12%), Positives = 66/223 (29%), Gaps = 34/223 (15%)

Query: 12  LSGNQLTGPIPYWLENLE-----NISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
            S N++         +++     N ST+ L  N++             +ST+ L +  +T
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 67  -------GRIPSEIGKLKPIAA---SSNNFRGSIPQTCK--NEANLAMIELSSNLLEGRV 114
                              +       N    S+    +      L+ +++S N      
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768

Query: 115 PKSLASCTELKFLNLVS---------EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGE 165
           P    + ++LK   +              + + +     L  L + +N +   + ++   
Sbjct: 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL-- 825

Query: 166 LTSLEFFDVSDN-LVIGPIPQ--GKQFNTFETSSFDGNPGLCG 205
              L   D++DN  +   +               +D    + G
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.5 bits (214), Expect = 6e-20
 Identities = 30/195 (15%), Positives = 61/195 (31%), Gaps = 21/195 (10%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
            ++  D         +          NL++++ + L        +P  + +L  L +L +
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522

Query: 61  EHKQLTG---------RIPSEIG---KLKPIAASSNNFRGSIPQTC-KNEANLAMIELSS 107
              +            R+  +     K++      NN          +    L +++   
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 108 NLLEGRVPKSLASCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQ--Q 162
           N +     ++  +  +L  L L     E I          +E L  S+NKL   IP    
Sbjct: 583 NKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFN 639

Query: 163 FGELTSLEFFDVSDN 177
              +  +   D S N
Sbjct: 640 AKSVYVMGSVDFSYN 654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.3 bits (211), Expect = 1e-19
 Identities = 30/202 (14%), Positives = 62/202 (30%), Gaps = 27/202 (13%)

Query: 2   SLCFDIIYIKLSGNQLTG-PIPYWLENLENISTLWLEKNQLTG-----CIPFEIGNLKNL 55
           +    +  +  S N+L   P  +  +++  + ++    N++           +     N 
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 56  STLCLEHKQLTGRIPSEIGKLKPIAA---SSNNFR-------GSIPQTCKNEANLAMIEL 105
           ST+ L + ++            PI+    S+N                 KN   L  I+L
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 106 SSNLLEGRVPKSLASC--TELKFLNL-------VSEGIFSST-LGNLIVLESLDLSNNKL 155
             N L   +     +     L  +++             +S+ L    +    D   N++
Sbjct: 736 RFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794

Query: 156 SGQIPQQFGELTSLEFFDVSDN 177
             Q P       SL    +  N
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSN 816

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 3e-19
 Identities = 26/189 (13%), Positives = 55/189 (29%), Gaps = 26/189 (13%)

Query: 12  LSGNQLTGP---------IPYWLENLENISTLWLEKNQLTG-CIPFEIGNLKNLSTLCLE 61
           ++ N+             +    +    I   ++  N L        +  +  L  L   
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 62  HKQLTGRIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPK-- 116
           H ++        G   KL  +    N         C     +  +  S N L+  +P   
Sbjct: 582 HNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIF 638

Query: 117 SLASCTELKFLNL-------VSEGIFSS-TLGNLIVLESLDLSNNKLSGQIPQQFGELTS 168
           +  S   +  ++            I  S      I   ++ LS N++     + F   + 
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 169 LEFFDVSDN 177
           +    +S+N
Sbjct: 699 ISTIILSNN 707

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.2 bits (208), Expect = 4e-19
 Identities = 27/216 (12%), Positives = 60/216 (27%), Gaps = 32/216 (14%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL------ 60
           +  + L+G    G +P  +  L  +  L    +  T                        
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 61  -EHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLA--MIELSSNLLEGRVPKS 117
             +K++       +     +  + N      P    +  +L    I   +N +   + K+
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA 443

Query: 118 LASCTELKFLNL----------------------VSEGIFSSTLGNLIVLESLDLSNNKL 155
           +   T+L+ +                                +  NL  L  ++L N   
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNT 191
             Q+P    +L  L+  +++ N  I        +  
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.5 bits (183), Expect = 7e-16
 Identities = 25/183 (13%), Positives = 59/183 (32%), Gaps = 22/183 (12%)

Query: 10  IKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI 69
           I++   ++       L   + +        ++         +LK+     L + ++T  I
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITF-I 440

Query: 70  PSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKF 126
              I    KL+ I  +++ F          +AN                 S ++  +L  
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLTD 495

Query: 127 LNLVS---EGIFSSTLGNLIVLESLDLSNNKLSG---------QIPQQFGELTSLEFFDV 174
           + L +          L +L  L+SL+++ N+            ++         ++ F +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 175 SDN 177
             N
Sbjct: 556 GYN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 4e-14
 Identities = 26/203 (12%), Positives = 54/203 (26%), Gaps = 32/203 (15%)

Query: 15  NQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG 74
           +         L+N   ++ L L      G +P  IG L  L  L       T       G
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFG 367

Query: 75  KLKPIAASSNNFRGSIPQTCKNEA-----NLAMIELSSNLLE-----GRVPKSLASCTEL 124
             +     S   +  I    K         L + +L  + +        + K      + 
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 125 KFLNLVSEGIFS--STLGNLIVLESLDLSNNKLSG-------------------QIPQQF 163
             +  ++  I      +  L  L+ +  +N+  +                         +
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 164 GELTSLEFFDVSDNLVIGPIPQG 186
             L  L   ++ +   +  +P  
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDF 510

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 17/136 (12%), Positives = 45/136 (33%), Gaps = 9/136 (6%)

Query: 81  ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS---EGIFSS 137
              + +         N   +  + L+    +GRVP ++   TELK L+  +         
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 138 TLGNLIVLESLDLSNNKLSGQIPQQFGE-LTSLEFFDVSDNLV-----IGPIPQGKQFNT 191
                +  +  +   +++     + F +    L   D+  + +     + PI +  + + 
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 192 FETSSFDGNPGLCGEP 207
            +T   +    +    
Sbjct: 426 KDTQIGNLTNRITFIS 441

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 17/167 (10%), Positives = 41/167 (24%), Gaps = 33/167 (19%)

Query: 51  NLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLL 110
           N      L +   Q  G      G++  ++ +    +G +P        L ++   ++  
Sbjct: 301 NWNFNKELDMWGDQ-PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359

Query: 111 EGRVP----KSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSG--------- 157
                    + L      +  + +        L     L   DL  + ++          
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 158 -------------------QIPQQFGELTSLEFFDVSDNLVIGPIPQ 185
                               I +    LT L+    +++        
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.6 bits (215), Expect = 5e-20
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 9/177 (5%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFE-IGNLKNLSTLCLEHKQLTG 67
           ++ LS N     +      LE +  L  + + L     F    +L+ L  L + +     
Sbjct: 380 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 68  RIPSEIGKLKPIAA---SSNNFRGSIPQTC-KNEANLAMIELSSNLLEGRVPKSLASCTE 123
                   L  +     + N+F+ +       N  NL  ++LS   LE        +   
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 124 LKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           L+ LN+       + SS    L  L +LD S N++            SL FF++++N
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.9 bits (195), Expect = 2e-17
 Identities = 35/205 (17%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLT--GCIPFEIGNLKNLSTLCLEHKQLT 66
            + L+ N+ +  I +    L ++S L L +N L+  GC  +      +L  L L      
Sbjct: 332 SLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 67  GRIPSEIGKLKPIAA---SSNNFRGSIPQTC-KNEANLAMIELSSNLLEGRVPKSLASCT 122
             + +    L+ +       +  +     +   +   L  +++S    +          T
Sbjct: 390 I-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 123 ELKFLNL----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
            L  L +      +   S+   N   L  LDLS  +L       F  L  L+  ++S N 
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN- 507

Query: 179 VIGPIPQGKQFNTFETSSFDGNPGL 203
                         ++S ++    L
Sbjct: 508 ---------NLLFLDSSHYNQLYSL 523

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 20/208 (9%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGC-IPFEIGNLKNLSTLCLEHKQLTGRIP 70
               +L     + +  L  +  L +  N +  C +P    NL NL  + L +  +     
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

Query: 71  SEIGKLKPIAAS------SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPK-SLASCTE 123
           +++  L+           S N    I         L  + L  N     + K  L +   
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230

Query: 124 LKFLNLVSEGIFS---------STLGNLIVL--ESLDLSNNKLSGQIPQQFGELTSLEFF 172
           L    L+               S +  L  +  +   L+          +F  L ++   
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 173 DVSDNLVIGPIPQGKQFNTFETSSFDGN 200
            ++    I  +    +   +++ S    
Sbjct: 291 SLAGVS-IKYLEDVPKHFKWQSLSIIRC 317

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 9e-14
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 28/170 (16%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
               +L+  +P  +    +   + L  N L     +   N   L  L L           
Sbjct: 18  CMDQKLSK-VPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDL----------- 63

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
                     S         +      +L+ + L+ N ++   P S +  T L+ L  V 
Sbjct: 64  ----------SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 132 ---EGIFSSTLGNLIVLESLDLSNNKLSG-QIPQQFGELTSLEFFDVSDN 177
                + S  +G LI L+ L++++N +   ++P  F  LT+L   D+S N
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 9e-14
 Identities = 22/156 (14%), Positives = 42/156 (26%), Gaps = 8/156 (5%)

Query: 9   YIKLSGNQLTGPIPYW-LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG 67
           ++    + L     +    +LE +  L +               L +L+TL +       
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 68  RIPSEI----GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTE 123
              S +      L  +  S                 L ++ +S N L             
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 124 LKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLS 156
           L  L+      E            L   +L+NN ++
Sbjct: 523 LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 17/188 (9%)

Query: 2   SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFE-IGNLKNLSTLCL 60
                 + + +S N +        + +  +  L L  N  +  I    + NL  L    L
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 61  EHKQLTGRIPSEIGKLKPIAA-----------SSNNFRGSIPQTCKNEANLAMIELSSNL 109
              +       EI +   +             +  N            AN++ + L+   
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 110 LEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSL 169
           ++    + +    + + L+++   +      +L  L+SL L+ NK S  I  +   L SL
Sbjct: 297 IKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSL 352

Query: 170 EFFDVSDN 177
            + D+S N
Sbjct: 353 SYLDLSRN 360

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 19/188 (10%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           +    L   +P  ++    + TL L +N L   +P  I +L  L  L +        +P 
Sbjct: 111 IDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168

Query: 72  EIGKLKPIA------------ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLA 119
            +                         R S+P +  N  NL  +++ ++ L   +  ++ 
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH 226

Query: 120 SCTELKFLNLVSEGIFSS---TLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSD 176
              +L+ L+L       +     G    L+ L L +      +P     LT LE  D+  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 177 NLVIGPIP 184
            + +  +P
Sbjct: 287 CVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.6 bits (197), Expect = 5e-18
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 18/180 (10%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           L    L    P     L ++  + ++   L   +P  +     L TL L    L   +P+
Sbjct: 88  LRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA 144

Query: 72  EIG---KLKPIAASSNNFRGSIP---------QTCKNEANLAMIELSSNLLEGRVPKSLA 119
            I    +L+ ++  +      +P            +   NL  + L    +   +P S+A
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203

Query: 120 SCTELKFLNLVSEGIFS--STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           +   LK L + +  + +    + +L  LE LDL         P  FG    L+   + D 
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 18/182 (9%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGN---------LKNLSTLCLEH 62
           L+ N L   +P  + +L  +  L +        +P  + +         L NL +L LE 
Sbjct: 134 LARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 63  KQLTGRIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLA 119
             +   +P+ I     LK +   ++    ++     +   L  ++L         P    
Sbjct: 193 TGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Query: 120 SCTELKFLNLVSEGIFSS---TLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSD 176
               LK L L       +    +  L  LE LDL       ++P    +L +     V  
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 177 NL 178
           +L
Sbjct: 311 HL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 22  PYWLENLENISTLWLEKNQLTGCIPFEIGNLK--NLSTLCLEHKQLTGRIPSEIG---KL 76
            +   N  N          L       + +        L L    L  + P +      L
Sbjct: 49  AWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHL 106

Query: 77  KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL------- 129
           + +   +      +P T +  A L  + L+ N L   +P S+AS   L+ L++       
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 130 -----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                ++    S     L+ L+SL L    +   +P     L +L+   + ++
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 10/156 (6%)

Query: 21  IPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGK---LK 77
                + L N+ +L LE   +   +P  I NL+NL +L + +  L+  +   I     L+
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232

Query: 78  PIAASSNNFRGSIPQTCKNEANLAMIELSS-NLLEGRVPKSLASCTELKFLNLVSEGIFS 136
            +         + P      A L  + L   + L   +P  +   T+L+ L+L      S
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 137 S---TLGNLIVLESLDLSNNKLSGQIPQQFGELTSL 169
                +  L     + +  +  +     +     + 
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 7/134 (5%)

Query: 48  EIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSS 107
              +      L  +           + + +    +  N R        N  N  +   + 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN-RWHSAWRQANSNNPQIETRTG 65

Query: 108 NLLEGRVPKSLASCTE--LKFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQQF 163
             L+      L   T+     L L S  +  F      L  L+ + +    L  ++P   
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 164 GELTSLEFFDVSDN 177
            +   LE   ++ N
Sbjct: 124 QQFAGLETLTLARN 137

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 11/179 (6%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQLTG 67
            + LS N+         +    +  L L   +L          NL  L  L L H  L  
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 68  RIPSEIG---KLKPIAASSNNFRGSIPQ---TCKNEANLAMIELSSNLLEGRVPKSLASC 121
                      L+ +    N+F     Q   + +    L ++ LS   L      +  S 
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 122 TELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
             +  ++L            L +L  +  L+L++N +S  +P     L+     ++  N
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.6 bits (202), Expect = 3e-18
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           +  I L  +               +  L L    L+  +P  +  L  L  L L      
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVL------ 308

Query: 67  GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRV-PKSLASCTELK 125
                          S+N F      +  N  +L  + +  N     +    L +   L+
Sbjct: 309 ---------------SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 126 FLNL-----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180
            L+L      +    +  L NL  L+SL+LS N+      + F E   LE  D++   + 
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

Query: 181 GPIPQG 186
               Q 
Sbjct: 414 VKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.4 bits (199), Expect = 5e-18
 Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 11/179 (6%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            + L+   L+  +P  L  L  +  L L  N+          N  +L+ L ++       
Sbjct: 282 ELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 69  IPSEI----GKLKPIAASSNNFRGS--IPQTCKNEANLAMIELSSNLLEGRVPKSLASCT 122
           + +        L+ +  S ++   S       +N ++L  + LS N       ++   C 
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 123 ELKFLNL----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           +L+ L+L    +      S   NL +L+ L+LS++ L     Q F  L +L+  ++  N
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 13/189 (6%)

Query: 9   YIKLSGNQLT--GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
            + LS + +         L NL ++ +L L  N+              L  L L   +L 
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

Query: 67  GRIP----SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG---RVPKSLA 119
            +        +  LK +  S +    S  Q       L  + L  N       +   SL 
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

Query: 120 SCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSD 176
           +   L+ L L       I      +L ++  +DLS+N+L+    +    L  + + +++ 
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532

Query: 177 NLVIGPIPQ 185
           N +   +P 
Sbjct: 533 NHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.9 bits (195), Expect = 2e-17
 Identities = 32/189 (16%), Positives = 56/189 (29%), Gaps = 12/189 (6%)

Query: 9   YIKLSGNQLTGPIPYWLENLENIS--TLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
            +    N +       + +L+  +  +L L  N +   I     +     +L     Q  
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNL 215

Query: 67  GRIP-----SEIGKLKPIAASSNNFRGSIPQTCKN--EANLAMIELSSNLLEGRVPKSLA 119
             I      S I  L        +     P   +   E ++  I L  +        +  
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275

Query: 120 SCTELKFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
             + L+ L+L +  +    S L  L  L+ L LS NK             SL    +  N
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 178 LVIGPIPQG 186
                +  G
Sbjct: 336 TKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 26/205 (12%), Positives = 62/205 (30%), Gaps = 37/205 (18%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            + L+ N L       L   + +  L+  +  ++      + N K L +L L    ++  
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 69  IPSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIEL--SSNLLEGRVPKSLASCTE 123
              +    + +      +N       +   +      + L  + N + G +         
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAV 203

Query: 124 LKFLNLVS--------EGIFSSTLGNLIVL-----------------------ESLDLSN 152
            + LN           +G+ +ST+ +L +                        ES++L  
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 153 NKLSGQIPQQFGELTSLEFFDVSDN 177
           +         F   + L+  D++  
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTAT 288

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 28/201 (13%), Positives = 60/201 (29%), Gaps = 19/201 (9%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           L+  Q+        ++   + TL L  N L       +   K L  L      ++     
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 72  EIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
            +     L+ +   SN+              L +++  +N +     + ++S  +   L+
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 129 LVSEG----IFSSTLGNLIVLESLDLSNNKLSGQIPQ--QFGELTSLEFFDVSDNLVIGP 182
           L   G           +  V +SL+    +    I +  +   + SL      D      
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM----- 238

Query: 183 IPQGKQFNTFETSSFDGNPGL 203
                       + F+G   +
Sbjct: 239 -----DDEDISPAVFEGLCEM 254

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 34/169 (20%), Positives = 51/169 (30%), Gaps = 27/169 (15%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
                L   IP  L    +   L    N L          L NL+ L L           
Sbjct: 19  CENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL----------- 64

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
                     +          T +++  L  + L++N L      +L+    LK L  + 
Sbjct: 65  ----------TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 132 ---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                I    L N   LESL L +N +S     +      L+  D  +N
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 9   YIKLSGNQLTGPI---PYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           ++ L GN            L+ L  +  L L    L+        +LK ++ + L H +L
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 66  TGRIPSEIGKLK--PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG 112
           T      +  LK   +  +SN+    +P      +    I L  N L+ 
Sbjct: 513 TSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.7 bits (195), Expect = 1e-17
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP- 70
           ++ +++    P  + NL ++ +L L  NQ+    P    +L +L        Q+T   P 
Sbjct: 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITPV 217

Query: 71  SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLV 130
           + + +L  +   +N      P    N + L  +E+ +N +      ++   T+LK LN+ 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVG 273

Query: 131 SEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           S  I   S L NL  L SL L+NN+L  +  +  G LT+L    +S N
Sbjct: 274 SNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 2e-16
 Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 14/173 (8%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            + L+ NQ+    P  L +L ++       NQ+T   P  + N+  L++L + + ++T  
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236

Query: 69  IP-SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
            P + + +L  +   +N    S     K+   L M+ + SN +       L + ++L  L
Sbjct: 237 SPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSL 292

Query: 128 NLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
            L +          +G L  L +L LS N ++   P     L+ ++  D ++ 
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.4 bits (176), Expect = 4e-15
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 11/175 (6%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP- 70
           L  N     +   L N+  ++ L + ++++    P    NL +L +L L + Q+    P 
Sbjct: 139 LGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISPL 195

Query: 71  SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLV 130
           + +  L    A  N      P    N   L  +++ +N +       LA+ ++L +L + 
Sbjct: 196 ASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIG 251

Query: 131 SEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
           +  I   + + +L  L+ L++ +N++S         L+ L    +++N +     
Sbjct: 252 TNQISDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDM 304

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.4 bits (176), Expect = 5e-15
 Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 15/182 (8%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           I  + ++G ++       +E L N+  L L  NQ+T   P    NL  L+ L +   ++T
Sbjct: 46  ITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLYIGTNKIT 101

Query: 67  GRIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTE 123
               S +     L+ +  + +N     P    N   +  + L +N         L++ T 
Sbjct: 102 --DISALQNLTNLRELYLNEDNISDISPL--ANLTKMYSLNLGANHNLS-DLSPLSNMTG 156

Query: 124 LKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGP 182
           L +L +    +   + + NL  L SL L+ N++    P     LTSL +F    N +   
Sbjct: 157 LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214

Query: 183 IP 184
            P
Sbjct: 215 TP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 13/174 (7%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
            I   L    +T  +    E LE+I+ L +   ++   I   I  L NL  L L   Q+T
Sbjct: 24  GIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT 79

Query: 67  GRIP-SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
              P S + KL  +   +N    +     +N  NL  + L+ + +       LA+ T++ 
Sbjct: 80  DISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135

Query: 126 FLNLVSEGIFS--STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
            LNL +    S  S L N+  L  L ++ +K+    P     LT L    ++ N
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 9/155 (5%)

Query: 25  LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPIAASS 83
             +L       L+K  +T  +  E   L++++ L +  +++        +  L+ +  + 
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNG 75

Query: 84  NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNL 142
           N      P    N   L  + + +N +      +L + T L+ L L  + I   S L NL
Sbjct: 76  NQITDISPL--SNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISPLANL 131

Query: 143 IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
             + SL+L  N            +T L +  V+++
Sbjct: 132 TKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.9 bits (159), Expect = 9e-13
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 12/149 (8%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
              NQ+T   P  + N+  +++L +  N++T   P    NL  L+ L +   Q++    +
Sbjct: 206 AYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQISD--IN 259

Query: 72  EIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
            +    KLK +   SN    S      N + L  + L++N L     + +   T L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 129 LVSEGIFS-STLGNLIVLESLDLSNNKLS 156
           L    I     L +L  ++S D +N  + 
Sbjct: 318 LSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            + +  NQ++      L NL  +++L+L  NQL       IG L NL+TL L    +T  
Sbjct: 269 MLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 69  IP-SEIGKLKPIAASSNN 85
            P + + K+     ++  
Sbjct: 327 RPLASLSKMDSADFANQV 344

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 11/172 (6%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           +  ++     +       +E L N++ +    NQLT   P  + NL  L  + + + Q+ 
Sbjct: 48  VTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103

Query: 67  GRIP-SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
              P + +  L  +   +N      P   KN  NL  +ELSSN +      +L+  T L+
Sbjct: 104 DITPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISD--ISALSGLTSLQ 159

Query: 126 FLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
            L+  ++      L NL  LE LD+S+NK+S        +LT+LE    ++N
Sbjct: 160 QLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.9 bits (177), Expect = 4e-15
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 13/189 (6%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +    ++  I  S NQLT   P  L+NL  +  + +  NQ+    P  + NL NL+ L L
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119

Query: 61  EHKQLTGRIP-SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLA 119
            + Q+T   P   +  L  +  SSN              +L  +   + + +    K LA
Sbjct: 120 FNNQITDIDPLKNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFGNQVTD---LKPLA 174

Query: 120 SCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
           + T L+ L++ S  +   S L  L  LESL  +NN++S   P   G LT+L+   ++ N 
Sbjct: 175 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232

Query: 179 VIGPIPQGK 187
           +        
Sbjct: 233 LKDIGTLAS 241

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 7e-15
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 10/177 (5%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            + L+ NQ++   P  L  L  ++ L L  NQ++   P  +  L  L+ L L   QL   
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302

Query: 69  IP-SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
            P S +  L  +    NN     P    +   L  +   +N +      SLA+ T + +L
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSD--VSSLANLTNINWL 358

Query: 128 NLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183
           +     I   + L NL  +  L L++   +         ++           +I P 
Sbjct: 359 SAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 11/174 (6%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           L  NQ+T   P  L+NL N++ L L  N ++      +  L +L  L   ++    +  +
Sbjct: 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLA 174

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
            +  L+ +  SSN    S         NL  +  ++N +       L   T L  L+L  
Sbjct: 175 NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG 230

Query: 132 EGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
             +    TL +L  L  LDL+NN++S   P     LT L    +  N +    P
Sbjct: 231 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 8e-12
 Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 16/171 (9%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
                +          L       L K  +T  +     +L  ++TL  +   +      
Sbjct: 9   TQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK--SID 62

Query: 72  EIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
            +     L  I  S+N      P   KN   L  I +++N +       LA+ T L  L 
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLT 118

Query: 129 LVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
           L +  I     L NL  L  L+LS+N +S         LTSL+     + +
Sbjct: 119 LFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV 167

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 14/167 (8%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            ++L+ NQL    P  + NL+N++ L L  N ++   P  + +L  L  L   + +++  
Sbjct: 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD- 345

Query: 69  IPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
             S +     +  ++A  N      P    N   +  + L+            A+ +   
Sbjct: 346 -VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 126 -FLNLVSEGIFSSTLGNLIVLESLDLSNNKLS--GQIPQQFGELTSL 169
              N+    I  +T+ +       D++ N  S   ++   F +  ++
Sbjct: 403 TVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTI 449

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 98  ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLS 156
           A      L    +      S     ++  L     GI S   +  L  L  ++ SNN+L+
Sbjct: 24  AEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 81

Query: 157 GQIPQQFGELTSLEFFDVSDNLVIGPIPQGK 187
              P     LT L    +++N +    P   
Sbjct: 82  DITP--LKNLTKLVDILMNNNQIADITPLAN 110

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.8 bits (174), Expect = 6e-15
 Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 35/192 (18%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           LS N L   +   LE+L  + TL L  N +      E+    ++ TL   +  ++ R+  
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC 116

Query: 72  EIGK-LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG-RVPKSLASCTELKFLNL 129
             G+  K I  ++N             + +  ++L  N ++     +  AS   L+ LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 130 -------VSEGIF-----------------SSTLGNLIVLESLDLSNNKLSGQIPQQFGE 165
                  V   +                       +   +  + L NNKL   I +    
Sbjct: 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 166 LTSLEFFDVSDN 177
             +LE FD+  N
Sbjct: 236 SQNLEHFDLRGN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.1 bits (167), Expect = 7e-14
 Identities = 26/171 (15%), Positives = 61/171 (35%), Gaps = 13/171 (7%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP- 70
           ++ + L   +    ++  N+  L L  N L+     ++     L  L L    L   +  
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL 76

Query: 71  SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLV 130
             +  L+ +  ++N  +  +        ++  +  ++N +  RV  S       K + L 
Sbjct: 77  ESLSTLRTLDLNNNYVQ-ELLVG----PSIETLHAANNNIS-RVSCSR--GQGKKNIYLA 128

Query: 131 S---EGIFSSTLGNLIVLESLDLSNNKLSG-QIPQQFGELTSLEFFDVSDN 177
           +     +     G    ++ LDL  N++      +      +LE  ++  N
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 24/155 (15%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 26  ENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG---KLKPIAAS 82
           +N        +  + L   +     +  N+  L L    L+    +++    KL+ +  S
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 83  SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNL 142
           SN          ++ + L  ++L++N ++      L     ++ L+  +  I   +    
Sbjct: 67  SNVLY-ETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRG 119

Query: 143 IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
              +++ L+NNK++       G  + +++ D+  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 27/130 (20%)

Query: 49  IGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSN 108
             N        +    L   + S                           N+  ++LS N
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAW---------------------NVKELDLSGN 44

Query: 109 LLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELT 167
            L       LA  T+L+ LNL S  ++    L +L  L +LDL+NN +      +     
Sbjct: 45  PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGP 99

Query: 168 SLEFFDVSDN 177
           S+E    ++N
Sbjct: 100 SIETLHAANN 109

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 89  SIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS---EGIFSSTLGNLIVL 145
           +I +  +N     + +++ + L+  +     S   +K L+L       I ++ L     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 146 ESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQ 188
           E L+LS+N L          L++L   D+++N  +  +  G  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY-VQELLVGPS 100

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.5 bits (175), Expect = 9e-15
 Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 11  KLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP 70
               NQLT  +P     L+    L +  NQL   +P     L  L        +LT  +P
Sbjct: 167 WAYNNQLTS-LPMLPSGLQ---ELSVSDNQLA-SLPTLPSELYKLWAYNN---RLT-SLP 217

Query: 71  SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN-- 128
           +    LK +  S N    S+P        L  + +S N L   +P   +    L      
Sbjct: 218 ALPSGLKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSGLLSLSVYRNQ 272

Query: 129 LVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFD 173
           L        +L +L    +++L  N LS +  Q   E+TS   + 
Sbjct: 273 LTR---LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.4 bits (167), Expect = 1e-13
 Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           +  N LT  +P     L     L +  NQLT  +P     L  LS        L    P+
Sbjct: 68  IPDNNLTS-LPALPPELRT---LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL----PA 118

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
               L  +    N    S+P        L  + +S N L   +P   +   +L   N   
Sbjct: 119 LPSGLCKLWIFGNQLT-SLPVLP---PGLQELSVSDNQLA-SLPALPSELCKLWAYNNQL 173

Query: 132 EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFD 173
             +          L+ L +S+N+L+  +P    EL  L  ++
Sbjct: 174 TSL-PMLPSG---LQELSVSDNQLA-SLPTLPSELYKLWAYN 210

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.7 bits (160), Expect = 7e-13
 Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           +  + LT  +P       +I+TL +  N LT  +P     L+ L    +   QLT  +P 
Sbjct: 47  VGESGLTT-LP--DCLPAHITTLVIPDNNLT-SLPALPPELRTLE---VSGNQLT-SLPV 98

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
               L  ++  SN     +P        L  + +  N L   +P       EL   +   
Sbjct: 99  LPPGLLELSIFSNPLT-HLPALPS---GLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQL 153

Query: 132 EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
             +  +       L  L   NN+L+  +P     L  L    VSDN
Sbjct: 154 ASL-PALPSE---LCKLWAYNNQLT-SLPMLPSGLQEL---SVSDN 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           +SGN+LT  +P     L    +L + +NQLT  +P  + +L + +T+ LE   L+ R   
Sbjct: 248 VSGNRLTS-LPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302

Query: 72  EIGKLKPIAASSNNF-RGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL-NL 129
            + ++      S    R  +          A+   +++ L        A           
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362

Query: 130 VSEGIFSSTLGNLIVLES 147
            +   FS  L  L   E+
Sbjct: 363 DNADAFSLFLDRLSETEN 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.5 bits (168), Expect = 5e-14
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 14/172 (8%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            + +S N L        +   ++  L L  N+LT     ++  + +L    + +  L+  
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-T 200

Query: 69  IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
           +   I  ++ + AS N+    +         L +++L  N L       L +   L  ++
Sbjct: 201 LAIPI-AVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD 254

Query: 129 LVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           L     E I       +  LE L +SNN+L   +      + +L+  D+S N
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 305

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 40/171 (23%), Positives = 62/171 (36%), Gaps = 11/171 (6%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQLTG 67
            + L  N L+        N   ++TL +  N L   I  +      +L  L L   +LT 
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH 179

Query: 68  RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
              S I  L     S N        T      +  ++ S N +   V   +    EL  L
Sbjct: 180 VDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTIL 231

Query: 128 NLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
            L    +   + L N   L  +DLS N+L   +   F ++  LE   +S+N
Sbjct: 232 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 34/185 (18%), Positives = 71/185 (38%), Gaps = 13/185 (7%)

Query: 2   SLCFDIIYIKLSGNQLTGPIPYWLE--NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLC 59
           +L +D ++  +  +  T  + +  E   L N   +  + + +       + + + +  L 
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 60  LEHKQLTGRIPSEI----GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP 115
           L   Q+   I +        ++ +    N  R   P   +N   L ++ L  N L     
Sbjct: 76  LNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 116 KSLASCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFF 172
               +  +L  L++ +   E I   T      L++L LS+N+L+  +      + SL   
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHA 191

Query: 173 DVSDN 177
           +VS N
Sbjct: 192 NVSYN 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 27/156 (17%)

Query: 2   SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCL 60
            +  ++  +KL  N LT     WL N   +  + L  N+L   I +     ++ L  L +
Sbjct: 223 PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYI 279

Query: 61  EHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
            + +L   +      +                       L +++LS N L   V ++   
Sbjct: 280 SNNRLV-ALNLYGQPIP---------------------TLKVLDLSHNHLL-HVERNQPQ 316

Query: 121 CTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLS 156
              L+ L L    I +  L     L++L LS+N   
Sbjct: 317 FDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 9e-14
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 12/172 (6%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            + LS N L   +   LE+L  + TL L  N +      E+    ++ TL   +  ++ R
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 69  IPSEIGK-LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG-RVPKSLASCTELKF 126
           +    G+  K I  ++N             + +  ++L  N ++     +  AS   L+ 
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 127 LNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           LNL    I+          L++LDLS+NKL+  +  +F     + +  + +N
Sbjct: 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 4e-13
 Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 28/166 (16%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           ++ + L   +    ++  N+  L L  N L+     ++     L  L L    L      
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TL 74

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
           ++  L                       L  ++L++N +     + L     ++ L+  +
Sbjct: 75  DLESLS---------------------TLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 132 EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
             I   +       +++ L+NNK++       G  + +++ D+  N
Sbjct: 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 22/175 (12%), Positives = 44/175 (25%), Gaps = 11/175 (6%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL-TGRIP 70
           LS N+L   +    ++   ++ + L  N+L   I   +   +NL    L       G + 
Sbjct: 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 71  SEIGKLKPIAA-SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL 129
               K + +   +    +    Q  +      +    +   E            LK    
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

Query: 130 VSEGIFSSTLGNLIV-------LESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                  S    L            +D    +    I Q      +    +    
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 10/171 (5%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQL-TGCIPFEIGNLKNLSTLCLEH-KQLT 66
           +I L  N+L   I   L   +N+    L  N    G +       + + T+  +  K+LT
Sbjct: 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 67  GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG----RVPKSLASCT 122
           G+   E          +                L   E +    +G    R+     +  
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA 336

Query: 123 ELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLE 170
             + ++ + E   +             +L+     L  Q+         L+
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 89  SIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS---EGIFSSTLGNLIVL 145
           +I +  +N     + +++ + L+  +     S   +K L+L       I ++ L     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 146 ESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQ 188
           E L+LS+N L          L++L   D+++N  +  +  G  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY-VQELLVGPS 100

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.5 bits (162), Expect = 4e-13
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 14/172 (8%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            + +S N L        +   ++  L L  N+LT     ++  + +L    + +  L+  
Sbjct: 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-T 206

Query: 69  IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
           +   I  ++ + AS N+    +         L +++L  N L       L +   L  ++
Sbjct: 207 LAIPI-AVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD 260

Query: 129 LVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           L     E I       +  LE L +SNN+L   +      + +L+  D+S N
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.6 bits (144), Expect = 9e-11
 Identities = 40/171 (23%), Positives = 62/171 (36%), Gaps = 11/171 (6%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQLTG 67
            + L  N L+        N   ++TL +  N L   I  +      +L  L L   +LT 
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH 185

Query: 68  RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
              S I  L     S N        T      +  ++ S N +   V   +    EL  L
Sbjct: 186 VDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTIL 237

Query: 128 NLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
            L    +   + L N   L  +DLS N+L   +   F ++  LE   +S+N
Sbjct: 238 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 11/158 (6%)

Query: 27  NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI----GKLKPIAAS 82
            L N   +  + + +       + + + +  L L   Q+   I +        ++ +   
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 107

Query: 83  SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS---EGIFSSTL 139
            N  R   P   +N   L ++ L  N L         +  +L  L++ +   E I   T 
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167

Query: 140 GNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                L++L LS+N+L+  +      + SL   +VS N
Sbjct: 168 QATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 202

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           LS N+L   + +    ++ +  L++  N+L   +      +  L  L L H  L   +  
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER 318

Query: 72  EIGKLK 77
              +  
Sbjct: 319 NQPQFD 324

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 6e-13
 Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 11/179 (6%)

Query: 9   YIKLSGNQLT--GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           ++ LS N L+  G          ++  L L  N +   +      L+ L  L  +H  L 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 409

Query: 67  GRIPSEI----GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPK-SLASC 121
                 +      L  +  S  + R +        ++L +++++ N  +           
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 122 TELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
             L FL+L     E +  +   +L  L+ L++++N+L       F  LTSL+   +  N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 35/179 (19%)

Query: 29  ENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRG 88
            +   L L  N L     +   +   L  L L                     S    + 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL---------------------SRCEIQT 66

Query: 89  SIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS---EGIFSSTLGNLIVL 145
                 ++ ++L+ + L+ N ++     + +  + L+ L  V      + +  +G+L  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 146 ESLDLSNNKL-SGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203
           + L++++N + S ++P+ F  LT+LE  D+S N          +  +   +       +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN----------KIQSIYCTDLRVLHQM 175

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 8e-11
 Identities = 45/203 (22%), Positives = 72/203 (35%), Gaps = 15/203 (7%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           LS  ++        ++L ++STL L  N +          L +L  L      L      
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 72  EIG---KLKPIAASSNNFR-GSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKF- 126
            IG    LK +  + N  +   +P+   N  NL  ++LSSN ++      L    ++   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 127 ---LNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQQ-FGELTSLEFFDVSDNLVI 180
              L+L    +          I L  L L NN  S  + +     L  LE       LV+
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV----HRLVL 234

Query: 181 GPIPQGKQFNTFETSSFDGNPGL 203
           G          F+ S+ +G   L
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNL 257

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 35/174 (20%), Positives = 52/174 (29%), Gaps = 13/174 (7%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTG---CIPFEIGNLKNLSTLCLEHKQLTGR 68
            +   L       LE L N++        L      I      L N+S+  L    +   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 69  IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
                          N   G  P       +L  +  +SN        S      L+FL+
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLD 353

Query: 129 L-----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           L       +G  S +      L+ LDLS N +   +   F  L  LE  D   +
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 406

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 9e-13
 Identities = 39/179 (21%), Positives = 61/179 (34%), Gaps = 16/179 (8%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
           YI L  N +        + LE + TL L  N LT      I  + ++  + L   +L   
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-T 395

Query: 69  IPSEIGKLKPIAASSNNFRG-SIPQTCKNEANLAMIELSSNLLEGRVPKSLAS-CTELKF 126
           +P        I  S N      I        +L ++ L+ N           S    L+ 
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 127 LNL--------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           L L            +       L  L+ L L++N L+   P  F  LT+L    ++ N
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 37/172 (21%), Positives = 56/172 (32%), Gaps = 30/172 (17%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
                LT  +P   + L     L L  N +          L+ L  L L  +     I  
Sbjct: 11  YRFCNLTQ-VP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID- 65

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLV- 130
                               +  +N  NL +++L S+ +    P +      L  L L  
Sbjct: 66  -------------------KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 131 ----SEGIFSSTLGNLIVLESLDLSNNKLSG-QIPQQFGELTSLEFFDVSDN 177
                  +      NL  L  LDLS N++    +   FG+L SL+  D S N
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 6e-11
 Identities = 41/211 (19%), Positives = 64/211 (30%), Gaps = 21/211 (9%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQ 64
               + LS N +          LE +  L L        I  E   NL NL  L L   +
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 65  LTGRIPSEI----GKLKPIAASSNNFRGSI--PQTCKNEANLAMIELSSNLLEG-RVPKS 117
           +   +  +       L  +         ++      +N   L  ++LS N +    +  S
Sbjct: 85  IY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 118 LASCTELKFLNLVS---EGIFSSTLGNL--IVLESLDLSNNKLSGQIPQQFGEL------ 166
                 LK ++  S     +    L  L    L    L+ N L  ++   +G+       
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

Query: 167 TSLEFFDVSDNLVIGPIPQGKQFNTFETSSF 197
             LE  DVS N        G   N    S  
Sbjct: 204 MVLEILDVSGNG-WTVDITGNFSNAISKSQA 233

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 27/177 (15%), Positives = 56/177 (31%), Gaps = 22/177 (12%)

Query: 5   FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQ 64
           + +       N ++    + L    +I       + +      +      L+   + H  
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD---PDQNTFAGLARSSVRHLD 272

Query: 65  LTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTEL 124
           L                S         +  +   +L ++ L+ N +     ++      L
Sbjct: 273 L----------------SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316

Query: 125 KFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
           + LNL       ++SS    L  +  +DL  N ++    Q F  L  L+  D+ DN 
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 36/200 (18%), Positives = 64/200 (32%), Gaps = 31/200 (15%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCI--PFEIGNLKNLSTLCLEHKQLT 66
            + L  +++    P   + L ++  L L    L+  +       NLK L+ L L   Q+ 
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 67  ----GRIPSEIGKLKPIAASSNNFRGSIPQTCKN--EANLAMIELSSNLLEGRVPKSLAS 120
                    ++  LK I  SSN          +      L+   L++N L  RV      
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 121 CTE------LKFLNL-------VSEGIFSSTLGNLIV--------LESLDLSNNKLSGQI 159
           C        L+ L++          G FS+ +             +       + +    
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 160 PQQFGEL--TSLEFFDVSDN 177
              F  L  +S+   D+S  
Sbjct: 257 QNTFAGLARSSVRHLDLSHG 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.4 bits (159), Expect = 1e-12
 Identities = 37/203 (18%), Positives = 75/203 (36%), Gaps = 40/203 (19%)

Query: 2   SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLE 61
           +L   I  ++++ N L   +P    +LE    L    N+L+  +P    +LK+L    ++
Sbjct: 77  NLPPQITVLEITQNALI-SLPELPASLE---YLDACDNRLS-TLPELPASLKHLD---VD 128

Query: 62  HKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASC 121
           + QLT  +P     L+ I A +N     +P+   +   L ++ + +N L   +P+   S 
Sbjct: 129 NNQLT-MLPELPALLEYINADNNQLT-MLPELPTS---LEVLSVRNNQLT-FLPELPESL 182

Query: 122 TELK----FLNLVSEGIFS----------------------STLGNLIVLESLDLSNNKL 155
             L      L  +                              + +L    ++ L +N L
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242

Query: 156 SGQIPQQFGELTSLEFFDVSDNL 178
           S +I +   + T+   +      
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 40/170 (23%)

Query: 12  LSGNQLTGP---IPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
              N ++G         +  E  +     +N+    +      +   S L L    L+  
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLINQFSELQLNRLNLS-S 73

Query: 69  IPSEIGK-LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
           +P  +   +  +  + N    S+P+     A+L  ++   N L   +P+  AS   L   
Sbjct: 74  LPDNLPPQITVLEITQNALI-SLPELP---ASLEYLDACDNRLS-TLPELPASLKHL--- 125

Query: 128 NLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                                D+ NN+L+  +P+    L  +   +  +N
Sbjct: 126 ---------------------DVDNNQLT-MLPELPALLEYI---NADNN 150

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 13/175 (7%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHK-QLTGRI 69
           L  N+LT         L  +  LWL  N +   IP      + +L  L L    +L+  I
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YI 176

Query: 70  PSEI----GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
                     L+ +  +  N R  IP        L  ++LS N L    P S      L+
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 126 FLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
            L ++    + I  +   NL  L  ++L++N L+      F  L  LE   +  N
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 45/207 (21%), Positives = 77/207 (37%), Gaps = 16/207 (7%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQLTG 67
            ++LS N +          L N++TL L  N+LT  IP      L  L  L L +  +  
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE- 149

Query: 68  RIPSEI----GKLKPIAASSNNFRGSIPQTC-KNEANLAMIELSSNLLEGRVPKSLASCT 122
            IPS        L+ +          I +   +  +NL  + L+   L   +P +L    
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLI 207

Query: 123 ELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV 179
           +L  L+L       I   +   L+ L+ L +  +++       F  L SL   +++ N  
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN- 266

Query: 180 IGPIPQG--KQFNTFETSSFDGNPGLC 204
           +  +P       +  E      NP  C
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 51/205 (24%), Positives = 79/205 (38%), Gaps = 19/205 (9%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           +   + L  NQ+        ++L ++  L L +N +          L NL+TL L   +L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 66  TGRIPSEI----GKLKPIAASSNNFRGSIPQTC-KNEANLAMIELSS-NLLEGRVPKSLA 119
           T  IP+       KLK +   +N    SIP        +L  ++L     L      +  
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 120 SCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
             + L++LNL    +     L  LI L+ LDLS N LS   P  F  L  L+   +  + 
Sbjct: 183 GLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS- 241

Query: 179 VIGPIPQGKQFNTFETSSFDGNPGL 203
                    Q    E ++FD    L
Sbjct: 242 ---------QIQVIERNAFDNLQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 13/141 (9%)

Query: 54  NLSTLCLEHKQLTGRIPSEI-GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG 112
             S +    K L   +P  I    + +    N  +     + K+  +L +++LS N +  
Sbjct: 44  QFSKVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102

Query: 113 RVPKSLASCTELKFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGE 165
               +      L  L L       +  G F      L  L+ L L NN +       F  
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFV----YLSKLKELWLRNNPIESIPSYAFNR 158

Query: 166 LTSLEFFDVSDNLVIGPIPQG 186
           + SL   D+ +   +  I +G
Sbjct: 159 IPSLRRLDLGELKRLSYISEG 179

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 23/187 (12%)

Query: 2   SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPF-------------- 47
            L   +  +  S N LT  +P   ++L+++         L+   P               
Sbjct: 88  ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 48  -EIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELS 106
            E+ N   L  + +++  L  ++P     L+ IAA +N     +P+   N   L  I   
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLE-ELPELQ-NLPFLTAIYAD 203

Query: 107 SNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGEL 166
           +N L+ ++P    S   +   N + E +    L NL  L ++   NN L   +P     L
Sbjct: 204 NNSLK-KLPDLPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLK-TLPDLPPSL 259

Query: 167 TSLEFFD 173
            +L   D
Sbjct: 260 EALNVRD 266

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 18/170 (10%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            ++L+   L+  +P    +LE   +L    N LT  +P    +LK+L       K L+  
Sbjct: 75  ELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129

Query: 69  IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
            P     L+ +  S+N     +P   +N + L +I++ +N L+ ++P    S   +   N
Sbjct: 130 PPL----LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGN 182

Query: 129 LVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
              E +    L NL  L ++   NN L  ++P     L S+      +N+
Sbjct: 183 NQLEEL--PELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNI 226

