Citrus Sinensis ID: 042725

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
MFLCNKTVLLLLLLLTVLSLSAQASSNNNTTFSVSFALISRRFSHDDLSPSYYSSFVSQTKQNRKVARAPSLRYRSKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECSRSA
cccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEccccccccEEEEcccccccccEEEccccccccHHHHHccccEEEcccccccccccccccccccccccccccccccccEEccccccccccccccEEEEEEEEEEccEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccEEccccccccccccEEEEEEccccEEEEccccEEEEEcccEEEEEEEEcccccccEEEEEEEEEEEEEEEEEccccEEEEEEccccccc
ccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccccccccccccccHHHccccccccccccccccccEEEEEEEccccccccEEEEEEEEEccccccccEEEEccccccccccEEEcccccccHHHHcccccEEEEEcccccccccccccEEEEcccccccccccccccccccccccccccccEEEEEEEEEEEccEEccccHHHEccccccccEEEEEcccEEEcccHHHHHHHHHHHHHHHccccccccccccccccEEccccccccccccEEEEEEccccEEEcccccEEEEccccEEEEEEEccccccccEEEEEEEEEccEEEEEEccccEEEEccccHHHcc
MFLCNKTVLLLLLLLTVLSLsaqassnnnttFSVSFALISRrfshddlspsyysSFVSQtkqnrkvarapslryrskFKYSMALVVslpigtppqtqemvldtgsqlswikchkkapappttsfdpsrsssfsvlpcthplckprivdftlptdcdqnrlchysyfyadgtfaegnlvkekftfsaaqSTLPLILGcakdtsedkgilgmnlgrLSFASQAKIskfsycvptrvsrvgytptgsfylgenpnsagfryvsfltfpqsqrspnldplaysvpmqgvriqgkrldipatafhpdasgsgqtivdsgseFTYLVDVAYNKIKEEIVRLagprmkkgyvyggvadmcfdgnaMEVGRLIGDMVFEFERGVEILIEKERVLAdvgggvhcvgIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECSRSA
MFLCNKTVLLLLLLLTVLSLSaqassnnnttFSVSFALISRRFSHDDLSPSYYSSfvsqtkqnrkvarapslryrsKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAfhpdasgsgqtivDSGSEFTYLVDVAYNKIKEEIVrlagprmkkgYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECSRSA
MFLCNKtvllllllltvlslsaqassnnnttfsvsfALISRRFSHDDLSPSYYSSFVSQTKQNRKVARAPSLRYRSKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAppttsfdpsrsssfsVLPCTHPLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECSRSA
*FLCNKTVLLLLLLLTVLSLSAQASSNNNTTFSVSFALISRRFSHDDL**SYYS*F***************LRYRSKFKYSMALVVSLPIGTP****EMVLDTGSQLSWIKCH******************FSVLPCTHPLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFP**********LAYSVPMQGVRIQGKRLDIPATAF*********TIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFA********
****NKTVLLLLLLLTVLSLSAQ********************************************************YSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFD***********C***LCKPR**************LCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNLGRLSFASQAKISKFSYCVPTRV***************NPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVR*************GVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECS***
MFLCNKTVLLLLLLLTVLSLSAQASSNNNTTFSVSFALISRRFSHDDLSPSYYSSF************APSLRYRSKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCH********************VLPCTHPLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGF*********
*FLCNKTVLLLLLLLTVLSLSAQASSNNNTTFSVSFALISRRFSHDDLSPSY*************************FKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAEC****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFLCNKTVLLLLLLLTVLSLSAQASSNNNTTFSVSFALISRRFSHDDLSPSYYSSFVSQTKQNRKVARAPSLRYRSKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECSRSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query441 2.2.26 [Sep-21-2011]
Q9LZL3453 Aspartic proteinase PCS1 no no 0.764 0.743 0.352 1e-62
Q766C2438 Aspartic proteinase nepen N/A no 0.746 0.751 0.314 5e-39
Q766C3437 Aspartic proteinase nepen N/A no 0.798 0.805 0.298 8e-38
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.730 0.644 0.272 2e-27
Q3EBM5447 Probable aspartic proteas no no 0.902 0.890 0.241 7e-19
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.727 0.682 0.271 1e-18
Q9S9K4475 Aspartic proteinase-like no no 0.712 0.661 0.250 1e-17
Q6XBF8437 Aspartic proteinase CDR1 no no 0.734 0.741 0.222 2e-11
Q9LX20528 Aspartic proteinase-like no no 0.707 0.590 0.242 2e-10
Q0IU52410 Aspartic proteinase Asp1 no no 0.730 0.785 0.227 2e-09
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  241 bits (614), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 203/377 (53%), Gaps = 40/377 (10%)