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 28/180 (15%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNL-------------KNLSTL 58
              + LT  +P   EN+++ +  +   ++     P   G               +    L
Sbjct: 18  RHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76

Query: 59  CLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSL 118
            L +  L+  +P     L+ + AS N+    +P+  ++  +L +   +   L    P   
Sbjct: 77  ELNNLGLS-SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-- 132

Query: 119 ASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                L++L + +  +     L N   L+ +D+ NN L  ++P     L  +      +N
Sbjct: 133 -----LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNN 183

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 20/166 (12%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
              N L   +P    +LE   ++    N L      E+ NL  L+T+  ++  L   +P 
Sbjct: 202 ADNNSLKK-LPDLPLSLE---SIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPD 254

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
               L+ +    N     +P+  ++   L + E   + L    P        L +LN  S
Sbjct: 255 LPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASS 306

Query: 132 EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
             I  S       LE L++SNNKL  ++P     L  L     S N
Sbjct: 307 NEI-RSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 28/167 (16%)

Query: 27  NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAAS---- 82
           +   +       + LT  +P E  N+K+ +       +     P   G+ + +A S    
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 83  -----------SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
                      +N    S+P+      +L  +  S N L   +P+   S   L   N   
Sbjct: 68  CLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNN-- 121

Query: 132 EGIFSSTLGNLI-VLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                  L +L  +LE L +SNN+L  ++P +    + L+  DV +N
Sbjct: 122 ---NLKALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNN 163

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 15/145 (10%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           +S N+L   +P     LE    L    N L   +P    NLK L    +E+  L    P 
Sbjct: 324 VSNNKLIE-LPALPPRLER---LIASFNHLA-EVPELPQNLKQLH---VEYNPLR-EFPD 374

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
               ++ +    N+    +P+  +N   L  + + +N L    P    S  +L+  +   
Sbjct: 375 IPESVEDL--RMNSHLAEVPELPQN---LKQLHVETNPLR-EFPDIPESVEDLRMNSERV 428

Query: 132 EGIFSSTLGNLIVLESLDLSNNKLS 156
              +         LE     ++   
Sbjct: 429 VDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 51/201 (25%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLK-----------------N 54
              N L       L+NL  ++T++ + N L   +P    +L+                 +
Sbjct: 222 AGNNILEELPE--LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQS 278

Query: 55  LSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRV 114
           L+ L +     +  +      L  + ASSN  R S+     +   L  + +S+N L   +
Sbjct: 279 LTFLDVSENIFS-GLSELPPNLYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-EL 332

Query: 115 PKSLASCTELKFLN--LVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELT----- 167
           P        L      L           NL   + L +  N L  + P     +      
Sbjct: 333 PALPPRLERLIASFNHLAE---VPELPQNL---KQLHVEYNPLR-EFPDIPESVEDLRMN 385

Query: 168 -----------SLEFFDVSDN 177
                      +L+   V  N
Sbjct: 386 SHLAEVPELPQNLKQLHVETN 406

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.6 bits (155), Expect = 4e-12
 Identities = 42/175 (24%), Positives = 61/175 (34%), Gaps = 13/175 (7%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHK-QLTGRI 69
           L  N LT       E L  +  LWL  N +   IP      + +L  L L    +L   I
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YI 187

Query: 70  PSEI----GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
                     LK +     N +  +P        L  +E+S N      P S    + LK
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 126 FLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
            L +++     I  +    L  L  L+L++N LS      F  L  L    +  N
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 52/205 (25%), Positives = 80/205 (39%), Gaps = 19/205 (9%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           +  Y+ L  N +         +L ++  L L +N +          L +L+TL L    L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 66  TGRIPSEI----GKLKPIAASSNNFRGSIPQTC-KNEANLAMIELSS-NLLEGRVPKSLA 119
           T  IPS       KL+ +   +N    SIP        +L  ++L     LE     +  
Sbjct: 136 T-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 120 SCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
               LK+LNL    I     L  L+ LE L++S N      P  F  L+SL+   V ++ 
Sbjct: 194 GLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS- 252

Query: 179 VIGPIPQGKQFNTFETSSFDGNPGL 203
                    Q +  E ++FDG   L
Sbjct: 253 ---------QVSLIERNAFDGLASL 268

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 17/210 (8%)

Query: 9   YIKLSGNQLT--GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
            + LS N L+  G          ++  L L  N +   +      L+ L  L  +H  L 
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 114

Query: 67  GRIPSEI----GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSN-LLEGRVPKSLASC 121
                 +      L  +  S  + R +        ++L +++++ N   E  +P      
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 122 TELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
             L FL+L    +     +   +L  L+ L++S+N         +  L SL+  D S N 
Sbjct: 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

Query: 179 VIGPIPQGKQFNTFETS----SFDGNPGLC 204
            I    +  +   F +S    +   N   C
Sbjct: 235 -IMTSKKQ-ELQHFPSSLAFLNLTQNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 25/210 (11%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLT--GCIPFEIGNLKNLSTLCLEHK 63
               ++L  N+L        + L  ++ L L  N L+  GC         +L  L L   
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 64  QLTGRIPS---EIGKLKPIAASSNNFRGSIPQ--TCKNEANLAMIELSSNLLEGRVPKSL 118
            +   + S    + +L+ +    +N +  + +     +  NL  +++S            
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 119 ASCTELKFLNL----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQ-FGELTSLEFFD 173
              + L+ L +      E         L  L  LDLS  +L  Q+    F  L+SL+  +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

Query: 174 VSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203
           +S N           F + +T  +     L
Sbjct: 206 MSHN----------NFFSLDTFPYKCLNSL 225

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 98  ANLAMIELSSNLLEGRVPKSLASCTELKFLNL-----VSEGIFSSTLGNLIVLESLDLSN 152
           ++   +EL SN L+          T+L  L+L       +G  S +      L+ LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 153 NKLSGQIPQQFGELTSLEFFDVSDN 177
           N +   +   F  L  LE  D   +
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHS 111

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 37/179 (20%), Positives = 61/179 (34%), Gaps = 19/179 (10%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQLTGRIP 70
           L  N L          L  +  L L  N     +       L  L TL L+   L   + 
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELG 121

Query: 71  SEI----GKLKPIAASSNNFRGSIP-QTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
             +      L+ +    N  + ++P  T ++  NL  + L  N +     ++      L 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 126 FLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
            L L       V    F     +L  L +L L  N LS    +    L +L++  ++DN
Sbjct: 181 RLLLHQNRVAHVHPHAFR----DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 43/214 (20%), Positives = 68/214 (31%), Gaps = 22/214 (10%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEH-KQ 64
               I L GN+++           N++ LWL  N L          L  L  L L    Q
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 65  LTGRIPSEI----GKLKPIAASSNNFRGSIPQTC-KNEANLAMIELSSNLLEGRVPKSLA 119
           L   +        G+L  +       +  +     +  A L  + L  N L+     +  
Sbjct: 93  LR-SVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 120 SCTELKFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFF 172
               L  L L       V E  F      L  L+ L L  N+++   P  F +L  L   
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFR----GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 173 DVSDNLVIGPIPQG--KQFNTFETSSFDGNPGLC 204
            +  N  +  +P          +    + NP +C
Sbjct: 207 YLFANN-LSALPTEALAPLRALQYLRLNDNPWVC 239

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 29/169 (17%), Positives = 52/169 (30%), Gaps = 24/169 (14%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           L    +     Y  + L  +  L +        +        NL++L + H  LT  +P 
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP- 240

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
                                  ++   L  + LS N +       L     L+ + LV 
Sbjct: 241 -------------------YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 132 ---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                +       L  L  L++S N+L+      F  + +LE   +  N
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 10/187 (5%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           +   + L  N++         +  ++  L L +N ++   P    NL NL TL L   +L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 66  TGRIPSEI----GKLKPIAASSNNFRGSIPQTC-KNEANLAMIELSSNLLEGRVPKSLAS 120
              IP  +      L  +  S N     +     ++  NL  +E+  N L     ++ + 
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 121 CTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
              L+ L L       I +  L +L  L  L L +  ++      F  L  L+  ++S  
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 178 LVIGPIP 184
             +  + 
Sbjct: 211 PYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 23/155 (14%)

Query: 57  TLCLEHKQLTGRIPSEI-GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP 115
            +    K+    +P  I  + + +    N  +        +  +L  +EL+ N++    P
Sbjct: 15  AVLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73

Query: 116 KSLASCTELKFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTS 168
            +  +   L+ L L       +  G+F+     L  L  LD+S NK+   +   F +L +
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFT----GLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 169 LEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203
           L+  +V DN                  +F G   L
Sbjct: 130 LKSLEVGDN----------DLVYISHRAFSGLNSL 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 13/175 (7%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
                 T  IP  L     + +L L  N++T     ++    NL  L L+  ++   I  
Sbjct: 12  GRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEG 67

Query: 72  EI----GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLL-EGRVPKSLASCTELKF 126
           +     G L+ +  S N+            ++L  + L  N      V     + T L+ 
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 127 LNL----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           L +        I       L  L  L++    L     Q    +  +    +  +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 24/194 (12%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            +++    L       L+++ +I  L L  ++    +      L ++  L L    L   
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

Query: 69  IPSEIGKLKP-------------IAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP 115
             S +   +              +   S N    + +     + +   + + N L    P
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271

Query: 116 KSLASCTELKFLNLVS-----------EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFG 164
                 +EL  +  V+               S+    L  ++ + + N+K+         
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

Query: 165 ELTSLEFFDVSDNL 178
            L SLEF D+S+NL
Sbjct: 332 HLKSLEFLDLSENL 345

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 33/186 (17%), Positives = 71/186 (38%), Gaps = 12/186 (6%)

Query: 2   SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCL 60
            L   +  + LS N++T      L    N+  L L+ +++   I  +   +L +L  L L
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDL 81

Query: 61  EHKQLTGRIPSEI----GKLKPIAASSNNFRG-SIPQTCKNEANLAMIELSSNLLEGRVP 115
               L+  + S        LK +    N ++   +     N  NL  + + +      + 
Sbjct: 82  SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 116 K-SLASCTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEF 171
           +   A  T L  L + +       S +L ++  +  L L  ++ +  +      L+S+ +
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 172 FDVSDN 177
            ++ D 
Sbjct: 201 LELRDT 206

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 9   YIKLSGNQLT---GPIPYWLENLENISTLWLEKNQLT--GCIPFEIGNLKNLSTLCLEHK 63
           ++ LS N +               ++ TL L +N L         +  LKNL++L +   
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397

Query: 64  QLTGRIPSEIGKLKPIA---ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
                +P      + +     SS   R  +         L ++++S+N L+      L  
Sbjct: 398 TFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFL-- 450

Query: 121 CTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
              L+ L +    + +        VL  + +S N+L       F  LTSL+   +  N
Sbjct: 451 -PRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 14/153 (9%)

Query: 9   YIKLSGNQLT--GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
            + LS N L         L  L+N+++L + +N     +P      + +  L L    + 
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR 423

Query: 67  GRIPSEI-GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
             + + I   L+ +  S+NN   S          L  + +S N L+  +P + +    L 
Sbjct: 424 -VVKTCIPQTLEVLDVSNNNLD-SFS---LFLPRLQELYISRNKLK-TLPDA-SLFPVLL 476

Query: 126 FLNLVS---EGIFSSTLGNLIVLESLDLSNNKL 155
            + +     + +       L  L+ + L  N  
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 23/193 (11%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           D   + L  N++T       +NL+N+ TL L  N+++   P     L  L  L L   QL
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 66  TGRIPSEI-GKLKPIAASSNNFRGSIPQTC-KNEANLAMIELSSNLLEGRV--PKSLASC 121
              +P ++   L+ +    N     + ++       + ++EL +N L+       +    
Sbjct: 113 K-ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 122 TELKFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQ-FGELTSLEFFD 173
            +L ++ +       + +G+  S       L  L L  NK++ ++       L +L    
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPS-------LTELHLDGNKIT-KVDAASLKGLNNLAKLG 222

Query: 174 VSDNLVIGPIPQG 186
           +S N  I  +  G
Sbjct: 223 LSFNS-ISAVDNG 234

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 37/188 (19%), Positives = 64/188 (34%), Gaps = 15/188 (7%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLT-GCIPFEI-GNLKNLSTLCLEHKQLTGRI 69
           +  N++T         L  +  + L  N L    I       +K LS + +    +T  I
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI 186

Query: 70  PSEI-GKLKPIAASSNNFRGSIPQTC-KNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
           P  +   L  +    N     +     K   NLA + LS N +      SLA+   L+ L
Sbjct: 187 PQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245

Query: 128 NLVSEGI--FSSTLGNLIVLESLDLSNNKLSG------QIPQQFGELTSLEFFDVSDN-L 178
           +L +  +      L +   ++ + L NN +S         P    +  S     +  N +
Sbjct: 246 HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 179 VIGPIPQG 186
               I   
Sbjct: 306 QYWEIQPS 313

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 33/154 (21%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           L GN++T      L+ L N++ L L  N ++      + N  +L  L L + +L      
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV----- 253

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG------RVPKSLASCTELK 125
                             +P    +   + ++ L +N +          P          
Sbjct: 254 -----------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 126 FLNLVS-----EGIFSSTLGNLIVLESLDLSNNK 154
            ++L S       I  ST   + V  ++ L N K
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 14/177 (7%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +S   ++ Y+    N+LT  +   +  L  ++ L  + N+LT     ++     L+ L  
Sbjct: 81  LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNC 134

Query: 61  EHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
               LT    S   +L  +    N     +      +  L  ++ S N +       ++ 
Sbjct: 135 ARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQ 189

Query: 121 CTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
              L  LN  +  I    L   I L  LD S+NKL+ +I      LT L +FD S N
Sbjct: 190 NKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVN 243

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 14/177 (7%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +S    +  +    N +T  +   L     ++ L    N+LT     ++  L  L+    
Sbjct: 187 VSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDC 240

Query: 61  EHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
               LT    S + KL  +     +    I        N  +I   +          +  
Sbjct: 241 SVNPLTELDVSTLSKLTTLHCIQTDLL-EID----LTHNTQLIYFQAEGCRKIKELDVTH 295

Query: 121 CTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
            T+L  L+  + GI    L     L  L L+N +L+ ++       T L+     + 
Sbjct: 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNA 349

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 13/177 (7%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           ++    + ++  S N+LT  I   +  L  ++      N LT     ++  L  L+TL  
Sbjct: 208 LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHC 261

Query: 61  EHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
               L     +   +L    A        +  T      L +++  +  +       L+ 
Sbjct: 262 IQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT--QLYLLDCQAAGIT---ELDLSQ 316

Query: 121 CTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
             +L +L L +  +    + +   L+SL   N  +        G++ +L     ++ 
Sbjct: 317 NPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 32/173 (18%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
            +  ++        E L  +++L    + +T  +   I  L  L+ L      +T     
Sbjct: 25  AAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT---L 79

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
           ++ +                       NL  +   SN L       +   T+L +LN  +
Sbjct: 80  DLSQNT---------------------NLTYLACDSNKLTN---LDVTPLTKLTYLNCDT 115

Query: 132 EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
             +    +    +L  L+ + N L+ +I       T L   D   N  I  + 
Sbjct: 116 NKLTKLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 51  NLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLL 110
           N  +      E +        ++  L  +   +++    +    K    L  +  +SN +
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLT-GLTKLICTSNNI 76

Query: 111 EGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLE 170
                  L+  T L +L   S  + +  +  L  L  L+   NKL+        +   L 
Sbjct: 77  TT---LDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLT 130

Query: 171 FFDVSDN 177
           + + + N
Sbjct: 131 YLNCARN 137

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 25/150 (16%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            + ++    T   P  +  L N+  L +    +T      +  L +L+ L + H      
Sbjct: 70  DLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 69  IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
           I ++I  L                       +  I+LS N         L +  ELK LN
Sbjct: 128 ILTKINTLP---------------------KVNSIDLSYNGAI-TDIMPLKTLPELKSLN 165

Query: 129 LVSEGIFS-STLGNLIVLESLDLSNNKLSG 157
           +  +G+     + +   L  L   +  + G
Sbjct: 166 IQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 31/158 (19%)

Query: 26  ENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNN 85
              +      L ++            + +L+ + L +  +T         L  I  + N 
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT--------DLTGIEYAHN- 67

Query: 86  FRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNL 142
                         +  + +++          ++  + L+ L ++ + + S     L  L
Sbjct: 68  --------------IKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 143 IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180
             L  LD+S++     I  +   L  +   D+S N  I
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 47/171 (27%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           + YI L+   +T      +E   NI  L +     T   P  I  L NL  L +  K +T
Sbjct: 46  LTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 67  GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKF 126
                 +  L                      +L ++++S +  +  +   + +  ++  
Sbjct: 102 SDKIPNLSGLT---------------------SLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 127 LNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           ++L                      N  ++         L  L+  ++  +
Sbjct: 141 IDL--------------------SYNGAITD--IMPLKTLPELKSLNIQFD 169

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 1e-10
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 14/169 (8%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP- 70
                +    P   +         L+K  +T  +      L ++  +   +  +   +  
Sbjct: 6   TVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG 60

Query: 71  -SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL 129
              +  +  +  + N     I      + NL  + L  N ++      L    +LK L+L
Sbjct: 61  IQYLPNVTKLFLNGNKLT-DIKPLTNLK-NLGWLFLDENKIKDLSS--LKDLKKLKSLSL 116

Query: 130 VSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
              GI   + L +L  LESL L NNK++         LT L+   + DN
Sbjct: 117 EHNGISDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 163

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 4e-09
 Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 12/207 (5%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           I    ++  + L+GN+LT   P  L NL+N+  L+L++N++      +  +LK L +L L
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLK--DLKKLKSLSL 116

Query: 61  EHKQLTGRIP--SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSL 118
           EH  ++  I     + +L+ +   +N    +          L  + L  N +   VP  L
Sbjct: 117 EHNGIS-DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--L 171

Query: 119 ASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           A  T+L+ L L    I     L  L  L+ L+L + +   +       L        +D 
Sbjct: 172 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 178 LVIGPIPQGKQFNTFETSSFDGNPGLC 204
            ++ P       +  + +     P   
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWHLPEFT 258

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 35/173 (20%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           LS N L       L     ++ L L++ +LT       G L  L TL L H QL      
Sbjct: 38  LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ----- 90

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL-- 129
                            S+P   +    L ++++S N L      +L    EL+ L L  
Sbjct: 91  -----------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 130 -----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                +  G+ +        LE L L+NN L+         L +L+   + +N
Sbjct: 134 NELKTLPPGLLTP----TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 98  ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLS 156
            +  ++ LS NLL      +L   T L  LNL    +      G L VL +LDLS+N+L 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 157 GQIPQQFGELTSLEFFDVSDN 177
             +P     L +L   DVS N
Sbjct: 91  -SLPLLGQTLPALTVLDVSFN 110

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 22/180 (12%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT-G 67
            + +S N L    P    +L     L +  N++          L+N++ + +    L   
Sbjct: 106 KLYISKNHLVEIPPNLPSSLVE---LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 68  RIPSEI---GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTEL 124
                     KL  +  S       IP+       L  + L  N ++    + L   ++L
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 125 KFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
             L L       +  G  S     L  L  L L NNKLS ++P    +L  L+   +  N
Sbjct: 220 YRLGLGHNQIRMIENGSLS----FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 19/182 (10%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           D   + L  N ++       + L+++  L L  N+++         L+ L  L +    L
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 66  TGRIPSEI-GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLL-EGRVPKSLASCTE 123
              IP  +   L  +    N  R           N+  IE+  N L             +
Sbjct: 115 V-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 124 LKFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQ-FGELTSLEFFDVS 175
           L +L +       + + +  +       L  L L +NK+   I  +     + L    + 
Sbjct: 174 LNYLRISEAKLTGIPKDLPET-------LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLG 225

Query: 176 DN 177
            N
Sbjct: 226 HN 227

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 37/182 (20%), Positives = 59/182 (32%), Gaps = 21/182 (11%)

Query: 12  LSGNQLT-GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP 70
           + GN L          +   ++ L + + +LTG IP      + L+ L L+H ++   I 
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK--DLPETLNELHLDHNKIQ-AIE 209

Query: 71  SEI----GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKF 126
            E      KL  +    N  R     +      L  + L +N L  RVP  L     L+ 
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268

Query: 127 LNL-------VSEGIFSS--TLGNLIVLESLDLSNNKLSGQI--PQQFGELTSLEFFDVS 175
           + L       V    F              + L NN +      P  F  +T        
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

Query: 176 DN 177
           + 
Sbjct: 329 NY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 25/146 (17%), Positives = 44/146 (30%), Gaps = 35/146 (23%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            + L  NQ+       L  L  +  L L+ N+L+  +P  + +LK L  + L    +T +
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-K 278

Query: 69  IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
           +              N+F           A    I L +N +                  
Sbjct: 279 VGV------------NDFCPVGFGV--KRAYYNGISLFNNPVP---------------YW 309

Query: 129 LVSEGIFSSTLGNLIVLESLDLSNNK 154
            V    F      +    ++   N K
Sbjct: 310 EVQPATFR----CVTDRLAIQFGNYK 331

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 23/195 (11%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLW---LEKNQLTGCIPFEIGNL--KNLSTLCL 60
            +  + +   ++   I +    +  IS L    LE  ++TG  P  +      +L+ L L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 61  EHKQLTGRIPS-------EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGR 113
            +     R              LK ++ +  +      +  +    L+ ++LS N   G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 114 VPKSLASC----TELKFLNLVS------EGIFSSTLGNLIVLESLDLSNNKLSGQIP-QQ 162
                A C      L+ L L +       G+ S+     + L+ LDLS+N L        
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 163 FGELTSLEFFDVSDN 177
               + L   ++S  
Sbjct: 249 CDWPSQLNSLNLSFT 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.3 bits (120), Expect = 8e-08
 Identities = 36/199 (18%), Positives = 59/199 (29%), Gaps = 31/199 (15%)

Query: 6   DIIYIKLSGNQLTGPIPYWLE----NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLE 61
           D+  + L          +  E        +  L + +         ++     LSTL L 
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 62  HKQLTGRI-------PSEIGKLKPIAASSNNFR---GSIPQTCKNEANLAMIELSSNLLE 111
                G         P +   L+ +A  +       G           L  ++LS N L 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 112 GRVPKSLAS-CTELKFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQF 163
                      ++L  LNL       V +G+ +        L  LDLS N+L    P   
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK-------LSVLDLSYNRLDR-NP-SP 292

Query: 164 GELTSLEFFDVSDNLVIGP 182
            EL  +    +  N  +  
Sbjct: 293 DELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 104 ELSSNLLEGRVPKSLASCTELKF-------LNLVSEGIFSSTLGNLIV--LESLDLSNNK 154
            L +  + G  P  L   T           ++  +   + + L   +   L+ L ++   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 155 LSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
                 +Q     +L   D+SDN  +G   
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 35/181 (19%), Positives = 54/181 (29%), Gaps = 36/181 (19%)

Query: 6   DIIYIKLSGNQLTGPIPYW-LENLENISTLWLEKNQLTGCIP---FEIGNLKNLSTLCLE 61
               + LS N L+     W    L N+ +L L  N L   I    F    + NL  L L 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFV--PVPNLRYLDLS 96

Query: 62  HKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASC 121
              L   +   +            F             L ++ L +N +      +    
Sbjct: 97  SNHLH-TLDEFL------------FSDL--------QALEVLLLYNNHIVVVDRNAFEDM 135

Query: 122 TELKFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDV 174
            +L+ L L           +       L  L  LDLS+NKL         +L +     +
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKD-GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 175 S 175
            
Sbjct: 195 Y 195

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 17/169 (10%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
            + +  T         L  +  L ++ + L    P  + +++N+S L L  KQ    +  
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE 215

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
                            +    C    +  +     + L      SL      + + +  
Sbjct: 216 ------------IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 132 EGIFS--STLGNLIVLESLDLSNNKLSGQIPQQ-FGELTSLEFFDVSDN 177
           E +F     L  +  L  L+ S N+L   +P   F  LTSL+   +  N
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 25/154 (16%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            +++  + L    P  L++++N+S L L   Q    +   +    ++  L L    L   
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 69  IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128
             SE+        S+             +     ++++   L  +V K L   + L  L 
Sbjct: 238 HFSEL--------STGETNS-----LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELE 283

Query: 129 L-------VSEGIFSSTLGNLIVLESLDLSNNKL 155
                   V +GIF      L  L+ + L  N  
Sbjct: 284 FSRNQLKSVPDGIFD----RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 40/205 (19%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQ 64
            +  + LS N++T      L+   N+  L L  N +   I  +   +L +L  L L +  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNY 111

Query: 65  LTGRIPSEI----GKLKPIAASSNNFRGSIPQTC--KNEANLAMIELSSNLLEGRVPKSL 118
           L+  + S        L  +    N ++ ++ +T    +   L ++ + +           
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT-------- 161

Query: 119 ASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
                      +    F+     L  LE L++  + L    P+    + ++    +    
Sbjct: 162 --------FTKIQRKDFA----GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK- 208

Query: 179 VIGPIPQGKQFNTFETSSFDGNPGL 203
                    Q         D    +
Sbjct: 209 ---------QHILLLEIFVDVTSSV 224

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 14/101 (13%)

Query: 98  ANLAMIELSSNLLEGRVPKSLASCTELKFLNL-------VSEGIFSSTLGNLIVLESLDL 150
             +  ++LS+N +       L  C  L+ L L       + E  FS    +L  LE LDL
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS----SLGSLEHLDL 107

Query: 151 SNNKLSGQIPQQ-FGELTSLEFFDVSDNLVIGPIPQGKQFN 190
           S N LS  +    F  L+SL F ++  N     + +   F+
Sbjct: 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFS 146

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 42/177 (23%), Positives = 67/177 (37%), Gaps = 10/177 (5%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
            ++LSGN L       +  L++I TL L   Q+T   P     L NL  L L+  Q+T  
Sbjct: 89  ELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNI 144

Query: 69  IP-SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
            P + +  L+ ++  +       P    N + L  ++   N +       LAS   L  +
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEV 200

Query: 128 NLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183
           +L +  I   S L N   L  + L+N  ++ Q       L             I P 
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 26/154 (16%), Positives = 58/154 (37%), Gaps = 30/154 (19%)

Query: 25  LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSN 84
              L N   +   K+ +T  +     +L  ++TL      +T         ++ +     
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT--------TIEGV----- 59

Query: 85  NFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLI 143
                     +   NL  +EL  N +       L + T++  L L    + + S +  L 
Sbjct: 60  ----------QYLNNLIGLELKDNQIT--DLAPLKNLTKITELELSGNPLKNVSAIAGLQ 107

Query: 144 VLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
            +++LDL++ +++   P     L++L+   +  N
Sbjct: 108 SIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN 139

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 31/160 (19%)

Query: 25  LENLENISTLWLE-----KNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPI 79
              L+ +  +        +++             ++  L L HK LT  +   + +L   
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLL-- 463

Query: 80  AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-ST 138
                               +  ++LS N L   +P +LA+   L+ L      + +   
Sbjct: 464 -------------------LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG 503

Query: 139 LGNLIVLESLDLSNNKLSG-QIPQQFGELTSLEFFDVSDN 177
           + NL  L+ L L NN+L      Q       L   ++  N
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 6e-06
 Identities = 27/156 (17%), Positives = 47/156 (30%), Gaps = 46/156 (29%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
                D+  + L+   LT  + + LE L  ++ L L  N+L   +P  +  L+ L  L  
Sbjct: 437 KMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQA 493

Query: 61  EHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
               L   +   +  L                       L  + L +N L+         
Sbjct: 494 SDNALE-NVD-GVANLP---------------------RLQELLLCNNRLQ--------Q 522

Query: 121 CTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLS 156
              ++             L +   L  L+L  N L 
Sbjct: 523 SAAIQ------------PLVSCPRLVLLNLQGNSLC 546

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 12/176 (6%)

Query: 11  KLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT---- 66
            LS +           +  + + L   +N  T  +      LK L TL L+   L     
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 67  -GRIPSEIGKLKPIAASSNNF-RGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTEL 124
              +   +  L+ +  S N+    +  +TC    ++ ++ LSSN+L G V + L    ++
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KV 452

Query: 125 KFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQ-QFGELTSLEFFDVSDN 177
           K L+L +  I      + +L  L+ L++++N+L   +P   F  LTSL++  + DN
Sbjct: 453 KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN 507

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 26/170 (15%)

Query: 2   SLCFDII----YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIG---NLKN 54
            LC   I    ++  S N LT  +     +L  + TL L+ NQL   +         +K+
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQMKS 375

Query: 55  LSTLCLEHKQLTGRIPSEI----GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLL 110
           L  L +    ++             L  +  SSN    +I +       + +++L SN +
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--CLPPRIKVLDLHSNKI 433

Query: 111 EGRVPKSLASCTELKFLNL-------VSEGIFSSTLGNLIVLESLDLSNN 153
           +  +PK +     L+ LN+       V +GIF      L  L+ + L  N
Sbjct: 434 K-SIPKQVVKLEALQELNVASNQLKSVPDGIFD----RLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 22/181 (12%)

Query: 11  KLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP 70
             + +            +     L    N LT  +    G+L  L TL L+  QL   + 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELS 364

Query: 71  SEIG------KLKPIAASSNNFRGSIPQ-TCKNEANLAMIELSSNLLEGRVPKSLASCTE 123
                      L+ +  S N+      +  C    +L  + +SSN+L   + + L     
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--R 422

Query: 124 LKFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSD 176
           +K L+L       + + +       L  L+ L++++N+L       F  LTSL+   +  
Sbjct: 423 IKVLDLHSNKIKSIPKQVV-----KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

Query: 177 N 177
           N
Sbjct: 478 N 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 26/161 (16%), Positives = 44/161 (27%), Gaps = 28/161 (17%)

Query: 30  NISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGS 89
             + L + +N ++     +I +L  L  L + H ++   +                    
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLD------------------- 61

Query: 90  IPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVL 145
                K    L  ++LS N L             LK L+L      +       GN+  L
Sbjct: 62  -ISVFKFNQELEYLDLSHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 146 ESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG 186
           + L LS   L          L   +   V            
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 3   LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL-- 60
             F I  +KL G        Y   +L+ +S   +  +       +      N++      
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309

Query: 61  -EHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE--GRVPKS 117
              + +    PS+I     +  S+N    ++ + C +   L  + L  N L+   ++ + 
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 118 LASCTELKFL----NLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFD 173
                 L+ L    N VS             L SL++S+N L+  I +       ++  D
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD 427

Query: 174 VSDN 177
           +  N
Sbjct: 428 LHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 13/180 (7%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT-- 66
            + +S N++        +  + +  L L  N+L   I        NL  L L        
Sbjct: 49  ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFDAL 105

Query: 67  --GRIPSEIGKLKPIAASSNNFRGSIPQTCKN-EANLAMIELSSNLLEGRVPKSLASCTE 123
              +    + +LK +  S+ +   S      +   +  ++ L     E   P+ L     
Sbjct: 106 PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165

Query: 124 LKF-LNLVSEGIFSSTLG----NLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
               +   +   F   L      +  LE  ++       +       L  L+      NL
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 12/156 (7%)

Query: 25  LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAAS 82
            +         L+K  +T  +      L ++  +   +  +   +     +  +  +  +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLN 76

Query: 83  SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGN 141
            N     I     N  NL  + L  N +  +   SL    +LK L+L   GI   + L +
Sbjct: 77  GNKLT-DIKP-LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           L  LESL L NNK++         LT L+   + DN
Sbjct: 133 LPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 166

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 12/185 (6%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           I    ++  + L+GN+LT   P  L NL+N+  L+L++N++      +  +LK L +L L
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSL 119

Query: 61  EHKQLTGRIP--SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSL 118
           EH  ++  I     + +L+ +   +N    +          L  + L  N +       L
Sbjct: 120 EHNGIS-DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS--DIVPL 174

Query: 119 ASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           A  T+L+ L L    I     L  L  L+ L+L + +   +       L        +D 
Sbjct: 175 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 178 LVIGP 182
            ++ P
Sbjct: 235 SLVTP 239

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 48/180 (26%), Positives = 72/180 (40%), Gaps = 22/180 (12%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQLTGRIP 70
           L  N+L+         L  +  L+L  N+L   +P  I   LKNL TL +   +L   +P
Sbjct: 44  LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ-ALP 101

Query: 71  SEI----GKLKPIAASSNNFRGSIPQTC-KNEANLAMIELSSNLLEGRVPKSL-ASCTEL 124
             +      L  +    N  + S+P     +   L  + L  N L+  +PK +    T L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSL 159

Query: 125 KFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           K L L       V EG F      L  L++L L NN+L       F  L  L+   + +N
Sbjct: 160 KELRLYNNQLKRVPEGAFD----KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 18/160 (11%)

Query: 30  NISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI----GKLKPIAASSNN 85
           +   L L+ N+L+         L  L  L L   +L   +P+ I      L+ +  + N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK 96

Query: 86  FRGSIP-QTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL-------VSEGIFSS 137
            + ++P        NLA + L  N L+   P+   S T+L +L+L       + +G+F  
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155

Query: 138 TLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
               L  L+ L L NN+L       F +LT L+   + +N
Sbjct: 156 ----LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           ++   L            +I+TL L  N     +     +    + +       +  + S
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 72  EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL-- 129
             G        +  F+G         + +   +LS + +   +    +  T+L+ L L  
Sbjct: 255 SFGHTNFKDPDNFTFKG------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308

Query: 130 -----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
                + +  F      L  L  L+LS N L     + F  L  LE  D+S N       
Sbjct: 309 NEINKIDDNAFW----GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN------- 357

Query: 185 QGKQFNTFETSSFDGNPGL 203
                      SF G P L
Sbjct: 358 ---HIRALGDQSFLGLPNL 373

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 26/154 (16%)

Query: 30  NISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGS 89
           +++ + L  N +          L++L  L +E +     I                    
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR------------------- 71

Query: 90  IPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLG-----NLIV 144
              T +  ++L +++L  N        +      L+ L L    +  + L       L  
Sbjct: 72  -NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130

Query: 145 LESLDLSNNKLSGQIPQ-QFGELTSLEFFDVSDN 177
           LE L L +N +    P   F  +      D++ N
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 36/184 (19%)

Query: 4   CFDIIYIKLSGNQLTGPIPYWLENLE--NISTLWLEKNQLTGCIPFEI-GNLKNLSTLCL 60
               +           P  +  + LE   + T  L K+++   +   +  +  +L  L L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTL 306

Query: 61  EHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
              ++  +I                F G          +L  + LS N L     +   +
Sbjct: 307 AQNEIN-KIDDNA------------FWGL--------THLLKLNLSQNFLGSIDSRMFEN 345

Query: 121 CTELKFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFD 173
             +L+ L+L       + +  F      L  L+ L L  N+L       F  LTSL+   
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFL----GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401

Query: 174 VSDN 177
           +  N
Sbjct: 402 LHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 28/173 (16%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQ 64
            + Y+ LS N +          L+++  L +E+      I       L +L  L L++ Q
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 65  LTGRIPSEI----GKLKPIAASSNNFRGS-IPQTC-KNEANLAMIELSSNLLEGRVPKSL 118
              ++ +        L+ +  +  N  G+ +     K   +L M+ L  N ++       
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK------- 142

Query: 119 ASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEF 171
                     +     F     N+     LDL+ NK+     +         F
Sbjct: 143 ---------KIQPASFFL----NMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 98  ANLAMIELSSNLLEGRVPKSLASCTELKFLNL----VSEGIFSSTLGNLIVLESLDLSNN 153
           A++  ++LS N +      S +   +L+FL +        I ++T   L  L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 154 KLSGQIPQQFGELTSLEFFDVSDN-LVIGPIPQG 186
           +        F  L +LE   ++   L    +   
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN 123

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 28/188 (14%)

Query: 9   YIKLSGNQLTGPIPYWL-ENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQLT 66
            + LS  ++   I     ++L ++STL L  N +   +       L +L  L      L 
Sbjct: 56  VLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA 113

Query: 67  GRIPSEI----GKLKPIAASSNNFRGSIPQ--TCKNEANLAMIELSSNLLEGRVPKSLAS 120
             + +        LK +  + N  + S        N  NL  ++LSSN ++      L  
Sbjct: 114 -SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 121 CTELKFLNL-----------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSL 169
             ++  LNL           +  G F       I L+ L L  N+L       F  LTSL
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKE-----IRLKELALDTNQLKSVPDGIFDRLTSL 226

Query: 170 EFFDVSDN 177
           +   +  N
Sbjct: 227 QKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 23/168 (13%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP---FEIGNLKNLSTLCLEH 62
               + LS N L     Y   +   +  L L + ++   I    ++  +L +LSTL L  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQ--SLSHLSTLILTG 85

Query: 63  KQLTGRIPSEI----GKLKPIAASSNNFRGSIPQTC-KNEANLAMIELSSN-LLEGRVPK 116
             +   +          L+ + A   N   S+      +   L  + ++ N +   ++P+
Sbjct: 86  NPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 117 SLASCTELKFLNL-------VSEGIFSSTLGNLIVLE-SLDLSNNKLS 156
             ++ T L+ L+L       +        L  + +L  SLDLS N ++
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMN 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 9/178 (5%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           +       + +       ++   N+  L L  NQ++   P +  +L  L  L +   +L 
Sbjct: 43  VQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSPLK--DLTKLEELSVNRNRLK 98

Query: 67  GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKF 126
                    L  +   +N        +  +  NL ++ + +N L+      L   ++L+ 
Sbjct: 99  NLNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK--SIVMLGFLSKLEV 154

Query: 127 LNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183
           L+L    I +   L  L  +  +DL+  K   +  +   EL         D   I P 
Sbjct: 155 LDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 29/153 (18%)

Query: 25  LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSN 84
              L N     L K  +T  +  +   L  +     ++  +          L  +     
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ--------SLAGM----- 59

Query: 85  NFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIV 144
                     +   NL  + LS N +       L   T+L+ L++    + +        
Sbjct: 60  ----------QFFTNLKELHLSHNQIS--DLSPLKDLTKLEELSVNRNRLKNLNGIPSAC 107

Query: 145 LESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           L  L L NN+L          L +LE   + +N
Sbjct: 108 LSRLFLDNNELRD--TDSLIHLKNLEILSIRNN 138

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 24/189 (12%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEH-K 63
           + I ++    +L            ++  + + +N +   I  ++  NL  L  + +E   
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 64  QLTGRIPSEI----GKLKPIAASSNNFRGSIPQ-TCKNEANLAMIELSSNLLEGRVP-KS 117
            L   I  E       L+ +  S+   +  +P     +     ++++  N+    +   S
Sbjct: 91  NLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 118 LASCT-ELKFLNL-------VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQ-FGELTS 168
               + E   L L       +    F+       + E     NN L  ++P   F   + 
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNG----TQLDELNLSDNNNLE-ELPNDVFHGASG 203

Query: 169 LEFFDVSDN 177
               D+S  
Sbjct: 204 PVILDISRT 212

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 19/145 (13%)

Query: 54  NLSTLCLEHKQLTGRIPSEI-GKLKPIAASSNNFRGSIPQTC-KNEANLAMIELSSNLLE 111
           +      +  ++T  IPS++      +       R  I +       +L  IE+S N + 
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL 67

Query: 112 GRVP----KSLASCTELKFLNL-----VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQ- 161
             +      +L    E++         ++   F     NL  L+ L +SN  +   +P  
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ----NLPNLQYLLISNTGIK-HLPDV 122

Query: 162 QFGELTSLEFFDVSDNLVIGPIPQG 186
                      D+ DN+ I  I + 
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERN 147

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 6e-06
 Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 16/123 (13%)

Query: 91  PQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS----EGIFSSTLGNLIVLE 146
           P  C    +  +       L+      L     L  L + +    + +    L  L  L 
Sbjct: 2   PDACCPHGSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR 59

Query: 147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSS-----FDGNP 201
           +L +  + L    P  F     L   ++S N  +  +       T +  S       GNP
Sbjct: 60  NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWK----TVQGLSLQELVLSGNP 114

Query: 202 GLC 204
             C
Sbjct: 115 LHC 117

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 21/87 (24%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 95  KNEANLAMIELSSN-LLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSN 152
           +  +++  + L ++   EG++        EL+FL+ ++ G+ S + L  L  L+ L+LS+
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSD 73

Query: 153 NKLSGQIPQQFGELTSLEFFDVSDNLV 179
           N++SG +     +  +L   ++S N +
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 95  KNEANLAMIELS-SNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSN 152
           +  A +  + L      +G++    A    L+FL+L++ G+ S S L  L  L+ L+LS 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSE 80

Query: 153 NKLSGQIPQQFGELTSLEFFDVSDNLV 179
           N++ G +     +L +L   ++S N +
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 99  NLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSG 157
               ++L    +   +    A+  +   ++     I        L  L++L ++NN++  
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR 78

Query: 158 QIPQQFGELTSLEFFDVSDNLV--IGPIPQGKQFNTFETSSFDGNP 201
                   L  L    +++N +  +G +       +        NP
Sbjct: 79  IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 44/183 (24%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
            I  I  + + +        + L N+  L L  N+L      +   L NL+ L L   QL
Sbjct: 42  SIDQIIANNSDIKSVQGI--QYLPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQL 97

Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSN---LLEGRVPKSLASCT 122
              +P+ +            F            NL  + L  N    L   V   L   T
Sbjct: 98  Q-SLPNGV------------FDKL--------TNLKELVLVENQLQSLPDGVFDKL---T 133

Query: 123 ELKFLNLVS-------EGIFSSTLGNLIVLESLDLSNNKLSGQIPQ-QFGELTSLEFFDV 174
            L +LNL         +G+F      L  L  LDLS N+L   +P+  F +LT L+   +
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDK----LTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRL 188

Query: 175 SDN 177
             N
Sbjct: 189 YQN 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 18/156 (11%)

Query: 34  LWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI----GKLKPIAASSNNFRGS 89
           L L+   L          L  L+ L L++ QL   + + +     +L  +  ++N    S
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA-S 97

Query: 90  IPQ-TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL-------VSEGIFSSTLGN 141
           +P     +   L  + L  N L+          T+LK L L       +  G F      
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK---- 153

Query: 142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           L  L++L LS N+L       F  L  L+   +  N
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQLTG 67
            I LS N+++        N+  + TL L  N+L  CIP      LK+L  L L    ++ 
Sbjct: 58  LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS- 115

Query: 68  RIPSEI----GKLKPIAASSN 84
            +P         L  +A  +N
Sbjct: 116 VVPEGAFNDLSALSHLAIGAN 136

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 48/175 (27%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP---FEIGNLKNLSTLCLEH 62
            I  I+L  N +    P      + +  + L  NQ++  +    F+   L++L++L L  
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQ--GLRSLNSLVLYG 89

Query: 63  KQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCT 122
            ++T  +P  +            F G          +L ++ L++N +   +        
Sbjct: 90  NKIT-ELPKSL------------FEGLF--------SLQLLLLNANKIN-CLR------- 120

Query: 123 ELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
                       F     +L  L  L L +NKL       F  L +++   ++ N
Sbjct: 121 ---------VDAFQ----DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 98  ANLAMIELSSNLLEGRVPKSLASCTELKFLNL-------VSEGIFSSTLGNLIVLESLDL 150
             +  I L  N ++   P + +   +L+ ++L       ++   F      L  L SL L
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVL 87

Query: 151 SNNKLSGQIPQQFGELTSLEFFDVSDN 177
             NK++      F  L SL+   ++ N
Sbjct: 88  YGNKITELPKSLFEGLFSLQLLLLNAN 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.87
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.43
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.93
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.72
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.26
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.32
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.16
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.56
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.47

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.1e-32  Score=209.71  Aligned_cols=207  Identities=31%  Similarity=0.550  Sum_probs=159.0

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcccc----CCc
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG----KLK   77 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~----~l~   77 (212)
                      +++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.    +|+
T Consensus        98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~  177 (313)
T 1ogq_A           98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred             hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence            3456666666666666656666666666666666666666666666666666777777777666655554432    456


Q ss_pred             eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC--cccCCcccccEEEccCCee
Q 042715           78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--STLGNLIVLESLDLSNNKL  155 (212)
Q Consensus        78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~L~~L~l~~n~i  155 (212)
                      +|++++|.+.+..|..+..+. |++|++++|.+.+..+..+..+++|+.|++++|.+..  ..+..+++|++|++++|.+
T Consensus       178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred             EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcc
Confidence            677777777766666666665 7777777777776677777788888888888887642  4467789999999999999


Q ss_pred             eeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCCCC
Q 042715          156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLP  209 (212)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~  209 (212)
                      .+.+|..+..+++|++|++++|++++.+|....+++++.+++.+||+.||.|++
T Consensus       257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~  310 (313)
T 1ogq_A          257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             EECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS
T ss_pred             cCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC
Confidence            989999999999999999999999999999889999999999999999998875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=1.6e-30  Score=218.97  Aligned_cols=208  Identities=41%  Similarity=0.631  Sum_probs=175.2

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCce
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKP   78 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~   78 (212)
                      +.+++|++|++++|.+.+..|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|..+   ++|++
T Consensus       463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  542 (768)
T 3rgz_A          463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW  542 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred             cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence            346677777777777777777777778888888888888777777777788888888888888877777554   45678


Q ss_pred             EEcccceeeeeCCC------------------------------------------------------------------
Q 042715           79 IAASSNNFRGSIPQ------------------------------------------------------------------   92 (212)
Q Consensus        79 l~l~~n~~~~~~~~------------------------------------------------------------------   92 (212)
                      |++++|.+++.+|.                                                                  
T Consensus       543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g  622 (768)
T 3rgz_A          543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG  622 (768)
T ss_dssp             EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred             EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence            88888877655443                                                                  


Q ss_pred             ----cccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCcccccEEEccCCeeeeecChhccC
Q 042715           93 ----TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSGQIPQQFGE  165 (212)
Q Consensus        93 ----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  165 (212)
                          .++.++++++|++++|.+++.+|..++.++.|+.|++++|.+   .+..++.++.|+.|+|++|++++.+|..+..
T Consensus       623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence                233456788999999999999999999999999999999987   4678899999999999999999999999999


Q ss_pred             CCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCCCC
Q 042715          166 LTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLP  209 (212)
Q Consensus       166 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~  209 (212)
                      +++|++|++++|++.|.+|....+..+....+.|||.+||.|++
T Consensus       703 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~  746 (768)
T 3rgz_A          703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP  746 (768)
T ss_dssp             CCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC
T ss_pred             CCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc
Confidence            99999999999999999999999999999999999999998875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=3.6e-29  Score=188.01  Aligned_cols=205  Identities=20%  Similarity=0.233  Sum_probs=181.0

Q ss_pred             ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccc-ceecCCc---cccCCceE
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQ-LTGRIPS---EIGKLKPI   79 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~---~l~~l~~l   79 (212)
                      .++|++|+++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+.   .+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4689999999999997777789999999999999999998889999999999999999997 6633343   45678999


Q ss_pred             EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeee
Q 042715           80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLS  156 (212)
Q Consensus        80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~  156 (212)
                      ++++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+..   ..+..+++|++|++++|.+.
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            999999987777888999999999999999996666678899999999999998743   45788999999999999999


Q ss_pred             eecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCCC
Q 042715          157 GQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      +..|..+..+++|++|++++|.+.+.++. ...+++++.+++.+||+.|+|++
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            88899999999999999999999876654 44789999999999999999975

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=194.67  Aligned_cols=206  Identities=18%  Similarity=0.178  Sum_probs=160.7

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCc
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLK   77 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~   77 (212)
                      |+++++|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+   ..+++|+
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  163 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR  163 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence            4567777777777777776666677777777777777777776566667777778888887777763322   2445677


Q ss_pred             eEEcccce-eeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCC
Q 042715           78 PIAASSNN-FRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNN  153 (212)
Q Consensus        78 ~l~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n  153 (212)
                      +|++++|. +....+..+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+.   +..+.++++|+.|++++|
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence            77777743 33333446777888888888888888 555 4778889999999999774   467888999999999999


Q ss_pred             eeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715          154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      ++.+..+..+..+++|++|+|++|++.+.++.. ..+++++.+++.+|||.|+|.+
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            999888889999999999999999999777664 4789999999999999999975

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=3.3e-28  Score=193.75  Aligned_cols=201  Identities=18%  Similarity=0.171  Sum_probs=135.0

Q ss_pred             eecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEcc
Q 042715            6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAAS   82 (212)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~   82 (212)
                      ++++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+.   .+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            455555555555544455555555555555555555555555555555555555555555422111   23344555555


Q ss_pred             cceeeeeCC-------------------------CcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--
Q 042715           83 SNNFRGSIP-------------------------QTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--  135 (212)
Q Consensus        83 ~n~~~~~~~-------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--  135 (212)
                      +|.+....+                         ..+..+++|++|++++|.+. ..| .+..+++|+.|++++|.+.  
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCccc
Confidence            554443222                         24555666777777777666 333 3666777888888888763  


Q ss_pred             -CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715          136 -SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       136 -~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                       +..+.++++|+.|++++|++.+..+..+..+++|++|++++|++.+.++.. ..+++++.+++.+||+.|+|.+
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence             356788899999999999998888888999999999999999998776654 3788999999999999999985

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=2.1e-28  Score=194.94  Aligned_cols=134  Identities=22%  Similarity=0.184  Sum_probs=117.4

Q ss_pred             CCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEcc
Q 042715           75 KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLS  151 (212)
Q Consensus        75 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~  151 (212)
                      +++++++++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.   +..+..+++|++|+++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            4566777777777667778888999999999999999777888999999999999999874   3567889999999999


Q ss_pred             CCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715          152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      +|++.+..|..+..+++|++|++++|++.+.++.. ..+++++.+++.+|++.|+||.
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            99999888999999999999999999999877654 4889999999999999999983

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.96  E-value=3.5e-28  Score=183.02  Aligned_cols=203  Identities=22%  Similarity=0.207  Sum_probs=176.7

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceEE
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPIA   80 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l~   80 (212)
                      ++++++++++++++.+. .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.++...+ ..+++|++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~   83 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD   83 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence            46788999999999998 6666553  689999999999998888899999999999999999874322 4677899999


Q ss_pred             cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeee
Q 042715           81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSG  157 (212)
Q Consensus        81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~  157 (212)
                      +++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..   ..+..+++|+.|++++|++.+
T Consensus        84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            9999998 677788889999999999999996666789999999999999998753   446788999999999999996


Q ss_pred             ecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCCC
Q 042715          158 QIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       158 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      ..+..+..+++|++|++++|++...++.......++.+.+.+|||.|+|.+
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence            666677889999999999999997777667888999999999999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=2.6e-28  Score=185.68  Aligned_cols=198  Identities=25%  Similarity=0.423  Sum_probs=97.1

Q ss_pred             ceeecEEEccC-CccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccCCceE
Q 042715            4 CFDIIYIKLSG-NQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGKLKPI   79 (212)
Q Consensus         4 l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~l   79 (212)
                      +++|++|++++ |.+.+.+|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..   +++|++|
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            44444444442 4444444444444444444444444444444444444444444444444444333322   2334444


Q ss_pred             EcccceeeeeCCCcccCCC-cccEEEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCcccccEEEccCCee
Q 042715           80 AASSNNFRGSIPQTCKNEA-NLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKL  155 (212)
Q Consensus        80 ~l~~n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i  155 (212)
                      ++++|.+.+.+|..+..++ +|++|++++|.+.+..|..+..+. |+.|++++|.+   .+..+..+++|+.|++++|.+
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            4444444444444444444 445555555544444444444443 55555555443   223445555566666666655


Q ss_pred             eeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCc
Q 042715          156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGL  203 (212)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~  203 (212)
                      .+.++. +..+++|++|++++|.+.+.+|.. ..+++++.+++++|...
T Consensus       234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            533333 455566666666666665544442 35566666666666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.7e-28  Score=182.81  Aligned_cols=206  Identities=18%  Similarity=0.181  Sum_probs=163.4

Q ss_pred             CCceeecEEEccCCccccc--cCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC----CccccC
Q 042715            2 SLCFDIIYIKLSGNQLTGP--IPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI----PSEIGK   75 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~   75 (212)
                      +++++|++|++++|.+...  .+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+....    ...+++
T Consensus        49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (306)
T 2z66_A           49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  127 (306)
T ss_dssp             TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred             hccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence            4566777777777766522  2445556677777777777766 34455778888888888888887432    234567


Q ss_pred             CceEEcccceeeeeCCCcccCCCcccEEEccCCcccc-cCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEcc
Q 042715           76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG-RVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLS  151 (212)
Q Consensus        76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~  151 (212)
                      |++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.   +..+..+++|++|+++
T Consensus       128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence            8999999999887777788888999999999998875 47788899999999999999874   3567889999999999


Q ss_pred             CCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-cc-ccccccccccCCCccCCCC
Q 042715          152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-QF-NTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~-~~l~~l~l~~n~~~~~~~~  208 (212)
                      +|.+.+..+..+..+++|++|++++|.+.+..+... .+ ++++.+++++|++.|+|++
T Consensus       208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            999987767788899999999999999998777543 55 4899999999999999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1.6e-27  Score=196.04  Aligned_cols=206  Identities=20%  Similarity=0.175  Sum_probs=181.7

Q ss_pred             CCceeecEEEccCCccccc--cCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccC
Q 042715            2 SLCFDIIYIKLSGNQLTGP--IPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGK   75 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~   75 (212)
                      +.+++|++|++++|.+.+.  .+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.+..+    ..+++
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  425 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK  425 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence            4678999999999998854  37888999999999999999884 55889999999999999999986544    34568


Q ss_pred             CceEEcccceeeeeCCCcccCCCcccEEEccCCcccc-cCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEcc
Q 042715           76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG-RVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLS  151 (212)
Q Consensus        76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~  151 (212)
                      |++|++++|.+....+..+..+++|++|++++|.+.+ ..|..++.+++|+.|++++|.+.   +..+.++++|++|+++
T Consensus       426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS  505 (606)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence            8999999999998888889999999999999999986 37888999999999999999874   4668899999999999


Q ss_pred             CCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccc-cccccccccCCCccCCCC
Q 042715          152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFN-TFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~l~~l~l~~n~~~~~~~~  208 (212)
                      +|++.+..|..+..+++|++|++++|++...++....++ +++.+++.+||+.|+|++
T Consensus       506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             SSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999998889999999999999999999986665555666 599999999999999986

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=9e-27  Score=173.68  Aligned_cols=199  Identities=23%  Similarity=0.271  Sum_probs=171.2

Q ss_pred             eecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEcc
Q 042715            6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAAS   82 (212)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l~   82 (212)
                      +.++++++++.+. .+|..+.  +++++|++++|.+....+.+|..+++|++|++++|.+....+   ..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            4678999999998 6776554  689999999999997777789999999999999999873322   345688999999


Q ss_pred             cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeec
Q 042715           83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQI  159 (212)
Q Consensus        83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~  159 (212)
                      +|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+..   ..+..+++|++|++++|.+.+..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            999986666677889999999999999997777778999999999999998754   34788999999999999999766


Q ss_pred             ChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCC
Q 042715          160 PQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       160 ~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      +..+..+++|++|++++|.+.+.++. ...+++++.+++.+||+.|+|.
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            77789999999999999999877665 3478899999999999999997

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=4.9e-27  Score=175.62  Aligned_cols=202  Identities=22%  Similarity=0.233  Sum_probs=172.1

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAA   81 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l   81 (212)
                      ++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+.   .+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            4699999999999966676899999999999999999988888999999999999999999855543   4567899999


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCCccccc-CCcccccCCcccEEEccCCCCCC---cccCCccccc----EEEccCC
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGR-VPKSLASCTELKFLNLVSEGIFS---STLGNLIVLE----SLDLSNN  153 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~----~L~l~~n  153 (212)
                      ++|.+....+..+..+++|++|++++|.+.+. .|..++.+++|+.|++++|.+..   ..+..+.+|+    ++++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99999876666788999999999999999853 58889999999999999998754   4455555665    8999999


Q ss_pred             eeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCC
Q 042715          154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      .+.+..+..+ ...+|++|++++|.+.+.++.. ..+++++++++.+||+.|+|+
T Consensus       188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            9985555544 4558999999999999777654 478999999999999999997

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=2.3e-27  Score=199.89  Aligned_cols=202  Identities=31%  Similarity=0.476  Sum_probs=121.1

Q ss_pred             ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCceEE
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIA   80 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~   80 (212)
                      +++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+   ++|++|+
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK  520 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence            3444445554444444445555555555555555555554555555555555555555555554444432   3455666


Q ss_pred             cccceeeeeCCCcccCCCcccEEEccCCcccccCCccc------------------------------------------
Q 042715           81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSL------------------------------------------  118 (212)
Q Consensus        81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------------------------  118 (212)
                      +++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+                                          
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR  600 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence            66666666666666666666666666665554444322                                          


Q ss_pred             ----------------------------ccCCcccEEEccCCCC---CCcccCCcccccEEEccCCeeeeecChhccCCC
Q 042715          119 ----------------------------ASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELT  167 (212)
Q Consensus       119 ----------------------------~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~  167 (212)
                                                  +.++.|+.|++++|.+   .+..++.++.|+.|++++|++++.+|..++.++
T Consensus       601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~  680 (768)
T 3rgz_A          601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR  680 (768)
T ss_dssp             GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence                                        2234556666666654   345566677777777777777777777777777


Q ss_pred             CccEEEeeCCeeecCCCCCc-ccccccccccccCCCccC
Q 042715          168 SLEFFDVSDNLVIGPIPQGK-QFNTFETSSFDGNPGLCG  205 (212)
Q Consensus       168 ~L~~L~l~~n~~~~~~~~~~-~~~~l~~l~l~~n~~~~~  205 (212)
                      +|++||+++|++++.+|... .++.++.+++++|+....
T Consensus       681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence            77777777777777766543 667777777777765543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.8e-28  Score=188.43  Aligned_cols=204  Identities=18%  Similarity=0.186  Sum_probs=111.9

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc-----cccCCc
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS-----EIGKLK   77 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----~l~~l~   77 (212)
                      ++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|.+. .++.     .+++|+
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred             cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence            3444444444444444333334444444444444444444322222444444444444444443 1211     233444


Q ss_pred             eEEcccce-eeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCC
Q 042715           78 PIAASSNN-FRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNN  153 (212)
Q Consensus        78 ~l~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n  153 (212)
                      +|++++|. +....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+..   ..+..+++|+.|++++|
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence            44554442 333333344445555555555555554444555555555555555554422   11223566777777777


Q ss_pred             eeeee-------------------------------cChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCC
Q 042715          154 KLSGQ-------------------------------IPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNP  201 (212)
Q Consensus       154 ~i~~~-------------------------------~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~  201 (212)
                      .+.+.                               +|..+..+++|++|++++|++...++.. ..+++++++++.+|+
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            66532                               3445678899999999999998655543 588999999999999


Q ss_pred             CccCCC
Q 042715          202 GLCGEP  207 (212)
Q Consensus       202 ~~~~~~  207 (212)
                      +.|+|+
T Consensus       313 ~~~~~~  318 (353)
T 2z80_A          313 WDCSCP  318 (353)
T ss_dssp             BCCCHH
T ss_pred             ccCcCC
Confidence            999986

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.3e-27  Score=181.52  Aligned_cols=197  Identities=20%  Similarity=0.284  Sum_probs=125.0

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCceEEc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIAA   81 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~l   81 (212)
                      +.++.|+++++.+. .+|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..+   ++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            45666777777666 55665666677777777777666 56666666677777777777666 555433   34566666


Q ss_pred             ccceeeeeCCCcccC---------CCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEc
Q 042715           82 SSNNFRGSIPQTCKN---------EANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDL  150 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l  150 (212)
                      ++|...+.+|..+..         +++|++|++++|.+. .+|..++.+++|++|++++|.+.  +..+..+++|++|++
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence            666655555554432         666677777666666 55666666666777777666653  244556666666777


Q ss_pred             cCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccC
Q 042715          151 SNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCG  205 (212)
Q Consensus       151 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~  205 (212)
                      ++|.+.+.+|..+..+++|++|++++|.+.+.+|.. ..+++++.+++.+|+....
T Consensus       237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            666666566666666666777777666666555543 3666666666666665443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=5e-27  Score=193.07  Aligned_cols=206  Identities=18%  Similarity=0.184  Sum_probs=153.1

Q ss_pred             CCceeecEEEccCCcccccc--CccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccC
Q 042715            2 SLCFDIIYIKLSGNQLTGPI--PYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGK   75 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~   75 (212)
                      +++++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+    ..+++
T Consensus       347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL  426 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred             hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence            45666777777776666433  5566777777777777777776667777777777777777777764433    23456


Q ss_pred             CceEEcccceeeeeCCCcccCCCcccEEEccCCccccc---CCcccccCCcccEEEccCCCCC---CcccCCcccccEEE
Q 042715           76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGR---VPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLD  149 (212)
Q Consensus        76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~  149 (212)
                      |++|++++|.+....+..+..+++|++|++++|.+.+.   .+..+..+++|+.|++++|.+.   +..+..+++|++|+
T Consensus       427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  506 (606)
T 3t6q_A          427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD  506 (606)
T ss_dssp             CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence            77778887777766666777778888888888877642   2245777788888888888763   35677888888888


Q ss_pred             ccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715          150 LSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       150 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      +++|++.+..|..+..++.| +|++++|.+.+.+|.. ..+++++.+++.+||+.|+|+.
T Consensus       507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            88888887778888888888 8888888888777664 3788999999999999999974

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=8.1e-27  Score=178.51  Aligned_cols=197  Identities=18%  Similarity=0.240  Sum_probs=174.9

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---------
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---------   72 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---------   72 (212)
                      .++++|++|++++|.+. .+|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+.+.+|..         
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            45789999999999999 88999999999999999999999 77888999999999999998877677754         


Q ss_pred             ---ccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCccccc
Q 042715           73 ---IGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLE  146 (212)
Q Consensus        73 ---l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~  146 (212)
                         +++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..++.+++|+.|++++|.+   .+..+..+++|+
T Consensus       179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence               668899999999998 78888999999999999999999 5777899999999999999876   346788999999


Q ss_pred             EEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-ccccccccccccCCC
Q 042715          147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-QFNTFETSSFDGNPG  202 (212)
Q Consensus       147 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~l~~l~l~~n~~  202 (212)
                      +|++++|.+.+.+|..+..+++|++|++++|.+.+.+|... .++.++.+.+..+..
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            99999998888999999999999999999999988888754 778888887766543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=7.5e-27  Score=187.07  Aligned_cols=208  Identities=22%  Similarity=0.223  Sum_probs=137.3

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cc----
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EI----   73 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l----   73 (212)
                      |+++++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+.   .+    
T Consensus        76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  155 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE  155 (477)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred             hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence            34566677777777766644444566666666666666666655565666666666666666655432222   22    


Q ss_pred             --------------------cCCceEEcccceeeeeCCCcccCCCcccEEE------------------------ccCCc
Q 042715           74 --------------------GKLKPIAASSNNFRGSIPQTCKNEANLAMIE------------------------LSSNL  109 (212)
Q Consensus        74 --------------------~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~------------------------l~~~~  109 (212)
                                          ++|++|++++|.+....+..+..+++|++|+                        +++|.
T Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN  235 (477)
T ss_dssp             EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred             EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence                                2334444444444433333344444444443                        34444


Q ss_pred             ccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC
Q 042715          110 LEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG  186 (212)
Q Consensus       110 ~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  186 (212)
                      +.+..+..+..+++|+.|++++|.+..   ..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+.+..+..
T Consensus       236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence            442222345667788888888887642   45778888999999999998888889999999999999999998766653


Q ss_pred             -cccccccccccccCCCccCCCC
Q 042715          187 -KQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       187 -~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                       ..+++++.+++.+||+.|+|.+
T Consensus       316 ~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          316 FHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             BSCGGGCCEEECCSSCEECSGGG
T ss_pred             cCCCcccCEEEccCCCccCccch
Confidence             4788999999999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=8.3e-27  Score=175.14  Aligned_cols=207  Identities=19%  Similarity=0.203  Sum_probs=176.9

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCe-eeecCCCCCCCCCCccEEEcccccceecCCc---cccCC
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQ-LTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKL   76 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l   76 (212)
                      |+++++|++|++++|.+.+..+..|..+++|++|++++|. +....+..+..+++|++|++++|.+....+.   .+++|
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            4678999999999999997778899999999999999997 8867788999999999999999999855444   45678


Q ss_pred             ceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCC
Q 042715           77 KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNN  153 (212)
Q Consensus        77 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n  153 (212)
                      ++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.   +..+..+++|++|++++|
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence            99999999998666667888999999999999999666667899999999999999874   467888999999999999


Q ss_pred             eeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCC
Q 042715          154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      .+.+..+..+..+++|++|++++|++....+......+++.+....+...|..|
T Consensus       212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             CCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred             cCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence            999666677999999999999999998655544444567777778888887665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=5.6e-27  Score=188.14  Aligned_cols=202  Identities=22%  Similarity=0.210  Sum_probs=165.4

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-------------
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-------------   69 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-------------   69 (212)
                      .+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..             
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N  109 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN  109 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence            45689999999999997777889999999999999999886554  888888998888888776321             


Q ss_pred             ------CccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccc-cCCcccEEEccCCCCCC-cccCC
Q 042715           70 ------PSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLA-SCTELKFLNLVSEGIFS-STLGN  141 (212)
Q Consensus        70 ------~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~-~~~~~  141 (212)
                            +..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+.. .....
T Consensus       110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~  189 (487)
T 3oja_A          110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV  189 (487)
T ss_dssp             CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred             cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc
Confidence                  22355677888888888766677778888999999999998876776665 78899999999998754 33446


Q ss_pred             cccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCC
Q 042715          142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       142 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      +++|+.|++++|.+++ +|..+..+++|+.|++++|.+.+.++....+++++.+++.+|++.|++.
T Consensus       190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence            8899999999999985 5555889999999999999999877666788999999999999998653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=4.4e-26  Score=189.81  Aligned_cols=206  Identities=21%  Similarity=0.222  Sum_probs=145.7

Q ss_pred             CceeecEEEccCCccccccC-ccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccce--ecCCc---cccCC
Q 042715            3 LCFDIIYIKLSGNQLTGPIP-YWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT--GRIPS---EIGKL   76 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~---~l~~l   76 (212)
                      ++++|++|++++|.+.+.+| ..|..+++|++|++++|.+....+..|..+++|+.|++++|.+.  +..|.   .+++|
T Consensus       403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L  482 (680)
T 1ziw_A          403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL  482 (680)
T ss_dssp             TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred             CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence            44555555555555543333 34555555666666655555555555666666666666666553  22333   34567


Q ss_pred             ceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCC--------cccccCCcccEEEccCCCCCC---cccCCcccc
Q 042715           77 KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP--------KSLASCTELKFLNLVSEGIFS---STLGNLIVL  145 (212)
Q Consensus        77 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L  145 (212)
                      ++|++++|.++...+..+..+++|++|++++|.+.+..+        ..+..+++|+.|++++|.+..   ..+.++++|
T Consensus       483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L  562 (680)
T 1ziw_A          483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL  562 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence            888888888876656667888888888888888774321        236777888889988887743   347788899


Q ss_pred             cEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc--ccccccccccccCCCccCCCC
Q 042715          146 ESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK--QFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       146 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~--~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      +.|++++|++++..+..+..+++|+.|++++|++.+.++...  .+++++.+++.+|||.|+|+.
T Consensus       563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999999999986666677888999999999999987766533  578999999999999999985

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=7.6e-27  Score=177.92  Aligned_cols=201  Identities=22%  Similarity=0.212  Sum_probs=159.6

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceec--------------
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR--------------   68 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--------------   68 (212)
                      .+++|++|++++|.+....|..|..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.              
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n  109 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN  109 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence            46789999999999887667788889999999999998875444  78888888888888877631              


Q ss_pred             -----CCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCccc-ccCCcccEEEccCCCCCC-cccCC
Q 042715           69 -----IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSL-ASCTELKFLNLVSEGIFS-STLGN  141 (212)
Q Consensus        69 -----~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~-~~~~~  141 (212)
                           .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.. .....
T Consensus       110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  189 (317)
T 3o53_A          110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV  189 (317)
T ss_dssp             CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred             ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc
Confidence                 12234566777777777776555677778889999999998886555555 467899999999998754 33345


Q ss_pred             cccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCC
Q 042715          142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGE  206 (212)
Q Consensus       142 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~  206 (212)
                      +++|++|++++|.+. .++..+..+++|++|++++|.+.+.++....+++++.+++++|++.|++
T Consensus       190 l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             CTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred             cccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence            889999999999998 4566688999999999999999876666668899999999999999764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=3.8e-26  Score=178.69  Aligned_cols=203  Identities=20%  Similarity=0.181  Sum_probs=131.8

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCce
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKP   78 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~   78 (212)
                      +++++|++|++++|.+.+..|..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+.   .+++|++
T Consensus        90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  169 (390)
T 3o6n_A           90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN  169 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCE
T ss_pred             cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCE
Confidence            4566666666666666655555566666666666666666644444456666666666666665533222   2234455


Q ss_pred             EEcccceeeeeC-----------------------------------------------------------CCcccCCCc
Q 042715           79 IAASSNNFRGSI-----------------------------------------------------------PQTCKNEAN   99 (212)
Q Consensus        79 l~l~~n~~~~~~-----------------------------------------------------------~~~~~~~~~   99 (212)
                      |++++|.+....                                                           ...+..+++
T Consensus       170 L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~  249 (390)
T 3o6n_A          170 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG  249 (390)
T ss_dssp             EECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTT
T ss_pred             EECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCC
Confidence            555555433210                                                           112344567


Q ss_pred             ccEEEccCCcccccCCcccccCCcccEEEccCCCCCC--cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCC
Q 042715          100 LAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN  177 (212)
Q Consensus       100 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  177 (212)
                      |++|++++|.+.+..|..+..+++|+.|++++|.+..  ..+..+++|++|++++|++. .+|..+..+++|++|++++|
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred             ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCC
Confidence            7777777777776666777777778888887777643  33456778888888888887 56666777788888888888


Q ss_pred             eeecCCCCCcccccccccccccCCCccCCC
Q 042715          178 LVIGPIPQGKQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       178 ~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      .+....  ...++.++.+++.+|++.|++.
T Consensus       329 ~i~~~~--~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          329 SIVTLK--LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             CCCCCC--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             ccceeC--chhhccCCEEEcCCCCccchhH
Confidence            887553  4577888999999999888653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=4.3e-26  Score=187.30  Aligned_cols=202  Identities=20%  Similarity=0.186  Sum_probs=133.9

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCce
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKP   78 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~   78 (212)
                      +++++|++|++++|.+.+..|..|..+++|++|++++|.+...++..|..+++|++|++++|.+.+..+.   .+++|++
T Consensus        96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  175 (597)
T 3oja_B           96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN  175 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence            4556666666666666655555556666666666666666644444455666666666666655533332   2234455


Q ss_pred             EEcccceeeee-----------------------------------------------------------CCCcccCCCc
Q 042715           79 IAASSNNFRGS-----------------------------------------------------------IPQTCKNEAN   99 (212)
Q Consensus        79 l~l~~n~~~~~-----------------------------------------------------------~~~~~~~~~~   99 (212)
                      |++++|.+...                                                           -+..+..+++
T Consensus       176 L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~  255 (597)
T 3oja_B          176 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG  255 (597)
T ss_dssp             EECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTT
T ss_pred             EECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCC
Confidence            55555443321                                                           0123455677


Q ss_pred             ccEEEccCCcccccCCcccccCCcccEEEccCCCCCC--cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCC
Q 042715          100 LAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN  177 (212)
Q Consensus       100 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  177 (212)
                      |+.|++++|.+.+..|..++.+++|+.|++++|.+..  ..+..+++|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus       256 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN  334 (597)
T ss_dssp             CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred             CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence            7778888887776667777788888888888887643  44456778888888888887 56767777888888888888


Q ss_pred             eeecCCCCCcccccccccccccCCCccCC
Q 042715          178 LVIGPIPQGKQFNTFETSSFDGNPGLCGE  206 (212)
Q Consensus       178 ~~~~~~~~~~~~~~l~~l~l~~n~~~~~~  206 (212)
                      .+.+..  ...++.++.+++.+||+.|+|
T Consensus       335 ~l~~~~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          335 SIVTLK--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence            887553  446788999999999998865

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.8e-25  Score=176.13  Aligned_cols=196  Identities=18%  Similarity=0.127  Sum_probs=153.1

Q ss_pred             ecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEccc
Q 042715            7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAASS   83 (212)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~~   83 (212)
                      ...++.++..+. .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.+....+.   .+++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            457788887877 6676554  6899999999999988899999999999999999999855444   456789999999


Q ss_pred             ceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccC-------------------------CCCCC-c
Q 042715           84 NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS-------------------------EGIFS-S  137 (212)
Q Consensus        84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-------------------------n~~~~-~  137 (212)
                      |.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++                         |.+.. .
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  212 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP  212 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence            999866666788899999999999988855444555555555555554                         44322 3


Q ss_pred             ccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccC
Q 042715          138 TLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCG  205 (212)
Q Consensus       138 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~  205 (212)
                      .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+.. ..+++++.+++.+|....-
T Consensus       213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  281 (452)
T 3zyi_A          213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL  281 (452)
T ss_dssp             CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence            3556677888888888888777888888999999999999888766553 4788999999999976543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=5.2e-25  Score=168.62  Aligned_cols=199  Identities=19%  Similarity=0.227  Sum_probs=136.3

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc-ccCCceEEccc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE-IGKLKPIAASS   83 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~l~l~~   83 (212)
                      +++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|.. +++|++|++++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~  130 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHE  130 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCS
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCC
Confidence            56788888888888666667888888999999888888777888888888989988888877 44433 35677777777


Q ss_pred             ceeeeeCCCcccCCCcccEEEccCCcccc--cCCcccccCCcccEEEccC---------------------CCCC---Cc
Q 042715           84 NNFRGSIPQTCKNEANLAMIELSSNLLEG--RVPKSLASCTELKFLNLVS---------------------EGIF---SS  137 (212)
Q Consensus        84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~---------------------n~~~---~~  137 (212)
                      |.+....+..+..+++|++|++++|.+..  ..+..+..+++|+.|++++                     |.+.   +.
T Consensus       131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~  210 (330)
T 1xku_A          131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA  210 (330)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG
T ss_pred             CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH
Confidence            77664444445556666666666665532  3344455555555555544                     4432   24


Q ss_pred             ccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715          138 TLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC  204 (212)
Q Consensus       138 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~  204 (212)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...+.....+++++++++.+|+...
T Consensus       211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence            4566677777777777777666666777777777777777777544445567777777777777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=3.2e-25  Score=176.58  Aligned_cols=104  Identities=23%  Similarity=0.194  Sum_probs=73.2

Q ss_pred             EEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCee
Q 042715          103 IELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV  179 (212)
Q Consensus       103 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~  179 (212)
                      |++++|.+.+..+..++.+++|+.|++++|.+.   +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  359 (455)
T 3v47_A          280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI  359 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred             EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence            333333333334555666677777777777663   34667778888888888888766677788888888888888888


Q ss_pred             ecCCCC-CcccccccccccccCCCccCC
Q 042715          180 IGPIPQ-GKQFNTFETSSFDGNPGLCGE  206 (212)
Q Consensus       180 ~~~~~~-~~~~~~l~~l~l~~n~~~~~~  206 (212)
                      .+..|. ...+++++++++++|....-+
T Consensus       360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          360 RALGDQSFLGLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccChhhccccccccEEECCCCccccCC
Confidence            777554 347788888888888766533

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=4.3e-25  Score=172.72  Aligned_cols=197  Identities=24%  Similarity=0.269  Sum_probs=127.5

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc----cccCCce
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS----EIGKLKP   78 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~   78 (212)
                      ++++|++|+++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++.    .+++|++
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT  145 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcE
Confidence            4567777777777777555567777777777777777777666666777777777777777776 3332    3456777


Q ss_pred             EEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCC------------------------------------
Q 042715           79 IAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCT------------------------------------  122 (212)
Q Consensus        79 l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------------------------------  122 (212)
                      |++++|.+....+..+..+++|++|++++|.+.+..   ++.++                                    
T Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~  222 (390)
T 3o6n_A          146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  222 (390)
T ss_dssp             EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred             EECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence            777777777655566777777777777777665321   11112                                    


Q ss_pred             ----cccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCccccccccccc
Q 042715          123 ----ELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSF  197 (212)
Q Consensus       123 ----~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l  197 (212)
                          +|+.|++++|.+.. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.......+++++++++
T Consensus       223 ~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L  302 (390)
T 3o6n_A          223 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL  302 (390)
T ss_dssp             CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEEC
T ss_pred             cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEEC
Confidence                22333333333221 2344566777777777777766677777777777777777777655444445666777777


Q ss_pred             ccCCCc
Q 042715          198 DGNPGL  203 (212)
Q Consensus       198 ~~n~~~  203 (212)
                      ++|...
T Consensus       303 ~~n~l~  308 (390)
T 3o6n_A          303 SHNHLL  308 (390)
T ss_dssp             CSSCCC
T ss_pred             CCCcce
Confidence            776543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=172.28  Aligned_cols=202  Identities=21%  Similarity=0.177  Sum_probs=174.9

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAA   81 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l   81 (212)
                      ++++.|++++|.+....+..|..+++|++|++++|.+....+.+|..+++|++|++++|.++...+   ..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            568999999999997778899999999999999999998888899999999999999999883332   34567899999


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCC-cccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSN-LLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI  159 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~  159 (212)
                      ++|.+....+..+..+++|++|++++| .+....+..+..+++|+.|++++|.+.. ..+..+++|+.|++++|.+.+..
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~  223 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR  223 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccC
Confidence            999999777778899999999999985 4554445578899999999999998854 45778899999999999999888


Q ss_pred             ChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCC
Q 042715          160 PQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGE  206 (212)
Q Consensus       160 ~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~  206 (212)
                      +..+..+++|++|++++|.+.+..+.. ..+++++.|++++|....-.
T Consensus       224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence            999999999999999999998876653 47899999999999876443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=3.4e-24  Score=164.07  Aligned_cols=198  Identities=23%  Similarity=0.263  Sum_probs=148.4

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----------
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----------   70 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----------   70 (212)
                      |+++++|++|++++|.+.+..|..|..+++|++|++++|.++. .|..+.  ++|++|++++|.+....+          
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~  148 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI  148 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence            4678899999999999987778889999999999999998873 443322  455555555555442211          


Q ss_pred             -------------------ccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccC
Q 042715           71 -------------------SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS  131 (212)
Q Consensus        71 -------------------~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  131 (212)
                                         ..+++|++|++++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus       149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             EEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence                               12334555555555554 2333222  5778888888888766678889999999999999


Q ss_pred             CCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-------ccccccccccccCC
Q 042715          132 EGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-------QFNTFETSSFDGNP  201 (212)
Q Consensus       132 n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-------~~~~l~~l~l~~n~  201 (212)
                      |.+..   ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+...       ....++.+++.+||
T Consensus       226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence            98743   46788999999999999998 788889999999999999999987655432       34678899999999


Q ss_pred             CccC
Q 042715          202 GLCG  205 (212)
Q Consensus       202 ~~~~  205 (212)
                      +.+.
T Consensus       305 ~~~~  308 (330)
T 1xku_A          305 VQYW  308 (330)
T ss_dssp             SCGG
T ss_pred             cccc
Confidence            8764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=7.6e-25  Score=179.93  Aligned_cols=197  Identities=24%  Similarity=0.263  Sum_probs=134.9

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc----cccCCce
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS----EIGKLKP   78 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~   78 (212)
                      ++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .+|.    .+++|++
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~  151 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT  151 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCE
Confidence            4677888888888887666667888888888888888888777777788888888888888777 3332    3456788


Q ss_pred             EEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCc-----------------------------------
Q 042715           79 IAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTE-----------------------------------  123 (212)
Q Consensus        79 l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----------------------------------  123 (212)
                      |++++|.+....+..+..+++|++|++++|.+.+..   ++.+++                                   
T Consensus       152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~  228 (597)
T 3oja_B          152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  228 (597)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred             EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence            888888887666667777788888888888776321   111222                                   


Q ss_pred             -----ccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCccccccccccc
Q 042715          124 -----LKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSF  197 (212)
Q Consensus       124 -----L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l  197 (212)
                           |+.|++++|.+.. ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+.....+++++.|++
T Consensus       229 ~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L  308 (597)
T 3oja_B          229 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL  308 (597)
T ss_dssp             SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEEC
T ss_pred             ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEEC
Confidence                 3333333333321 3345667777777777777766677777777777777777777665544445667777777


Q ss_pred             ccCCCc
Q 042715          198 DGNPGL  203 (212)
Q Consensus       198 ~~n~~~  203 (212)
                      ++|...
T Consensus       309 s~N~l~  314 (597)
T 3oja_B          309 SHNHLL  314 (597)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            777654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=9.6e-25  Score=167.27  Aligned_cols=197  Identities=22%  Similarity=0.238  Sum_probs=117.8

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc-ccCCceEEccc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE-IGKLKPIAASS   83 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~l~l~~   83 (212)
                      +++++|++++|.+....+..|..+++|++|++++|.+++..+.+|..+++|++|++++|.+. .+|.. +++|++|++++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~  132 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHD  132 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCS
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECCC
Confidence            45677777777776555666777777777777777777666667777777777777777666 34332 24556666666


Q ss_pred             ceeeeeCCCcccCCCcccEEEccCCcc----------------------------------------------cccCCcc
Q 042715           84 NNFRGSIPQTCKNEANLAMIELSSNLL----------------------------------------------EGRVPKS  117 (212)
Q Consensus        84 n~~~~~~~~~~~~~~~L~~L~l~~~~~----------------------------------------------~~~~~~~  117 (212)
                      |.+....+..+..+++|++|++++|.+                                              .+..+..
T Consensus       133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~  212 (332)
T 2ft3_A          133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED  212 (332)
T ss_dssp             SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTS
T ss_pred             CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHH
Confidence            655533333344455555555555544                                              3222334


Q ss_pred             cccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-------
Q 042715          118 LASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-------  187 (212)
Q Consensus       118 ~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-------  187 (212)
                      +..+++|+.|++++|.+..   ..+..+++|++|++++|++. .+|..+..+++|++|++++|++.+..+...       
T Consensus       213 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  291 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV  291 (332)
T ss_dssp             STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred             hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence            4455555555555555432   24556666667777777666 566666666777777777776665443321       


Q ss_pred             ccccccccccccCCCc
Q 042715          188 QFNTFETSSFDGNPGL  203 (212)
Q Consensus       188 ~~~~l~~l~l~~n~~~  203 (212)
                      ....++.+++.+||+.
T Consensus       292 ~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          292 KRAYYNGISLFNNPVP  307 (332)
T ss_dssp             SSCCBSEEECCSSSSC
T ss_pred             ccccccceEeecCccc
Confidence            1345666777777765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=7.5e-25  Score=178.83  Aligned_cols=203  Identities=16%  Similarity=0.154  Sum_probs=162.9

Q ss_pred             ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecC--CCCCCCCCCccEEEcccccceecC--CccccCCceE
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCI--PFEIGNLKNLSTLCLEHKQLTGRI--PSEIGKLKPI   79 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~l   79 (212)
                      +++|++|+++++.+....+.  ..+++|++|++++|.+....  +..+..+++|++|++++|.+....  ...+++|++|
T Consensus       324 l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L  401 (570)
T 2z63_A          324 LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL  401 (570)
T ss_dssp             CSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred             ccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEE
Confidence            34455555555554433322  56778888888888776433  456677888888888888776322  2345678999


Q ss_pred             EcccceeeeeCC-CcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC----CcccCCcccccEEEccCCe
Q 042715           80 AASSNNFRGSIP-QTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF----SSTLGNLIVLESLDLSNNK  154 (212)
Q Consensus        80 ~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~L~~L~l~~n~  154 (212)
                      ++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.    +..+..+++|++|++++|+
T Consensus       402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  481 (570)
T 2z63_A          402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  481 (570)
T ss_dssp             ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence            999999886555 46788899999999999998788888999999999999999763    4678899999999999999


Q ss_pred             eeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715          155 LSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       155 i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      +.+..|..+..+++|++|++++|++.+.++.. ..+++++.+++.+|++.|+|+.
T Consensus       482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99888999999999999999999999887764 4889999999999999999985

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=1.7e-24  Score=173.40  Aligned_cols=202  Identities=20%  Similarity=0.166  Sum_probs=115.7

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCce
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKP   78 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~   78 (212)
                      +++++|++|++++|.+.+..|..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+.   .+++|++
T Consensus        53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  132 (477)
T 2id5_A           53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS  132 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence            4566666666666666655566666666666666666666655555566666666666666666543332   3345666


Q ss_pred             EEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC-----------------------
Q 042715           79 IAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF-----------------------  135 (212)
Q Consensus        79 l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-----------------------  135 (212)
                      |++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.                       
T Consensus       133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred             EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence            777666666555555666666666666666555332223333444444444333221                       


Q ss_pred             -------------------------C---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-
Q 042715          136 -------------------------S---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-  186 (212)
Q Consensus       136 -------------------------~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-  186 (212)
                                               .   ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. 
T Consensus       213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (477)
T 2id5_A          213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF  292 (477)
T ss_dssp             CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred             ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence                                     0   12334555666666666665555555666666666666666666554433 


Q ss_pred             cccccccccccccCCCc
Q 042715          187 KQFNTFETSSFDGNPGL  203 (212)
Q Consensus       187 ~~~~~l~~l~l~~n~~~  203 (212)
                      ..+++++.+++.+|...
T Consensus       293 ~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          293 RGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             TTCTTCCEEECCSSCCS
T ss_pred             cCcccCCEEECCCCcCc
Confidence            25666777777776544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=1.7e-24  Score=164.06  Aligned_cols=204  Identities=21%  Similarity=0.266  Sum_probs=170.6

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCC-CCCCCCCCccEEEcccccceecCCc---cccCCce
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP-FEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKP   78 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~   78 (212)
                      .+++|++|++++|.+. .+|..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+.   .+++|++
T Consensus        76 ~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             SCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             cccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence            4789999999999998 677779999999999999999996554 5789999999999999999865554   4567899


Q ss_pred             EEcccceeee-eCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCe
Q 042715           79 IAASSNNFRG-SIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNK  154 (212)
Q Consensus        79 l~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~  154 (212)
                      |++++|.+.. ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..   ..+..+++|++|++++|.
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            9999999986 577888999999999999999997778889999999999999998754   467789999999999999


Q ss_pred             eeeecChhccCCC-CccEEEeeCCeeecCCCCC---cccccccccccccCCCccCCC
Q 042715          155 LSGQIPQQFGELT-SLEFFDVSDNLVIGPIPQG---KQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       155 i~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~---~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      +.+..+..+..++ +|++|++++|++....+..   ..+...+.+....+...|..|
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p  291 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP  291 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred             CcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence            9988888888885 9999999999998654321   123334455666677777655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=5.5e-25  Score=187.10  Aligned_cols=204  Identities=19%  Similarity=0.241  Sum_probs=114.1

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCce
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKP   78 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~   78 (212)
                      +.+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+.   .+++|++
T Consensus       287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  366 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT  366 (844)
T ss_dssp             SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred             hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence            4456666666666666655555566666666666666666555555566666666666666655422221   2334445


Q ss_pred             EEcccceeee------------------eCCC----------------------cccCCCcccEEEccCCcccccC----
Q 042715           79 IAASSNNFRG------------------SIPQ----------------------TCKNEANLAMIELSSNLLEGRV----  114 (212)
Q Consensus        79 l~l~~n~~~~------------------~~~~----------------------~~~~~~~L~~L~l~~~~~~~~~----  114 (212)
                      |++++|.+..                  .++.                      .+..+++|++|++++|.+.+..    
T Consensus       367 L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  446 (844)
T 3j0a_A          367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT  446 (844)
T ss_dssp             EEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred             EECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence            5554444321                  1110                      0124566677777777665321    


Q ss_pred             --------------------------CcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccC
Q 042715          115 --------------------------PKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGE  165 (212)
Q Consensus       115 --------------------------~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  165 (212)
                                                +..+..+++|+.|++++|.+.   +..+.++++|+.|+|++|++++..+..+. 
T Consensus       447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-  525 (844)
T 3j0a_A          447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-  525 (844)
T ss_dssp             SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-
T ss_pred             cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-
Confidence                                      122344445555555555332   23345556666666666666543333332 


Q ss_pred             CCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCCCC
Q 042715          166 LTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLP  209 (212)
Q Consensus       166 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~  209 (212)
                       ++|+.|++++|++.+.+|.  .+.+++.+++.+||+.|+|++.
T Consensus       526 -~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          526 -ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             -SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSCC
T ss_pred             -ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCcccccccH
Confidence             5566666666666665554  3568899999999999999864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.2e-25  Score=171.01  Aligned_cols=197  Identities=20%  Similarity=0.179  Sum_probs=156.0

Q ss_pred             CceeecEEEccCCccccccCccc--cccCCCceEEccCCeeeecCCCCCCCC-----CCccEEEcccccceecCCcc---
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWL--ENLENISTLWLEKNQLTGCIPFEIGNL-----KNLSTLCLEHKQLTGRIPSE---   72 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~---   72 (212)
                      ++++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..+..   
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            57889999999999987788765  8899999999999998865 6666666     89999999999988554443   


Q ss_pred             ccCCceEEcccceeeee--CCCcc--cCCCcccEEEccCCcccc---cCCcccccCCcccEEEccCCCCCC----cccCC
Q 042715           73 IGKLKPIAASSNNFRGS--IPQTC--KNEANLAMIELSSNLLEG---RVPKSLASCTELKFLNLVSEGIFS----STLGN  141 (212)
Q Consensus        73 l~~l~~l~l~~n~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~  141 (212)
                      +++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+.+   .....+..+++|+.|++++|.+..    ..+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            55779999999986543  22233  778899999999998872   122334567899999999998754    34556


Q ss_pred             cccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715          142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC  204 (212)
Q Consensus       142 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~  204 (212)
                      +++|++|++++|.++ .+|..+.  ++|++|++++|++.+. |....+++++++++.+|++..
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence            789999999999998 7777665  8899999999999877 557788999999999998753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=4.1e-25  Score=182.62  Aligned_cols=181  Identities=20%  Similarity=0.284  Sum_probs=132.7