Query: 93  PPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLP 152
           PPQ   MV+DTGS+LSW++C++ +   P  +FDP+RSSS+S +PC+ P C+ R  DF +P
Sbjct: 82  PPQNISMVIDTGSELSWLRCNRSSNPNPVNNFDPTRSSSYSPIPCSSPTCRTRTRDFLIP 141

Query: 153 TDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGC-----AKDTSED--- 204
             CD ++LCH +  YAD + +EGNL  E F F  + +   LI GC       D  ED   
Sbjct: 142 ASCDSDKLCHATLSYADASSSEGNLAAEIFHFGNSTNDSNLIFGCMGSVSGSDPEEDTKT 201

Query: 205 KGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTF 264
            G+LGMN G LSF SQ    KFSYC+       G+       LG+    + F +++ L +
Sbjct: 202 TGLLGMNRGSLSFISQMGFPKFSYCISGTDDFPGF-----LLLGD----SNFTWLTPLNY 252

Query: 265 PQSQRS----PNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYL 320
               R     P  D +AY+V + G+++ GK L IP +   PD +G+GQT+VDSG++FT+L
Sbjct: 253 TPLIRISTPLPYFDRVAYTVQLTGIKVNGKLLPIPKSVLVPDHTGAGQTMVDSGTQFTFL 312

Query: 321 VDVAYNKIKEEIVRLAGPRM----KKGYVYGGVADMCFDGNAMEVGRLI------GDMVF 370
           +   Y  ++   +      +       +V+ G  D+C+  + + +   I        +VF
Sbjct: 313 LGPVYTALRSHFLNRTNGILTVYEDPDFVFQGTMDLCYRISPVRIRSGILHRLPTVSLVF 372

Query: 371 EFERGVEILIEKERVLADV------GGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFD 424
           E   G EI +  + +L  V         V+C   G S+++G+ + + G+ HQQN+W+EFD
Sbjct: 373 E---GAEIAVSGQPLLYRVPHLTVGNDSVYCFTFGNSDLMGMEAYVIGHHHQQNMWIEFD 429

Query: 425 LASRRVGFAKAECSRSA 441
           L   R+G A  EC  S 
Sbjct: 430 LQRSRIGLAPVECDVSG 446
Embryo-specific aspartic protease that limits programmed cell death during reproductive development. Possesses peptidase activity toward casein in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
224079535436 predicted protein [Populus trichocarpa] 0.945 0.956 0.750 0.0
224065128441 predicted protein [Populus trichocarpa] 0.961 0.961 0.728 0.0
255583547440 Aspartic proteinase nepenthesin-1 precur 0.857 0.859 0.760 1e-177
356539818457 PREDICTED: aspartic proteinase nepenthes 0.981 0.947 0.665 1e-172
357460823431 Aspartic proteinase nepenthesin-1 [Medic 0.963 0.986 0.678 1e-171
356553263445 PREDICTED: aspartic proteinase nepenthes 0.816 0.808 0.768 1e-170
297801286444 aspartyl protease family protein [Arabid 0.909 0.903 0.721 1e-170
359488213434 PREDICTED: aspartic proteinase nepenthes 0.950 0.965 0.675 1e-170
18421660442 aspartyl protease family protein [Arabid 0.904 0.902 0.719 1e-170
18408451430 aspartyl protease-like protein [Arabidop 0.841 0.862 0.739 1e-167
>gi|224079535|ref|XP_002305886.1| predicted protein [Populus trichocarpa] gi|222848850|gb|EEE86397.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/421 (75%), Positives = 361/421 (85%), Gaps = 4/421 (0%)

Query: 23  QASSNNNTTFSVSFALISRRFSHDDLSPSYYSSFVSQTKQNRKVARAPS-LRYRSKFKYS 81
           Q +   N + S SF L S   S    SPS+YSSF+SQ K+   +  A S   YRS+FKYS
Sbjct: 16  QETQLKNDSLSFSFPLTSLPRS-PQTSPSFYSSFISQAKKTPALKSAASPYNYRSRFKYS 74

Query: 82  MALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAP--APPTTSFDPSRSSSFSVLPCTH 139
           M L+VSLPIGTPPQ+Q+M+LDTGSQLSWI+CHKK P   PP+T FDPS SSSFSVLPC H
Sbjct: 75  MILLVSLPIGTPPQSQQMILDTGSQLSWIQCHKKVPRKPPPSTVFDPSLSSSFSVLPCNH 134

Query: 140 PLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAK 199
           PLCKPRI DFTLPT CD NRLCHYSYFYADGT AEGNLV+EK TFS +QST PLILGCA+
Sbjct: 135 PLCKPRIPDFTLPTSCDLNRLCHYSYFYADGTLAEGNLVREKITFSTSQSTPPLILGCAE 194

Query: 200 DTSEDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYV 259
           D S+DKGILGMNLGRLSFASQAKI+KFSYCVPTR  R G+TPTGSFYLGENPNSAGF+Y+
Sbjct: 195 DASDDKGILGMNLGRLSFASQAKITKFSYCVPTRQVRPGFTPTGSFYLGENPNSAGFQYI 254

Query: 260 SFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTY 319
           S LTF QSQR PNLDPLA++V +QG+RI  K+L+IP +AF  D SG+GQ+++DSGSEFTY
Sbjct: 255 SLLTFSQSQRMPNLDPLAHTVALQGIRIGNKKLNIPVSAFRADPSGAGQSMIDSGSEFTY 314

Query: 320 LVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEIL 379
           LVDVAYNK++EE+VRLAGPR+KKGYVY GV+DMCFDGNAME+GRLIG+MVFEF++GVEI+
Sbjct: 315 LVDVAYNKVREEVVRLAGPRLKKGYVYSGVSDMCFDGNAMEIGRLIGNMVFEFDKGVEIV 374

Query: 380 IEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECSR 439
           IEK RVLADVGGGVHCVGIGRSEMLG ASNI GNFHQQNLWVEFD+A+RRVGF KA+CSR
Sbjct: 375 IEKGRVLADVGGGVHCVGIGRSEMLGAASNIIGNFHQQNLWVEFDIANRRVGFGKADCSR 434

Query: 440 S 440
           S
Sbjct: 435 S 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224065128|ref|XP_002301682.1| predicted protein [Populus trichocarpa] gi|222843408|gb|EEE80955.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255583547|ref|XP_002532530.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223527742|gb|EEF29846.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356539818|ref|XP_003538390.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|357460823|ref|XP_003600693.1| Aspartic proteinase nepenthesin-1 [Medicago truncatula] gi|355489741|gb|AES70944.1| Aspartic proteinase nepenthesin-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356553263|ref|XP_003544977.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|297801286|ref|XP_002868527.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297314363|gb|EFH44786.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359488213|ref|XP_002263620.2| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|18421660|ref|NP_568551.1| aspartyl protease family protein [Arabidopsis thaliana] gi|10177438|dbj|BAB10671.1| unnamed protein product [Arabidopsis thaliana] gi|15809850|gb|AAL06853.1| AT5g37540/mpa22_p_70 [Arabidopsis thaliana] gi|20260182|gb|AAM12989.1| unknown protein [Arabidopsis thaliana] gi|23197748|gb|AAN15401.1| unknown protein [Arabidopsis thaliana] gi|332006821|gb|AED94204.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18408451|ref|NP_564867.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|12322615|gb|AAG51309.1|AC026480_16 unknown protein [Arabidopsis thaliana] gi|14334808|gb|AAK59582.1| unknown protein [Arabidopsis thaliana] gi|15293195|gb|AAK93708.1| unknown protein [Arabidopsis thaliana] gi|332196351|gb|AEE34472.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
TAIR|locus:2169886442 AT5G37540 [Arabidopsis thalian 0.884 0.882 0.702 2e-150
TAIR|locus:2013865430 AT1G66180 [Arabidopsis thalian 0.841 0.862 0.706 1e-146
TAIR|locus:2043245442 AT2G39710 [Arabidopsis thalian 0.809 0.807 0.355 1.6e-56
TAIR|locus:2185173453 PCS1 "PROMOTION OF CELL SURVIV 0.800 0.779 0.344 6.8e-56
TAIR|locus:2056916461 AT2G03200 [Arabidopsis thalian 0.764 0.731 0.293 7.7e-32
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.748 0.683 0.306 1.6e-31
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.741 0.674 0.307 3e-30
TAIR|locus:2087790461 NANA "NANA" [Arabidopsis thali 0.829 0.793 0.286 6.2e-30
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.739 0.652 0.276 4e-28
TAIR|locus:2102335452 AT3G25700 [Arabidopsis thalian 0.773 0.754 0.267 2.1e-26
TAIR|locus:2169886 AT5G37540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1468 (521.8 bits), Expect = 2.0e-150, P = 2.0e-150
 Identities = 279/397 (70%), Positives = 322/397 (81%)