Q ss_pred             CCCceeecEEEccCCccccc-----------------cCcccc--ccCCCceEEccCCeeeecCCCCCCCCCCccEEEcc
Q 042715            1 ISLCFDIIYIKLSGNQLTGP-----------------IPYWLE--NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLE   61 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   61 (212)
                      |+++++|++|++++|.+.+.                 +|+.+.  .+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            35688999999999998864                 888888  89999999999999888888899999999999999


Q ss_pred             ccc-cee-cCCccc---------cCCceEEcccceeeeeCCC--cccCCCcccEEEccCCcccccCCcccccCCcccEEE
Q 042715           62 HKQ-LTG-RIPSEI---------GKLKPIAASSNNFRGSIPQ--TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN  128 (212)
Q Consensus        62 ~~~-~~~-~~~~~l---------~~l~~l~l~~n~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  128 (212)
                      +|. +++ .+|..+         ++|++|++++|.++ .+|.  .++.+++|++|++++|.+.+.+| .++.+++|+.|+
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~  359 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN  359 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence            997 775 555433         67788888888877 6666  67777778888888877776666 666777777777


Q ss_pred             ccCCCC--CCcccCCccc-ccEEEccCCeeeeecChhccCCC--CccEEEeeCCeeecCCC
Q 042715          129 LVSEGI--FSSTLGNLIV-LESLDLSNNKLSGQIPQQFGELT--SLEFFDVSDNLVIGPIP  184 (212)
Q Consensus       129 l~~n~~--~~~~~~~~~~-L~~L~l~~n~i~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~  184 (212)
                      +++|.+  .+..+..+++ |++|++++|.+. .+|..+...+  +|++|++++|.+.+.+|
T Consensus       360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             CCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             CCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence            777755  3344556666 666666666666 5555554433  56666666666555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=1.5e-24  Score=161.86  Aligned_cols=179  Identities=22%  Similarity=0.283  Sum_probs=104.1

Q ss_pred             cccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEEcccceeeeeCCCcccCCCcccEE
Q 042715           26 ENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMI  103 (212)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L  103 (212)
                      ..+++|+.|++.++.+.. . ..+..+++|++|++++|.+.+ ++  ..+++|++|++++|.+....+..+..+++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            445555666665555541 1 234555556666666555542 21  223445556666665554444445566666666


Q ss_pred             EccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee
Q 042715          104 ELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       104 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      ++++|.+.+..+..++.+++|+.|++++|.+..   ..+..+++|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            666666664444455666666666666665532   22456666666666666666555555566666677777766666


Q ss_pred             cCCCCC-cccccccccccccCCCccCCC
Q 042715          181 GPIPQG-KQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       181 ~~~~~~-~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      +.++.. ..+++++.+++.+|++.|.|+
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            655542 356666666777777666665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=1.2e-23  Score=155.16  Aligned_cols=175  Identities=20%  Similarity=0.203  Sum_probs=122.5

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAA   81 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l   81 (212)
                      ...++++++++.+. .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.+.+..+.   .+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            34678999998888 6666554  6899999999999887888889999999999999988744432   3445677777


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeee
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQ  158 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~  158 (212)
                      ++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..   ..+..+++|++|++++|++.+.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            7777765555556666777777777777764444455666677777777766532   2455666677777777776655


Q ss_pred             cChhccCCCCccEEEeeCCeeecC
Q 042715          159 IPQQFGELTSLEFFDVSDNLVIGP  182 (212)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~n~~~~~  182 (212)
                      .+..+..+++|++|++++|++...
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            555666666777777777766554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=8.4e-24  Score=173.93  Aligned_cols=201  Identities=20%  Similarity=0.172  Sum_probs=106.1

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecC-CCCCCCCCCccEEEcccccceecC--C---ccccC
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCI-PFEIGNLKNLSTLCLEHKQLTGRI--P---SEIGK   75 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~--~---~~l~~   75 (212)
                      +++++|++|++++|.+....|..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..  +   ..+++
T Consensus       298 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  377 (606)
T 3t6q_A          298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH  377 (606)
T ss_dssp             CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred             cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence            45666777777777666555555666666666666666554222 223555555555555555544221  1   22334


Q ss_pred             CceEEcccceeeeeCCCcc-------------------------cCCCcccEEEccCCcccccCCcccccCCcccEEEcc
Q 042715           76 LKPIAASSNNFRGSIPQTC-------------------------KNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLV  130 (212)
Q Consensus        76 l~~l~l~~n~~~~~~~~~~-------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  130 (212)
                      |++|++++|.+....+..+                         ..+++|++|++++|.+.+..+..++.+++|+.|+++
T Consensus       378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  457 (606)
T 3t6q_A          378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ  457 (606)
T ss_dssp             CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence            4445555444444434444                         444555555555555544444445555555555555


Q ss_pred             CCCCCC------cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCc
Q 042715          131 SEGIFS------STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGL  203 (212)
Q Consensus       131 ~n~~~~------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~  203 (212)
                      +|.+..      ..+..+++|++|++++|.+.+..|.++..+++|++|++++|++.+..|.. ..++.+ .+++.+|...
T Consensus       458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~  536 (606)
T 3t6q_A          458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS  536 (606)
T ss_dssp             TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred             CCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence            554422      23445555666666666665555555666666666666666665544432 244455 5555665544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.5e-23  Score=156.18  Aligned_cols=179  Identities=22%  Similarity=0.258  Sum_probs=154.8

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAA   81 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l   81 (212)
                      +++++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+   ..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            469999999999996666789999999999999999997777778999999999999999984333   34568899999


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeee
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQ  158 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~  158 (212)
                      ++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..   ..+..+++|++|++++|.+.+.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            9999987777778899999999999999996666668899999999999998753   4577899999999999999966


Q ss_pred             cChhccCCCCccEEEeeCCeeecCC
Q 042715          159 IPQQFGELTSLEFFDVSDNLVIGPI  183 (212)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~n~~~~~~  183 (212)
                      .+..+..+++|+.|++++|++...-
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CHHHhccccCCCEEEecCCCeeCCC
Confidence            6667889999999999999986443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=2.8e-24  Score=175.45  Aligned_cols=158  Identities=20%  Similarity=0.280  Sum_probs=127.6

Q ss_pred             CCCCCccEEEcccccceecCCcc---ccCCceEEcccceeee--eCCCcccCCCcccEEEccCCcccccCC-cccccCCc
Q 042715           50 GNLKNLSTLCLEHKQLTGRIPSE---IGKLKPIAASSNNFRG--SIPQTCKNEANLAMIELSSNLLEGRVP-KSLASCTE  123 (212)
Q Consensus        50 ~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~l~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~  123 (212)
                      ..+++|++|++++|.+.+..+..   +++|++|++++|.+..  ..+..+..+++|++|++++|.+.+..| ..+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            56788888888888887655543   4567888998888875  223457788889999999998886344 45778889


Q ss_pred             ccEEEccCCCCCCcccCCc-ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCC
Q 042715          124 LKFLNLVSEGIFSSTLGNL-IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNP  201 (212)
Q Consensus       124 L~~L~l~~n~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~  201 (212)
                      |+.|++++|.+....+..+ ++|+.|++++|+++ .+|..+..+++|++|++++|++...++. ...+++++.+++.+||
T Consensus       430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence            9999999998866555555 68999999999998 6777777999999999999999966655 5688999999999999


Q ss_pred             CccCCCC
Q 042715          202 GLCGEPL  208 (212)
Q Consensus       202 ~~~~~~~  208 (212)
                      +.|+|++
T Consensus       509 ~~c~c~~  515 (562)
T 3a79_B          509 WDCTCPG  515 (562)
T ss_dssp             BCCCHHH
T ss_pred             cCCCcch
Confidence            9999974

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=1e-23  Score=161.62  Aligned_cols=201  Identities=15%  Similarity=0.127  Sum_probs=143.7

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeee---------------------cCCCCCCCCCCccEEE
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTG---------------------CIPFEIGNLKNLSTLC   59 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------------~~~~~~~~l~~L~~L~   59 (212)
                      |+++++|++|++++|.+.+..|..|..+++|++|++++|.+..                     ..+..+..+++|+.|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE  153 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence            3566777777777777776666677777777777777776552                     2223355667777777


Q ss_pred             ccccccee--cCCccc-----------------------cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccC
Q 042715           60 LEHKQLTG--RIPSEI-----------------------GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRV  114 (212)
Q Consensus        60 l~~~~~~~--~~~~~l-----------------------~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  114 (212)
                      +++|.+..  ..+..+                       ++|++|++++|.+....+..+..+++|++|++++|.+.+..
T Consensus       154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred             CCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence            77766541  111111                       24556666666666555567888899999999999999777


Q ss_pred             CcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecChhccC------CCCccEEEeeCCeee--cCCC
Q 042715          115 PKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIPQQFGE------LTSLEFFDVSDNLVI--GPIP  184 (212)
Q Consensus       115 ~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------~~~L~~L~l~~n~~~--~~~~  184 (212)
                      +..+..+++|+.|++++|.+.  +..+..+++|++|++++|.+++..+..+..      .+.++.|++++|++.  ...+
T Consensus       234 ~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          234 NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence            778999999999999999874  456788999999999999999666666654      367899999999986  3343


Q ss_pred             C-CcccccccccccccCC
Q 042715          185 Q-GKQFNTFETSSFDGNP  201 (212)
Q Consensus       185 ~-~~~~~~l~~l~l~~n~  201 (212)
                      . ...++.++.+++++|.
T Consensus       314 ~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGTTBCCSTTEEC----
T ss_pred             ccccccchhhhhhccccc
Confidence            3 3377889999998874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=4.3e-24  Score=176.56  Aligned_cols=57  Identities=26%  Similarity=0.239  Sum_probs=30.0

Q ss_pred             cccEEEccCCeeeeecChhcc--CCCCccEEEeeCCeeecCCCCCcccccccccccccCC
Q 042715          144 VLESLDLSNNKLSGQIPQQFG--ELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNP  201 (212)
Q Consensus       144 ~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~  201 (212)
                      +|+.|++++|+++ .+|..+.  .+++|++|++++|++.+.+.....+++++.+++++|.
T Consensus       489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~  547 (636)
T 4eco_A          489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR  547 (636)
T ss_dssp             GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCB
T ss_pred             CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCc
Confidence            5555555555555 4555444  5555555555555555533333355555555554444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=1.1e-23  Score=154.19  Aligned_cols=192  Identities=18%  Similarity=0.211  Sum_probs=159.7

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCe-eeecCCCCCCCCCCccEEEccc-ccceecCCc---cccCCceE
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQ-LTGCIPFEIGNLKNLSTLCLEH-KQLTGRIPS---EIGKLKPI   79 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~---~l~~l~~l   79 (212)
                      +++++|++++|.+.+..+..|..+++|++|++++|. ++...+.+|..+++|++|++++ |.+....+.   .+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            378999999999996667689999999999999997 8877777899999999999998 888744333   45678999


Q ss_pred             EcccceeeeeCCCcccCCCccc---EEEccCC-cccccCCcccccCCccc-EEEccCCCCCC---cccCCcccccEEEcc
Q 042715           80 AASSNNFRGSIPQTCKNEANLA---MIELSSN-LLEGRVPKSLASCTELK-FLNLVSEGIFS---STLGNLIVLESLDLS  151 (212)
Q Consensus        80 ~l~~n~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~n~~~~---~~~~~~~~L~~L~l~  151 (212)
                      ++++|.+.. +|. +..+++++   +|++++| .+.+..+..+..+++|+ .|++++|.+..   ..+.. ++|++|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            999999885 554 77778887   9999999 88866666788999999 99999998743   23334 789999999


Q ss_pred             CCe-eeeecChhccCC-CCccEEEeeCCeeecCCCCCcccccccccccccCC
Q 042715          152 NNK-LSGQIPQQFGEL-TSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNP  201 (212)
Q Consensus       152 ~n~-i~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~  201 (212)
                      +|. +.+..+..+..+ ++|+.|++++|++.+.++.  .+++++.+.+.++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            995 986667888899 9999999999999865554  78899999988775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=4.3e-24  Score=172.76  Aligned_cols=158  Identities=20%  Similarity=0.259  Sum_probs=119.4

Q ss_pred             CCCCCccEEEcccccceecCCc---cccCCceEEcccceeee--eCCCcccCCCcccEEEccCCcccccCCc-ccccCCc
Q 042715           50 GNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAASSNNFRG--SIPQTCKNEANLAMIELSSNLLEGRVPK-SLASCTE  123 (212)
Q Consensus        50 ~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~  123 (212)
                      ..+++|++|++++|.+.+..+.   .+++|++|++++|.+..  ..|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            5667777777777777654554   34566777777777764  3344566777888888888877753443 3667778


Q ss_pred             ccEEEccCCCCCCcccCCc-ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCC
Q 042715          124 LKFLNLVSEGIFSSTLGNL-IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNP  201 (212)
Q Consensus       124 L~~L~l~~n~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~  201 (212)
                      |+.|++++|.+.......+ ++|+.|++++|+++ .+|..+..+++|++|++++|++...++. ...+++++++++.+||
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence            8888888887754333333 68999999999998 7888788999999999999999965554 4578999999999999


Q ss_pred             CccCCCC
Q 042715          202 GLCGEPL  208 (212)
Q Consensus       202 ~~~~~~~  208 (212)
                      +.|+|++
T Consensus       480 ~~c~c~~  486 (520)
T 2z7x_B          480 WDCSCPR  486 (520)
T ss_dssp             BCCCHHH
T ss_pred             CcccCCc
Confidence            9999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=4.3e-24  Score=162.68  Aligned_cols=197  Identities=17%  Similarity=0.145  Sum_probs=146.8

Q ss_pred             eecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceEEcccc
Q 042715            6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPIAASSN   84 (212)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l~l~~n   84 (212)
                      .++..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ ..+++|++|++++|
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence            35555666666665555566778899999999999997777889999999999999999874332 35667889999988


Q ss_pred             eeeeeCCC----------------cccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---ccc-CCccc
Q 042715           85 NFRGSIPQ----------------TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STL-GNLIV  144 (212)
Q Consensus        85 ~~~~~~~~----------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~-~~~~~  144 (212)
                      .+....+.                ....+++|++|++++|.+.+..+..++.+++|+.|++++|.+..   ..+ ..+++
T Consensus        91 ~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  170 (317)
T 3o53_A           91 YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (317)
T ss_dssp             EEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             ccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence            87642110                01124567777788887776556677778888888888887753   223 35788


Q ss_pred             ccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715          145 LESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC  204 (212)
Q Consensus       145 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~  204 (212)
                      |++|++++|.+++. +. ...+++|++|++++|.+.+.++....+++++.+++++|....
T Consensus       171 L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          171 LEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             CCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             CCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc
Confidence            88899998888754 32 335888999999999998777776688889999999997664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=4.6e-23  Score=169.93  Aligned_cols=205  Identities=19%  Similarity=0.199  Sum_probs=171.4

Q ss_pred             CceeecEEEccCCccc--cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccCC
Q 042715            3 LCFDIIYIKLSGNQLT--GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGKL   76 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l   76 (212)
                      .+++|+.+++++|.+.  +..+..+..+.+|+++++..+.+. ..+..+..+++|+.+++..+......+    ..+.++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence            4677888888888765  234556667888889988888777 345678889999999999887764333    345677


Q ss_pred             ceEEcccceeeeeCCCcccCCCcccEEEccCCccc-ccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccC
Q 042715           77 KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE-GRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSN  152 (212)
Q Consensus        77 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~  152 (212)
                      +.++++.|.+....+..+...+.++.|++++|.+. ...|..+..+++|+.|++++|.+.   +..|.++++|++|+|++
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            89999999999888888889999999999999754 457788999999999999999874   46788999999999999


Q ss_pred             CeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-cc-ccccccccccCCCccCCCC
Q 042715          153 NKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-QF-NTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       153 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~-~~l~~l~l~~n~~~~~~~~  208 (212)
                      |++++..+..+..+++|++|++++|++.+.+|... .+ ++++.+++++|||.|+|.+
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            99998888899999999999999999998888754 44 6899999999999999975

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=7e-24  Score=172.48  Aligned_cols=195  Identities=21%  Similarity=0.282  Sum_probs=163.4

Q ss_pred             eeecEEEccCCccccccCccc-cccCCCceEEccCCeeeecC---CCCCCCCCCccEEEcccccceec-----CCccccC
Q 042715            5 FDIIYIKLSGNQLTGPIPYWL-ENLENISTLWLEKNQLTGCI---PFEIGNLKNLSTLCLEHKQLTGR-----IPSEIGK   75 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~   75 (212)
                      ++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+..   +..+..+++|++|++++|.++..     ....+++
T Consensus       310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred             ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence            46888888888887 666655 57999999999999988644   34578899999999999998632     2456788


Q ss_pred             CceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCcccCCcccccEEEccCCee
Q 042715           76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKL  155 (212)
Q Consensus        76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i  155 (212)
                      |++|++++|.+. .+|..+..+++|++|++++|.+. .++..+  .++|+.|++++|.+... ...+++|++|++++|++
T Consensus       389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N~l  463 (549)
T 2z81_A          389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF-SLFLPRLQELYISRNKL  463 (549)
T ss_dssp             CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC-CCCCTTCCEEECCSSCC
T ss_pred             CCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhh-cccCChhcEEECCCCcc
Confidence            999999999988 67788888899999999999988 444433  26899999999987653 46889999999999999


Q ss_pred             eeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCC
Q 042715          156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      + .+|. ...+++|++|++++|++.+.++. ...+++++.+++++||+.|+|+
T Consensus       464 ~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          464 K-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             S-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             C-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            8 6776 46789999999999999988876 4588999999999999999997

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2.3e-23  Score=155.69  Aligned_cols=187  Identities=21%  Similarity=0.169  Sum_probs=158.0

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCc
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLK   77 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~   77 (212)
                      |+++++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+   ..+++|+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence            4678999999999999997777789999999999999999998888899999999999999999874333   3456889


Q ss_pred             eEEcccceeeee-CCCcccCCCcccEEEccCCcccccCCcccccCCccc----EEEccCCCCCC--cccCCcccccEEEc
Q 042715           78 PIAASSNNFRGS-IPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK----FLNLVSEGIFS--STLGNLIVLESLDL  150 (212)
Q Consensus        78 ~l~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~--~~~~~~~~L~~L~l  150 (212)
                      +|++++|.+... +|..+..+++|++|++++|.+.+..+..+..+..++    .+++++|.+..  .......+|++|++
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L  207 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL  207 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEEC
T ss_pred             EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEEC
Confidence            999999998863 578899999999999999999976667777777776    89999998743  33334458999999


Q ss_pred             cCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc
Q 042715          151 SNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK  187 (212)
Q Consensus       151 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  187 (212)
                      ++|++++..+..+..+++|++|++++|++....+...
T Consensus       208 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          208 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             CSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             CCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence            9999996666677899999999999999987766543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=3.5e-24  Score=181.26  Aligned_cols=199  Identities=18%  Similarity=0.165  Sum_probs=154.9

Q ss_pred             CCCceeecEEEccCCcccc-----------------ccCcccc--ccCCCceEEccCCeeeecCCCCCCCCCCccEEEcc
Q 042715            1 ISLCFDIIYIKLSGNQLTG-----------------PIPYWLE--NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLE   61 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   61 (212)
                      |+++++|++|++++|.+.+                 .+|+.+.  .+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            3568899999999999886                 3788776  89999999999998888888889999999999999


Q ss_pred             ccc-cee-cCCcc----------ccCCceEEcccceeeeeCCC--cccCCCcccEEEccCCcccccCCcccccCCcccEE
Q 042715           62 HKQ-LTG-RIPSE----------IGKLKPIAASSNNFRGSIPQ--TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL  127 (212)
Q Consensus        62 ~~~-~~~-~~~~~----------l~~l~~l~l~~n~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  127 (212)
                      +|. +.+ .+|..          +++|++|++++|.+. .+|.  .+..+++|+.|++++|.+. .+| .++.+++|+.|
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L  600 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL  600 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence            997 765 45543          237889999999988 7777  7888889999999999888 777 78888899999


Q ss_pred             EccCCCCC--CcccCCccc-ccEEEccCCeeeeecChhccCCCC--ccEEEeeCCeeecCCCCCc------ccccccccc
Q 042715          128 NLVSEGIF--SSTLGNLIV-LESLDLSNNKLSGQIPQQFGELTS--LEFFDVSDNLVIGPIPQGK------QFNTFETSS  196 (212)
Q Consensus       128 ~l~~n~~~--~~~~~~~~~-L~~L~l~~n~i~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~------~~~~l~~l~  196 (212)
                      ++++|.+.  +..+..+++ |+.|++++|.+. .+|..+...+.  |+.|++++|.+.+.+|...      ..++++.|+
T Consensus       601 ~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~  679 (876)
T 4ecn_A          601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT  679 (876)
T ss_dssp             ECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred             ECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence            99998774  455777877 889999988887 67776666544  7788888887766554322      223555555


Q ss_pred             cccCCCc
Q 042715          197 FDGNPGL  203 (212)
Q Consensus       197 l~~n~~~  203 (212)
                      +.+|...
T Consensus       680 Ls~N~L~  686 (876)
T 4ecn_A          680 LSYNEIQ  686 (876)
T ss_dssp             CCSSCCC
T ss_pred             ccCCcCC
Confidence            5555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=1.7e-23  Score=158.72  Aligned_cols=190  Identities=22%  Similarity=0.274  Sum_probs=152.8

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEE
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIA   80 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~   80 (212)
                      .+++|++|+++++.+. .++ .+..+++|++|++++|.+....+  +..+++|++|++++|.+.. ++  ..+++|++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~  113 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLD  113 (308)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEE
T ss_pred             HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-chhhcCCCCCCEEE
Confidence            4678999999999887 455 57889999999999999885443  8899999999999998873 33  2456789999


Q ss_pred             cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec
Q 042715           81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI  159 (212)
Q Consensus        81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~  159 (212)
                      +++|.+... + .+..+++|++|++++|.+.+. +. ++.+++|+.|++++|.+.. ..+..+++|+.|++++|.+.+ +
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~  188 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-I  188 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc-C
Confidence            999988753 2 378888999999999988843 33 7888999999999998754 337888999999999999984 3


Q ss_pred             ChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715          160 PQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC  204 (212)
Q Consensus       160 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~  204 (212)
                      +. +..+++|++|++++|++.+..+ ...+++++.+++.+|++.+
T Consensus       189 ~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          189 SP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred             hh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence            33 7888999999999999986664 5688889999999998765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=1.8e-23  Score=160.95  Aligned_cols=190  Identities=24%  Similarity=0.335  Sum_probs=119.4

Q ss_pred             ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceEEcc
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPIAAS   82 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l~l~   82 (212)
                      +++|++|+++++.+... +. +..+++|++|++++|.+....+  +..+++|+.+++++|.+.... ...+++|++|+++
T Consensus       154 l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  229 (347)
T 4fmz_A          154 MTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG  229 (347)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred             CCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEcc
Confidence            33444444444444311 11 4444555555555554442211  444555555555555544221 2334566777777


Q ss_pred             cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecCh
Q 042715           83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQ  161 (212)
Q Consensus        83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~  161 (212)
                      +|.+....+  +..+++|++|++++|.+.+ . ..+..+++|+.|++++|.+.. ..+..+++|++|++++|.+.+..+.
T Consensus       230 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          230 NNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             CCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChh
Confidence            777664322  6667778888888877763 3 356777788888888887654 4466778888888888888777777


Q ss_pred             hccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCC
Q 042715          162 QFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPG  202 (212)
Q Consensus       162 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~  202 (212)
                      .+..+++|++|++++|++.+..| ...+++++++++.+|+.
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             HhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            78888888888888888877666 56778888888888875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=2.1e-23  Score=161.09  Aligned_cols=198  Identities=16%  Similarity=0.101  Sum_probs=162.3

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc----cccCCceEE
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS----EIGKLKPIA   80 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~l~   80 (212)
                      ++|++|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++.    .+++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence            47999999999999666668999999999999999999888888999999999999999998 4443    456889999


Q ss_pred             cccceeeeeCC-CcccCCCcccEEEccCC-cccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCee
Q 042715           81 ASSNNFRGSIP-QTCKNEANLAMIELSSN-LLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKL  155 (212)
Q Consensus        81 l~~n~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i  155 (212)
                      +++|.+..... ..+..+++|++|++++| .+....+..++.+++|+.|++++|.+.   +..+..+++|++|++++|.+
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            99999884333 36788999999999998 466566678889999999999999874   46788899999999999998


Q ss_pred             eeecChhccCCCCccEEEeeCCeeecCCCCC--------------------------------cccccccccccccCCCc
Q 042715          156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQG--------------------------------KQFNTFETSSFDGNPGL  203 (212)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--------------------------------~~~~~l~~l~l~~n~~~  203 (212)
                      .......+..+++|++|++++|.+.+..+..                                ..+++++++++++|...
T Consensus       211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred             ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence            7333334456899999999999998654321                                24678899999999766

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.3e-22  Score=151.25  Aligned_cols=179  Identities=24%  Similarity=0.253  Sum_probs=152.7

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceE
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPI   79 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l   79 (212)
                      .+++|+.|+++++.+. .++ .+..+++|++|++++|.+.+ . ..+..+++|++|++++|.+.+..+   ..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            4678999999999987 343 47889999999999999884 2 478899999999999999985444   345678999


Q ss_pred             EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeee
Q 042715           80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLS  156 (212)
Q Consensus        80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~  156 (212)
                      ++++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+..   ..+..+++|++|++++|.+.
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            999999987666678899999999999999996666678899999999999998754   34678999999999999999


Q ss_pred             eecChhccCCCCccEEEeeCCeeecCCCC
Q 042715          157 GQIPQQFGELTSLEFFDVSDNLVIGPIPQ  185 (212)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  185 (212)
                      +..+..+..+++|++|++++|++.+..|.
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            77777789999999999999999876654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=2.6e-22  Score=170.78  Aligned_cols=111  Identities=20%  Similarity=0.157  Sum_probs=65.4

Q ss_pred             CCCceeecEEEccCCcccccc-CccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc-----ccc
Q 042715            1 ISLCFDIIYIKLSGNQLTGPI-PYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS-----EIG   74 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----~l~   74 (212)
                      |+++++|++|++++|.....+ |..|..+++|++|++++|.+.+..|.+|..+++|++|++++|.+.+..+.     .++
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            345666666666666433233 55666666666666666666666666666666666666666666543322     344


Q ss_pred             CCceEEcccceeeeeCC-CcccCCCcccEEEccCCccc
Q 042715           75 KLKPIAASSNNFRGSIP-QTCKNEANLAMIELSSNLLE  111 (212)
Q Consensus        75 ~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~  111 (212)
                      +|++|++++|.+.+..+ ..++.+++|++|++++|.+.
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            55666666666654332 34556666666666665554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=3.5e-22  Score=166.34  Aligned_cols=199  Identities=17%  Similarity=0.170  Sum_probs=136.1

Q ss_pred             eecEEEccCCccccccCccccccCCCceEEccCCeeeecCC-CCCCCCCCccEEEcccccceecCCc---cccCCceEEc
Q 042715            6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP-FEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAA   81 (212)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l   81 (212)
                      +|+.|++++|.+.+..|..|..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+.   .+++|++|++
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            34444445555554445556666666666666666554333 4555666666666666655533322   2345566666


Q ss_pred             ccceee--eeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-----------cccCCcccccEE
Q 042715           82 SSNNFR--GSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-----------STLGNLIVLESL  148 (212)
Q Consensus        82 ~~n~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-----------~~~~~~~~L~~L  148 (212)
                      ++|.+.  +..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..           ..+.++++|+.|
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence            666654  2456667778888888888888886666678888889999998887642           126778889999


Q ss_pred             EccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCcc
Q 042715          149 DLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLC  204 (212)
Q Consensus       149 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~  204 (212)
                      ++++|++....+..+..+++|++|++++|.+.+.++.. ..+++++.+++.+|....
T Consensus       542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred             ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence            99999988444456888999999999999998666654 377889999999986543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=2e-23  Score=176.68  Aligned_cols=181  Identities=20%  Similarity=0.285  Sum_probs=154.5

Q ss_pred             cCccccccCCCceEEccCCeeee-----------------cCCCCCC--CCCCccEEEcccccceecCCccc---cCCce
Q 042715           21 IPYWLENLENISTLWLEKNQLTG-----------------CIPFEIG--NLKNLSTLCLEHKQLTGRIPSEI---GKLKP   78 (212)
Q Consensus        21 ~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l---~~l~~   78 (212)
                      +|..|..+++|++|++++|.+++                 .+|..+.  .+++|++|++++|.+.+.+|..+   ++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            78889999999999999999997                 3888887  99999999999999888888654   57799


Q ss_pred             EEcccce-eee-eCCCcccCC-------CcccEEEccCCcccccCCc--ccccCCcccEEEccCCCCCC-cccCCccccc
Q 042715           79 IAASSNN-FRG-SIPQTCKNE-------ANLAMIELSSNLLEGRVPK--SLASCTELKFLNLVSEGIFS-STLGNLIVLE  146 (212)
Q Consensus        79 l~l~~n~-~~~-~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~  146 (212)
                      |++++|. +++ .+|..++.+       ++|+.|++++|.+. .+|.  .++.+++|+.|++++|.+.. ..+..+++|+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~  598 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT  598 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEES
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcce
Confidence            9999998 776 566655544       49999999999999 8888  89999999999999998743 2678899999


Q ss_pred             EEEccCCeeeeecChhccCCCC-ccEEEeeCCeeecCCCCCc-cc--ccccccccccCCCcc
Q 042715          147 SLDLSNNKLSGQIPQQFGELTS-LEFFDVSDNLVIGPIPQGK-QF--NTFETSSFDGNPGLC  204 (212)
Q Consensus       147 ~L~l~~n~i~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~-~~--~~l~~l~l~~n~~~~  204 (212)
                      .|++++|.+. .+|..+..+++ |+.|++++|.+. .+|... ..  ++++.+++++|....
T Consensus       599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             EEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence            9999999998 88988999999 999999999998 444433 33  349999999998654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=166.07  Aligned_cols=204  Identities=18%  Similarity=0.170  Sum_probs=171.6

Q ss_pred             CCceeecEEEccCCcccccc--CccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccC
Q 042715            2 SLCFDIIYIKLSGNQLTGPI--PYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGK   75 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~   75 (212)
                      ..+++|++|++++|.+....  +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+    ..+++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            46789999999999988443  67788999999999999999865554 8899999999999999885443    34578


Q ss_pred             CceEEcccceeeeeCCCcccCCCcccEEEccCCccc-ccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEcc
Q 042715           76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE-GRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLS  151 (212)
Q Consensus        76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~  151 (212)
                      |++|++++|.+....+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|.+.   +..+..+++|++|+++
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence            899999999999888888999999999999999987 468889999999999999999874   4678899999999999


Q ss_pred             CCeeeeecChhccCCCCccEEEeeCCeeecCCCCCccc-ccccc--cccccCCCccCCC
Q 042715          152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQF-NTFET--SSFDGNPGLCGEP  207 (212)
Q Consensus       152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~l~~--l~l~~n~~~~~~~  207 (212)
                      +|++++..+..+..+++|++|++++|++.+..|....+ .+++.  ..+.+.+ .|..|
T Consensus       503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~  560 (570)
T 2z63_A          503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS  560 (570)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred             CCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence            99999777788999999999999999999888775544 22222  3456666 77654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=2.9e-23  Score=157.67  Aligned_cols=195  Identities=19%  Similarity=0.199  Sum_probs=149.9

Q ss_pred             ceeecEEEccCCccccccCccc--cccCCCceEEccCCeeeecCC----CCCCCCCCccEEEcccccceecCCc---ccc
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWL--ENLENISTLWLEKNQLTGCIP----FEIGNLKNLSTLCLEHKQLTGRIPS---EIG   74 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~---~l~   74 (212)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+....+.   .++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3568999999999888888877  889999999999998885433    2345688999999999988754444   456


Q ss_pred             CCceEEcccceeeee--C--CCcccCCCcccEEEccCCcccccCCc----ccccCCcccEEEccCCCCCC---cccCCc-
Q 042715           75 KLKPIAASSNNFRGS--I--PQTCKNEANLAMIELSSNLLEGRVPK----SLASCTELKFLNLVSEGIFS---STLGNL-  142 (212)
Q Consensus        75 ~l~~l~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~---~~~~~~-  142 (212)
                      +|++|++++|.+.+.  +  +..+..+++|++|++++|.++ ..+.    .++.+++|++|++++|.+..   ..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            789999999986531  1  233467788999999999886 3332    24677899999999998743   335554 


Q ss_pred             --ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715          143 --IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL  203 (212)
Q Consensus       143 --~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~  203 (212)
                        ++|++|++++|+++ .+|..+.  ++|++|++++|++.+. |....+++++.+++++|++.
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence              68999999999998 6676653  7899999999999865 44567889999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=5.7e-22  Score=149.13  Aligned_cols=172  Identities=26%  Similarity=0.246  Sum_probs=151.2

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAA   81 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l   81 (212)
                      ++++.|++++|.+....+..|..+++|++|++++|.++...+.  ..+++|++|++++|.+. .+|.   .+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            5789999999999977788999999999999999999865443  78999999999999998 5554   4567899999


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeee
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQ  158 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~  158 (212)
                      ++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..   ..+..+++|++|++++|++. .
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence            9999997666789999999999999999997666778899999999999998854   44678999999999999998 7


Q ss_pred             cChhccCCCCccEEEeeCCeee
Q 042715          159 IPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      +|..+...++|+.+++++|++.
T Consensus       187 ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cChhhcccccCCeEEeCCCCcc
Confidence            8888888899999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=7e-23  Score=155.65  Aligned_cols=175  Identities=22%  Similarity=0.249  Sum_probs=146.3

Q ss_pred             CCceeecEEEccCCccccccCcccccc-----CCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceec-------C
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENL-----ENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR-------I   69 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------~   69 (212)
                      +.+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.       .
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            6789999999999999966 8888887     9999999999999988889999999999999999986532       2


Q ss_pred             CccccCCceEEcccceeee--eC-CCcccCCCcccEEEccCCcccccCC-cccccCCcccEEEccCCCCCC--cccCCcc
Q 042715           70 PSEIGKLKPIAASSNNFRG--SI-PQTCKNEANLAMIELSSNLLEGRVP-KSLASCTELKFLNLVSEGIFS--STLGNLI  143 (212)
Q Consensus        70 ~~~l~~l~~l~l~~n~~~~--~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~--~~~~~~~  143 (212)
                      +..+++|++|++++|.+..  .. ...+..+++|++|++++|.+.+..| ..+..+++|+.|++++|.+..  ..+.  +
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~  274 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A  274 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence            3567889999999999873  11 1334567899999999999986554 456678999999999998854  3333  7


Q ss_pred             cccEEEccCCeeeeecChhccCCCCccEEEeeCCeeec
Q 042715          144 VLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG  181 (212)
Q Consensus       144 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  181 (212)
                      +|++|++++|++++. |. +..+++|++|++++|++.+
T Consensus       275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            899999999999854 66 8899999999999998864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=3.8e-22  Score=164.09  Aligned_cols=182  Identities=20%  Similarity=0.236  Sum_probs=160.0

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCC-CCCCCCCCccEEEcccccceecCCcc---ccCCc
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP-FEIGNLKNLSTLCLEHKQLTGRIPSE---IGKLK   77 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~   77 (212)
                      ..+++|++|++++|.+. .+|..|..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..   +++|+
T Consensus       373 ~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  451 (606)
T 3vq2_A          373 LGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN  451 (606)
T ss_dssp             HCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             ccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence            46789999999999988 577889999999999999999997766 68899999999999999998766654   46789


Q ss_pred             eEEcccceeee-eCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCC
Q 042715           78 PIAASSNNFRG-SIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNN  153 (212)
Q Consensus        78 ~l~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n  153 (212)
                      +|++++|.+.+ ..+..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+.   +..+..+++|+.|++++|
T Consensus       452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence            99999999987 46888999999999999999999888888999999999999999875   467889999999999999


Q ss_pred             eeeeecChhccCCC-CccEEEeeCCeeecCCCC
Q 042715          154 KLSGQIPQQFGELT-SLEFFDVSDNLVIGPIPQ  185 (212)
Q Consensus       154 ~i~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~  185 (212)
                      +++ .+|..+..++ +|++|++++|++....+.
T Consensus       532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             cCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            998 6676688887 599999999999765443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=1.1e-21  Score=161.75  Aligned_cols=67  Identities=25%  Similarity=0.294  Sum_probs=44.3

Q ss_pred             cCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccC
Q 042715          139 LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCG  205 (212)
Q Consensus       139 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~  205 (212)
                      +..+++|++|+|++|++.+..|.+|.++++|++|+|++|++.+.++.. ..+++++.|++++|....-
T Consensus       490 ~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  557 (635)
T 4g8a_A          490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  557 (635)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred             hhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence            344556677777777776666667777777777777777776655543 3566777777777765543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.88  E-value=1.8e-22  Score=163.30  Aligned_cols=81  Identities=20%  Similarity=0.143  Sum_probs=48.8

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccccee-cCCcc---ccCCc
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG-RIPSE---IGKLK   77 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~---l~~l~   77 (212)
                      +++++|++|++++|.+.+..|+.|..+++|++|++++|.++. +|..  .+++|++|++++|.+.+ .+|..   +++|+
T Consensus        42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~  118 (520)
T 2z7x_B           42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK  118 (520)
T ss_dssp             TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred             cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence            456777777777777776666677777777777777777663 3332  56666666666666553 22322   23444


Q ss_pred             eEEcccce
Q 042715           78 PIAASSNN   85 (212)
Q Consensus        78 ~l~l~~n~   85 (212)
                      +|++++|.
T Consensus       119 ~L~L~~n~  126 (520)
T 2z7x_B          119 FLGLSTTH  126 (520)
T ss_dssp             EEEEEESS
T ss_pred             EEEecCcc
Confidence            45544443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=8.5e-22  Score=160.79  Aligned_cols=107  Identities=18%  Similarity=0.139  Sum_probs=83.3

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSN   84 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n   84 (212)
                      ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|++|..+++|++|++++|.++......+++|++|++++|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N  131 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFN  131 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSS
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence            57888888888888666678888888888888888888777888888888888888888887322235667888888888


Q ss_pred             eeee-eCCCcccCCCcccEEEccCCccc
Q 042715           85 NFRG-SIPQTCKNEANLAMIELSSNLLE  111 (212)
Q Consensus        85 ~~~~-~~~~~~~~~~~L~~L~l~~~~~~  111 (212)
                      .+.. ..|..+..+++|++|++++|.+.
T Consensus       132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          132 DFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CccccCchHhhcccCcccEEecCCCccc
Confidence            8775 23467777788888888877665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=1.9e-21  Score=154.86  Aligned_cols=186  Identities=17%  Similarity=0.223  Sum_probs=87.6

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcc
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAAS   82 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~   82 (212)
                      ++++|++|+++++.+.+ +| .+..+++|++|++++|.+++. +  +..+++|++|++++|.+.+.....+++|++|+++
T Consensus        40 ~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~  114 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCD  114 (457)
T ss_dssp             HHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECC
T ss_pred             HcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceeecCCCCcCCEEECC
Confidence            34556666666666653 23 355566666666666665532 2  4555555566655555553322334445555555


Q ss_pred             cceeeeeCCCcccCCCcccEEEccCCcccccCC--------------------cccccCCcccEEEccCCCCCCcccCCc
Q 042715           83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP--------------------KSLASCTELKFLNLVSEGIFSSTLGNL  142 (212)
Q Consensus        83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~  142 (212)
                      +|.+.. ++  +..+++|++|++++|.+++ .+                    ..++.+++|+.|++++|.+....+..+
T Consensus       115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l  190 (457)
T 3bz5_A          115 TNKLTK-LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQN  190 (457)
T ss_dssp             SSCCSC-CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTC
T ss_pred             CCcCCe-ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccC
Confidence            555443 11  4444444555554444442 11                    012233344444444443333233444


Q ss_pred             ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCC
Q 042715          143 IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPG  202 (212)
Q Consensus       143 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~  202 (212)
                      ++|+.|++++|.+++.   .+..+++|++|++++|++.+ +| ...+++++.+++.+|..
T Consensus       191 ~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          191 KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCC
T ss_pred             CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcC
Confidence            4444444444444421   14444555555555555544 22 33445555555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.1e-21  Score=144.71  Aligned_cols=154  Identities=20%  Similarity=0.214  Sum_probs=135.0

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAA   81 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l   81 (212)
                      +++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+   ..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            568999999999998888889999999999999999998888889999999999999999984433   34568899999


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeee
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQ  158 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~  158 (212)
                      ++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+..   ..+..+++|+.|++++|.+...
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9999986666667889999999999999996666678999999999999998754   4577899999999999999754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=4.2e-22  Score=162.01  Aligned_cols=196  Identities=17%  Similarity=0.163  Sum_probs=151.5

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAA   81 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l   81 (212)
                      ++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+.+|..+++|++|++++|.+.+..+.   .+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            4789999999999877788899999999999999999988888899999999999999998854433   4567899999


Q ss_pred             ccceeee-eCCCcccCCCcccEEEccCCc-ccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeee
Q 042715           82 SSNNFRG-SIPQTCKNEANLAMIELSSNL-LEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLS  156 (212)
Q Consensus        82 ~~n~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~  156 (212)
                      ++|.+.. ..+..+..+++|++|++++|. +....+..++.+++|++|++++|.+.   +..+..+++|++|++++|.+.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            9998875 345678888999999999997 44333467888999999999998773   466778888888888888876


Q ss_pred             eecChh-ccCCCCccEEEeeCCeeecCC----CCCcccccccccccccCC
Q 042715          157 GQIPQQ-FGELTSLEFFDVSDNLVIGPI----PQGKQFNTFETSSFDGNP  201 (212)
Q Consensus       157 ~~~~~~-~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~l~~l~l~~n~  201 (212)
                       .++.. +..+++|++|++++|.+.+..    +.....+.++.+.+.+|.
T Consensus       186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence             44443 356888899999998887642    212234455555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=1.2e-21  Score=141.62  Aligned_cols=134  Identities=22%  Similarity=0.272  Sum_probs=99.2

Q ss_pred             CCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEcc
Q 042715           75 KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLS  151 (212)
Q Consensus        75 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~  151 (212)
                      .+++|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+..   ..+.++++|++|+++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            34555555555554444566677778888888887776667777778888888888887643   335677888888888


Q ss_pred             CCeeeeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCCC
Q 042715          152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      +|++.+..+..+..+++|++|++++|.+.+..+. ...+++++.+++.+||+.|+|.+
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            8888877777888888888888888888876665 34677888888888888888864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=1.1e-22  Score=163.29  Aligned_cols=203  Identities=19%  Similarity=0.179  Sum_probs=159.3

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCC----------------CCCCCCCccEEEccccc
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPF----------------EIGNLKNLSTLCLEHKQ   64 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------------~~~~l~~L~~L~l~~~~   64 (212)
                      |+++++|++|++++|.+.+..|  |..+++|++|++++|.+++..+.                ....+++|+.|++++|.
T Consensus        54 ~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~  131 (487)
T 3oja_A           54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK  131 (487)
T ss_dssp             GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSC
T ss_pred             HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCC
Confidence            3567888999999988875444  78888888888888877643221                01235788899999998


Q ss_pred             ceecCCc---cccCCceEEcccceeeeeCCCccc-CCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--Ccc
Q 042715           65 LTGRIPS---EIGKLKPIAASSNNFRGSIPQTCK-NEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SST  138 (212)
Q Consensus        65 ~~~~~~~---~l~~l~~l~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~  138 (212)
                      +.+..+.   .+++|++|++++|.+++..+..+. .+++|++|++++|.+.+..  ....+++|+.|++++|.+.  +..
T Consensus       132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~  209 (487)
T 3oja_A          132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE  209 (487)
T ss_dssp             CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh
Confidence            8855443   456789999999999987777665 7899999999999998553  2346899999999999884  356


Q ss_pred             cCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee-cCCCC-Ccccccccccccc-------cCCCccCCCC
Q 042715          139 LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI-GPIPQ-GKQFNTFETSSFD-------GNPGLCGEPL  208 (212)
Q Consensus       139 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~-~~~~~~l~~l~l~-------~n~~~~~~~~  208 (212)
                      +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. +.+|. ...++.++.+.+.       +++..|.++.
T Consensus       210 ~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            788999999999999998 57888899999999999999997 33332 3366777778876       8999998874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.87  E-value=6.5e-22  Score=158.08  Aligned_cols=194  Identities=23%  Similarity=0.324  Sum_probs=116.7

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCC--------------------CCCCCCCCccEEEcc
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP--------------------FEIGNLKNLSTLCLE   61 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------~~~~~l~~L~~L~l~   61 (212)
                      +++++|++|++++|.+.. + ..+..+++|++|++++|.+.+..+                    ..+..+++|+.|+++
T Consensus       174 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          174 ANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA  251 (466)
T ss_dssp             TTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             ccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence            345566666666665542 2 224555555555555555443222                    133444555555555


Q ss_pred             cccceecCC-ccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-ccc
Q 042715           62 HKQLTGRIP-SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STL  139 (212)
Q Consensus        62 ~~~~~~~~~-~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~  139 (212)
                      +|.+.+..+ ..+++|++|++++|.+....+  +..+++|+.|++++|.+.+..  .++.+++|+.|++++|.+.. ..+
T Consensus       252 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~  327 (466)
T 1o6v_A          252 NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISPV  327 (466)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGGG
T ss_pred             CCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCchhh
Confidence            554442211 233455666666665553222  555666777777776666332  25667777777777776643 335


Q ss_pred             CCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715          140 GNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC  204 (212)
Q Consensus       140 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~  204 (212)
                      ..+++|+.|++++|.+.+.  ..+..+++|+.|++++|++.+..| ...+++++.+++.+|++..
T Consensus       328 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          328 SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence            6777788888888877643  457778888888888888877766 5677888888888887765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.87  E-value=8.2e-22  Score=151.73  Aligned_cols=200  Identities=17%  Similarity=0.226  Sum_probs=124.5

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceE
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPI   79 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l   79 (212)
                      |+++++|++|++++|.+.. .+. +..+++|++|++++|..... ...+..+++|++|++++|.+.... ...+++|++|
T Consensus       106 ~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  182 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSL  182 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             HcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchhhccCCCCCEE
Confidence            3567788888888887773 333 66777777777777744422 223566666666666666554211 1234445555


Q ss_pred             EcccceeeeeCC--------------------CcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cc
Q 042715           80 AASSNNFRGSIP--------------------QTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-ST  138 (212)
Q Consensus        80 ~l~~n~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~  138 (212)
                      ++++|.+....+                    ..+..+++|++|++++|.+.+ .+. +..+++|+.|++++|.+.. ..
T Consensus       183 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~  260 (347)
T 4fmz_A          183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDINA  260 (347)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             EccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCChh
Confidence            555554432111                    114555667777777776663 222 6667777777777776644 44


Q ss_pred             cCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCC
Q 042715          139 LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       139 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      +..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+.. ..+++++++++++|+.....+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             HhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            6677777778888777763 3 34677778888888888776655442 367778888888887665544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=6.9e-21  Score=151.66  Aligned_cols=168  Identities=24%  Similarity=0.229  Sum_probs=110.2

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccccee---------------
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG---------------   67 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------   67 (212)
                      .+++|++|++++|.+.+ +|  +..+++|++|++++|.+++. +  +..+++|++|++++|.+.+               
T Consensus        62 ~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~  135 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCA  135 (457)
T ss_dssp             GCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred             ccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECC
Confidence            44555555555555553 22  44555555555555555432 1  4445555555555554442               


Q ss_pred             ------cCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCcccCC
Q 042715           68 ------RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGN  141 (212)
Q Consensus        68 ------~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  141 (212)
                            .....+++|++|++++|...+.+  .+..+++|++|++++|.+++ +|  ++.+++|+.|++++|.+....+..
T Consensus       136 ~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~  210 (457)
T 3bz5_A          136 RNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQ  210 (457)
T ss_dssp             TSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTT
T ss_pred             CCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeecccc
Confidence                  21223334445555544322222  35667788888888888884 44  778899999999999887777889


Q ss_pred             cccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCC
Q 042715          142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP  184 (212)
Q Consensus       142 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  184 (212)
                      +++|++|++++|++++ +|  +..+++|++|++++|++.+.++
T Consensus       211 l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          211 NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence            9999999999999985 56  7788999999999999987653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.6e-21  Score=147.84  Aligned_cols=171  Identities=23%  Similarity=0.315  Sum_probs=144.6

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceE
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPI   79 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l   79 (212)
                      +.+++|++|++++|.+.. .+. +..+++|++|++++|.+.. . ..+..+++|++|++++|.+.. ++  ..+++|++|
T Consensus        60 ~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L  134 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD-VTPLAGLSNLQVL  134 (308)
T ss_dssp             GGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC-CGGGTTCTTCCEE
T ss_pred             hccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCC-chhhcCCCCCCEE
Confidence            568899999999999984 444 8999999999999999884 3 368899999999999999873 33  356788999


Q ss_pred             EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeee
Q 042715           80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQ  158 (212)
Q Consensus        80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~  158 (212)
                      ++++|.+....+  +..+++|++|++++|.+.+ .+. +..+++|+.|++++|.+.. ..+..+++|++|++++|.+.+.
T Consensus       135 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV  210 (308)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBC
T ss_pred             ECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcc
Confidence            999999875432  7888999999999999984 443 8899999999999998854 3478899999999999999854


Q ss_pred             cChhccCCCCccEEEeeCCeeecCC
Q 042715          159 IPQQFGELTSLEFFDVSDNLVIGPI  183 (212)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~n~~~~~~  183 (212)
                      .  .+..+++|++|++++|++.+.+
T Consensus       211 ~--~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          211 S--PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             G--GGTTCTTCCEEEEEEEEEECCC
T ss_pred             c--cccCCCCCCEEEccCCeeecCC
Confidence            4  3889999999999999998643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.86  E-value=2.3e-21  Score=154.94  Aligned_cols=188  Identities=23%  Similarity=0.328  Sum_probs=110.7

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceE
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPI   79 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l   79 (212)
                      ++++++|++|++++ .+. ..+ .+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+..+ ..+++|++|
T Consensus       152 ~~~l~~L~~L~l~~-~~~-~~~-~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  226 (466)
T 1o6v_A          152 LSGLTSLQQLSFGN-QVT-DLK-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDEL  226 (466)
T ss_dssp             GTTCTTCSEEEEEE-SCC-CCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred             hccCCcccEeecCC-ccc-Cch-hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEE
Confidence            35788999999974 444 233 388999999999999998843  357889999999999998874333 345667777


Q ss_pred             EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeee
Q 042715           80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQ  158 (212)
Q Consensus        80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~  158 (212)
                      ++++|.+...  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.. ..+..+++|+.|++++|++.+.
T Consensus       227 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~  302 (466)
T 1o6v_A          227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI  302 (466)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC
T ss_pred             ECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCc
Confidence            7777776532  245555666666666666653322  4555556666665554432 2244444555555555544422


Q ss_pred             cChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccC
Q 042715          159 IPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGN  200 (212)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n  200 (212)
                      .+  +..+++|++|++++|.+.+..+ ...+++++++++.+|
T Consensus       303 ~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          303 SP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             GG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred             hh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence            11  3344444444444444443332 223333444444333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.86  E-value=2.1e-21  Score=150.37  Aligned_cols=135  Identities=21%  Similarity=0.217  Sum_probs=96.2

Q ss_pred             cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEc
Q 042715           74 GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDL  150 (212)
Q Consensus        74 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l  150 (212)
                      ++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.   +..+..+++|++|+|
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  143 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL  143 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence            34444555555544444556777788888888888887666667788888888888888774   356778888999999


Q ss_pred             cCCeeeeecChhc---cCCCCccEEEeeCCeeecCCCCC-ccccc--ccccccccCCCccCCCC
Q 042715          151 SNNKLSGQIPQQF---GELTSLEFFDVSDNLVIGPIPQG-KQFNT--FETSSFDGNPGLCGEPL  208 (212)
Q Consensus       151 ~~n~i~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~-~~~~~--l~~l~l~~n~~~~~~~~  208 (212)
                      ++|.+.+..+..+   ..+++|++|+|++|.+.+.++.. ..++.  ++.+++.+||+.|+|.+
T Consensus       144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL  207 (361)
T ss_dssp             CSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred             CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence            9999884333344   56889999999999988654332 24444  47899999999999864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=4.1e-21  Score=138.86  Aligned_cols=153  Identities=20%  Similarity=0.211  Sum_probs=76.2

Q ss_pred             ceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCccc
Q 042715           32 STLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE  111 (212)
Q Consensus        32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~  111 (212)
                      +.++++++.++ .+|..+  .+.+++|++++|.+....+                    ...+..+++|++|++++|.+.
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~--------------------~~~~~~l~~L~~L~L~~N~i~   70 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEA--------------------TGIFKKLPQLRKINFSNNKIT   70 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECC--------------------CCCGGGCTTCCEEECCSSCCC
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCc--------------------hhhhccCCCCCEEECCCCcCC
Confidence            46666666665 334332  2334566666666553222                    122344445555555555554


Q ss_pred             ccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-Cc
Q 042715          112 GRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GK  187 (212)
Q Consensus       112 ~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~  187 (212)
                      +..+..+..+++|+.|++++|.+..   ..+.++++|++|++++|++.+..|..+..+++|++|++++|.+.+..|. ..
T Consensus        71 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           71 DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred             EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence            3333344555555555555554422   2244455555555555555544455555555555555555555544332 22


Q ss_pred             ccccccccccccCCCccCCC
Q 042715          188 QFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       188 ~~~~l~~l~l~~n~~~~~~~  207 (212)
                      .+++++.+++.+||+.|+|+
T Consensus       151 ~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          151 TLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TCTTCCEEECCSCCEECSGG
T ss_pred             CCCCCCEEEecCcCCcCCCc
Confidence            45555555555555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=7.1e-22  Score=149.99  Aligned_cols=177  Identities=19%  Similarity=0.198  Sum_probs=144.3

Q ss_pred             CCceeecEEEccCCccccccC----ccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccccee-------cCC
Q 042715            2 SLCFDIIYIKLSGNQLTGPIP----YWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG-------RIP   70 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~   70 (212)
                      +.+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+       ...
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            568999999999999986544    344579999999999999998888899999999999999998653       223


Q ss_pred             ccccCCceEEcccceeeeeCCC----cccCCCcccEEEccCCcccccCCcccccC---CcccEEEccCCCCCCcccCCcc
Q 042715           71 SEIGKLKPIAASSNNFRGSIPQ----TCKNEANLAMIELSSNLLEGRVPKSLASC---TELKFLNLVSEGIFSSTLGNLI  143 (212)
Q Consensus        71 ~~l~~l~~l~l~~n~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~  143 (212)
                      ..+++|++|++++|.++. ++.    .+..+++|++|++++|.+.+..|..+..+   ++|++|++++|.+....-.-.+
T Consensus       194 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~  272 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA  272 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCS
T ss_pred             hcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcC
Confidence            567889999999999862 222    24677899999999999997767777666   6999999999988643222347


Q ss_pred             cccEEEccCCeeeeecChhccCCCCccEEEeeCCeeec
Q 042715          144 VLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG  181 (212)
Q Consensus       144 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  181 (212)
                      +|++|++++|++++ +|. +..+++|+.|++++|++..
T Consensus       273 ~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          273 KLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence            99999999999984 454 6788999999999998863

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=6.5e-21  Score=139.47  Aligned_cols=173  Identities=17%  Similarity=0.147  Sum_probs=143.5

Q ss_pred             CCCceeecEEEccCCc-cccccCccccccCCCceEEccC-CeeeecCCCCCCCCCCccEEEcccccceecCCc--cccCC
Q 042715            1 ISLCFDIIYIKLSGNQ-LTGPIPYWLENLENISTLWLEK-NQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS--EIGKL   76 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l   76 (212)
                      |+++++|++|++++|. +....+..|..+++|++|++++ |.++...+..|..+++|++|++++|.+. .+|.  .+.++
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~~~~l~~L  129 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYST  129 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCCCTTCCBC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-ccccccccccc
Confidence            4678999999999997 8866666899999999999998 9999878888999999999999999988 4554  44556


Q ss_pred             c---eEEcccc-eeeeeCCCcccCCCccc-EEEccCCcccccCCcccccCCcccEEEccCCC-CC---CcccCCc-cccc
Q 042715           77 K---PIAASSN-NFRGSIPQTCKNEANLA-MIELSSNLLEGRVPKSLASCTELKFLNLVSEG-IF---SSTLGNL-IVLE  146 (212)
Q Consensus        77 ~---~l~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~---~~~~~~~-~~L~  146 (212)
                      +   +|++++| .+....+..+..+++|+ +|++++|.+. .+|......++|+.|++++|+ +.   +..+.++ ++|+
T Consensus       130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~  208 (239)
T 2xwt_C          130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS  208 (239)
T ss_dssp             CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred             ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence            6   9999999 88876667789999999 9999999998 444433333899999999995 53   3567888 9999


Q ss_pred             EEEccCCeeeeecChhccCCCCccEEEeeCCe
Q 042715          147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL  178 (212)
Q Consensus       147 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~  178 (212)
                      .|++++|+++ .+|..  .+++|+.|+++++.
T Consensus       209 ~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          209 LLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             EEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             EEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            9999999998 55543  67889999998774

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=2.2e-20  Score=135.85  Aligned_cols=151  Identities=21%  Similarity=0.246  Sum_probs=106.8

Q ss_pred             ccEEEcccccceecCCccc-cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC
Q 042715           55 LSTLCLEHKQLTGRIPSEI-GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG  133 (212)
Q Consensus        55 L~~L~l~~~~~~~~~~~~l-~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  133 (212)
                      .+.++.+++.+. .+|..+ +++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeEccCCCcC-ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            334444444444 333332 345556666666555555667777788888888888875555566778888888888887


Q ss_pred             CCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCC
Q 042715          134 IFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       134 ~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      +..   ..+..+++|++|++++|++. .+|..+..+++|++|++++|.+.+..+. ...+++++.+++.+||+.|+|+
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            643   34667888888888888887 6777788888888888888888866654 3467888888888888888875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=4.2e-20  Score=139.01  Aligned_cols=170  Identities=24%  Similarity=0.333  Sum_probs=140.6

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEE
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIA   80 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~   80 (212)
                      .+++|++|+++++.+. .++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.. ++  ..+++|++|+
T Consensus        44 ~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~  118 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLS  118 (291)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEE
T ss_pred             hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEE
Confidence            4678999999999988 444 47889999999999999985444  8899999999999998873 33  3456789999


Q ss_pred             cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec
Q 042715           81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI  159 (212)
Q Consensus        81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~  159 (212)
                      +++|.+...  ..+..+++|++|++++|.+.+.  ..++.+++|+.|++++|.+.. ..+..+++|++|++++|.+++ +
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~-l  193 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-L  193 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-C
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC-C
Confidence            999998753  4677889999999999999843  578889999999999998754 347889999999999999984 4


Q ss_pred             ChhccCCCCccEEEeeCCeeecCC
Q 042715          160 PQQFGELTSLEFFDVSDNLVIGPI  183 (212)
Q Consensus       160 ~~~~~~~~~L~~L~l~~n~~~~~~  183 (212)
                      + .+..+++|+.|++++|++....
T Consensus       194 ~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          194 R-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             h-hhccCCCCCEEECcCCcccCCc
Confidence            4 4889999999999999987543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=1.1e-19  Score=149.23  Aligned_cols=77  Identities=22%  Similarity=0.162  Sum_probs=50.1

Q ss_pred             CcccEEEccCCCCCCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCC
Q 042715          122 TELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNP  201 (212)
Q Consensus       122 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~  201 (212)
                      ++|+.|++++|.+.... ..+++|+.|++++|.++ .+|.   .+++|++|++++|.+...++....+++++.+++.+|+
T Consensus       221 ~~L~~L~Ls~N~L~~lp-~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP-VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             TTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCCEEEccCCccCcCC-CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence            44555566655554322 44566777777777776 4454   4577788888888877544444577788888888887


Q ss_pred             Cc
Q 042715          202 GL  203 (212)
Q Consensus       202 ~~  203 (212)
                      +.
T Consensus       296 l~  297 (622)
T 3g06_A          296 LS  297 (622)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=9e-20  Score=131.82  Aligned_cols=149  Identities=23%  Similarity=0.285  Sum_probs=94.1

Q ss_pred             cEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceee
Q 042715            8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFR   87 (212)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~   87 (212)
                      +.++.+++.+. .+|..+.  +++++|++++|.+....+..|..+++|++|++++|.+...                   
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-------------------   71 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-------------------   71 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-------------------
Confidence            45677777766 5555443  5778888888877766666777777777777777777633                   


Q ss_pred             eeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhcc
Q 042715           88 GSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFG  164 (212)
Q Consensus        88 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  164 (212)
                        .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.   +..+..+++|++|++++|.+.+..+..+.
T Consensus        72 --~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  149 (220)
T 2v9t_B           72 --APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS  149 (220)
T ss_dssp             --CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             --CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence              3344455556666666666665333344555666666666666553   24455666666666666666655555566


Q ss_pred             CCCCccEEEeeCCeee
Q 042715          165 ELTSLEFFDVSDNLVI  180 (212)
Q Consensus       165 ~~~~L~~L~l~~n~~~  180 (212)
                      .+++|++|++++|++.
T Consensus       150 ~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          150 PLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEEeCCCCcC
Confidence            6666777777777664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=2e-20  Score=134.13  Aligned_cols=170  Identities=18%  Similarity=0.169  Sum_probs=134.3

Q ss_pred             cEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEcccc
Q 042715            8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAASSN   84 (212)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l~~n   84 (212)
                      +.++.+++.+. .+|..+  .++|++|++++|.++...+..|..+++|++|++++|.+....+   ..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            56777777776 455443  4689999999999887777778889999999999998874333   24567899999999


Q ss_pred             eeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecCh
Q 042715           85 NFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQ  161 (212)
Q Consensus        85 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~  161 (212)
                      .+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..   ..+..+++|++|++++|.+.+    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----  162 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----  162 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence            8886555667888999999999999986666668889999999999997743   346788999999999997753    


Q ss_pred             hccCCCCccEEEeeCCeeecCCCCCc
Q 042715          162 QFGELTSLEFFDVSDNLVIGPIPQGK  187 (212)
Q Consensus       162 ~~~~~~~L~~L~l~~n~~~~~~~~~~  187 (212)
                         .++.++.|+++.|.+.+.+|...
T Consensus       163 ---~~~~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          163 ---TCPGIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             ---CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred             ---CCCCHHHHHHHHHhCCceeeccC
Confidence               45678999999999998887643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.1e-19  Score=147.58  Aligned_cols=177  Identities=23%  Similarity=0.268  Sum_probs=134.6

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcccc-CCceEEccc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG-KLKPIAASS   83 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~l~l~~   83 (212)
                      .+++.|+++++.+.+ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. ++ +|++|++++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCS
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCC
Confidence            378899999999884 66654  378999999999988 455   457889999999998884 666 54 788999999


Q ss_pred             ceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCcc-cCCcccccEEEccCCeeeeecChh
Q 042715           84 NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSST-LGNLIVLESLDLSNNKLSGQIPQQ  162 (212)
Q Consensus        84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~  162 (212)
                      |.++. +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|.+.... +.  ++|+.|++++|+|+ .+|. 
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS-SCCC-
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCC-chhh-
Confidence            98875 554   56788999999998884 554   4678899999998764311 33  78889999999887 6666 


Q ss_pred             ccCCCCc-------cEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715          163 FGELTSL-------EFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC  204 (212)
Q Consensus       163 ~~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~  204 (212)
                      +..  +|       ++|++++|.+...++....+++++.+++.+|++.+
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence            444  67       88999999888655545578888888998888754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=7.7e-20  Score=132.15  Aligned_cols=151  Identities=23%  Similarity=0.236  Sum_probs=106.6

Q ss_pred             cEEEccCCccccccCccccccCCCceEEccCCeeeecCC-CCCCCCCCccEEEcccccceecCCccccCCceEEccccee
Q 042715            8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP-FEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNF   86 (212)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~   86 (212)
                      +.++++++.+. .+|..+.  +.+++|++++|.+++..+ ..|..+++|++|++++|.++...                 
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-----------------   73 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-----------------   73 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-----------------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-----------------
Confidence            58999999988 5676553  467999999999997644 55788999999999999887322                 


Q ss_pred             eeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhc
Q 042715           87 RGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQF  163 (212)
Q Consensus        87 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~  163 (212)
                          +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.   +..+.++++|++|++++|++++..|..+
T Consensus        74 ----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  149 (220)
T 2v70_A           74 ----EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF  149 (220)
T ss_dssp             ----TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred             ----HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence                234455566666666666666555555666666777777666653   3455666777777777777776556777


Q ss_pred             cCCCCccEEEeeCCeeecC
Q 042715          164 GELTSLEFFDVSDNLVIGP  182 (212)
Q Consensus       164 ~~~~~L~~L~l~~n~~~~~  182 (212)
                      ..+++|++|++++|++...
T Consensus       150 ~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          150 DTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTCTTCCEEECCSCCEECS
T ss_pred             cCCCCCCEEEecCcCCcCC
Confidence            7777777777777777643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=6.5e-20  Score=130.36  Aligned_cols=151  Identities=13%  Similarity=0.198  Sum_probs=94.9

Q ss_pred             ccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEEcccceeeeeCCCcccCCCcccE
Q 042715           25 LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAASSNNFRGSIPQTCKNEANLAM  102 (212)
Q Consensus        25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~  102 (212)
                      ...+++|++|+++++.+. ..+ .+..+++|++|++++|.+. .++  ..+++|++|++++|.+....+..+..+++|++
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            356778888888888877 444 5777888888888887554 221  23345556666666555444556666677777


Q ss_pred             EEccCCcccccCCcccccCCcccEEEccCCC-CCC-cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee
Q 042715          103 IELSSNLLEGRVPKSLASCTELKFLNLVSEG-IFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       103 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      |++++|.+.+..+..++.+++|+.|++++|. +.. ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|++.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            7777777665555566666677777777765 322 345566667777777776663 33 4566666777777776654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=1.5e-22  Score=158.06  Aligned_cols=204  Identities=19%  Similarity=0.181  Sum_probs=124.2

Q ss_pred             CceeecEEEccCCccc---cccCccc-------cccCCCceEEccCCeeee----cCCCCCCCCCCccEEEcccccceec
Q 042715            3 LCFDIIYIKLSGNQLT---GPIPYWL-------ENLENISTLWLEKNQLTG----CIPFEIGNLKNLSTLCLEHKQLTGR   68 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~   68 (212)
                      ++++|++|+++++.+.   +..|..+       ..+++|++|++++|.+..    ..+..+..+++|++|++++|.+...
T Consensus        58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            4555666666554322   2223222       455666666666666553    2344455566666666666665421


Q ss_pred             CC----ccc------------cCCceEEcccceeee-eCC---CcccCCCcccEEEccCCcccc-----cCCcccccCCc
Q 042715           69 IP----SEI------------GKLKPIAASSNNFRG-SIP---QTCKNEANLAMIELSSNLLEG-----RVPKSLASCTE  123 (212)
Q Consensus        69 ~~----~~l------------~~l~~l~l~~n~~~~-~~~---~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~  123 (212)
                      .+    ..+            ++|++|++++|.+.. ..+   ..+..+++|++|++++|.+..     ..+..+..+++
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence            11    111            566777777776652 222   234456677788887777662     23335667778


Q ss_pred             ccEEEccCCCCC-------CcccCCcccccEEEccCCeeeee----cChhccC--CCCccEEEeeCCeeec----CCCCC
Q 042715          124 LKFLNLVSEGIF-------SSTLGNLIVLESLDLSNNKLSGQ----IPQQFGE--LTSLEFFDVSDNLVIG----PIPQG  186 (212)
Q Consensus       124 L~~L~l~~n~~~-------~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~--~~~L~~L~l~~n~~~~----~~~~~  186 (212)
                      |+.|++++|.+.       +..+..+++|++|++++|.+.+.    ++..+..  +++|++|++++|.+.+    .++..
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~  297 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  297 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence            888888888763       34566777888888888887654    4555533  7888888888888876    24433


Q ss_pred             c--ccccccccccccCCCccCC
Q 042715          187 K--QFNTFETSSFDGNPGLCGE  206 (212)
Q Consensus       187 ~--~~~~l~~l~l~~n~~~~~~  206 (212)
                      .  .+++++.+++.+|+.....
T Consensus       298 l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          298 IDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHhcCCCceEEEccCCcCCcch
Confidence            2  4678888888888876544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.82  E-value=3.7e-20  Score=147.37  Aligned_cols=187  Identities=18%  Similarity=0.183  Sum_probs=99.6

Q ss_pred             ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCc-------------cEEEccccccee---
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNL-------------STLCLEHKQLTG---   67 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~---   67 (212)
                      ...|++|+++++.+ +.+|..++.+++|++|++++|.+.+..|..+..+.+|             ++|++++|.+++   
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~   88 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE   88 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence            35667777777777 3667667777777777777776666666666555443             555555554441   


Q ss_pred             ----------------cCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccC
Q 042715           68 ----------------RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS  131 (212)
Q Consensus        68 ----------------~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  131 (212)
                                      .+|..+++|++|++++|.+.+ ++..   .++|++|++++|.+.+ +| .++.+++|++|++++
T Consensus        89 ~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A           89 LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN  162 (454)
T ss_dssp             CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred             CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence                            233334445555555554432 1111   1467777777777773 55 477777788888887


Q ss_pred             CCCCCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715          132 EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL  203 (212)
Q Consensus       132 n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~  203 (212)
                      |.+.... ....+|++|++++|++.+ +| .+..+++|++|++++|.+.+.+ ..  .++++++++.+|...
T Consensus       163 N~l~~lp-~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~-~~--~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          163 NSLKKLP-DLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLP-DL--PLSLESIVAGNNILE  228 (454)
T ss_dssp             SCCSCCC-CCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCC-CC--CTTCCEEECCSSCCS
T ss_pred             CcCcccC-CCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCC-CC--cCcccEEECcCCcCC
Confidence            7664311 123477888888887773 55 4777888888888888877532 22  247778888887654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.82  E-value=5.8e-19  Score=140.47  Aligned_cols=186  Identities=22%  Similarity=0.307  Sum_probs=86.6

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcc
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAAS   82 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~   82 (212)
                      ++++|++|++++|.+.+ +|..   .++|++|++++|.+. ..| .+..+++|++|++++|.+. .+|..++++++|+++
T Consensus       193 ~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~  265 (454)
T 1jl5_A          193 NLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVR  265 (454)
T ss_dssp             TCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECC
T ss_pred             CCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccccccccCEEECC
Confidence            34444444444444441 2221   134555555555544 333 3566677777777777666 345455566666666


Q ss_pred             cceeeeeCCCcccCCCcccEEEccCCcccc--cCCccc-------------ccC-CcccEEEccCCCCCCcccCCccccc
Q 042715           83 SNNFRGSIPQTCKNEANLAMIELSSNLLEG--RVPKSL-------------ASC-TELKFLNLVSEGIFSSTLGNLIVLE  146 (212)
Q Consensus        83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~-------------~~~-~~L~~L~l~~n~~~~~~~~~~~~L~  146 (212)
                      +|.+.+ +|..   .++|++|++++|.+++  ..|..+             ..+ ++|+.|++++|.+.... ..+++|+
T Consensus       266 ~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp-~~~~~L~  340 (454)
T 1jl5_A          266 DNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP-ALPPRLE  340 (454)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCC-CCCTTCC
T ss_pred             CCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccc-ccCCcCC
Confidence            666553 2222   2455566666655553  111100             111 35556666665543311 1245666


Q ss_pred             EEEccCCeeeeecChhccCCCCccEEEeeCCeeec--CCCCC-ccc-------------ccccccccccCCCcc
Q 042715          147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG--PIPQG-KQF-------------NTFETSSFDGNPGLC  204 (212)
Q Consensus       147 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~-~~~-------------~~l~~l~l~~n~~~~  204 (212)
                      +|++++|+++ .+|.   .+++|++|++++|++.+  .+|.. ..+             ++++.+++++|+...
T Consensus       341 ~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          341 RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             EEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            6666666666 4444   35667777777777665  33332 233             556677777776654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=5.1e-19  Score=126.74  Aligned_cols=149  Identities=23%  Similarity=0.226  Sum_probs=86.4

Q ss_pred             ceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEcccceeeeeCCCcccCCCcccEEEccCC
Q 042715           32 STLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSN  108 (212)
Q Consensus        32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  108 (212)
                      +.++.+++.++ ..|..+  .+++++|++++|.+....+   ..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            45666666666 333322  3577788888877763222   23345666666666666443444556666666666666


Q ss_pred             cccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCC
Q 042715          109 LLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI  183 (212)
Q Consensus       109 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~  183 (212)
                      .+.+..+..+..+++|+.|++++|.+..   ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence            6664444445566666666666665532   22455666666666666666444444556666666666666555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=4.2e-19  Score=145.53  Aligned_cols=171  Identities=24%  Similarity=0.341  Sum_probs=140.0

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEE
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIA   80 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~   80 (212)
                      .+++|+.|+++++.+. .++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.. ++  ..+++|++|+
T Consensus        41 ~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~  115 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLS  115 (605)
T ss_dssp             HHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEE
T ss_pred             cCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEE
Confidence            4678899999999987 444 58889999999999999885444  8899999999999998873 33  3456789999


Q ss_pred             cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec
Q 042715           81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI  159 (212)
Q Consensus        81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~  159 (212)
                      +++|.+.. + ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.. ..+..+++|+.|+|++|.+.+ +
T Consensus       116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-l  190 (605)
T 1m9s_A          116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-L  190 (605)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-C
T ss_pred             ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC-C
Confidence            99999875 2 4678889999999999998843  578889999999999998754 347889999999999999984 4


Q ss_pred             ChhccCCCCccEEEeeCCeeecCCC
Q 042715          160 PQQFGELTSLEFFDVSDNLVIGPIP  184 (212)
Q Consensus       160 ~~~~~~~~~L~~L~l~~n~~~~~~~  184 (212)
                       ..+..+++|+.|+|++|.+.+.+.
T Consensus       191 -~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          191 -RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             -GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             -hHHccCCCCCEEEccCCcCcCCcc
Confidence             458889999999999999986543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.81  E-value=3.6e-20  Score=137.38  Aligned_cols=169  Identities=20%  Similarity=0.300  Sum_probs=133.7

Q ss_pred             ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceEEcc
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPIAAS   82 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l~l~   82 (212)
                      +.++..++++++.+. .++ .+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+.+.. ...+++|++|+++
T Consensus        18 l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence            445666777777777 333 57788999999999998883 44 6788899999999999887322 2345677899999


Q ss_pred             cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecCh
Q 042715           83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQ  161 (212)
Q Consensus        83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~  161 (212)
                      +|.+.. ++. +.. ++|++|++++|.+.+ .+ .+..+++|+.|++++|.+.. ..+..+++|+.|++++|.+.+.  .
T Consensus        94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~  166 (263)
T 1xeu_A           94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--G  166 (263)
T ss_dssp             SSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--T
T ss_pred             CCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--H
Confidence            998874 333 223 889999999999984 43 58889999999999998854 4677889999999999999854  6


Q ss_pred             hccCCCCccEEEeeCCeeecCC
Q 042715          162 QFGELTSLEFFDVSDNLVIGPI  183 (212)
Q Consensus       162 ~~~~~~~L~~L~l~~n~~~~~~  183 (212)
                      .+..+++|++|++++|++...+
T Consensus       167 ~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEECCC
T ss_pred             HhccCCCCCEEeCCCCcccCCc
Confidence            6889999999999999998664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=1.2e-18  Score=126.66  Aligned_cols=146  Identities=21%  Similarity=0.222  Sum_probs=90.7

Q ss_pred             ecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEccc
Q 042715            7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAASS   83 (212)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l~~   83 (212)
                      -+.++.+++.+. .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+....+   ..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            356777777776 5665443  788888888888887777888888888888888888762221   2234556666666


Q ss_pred             ceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeee
Q 042715           84 NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLS  156 (212)
Q Consensus        84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~  156 (212)
                      |.++...+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+..   ..+..+++|+.|++++|.+.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            6655443444555566666666666665 455555555555555555554422   23445555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=1.6e-19  Score=135.84  Aligned_cols=184  Identities=20%  Similarity=0.272  Sum_probs=149.1

Q ss_pred             EccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceEEcccceeeee
Q 042715           11 KLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPIAASSNNFRGS   89 (212)
Q Consensus        11 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l~l~~n~~~~~   89 (212)
                      .+....+....  .+..+++|++|++++|.+... + .+..+++|++|++++|.+.+.. ...+++|++|++++|.+.. 
T Consensus        30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-  104 (291)
T 1h6t_A           30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-  104 (291)
T ss_dssp             HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-
T ss_pred             HhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-
Confidence            34444444222  346789999999999998843 3 5888999999999999998432 2456678999999999875 


Q ss_pred             CCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccCCCC
Q 042715           90 IPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTS  168 (212)
Q Consensus        90 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~  168 (212)
                      + ..+..+++|++|++++|.+.+ . ..+..+++|+.|++++|.+.. ..+..+++|++|++++|.+.+..+  +..+++
T Consensus       105 ~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~  179 (291)
T 1h6t_A          105 L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTK  179 (291)
T ss_dssp             G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCc
Confidence            3 348889999999999999984 4 468899999999999998854 567789999999999999985444  889999


Q ss_pred             ccEEEeeCCeeecCCCCCcccccccccccccCCCccC
Q 042715          169 LEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCG  205 (212)
Q Consensus       169 L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~  205 (212)
                      |++|++++|.+.+. +....+++++.+++.+|+....
T Consensus       180 L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          180 LQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEECC
T ss_pred             cCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccCC
Confidence            99999999999864 4567889999999999986553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=6.9e-21  Score=145.89  Aligned_cols=174  Identities=19%  Similarity=0.220  Sum_probs=90.5

Q ss_pred             ceeecEEEccCCccccc-cCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccc-cceec-CC---ccccCCc
Q 042715            4 CFDIIYIKLSGNQLTGP-IPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK-QLTGR-IP---SEIGKLK   77 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~---~~l~~l~   77 (212)
                      +++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++. ++   ..+++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            45566666666655433 4455555666666666666555444445555666666666665 34321 11   2344556


Q ss_pred             eEEcccc-eeeee-CCCcccCCC-cccEEEccCCc--cc-ccCCcccccCCcccEEEccCCCC-C---CcccCCcccccE
Q 042715           78 PIAASSN-NFRGS-IPQTCKNEA-NLAMIELSSNL--LE-GRVPKSLASCTELKFLNLVSEGI-F---SSTLGNLIVLES  147 (212)
Q Consensus        78 ~l~l~~n-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~n~~-~---~~~~~~~~~L~~  147 (212)
                      +|++++| .++.. ++..+..++ +|++|++++|.  ++ +.++..+..+++|+.|++++|.. .   ...+..+++|++
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~  251 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  251 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence            6666665 44432 233344555 66666666662  22 23334445556666666666652 2   133445566666


Q ss_pred             EEccCCe-eeeecChhccCCCCccEEEeeCC
Q 042715          148 LDLSNNK-LSGQIPQQFGELTSLEFFDVSDN  177 (212)
Q Consensus       148 L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n  177 (212)
                      |++++|. +.+.....+..+++|++|++++|
T Consensus       252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            6666653 32222224555666666666666

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=2.4e-21  Score=148.41  Aligned_cols=195  Identities=18%  Similarity=0.178  Sum_probs=145.8

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeec-CCCCCCCCCCccEEEcccccceecCCc---cccCCceEE
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGC-IPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIA   80 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~   80 (212)
                      ++++.++++++.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+.   .+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5788888888888855555 45689999999999987744 666678889999999999887644443   356788999


Q ss_pred             cccc-eeee-eCCCcccCCCcccEEEccCC-ccccc-CCcccccCC-cccEEEccCCC--CC----CcccCCcccccEEE
Q 042715           81 ASSN-NFRG-SIPQTCKNEANLAMIELSSN-LLEGR-VPKSLASCT-ELKFLNLVSEG--IF----SSTLGNLIVLESLD  149 (212)
Q Consensus        81 l~~n-~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~n~--~~----~~~~~~~~~L~~L~  149 (212)
                      +++| .++. .++..+..+++|++|++++| .+++. .+..+..++ +|++|++++|.  +.    +..+..+++|++|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            9988 4554 24455677888999999998 77743 456677888 99999999984  32    24456788999999


Q ss_pred             ccCCe-eeeecChhccCCCCccEEEeeCCe-eecC-CCCCcccccccccccccC
Q 042715          150 LSNNK-LSGQIPQQFGELTSLEFFDVSDNL-VIGP-IPQGKQFNTFETSSFDGN  200 (212)
Q Consensus       150 l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-~~~~-~~~~~~~~~l~~l~l~~n  200 (212)
                      +++|. +++..+..+..+++|++|++++|. +... +.....+++++.+++.+|
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            99998 666677788888999999999985 2211 112346788888888877

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=1.6e-21  Score=151.07  Aligned_cols=62  Identities=23%  Similarity=0.180  Sum_probs=32.9

Q ss_pred             eeecEEEccCCccccccC----ccccccC-CCceEEccCCeeeecCCCCCCCC-----CCccEEEcccccce
Q 042715            5 FDIIYIKLSGNQLTGPIP----YWLENLE-NISTLWLEKNQLTGCIPFEIGNL-----KNLSTLCLEHKQLT   66 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~   66 (212)
                      ++|++|++++|.+....+    ..|..++ +|++|++++|.+....+..+..+     ++|++|++++|.++
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            346666666666554333    4455555 56666666665554333333332     55555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=7.4e-19  Score=130.33  Aligned_cols=148  Identities=18%  Similarity=0.269  Sum_probs=125.2

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcc
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAAS   82 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~   82 (212)
                      .+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.......+|++|+++
T Consensus        39 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~  114 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD  114 (263)
T ss_dssp             HHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECC
T ss_pred             hcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccccCcccEEEcc
Confidence            5688999999999998 555 68899999999999999995444  8999999999999999984222222789999999


Q ss_pred             cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeee
Q 042715           83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQ  158 (212)
Q Consensus        83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~  158 (212)
                      +|.+...  ..+..+++|++|++++|.+.+ .+ .++.+++|+.|++++|.+.. ..+..+++|+.|++++|.+.+.
T Consensus       115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          115 NNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence            9998853  358889999999999999984 44 68899999999999998854 5678899999999999999843

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.79  E-value=1.7e-21  Score=152.13  Aligned_cols=201  Identities=18%  Similarity=0.148  Sum_probs=154.5

Q ss_pred             CceeecEEEccCCcccccc----CccccccCCCceEEccCCeee---ecCCCC-------CCCCCCccEEEcccccceec
Q 042715            3 LCFDIIYIKLSGNQLTGPI----PYWLENLENISTLWLEKNQLT---GCIPFE-------IGNLKNLSTLCLEHKQLTGR   68 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~---~~~~~~-------~~~l~~L~~L~l~~~~~~~~   68 (212)
                      .+++|++|++++|.+....    +..+..+++|++|++++|.+.   +..|..       +..+++|++|++++|.+...
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            4688999999999988553    344778999999999997433   333333       36889999999999998752


Q ss_pred             ----CC---ccccCCceEEcccceeeeeCCCc----ccCC---------CcccEEEccCCccc-ccCC---cccccCCcc
Q 042715           69 ----IP---SEIGKLKPIAASSNNFRGSIPQT----CKNE---------ANLAMIELSSNLLE-GRVP---KSLASCTEL  124 (212)
Q Consensus        69 ----~~---~~l~~l~~l~l~~n~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~-~~~~---~~~~~~~~L  124 (212)
                          ++   ..+++|++|++++|.+....+..    +..+         ++|++|++++|.+. ...+   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence                33   34568899999999986432222    3333         79999999999886 3333   356688899


Q ss_pred             cEEEccCCCCCC--------cccCCcccccEEEccCCeee----eecChhccCCCCccEEEeeCCeeecC----CCCC--
Q 042715          125 KFLNLVSEGIFS--------STLGNLIVLESLDLSNNKLS----GQIPQQFGELTSLEFFDVSDNLVIGP----IPQG--  186 (212)
Q Consensus       125 ~~L~l~~n~~~~--------~~~~~~~~L~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~--  186 (212)
                      +.|++++|.+..        ..+..+++|++|++++|.++    ..++..+..+++|++|++++|.+.+.    ++..  
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            999999998763        26778899999999999995    46788889999999999999998754    2222  


Q ss_pred             -cccccccccccccCCCc
Q 042715          187 -KQFNTFETSSFDGNPGL  203 (212)
Q Consensus       187 -~~~~~l~~l~l~~n~~~  203 (212)
                       ..+++++.|++.+|...
T Consensus       270 ~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             TCSSCCCCEEECCSSCCB
T ss_pred             hccCCCeEEEECcCCcCC
Confidence             23788999999999864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=4.1e-18  Score=131.37  Aligned_cols=194  Identities=13%  Similarity=0.104  Sum_probs=108.5

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeee-cCCCCCCCCCCccEE-EcccccceecCCc---cccCCceE
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTG-CIPFEIGNLKNLSTL-CLEHKQLTGRIPS---EIGKLKPI   79 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L-~l~~~~~~~~~~~---~l~~l~~l   79 (212)
                      +++++|++++|.++...+++|.++++|++|++++|.+.+ ..+.+|..+++++.+ .+.+|.+....+.   .+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            457777777777774444567777777777777777643 344566777776653 4445666533332   34566777


Q ss_pred             EcccceeeeeCCCcccCCCcccEEEccC-CcccccCCcccccCC-cccEEEccCCCCCC--cccCCcccccEEEccC-Ce
Q 042715           80 AASSNNFRGSIPQTCKNEANLAMIELSS-NLLEGRVPKSLASCT-ELKFLNLVSEGIFS--STLGNLIVLESLDLSN-NK  154 (212)
Q Consensus        80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~--~~~~~~~~L~~L~l~~-n~  154 (212)
                      ++++|.+....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.+..  .......+++.+++++ |.
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            7777766544333344444555555544 234433333444433 46667777766532  2233445666676654 45


Q ss_pred             eeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccC
Q 042715          155 LSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGN  200 (212)
Q Consensus       155 i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n  200 (212)
                      +....+++|..+++|++|++++|+++..++.  .+..+++|...++
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~  233 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST  233 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC
T ss_pred             ccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC
Confidence            5533334566677777777777776644432  2334444444333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=1.9e-19  Score=147.54  Aligned_cols=187  Identities=20%  Similarity=0.290  Sum_probs=152.9

Q ss_pred             cEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceEEccccee
Q 042715            8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPIAASSNNF   86 (212)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l~l~~n~~   86 (212)
                      ..+.+..+.+....  .+..+++|+.|+++++.+.. .+ .+..+++|+.|++++|.+.+..+ ..+++|+.|++++|.+
T Consensus        24 ~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           24 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             HHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCC
Confidence            33445555555333  25678999999999999884 33 68899999999999999884332 4567889999999998


Q ss_pred             eeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccC
Q 042715           87 RGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGE  165 (212)
Q Consensus        87 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  165 (212)
                      .. + ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.. ..+..+++|+.|+|++|.+.+..|  +..
T Consensus       100 ~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~  173 (605)
T 1m9s_A          100 KD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAG  173 (605)
T ss_dssp             CC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             CC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hcc
Confidence            74 3 378889999999999999984 4 468899999999999998855 567889999999999999986555  889


Q ss_pred             CCCccEEEeeCCeeecCCCCCcccccccccccccCCCccC
Q 042715          166 LTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCG  205 (212)
Q Consensus       166 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~  205 (212)
                      +++|+.|+|++|.+.+. +....+++|+.|++.+|+....
T Consensus       174 l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          174 LTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence            99999999999999865 5667889999999999987554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=8.3e-19  Score=135.77  Aligned_cols=170  Identities=22%  Similarity=0.169  Sum_probs=140.0

Q ss_pred             cEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCC-CCCCccEEEcccccceecCCc---cccCCceEEccc
Q 042715            8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIG-NLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAASS   83 (212)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~~   83 (212)
                      +.++.+++.+. .+|..+.  +.+++|++++|.++...+..+. .+++|+.|++++|.+....+.   .+++|++|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            57888888888 5676553  4689999999999988887787 899999999999999854433   456789999999


Q ss_pred             ceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---ccc---CCcccccEEEccCCeeee
Q 042715           84 NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STL---GNLIVLESLDLSNNKLSG  157 (212)
Q Consensus        84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~---~~~~~L~~L~l~~n~i~~  157 (212)
                      |.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..   ..+   ..+++|+.|+|++|++.+
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            99987777778899999999999999997778889999999999999998854   223   468899999999999985


Q ss_pred             ecChhccCCCC--ccEEEeeCCeee
Q 042715          158 QIPQQFGELTS--LEFFDVSDNLVI  180 (212)
Q Consensus       158 ~~~~~~~~~~~--L~~L~l~~n~~~  180 (212)
                      ..+..+..++.  ++.|++++|++.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            55567777877  488999999885

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=4.6e-19  Score=125.97  Aligned_cols=147  Identities=14%  Similarity=0.148  Sum_probs=124.2

Q ss_pred             CCCCCccEEEcccccceecCC--ccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEE
Q 042715           50 GNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL  127 (212)
Q Consensus        50 ~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  127 (212)
                      ..+++|+.|++++|.+. .++  ..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..+..++.+++|+.|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            56789999999999988 444  34678899999999664  23477889999999999999997778889999999999


Q ss_pred             EccCCCCCC---cccCCcccccEEEccCCe-eeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCC
Q 042715          128 NLVSEGIFS---STLGNLIVLESLDLSNNK-LSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPG  202 (212)
Q Consensus       128 ~l~~n~~~~---~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~  202 (212)
                      ++++|.+..   ..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+.+.. ....+++++++++.+|+.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence            999998863   567889999999999998 76 555 6889999999999999998644 667899999999999985