Query:    48 LSPSYYSSFVSQTKQNRKVARAPSLRY--RSKFKYSMALVVSLPIGTPPQTQEMVLDTGS 105
             L+P+  SS    +  +R+    PS  Y  RS  KYSMAL++SLPIGTP Q+QE+VLDTGS
Sbjct:    42 LTPTTNSSSFKTSLLSRRNPSPPSSPYTFRSNIKYSMALILSLPIGTPSQSQELVLDTGS 101

Query:   106 QLSWIKCH----KKAPAXXXXXXXXXXXXXXXVLPCTHPLCKPRIVDFTLPTDCDQNRLC 161
             QLSWI+CH    KK                   LPC+HPLCKPRI DFTLPT CD NRLC
Sbjct:   102 QLSWIQCHPKKIKKPLPPPTTSFDPSLSSSFSDLPCSHPLCKPRIPDFTLPTSCDSNRLC 161

Query:   162 HYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNLGRLSFASQA 221
             HYSYFYADGTFAEGNLVKEKFTFS +Q+T PLILGCAK+++++KGILGMNLGRLSF SQA
Sbjct:   162 HYSYFYADGTFAEGNLVKEKFTFSNSQTTPPLILGCAKESTDEKGILGMNLGRLSFISQA 221

Query:   222 KISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVP 281
             KISKFSYC+PTR +R G   TGSFYLG+NPNS GF+YVS LTFPQSQR PNLDPLAY+VP
Sbjct:   222 KISKFSYCIPTRSNRPGLASTGSFYLGDNPNSRGFKYVSLLTFPQSQRMPNLDPLAYTVP 281

Query:   282 MQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMK 341
             +QG+RI  KRL+IP + F PDA GSGQT+VDSGSEFT+LVDVAY+K+KEEIVRL G R+K
Sbjct:   282 LQGIRIGQKRLNIPGSVFRPDAGGSGQTMVDSGSEFTHLVDVAYDKVKEEIVRLVGSRLK 341

Query:   342 KGYVYGGVADMCFDGN-AMEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGR 400
             KGYVYG  ADMCFDGN +ME+GRLIGD+VFEF RGVEIL+EK+ +L +VGGG+HCVGIGR
Sbjct:   342 KGYVYGSTADMCFDGNHSMEIGRLIGDLVFEFGRGVEILVEKQSLLVNVGGGIHCVGIGR 401

Query:   401 SEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAEC 437
             S MLG ASNI GN HQQNLWVEFD+ +RRVGF+KAEC
Sbjct:   402 SSMLGAASNIIGNVHQQNLWVEFDVTNRRVGFSKAEC 438
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
TAIR|locus:2013865 AT1G66180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043245 AT2G39710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185173 PCS1 "PROMOTION OF CELL SURVIVAL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087790 NANA "NANA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102335 AT3G25700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.35LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00040705
hypothetical protein (436 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 2e-70
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 7e-38
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-33
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 7e-28
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 4e-15
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 6e-15
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 3e-11
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 7e-11
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 4e-08
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 4e-07
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 1e-04
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 0.001
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 0.003
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  223 bits (570), Expect = 2e-70
 Identities = 107/363 (29%), Positives = 146/363 (40%), Gaps = 110/363 (30%)

Query: 85  VVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKP 144
           +V+L IGTPPQ   +++DTGS L+W +C                                
Sbjct: 3   LVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------- 30

Query: 145 RIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTF-SAAQSTLPLILGCAKDTSE 203
                           C Y Y Y DG+   G L  E FTF  ++ S   +  GC  D   
Sbjct: 31  ----------------CSYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEG 74

Query: 204 DK-----GILGMNLGRLSFASQAKIS--KFSYCVPTRVSRVGYTPTGSFYLGENP--NSA 254
                  GILG+  G LS  SQ   +  KFSYC+   V       +    LG+      +
Sbjct: 75  GSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCL---VPHDDTGGSSPLILGDAADLGGS 131

Query: 255 GFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSG 314
           G  Y   +  P        +P  Y V ++G+ + GKRL IP + F  D+ GSG TI+DSG
Sbjct: 132 GVVYTPLVKNP-------ANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSG 184