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=1.5e-18  Score=133.76  Aligned_cols=199  Identities=18%  Similarity=0.162  Sum_probs=149.3

Q ss_pred             CCCceeecEEEccCCccccccC-ccccccCCCce-EEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cC
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIP-YWLENLENIST-LWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GK   75 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~   75 (212)
                      |+++++|++|++++|.+.+.+| ++|.+++++++ +.+.+|++....++.|..+++|++|++++|.+....+..+   .+
T Consensus        50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  129 (350)
T 4ay9_X           50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ  129 (350)
T ss_dssp             STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred             HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence            5789999999999999865554 57889999876 5567788998888999999999999999999873333222   24


Q ss_pred             CceEEccc-ceeeeeCCCcccCCC-cccEEEccCCcccccCCcccccCCcccEEEccC-CCCC--C-cccCCcccccEEE
Q 042715           76 LKPIAASS-NNFRGSIPQTCKNEA-NLAMIELSSNLLEGRVPKSLASCTELKFLNLVS-EGIF--S-STLGNLIVLESLD  149 (212)
Q Consensus        76 l~~l~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~--~-~~~~~~~~L~~L~  149 (212)
                      +..+++.+ +.+....+..+.... .++.|++++|.++ .++.......+++.+++.+ |.+.  + ..|.++++|+.|+
T Consensus       130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld  208 (350)
T 4ay9_X          130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  208 (350)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred             hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence            46677755 445544445555554 6899999999999 4554444567899999986 4442  2 5678999999999


Q ss_pred             ccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715          150 LSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC  204 (212)
Q Consensus       150 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~  204 (212)
                      +++|+++ .+|.  ..+.+|+.|...++.-.+.+|....+++++.+++. +++.|
T Consensus       209 Ls~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~-~~~~c  259 (350)
T 4ay9_X          209 ISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT-YPSHC  259 (350)
T ss_dssp             CTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS-CHHHH
T ss_pred             cCCCCcC-ccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCC-CCccc
Confidence            9999998 5554  23566777777777666677877889999999986 55555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=9.4e-22  Score=160.18  Aligned_cols=190  Identities=15%  Similarity=0.132  Sum_probs=145.1

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCe-------------eeecCCCCCCCCCCccEEE-ccccccee
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQ-------------LTGCIPFEIGNLKNLSTLC-LEHKQLTG   67 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~   67 (212)
                      ..+++|+.|++++|.+. .+|+.++.+++|++|+++++.             ..+..|..+..+++|+.|+ ++.+.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            45677888889988887 788888889999999887664             2334455566777777777 5555332 


Q ss_pred             cCC---------cc--ccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC
Q 042715           68 RIP---------SE--IGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS  136 (212)
Q Consensus        68 ~~~---------~~--l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  136 (212)
                      .++         ..  ...++.|++++|.++. +|. ++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.+..
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence            111         11  1257889999998874 555 888899999999999998 778889999999999999998743


Q ss_pred             -cccCCcccccEEEccCCeeeeec-ChhccCCCCccEEEeeCCeeecCCCCCc----ccccccccc
Q 042715          137 -STLGNLIVLESLDLSNNKLSGQI-PQQFGELTSLEFFDVSDNLVIGPIPQGK----QFNTFETSS  196 (212)
Q Consensus       137 -~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~l~~l~  196 (212)
                       ..+..+++|+.|++++|++++.. |..+..+++|+.|++++|.+++.++...    .+++++.|+
T Consensus       501 lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence             36778899999999999998665 8889999999999999999988777653    256666653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=3.2e-18  Score=139.17  Aligned_cols=161  Identities=22%  Similarity=0.278  Sum_probs=133.4

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSN   84 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n   84 (212)
                      ++|++|++++|.+. .+|   ..+++|++|++++|.+++ +|. +..  +|++|++++|.+++ +|..+++|++|++++|
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPELPALLEYINADNN  150 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCCCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCCcCccccEEeCCCC
Confidence            57999999999998 677   457999999999999996 565 554  99999999999984 6667788999999999


Q ss_pred             eeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCcc-cCCcccc-------cEEEccCCeee
Q 042715           85 NFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSST-LGNLIVL-------ESLDLSNNKLS  156 (212)
Q Consensus        85 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L-------~~L~l~~n~i~  156 (212)
                      .++. +|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.+.... +..  +|       +.|++++|.|+
T Consensus       151 ~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          151 QLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCC
T ss_pred             ccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcce
Confidence            9985 554   46799999999999995 666 55  89999999999885421 333  67       99999999998


Q ss_pred             eecChhccCCCCccEEEeeCCeeecCCCC
Q 042715          157 GQIPQQFGELTSLEFFDVSDNLVIGPIPQ  185 (212)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  185 (212)
                       .+|..+..+++|++|++++|++.+.+|.
T Consensus       221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          221 -HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             -CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             -ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence             6888888899999999999999875543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=2e-17  Score=135.82  Aligned_cols=54  Identities=22%  Similarity=0.077  Sum_probs=27.5

Q ss_pred             ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715          143 IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL  203 (212)
Q Consensus       143 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~  203 (212)
                      ++|+.|++++|.++ .+|   ..+++|++|++++|.+...++   .+++++.|++.+|...
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC
Confidence            34555555555554 233   234555566666665553222   4455666666666544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=1.5e-20  Score=145.62  Aligned_cols=196  Identities=17%  Similarity=0.121  Sum_probs=140.3

Q ss_pred             EEEccCCccccccCccccccCCCceEEccCCeeeecCC----CCCCCCC-CccEEEcccccceecCCcc---c-----cC
Q 042715            9 YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP----FEIGNLK-NLSTLCLEHKQLTGRIPSE---I-----GK   75 (212)
Q Consensus         9 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~---l-----~~   75 (212)
                      ++.++++.+.+.+|..+...++|++|++++|.+....+    .++..++ +|++|++++|.+....+..   +     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788999998888777666779999999999986555    6778888 8999999999998554432   2     67


Q ss_pred             CceEEcccceeeeeCCCc----ccCC-CcccEEEccCCcccccCCcccc----c-CCcccEEEccCCCCCC-------cc
Q 042715           76 LKPIAASSNNFRGSIPQT----CKNE-ANLAMIELSSNLLEGRVPKSLA----S-CTELKFLNLVSEGIFS-------ST  138 (212)
Q Consensus        76 l~~l~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~L~l~~n~~~~-------~~  138 (212)
                      |++|++++|.+....+..    +... ++|++|++++|.+.+..+..+.    . ..+|++|++++|.+..       ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            899999999987544432    3334 7899999999998855443332    3 3589999999987753       22


Q ss_pred             cCCcc-cccEEEccCCeeeeecCh----hccCC-CCccEEEeeCCeeecCCC----C-Ccc-cccccccccccCCCcc
Q 042715          139 LGNLI-VLESLDLSNNKLSGQIPQ----QFGEL-TSLEFFDVSDNLVIGPIP----Q-GKQ-FNTFETSSFDGNPGLC  204 (212)
Q Consensus       139 ~~~~~-~L~~L~l~~n~i~~~~~~----~~~~~-~~L~~L~l~~n~~~~~~~----~-~~~-~~~l~~l~l~~n~~~~  204 (212)
                      +...+ +|++|++++|++.+..+.    .+... ++|++|++++|.+.+...    . ... .++++++++++|....
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            23343 788888888888755443    33444 488888888888875221    1 112 2478888888887543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=5.4e-18  Score=120.01  Aligned_cols=110  Identities=23%  Similarity=0.338  Sum_probs=77.6

Q ss_pred             CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEe
Q 042715           98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDV  174 (212)
Q Consensus        98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  174 (212)
                      +++++|++++|.+. .+|..+..+++|+.|++++|.+..   ..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            35666677776666 555666666777777777776533   44667777777888888777666667777888888888


Q ss_pred             eCCeeecCCCC-CcccccccccccccCCCccCCCC
Q 042715          175 SDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       175 ~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      ++|.+...++. ...+++++.+++.+||+.|+|.+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            88888766554 33677788888888888887764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=5e-18  Score=120.10  Aligned_cols=128  Identities=23%  Similarity=0.280  Sum_probs=77.7

Q ss_pred             ceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCC-cccCCCcccEEEccCCcc
Q 042715           32 STLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQ-TCKNEANLAMIELSSNLL  110 (212)
Q Consensus        32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~-~~~~~~~L~~L~l~~~~~  110 (212)
                      ++++++++.++ .+|..+.  .++++|++++|.+.                     ...+. .+..+++|++|++++|.+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~---------------------~~~~~~~~~~l~~L~~L~Ls~N~l   66 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELG---------------------RISSDGLFGRLPHLVKLELKRNQL   66 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCC---------------------SBCCSCSGGGCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCC---------------------ccCCccccccCCCCCEEECCCCCC
Confidence            56666666665 3443332  25666666666554                     22221 245566666666666666


Q ss_pred             cccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCC
Q 042715          111 EGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI  183 (212)
Q Consensus       111 ~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~  183 (212)
                      ++..|..+..+++|+.|++++|.+..   ..+.++++|++|++++|++++..|..+..+++|++|++++|++.+..
T Consensus        67 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            65556666666666666666666532   33556667777777777777666666777777777777777765443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=8.3e-18  Score=118.98  Aligned_cols=128  Identities=18%  Similarity=0.276  Sum_probs=105.7

Q ss_pred             eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCc-ccccCCcccEEEccCCCCC---CcccCCcccccEEEccCC
Q 042715           78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPK-SLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNN  153 (212)
Q Consensus        78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n  153 (212)
                      +++++++.+. .+|..+.  .++++|++++|.+.+..+. .++.+++|+.|++++|.+.   +..+.++++|++|++++|
T Consensus        12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            4444444443 4444443  3899999999999855543 4889999999999999874   467889999999999999


Q ss_pred             eeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715          154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      ++.+..+..+..+++|++|++++|++.+.+|.. ..+++++++++.+|++.|+|++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            999888888999999999999999999887654 4789999999999999999975

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.73  E-value=1.8e-20  Score=149.29  Aligned_cols=86  Identities=15%  Similarity=-0.002  Sum_probs=41.0

Q ss_pred             cccCCcccEEEccCCCCCC--------cccCCcccccEEEccCCeeeee----cChhccCCCCccEEEeeCCeeecCCCC
Q 042715          118 LASCTELKFLNLVSEGIFS--------STLGNLIVLESLDLSNNKLSGQ----IPQQFGELTSLEFFDVSDNLVIGPIPQ  185 (212)
Q Consensus       118 ~~~~~~L~~L~l~~n~~~~--------~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~  185 (212)
                      +..+++|++|++++|.+..        ..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            3344555555555554322        1112345555666665555532    344445556666666666655422111


Q ss_pred             Cc------ccccccccccccCCCc
Q 042715          186 GK------QFNTFETSSFDGNPGL  203 (212)
Q Consensus       186 ~~------~~~~l~~l~l~~n~~~  203 (212)
                      ..      ..++++++++.+|...
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhccCCccceeeEcCCCCCc
Confidence            00      1135666666666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.72  E-value=1.1e-20  Score=150.65  Aligned_cols=38  Identities=13%  Similarity=0.184  Sum_probs=20.6

Q ss_pred             eeecEEEccCCccccc----cCccccccCCCceEEccCCeee
Q 042715            5 FDIIYIKLSGNQLTGP----IPYWLENLENISTLWLEKNQLT   42 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~   42 (212)
                      ++|++|++++|.+...    ++..+..+++|++|++++|.+.
T Consensus       142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            4566666666655532    2344445556666666665544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.72  E-value=2.8e-17  Score=113.78  Aligned_cols=133  Identities=24%  Similarity=0.226  Sum_probs=92.4

Q ss_pred             cCCCceEEccCCeee-ecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEcc
Q 042715           28 LENISTLWLEKNQLT-GCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELS  106 (212)
Q Consensus        28 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~  106 (212)
                      .++|++|++++|.+. +..|..+..+++|++|++++|.+..                      . ..+..+++|++|+++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~----------------------~-~~~~~l~~L~~L~Ls   79 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----------------------V-SNLPKLPKLKKLELS   79 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC----------------------C-SSCCCCSSCCEEEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC----------------------h-hhhccCCCCCEEECc
Confidence            366777777777766 4555556666777777777666551                      1 344556777777887


Q ss_pred             CCcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEccCCeeeeecC---hhccCCCCccEEEeeCCee
Q 042715          107 SNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSGQIP---QQFGELTSLEFFDVSDNLV  179 (212)
Q Consensus       107 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~~  179 (212)
                      +|.+.+..|..+..+++|+.|++++|.+..    ..+..+++|++|++++|.+.+..+   ..+..+++|++|++++|.+
T Consensus        80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             SCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             CCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            777775566666667777888877776643    456677888888888888874433   3778888888888888877


Q ss_pred             ecCC
Q 042715          180 IGPI  183 (212)
Q Consensus       180 ~~~~  183 (212)
                      ...+
T Consensus       160 ~~~~  163 (168)
T 2ell_A          160 QEAP  163 (168)
T ss_dssp             CBCC
T ss_pred             hhcc
Confidence            6443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=8.7e-17  Score=109.06  Aligned_cols=126  Identities=25%  Similarity=0.295  Sum_probs=83.7

Q ss_pred             cCCCceEEccCCeee-ecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEcc
Q 042715           28 LENISTLWLEKNQLT-GCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELS  106 (212)
Q Consensus        28 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~  106 (212)
                      .+++++|++++|.+. +..|..+..+++|++|++++|.+...                       ..+..+++|++|+++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~l~~L~~L~Ls   72 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----------------------ANLPKLNKLKKLELS   72 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-----------------------TTCCCCTTCCEEECC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-----------------------hhhhcCCCCCEEECC
Confidence            366777777777776 45666667777777777777766511                       234455677777777


Q ss_pred             CCcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEccCCeeeeecC---hhccCCCCccEEEeeC
Q 042715          107 SNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSGQIP---QQFGELTSLEFFDVSD  176 (212)
Q Consensus       107 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~  176 (212)
                      +|.+.+..|..+..+++|+.|++++|.+..    ..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            777775455555566777777777776643    445667777778888777774444   3667777777777653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=1.1e-16  Score=110.72  Aligned_cols=131  Identities=21%  Similarity=0.168  Sum_probs=88.5

Q ss_pred             CceeecEEEccCCccc-cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEc
Q 042715            3 LCFDIIYIKLSGNQLT-GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAA   81 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l   81 (212)
                      ..++|++|++++|.+. +.+|..+..+++|++|++++|.+...  ..+..+++|++|++++|.+...++.          
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~----------   89 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM----------   89 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH----------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH----------
Confidence            3578999999999997 67888889999999999999999854  7889999999999999998743432          


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCCcccccC-CcccccCCcccEEEccCCCCCC--c----ccCCcccccEEEccCCe
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRV-PKSLASCTELKFLNLVSEGIFS--S----TLGNLIVLESLDLSNNK  154 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~--~----~~~~~~~L~~L~l~~n~  154 (212)
                                 .+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+..  .    .+..+++|++|++++|.
T Consensus        90 -----------~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           90 -----------LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             -----------HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             -----------HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence                       2223345555555555554211 1344455555555555554422  1    34455666666666665


Q ss_pred             ee
Q 042715          155 LS  156 (212)
Q Consensus       155 i~  156 (212)
                      +.
T Consensus       159 ~~  160 (168)
T 2ell_A          159 DQ  160 (168)
T ss_dssp             SC
T ss_pred             hh
Confidence            54

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=3.3e-16  Score=109.26  Aligned_cols=129  Identities=22%  Similarity=0.218  Sum_probs=76.7

Q ss_pred             ccEEEcccccceecCCcc-ccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC
Q 042715           55 LSTLCLEHKQLTGRIPSE-IGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG  133 (212)
Q Consensus        55 L~~L~l~~~~~~~~~~~~-l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  133 (212)
                      .+.++++++.+. .+|.. .+++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCc-cCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            456777777776 44433 3456777777776664444455666677777777776664444445666666666666665


Q ss_pred             CCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCC
Q 042715          134 IFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP  184 (212)
Q Consensus       134 ~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  184 (212)
                      +..   ..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            532   234555666666666666654434444556666666666666654443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=3e-16  Score=111.02  Aligned_cols=125  Identities=24%  Similarity=0.334  Sum_probs=83.1

Q ss_pred             ceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCccc
Q 042715           32 STLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE  111 (212)
Q Consensus        32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~  111 (212)
                      ++++++++.++ .+|..+  .+++++|++++|.++                      .+|..+..+++|++|++++|.++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~----------------------~ip~~~~~l~~L~~L~Ls~N~i~   67 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT----------------------LVPKELSNYKHLTLIDLSNNRIS   67 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC----------------------SCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc----------------------hhHHHhhcccCCCEEECCCCcCC
Confidence            45666666655 333322  245555555555554                      34455666677777777777777


Q ss_pred             ccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeec
Q 042715          112 GRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG  181 (212)
Q Consensus       112 ~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  181 (212)
                      +..+..|..+++|+.|++++|.+..   ..+.++++|++|++++|.+....+..+..+++|++|++++|++..
T Consensus        68 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            5555667777777777777776632   456777788888888888875555567778888888888887753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=2.2e-16  Score=107.06  Aligned_cols=126  Identities=17%  Similarity=0.178  Sum_probs=95.7

Q ss_pred             CceeecEEEccCCccc-cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccCCce
Q 042715            3 LCFDIIYIKLSGNQLT-GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGKLKP   78 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~   78 (212)
                      ..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..   +++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3578999999999998 67888889999999999999999855  78899999999999999998545542   556777


Q ss_pred             EEcccceeeee-CCCcccCCCcccEEEccCCcccccCC---cccccCCcccEEEcc
Q 042715           79 IAASSNNFRGS-IPQTCKNEANLAMIELSSNLLEGRVP---KSLASCTELKFLNLV  130 (212)
Q Consensus        79 l~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~  130 (212)
                      |++++|.+... .+..+..+++|++|++++|.+.+..+   ..+..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77777776642 22556667777777777777764333   356666677766654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=1.7e-17  Score=138.96  Aligned_cols=155  Identities=23%  Similarity=0.234  Sum_probs=78.8

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEE-----ccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccCC
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLW-----LEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGKL   76 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~-----l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l   76 (212)
                      +.++.|++.++.+.. .+..+.....|+.+.     +..+.+. ..++.+..++.|+.|++++|.+. .++..   +.+|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            446667777766663 333332333333332     2223333 45666777777777777777776 45543   3566


Q ss_pred             ceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCcccccEEEccCCe
Q 042715           77 KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLESLDLSNNK  154 (212)
Q Consensus        77 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~l~~n~  154 (212)
                      ++|++++|.++ .+|..+..+++|++|++++|.+. .+|..++.+++|+.|++++|.+  ++..+..+++|+.|+|++|.
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence            77777777777 66667777777777777777777 6677777777777777777766  34556777777777777777


Q ss_pred             eeeecChhcc
Q 042715          155 LSGQIPQQFG  164 (212)
Q Consensus       155 i~~~~~~~~~  164 (212)
                      +.+.+|..+.
T Consensus       328 l~~~~p~~~~  337 (727)
T 4b8c_D          328 LEKQFLKILT  337 (727)
T ss_dssp             CCSHHHHHHH
T ss_pred             cCCCChHHHh
Confidence            7766555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=2.9e-15  Score=114.43  Aligned_cols=191  Identities=13%  Similarity=0.079  Sum_probs=136.2

Q ss_pred             ceeecEEEccCCccc--------------------cccCccccc--------cCCCceEEccCCeeeecCCCCCCCCCCc
Q 042715            4 CFDIIYIKLSGNQLT--------------------GPIPYWLEN--------LENISTLWLEKNQLTGCIPFEIGNLKNL   55 (212)
Q Consensus         4 l~~L~~L~l~~~~~~--------------------~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~l~~L   55 (212)
                      +++|+.||+++|.+.                    ...+.+|.+        +++|+.+++.+ .+......+|..+++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            567999999998877                    223447778        99999999998 7777788889999999


Q ss_pred             cEEEcccccceecCCccccC---CceEEcccce------------e------e---------------------------
Q 042715           56 STLCLEHKQLTGRIPSEIGK---LKPIAASSNN------------F------R---------------------------   87 (212)
Q Consensus        56 ~~L~l~~~~~~~~~~~~l~~---l~~l~l~~n~------------~------~---------------------------   87 (212)
                      +.+++..+.+....+..|..   +.++......            +      .                           
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            99999998765222222322   1222211100            0      0                           


Q ss_pred             ----eeCC----Ccc-cCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCccccc-EEEccCCee
Q 042715           88 ----GSIP----QTC-KNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLE-SLDLSNNKL  155 (212)
Q Consensus        88 ----~~~~----~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~-~L~l~~n~i  155 (212)
                          +.+.    ..+ ..+++|+.+++++|.+....+.+|..+.+|+.+++.+|-.  ....|.++.+|+ .+++.+ .+
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l  285 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SV  285 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cc
Confidence                0000    000 1267899999999988866777899999999999998721  347789999999 999998 67


Q ss_pred             eeecChhccCCCCccEEEeeCCeeecCCCC-Ccccccccccc
Q 042715          156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSS  196 (212)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~  196 (212)
                      ....+.+|.++++|+.+++++|.+....+. ....++++.+.
T Consensus       286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          286 TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            657789999999999999999998766553 33566666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=2.6e-15  Score=104.64  Aligned_cols=110  Identities=25%  Similarity=0.259  Sum_probs=56.3

Q ss_pred             CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEe
Q 042715           98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDV  174 (212)
Q Consensus        98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  174 (212)
                      +++++|++++|.+.+..+..++.+++|+.|++++|.+..   ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            355555555555553333344555555555555554422   22345555555555555555433444455555555555


Q ss_pred             eCCeeecCCCCC-cccccccccccccCCCccCCC
Q 042715          175 SDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       175 ~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      ++|.+.+.++.. ..+++++++++.+|++.|+|+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            555555444332 245555555555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.5e-16  Score=133.28  Aligned_cols=155  Identities=17%  Similarity=0.216  Sum_probs=99.2

Q ss_pred             cCCCceEEccCCeeeecCCCCCCCCCCccEEEccc-----ccce--ecCCccccCCceEEcccceeeeeCCCcccCCCcc
Q 042715           28 LENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEH-----KQLT--GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANL  100 (212)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----~~~~--~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L  100 (212)
                      .+.++.|++.++.+.. .+..+....+|+.+.+..     +.+.  ......+..|+.|++++|.+. .++..+..+++|
T Consensus       172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CCccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            3668889998888774 343333333344433332     3222  112234567899999999988 677777789999


Q ss_pred             cEEEccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCe
Q 042715          101 AMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL  178 (212)
Q Consensus       101 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~  178 (212)
                      ++|++++|.+. .+|..++.+++|+.|++++|.+.  +..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence            99999999999 88888999999999999999874  567889999999999999998 788889999999999999999


Q ss_pred             eecCCCCC
Q 042715          179 VIGPIPQG  186 (212)
Q Consensus       179 ~~~~~~~~  186 (212)
                      +.+.+|..
T Consensus       328 l~~~~p~~  335 (727)
T 4b8c_D          328 LEKQFLKI  335 (727)
T ss_dssp             CCSHHHHH
T ss_pred             cCCCChHH
Confidence            98766653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=1.5e-15  Score=105.83  Aligned_cols=130  Identities=12%  Similarity=0.090  Sum_probs=85.4

Q ss_pred             ccccCCCceEEccCCeeeecCCCCCCCC-CCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEE
Q 042715           25 LENLENISTLWLEKNQLTGCIPFEIGNL-KNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMI  103 (212)
Q Consensus        25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L  103 (212)
                      +..+.+|++|++++|.+.. .+. +..+ ++|++|++++|.+.+                     .  ..+..+++|++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~---------------------~--~~l~~l~~L~~L   69 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK---------------------L--DGFPLLRRLKTL   69 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE---------------------E--CCCCCCSSCCEE
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc---------------------c--cccccCCCCCEE
Confidence            4566777777777777663 332 3333 366666666666552                     1  244556677777


Q ss_pred             EccCCcccccCCcccccCCcccEEEccCCCCCC--c--ccCCcccccEEEccCCeeeeecCh----hccCCCCccEEEee
Q 042715          104 ELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--S--TLGNLIVLESLDLSNNKLSGQIPQ----QFGELTSLEFFDVS  175 (212)
Q Consensus       104 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~--~~~~~~~L~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~  175 (212)
                      ++++|.+.+..+..+..+++|+.|++++|.+..  .  .+..+++|++|++++|.+. .+|.    .+..+++|++|+++
T Consensus        70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             ECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred             ECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCC
Confidence            777777774433444677777777777776643  2  4567778888888888887 4555    37788888888888


Q ss_pred             CCeee
Q 042715          176 DNLVI  180 (212)
Q Consensus       176 ~n~~~  180 (212)
                      +|...
T Consensus       149 ~n~~~  153 (176)
T 1a9n_A          149 KVKLK  153 (176)
T ss_dssp             ECCHH
T ss_pred             cCCHH
Confidence            88764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=5.2e-15  Score=103.10  Aligned_cols=126  Identities=11%  Similarity=0.145  Sum_probs=80.8

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCce
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKP   78 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~   78 (212)
                      .++.+|+.|++++|.+. .++......++|++|++++|.+++.  ..+..+++|++|++++|.+....+   ..+++|++
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            35788999999999998 5565333344999999999999965  688999999999999999873222   22345555


Q ss_pred             EEcccceeeeeCCC--cccCCCcccEEEccCCcccccCCcc----cccCCcccEEEccCC
Q 042715           79 IAASSNNFRGSIPQ--TCKNEANLAMIELSSNLLEGRVPKS----LASCTELKFLNLVSE  132 (212)
Q Consensus        79 l~l~~n~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n  132 (212)
                      |++++|.+. .++.  .+..+++|+.|++++|.+. ..|..    +..+++|+.|+++.|
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence            555555553 2222  3444555555555555554 23332    444444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=6.6e-15  Score=101.98  Aligned_cols=85  Identities=25%  Similarity=0.262  Sum_probs=40.5

Q ss_pred             CcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-Cccccccccccc
Q 042715          122 TELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSF  197 (212)
Q Consensus       122 ~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l  197 (212)
                      +.++.|++++|.+.   +..+.++++|++|++++|++.+..+..|..+++|++|++++|++.+.++. ...+++++.+++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            34444444444432   12344444555555555555433334444555555555555555544433 224455555555


Q ss_pred             ccCCCccCC
Q 042715          198 DGNPGLCGE  206 (212)
Q Consensus       198 ~~n~~~~~~  206 (212)
                      .+||+.|+|
T Consensus       110 ~~N~~~c~c  118 (170)
T 3g39_A          110 LNNPWDCAC  118 (170)
T ss_dssp             CSSCBCTTB
T ss_pred             CCCCCCCCc
Confidence            555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=8.5e-18  Score=136.96  Aligned_cols=177  Identities=18%  Similarity=0.125  Sum_probs=134.5

Q ss_pred             cccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccc-------------ceecCCc---cccCCceEE-cccceeee
Q 042715           26 ENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQ-------------LTGRIPS---EIGKLKPIA-ASSNNFRG   88 (212)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~---~l~~l~~l~-l~~n~~~~   88 (212)
                      ..+++|+.|++++|.+. .+|..+..+++|+.|+++++.             ..+..|.   .+++|+.|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            56789999999999988 678888899999999987764             2222222   234455565 33332211


Q ss_pred             eC--------CCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeee
Q 042715           89 SI--------PQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQ  158 (212)
Q Consensus        89 ~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~  158 (212)
                      ..        ...+. ...|+.|++++|.++ .+|. ++.+++|+.|++++|.+.  +..+..+++|+.|+|++|.+++ 
T Consensus       425 L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          425 LRSKFLLENSVLKME-YADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-  500 (567)
T ss_dssp             HHHHHHHHHHHHHHH-HTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred             hhhhhhhcccccccC-ccCceEEEecCCCCC-CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-
Confidence            00        00011 135899999999999 4676 999999999999999884  5678899999999999999984 


Q ss_pred             cChhccCCCCccEEEeeCCeeecCC--CCCcccccccccccccCCCccCCCC
Q 042715          159 IPQQFGELTSLEFFDVSDNLVIGPI--PQGKQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      +| .+..+++|++|++++|.+.+..  .....+++++.|++++|+....++.
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            66 7999999999999999999884  4455899999999999998766553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=1.8e-14  Score=100.15  Aligned_cols=101  Identities=20%  Similarity=0.233  Sum_probs=48.4

Q ss_pred             ceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCC
Q 042715           77 KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNN  153 (212)
Q Consensus        77 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n  153 (212)
                      +.++++++.+. .+|..+.  +++++|++++|.+.+..|..+..+++|+.|++++|.+..   ..+..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34555555543 3333332  455555555555554444455555555555555554422   12344455555555555


Q ss_pred             eeeeecChhccCCCCccEEEeeCCeee
Q 042715          154 KLSGQIPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      ++.+..+..+..+++|++|++++|++.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            554333333444555555555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=1.1e-17  Score=118.94  Aligned_cols=128  Identities=23%  Similarity=0.294  Sum_probs=60.2

Q ss_pred             cccCCCceEEccCCeeeecCCC------CCCCCCCccEEEcccccceecCC--ccccCCceEEcccceeeeeCCCcccCC
Q 042715           26 ENLENISTLWLEKNQLTGCIPF------EIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAASSNNFRGSIPQTCKNE   97 (212)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l~~n~~~~~~~~~~~~~   97 (212)
                      .....++.++++.+.+.+..|.      .+..+++|++|++++|.+.. ++  ..+++|++|++++|.+. .++..+..+
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            3444555555555555444333      44445555555555555442 22  01123333334333333 233333444


Q ss_pred             CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEccCCeeee
Q 042715           98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSG  157 (212)
Q Consensus        98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i~~  157 (212)
                      ++|++|++++|.+.+ +| .+..+++|+.|++++|.+..    ..+..+++|++|++++|.+.+
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            556666666666553 32 34455555555555555432    134455555555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=7.3e-18  Score=119.82  Aligned_cols=126  Identities=21%  Similarity=0.289  Sum_probs=100.5

Q ss_pred             eeecEEEccCCccccccCc------cccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccC
Q 042715            5 FDIIYIKLSGNQLTGPIPY------WLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGK   75 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~   75 (212)
                      +.++.++++.+.+.+..|.      .+..+++|++|++++|.+.. .| .+..+++|+.|++++|.+. .+|..   +++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            4555556666666555554      89999999999999999985 55 8888999999999999998 66653   357


Q ss_pred             CceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCC-cccccCCcccEEEccCCCCC
Q 042715           76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP-KSLASCTELKFLNLVSEGIF  135 (212)
Q Consensus        76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~  135 (212)
                      |++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            8999999999875 33 57778899999999999884222 36788999999999999763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=7.8e-14  Score=106.51  Aligned_cols=195  Identities=13%  Similarity=0.103  Sum_probs=132.8

Q ss_pred             ceeecEEEccCCccccccCccccc-cCCCceEEccCCeee--------------------ecCCCCCCC--------CCC
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLEN-LENISTLWLEKNQLT--------------------GCIPFEIGN--------LKN   54 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~--------------------~~~~~~~~~--------l~~   54 (212)
                      +.+++.|.++++- ...-...+.. +++|++||+++|.+.                    .....+|..        +++
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~  102 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT  102 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence            4567888887642 2111123333 788999999999987                    344566777        888


Q ss_pred             ccEEEccccccee---cCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcc----cccCCccc---------
Q 042715           55 LSTLCLEHKQLTG---RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLL----EGRVPKSL---------  118 (212)
Q Consensus        55 L~~L~l~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~---------  118 (212)
                      |+.+++.. .+..   .....+.+|+++.+.+|.+....+..|....++..+.......    ......++         
T Consensus       103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~  181 (329)
T 3sb4_A          103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT  181 (329)
T ss_dssp             CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred             CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence            88888887 5542   2334556788888888877656566666666666555444211    00000000         


Q ss_pred             -----------------------------------------ccCCcccEEEccCCCCC---CcccCCcccccEEEccCCe
Q 042715          119 -----------------------------------------ASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNK  154 (212)
Q Consensus       119 -----------------------------------------~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~  154 (212)
                                                               ..+++|+.+++.+|.+.   ...|.++.+|+.+++.+| 
T Consensus       182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-  260 (329)
T 3sb4_A          182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-  260 (329)
T ss_dssp             EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-
T ss_pred             EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-
Confidence                                                     13689999999998663   377899999999999998 


Q ss_pred             eeeecChhccCCCCcc-EEEeeCCeeecCC-CCCcccccccccccccCCC
Q 042715          155 LSGQIPQQFGELTSLE-FFDVSDNLVIGPI-PQGKQFNTFETSSFDGNPG  202 (212)
Q Consensus       155 i~~~~~~~~~~~~~L~-~L~l~~n~~~~~~-~~~~~~~~l~~l~l~~n~~  202 (212)
                      +......+|.++++|+ .+++.+ .+.... .....+++|+.+.+.+|..
T Consensus       261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence            7767788999999999 999998 554433 3344788999999877654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.48  E-value=7.9e-16  Score=126.13  Aligned_cols=195  Identities=11%  Similarity=0.073  Sum_probs=110.0

Q ss_pred             CceeecEEEccCCccccccCccccc-cCC-CceEEccCCe-eee-cCCCCCCCCCCccEEEcccccceec-------CCc
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLEN-LEN-ISTLWLEKNQ-LTG-CIPFEIGNLKNLSTLCLEHKQLTGR-------IPS   71 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~~~~-------~~~   71 (212)
                      .+++|++|+++++.+....+..+.. +++ |++|++++|. +.. ..+.....+++|++|++++|.+.+.       .+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4566777777777665444444444 333 7777777765 221 1111223567788888887776533       223


Q ss_pred             cccCCceEEcccceee----eeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC-------------
Q 042715           72 EIGKLKPIAASSNNFR----GSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI-------------  134 (212)
Q Consensus        72 ~l~~l~~l~l~~n~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~-------------  134 (212)
                      .+++|++|++++|.+.    ..++..+..+++|++|++++|.+. ..+..+..+++|+.|+++....             
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            4567778888777765    222333455677888888887766 3445556666666666653211             


Q ss_pred             ----------------CCcccCCcccccEEEccCCeeeeecC-hhccCCCCccEEEeeCCeeecCCCCC-cccccccccc
Q 042715          135 ----------------FSSTLGNLIVLESLDLSNNKLSGQIP-QQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSS  196 (212)
Q Consensus       135 ----------------~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~  196 (212)
                                      .+..+..+++|++|++++|.+.+... ..+..+++|++|+++++.....++.. ..++++++|+
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  348 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR  348 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence                            12233455667777777766543322 33466677777777632211112211 2456677777


Q ss_pred             cc
Q 042715          197 FD  198 (212)
Q Consensus       197 l~  198 (212)
                      +.
T Consensus       349 L~  350 (592)
T 3ogk_B          349 IE  350 (592)
T ss_dssp             EE
T ss_pred             ee
Confidence            77

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.47  E-value=1.6e-13  Score=105.49  Aligned_cols=105  Identities=19%  Similarity=0.183  Sum_probs=74.4

Q ss_pred             EEEccCC-cccccCCcccccCCcccEEEccC-CCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeC
Q 042715          102 MIELSSN-LLEGRVPKSLASCTELKFLNLVS-EGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSD  176 (212)
Q Consensus       102 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~  176 (212)
                      .++++++ .+. .+|. +..+.+|+.|++++ |.+..   ..|.++++|+.|+|++|++.+..|..|..+++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3466665 566 4566 66677777777775 65532   4567777888888888888777777778888888888888


Q ss_pred             CeeecCCCCCcccccccccccccCCCccCCCC
Q 042715          177 NLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       177 n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      |++.+.++.......|+.|++.+|++.|+|.+
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCCCcc
Confidence            88876666544434478888888888888763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=3.2e-12  Score=100.06  Aligned_cols=163  Identities=12%  Similarity=0.101  Sum_probs=71.3

Q ss_pred             eecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccce---ecCCccccCCceEEcc
Q 042715            6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT---GRIPSEIGKLKPIAAS   82 (212)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~l~l~   82 (212)
                      +|+.+.+.+ .+......+|..|.+|+.+++.++.+......+|. ..+|+.+.+..+ +.   ........+|+++.+.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            466666654 44434445666666666666666655544444444 355555555533 21   1122233344555554


Q ss_pred             cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--------CCcccCCcccccEEEccCCe
Q 042715           83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--------FSSTLGNLIVLESLDLSNNK  154 (212)
Q Consensus        83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--------~~~~~~~~~~L~~L~l~~n~  154 (212)
                      .+ +...-...|.. .+|+.+.+.. .+......+|..+++|+.+.+.++..        ....|.+|++|+.+++.+ .
T Consensus       235 ~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~  310 (401)
T 4fdw_A          235 EN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S  310 (401)
T ss_dssp             TT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T
T ss_pred             CC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c
Confidence            32 22122223333 3444444422 22222333444444444444444321        123344444444444442 2


Q ss_pred             eeeecChhccCCCCccEEEee
Q 042715          155 LSGQIPQQFGELTSLEFFDVS  175 (212)
Q Consensus       155 i~~~~~~~~~~~~~L~~L~l~  175 (212)
                      +......+|.++.+|+.+.+.
T Consensus       311 i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          311 IRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             CCEECTTTTTTCCSCCEEEEC
T ss_pred             eEEEhhhhhcCCCCccEEEEC
Confidence            332333444444444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=2.2e-13  Score=94.26  Aligned_cols=86  Identities=21%  Similarity=0.212  Sum_probs=54.1

Q ss_pred             CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEe
Q 042715           98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDV  174 (212)
Q Consensus        98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  174 (212)
                      +++++|++++|.+.+..+..+..+++|+.|++++|.+..   ..+.++++|++|++++|++.+..+..+..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            455666666666664445556666666666666665532   23456667777777777776555556677777777777


Q ss_pred             eCCeeecCC
Q 042715          175 SDNLVIGPI  183 (212)
Q Consensus       175 ~~n~~~~~~  183 (212)
                      ++|++....
T Consensus       110 ~~N~~~c~c  118 (170)
T 3g39_A          110 LNNPWDCAC  118 (170)
T ss_dssp             CSSCBCTTB
T ss_pred             CCCCCCCCc
Confidence            777776443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=4.1e-13  Score=93.24  Aligned_cols=100  Identities=21%  Similarity=0.235  Sum_probs=58.8

Q ss_pred             cEEEcccccceecCCccc-cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC
Q 042715           56 STLCLEHKQLTGRIPSEI-GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI  134 (212)
Q Consensus        56 ~~L~l~~~~~~~~~~~~l-~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  134 (212)
                      +.++++++.+. .+|..+ .++++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus        15 ~~l~~~~n~l~-~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCCCC-ccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            45666666665 444433 3556666666666655555566666666666666666644334455666666666666655


Q ss_pred             CC---cccCCcccccEEEccCCeee
Q 042715          135 FS---STLGNLIVLESLDLSNNKLS  156 (212)
Q Consensus       135 ~~---~~~~~~~~L~~L~l~~n~i~  156 (212)
                      ..   ..+..+++|++|++++|.+.
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ceeCHHHhccccCCCEEEeCCCCcc
Confidence            32   23555666666666666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.43  E-value=1.1e-11  Score=96.97  Aligned_cols=177  Identities=13%  Similarity=0.111  Sum_probs=130.6

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccc--eecCCccccCCce
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL--TGRIPSEIGKLKP   78 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~   78 (212)
                      |.+|++|+.+++.++.+......+|. +.+|+.+.+..+ +......+|..+++|+.+.+..+--  ....... .+|++
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~  252 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITT  252 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSE
T ss_pred             hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccE
Confidence            56788999999998888855555666 689999999855 5657778899999999999886521  1122222 56788


Q ss_pred             EEcccceeeeeCCCcccCCCcccEEEccCCccc-----ccCCcccccCCcccEEEccCCC--CCCcccCCcccccEEEcc
Q 042715           79 IAASSNNFRGSIPQTCKNEANLAMIELSSNLLE-----GRVPKSLASCTELKFLNLVSEG--IFSSTLGNLIVLESLDLS  151 (212)
Q Consensus        79 l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~L~~L~l~  151 (212)
                      +.+. +.+...-...|..+++|+.+.+.++.+.     ...+.+|..|++|+.+.+..+-  +....|.+|.+|+.+++.
T Consensus       253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEEC
T ss_pred             EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEEC
Confidence            8884 3344455677888899999999887553     3455678888999999988541  134778888999999996


Q ss_pred             CCeeeeecChhccCCCCccEEEeeCCeeecCC
Q 042715          152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI  183 (212)
Q Consensus       152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~  183 (212)
                      .+ +......+|.++ +|+.+++.+|......
T Consensus       332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             TT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence            55 555667888888 8999999998765433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.41  E-value=6.4e-15  Score=120.74  Aligned_cols=35  Identities=9%  Similarity=-0.017  Sum_probs=16.9

Q ss_pred             CCCCccEEEeeCCeeecCCCCCc--cccccccccccc
Q 042715          165 ELTSLEFFDVSDNLVIGPIPQGK--QFNTFETSSFDG  199 (212)
Q Consensus       165 ~~~~L~~L~l~~n~~~~~~~~~~--~~~~l~~l~l~~  199 (212)
                      .+++|++|+++.|.+++......  .+++++.+++.+
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~  412 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL  412 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEee
Confidence            35555555555555543221111  245566666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=1.4e-14  Score=112.27  Aligned_cols=154  Identities=19%  Similarity=0.219  Sum_probs=100.4

Q ss_pred             cCCCceEEccCCeeeecCCCCC----C-CCCCccEEEcccccceec----CCccccCCceEEcccceeeeeCCCcc----
Q 042715           28 LENISTLWLEKNQLTGCIPFEI----G-NLKNLSTLCLEHKQLTGR----IPSEIGKLKPIAASSNNFRGSIPQTC----   94 (212)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~~~~~----~~~~l~~l~~l~l~~n~~~~~~~~~~----   94 (212)
                      +++|++|++++|.++......+    . ..++|+.|++++|.+...    +...+.++++|++++|.+.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3677888888877663222222    2 235788888888877532    22345567888888887754222222    


Q ss_pred             -cCCCcccEEEccCCccccc----CCcccccCCcccEEEccCCCCCC-------cccCCcccccEEEccCCeeeee----
Q 042715           95 -KNEANLAMIELSSNLLEGR----VPKSLASCTELKFLNLVSEGIFS-------STLGNLIVLESLDLSNNKLSGQ----  158 (212)
Q Consensus        95 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~n~i~~~----  158 (212)
                       ...++|++|++++|.++..    ++..+...++|++|++++|.+..       ..+...++|++|+|++|.|++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2346788888888887632    33344667788888888887643       3345667888888888888753    


Q ss_pred             cChhccCCCCccEEEeeCCeeec
Q 042715          159 IPQQFGELTSLEFFDVSDNLVIG  181 (212)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~n~~~~  181 (212)
                      ++..+...++|++|+|++|.+..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence            33445566888888888888753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.32  E-value=4.5e-15  Score=121.66  Aligned_cols=129  Identities=15%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             ccCCceEEcccceeeeeCCCcc-cCCCcccEEEcc--C----Ccccc-----cCCcccccCCcccEEEccCCCCCC---c
Q 042715           73 IGKLKPIAASSNNFRGSIPQTC-KNEANLAMIELS--S----NLLEG-----RVPKSLASCTELKFLNLVSEGIFS---S  137 (212)
Q Consensus        73 l~~l~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~---~  137 (212)
                      +++|++|.+..+.++......+ ..+++|+.|+++  +    +.+++     .++..+..+++|+.|++++ .+..   .
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            4455666555555443222222 235677777777  2    23331     1111245667778887765 3322   1


Q ss_pred             ccC-CcccccEEEccCCeeeeecChhc-cCCCCccEEEeeCCeeecCCCC--CcccccccccccccCCC
Q 042715          138 TLG-NLIVLESLDLSNNKLSGQIPQQF-GELTSLEFFDVSDNLVIGPIPQ--GKQFNTFETSSFDGNPG  202 (212)
Q Consensus       138 ~~~-~~~~L~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~--~~~~~~l~~l~l~~n~~  202 (212)
                      .+. .+++|+.|++++|.+++.....+ ..+++|++|++++|.+.+....  ...+++++.+++.+|+.
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            122 26778888888888765544444 5678888888888887432221  22567888888888875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=7.6e-15  Score=113.83  Aligned_cols=176  Identities=16%  Similarity=0.121  Sum_probs=121.6

Q ss_pred             ceeecEEEccCCccccccCcccccc-----CCCceEEccCCeeeecCCCCC-CCCCCccEEEcccccceecCCc------
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENL-----ENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQLTGRIPS------   71 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~------   71 (212)
                      ++.|++|++++|.++......+...     .+|++|++++|.++......+ ..+++|+.|++++|.++.....      
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3578999999999874443333333     799999999999864322222 3457899999999988643221      