Query: 315 SEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFER 374
           +  TYL D AY            P                            D+   F+ 
Sbjct: 185 TTLTYLPDPAY------------P----------------------------DLTLHFDG 204

Query: 375 GVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAK 434
           G ++ +  E    DVG GV C+ I  S   G+  +I GN  QQN  VE+DL + R+GFA 
Sbjct: 205 GADLELPPENYFVDVGEGVVCLAILSSSSGGV--SILGNIQQQNFLVEYDLENSRLGFAP 262

Query: 435 AEC 437
           A+C
Sbjct: 263 ADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 441
PLN03146431 aspartyl protease family protein; Provisional 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.95
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.91
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.88
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.14
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.97
PF1365090 Asp_protease_2: Aspartyl protease 96.67
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.98
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.33
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 94.37
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 93.27
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 91.53
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 90.93
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 89.63
PF1365090 Asp_protease_2: Aspartyl protease 88.06
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 87.93
PF12384177 Peptidase_A2B: Ty3 transposon peptidase; InterPro: 87.8
COG3577215 Predicted aspartyl protease [General function pred 87.63
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 86.91
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 85.81
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 82.49
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 81.4
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 80.4
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6e-58  Score=459.50  Aligned_cols=333  Identities=26%  Similarity=0.508  Sum_probs=268.8

Q ss_pred             eEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCC--CCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCC
Q 042725           81 SMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAP--PTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQN  158 (441)
Q Consensus        81 ~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~--~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~  158 (441)
                      +.+|+++|.||||||++.|+|||||+++||+|.+|..|.  .++.|||++|+||+.++|.++.|.....    ...|..+
T Consensus        82 ~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~----~~~c~~~  157 (431)
T PLN03146         82 GGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSDE  157 (431)
T ss_pred             CccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC----CCCCCCC
Confidence            568999999999999999999999999999999997554  5789999999999999999999975432    2347666


Q ss_pred             CCcEEeEEeCCCceEEeeEEEEEEeeCCC----cccCCeEEEeeeCCC-----CcceeEeecCCCCCccccccc---Cce
Q 042725          159 RLCHYSYFYADGTFAEGNLVKEKFTFSAA----QSTLPLILGCAKDTS-----EDKGILGMNLGRLSFASQAKI---SKF  226 (441)
Q Consensus       159 ~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~----~~~~~~~fg~~~~~~-----~~~GIlGLg~~~~s~~~q~~~---~~F  226 (441)
                      +.|.|.+.|++|+.+.|.+++|+++|++.    ..++++.|||+....     ..+||||||+..++++.|+..   ++|
T Consensus       158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~F  237 (431)
T PLN03146        158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKF  237 (431)
T ss_pred             CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcE
Confidence            77999999999998889999999999973    257899999998753     478999999999999999753   589


Q ss_pred             eEecCCCCCCCCcCCccceeeCCCCCC--CCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCCCccccCCC
Q 042725          227 SYCVPTRVSRVGYTPTGSFYLGENPNS--AGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDAS  304 (441)
Q Consensus       227 s~~l~~~~~~~~~~~~g~l~lG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~~~~~~~~~  304 (441)
                      ++||.+.....  ...|.|.||+...-  ..+.|+|++...        .+.+|.|.|++|+||++.+.++...+.  ..
T Consensus       238 SycL~~~~~~~--~~~g~l~fG~~~~~~~~~~~~tPl~~~~--------~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~  305 (431)
T PLN03146        238 SYCLVPLSSDS--NGTSKINFGTNAIVSGSGVVSTPLVSKD--------PDTFYYLTLEAISVGSKKLPYTGSSKN--GV  305 (431)
T ss_pred             EEECCCCCCCC--CCcceEEeCCccccCCCCceEcccccCC--------CCCeEEEeEEEEEECCEECcCCccccc--cC
Confidence            99997542211  14799999985321  235566655321        135999999999999999887665543  13


Q ss_pred             CCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCceEEEEcCCc
Q 042725          305 GSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKER  384 (441)
Q Consensus       305 ~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~~~~i~~~~  384 (441)
                      +...+||||||++++||+++|+++.+++.+.++......  ......+|+.....   ..+|+|+|+| +|..+.|+|++
T Consensus       306 ~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~--~~~~~~~C~~~~~~---~~~P~i~~~F-~Ga~~~l~~~~  379 (431)
T PLN03146        306 EEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSD--PQGLLSLCYSSTSD---IKLPIITAHF-TGADVKLQPLN  379 (431)
T ss_pred             CCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCC--CCCCCCccccCCCC---CCCCeEEEEE-CCCeeecCcce
Confidence            345799999999999999999999999988876432211  12235689874321   2589999999 58999999999