Q ss_pred             --cccCCceEEcccceeeee----CCCcccCCCcccEEEccCCccccc----CCcccccCCcccEEEccCCCCCC-----
Q 042715           72 --EIGKLKPIAASSNNFRGS----IPQTCKNEANLAMIELSSNLLEGR----VPKSLASCTELKFLNLVSEGIFS-----  136 (212)
Q Consensus        72 --~l~~l~~l~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~-----  136 (212)
                        ..++|++|++++|.++..    ++..+...++|++|++++|.+.+.    ++..+...++|+.|++++|.+..     
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              235789999999998642    233446678999999999988743    24556777899999999998854     


Q ss_pred             --cccCCcccccEEEccCCeeeeecChhccCCCC-----ccEEE--eeCCee
Q 042715          137 --STLGNLIVLESLDLSNNKLSGQIPQQFGELTS-----LEFFD--VSDNLV  179 (212)
Q Consensus       137 --~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~-----L~~L~--l~~n~~  179 (212)
                        ..+...+.|++|+|++|.|.+.....+..+..     ++.+.  +..+.+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence              22345688999999999998655544443321     55555  555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.31  E-value=2.7e-14  Score=117.07  Aligned_cols=194  Identities=14%  Similarity=0.089  Sum_probs=95.2

Q ss_pred             ceeecEEEccCCccccccCcccc-ccCCCceEEccCC-eeeec-CCCCCCCCCCccEEEcccccceecC-------Cccc
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLE-NLENISTLWLEKN-QLTGC-IPFEIGNLKNLSTLCLEHKQLTGRI-------PSEI   73 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~-------~~~l   73 (212)
                      +++|++|+++++.+.+..+..+. .+++|++|++++| .+... .+..+..+++|++|++++|.+....       +..+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            34555555555555433333333 4556666666555 23211 2222234556666666655544221       1233


Q ss_pred             cCCceEEcccce--eee-eCCCcccCCCcccEEEccCC-cccccCCcccccCCcccEEEccCCCC---------------
Q 042715           74 GKLKPIAASSNN--FRG-SIPQTCKNEANLAMIELSSN-LLEGRVPKSLASCTELKFLNLVSEGI---------------  134 (212)
Q Consensus        74 ~~l~~l~l~~n~--~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~---------------  134 (212)
                      ++|++|++++|.  +.. .+...+..+++|++|++++| .+. ..+..+..+++|+.|++..+..               
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~  262 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS  262 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence            355566665554  110 01111123456666666655 222 2344444555555555433210               


Q ss_pred             ------------------CCcccCCcccccEEEccCCeeeeec-ChhccCCCCccEEEeeCCeeec-CCCCCc-cccccc
Q 042715          135 ------------------FSSTLGNLIVLESLDLSNNKLSGQI-PQQFGELTSLEFFDVSDNLVIG-PIPQGK-QFNTFE  193 (212)
Q Consensus       135 ------------------~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~~~~-~~~~~~-~~~~l~  193 (212)
                                        .+..+..+++|++|++++|.+.+.. ...+..+++|++|++++| +.. .++... .+++++
T Consensus       263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~  341 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR  341 (594)
T ss_dssp             TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred             cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence                              0111124677888888888865432 233557788888888887 321 111111 367788


Q ss_pred             cccccc
Q 042715          194 TSSFDG  199 (212)
Q Consensus       194 ~l~l~~  199 (212)
                      ++++.+
T Consensus       342 ~L~L~~  347 (594)
T 2p1m_B          342 ELRVFP  347 (594)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            888744

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=1.7e-11  Score=94.09  Aligned_cols=86  Identities=22%  Similarity=0.202  Sum_probs=48.2

Q ss_pred             ccCCCcccEEEccC-CcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccCCCCc
Q 042715           94 CKNEANLAMIELSS-NLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSL  169 (212)
Q Consensus        94 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L  169 (212)
                      +..+++|++|++++ |.+.+..+..|+.+++|+.|++++|.+.   +..|.++++|++|+|++|++.+..+..+..++ |
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L  105 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L  105 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence            44455566666654 5555444455556666666666666542   23455566666666666666643334444444 6


Q ss_pred             cEEEeeCCeee
Q 042715          170 EFFDVSDNLVI  180 (212)
Q Consensus       170 ~~L~l~~n~~~  180 (212)
                      +.|++++|.+.
T Consensus       106 ~~l~l~~N~~~  116 (347)
T 2ifg_A          106 QELVLSGNPLH  116 (347)
T ss_dssp             CEEECCSSCCC
T ss_pred             eEEEeeCCCcc
Confidence            66666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.93  E-value=6.2e-10  Score=85.82  Aligned_cols=156  Identities=15%  Similarity=0.144  Sum_probs=83.3

Q ss_pred             ccccCCCceEEccCCeee---------ecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCccc
Q 042715           25 LENLENISTLWLEKNQLT---------GCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCK   95 (212)
Q Consensus        25 ~~~l~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~   95 (212)
                      ...+++|+.|.+.+....         ..+...+..+|+|+.|.+.++.-....+-..++|++|.+..+.+.......+.
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHH
Confidence            445677777777553211         01112234567777777766621111111355677777776665432212222


Q ss_pred             --CCCcccEEEccCC--ccccc-----CCccc--ccCCcccEEEccCCCCCC---cc---cCCcccccEEEccCCeeeee
Q 042715           96 --NEANLAMIELSSN--LLEGR-----VPKSL--ASCTELKFLNLVSEGIFS---ST---LGNLIVLESLDLSNNKLSGQ  158 (212)
Q Consensus        96 --~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~n~~~~---~~---~~~~~~L~~L~l~~n~i~~~  158 (212)
                        .+++|+.|+++.+  ...+.     +...+  ..+++|+.|++.+|.+..   ..   ...+++|++|+|+.|.+.+.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence              4567777776421  11100     11112  246778888887776532   11   12467788888888877653


Q ss_pred             c----ChhccCCCCccEEEeeCCeee
Q 042715          159 I----PQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       159 ~----~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      .    +..+..+++|+.|++++|.+.
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHhhcccCCcceEEECCCCcCC
Confidence            2    222234577888888887765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.92  E-value=5.4e-08  Score=75.96  Aligned_cols=195  Identities=14%  Similarity=0.100  Sum_probs=100.3

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccce-ecCCccccCCceE
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT-GRIPSEIGKLKPI   79 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~l   79 (212)
                      |.+|++|+.+.+.++-.. .....|..+.+|+.+.+..+ +......+|..+..|+.+.+..+... +.....-.+++++
T Consensus       158 F~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i  235 (394)
T 4fs7_A          158 FATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNI  235 (394)
T ss_dssp             TTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEE
T ss_pred             hcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceE
Confidence            345666666666544322 34445666666666666554 23344455666666665555443221 1111111233344


Q ss_pred             EcccceeeeeCCCcccCCCcccEEEccCCccc--------------------ccCCcccccCCcccEEEccCCC--CCCc
Q 042715           80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLE--------------------GRVPKSLASCTELKFLNLVSEG--IFSS  137 (212)
Q Consensus        80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~~~~~~~~~~~~L~~L~l~~n~--~~~~  137 (212)
                      .+.... ...-...+.....++.+.+..+...                    .....++..+.+|+.+.+..+-  +-..
T Consensus       236 ~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~I~~~  314 (394)
T 4fs7_A          236 IIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFIGEE  314 (394)
T ss_dssp             EECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCCEECTT
T ss_pred             EECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccccceechh
Confidence            332211 1111123333444444444333211                    0112345566677777765542  1346


Q ss_pred             ccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCC-CCcccccccccccccC
Q 042715          138 TLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP-QGKQFNTFETSSFDGN  200 (212)
Q Consensus       138 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~l~~l~l~~n  200 (212)
                      .|.++.+|+.+++..+ +......+|.++.+|+.+++..+ +..... +.....+|+.+.+..+
T Consensus       315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            6778888888888654 55455678888888888888766 432222 2235566777666443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=6.1e-10  Score=85.85  Aligned_cols=171  Identities=13%  Similarity=0.117  Sum_probs=113.6

Q ss_pred             CceeecEEEccCCccc---------cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---
Q 042715            3 LCFDIIYIKLSGNQLT---------GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---   70 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---   70 (212)
                      ++++|+.|.+.+....         ..+...+..+|+|+.|.++++.-. ..+. + .+++|+.|++..+.+.....   
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence            3578999988764321         124455677899999999887312 2332 3 38999999999887753221   


Q ss_pred             --ccccCCceEEcccc--eeee-----eCCCcc--cCCCcccEEEccCCcccccCCccc---ccCCcccEEEccCCCCCC
Q 042715           71 --SEIGKLKPIAASSN--NFRG-----SIPQTC--KNEANLAMIELSSNLLEGRVPKSL---ASCTELKFLNLVSEGIFS  136 (212)
Q Consensus        71 --~~l~~l~~l~l~~n--~~~~-----~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~  136 (212)
                        ..+++|++|.++.+  ...+     .+...+  ..+++|+.|.+.+|.+.+..+..+   ..+++|++|+++.|.+..
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence              25788999987532  1100     111122  246899999999998874332223   257899999999998754


Q ss_pred             -------cccCCcccccEEEccCCeeeeecChhccC-CCCccEEEeeCCe
Q 042715          137 -------STLGNLIVLESLDLSNNKLSGQIPQQFGE-LTSLEFFDVSDNL  178 (212)
Q Consensus       137 -------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~~n~  178 (212)
                             ..+..+++|+.|+++.|.+++.....+.. +  ...++++.++
T Consensus       294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence                   22345789999999999998655444443 2  3568888876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.72  E-value=6.1e-07  Score=69.97  Aligned_cols=103  Identities=16%  Similarity=0.263  Sum_probs=49.3

Q ss_pred             cCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC--CCCcccCCcccccEEEccCCeeeeecChhccCCCCccEE
Q 042715           95 KNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG--IFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFF  172 (212)
Q Consensus        95 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L  172 (212)
                      ..+..|+.+.+..+... ....++..+..|+.+.+...-  +-...|.+|.+|+.+++..+ ++.....+|.++.+|+.+
T Consensus       262 ~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             TTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             eecccccEEecccccce-ecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence            33444555554433221 223344445555555554321  12245566666666666544 333445566666666666


Q ss_pred             EeeCCeeecCCCC-CcccccccccccccC
Q 042715          173 DVSDNLVIGPIPQ-GKQFNTFETSSFDGN  200 (212)
Q Consensus       173 ~l~~n~~~~~~~~-~~~~~~l~~l~l~~n  200 (212)
                      .+..+ +...... .....+|+.+.+.++
T Consensus       340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          340 AIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             EECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            66544 3222111 124455666665554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.62  E-value=6.1e-07  Score=69.98  Aligned_cols=171  Identities=16%  Similarity=0.130  Sum_probs=106.9

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeee---------------------ecCCCCCCCCCCccEEE
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLT---------------------GCIPFEIGNLKNLSTLC   59 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---------------------~~~~~~~~~l~~L~~L~   59 (212)
                      |.+|.+|+.+.+..+ +......+|..+..|+.+.+..+...                     .....+|..+..++.+.
T Consensus       181 F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~  259 (394)
T 4fs7_A          181 FSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESIS  259 (394)
T ss_dssp             TTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEE
T ss_pred             ccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEE
Confidence            456778888887665 33344556777777777766554322                     11223344444455444


Q ss_pred             cccccce--ecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC--CC
Q 042715           60 LEHKQLT--GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG--IF  135 (212)
Q Consensus        60 l~~~~~~--~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~  135 (212)
                      +..+...  .........+..+......   .....+..+.+|+.+.+..+ +......+|..+.+|+.+++..+-  +-
T Consensus       260 ~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~  335 (394)
T 4fs7_A          260 IQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIG  335 (394)
T ss_dssp             ECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEEC
T ss_pred             cCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEh
Confidence            4433221  1111122233333333322   22245667788999988765 443556788899999999997652  23


Q ss_pred             CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCC
Q 042715          136 SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN  177 (212)
Q Consensus       136 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  177 (212)
                      ...|.+|.+|+.+++..+ +......+|.++.+|+.+++..+
T Consensus       336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            478899999999999877 66567789999999999998755

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.47  E-value=9.7e-08  Score=65.64  Aligned_cols=81  Identities=7%  Similarity=0.080  Sum_probs=62.4

Q ss_pred             CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC----cccCC----cccccEEEccCC-eeeeecChhccCCCC
Q 042715           98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGN----LIVLESLDLSNN-KLSGQIPQQFGELTS  168 (212)
Q Consensus        98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~----~~~L~~L~l~~n-~i~~~~~~~~~~~~~  168 (212)
                      ..|++|+++++.+++.--..+..+++|+.|++++|..+.    ..+..    +++|++|+|++| +|++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            478999999998875544566788899999999986543    22333    347999999998 588766667788999


Q ss_pred             ccEEEeeCCe
Q 042715          169 LEFFDVSDNL  178 (212)
Q Consensus       169 L~~L~l~~n~  178 (212)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999985

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.47  E-value=1.7e-08  Score=70.46  Aligned_cols=116  Identities=16%  Similarity=0.101  Sum_probs=72.2

Q ss_pred             CCCCCCCccEEEcccc-cceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCccccc----CCcccccCC
Q 042715           48 EIGNLKNLSTLCLEHK-QLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGR----VPKSLASCT  122 (212)
Q Consensus        48 ~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~  122 (212)
                      .+...+.|++|++++| .+.......                 +...+...++|++|++++|.+.+.    +...+...+
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~-----------------l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~   93 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKA-----------------CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN   93 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHH-----------------HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHH-----------------HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC
Confidence            3455677777777777 665221111                 112233345677777777776532    223344556


Q ss_pred             cccEEEccCCCCCC-------cccCCcccccEEEc--cCCeeeee----cChhccCCCCccEEEeeCCeee
Q 042715          123 ELKFLNLVSEGIFS-------STLGNLIVLESLDL--SNNKLSGQ----IPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       123 ~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l--~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      +|++|++++|.+..       ..+...+.|++|++  ++|.+.+.    +...+...++|++|++++|.+.
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            77888888877643       34556677888888  77888643    3445556688888888888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.47  E-value=5.1e-09  Score=73.19  Aligned_cols=119  Identities=13%  Similarity=0.131  Sum_probs=72.4

Q ss_pred             cCccccccCCCceEEccCC-eeee----cCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCccc
Q 042715           21 IPYWLENLENISTLWLEKN-QLTG----CIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCK   95 (212)
Q Consensus        21 ~~~~~~~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~   95 (212)
                      +...+...++|++|++++| .+..    .+...+...++|++|++++|.+.......+                 ...+.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l-----------------~~~L~   90 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL-----------------AEMLK   90 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH-----------------HHHHH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH-----------------HHHHH
Confidence            3445667888999999998 7662    233455667889999999998763221111                 11222


Q ss_pred             CCCcccEEEccCCccccc----CCcccccCCcccEEEc--cCCCCCC-------cccCCcccccEEEccCCeee
Q 042715           96 NEANLAMIELSSNLLEGR----VPKSLASCTELKFLNL--VSEGIFS-------STLGNLIVLESLDLSNNKLS  156 (212)
Q Consensus        96 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~n~~~~-------~~~~~~~~L~~L~l~~n~i~  156 (212)
                      ..++|++|++++|.+.+.    +...+...+.|++|++  ++|.+.+       ..+...+.|++|++++|.+.
T Consensus        91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            334566666666666532    2334455566777777  6666533       23334567788888877765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.26  E-value=3.5e-05  Score=59.60  Aligned_cols=149  Identities=13%  Similarity=0.102  Sum_probs=85.5

Q ss_pred             ccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccce--ecCCccccCCceEEcccceeeeeCCCcccCCCcccE
Q 042715           25 LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT--GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAM  102 (212)
Q Consensus        25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~  102 (212)
                      +..+..+..+.+...... ....++..+.+++.+.+..+-..  .........|+++.+..+ +...-...+....+++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~  267 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT  267 (379)
T ss_dssp             CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccccccccccceeE-EeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence            444455555555443322 34455666667777666544211  122223345566665443 23233445666677777


Q ss_pred             EEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCC
Q 042715          103 IELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN  177 (212)
Q Consensus       103 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  177 (212)
                      +.+..+ +......+|..+.+|+.+.+..+.+   -...|.+|.+|+.+.+..+ +......+|.++.+|+.+.+..+
T Consensus       268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            777553 3324445677777788877766543   2466777777888877654 44355667777777777776544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.26  E-value=5.2e-06  Score=64.71  Aligned_cols=145  Identities=12%  Similarity=0.147  Sum_probs=88.2

Q ss_pred             ecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEccccee
Q 042715            7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNF   86 (212)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~   86 (212)
                      +..+.+.. .+......+|..+..|+.+.+...... ....+|..+..|+.+.+... +. .                  
T Consensus       244 ~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~-~------------------  301 (394)
T 4gt6_A          244 DPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-IT-E------------------  301 (394)
T ss_dssp             CSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC-E------------------
T ss_pred             cceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCCc-cc-c------------------
Confidence            33444432 233345568899999999999876544 66778999999999888643 22 0                  


Q ss_pred             eeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCC--CCCCcccCCcccccEEEccCCeeeeecChhcc
Q 042715           87 RGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSE--GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFG  164 (212)
Q Consensus        87 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  164 (212)
                        .-...|.++.+|+.+.+..+ +......+|..|.+|+.+.+..+  .+-...|.+|.+|+.+++.++... .  ..+.
T Consensus       302 --I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~~~  375 (394)
T 4gt6_A          302 --LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQ-W--NAIS  375 (394)
T ss_dssp             --ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHH-H--HTCB
T ss_pred             --cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceee-h--hhhh
Confidence              11235566677777777654 44344567777788888887654  123467778888888888877543 1  3566


Q ss_pred             CCCCccEEEeeCCee
Q 042715          165 ELTSLEFFDVSDNLV  179 (212)
Q Consensus       165 ~~~~L~~L~l~~n~~  179 (212)
                      .+..|+.+.+..+.+
T Consensus       376 ~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          376 TDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCCCC----------
T ss_pred             ccCCCCEEEeCCCCE
Confidence            677787777766544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=6e-07  Score=66.09  Aligned_cols=79  Identities=20%  Similarity=0.236  Sum_probs=51.1

Q ss_pred             cccCCCceEEccCCeeee--cCCCCCCCCCCccEEEcccccceec-CCcccc--CCceEEcccceeeeeCCC-------c
Q 042715           26 ENLENISTLWLEKNQLTG--CIPFEIGNLKNLSTLCLEHKQLTGR-IPSEIG--KLKPIAASSNNFRGSIPQ-------T   93 (212)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~--~l~~l~l~~n~~~~~~~~-------~   93 (212)
                      ..+++|+.|++++|.+.+  ..+..+..+++|+.|++++|.+.+. ....+.  +|++|.+.+|++....+.       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            457788888888887774  2334455678888888888877632 112333  677888888887654431       2


Q ss_pred             ccCCCcccEEE
Q 042715           94 CKNEANLAMIE  104 (212)
Q Consensus        94 ~~~~~~L~~L~  104 (212)
                      +..+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            45667777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.21  E-value=1e-06  Score=64.85  Aligned_cols=64  Identities=23%  Similarity=0.322  Sum_probs=42.9

Q ss_pred             ccCCcccEEEccCCCCCC-----cccCCcccccEEEccCCeeeeecChhccCCC--CccEEEeeCCeeecCCC
Q 042715          119 ASCTELKFLNLVSEGIFS-----STLGNLIVLESLDLSNNKLSGQIPQQFGELT--SLEFFDVSDNLVIGPIP  184 (212)
Q Consensus       119 ~~~~~L~~L~l~~n~~~~-----~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~  184 (212)
                      ..++.|+.|++++|.+..     ..+..+++|+.|+|++|++.+.  ..+..+.  +|+.|+|++|++++..|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            456778888888887644     2334677888888888888743  2233333  78888888888876554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.18  E-value=1.3e-06  Score=57.21  Aligned_cols=60  Identities=18%  Similarity=0.258  Sum_probs=33.7

Q ss_pred             EEEccCCeee-eecChhccCCCCccEEEeeCCeeecCCCCCc-ccccccccccccCCCccCCCC
Q 042715          147 SLDLSNNKLS-GQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-QFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       147 ~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      .++.+++.++ ..+|..+  -+++++|+|++|++....+... .+++++.+.|.+|||.|+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            4555555553 1233221  1346666666666665444332 556667777777777777753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.10  E-value=0.00014  Score=56.23  Aligned_cols=189  Identities=16%  Similarity=0.046  Sum_probs=106.6

Q ss_pred             eecEEEccCCccccccCccccccCCCceEEccCCeeee------------cCCCCCCCCCCccEEEcccccce--ecCCc
Q 042715            6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTG------------CIPFEIGNLKNLSTLCLEHKQLT--GRIPS   71 (212)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~l~~L~~L~l~~~~~~--~~~~~   71 (212)
                      +++.+.+..+ +.......|..+.+++.+.+.......            .....+.....+..+.+......  .....
T Consensus       136 ~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~  214 (379)
T 4h09_A          136 SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFS  214 (379)
T ss_dssp             CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTT
T ss_pred             eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccc
Confidence            3444444432 333445567777888777765542110            01112334444555544433221  11122


Q ss_pred             cccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCcccccEEE
Q 042715           72 EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLESLD  149 (212)
Q Consensus        72 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~  149 (212)
                      ...+++.+.+..+ +...-...+.....|+.+.+..+ +......++..+..|+.+.+..+-.  ....|.++.+|+.+.
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccccc
Confidence            2334556655443 22233455667778888888665 4434456777788888888765421  236677888888888


Q ss_pred             ccCCeeeeecChhccCCCCccEEEeeCCeeecCCC-CCcccccccccccc
Q 042715          150 LSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP-QGKQFNTFETSSFD  198 (212)
Q Consensus       150 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~l~~l~l~  198 (212)
                      +.++.+......+|.++.+|+.+.+..+ +..... +.....+|+++.+.
T Consensus       293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            8888777566778888888888888655 322221 22244556666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.05  E-value=7.7e-07  Score=61.16  Aligned_cols=91  Identities=12%  Similarity=0.039  Sum_probs=51.9

Q ss_pred             cCCCceEEccCCeeeecCCCCCCCCCCccEEEccccc-ceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEcc
Q 042715           28 LENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQ-LTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELS  106 (212)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~  106 (212)
                      -.+|++||++++.++...-..+..+++|+.|++++|. ++......+..+                 -...++|++|+++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-----------------~~~~~~L~~L~Ls  122 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-----------------ENLQKSMLEMEII  122 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-----------------HHHHHHCCEEEEE
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-----------------ccccCCCCEEEcC
Confidence            3467788888877765444556677778888777774 442211111100                 0001357777777


Q ss_pred             CCc-ccccCCcccccCCcccEEEccCCCCC
Q 042715          107 SNL-LEGRVPKSLASCTELKFLNLVSEGIF  135 (212)
Q Consensus       107 ~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~  135 (212)
                      +|. +++.--..+..+++|+.|+++++..+
T Consensus       123 ~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          123 SCGNVTDKGIIALHHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             SCTTCCHHHHHHGGGCTTCCEEEEESCTTC
T ss_pred             CCCcCCHHHHHHHhcCCCCCEEECCCCCCC
Confidence            763 55333334556777777777777543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.32  E-value=0.0004  Score=45.24  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=20.5

Q ss_pred             cccEEEccCCeeeeecChhccCCCCccEEEeeCCee
Q 042715          144 VLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV  179 (212)
Q Consensus       144 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~  179 (212)
                      ++++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455566666666544444555556666666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.16  E-value=8.2e-05  Score=52.03  Aligned_cols=86  Identities=14%  Similarity=0.116  Sum_probs=54.4

Q ss_pred             ccCCCcccEEEccCCcccccCC----cccccCCcccEEEccCCCCCC-------cccCCcccccEEEccCC---eeee--
Q 042715           94 CKNEANLAMIELSSNLLEGRVP----KSLASCTELKFLNLVSEGIFS-------STLGNLIVLESLDLSNN---KLSG--  157 (212)
Q Consensus        94 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~n---~i~~--  157 (212)
                      +..-+.|+.|++++|.+.+...    ..+..-..|+.|+++.|.+.+       ..+...+.|++|+|+++   .+.+  
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            3445677888888887764322    233344678888888887743       34455566888888754   3332  


Q ss_pred             --ecChhccCCCCccEEEeeCCee
Q 042715          158 --QIPQQFGELTSLEFFDVSDNLV  179 (212)
Q Consensus       158 --~~~~~~~~~~~L~~L~l~~n~~  179 (212)
                        .+...+..-+.|..|+++.|.+
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhCCCcCeEeccCCCc
Confidence              2345556667888888877754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.56  E-value=0.00084  Score=46.91  Aligned_cols=83  Identities=11%  Similarity=0.184  Sum_probs=61.0

Q ss_pred             cCCCcccEEEccCC-cccc----cCCcccccCCcccEEEccCCCCCC-------cccCCcccccEEEccCCeeeee----
Q 042715           95 KNEANLAMIELSSN-LLEG----RVPKSLASCTELKFLNLVSEGIFS-------STLGNLIVLESLDLSNNKLSGQ----  158 (212)
Q Consensus        95 ~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~n~i~~~----  158 (212)
                      ..-+.|++|+++++ .+..    .+..++..-..|+.|++++|.+.+       ..+...+.|++|+|+.|.|.+.    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34567899999885 6653    233455555789999999998854       3344567899999999999753    


Q ss_pred             cChhccCCCCccEEEeeCC
Q 042715          159 IPQQFGELTSLEFFDVSDN  177 (212)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~n  177 (212)
                      +.+++..-..|+.|+|++|
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence            4456667788999999876

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.47  E-value=1.5  Score=26.63  Aligned_cols=48  Identities=13%  Similarity=0.003  Sum_probs=35.4

Q ss_pred             CccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccc
Q 042715           15 NQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK   63 (212)
Q Consensus        15 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   63 (212)
                      ..+...-..+|.+|.+|+.+.+...- +.....+|..+.+|+.+.+...
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence            34555556688889999999887753 3356678888999988887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.9 bits (190), Expect = 8e-18
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query: 149 DLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL 208
           DL NN++ G +PQ   +L  L   +VS N + G IPQG     F+ S++  N  LCG PL
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Query: 209 PK 210
           P 
Sbjct: 310 PA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 3e-10
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 9   YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEH-KQLTG 67
            + L  N++ G +P  L  L+ + +L +  N L G IP + GNL+        + K L G
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.6 bits (114), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 23  YWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS--EIGKLKPIA 80
             +   +N++ L L  N++ G +P  +  LK L +L +    L G IP    + +    A
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297

Query: 81  ASSNNFRGSIP 91
            ++N      P
Sbjct: 298 YANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 6e-04
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 22/79 (27%)

Query: 82  SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGN 141
            +N   G++PQ       L  + +S N L G +P                        GN
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP----------------------QGGN 289

Query: 142 LIVLESLDLSNNKLSGQIP 160
           L   +    +NNK     P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 132 EGIFSSTLGNLIVLESLDLSNNKLSG--QIPQQFGELTSLEFFDVSDN 177
            G+   T      + +LDLS   L     IP     L  L F  +   
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.8 bits (185), Expect = 8e-17
 Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 10/176 (5%)

Query: 3   LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEH 62
           +  ++  + L+GNQL       L +L N++ L L  NQ++   P     L  L+ L L  
Sbjct: 217 ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGA 272

Query: 63  KQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCT 122
            Q++   P            + N    I      + NL  + L  N +    P  ++S T
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLK-NLTYLTLYFNNISDISP--VSSLT 329

Query: 123 ELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           +L+ L   +  +   S+L NL  +  L   +N++S   P     LT +    ++D 
Sbjct: 330 KLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 8e-08
 Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 30/179 (16%)

Query: 4   CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
             ++  +  + NQ++   P  +    N+  L L  NQL       + +L NL+ L L + 
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 64  QLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTE 123
           Q++   P                             L  ++L +N +    P +  +   
Sbjct: 252 QISNLAP-----------------------LSGLTKLTELKLGANQISNISPLAGLTALT 288

Query: 124 LKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGP 182
              LN  ++    S + NL  L  L L  N +S   P     LT L+    ++N V   
Sbjct: 289 NLELN-ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV 344

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +S    +  +  + N+++      L NL NI+ L    NQ++   P    NL  ++ L L
Sbjct: 325 VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGL 380

Query: 61  EH 62
             
Sbjct: 381 ND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 95  KNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNN 153
              A      L    +   V  S     ++  L     GI S   +  L  L  ++ SNN
Sbjct: 19  TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN 76

Query: 154 KLSGQIPQQFGELTSLEFFDVS 175
           +L+   P     LT L    ++
Sbjct: 77  QLTDITP--LKNLTKLVDILMN 96

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.1 bits (178), Expect = 4e-16
 Identities = 40/204 (19%), Positives = 67/204 (32%), Gaps = 2/204 (0%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           D   + L  N++T       +NL+N+ TL L  N+++   P     L  L  L L   QL
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE--GRVPKSLASCTE 123
                     L+ +    N               + ++EL +N L+  G    +     +
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 124 LKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183
           L ++ +    I +   G    L  L L  NK++         L +L    +S N +    
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211

Query: 184 PQGKQFNTFETSSFDGNPGLCGEP 207
                           N  L   P
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 25/165 (15%), Positives = 60/165 (36%), Gaps = 16/165 (9%)

Query: 4   CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
              ++ +  +  + +G      + ++ +S + +    +T       G   +L+ L L+  
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGN 181

Query: 64  QLTGRIPSEIGKLKPIA---ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
           ++T    + +  L  +A    S N+       +  N  +L  + L++N L  +VP  LA 
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 240

Query: 121 CTELKFLNL-------VSEGIFS--STLGNLIVLESLDLSNNKLS 156
              ++ + L       +    F              + L +N + 
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 98  ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSE---GIFSSTLGNLIVLESLDLSNNK 154
            + A+++L +N +         +   L  L L++     I       L+ LE L LS N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 155 LSGQIPQQFGELTSLEFFD 173
           L     +    L  L   +
Sbjct: 91  LKELPEKMPKTLQELRVHE 109

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 8e-08
 Identities = 39/211 (18%), Positives = 64/211 (30%), Gaps = 8/211 (3%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
               I L GN+++           N++ LWL  N L          L  L  L L     
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 66  TGRIP----SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASC 121
              +       +G+L  +       +   P   +  A L  + L  N L+     +    
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 122 TELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178
             L  L L       +       L  L+ L L  N+++   P  F +L  L    +  N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 179 VIG-PIPQGKQFNTFETSSFDGNPGLCGEPL 208
           +   P          +    + NP +C    
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-07
 Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 4/157 (2%)

Query: 4   CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
              + Y+ L  N L         +L N++ L+L  N+++         L +L  L L   
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 64  QLTGRIPSEIGKLKPIA---ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
           ++    P     L  +      +NN      +       L  + L+ N       ++   
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPL 246

Query: 121 CTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSG 157
              L+     S  +  S    L   +   L+ N L G
Sbjct: 247 WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 8/169 (4%)

Query: 7   IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
           I  I  + + +       ++ L N++ L+L  N+LT   P    NLKNL  L L+  ++ 
Sbjct: 48  IDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPL--ANLKNLGWLFLDENKVK 103

Query: 67  GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKF 126
                +  K     +  +N    I          ++   ++ + +  V   L     L  
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163

Query: 127 LNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVS 175
            +     I    L  L  L++L LS N +S    +    L +L+  ++ 
Sbjct: 164 EDNQISDI--VPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 8/170 (4%)

Query: 8   IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG 67
           I   L    +T  +      L +I  +    + +      +   L N++ L L   +LT 
Sbjct: 27  IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTD 82

Query: 68  RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
             P  +  LK +     +       +   +          +     +   +         
Sbjct: 83  IKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140

Query: 128 NLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
              ++    + L  L  L++L L +N++S  +P     LT L+   +S N
Sbjct: 141 LGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 7e-06
 Identities = 43/207 (20%), Positives = 75/207 (36%), Gaps = 6/207 (2%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           +S     + +      LT  +P  L    + + L L +N L       +     L+ L L
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 61  EHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
           +  +LT         +      S+N   S+P   +    L ++++S N L      +L  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 121 CTELKFLNLVS---EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
             EL+ L L     + +    L     LE L L+NN L+         L +L+   + +N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 178 LVIGPIPQGKQFNTFETSSFDGNPGLC 204
            +          +    +   GNP LC
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 6/97 (6%)

Query: 4   CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
             ++       N  +  I    +   ++  L +  N+L   +P     L+ L        
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFN 314

Query: 64  QLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANL 100
            L   +P     LK +    N  R   P   ++  +L
Sbjct: 315 HLA-EVPELPQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 10/90 (11%)

Query: 84  NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGN 141
           N     I   C    +L  + +S+N L   +P        L+ L      +        N
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEVPELPQN 325

Query: 142 LIVLESLDLSNNKLSGQIPQQFGELTSLEF 171
           L   + L +  N L  + P     +  L  
Sbjct: 326 L---KQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 1   ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
           ++    +  +K   N+++   P  L +L N+  + L+ NQ++   P    N  NL  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTL 224

Query: 61  EH 62
            +
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 137 STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSD 176
           S L +L  L  + L NN++S   P      ++L    +++
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-05
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 99  NLAMIELSSN-LLEGRVPKSLASCTELKFLNLVSEGI-------FSSTLGNLIVLESLDL 150
           ++  +++    L + R  + L    + + + L   G+        SS L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 151 SNNKLSGQIPQQFGEL 166
            +N+L         + 
Sbjct: 63  RSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 4e-04
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%)

Query: 120 SCTELKFLNLVSEGI-------FSSTLGNLIVLESLDLSNNKLSGQIPQQFGE-----LT 167
             + L+ L L    +        ++TL     L  LDLSNN L      Q  E       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 168 SLEFFDVSDNLVIGPIPQ 185
            LE   + D      +  
Sbjct: 427 LLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 4e-04
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 94  CKNEANLAMIELSSNLLEGRVPKSLAS----CTELKFLNLVS--------EGIFSSTLGN 141
            +  + L ++ L+   +      SLA+       L+ L+L +          +  S    
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 142 LIVLESLDLSNNKLSGQIPQQFGEL 166
             +LE L L +   S ++  +   L
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 4e-04
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 6  DIIYIKLSGNQLT-GPIPYWLENLENISTLWLEKNQLTG----CIPFEIGNLKNLSTLCL 60
          DI  + +   +L+       L  L+    + L+   LT      I   +     L+ L L
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 61 EHKQLTGRIPSEIGKL 76
             +L       + + 
Sbjct: 63 RSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.001
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 9/78 (11%)

Query: 9   YIKLSGNQLTG----PIPYWLENLENISTLWLEKNQLTGCIPFEIG-----NLKNLSTLC 59
            + L+   ++      +   L    ++  L L  N L      ++          L  L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 60  LEHKQLTGRIPSEIGKLK 77
           L     +  +   +  L+
Sbjct: 433 LYDIYWSEEMEDRLQALE 450

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 136 SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
           ++   N +    LDL   K+   I      L   +  D SDN
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN 51

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 6e-04
 Identities = 22/137 (16%), Positives = 37/137 (27%), Gaps = 23/137 (16%)

Query: 33  TLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQ 92
            L L    LT  +   +  L  ++ L L H +L    P+           +++       
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 93  TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSN 152
              N   L  + L +N L                     +      L +   L  L+L  
Sbjct: 60  GVANLPRLQELLLCNNRL--------------------QQSAAIQPLVSCPRLVLLNLQG 99

Query: 153 NKLSGQIPQQFGELTSL 169
           N L          L  +
Sbjct: 100 NSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 5/103 (4%)

Query: 12  LSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS 71
           L+   LT  +   LE L  ++ L L  N+L    P  +  L+ L  L      L      
Sbjct: 5   LAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGV 61

Query: 72  EIGKLKPIAASSNN--FRGSIPQTCKNEANLAMIELSSNLLEG 112
                       NN   + +  Q   +   L ++ L  N L  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 20/87 (22%), Positives = 34/87 (39%)

Query: 121 CTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180
             EL+      + I +     L  L++L+L +N++S  +P  F  L SL   +++ N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 181 GPIPQGKQFNTFETSSFDGNPGLCGEP 207
                          S +G    CG P
Sbjct: 140 CNCHLAWFAEWLRKKSLNGGAARCGAP 166

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 6/87 (6%)

Query: 124 LKFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQ----IPQQFGELTSLEFFDVSDN 177
           LK   + +E      + L     ++ + LS N +  +    + +       LE  + SD 
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 178 LVIGPIPQGKQFNTFETSSFDGNPGLC 204
                  +  +       +    P L 
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLH 96

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 5/42 (11%), Positives = 10/42 (23%)

Query: 134 IFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVS 175
           + +           LD+S  ++          L  L      
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 26/185 (14%)

Query: 6   DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
           + +   L    +T  +     +L+ ++TL  ++  +       +  L NL+ +   + QL
Sbjct: 19  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQL 74

Query: 66  TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
           T   P +          +NN    I           +   ++ + +    K+L +   L+
Sbjct: 75  TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134

Query: 126 FLNLV--------------------SEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGE 165
             +                      ++      L NL  LE LD+S+NK+S        +
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAK 192

Query: 166 LTSLE 170
           LT+LE
Sbjct: 193 LTNLE 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.26
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.56
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.05

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.5e-28  Score=183.94  Aligned_cols=210  Identities=30%  Similarity=0.513  Sum_probs=169.8

Q ss_pred             CCCceeecEEEccC-CccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcccc---CC
Q 042715            1 ISLCFDIIYIKLSG-NQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG---KL   76 (212)
Q Consensus         1 ~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~---~l   76 (212)
                      |+++++|++|++++ |++.+.+|..|.++++|++|++++|.+.+..+..+..+..|+.+++++|.+...+|..+.   .+
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L  151 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccc
Confidence            35788999999986 788888999999999999999999998888887788888888888888887766665544   45


Q ss_pred             ceEEcccceeeeeCCCcccCCCcc-cEEEccCCccccc-----------------------CCcccccCCcccEEEccCC
Q 042715           77 KPIAASSNNFRGSIPQTCKNEANL-AMIELSSNLLEGR-----------------------VPKSLASCTELKFLNLVSE  132 (212)
Q Consensus        77 ~~l~l~~n~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~-----------------------~~~~~~~~~~L~~L~l~~n  132 (212)
                      +++++++|.+.+.+|..+..+..+ +.+.+++|.+.+.                       .|..+..++.++.+++.++
T Consensus       152 ~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             ceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            778888887777777666655544 5666666655543                       3344455566777777777


Q ss_pred             CCC--CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCCCCC
Q 042715          133 GIF--SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLPK  210 (212)
Q Consensus       133 ~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  210 (212)
                      .+.  ...+..++.|+.|++++|++++.+|..+..+++|++|+|++|+++|.+|....+++++.+.+.||+.+||.|+|.
T Consensus       232 ~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~  311 (313)
T d1ogqa_         232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSC
T ss_pred             cccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCCC
Confidence            653  245677899999999999999999999999999999999999999999988889999999999999999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-27  Score=175.14  Aligned_cols=199  Identities=22%  Similarity=0.232  Sum_probs=170.1

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEEcc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAAS   82 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l~   82 (212)
                      ..+.+++.++++++ .+|..+.  +++++|++++|.+++..+.+|..+++|++|++++|.++ .++  ..+++|++|+++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccccccccccccccc
Confidence            44566788888888 6776553  57999999999999777788999999999999999987 333  467889999999


Q ss_pred             cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeec
Q 042715           83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQI  159 (212)
Q Consensus        83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~  159 (212)
                      +|.+. ..+..+..+++|++|+++++.+.+..+..+..+.+++.+++++|.+..   ..+..++.++.+++++|++++..
T Consensus        86 ~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            99987 446678889999999999999987777778889999999999997743   55678899999999999999777


Q ss_pred             ChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCCC
Q 042715          160 PQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       160 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      +..+..+++|++|+|++|++...++....++.++.+.+.||||.|+|.+
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            7889999999999999999996555566889999999999999999964

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-26  Score=170.29  Aligned_cols=204  Identities=21%  Similarity=0.244  Sum_probs=174.0

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccc-ccceecCC---ccccCCceEE
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEH-KQLTGRIP---SEIGKLKPIA   80 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~---~~l~~l~~l~   80 (212)
                      +++++|++++|.++...+.+|..+++|++|+++++.+....+..+..+..++.+.+.. +.+....+   ..+++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            3578999999999866667899999999999999999988888888899999987754 44442223   3456789999


Q ss_pred             cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeee
Q 042715           81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSG  157 (212)
Q Consensus        81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~  157 (212)
                      +++|.+....+..+....+|+.+++++|.+++..+..+..++.|+.|++++|.+.   +..+.++++|+.+++++|++.+
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            9999987666667788889999999999999666678888999999999999874   4678899999999999999998


Q ss_pred             ecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715          158 QIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       158 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      ..|..|..++++++|++++|.+.+.++.. ..+++++.+++++||+.|+|++
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            88999999999999999999998877653 3788999999999999999974

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=3.8e-23  Score=154.82  Aligned_cols=196  Identities=24%  Similarity=0.289  Sum_probs=146.3

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc-ccCCceEEc--
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE-IGKLKPIAA--   81 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~l~l--   81 (212)
                      +++++|++++|.++...+.+|.++++|++|+++++.+....|.+|..++.|+.|++++|.++ .++.. ...+..+..  
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~~~~l~~L~~~~  109 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHE  109 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccchhhhhhhhhccc
Confidence            57899999999999555568999999999999999999878889999999999999999876 33322 222333333  


Q ss_pred             ------------------------------------------------ccceeeeeCCCcccCCCcccEEEccCCccccc
Q 042715           82 ------------------------------------------------SSNNFRGSIPQTCKNEANLAMIELSSNLLEGR  113 (212)
Q Consensus        82 ------------------------------------------------~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  113 (212)
                                                                      .+|.+. .++..  ..+++++|++++|.....
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~  186 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKV  186 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEE
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCC
Confidence                                                            222222 11111  134566677766666656


Q ss_pred             CCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-----
Q 042715          114 VPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-----  185 (212)
Q Consensus       114 ~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----  185 (212)
                      .+..+..++.++.|++++|.+.   +..+.++++|++|+|++|+++ .+|.++..+++|++|++++|+++.....     
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             ChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCc
Confidence            6667777788888888888763   366778899999999999998 6788899999999999999998754322     


Q ss_pred             --CcccccccccccccCCCccC
Q 042715          186 --GKQFNTFETSSFDGNPGLCG  205 (212)
Q Consensus       186 --~~~~~~l~~l~l~~n~~~~~  205 (212)
                        .....+++.+++.|||+.++
T Consensus       266 ~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSSCGG
T ss_pred             chhcccCCCCEEECCCCcCccC
Confidence              12567789999999998764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=1.6e-23  Score=157.44  Aligned_cols=197  Identities=27%  Similarity=0.400  Sum_probs=167.4

Q ss_pred             eecEEEccCCcccc--ccCccccccCCCceEEccC-CeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccCCceE
Q 042715            6 DIIYIKLSGNQLTG--PIPYWLENLENISTLWLEK-NQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGKLKPI   79 (212)
Q Consensus         6 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~l   79 (212)
                      +++.|+++++.+.+  .+|+.+..+++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+..+..   +..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            68999999998875  4789999999999999987 7888889999999999999999999998666544   4567999


Q ss_pred             EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcc-cEEEccCCCC------------------------
Q 042715           80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTEL-KFLNLVSEGI------------------------  134 (212)
Q Consensus        80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~n~~------------------------  134 (212)
                      ++++|.+...+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+.++.|.+                        
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999998999999999999999999999998888888887765 7777777632                        


Q ss_pred             --CCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCc
Q 042715          135 --FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGL  203 (212)
Q Consensus       135 --~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~  203 (212)
                        .+..+..++.++.++++++.+.+.++ .+..+++++.|++++|++++.+|. ...++++++|++++|...
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence              12334567789999999999985544 578899999999999999988876 448899999999999765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.5e-22  Score=146.16  Aligned_cols=173  Identities=25%  Similarity=0.232  Sum_probs=149.2

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceec--CCccccCCceEEcc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR--IPSEIGKLKPIAAS   82 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~l~l~   82 (212)
                      +++++|++++|.+....+++|..+++|++|++++|.++.. + .+..+++|++|++++|.+...  ....+++|+.++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccccccccccccccccccccccccccc
Confidence            4799999999999966667899999999999999999843 3 457899999999999998732  22456788999999


Q ss_pred             cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeec
Q 042715           83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQI  159 (212)
Q Consensus        83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~  159 (212)
                      ++.+....+..+..+.++++|.+++|.+....+..+..++.++.+++++|.+..   ..+..+++|++|+|++|+|+ .+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence            999887667778888999999999999996666777889999999999998754   55788999999999999998 78


Q ss_pred             ChhccCCCCccEEEeeCCeee
Q 042715          160 PQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       160 ~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      |..+..+++|+.|+|++|++.
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBC
T ss_pred             ChhHCCCCCCCEEEecCCCCC
Confidence            888889999999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.5e-22  Score=148.06  Aligned_cols=207  Identities=19%  Similarity=0.200  Sum_probs=170.9

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEcc-CCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCC
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLE-KNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKL   76 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l   76 (212)
                      |.++++|++|+++++.+....+..+..+..++.+... .+.+....+..|..+++|++|++++|.+....+   ....+|
T Consensus        52 f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L  131 (284)
T d1ozna_          52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             hhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhccc
Confidence            5678999999999999997778888889999998875 556776778889999999999999998763333   234578