Q ss_pred             EEEEeCCCeEEEEEEecCCCCCceeeechhhhcceEEEEECCCCEEEEecCCCCc
Q 042725          385 VLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECSR  439 (441)
Q Consensus       385 y~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~~c~~  439 (441)
                      |++...++..|+++....    +.||||+.|||++|+|||++++|||||+++|++
T Consensus       380 ~~~~~~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~  430 (431)
T PLN03146        380 TFVKVSEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK  430 (431)
T ss_pred             eEEEcCCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence            999877677899887542    359999999999999999999999999999986

>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
1j71_A334 Structure Of The Extracellular Aspartic Proteinase 8e-07
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 3e-04
3vla_A413 Crystal Structure Of Edgp Length = 413 3e-04
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From Candida Tropicalis Yeast Length = 334 Back     alignment and structure 
Iteration: 1

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 139/361 (38%), Gaps = 56/361 (15%)
Query: 88  LPIGTPPQTQEMVLDTGSQLSWI-----KCHKKAPAXXXXXXXXXXXXXXXVLPCTHPLC 142
           + +G+  Q Q +V+DTGS   W+     +C                         T+  C
Sbjct: 18  IVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQ------------------TNNFC 59
Query: 143 KPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS 202
           K         +   QN    +S  Y D T ++G+  K+   F    S           TS
Sbjct: 60  KQEGTFDPSSSSSAQNLNQDFSIEYGDLTSSQGSFYKDTVGFGGI-SIKNQQFADVTTTS 118
Query: 203 EDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFL 262
            D+GI+G+       A +A  + +   VP  + + G     ++ L  N   A    + F 
Sbjct: 119 VDQGIMGIGFT----ADEAGYNLYD-NVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFG 173
Query: 263 TFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVD 322
               ++ +  L  L  +  ++ +R+    ++   T+   +A      ++DSG+  TY   
Sbjct: 174 GVDNAKYTGTLTALPVTSSVE-LRVHLGSINFDGTSVSTNA----DVVLDSGTTITYFS- 227
Query: 323 VAYNKIKEEIVRLAGPRMK-KGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIE 381
                  ++  R+ G     +  +Y            +    L GD VF F++GV+I + 
Sbjct: 228 ---QSTADKFARIVGATWDSRNEIY-----------RLPSCDLSGDAVFNFDQGVKITVP 273
Query: 382 -KERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECSRS 440
             E +L D    +   GI R++     +NI G+   +  ++ +DL  + +  A+ + + S
Sbjct: 274 LSELILKDSDSSICYFGISRND-----ANILGDNFLRRAYIVYDLDDKTISLAQVKYTSS 328
Query: 441 A 441
           +
Sbjct: 329 S 329
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 2e-71
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 3e-70
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 1e-60
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 2e-21
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 5e-21
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 6e-20
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 6e-19
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 3e-16
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 5e-15
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 6e-14
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 5e-11
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 1e-10
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-10
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 1e-10
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 4e-10
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 4e-10
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 6e-10
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 1e-09
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 2e-09
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 2e-09
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 2e-09
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 3e-09
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 4e-09
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 3e-08
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 3e-08
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 6e-08
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 1e-07
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 5e-07
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 7e-07
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 1e-06
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 8e-06
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 8e-06
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 3e-05
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
 Score =  230 bits (587), Expect = 2e-71
 Identities = 70/390 (17%), Positives = 134/390 (34%), Gaps = 41/390 (10%)

Query: 85  VVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAP--PTTSFDPSRSSSFSVLPCTHPLC 142
           V ++   TP  ++ +V+D G +  W+ C +   +          S+ S    + C     
Sbjct: 23  VTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFN 82

Query: 143 KPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLP--------LI 194
            PR         C+ N    +       T   G + ++  +  +   +           I
Sbjct: 83  GPR-------PGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFI 135

Query: 195 LGCAKDTSEDK------GILGMNLGRLSFASQAKIS-----KFSYCVPTRVSRVGYTPTG 243
             CA  +          G+ G+   R++  SQ   +     KF+ C+    S       G
Sbjct: 136 FSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFG 195

Query: 244 S----FYLGENPNSAGFRYVSFLTFPQSQ---RSPNLDPLAYSVPMQGVRIQGKRLDIPA 296
           +    F      +     Y   LT P S     +     + Y + ++ ++I  K + +  
Sbjct: 196 NDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNT 255