Q ss_pred             ceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCC
Q 042715           77 KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNN  153 (212)
Q Consensus        77 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n  153 (212)
                      +.+++.+|.++...+..+...++++.|++++|.+....+.++..+++|+.+++++|.+.   +..|.++++|++|++++|
T Consensus       132 ~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             chhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccc
Confidence            99999999998666677888899999999999999777788899999999999999874   577889999999999999


Q ss_pred             eeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCC
Q 042715          154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      ++.+..+.++..+++|++|++++|++...-+......+++.+....+...|..|
T Consensus       212 ~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p  265 (284)
T d1ozna_         212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP  265 (284)
T ss_dssp             CCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred             ccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCc
Confidence            999777789999999999999999997654332233456666666666676543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=2e-19  Score=134.34  Aligned_cols=179  Identities=22%  Similarity=0.195  Sum_probs=144.5

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCC----------------------------------
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP----------------------------------   46 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----------------------------------   46 (212)
                      |.++++|++|+++++.+....|..|..+++|++|++++|+++....                                  
T Consensus        51 f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~  130 (305)
T d1xkua_          51 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE  130 (305)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             hhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccc
Confidence            5678999999999999997778889999999999999987652221                                  


Q ss_pred             -------------CCCCCCCCccEEEcccccceecCCc-cccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccc
Q 042715           47 -------------FEIGNLKNLSTLCLEHKQLTGRIPS-EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG  112 (212)
Q Consensus        47 -------------~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~  112 (212)
                                   ..+..+++|+.+++.++.+. .++. .++++++|++.+|......+..+..++.++.|++++|.+.+
T Consensus       131 ~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~  209 (305)
T d1xkua_         131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  209 (305)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             cccccccccCCCccccccccccCccccccCCcc-ccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccc
Confidence                         11334566777777777665 3333 45678999999999888888888999999999999999997


Q ss_pred             cCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecChh------ccCCCCccEEEeeCCeee
Q 042715          113 RVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIPQQ------FGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       113 ~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~------~~~~~~L~~L~l~~n~~~  180 (212)
                      ..+.++..+++|++|++++|++.  +..+..+++|++|++++|+|+......      ....++|+.|++++|++.
T Consensus       210 ~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            77888999999999999999874  467889999999999999998543333      345688999999999985

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=4.5e-19  Score=126.99  Aligned_cols=185  Identities=21%  Similarity=0.266  Sum_probs=145.6

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEE
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIA   80 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~   80 (212)
                      .+.+|++|++.++.+. .++ .+..+++|++|++++|.+.+..  .+..+++++++++.++.++ .++  ..+++|+.+.
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~~l~~l~~L~~l~  113 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVSAIAGLQSIKTLD  113 (227)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEE
T ss_pred             HcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccccccccccccccc
Confidence            4678999999999998 454 4889999999999999988433  3789999999999999876 333  3566788899


Q ss_pred             cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec
Q 042715           81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI  159 (212)
Q Consensus        81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~  159 (212)
                      ++++.....  ..+...+.+..+.++++.+...  ..+..+++|+.|++++|.+.. ..+.++++|++|++++|++++ +
T Consensus       114 l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~-l  188 (227)
T d1h6ua2         114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-I  188 (227)
T ss_dssp             CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C
T ss_pred             ccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccchhhcccccceecccCCCccCC-C
Confidence            988876532  3355567888899988877632  346778899999999998754 557889999999999999984 4


Q ss_pred             ChhccCCCCccEEEeeCCeeecCCCCCccccccccccccc
Q 042715          160 PQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDG  199 (212)
Q Consensus       160 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~  199 (212)
                      + .+..+++|++|++++|++++.. ....++.++.+++++
T Consensus       189 ~-~l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 S-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             h-hhcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            4 3788999999999999998654 355788888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.6e-18  Score=122.60  Aligned_cols=164  Identities=21%  Similarity=0.312  Sum_probs=105.5

Q ss_pred             ccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceEEcccceeeeeCCCcccCCCcccEEEc
Q 042715           27 NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIEL  105 (212)
Q Consensus        27 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l  105 (212)
                      .+.+|++|+++++.+.. .+ .+..+++|++|++++|.+++..+ ..+++|++|++++|.++. ++ .+..+++|+.+++
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc-cc-ccccccccccccc
Confidence            45666777777766663 22 35666777777777776652111 234556667777766653 22 4566777788888


Q ss_pred             cCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCC
Q 042715          106 SSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP  184 (212)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  184 (212)
                      ++|.+. .. ..+..++.++.+++++|.+.. ..+..+++|+.+++++|++.+ ++ .+..+++|+.|++++|++++ ++
T Consensus       120 ~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~  194 (210)
T d1h6ta2         120 EHNGIS-DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR  194 (210)
T ss_dssp             TTSCCC-CC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG
T ss_pred             cccccc-cc-ccccccccccccccccccccccccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch
Confidence            777665 33 346677777888877777644 345567778888888887763 33 36777888888888887764 34


Q ss_pred             CCccccccccccccc
Q 042715          185 QGKQFNTFETSSFDG  199 (212)
Q Consensus       185 ~~~~~~~l~~l~l~~  199 (212)
                      ....+++|+.|++.+
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence            455677777777653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.6e-18  Score=132.86  Aligned_cols=189  Identities=24%  Similarity=0.358  Sum_probs=151.9

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceEE
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPIA   80 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l~   80 (212)
                      ..+++++.++++++.+.+..|  +..+++|++|++++|.++. . +.+..+++|+.+++.+|.+++..+ ...++|++++
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~  269 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK  269 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCcccccccCCEee
Confidence            356788899999998884443  4667899999999998883 3 367888999999999998874322 3456889999


Q ss_pred             cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec
Q 042715           81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI  159 (212)
Q Consensus        81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~  159 (212)
                      ++++.+...  ..+..+..++.+.+..|.+.+ . ..+..++.++.+++++|.+.. ..+..+++|++|++++|+++ .+
T Consensus       270 l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~-~l  344 (384)
T d2omza2         270 LGANQISNI--SPLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS-DV  344 (384)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCC-CC
T ss_pred             ccCcccCCC--Ccccccccccccccccccccc-c-cccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCC-CC
Confidence            999887643  246677889999999998874 3 357788999999999998865 34788999999999999998 44


Q ss_pred             ChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCC
Q 042715          160 PQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNP  201 (212)
Q Consensus       160 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~  201 (212)
                      + .+..+++|++|++++|++++.+| ...++++++|++++|.
T Consensus       345 ~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         345 S-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA  384 (384)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCEE
T ss_pred             h-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCCc
Confidence            4 58899999999999999987665 5688999999999873

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.5e-18  Score=120.62  Aligned_cols=174  Identities=26%  Similarity=0.364  Sum_probs=123.7

Q ss_pred             EccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceEEcccceeeee
Q 042715           11 KLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPIAASSNNFRGS   89 (212)
Q Consensus        11 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l~l~~n~~~~~   89 (212)
                      .++.+++.+..+  ...++++++|+++++.+.. . +.++.+++|++|++++|.++... ...+++|++|++++|.+.. 
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~-   98 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-   98 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcccccCCccccccccccccccc-
Confidence            344445443222  2457788888888888773 2 34677888888888888776322 1345677888888877653 


Q ss_pred             CCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccCCCC
Q 042715           90 IPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTS  168 (212)
Q Consensus        90 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~  168 (212)
                      + ..+..++.|++++++++.... . ..+..+++|+.+++++|.+.. ..+..+++++.|++.+|++++ ++ .+.++++
T Consensus        99 ~-~~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~  173 (199)
T d2omxa2          99 I-TPLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-LK-PLANLTT  173 (199)
T ss_dssp             C-GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTT
T ss_pred             c-ccccccccccccccccccccc-c-cccchhhhhHHhhhhhhhhcccccccccccccccccccccccC-Cc-cccCCCC
Confidence            2 246778899999998887763 2 357788899999999998754 457788999999999999974 33 4788999


Q ss_pred             ccEEEeeCCeeecCCCCCccccccccc
Q 042715          169 LEFFDVSDNLVIGPIPQGKQFNTFETS  195 (212)
Q Consensus       169 L~~L~l~~n~~~~~~~~~~~~~~l~~l  195 (212)
                      |++|++++|++++ ++....++++++|
T Consensus       174 L~~L~ls~N~i~~-i~~l~~L~~L~~L  199 (199)
T d2omxa2         174 LERLDISSNKVSD-ISVLAKLTNLESL  199 (199)
T ss_dssp             CCEEECCSSCCCC-CGGGGGCTTCSEE
T ss_pred             CCEEECCCCCCCC-CccccCCCCCCcC
Confidence            9999999999875 4444566666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=2.6e-18  Score=119.92  Aligned_cols=171  Identities=18%  Similarity=0.181  Sum_probs=101.4

Q ss_pred             CceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccCCceEEcccceeeeeCCCcccCCCcccEEEcc
Q 042715           31 ISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELS  106 (212)
Q Consensus        31 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~  106 (212)
                      .++++.+++.++ .+|..+  .+++++|++++|.++..++    ..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            356777777777 445433  2567778888887753232    234556677777776665556666666677777777


Q ss_pred             CCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCC
Q 042715          107 SNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI  183 (212)
Q Consensus       107 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~  183 (212)
                      +|.+....+.+|..+++|++|++++|.+.   +..|..+++|++++|++|.+....... .-...++.+.+..+.+....
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCC
Confidence            77666555556666667777777766653   244566666666777666665322110 01122344444555554333


Q ss_pred             CCCcccccccccccccCCCccCCC
Q 042715          184 PQGKQFNTFETSSFDGNPGLCGEP  207 (212)
Q Consensus       184 ~~~~~~~~l~~l~l~~n~~~~~~~  207 (212)
                      |.  .+..++.+++..|.+.|.++
T Consensus       166 p~--~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         166 PS--KVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             ST--TTTTSBGGGSCTTTCCCCCC
T ss_pred             Ch--hhcCCEeeecCHhhCcCCCC
Confidence            33  34456667788888888665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=3e-18  Score=119.59  Aligned_cols=169  Identities=20%  Similarity=0.227  Sum_probs=130.2

Q ss_pred             eecEEEccCCccccccCccccccCCCceEEccCCeeee-cCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEc
Q 042715            6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTG-CIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAA   81 (212)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l   81 (212)
                      ..++++.++++++ .+|..+.  +++++|++++|.++. ..+..|..+++|+.|++++|.+....+.   .+++|++|++
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            4567889999888 6776553  689999999999975 4567788999999999999998754443   4557899999


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCc-ccC-CcccccEEEccCCeeeeec
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSS-TLG-NLIVLESLDLSNNKLSGQI  159 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~-~~~~L~~L~l~~n~i~~~~  159 (212)
                      ++|.+....+..|.++++|++|++++|.++...+.+|..+++|+++++++|.+... ... -...++.+.+..+.+....
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCC
Confidence            99999977778899999999999999999977788899999999999999977431 111 1123555666777776555


Q ss_pred             ChhccCCCCccEEEeeCCeee
Q 042715          160 PQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       160 ~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      |..+   ..++.++++.|.+.
T Consensus       166 p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         166 PSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             STTT---TTSBGGGSCTTTCC
T ss_pred             Chhh---cCCEeeecCHhhCc
Confidence            6544   44556677777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.9e-17  Score=118.45  Aligned_cols=166  Identities=23%  Similarity=0.315  Sum_probs=132.8

Q ss_pred             CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceE
Q 042715            1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPI   79 (212)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l   79 (212)
                      |+++++|++|++++|.+....  .+..++++++++++++.++. . ..+..+++|+.+.++++......+ ...+.+..+
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  134 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL  134 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             HhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccccccccccccccccchhccccchhhh
Confidence            357899999999999998433  38899999999999998873 3 357899999999999987763222 234566888


Q ss_pred             EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeee
Q 042715           80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQ  158 (212)
Q Consensus        80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~  158 (212)
                      .++++.+...  ..+...+++++|++++|.+...  ..++.+++|+.|++++|.+.. ..+.++++|++|++++|++++ 
T Consensus       135 ~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~-  209 (227)
T d1h6ua2         135 YLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD-  209 (227)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB-
T ss_pred             hchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCC-
Confidence            8888776532  3466778999999999988733  347889999999999998754 457889999999999999984 


Q ss_pred             cChhccCCCCccEEEeeC
Q 042715          159 IPQQFGELTSLEFFDVSD  176 (212)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~  176 (212)
                      ++ .+..+++|++|++++
T Consensus       210 i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         210 VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CG-GGTTCTTCCEEEEEE
T ss_pred             Cc-ccccCCCCCEEEeeC
Confidence            44 378999999999974

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.4e-17  Score=126.26  Aligned_cols=166  Identities=25%  Similarity=0.339  Sum_probs=136.5

Q ss_pred             CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceEEc
Q 042715            3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPIAA   81 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l~l   81 (212)
                      .+++|++|++++|.+. .+ +.+..+++|+.+++.+|.+++..  .+..+++|+.++++++.+....+ ..+..++.+.+
T Consensus       217 ~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         217 ILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             GCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             ccCCCCEEECCCCCCC-Cc-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccc
Confidence            4678999999999987 33 46788999999999999988533  47889999999999998873222 24556788999


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecC
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIP  160 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~  160 (212)
                      ..|.+..  ...+..+++++.+++++|.+.+. + .+..+++|+.|++++|.+.. ..+.++++|++|++++|++++..|
T Consensus       293 ~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         293 NENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG
T ss_pred             ccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh
Confidence            9888764  23567788999999999999853 3 47889999999999998754 458899999999999999985443


Q ss_pred             hhccCCCCccEEEeeCCe
Q 042715          161 QQFGELTSLEFFDVSDNL  178 (212)
Q Consensus       161 ~~~~~~~~L~~L~l~~n~  178 (212)
                        +.++++|+.|++++|+
T Consensus       369 --l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         369 --LANLTRITQLGLNDQA  384 (384)
T ss_dssp             --GTTCTTCSEEECCCEE
T ss_pred             --hccCCCCCEeeCCCCc
Confidence              8899999999999985

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-16  Score=113.96  Aligned_cols=193  Identities=14%  Similarity=0.084  Sum_probs=102.4

Q ss_pred             eecEEEccCCccccccCccccccCCCceEEccCCeeee-cCCCCCCCCCCccEEEccc-ccceecCC---ccccCCceEE
Q 042715            6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTG-CIPFEIGNLKNLSTLCLEH-KQLTGRIP---SEIGKLKPIA   80 (212)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~-~~~~~~~~---~~l~~l~~l~   80 (212)
                      ++++|++++|.+....+.+|.++++|++|++++|.+.. ..+.+|..++.++++.+.. +.+....+   ..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            56666666666653334456666666666666665442 2344555666666665543 33332222   2334556666


Q ss_pred             cccceeeeeCC-CcccCCCcccEEEccCCcccccCCcccccCC-cccEEEccCCCCCC--cccCCcccccEE-EccCCee
Q 042715           81 ASSNNFRGSIP-QTCKNEANLAMIELSSNLLEGRVPKSLASCT-ELKFLNLVSEGIFS--STLGNLIVLESL-DLSNNKL  155 (212)
Q Consensus        81 l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~--~~~~~~~~L~~L-~l~~n~i  155 (212)
                      +.++.+....+ ..+..+..+..+...++.+....+..+..++ .++.+++.+|++..  .......++..+ ++++|++
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l  189 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL  189 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccccc
Confidence            66665542211 1122333444444444444433334444443 56667777766532  222233444444 4566777


Q ss_pred             eeecChhccCCCCccEEEeeCCeeecCCCC-Ccccccccccccc
Q 042715          156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFD  198 (212)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~  198 (212)
                      +...+..|.++++|++|++++|++...++. ...++.++.+++.
T Consensus       190 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            744445678888888888888888755443 2255555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.6e-16  Score=111.06  Aligned_cols=162  Identities=24%  Similarity=0.354  Sum_probs=134.1

Q ss_pred             ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEEc
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAA   81 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l   81 (212)
                      +.+|++|+++++.+. .++ .+..+++|++|++++|++++..  .+..+++|++|++++|.++ .++  ..+++|+.+++
T Consensus        45 L~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGGGGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCC-Cch-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-cccccccccccccccc
Confidence            568999999999998 444 3788999999999999998533  4688999999999999987 333  34678899999


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecC
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIP  160 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~  160 (212)
                      .+|.+..  ...+..++.++.+++++|.+.+ . ..+..+++|+.+++++|.+.. ..+.++++|+.|++++|+++ .++
T Consensus       120 ~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~-~-~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~-~l~  194 (210)
T d1h6ta2         120 EHNGISD--INGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR  194 (210)
T ss_dssp             TTSCCCC--CGGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-BCG
T ss_pred             ccccccc--cccccccccccccccccccccc-c-ccccccccccccccccccccccccccCCCCCCEEECCCCCCC-CCh
Confidence            9998753  2457778899999999998873 3 357788999999999998865 45788999999999999998 455


Q ss_pred             hhccCCCCccEEEeeC
Q 042715          161 QQFGELTSLEFFDVSD  176 (212)
Q Consensus       161 ~~~~~~~~L~~L~l~~  176 (212)
                       .+.++++|++|++++
T Consensus       195 -~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 -ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGTTCTTCSEEEEEE
T ss_pred             -hhcCCCCCCEEEccC
Confidence             589999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=5.1e-16  Score=108.68  Aligned_cols=158  Identities=29%  Similarity=0.403  Sum_probs=130.1

Q ss_pred             ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEEc
Q 042715            4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAA   81 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l   81 (212)
                      ++++++|+++++.+. .++ .+..+++|++|++++|++++..  .+..+++|++|++++|.+. .++  ..++.|+.+++
T Consensus        39 l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-cccccccccccccccc
Confidence            578999999999998 443 4788999999999999998543  3889999999999999886 333  35667899999


Q ss_pred             ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecC
Q 042715           82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIP  160 (212)
Q Consensus        82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~  160 (212)
                      +++.....  ..+..+++|+.+++++|.+. ..+ .+..+++++.|++.+|.+.. ..+.++++|++|++++|++++ ++
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~-i~  188 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-IS  188 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCccccCCCCCCEEECCCCCCCC-Cc
Confidence            98887632  35677899999999999887 443 57889999999999998865 458899999999999999984 44


Q ss_pred             hhccCCCCccEE
Q 042715          161 QQFGELTSLEFF  172 (212)
Q Consensus       161 ~~~~~~~~L~~L  172 (212)
                       .++++++|+.|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             57889998876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.66  E-value=4.5e-15  Score=112.01  Aligned_cols=63  Identities=27%  Similarity=0.262  Sum_probs=49.2

Q ss_pred             cccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCCCCCC
Q 042715          142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLPKK  211 (212)
Q Consensus       142 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~  211 (212)
                      +++|++|++++|++. .+|.   .+++|++|++++|+++. +|.  .+.++++|++++|+...-+.++..
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~-l~~--~~~~L~~L~L~~N~L~~lp~~~~~  345 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-VPE--LPQNLKQLHVEYNPLREFPDIPES  345 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             CCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCCc-ccc--ccCCCCEEECcCCcCCCCCccccc
Confidence            467999999999998 5664   36789999999999874 443  346899999999998775556654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.6e-15  Score=106.25  Aligned_cols=194  Identities=15%  Similarity=0.043  Sum_probs=139.3

Q ss_pred             cEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccCCceEEccc
Q 042715            8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGKLKPIAASS   83 (212)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~l~l~~   83 (212)
                      +.++.++.++. .+|+.+.  .++++|++++|.++...+.+|.++++|++|++++|.+...++    ..+..++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            56777777777 6666543  589999999999997777789999999999999998764433    2355678887754


Q ss_pred             -ceeeeeCCCcccCCCcccEEEccCCcccccCCc-ccccCCcccEEEccCCCCC---CcccCCc-ccccEEEccCCeeee
Q 042715           84 -NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPK-SLASCTELKFLNLVSEGIF---SSTLGNL-IVLESLDLSNNKLSG  157 (212)
Q Consensus        84 -n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~---~~~~~~~-~~L~~L~l~~n~i~~  157 (212)
                       +.+....+..+..+++|++++++++.+....+. .+..+..+..+....+.+.   ...+.++ ..++.+++++|+++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             566667777889999999999999988733222 2234445555555555443   2445554 478889999999985


Q ss_pred             ecChhccCCCCccEE-EeeCCeeecCCCC-CcccccccccccccCCCccC
Q 042715          158 QIPQQFGELTSLEFF-DVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCG  205 (212)
Q Consensus       158 ~~~~~~~~~~~L~~L-~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~  205 (212)
                      ..+..+ ...++..+ ++++|.+....+. ...+++++++++++|....-
T Consensus       168 i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         168 IHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             ECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             cccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCcc
Confidence            545444 44555554 5677888765554 45789999999999987643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.7e-16  Score=104.09  Aligned_cols=124  Identities=13%  Similarity=0.100  Sum_probs=75.8

Q ss_pred             ccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEE
Q 042715           25 LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIE  104 (212)
Q Consensus        25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~  104 (212)
                      |.++.++++|++++|+|+ .++..+..+++|+.|++++|.+..                      + ..+..+++|++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~----------------------l-~~~~~l~~L~~L~   69 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK----------------------L-DGFPLLRRLKTLL   69 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE----------------------E-CCCCCCSSCCEEE
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc----------------------c-CCcccCcchhhhh
Confidence            456667777777777777 344445566777777777776651                      1 1234455666666


Q ss_pred             ccCCcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEccCCeeeeecCh----hccCCCCccEEE
Q 042715          105 LSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSGQIPQ----QFGELTSLEFFD  173 (212)
Q Consensus       105 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~----~~~~~~~L~~L~  173 (212)
                      +++|.+....+..+..+++|+.|++++|.+..    ..+..+++|+++++++|.++ ..+.    .+..+|+|++||
T Consensus        70 ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          70 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            66666664333334556666666666665532    23456677777777777775 3342    456677777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.6e-15  Score=100.09  Aligned_cols=109  Identities=17%  Similarity=0.114  Sum_probs=87.7

Q ss_pred             cccEEEccCCcccccCCcccccCCcccEEEccCCC-CC---CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEe
Q 042715           99 NLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG-IF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDV  174 (212)
Q Consensus        99 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  174 (212)
                      ...++++.++.+. ..|..+..++++++|++.++. +.   +..|.++++|+.|++++|+|+...+.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3455777777776 556677778888888887664 42   356888999999999999998777888999999999999


Q ss_pred             eCCeeecCCCCCcccccccccccccCCCccCCCC
Q 042715          175 SDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL  208 (212)
Q Consensus       175 ~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  208 (212)
                      ++|++....+.......++.+++++||+.|+|.+
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhhccccccccccCCCcccCCchH
Confidence            9999987666666667899999999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.2e-15  Score=101.77  Aligned_cols=107  Identities=12%  Similarity=0.114  Sum_probs=74.6

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCce
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKP   78 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~   78 (212)
                      .++.++++|++++|.|+ .++..+..+++|++|++++|.+...  +.+..+++|++|++++|.+....+   ..++++++
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            35668999999999998 5677778899999999999999854  358899999999999999873222   12445555


Q ss_pred             EEcccceeeeeCC-CcccCCCcccEEEccCCccc
Q 042715           79 IAASSNNFRGSIP-QTCKNEANLAMIELSSNLLE  111 (212)
Q Consensus        79 l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~  111 (212)
                      |++++|.+..... ..+..+++|+++++++|.+.
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ceeccccccccccccccccccccchhhcCCCccc
Confidence            6665555542111 23344555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=4.1e-15  Score=95.94  Aligned_cols=103  Identities=19%  Similarity=0.229  Sum_probs=78.3

Q ss_pred             eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeee
Q 042715           78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLS  156 (212)
Q Consensus        78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~  156 (212)
                      .|++++|.++ .++ .+..+++|++|++++|.++ .+|..++.+++|+.|++++|.+.. ..+..+++|+++++++|++.
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccCccccccccCeEECCCCccC
Confidence            4555555554 333 4677788899999999888 667778888889999999988755 45778888999999999987


Q ss_pred             eec-ChhccCCCCccEEEeeCCeeecCC
Q 042715          157 GQI-PQQFGELTSLEFFDVSDNLVIGPI  183 (212)
Q Consensus       157 ~~~-~~~~~~~~~L~~L~l~~n~~~~~~  183 (212)
                      +.. ...+..+++|+.|++++|++++..
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            432 256788899999999999887543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.6e-14  Score=92.09  Aligned_cols=100  Identities=23%  Similarity=0.313  Sum_probs=66.6

Q ss_pred             cEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEEcccce
Q 042715            8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAASSNN   85 (212)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l~~n~   85 (212)
                      |.|++++|+++ .++ .+..+++|++|++++|.+. ..|..+..+++|+.|++++|.++ .++  ..+++|+++++++|.
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCccccccccCeEECCCCc
Confidence            57999999998 555 4789999999999999998 56667889999999999999887 332  123344455555554


Q ss_pred             eeeeC-CCcccCCCcccEEEccCCccc
Q 042715           86 FRGSI-PQTCKNEANLAMIELSSNLLE  111 (212)
Q Consensus        86 ~~~~~-~~~~~~~~~L~~L~l~~~~~~  111 (212)
                      +.... ...+..+++|+++++++|.+.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            44221 123344444455555544443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-15  Score=111.65  Aligned_cols=175  Identities=19%  Similarity=0.213  Sum_probs=126.3

Q ss_pred             CceeecEEEccCCccccc-cCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccc-cceec----CCccccCC
Q 042715            3 LCFDIIYIKLSGNQLTGP-IPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK-QLTGR----IPSEIGKL   76 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~----~~~~l~~l   76 (212)
                      ...+|++|+++++.+... +...+..+++|++|+++++.+....+..+..+++|++|++++| .++..    +....++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            356889999999887633 4556788999999999999887656667788899999999986 44421    22456789


Q ss_pred             ceEEcccce-eee-eCCCccc-CCCcccEEEccCCc--ccc-cCCcccccCCcccEEEccCCCCCC----cccCCccccc
Q 042715           77 KPIAASSNN-FRG-SIPQTCK-NEANLAMIELSSNL--LEG-RVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLE  146 (212)
Q Consensus        77 ~~l~l~~n~-~~~-~~~~~~~-~~~~L~~L~l~~~~--~~~-~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~  146 (212)
                      ++|+++++. ++. .....+. ..+.|+.|+++++.  +++ .+......+++|++|++++|..+.    ..+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            999998864 322 1111222 24679999998763  332 222334578899999999876432    4456788999


Q ss_pred             EEEccCC-eeeeecChhccCCCCccEEEeeCC
Q 042715          147 SLDLSNN-KLSGQIPQQFGELTSLEFFDVSDN  177 (212)
Q Consensus       147 ~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n  177 (212)
                      +|++++| .+++.....+..+++|++|+++++
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            9999985 677666677888999999999987

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.38  E-value=3.4e-15  Score=104.16  Aligned_cols=42  Identities=24%  Similarity=0.340  Sum_probs=18.9

Q ss_pred             ccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccce
Q 042715           23 YWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT   66 (212)
Q Consensus        23 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   66 (212)
                      ..+..+++|++|++++|.++. ++ .+..+++|+.|++++|.+.
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc
Confidence            344444555555555554442 21 2444444444444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.6e-14  Score=104.47  Aligned_cols=179  Identities=17%  Similarity=0.200  Sum_probs=124.0

Q ss_pred             CCceeecEEEccCCccccccCccccccCCCceEEccCC-eeeec-CCCCCCCCCCccEEEccccc-ceec-C---Cc-cc
Q 042715            2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKN-QLTGC-IPFEIGNLKNLSTLCLEHKQ-LTGR-I---PS-EI   73 (212)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~-~---~~-~l   73 (212)
                      ++|++|++|+++++.+....+..+..+++|++|+++++ .++.. .......+++|++|++++|. ++.. +   .. ..
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~  147 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  147 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             HhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccc
Confidence            57899999999999988777778889999999999996 44421 11123568999999999873 3311 1   11 23


Q ss_pred             cCCceEEcccce--eee-eCCCcccCCCcccEEEccCC-cccccCCcccccCCcccEEEccCCCC-CC---cccCCcccc
Q 042715           74 GKLKPIAASSNN--FRG-SIPQTCKNEANLAMIELSSN-LLEGRVPKSLASCTELKFLNLVSEGI-FS---STLGNLIVL  145 (212)
Q Consensus        74 ~~l~~l~l~~n~--~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~-~~---~~~~~~~~L  145 (212)
                      +.++.|+++++.  ++. .+......+++|++|++++| .+++.....+..+++|++|++++|.. .+   ..+..+++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            578999998653  222 12223456789999999987 46655666788899999999999754 33   345678999


Q ss_pred             cEEEccCCeeee-ecChhccCCCCccEEEeeCCeeecCCC
Q 042715          146 ESLDLSNNKLSG-QIPQQFGELTSLEFFDVSDNLVIGPIP  184 (212)
Q Consensus       146 ~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~  184 (212)
                      +.|+++++ +.+ .+......+|+|+   +..+.++...+
T Consensus       228 ~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~  263 (284)
T d2astb2         228 KTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIAR  263 (284)
T ss_dssp             CEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTC
T ss_pred             CEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCC
Confidence            99999988 432 2233334566665   46666665433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=3.7e-15  Score=103.98  Aligned_cols=90  Identities=24%  Similarity=0.273  Sum_probs=54.6

Q ss_pred             ccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecC-hhccCCCCccE
Q 042715           94 CKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIP-QQFGELTSLEF  171 (212)
Q Consensus        94 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~  171 (212)
                      +..+++|++|++++|.+. .++.....++.|+.|++++|.+.. ..+..+++|+.|++++|++.+... ..+..+++|++
T Consensus        66 l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T d1m9la_          66 LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             ccCCccccChhhcccccc-cccccccccccccccccccccccccccccccccccccccccchhccccccccccCCCccce
Confidence            455566666666666665 444444444566777777666543 335566677777777777763211 35667777777


Q ss_pred             EEeeCCeeecCCC
Q 042715          172 FDVSDNLVIGPIP  184 (212)
Q Consensus       172 L~l~~n~~~~~~~  184 (212)
                      |++++|++....+
T Consensus       145 L~L~~N~l~~~~~  157 (198)
T d1m9la_         145 LLLAGNPLYNDYK  157 (198)
T ss_dssp             EEECSSHHHHHHC
T ss_pred             eecCCCccccCcc
Confidence            7777777654433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.30  E-value=3.4e-14  Score=107.33  Aligned_cols=109  Identities=19%  Similarity=0.188  Sum_probs=69.3

Q ss_pred             CCCcccEEEccCCccccc-----CCcccccCCcccEEEccCCCCCC-------cccCCcccccEEEccCCeeeeecC---
Q 042715           96 NEANLAMIELSSNLLEGR-----VPKSLASCTELKFLNLVSEGIFS-------STLGNLIVLESLDLSNNKLSGQIP---  160 (212)
Q Consensus        96 ~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~n~i~~~~~---  160 (212)
                      ....+++|++++|.+...     ....+..+++|+.|++++|.+..       ..+..+++|++|++++|.|.+...   
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            456778888888776531     22345667778888888887632       345567778888888888765422   


Q ss_pred             -hhccC--CCCccEEEeeCCeeecC----CCCCc--ccccccccccccCCCcc
Q 042715          161 -QQFGE--LTSLEFFDVSDNLVIGP----IPQGK--QFNTFETSSFDGNPGLC  204 (212)
Q Consensus       161 -~~~~~--~~~L~~L~l~~n~~~~~----~~~~~--~~~~l~~l~l~~n~~~~  204 (212)
                       ..+..  .+.+++|++++|.+...    +....  +.+.++.+++.+|....
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence             23332  35688888888877531    11111  35678888888887654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.28  E-value=1.4e-13  Score=103.91  Aligned_cols=179  Identities=17%  Similarity=0.218  Sum_probs=115.4

Q ss_pred             CceeecEEEccCCccccc----cCccccccCCCceEEccCCeeeecCCCC-------------CCCCCCccEEEcccccc
Q 042715            3 LCFDIIYIKLSGNQLTGP----IPYWLENLENISTLWLEKNQLTGCIPFE-------------IGNLKNLSTLCLEHKQL   65 (212)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~   65 (212)
                      .+++|+.|++++|.+...    +...+..+++|++|++++|.+.......             ....+.|+.+.++++.+
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            355666677766665532    2333445566777777666543110000             12345666777766655


Q ss_pred             eecCC-------ccccCCceEEcccceeeee-----CCCcccCCCcccEEEccCCccccc----CCcccccCCcccEEEc
Q 042715           66 TGRIP-------SEIGKLKPIAASSNNFRGS-----IPQTCKNEANLAMIELSSNLLEGR----VPKSLASCTELKFLNL  129 (212)
Q Consensus        66 ~~~~~-------~~l~~l~~l~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l  129 (212)
                      .....       .....+++|++++|.+...     +...+...++|+.|++++|.++..    +...+..+++|++|++
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            42111       2234678999999887542     234566778999999999987632    3345678899999999


Q ss_pred             cCCCCCC-------cccC--CcccccEEEccCCeeeee----cChhcc-CCCCccEEEeeCCeeec
Q 042715          130 VSEGIFS-------STLG--NLIVLESLDLSNNKLSGQ----IPQQFG-ELTSLEFFDVSDNLVIG  181 (212)
Q Consensus       130 ~~n~~~~-------~~~~--~~~~L~~L~l~~n~i~~~----~~~~~~-~~~~L~~L~l~~n~~~~  181 (212)
                      ++|.+..       ..+.  ..+.|++|++++|.|.+.    +...+. +.+.|++|++++|.+..
T Consensus       251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            9998754       2222  346799999999998743    233332 57889999999999864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.4e-12  Score=83.34  Aligned_cols=106  Identities=20%  Similarity=0.184  Sum_probs=54.7

Q ss_pred             eecEEEccCCccccccCccccccCCCceEEccCC-eeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccc
Q 042715            6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKN-QLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSN   84 (212)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n   84 (212)
                      ..+.++..++++. ..|..+..+++|++|++.++ .++...+++|..+++|+.|++++|.+.                  
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~------------------   69 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR------------------   69 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC------------------
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC------------------
Confidence            3444555555554 34455555666666666544 355444555556666666666655554                  


Q ss_pred             eeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC
Q 042715           85 NFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI  134 (212)
Q Consensus        85 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  134 (212)
                         ...+..|..+++|++|++++|.+....+..+ ....|+.|++++|.+
T Consensus        70 ---~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          70 ---FVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPL  115 (156)
T ss_dssp             ---EECTTGGGSCSCCCEEECCSSCCSCCCSTTT-CSCCCCEEECCSSCC
T ss_pred             ---CcccccccccccccceeccCCCCcccChhhh-ccccccccccCCCcc
Confidence               2223445555566666666666652222222 223455555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.26  E-value=2.2e-10  Score=85.79  Aligned_cols=162  Identities=21%  Similarity=0.279  Sum_probs=110.9

Q ss_pred             eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccc
Q 042715            5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSN   84 (212)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n   84 (212)
                      .+++.|++++++++ .+|+.   .++|++|++++|.++ .+|+.   +.+|+.|++.+|.+. .++.-.+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~lp~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDLPPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSCCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhhcccccccccccc
Confidence            35788999999887 57753   468999999999888 55643   467888899988887 55544456889999999


Q ss_pred             eeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeee-----
Q 042715           85 NFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQ-----  158 (212)
Q Consensus        85 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~-----  158 (212)
                      .+. .+| .++.+++|++++++++.+. ..+..   ...+..+.+..+.... ..+..++.++.+++.+|.....     
T Consensus       109 ~l~-~lp-~~~~l~~L~~L~l~~~~~~-~~~~~---~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~  182 (353)
T d1jl5a_         109 QLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL  182 (353)
T ss_dssp             CCS-SCC-CCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred             ccc-ccc-chhhhccceeecccccccc-ccccc---cccccchhhccccccccccccccccceecccccccccccccccc
Confidence            876 444 3567788999999888776 33332   3456667776665433 4456677788888877765421     


Q ss_pred             -------------cChhccCCCCccEEEeeCCeeec
Q 042715          159 -------------IPQQFGELTSLEFFDVSDNLVIG  181 (212)
Q Consensus       159 -------------~~~~~~~~~~L~~L~l~~n~~~~  181 (212)
                                   ....+..++.++.+++++|....
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (353)
T d1jl5a_         183 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT  218 (353)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence                         01123445667777777766543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.4e-10  Score=88.39  Aligned_cols=197  Identities=17%  Similarity=0.062  Sum_probs=113.1

Q ss_pred             ecEEEccCCccccc----cCccccccCCCceEEccCCeeee-----cCCCCCCCCCCccEEEcccccceecCC-------
Q 042715            7 IIYIKLSGNQLTGP----IPYWLENLENISTLWLEKNQLTG-----CIPFEIGNLKNLSTLCLEHKQLTGRIP-------   70 (212)
Q Consensus         7 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~-------   70 (212)
                      ...+++..+.+...    ....+...+.++.+++.++.+..     ...........++.+++++|.+.....       
T Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l  279 (460)
T d1z7xw1         200 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL  279 (460)
T ss_dssp             CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccc
Confidence            34556665554311    22234456777888887776431     122334456678888888776652211       


Q ss_pred             ccccCCceEEcccceeeeeCC----Cc-ccCCCcccEEEccCCcccccCC----cccccCCcccEEEccCCCCCC-----
Q 042715           71 SEIGKLKPIAASSNNFRGSIP----QT-CKNEANLAMIELSSNLLEGRVP----KSLASCTELKFLNLVSEGIFS-----  136 (212)
Q Consensus        71 ~~l~~l~~l~l~~n~~~~~~~----~~-~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~-----  136 (212)
                      ...+.+..+++++|.+.....    .. ......++.++++++.+.....    ..+...++|++|++++|.+..     
T Consensus       280 ~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~  359 (460)
T d1z7xw1         280 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE  359 (460)
T ss_dssp             HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred             cccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccch
Confidence            223456777777776643111    11 1223467888888887663322    223445678888888887632     


Q ss_pred             --ccc-CCcccccEEEccCCeeeee----cChhccCCCCccEEEeeCCeeecCCCCC------cccccccccccccCCCc
Q 042715          137 --STL-GNLIVLESLDLSNNKLSGQ----IPQQFGELTSLEFFDVSDNLVIGPIPQG------KQFNTFETSSFDGNPGL  203 (212)
Q Consensus       137 --~~~-~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~------~~~~~l~~l~l~~n~~~  203 (212)
                        ..+ ...+.|++|++++|.+++.    ++..+..+++|++|++++|++.......      .....++.+.+.+|.+.
T Consensus       360 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence              112 2456688888888888643    3445566788888888888875321110      02235777777777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.5e-09  Score=83.89  Aligned_cols=178  Identities=21%  Similarity=0.160  Sum_probs=120.5

Q ss_pred             ceeecEEEccCCcccc-----ccCccccccCCCceEEccCCeeeec----CCCCCCCCCCccEEEcccccceecC-----
Q 042715            4 CFDIIYIKLSGNQLTG-----PIPYWLENLENISTLWLEKNQLTGC----IPFEIGNLKNLSTLCLEHKQLTGRI-----   69 (212)
Q Consensus         4 l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~-----   69 (212)
                      .+.++.+++.++.+..     .....+.....++.+++++|.+...    ....+...+.++.+++++|.+....     
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            4667888888887542     2333445578899999999876522    1223455788899999998875321     


Q ss_pred             ---CccccCCceEEcccceeeeeCC----CcccCCCcccEEEccCCccccc----CCcccc-cCCcccEEEccCCCCCC-
Q 042715           70 ---PSEIGKLKPIAASSNNFRGSIP----QTCKNEANLAMIELSSNLLEGR----VPKSLA-SCTELKFLNLVSEGIFS-  136 (212)
Q Consensus        70 ---~~~l~~l~~l~l~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~n~~~~-  136 (212)
                         ......++.+.++++.++....    ..+....+|++|++++|.+.+.    ++..+. ..+.|+.|++++|.+.. 
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence               1223467889998887764322    2234456899999999988642    222332 34679999999998754 


Q ss_pred             ------cccCCcccccEEEccCCeeeeecCh----hccC-CCCccEEEeeCCeeec
Q 042715          137 ------STLGNLIVLESLDLSNNKLSGQIPQ----QFGE-LTSLEFFDVSDNLVIG  181 (212)
Q Consensus       137 ------~~~~~~~~L~~L~l~~n~i~~~~~~----~~~~-~~~L~~L~l~~n~~~~  181 (212)
                            ..+..+++|++|++++|++++....    .+.. ...|+.|++.+|.+..
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence                  2345678999999999999754332    3332 3469999999998864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1e-08  Score=68.45  Aligned_cols=39  Identities=23%  Similarity=0.089  Sum_probs=16.3

Q ss_pred             cccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee
Q 042715          142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI  180 (212)
Q Consensus       142 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  180 (212)
                      +++|+.|++++|.|.+.......+...++.|++++|++.
T Consensus        90 l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          90 APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             STTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            444445555555444222212222333444555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.9e-07  Score=62.09  Aligned_cols=83  Identities=18%  Similarity=0.154  Sum_probs=55.7

Q ss_pred             cCccccccCCCceEEccCCeeeecC--CCCCCCCCCccEEEcccccceecCCc----cccCCceEEcccceeeeeCCC--
Q 042715           21 IPYWLENLENISTLWLEKNQLTGCI--PFEIGNLKNLSTLCLEHKQLTGRIPS----EIGKLKPIAASSNNFRGSIPQ--   92 (212)
Q Consensus        21 ~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~l~l~~n~~~~~~~~--   92 (212)
                      ++..+..+++|++|++++|.++...  +..+..+++|+.|++++|.+. .++.    ...+++++++.+|++......  
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccch
Confidence            3344567888999999999887432  234567888999999999887 3322    223568888888887643321  


Q ss_pred             -----cccCCCcccEEE
Q 042715           93 -----TCKNEANLAMIE  104 (212)
Q Consensus        93 -----~~~~~~~L~~L~  104 (212)
                           .+..+++|+.|+
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                 244577888774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=2.3e-06  Score=56.98  Aligned_cols=85  Identities=14%  Similarity=0.088  Sum_probs=53.8

Q ss_pred             ccCCCcccEEEccCCcccccC----CcccccCCcccEEEccCCCCCC-------cccCCcccccEEEccCCeeee-----
Q 042715           94 CKNEANLAMIELSSNLLEGRV----PKSLASCTELKFLNLVSEGIFS-------STLGNLIVLESLDLSNNKLSG-----  157 (212)
Q Consensus        94 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~n~i~~-----  157 (212)
                      +...+.|++|++++|.+....    ...+...+.|+.|++++|.+.+       ..+...+.|++|++++|.+..     
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            334456777788777765322    2233455678888888876643       345566778888888775431     


Q ss_pred             --ecChhccCCCCccEEEeeCCe
Q 042715          158 --QIPQQFGELTSLEFFDVSDNL  178 (212)
Q Consensus       158 --~~~~~~~~~~~L~~L~l~~n~  178 (212)
                        .+...+...++|+.|+++.+.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCCC
Confidence              134455567888888887664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=1.1e-06  Score=58.56  Aligned_cols=17  Identities=18%  Similarity=0.368  Sum_probs=8.1

Q ss_pred             CCCCCccEEEcccccce
Q 042715           50 GNLKNLSTLCLEHKQLT   66 (212)
Q Consensus        50 ~~l~~L~~L~l~~~~~~   66 (212)
                      ...+.|+.|++++|.+.
T Consensus        41 ~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          41 CNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TTCSCCCEEECTTSCCB
T ss_pred             hhCCccceeeccccccc
Confidence            34444555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.12  E-value=1.3e-05  Score=53.12  Aligned_cols=41  Identities=5%  Similarity=0.035  Sum_probs=22.1

Q ss_pred             cccCCCceEEccCC-eeee----cCCCCCCCCCCccEEEcccccce
Q 042715           26 ENLENISTLWLEKN-QLTG----CIPFEIGNLKNLSTLCLEHKQLT   66 (212)
Q Consensus        26 ~~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~   66 (212)
                      ...++|++|+++++ .++.    ....++...+.|++|++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            34566666666653 3331    12233445666777777766654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.05  E-value=2.9e-05  Score=51.29  Aligned_cols=86  Identities=19%  Similarity=0.145  Sum_probs=52.4

Q ss_pred             ccCCCcccEEEccCCccccc----CCcccccCCcccEEEccCCCCCC-------cccCCcccccEEEcc--CCeeee---
Q 042715           94 CKNEANLAMIELSSNLLEGR----VPKSLASCTELKFLNLVSEGIFS-------STLGNLIVLESLDLS--NNKLSG---  157 (212)
Q Consensus        94 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~--~n~i~~---  157 (212)
                      +...+.|++|++++|.+...    +...+...+.++.+++.++.+.+       ..+...+.|+.++|.  +|.+.+   
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            33456677777777766532    22334455677777777776533       344556667765554  556653   


Q ss_pred             -ecChhccCCCCccEEEeeCCee
Q 042715          158 -QIPQQFGELTSLEFFDVSDNLV  179 (212)
Q Consensus       158 -~~~~~~~~~~~L~~L~l~~n~~  179 (212)
                       .+...+...+.|+.|+++.+..
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCcCEEeCcCCCC
Confidence             2445556778888888876643