Query: 297 TAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDG 356
           +     ++G G T + + + +T L    Y  + E  ++ +  R             CF  
Sbjct: 256 SLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFST 315

Query: 357 NAMEVGRLIG-----DMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIF 411
           + +   RL       D+V + E  V   I     +  +   V C+G+         S + 
Sbjct: 316 DNILSTRLGPSVPSIDLVLQSE-SVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVI 374

Query: 412 GNFHQQNLWVEFDLASRRVGFAKAECSRSA 441
           G    ++  V+FDLA+ RVGF+        
Sbjct: 375 GGHQLEDNLVQFDLATSRVGFSGTLLGSRT 404
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.89
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.79
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 95.21
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 94.09
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 93.72
2hs1_A99 HIV-1 protease; ultra-high resolution active site 83.68
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 83.54
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.6e-60  Score=467.71  Aligned_cols=340  Identities=20%  Similarity=0.268  Sum_probs=247.7

Q ss_pred             EeecccccccCCCCCCcC-Ccccccccc----ccccCCCCCcccccccceeEEEEEEEeeCCCCceEEEEEECCCCceeE
Q 042725           36 FALISRRFSHDDLSPSYY-SSFVSQTKQ----NRKVARAPSLRYRSKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWI  110 (441)
Q Consensus        36 ~pl~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV  110 (441)
                      +||++++..|+.+.+... ....+ +++    .............+.++.+.+|+++|+||||||+|.|+|||||++|||
T Consensus        11 i~l~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV   89 (383)
T 2x0b_A           11 IFLKRMPSIRESLKERGVDMARLG-PEWSQPMKRLTLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV   89 (383)
T ss_dssp             -----------------------------------------CEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEE
T ss_pred             EEEEECCcHHHHHHHhCchHHHHH-HhhccccccccccCCcceEeeeecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEE
Confidence            999998877776553221 11111 111    000000112224555566789999999999999999999999999999


Q ss_pred             eCCCCC----CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCcEEeEEeCCCceEEeeEEEEEEeeCC
Q 042725          111 KCHKKA----PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSA  186 (441)
Q Consensus       111 ~c~~~~----~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~~~~~Yg~g~~~~G~~~~D~v~~g~  186 (441)
                      +|..|.    .|..|+.||+++|+||+..+                        |.|.+.|++|+ +.|.++.|+|+|++
T Consensus        90 ~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~------------------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~  144 (383)
T 2x0b_A           90 PSSKCSRLYTACVYHKLFDASDSSSYKHNG------------------------TELTLRYSTGT-VSGFLSQDIITVGG  144 (383)
T ss_dssp             EBTTSCTTSHHHHTSCCBCGGGCTTCEEEE------------------------EEEEEECSSCE-EEEEEEEEEEEETT
T ss_pred             eccCCCCCcccccCCCCCCCCCCCcEEECC------------------------cEEEEEcCCcc-EEEEEEeeEEEEcC
Confidence            999995    68889999999999999865                        48999999998 57999999999998


Q ss_pred             CcccCCeEEEeeeCCC-------CcceeEeecCCCCCc----------cccc--ccCceeEecCCCCCCCCcCCccceee
Q 042725          187 AQSTLPLILGCAKDTS-------EDKGILGMNLGRLSF----------ASQA--KISKFSYCVPTRVSRVGYTPTGSFYL  247 (441)
Q Consensus       187 ~~~~~~~~fg~~~~~~-------~~~GIlGLg~~~~s~----------~~q~--~~~~Fs~~l~~~~~~~~~~~~g~l~l  247 (441)
                       ..++ +.|||+....       .+|||||||++.++.          .+|.  ..+.|++||.+..... ....|.|+|
T Consensus       145 -~~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~-~~~~G~l~f  221 (383)
T 2x0b_A          145 -ITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENS-QSLGGQIVL  221 (383)
T ss_dssp             -EEEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC-----CCEEEEE
T ss_pred             -ceEE-EEEEEEEecCCcccccCCCceEeccCCCccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcc-cCCCcEEEE
Confidence             5788 9999998752       689999999988763          2342  2489999998753211 113899999


Q ss_pred             CCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCCCccccCCCCCCcEEEccccccccccHHHHHH
Q 042725          248 GENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNK  327 (441)
Q Consensus       248 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~  327 (441)
                      |++|++   +|.+.+.+.+..     .+.||+|.|++|.|+++.+.         +..++.+||||||+++++|.+++++
T Consensus       222 Gg~d~~---~y~G~l~~~pv~-----~~~~w~v~l~~i~v~~~~~~---------~~~~~~aiiDTGTs~~~lP~~~~~~  284 (383)
T 2x0b_A          222 GGSDPQ---HYEGNFHYINLI-----KTGVWQIQMKGVSVGSSTLL---------CEDGCLALVDTGASYISGSTSSIEK  284 (383)
T ss_dssp             SSCCGG---GEEEEEEEEEBS-----STTSCEEEECEEEESSCCCB---------STTCEEEEECTTCSSEEECHHHHHH
T ss_pred             CCcChH---HcCCceEEEEcC-----CCceEEEEEeEEEeCCceEE---------cCCCcEEEEcCCCceEEcCHHHHHH
Confidence            999986   567777665443     24699999999999987642         2457789999999999999999999


Q ss_pred             HHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCceEEEEcCCcEEEEeCC--CeEEE-EEEecCCC
Q 042725          328 IKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGG--GVHCV-GIGRSEML  404 (441)
Q Consensus       328 l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~~~~i~~~~y~~~~~~--~~~C~-~i~~~~~~  404 (441)
                      |.+++.    +..    ..+.+.++|+...      .+|+|+|+| +|.+|.|+|++|+++...  +..|+ +|...+..
T Consensus       285 i~~~i~----a~~----~~g~~~v~C~~~~------~~P~i~f~~-~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~  349 (383)
T 2x0b_A          285 LMEALG----AKK----RLFDYVVKCNEGP------TLPDISFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIP  349 (383)
T ss_dssp             HHHHHT----CEE----CSSCEEEEGGGTT------TCCCEEEEE-TTEEEEECHHHHBCCCCCCTTSEEEBSEEECCCC
T ss_pred             HHHHhC----Ccc----cCCcEEEeccccc------cCceEEEEE-CCEEEEECHHHhEeeccCCCCCeEEEEEEecccC
Confidence            886663    322    1345678998765      689999999 799999999999987642  45897 68765421


Q ss_pred             --CCceeeechhhhcceEEEEECCCCEEEEecCC
Q 042725          405 --GLASNIFGNFHQQNLWVEFDLASRRVGFAKAE  436 (441)
Q Consensus       405 --~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~~  436 (441)
                        ..+.||||++|||++|+|||++|+|||||+++
T Consensus       350 ~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~  383 (383)
T 2x0b_A          350 PPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  383 (383)
T ss_dssp             TTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence              24689999999999999999999999999974
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 441
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 9e-40
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 6e-28
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 5e-27
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 3e-26
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 9e-25
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 3e-24
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 1e-23
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 9e-23
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 1e-22
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 2e-22
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 6e-22
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-21
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 1e-20
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-20
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 2e-20
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-20
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 3e-20
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 9e-20
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 3e-19
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 3e-17
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 4e-17
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 1e-15
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  144 bits (364), Expect = 9e-40
 Identities = 55/380 (14%), Positives = 116/380 (30%), Gaps = 53/380 (13%)

Query: 85  VVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDP--SRSSSFSVLPCTHPLC 142
            +    G       +VLD    L W  C    P        P    ++++    C  P C
Sbjct: 17  TIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSC 71

Query: 143 KPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLP---LILGCAK 199
                     +D        Y Y    G  A G+L   +F  +    + P   + +G   
Sbjct: 72  G---------SDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLA 122

Query: 200 DTSEDK----------GILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGE 249
             +  K          G+ G+    L+  +Q   ++            G      F  G 
Sbjct: 123 ACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGP 182

Query: 250 NPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQT 309
            P     + + +        SP      + +  + + +   R+ +P  A       +G  
Sbjct: 183 VPWPQFTQSMPYTPLVTKGGSPA-----HYISARSIVVGDTRVPVPEGAL-----ATGGV 232

Query: 310 IVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVA------DMCFDGNAMEVGR 363
           ++ +   +  L    Y  + +   +    +   G              +C+D   +    
Sbjct: 233 MLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNL 292

Query: 364 L---IGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLAS-----NIFGNFH 415
               + ++    + G +  +  +  + DV  G  CV     + +          I G   
Sbjct: 293 GGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQ 352

Query: 416 QQNLWVEFDLASRRVGFAKA 435
            ++  ++FD+  +R+GF++ 
Sbjct: 353 MEDFVLDFDMEKKRLGFSRL 372
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 80.35
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure