Citrus Sinensis ID: 042730

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MGFRLLKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEHHcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHccc
Coil and Loop (DISEMBL)
MGFRLLKIVsnkntekcsqativpkgHFVVYVGEttkkrfvlpisylkhpsfqnlLSQTeeefgfdhpmggltipcsEEVFMDLISSL
Flexible Loop (DISEMBL)
MGFRLLKivsnkntekcsqativpkgHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL
Low Complexity Region (SEG)
MGFRLLKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL
Disordered region (IsUnstruct)
****LLKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDL****
Disordered Region (DISOPRED)
*G************************HFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL
Disordered Region (DISEMBL)
MGFRLLKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL
Disordered Region (DISPRO)
********VSNKNTE***QATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFRLLKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
P33081	82	Auxin-induced protein 15A	no	no	0.920	0.987	0.625	7e-24
P33082	82	Auxin-induced protein X15	no	no	0.920	0.987	0.602	4e-23
P33079	93	Auxin-induced protein 10A	no	no	0.988	0.935	0.549	1e-22
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.977	0.934	0.582	3e-22
P33080	92	Auxin-induced protein X10	no	no	0.988	0.945	0.544	4e-22
P33083	90	Auxin-induced protein 6B	no	no	0.988	0.966	0.566	2e-21

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 63/88 (71%), Gaps = 7/88 (7%)

Query: 1  MGFRLLKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTE 60
          MGFRL  I       K S+A   PKG+  VYVGE  K RFV+P+SYL  PSFQ+LLSQ E
Sbjct: 1  MGFRLPGI------RKASKAADAPKGYLAVYVGEKLK-RFVIPVSYLNQPSFQDLLSQAE 53

Query: 61 EEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          EEFG+DHPMGGLTIPCSE+VF  + S L
Sbjct: 54 EEFGYDHPMGGLTIPCSEDVFQCITSCL 81

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 61/88 (69%), Gaps = 7/88 (7%)

Query: 1  MGFRLLKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTE 60
          MGFRL  I       K S A   PKG+  VYVGE  K RFV+P+SY+  PSFQ+LL+Q E
Sbjct: 1  MGFRLPGI------RKASNAVDAPKGYLAVYVGEKMK-RFVIPVSYMNQPSFQDLLTQAE 53

Query: 61 EEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          EEFG+DHPMGGLTIPCSEEVF  +   L
Sbjct: 54 EEFGYDHPMGGLTIPCSEEVFQRITCCL 81

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 64/91 (70%), Gaps = 4/91 (4%)

Query: 1  MGFRLLKIVSNKN---TEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLS 57
          MGFR+  IV   +   T+  S+   VPKG+  VYVG+  + RF +P+SYL  PSFQ LLS
Sbjct: 1  MGFRIAGIVRRTSFYTTQAASKRVDVPKGYAAVYVGDKMR-RFTIPVSYLNEPSFQELLS 59

Query: 58 QTEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          Q EEEFG+DHPMGGLTIPC EE F+++ + L
Sbjct: 60 QAEEEFGYDHPMGGLTIPCKEEEFLNVTAHL 90

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 65/91 (71%), Gaps = 5/91 (5%)

Query: 1  MGFRL---LKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLS 57
          MGFRL    K +S +N E  S+    PKG+  VYVGE  K RFV+P+S+L  P FQ+LLS
Sbjct: 1  MGFRLPGIRKTLSARN-EASSKVLDAPKGYLAVYVGENMK-RFVIPVSHLNQPLFQDLLS 58

Query: 58 QTEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          Q EEEFG+DHPMGGLTIPCSE++F  + S L
Sbjct: 59 QAEEEFGYDHPMGGLTIPCSEDLFQHITSCL 89

Vigna radiata var. radiata (taxid: 3916)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 66/90 (73%), Gaps = 3/90 (3%)

Query: 1  MGFRL--LKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQ 58
          MGFRL  ++  S    +  S++  VPKG+ VVYVG+  + RF++P+SYL  PSFQ+LL+Q
Sbjct: 1  MGFRLPGIRKTSIAANQASSKSVEVPKGYLVVYVGDKMR-RFLIPVSYLNQPSFQDLLNQ 59

Query: 59 TEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
           EEEFG+DHPMGGLTIPC E+ F+ + S L
Sbjct: 60 AEEEFGYDHPMGGLTIPCKEDEFLTVTSHL 89

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 63/90 (70%), Gaps = 3/90 (3%)

Query: 1  MGFRL--LKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQ 58
          MGFRL  ++  S    +  S+A  V KG+  VYVGE  + RFV+P+SYL  PSFQ+LLSQ
Sbjct: 1  MGFRLPGIRKASFSANQASSKAVDVEKGYLAVYVGEKMR-RFVIPVSYLNKPSFQDLLSQ 59

Query: 59 TEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
           EEEFG+ HP GGLTIPCSE+VF  + S L
Sbjct: 60 AEEEFGYHHPNGGLTIPCSEDVFQHITSFL 89


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,132,176
Number of Sequences: 539616
Number of extensions: 1184214
Number of successful extensions: 2110
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2097
Number of HSP's gapped (non-prelim): 7
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
225427860	95	PREDICTED: auxin-induced protein 15A-lik	1.0	0.926	0.684	2e-28
225427856	95	PREDICTED: auxin-induced protein 15A [Vi	1.0	0.926	0.684	7e-28
225427850	95	PREDICTED: auxin-induced protein X15 [Vi	1.0	0.926	0.684	8e-28
359474894	95	PREDICTED: auxin-induced protein 10A5-li	1.0	0.926	0.663	3e-27
225427862	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.926	0.652	9e-27
359474902	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.926	0.652	1e-26
225427864	88	PREDICTED: auxin-induced protein 15A [Vi	0.965	0.965	0.659	1e-26
359474898	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.926	0.652	2e-26
225427852	95	PREDICTED: auxin-induced protein 10A5 [V	1.0	0.926	0.652	2e-26
147804681	223	hypothetical protein VITISV_016870 [Viti	0.75	0.295	0.8	2e-26

>gi|225427860|ref|XP_002276347.1| PREDICTED: auxin-induced protein 15A-like [Vitis vinifera]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 72/92 (78%), Gaps = 4/92 (4%)

Query: 1  MGFRLLKIVSNKN----TEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLL 56
          MGFRL  IV+ K       K ++A  VPKG+F VYVGE  KKRFV+P+SYLK+PSFQNLL
Sbjct: 1  MGFRLPGIVNAKQILQQVRKGAEAKNVPKGYFSVYVGEVQKKRFVVPLSYLKNPSFQNLL 60

Query: 57 SQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          SQ EEEFGFDHPMGGLTIPC+EE F+DL SS 
Sbjct: 61 SQAEEEFGFDHPMGGLTIPCTEEAFIDLTSSW 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427856|ref|XP_002276271.1| PREDICTED: auxin-induced protein 15A [Vitis vinifera] gi|297744693|emb|CBI37955.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 71/92 (77%), Gaps = 4/92 (4%)

Query: 1  MGFRLLKIVSNKNTE----KCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLL 56
          MGFRL  IV+ K       K ++A  VPKG+F VYVGE  KKRFV+PISYLK+PSFQNLL
Sbjct: 1  MGFRLPGIVNAKQVVQQVCKGAEAKNVPKGYFAVYVGEVQKKRFVVPISYLKNPSFQNLL 60

Query: 57 SQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          SQ EEEFG DHPMGGLTIPC+EE F+DL SS 
Sbjct: 61 SQAEEEFGLDHPMGGLTIPCTEEAFIDLTSSW 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427850|ref|XP_002276204.1| PREDICTED: auxin-induced protein X15 [Vitis vinifera]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 72/92 (78%), Gaps = 4/92 (4%)

Query: 1  MGFRLLKIVSNKNT----EKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLL 56
          MGFRL  IV+ K T     K ++A  VPKG+F VYVGE  KKRFV+PISYLK+P FQNLL
Sbjct: 1  MGFRLPGIVNAKKTLQQERKGAEAKNVPKGYFAVYVGEVQKKRFVVPISYLKNPLFQNLL 60

Query: 57 SQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          SQ EEEFGFDHPMGGLTIPC+EE F++L  SL
Sbjct: 61 SQAEEEFGFDHPMGGLTIPCTEEAFINLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474894|ref|XP_003631551.1| PREDICTED: auxin-induced protein 10A5-like [Vitis vinifera]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 68/92 (73%), Gaps = 4/92 (4%)

Query: 1  MGFRLLKIVSNKNTEKCS----QATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLL 56
          M  R  +I+  K   +C     + T VPKGHF VYVGET KKRFV+PISYLKHPSFQ LL
Sbjct: 1  MAIRFQRIIRAKQFPRCILPSLETTDVPKGHFPVYVGETQKKRFVIPISYLKHPSFQKLL 60

Query: 57 SQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          SQ EEEFGFDHP GGLTIPC EEVF++L  SL
Sbjct: 61 SQAEEEFGFDHPQGGLTIPCREEVFINLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427862|ref|XP_002272231.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|359474896|ref|XP_003631552.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|147804680|emb|CAN62608.1| hypothetical protein VITISV_016869 [Vitis vinifera]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 68/92 (73%), Gaps = 4/92 (4%)

Query: 1  MGFRLLKIVSNKNTEK----CSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLL 56
          M  R  +I+  K   +      ++T VPKGH  VYVGET KKRFV+PISYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 57 SQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          SQ EEEFGFDHP+GGLTIPC EE F+DL  SL
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474902|ref|XP_002276058.2| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|147776039|emb|CAN65270.1| hypothetical protein VITISV_040137 [Vitis vinifera]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 68/92 (73%), Gaps = 4/92 (4%)

Query: 1  MGFRLLKIVSNKNTEK----CSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLL 56
          M  R  +I+  K   +      ++T VPKGH  VYVGET KKRFV+PISYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGETEKKRFVIPISYLKHPSFQNLL 60

Query: 57 SQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          SQ EEEFGFDHP+GGLTIPC EE F+DL  SL
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427864|ref|XP_002276369.1| PREDICTED: auxin-induced protein 15A [Vitis vinifera]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 70/88 (79%), Gaps = 3/88 (3%)

Query: 1  MGFRLLKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTE 60
          MGFRL  + + K   + ++A  VPKG+  VYVGE  KKRFV+PISYL++PSFQ LLSQ E
Sbjct: 1  MGFRLPGMFAAK---QGAEAKNVPKGYLAVYVGEAQKKRFVVPISYLRNPSFQQLLSQAE 57

Query: 61 EEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          EEFGFDHPMGGLTIPC+EE F+D+ SSL
Sbjct: 58 EEFGFDHPMGGLTIPCTEEAFIDITSSL 85

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474898|ref|XP_003631553.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 68/92 (73%), Gaps = 4/92 (4%)

Query: 1  MGFRLLKIVSNKNTEK----CSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLL 56
          M  R  +I+  K   +      ++T VPKGH  VYVGET KKRFV+PISYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSLESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 57 SQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          SQ EEEFGFDHP+GGLTIPC EE F+DL  SL
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427852|ref|XP_002276227.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 68/92 (73%), Gaps = 4/92 (4%)

Query: 1  MGFRLLKIVSNKNTEK----CSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLL 56
          M  R  +I+  K   +      ++T VPKGH  VYVGET KKRFV+PISYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSLESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 57 SQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88
          SQ EEEFGFDHP+GGLTIPC EE F+DL  SL
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTYSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804681|emb|CAN62609.1| hypothetical protein VITISV_016870 [Vitis vinifera]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 61/70 (87%)

Query: 19  QATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSE 78
           ++T VPKGH  VYVGET KKRFV+PISYLKHPSFQNLLSQ EEEFGFDHP+GGLTIPC E
Sbjct: 151 ESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLLSQAEEEFGFDHPLGGLTIPCRE 210

Query: 79  EVFMDLISSL 88
           E F+DL  SL
Sbjct: 211 EAFIDLTCSL 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.965	0.904	0.606	9.7e-25
TAIR|locus:2116895	105	AT4G34810 "AT4G34810" [Arabido	0.954	0.8	0.606	5.3e-24
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.909	0.808	0.614	4.8e-23
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	0.875	0.785	0.602	2.1e-22
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.806	0.806	0.633	3e-21
TAIR|locus:2116860	104	AT4G34770 [Arabidopsis thalian	0.75	0.634	0.716	3e-21
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.863	0.835	0.6	3.9e-21
TAIR|locus:2161518	90	SAUR23 "AT5G18060" [Arabidopsi	0.920	0.9	0.560	1e-20
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.886	0.866	0.597	1e-20
TAIR|locus:2161573	90	SAUR22 "AT5G18050" [Arabidopsi	0.886	0.866	0.585	1.3e-20

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 54/89 (60%), Positives = 70/89 (78%)

Query:     1 MGFRLLKIVSNKNTEKCSQATIVPKGHFVVYVGET--TKKRFVLPISYLKHPSFQNLLSQ 58
             M  RL +++++K ++K  Q + VPKGH  VYVGE   +KKRFV+PISYL HPSFQ LLS+
Sbjct:     1 MAIRLSRVINSKQSQK--QQSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSR 58

Query:    59 TEEEFGFDHPMGGLTIPCSEEVFMDLISS 87
              EEEFGF+HP+GGLTIPC EE F+ L++S
Sbjct:    59 AEEEFGFNHPIGGLTIPCREETFVGLLNS 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 54/89 (60%), Positives = 68/89 (76%)

Query:     4 RLLKI--VSNKNTEKCSQATIVPKGHFVVYVGETT---KKRFVLPISYLKHPSFQNLLSQ 58
             ++LK+  ++N+N    S +  VPKGH  VYVGE     KKRFV+PIS+L HPSF+  LS+
Sbjct:    14 QILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSR 73

Query:    59 TEEEFGFDHPMGGLTIPCSEEVFMDLISS 87
              EEEFGF+HPMGGLTIPC EEVF+DLI+S
Sbjct:    74 AEEEFGFNHPMGGLTIPCREEVFLDLIAS 102

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 51/83 (61%), Positives = 64/83 (77%)

Query:     4 RLLKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEF 63
             R  K++S+ ++   S +  VPKG+  VYVGE   KRFV+P+SYL  PSFQ+LL + EEEF
Sbjct:    17 RQAKLLSSSSS---SSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQPSFQDLLRKAEEEF 73

Query:    64 GFDHPMGGLTIPCSEEVFMDLIS 86
             GFDHPMGGLTIPCSEE+F+DL S
Sbjct:    74 GFDHPMGGLTIPCSEEIFIDLAS 96

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 47/78 (60%), Positives = 58/78 (74%)

Query:    12 KNTEKCSQATIVPKGHFVVYVGETT-KKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMG 70
             K+    S    +PKGH  VYVGE   K+RFV+P++YL HP FQ LL + EEEFGFDHPMG
Sbjct:    17 KSLSHSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQKLLRKAEEEFGFDHPMG 76

Query:    71 GLTIPCSEEVFMDLISSL 88
             GLTIPC+E++F+DL S L
Sbjct:    77 GLTIPCTEQIFIDLASRL 94

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 45/71 (63%), Positives = 57/71 (80%)

Query:    18 SQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCS 77
             S A+  PKG   VYVGE+ KKR+++P+SYL  PSFQ LLS++EEEFGFDHPMGGLTIPC 
Sbjct:    17 STASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTIPCP 76

Query:    78 EEVFMDLISSL 88
             E+ F+++ S L
Sbjct:    77 EDTFINVTSRL 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116860 AT4G34770 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/67 (71%), Positives = 53/67 (79%)

Query:    23 VPKGHFVVYVGETT-KKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVF 81
             VPKGH  VYVGET  +KRFV+PISYL HP FQ LL+  EEEFGFDHPMGGLTIPC+E+ F
Sbjct:    35 VPKGHVAVYVGETYHRKRFVIPISYLNHPLFQGLLNLAEEEFGFDHPMGGLTIPCTEDYF 94

Query:    82 MDLISSL 88
               L S L
Sbjct:    95 TALASIL 101

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 48/80 (60%), Positives = 60/80 (75%)

Query:     7 KIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFD 66
             KI+S   T     A+  PKG   VYVGE+ KKR+++PISYL  PSFQ LLS++EEEFGFD
Sbjct:    12 KILSRSTTA----ASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFD 67

Query:    67 HPMGGLTIPCSEEVFMDLIS 86
             HPMGGLTIPC E+ F+++ S
Sbjct:    68 HPMGGLTIPCPEDTFINVTS 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161518 SAUR23 "AT5G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 46/82 (56%), Positives = 61/82 (74%)

Query:     8 IVSNKNTEKCSQATIVP-KGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFD 66
             +V+ K   + + A   P KG   VYVGE+ KKR+++P+SYL  PSFQ LLS++EEEFGFD
Sbjct:     8 LVAKKILSRSAAAVSAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFD 67

Query:    67 HPMGGLTIPCSEEVFMDLISSL 88
             HPMGGLTIPC E+ F+++ S L
Sbjct:    68 HPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 49/82 (59%), Positives = 63/82 (76%)

Query:     7 KIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFD 66
             KI+S ++T   S A   PKG   VYVGE+ KKR+++P+SYL  PSFQ LLS++EEEFGFD
Sbjct:    12 KILS-RSTGAGSAA---PKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFD 67

Query:    67 HPMGGLTIPCSEEVFMDLISSL 88
             HPMGGLTIPC E+ F+++ S L
Sbjct:    68 HPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 48/82 (58%), Positives = 63/82 (76%)

Query:     7 KIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFD 66
             KI+S ++T   S A   PKG   VYVGE+ KKR+++P+SYL  PSFQ LLS++E+EFGFD
Sbjct:    12 KILS-RSTAAVSAA---PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFD 67

Query:    67 HPMGGLTIPCSEEVFMDLISSL 88
             HPMGGLTIPC E+ F+++ S L
Sbjct:    68 HPMGGLTIPCHEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32295	ARG7_VIGRR	No assigned EC number	0.5824	0.9772	0.9347	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036003001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (95 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	88
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	6e-38
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	6e-33
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	7e-30
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-24

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  122 bits (307), Expect = 6e-38
 Identities = 44/79 (55%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 10 SNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPM 69
           ++ +   S +  VPKGHF VYVGE   +RFV+PISYL HP FQ LL + EEEFGFD   
Sbjct: 22 RSRGSSSKSSSADVPKGHFAVYVGEE-TRRFVVPISYLNHPLFQELLDRAEEEFGFDQ-D 79

Query: 70 GGLTIPCSEEVFMDLISSL 88
          GGLTIPC   VF  L+  L
Sbjct: 80 GGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score =  109 bits (273), Expect = 6e-33
 Identities = 53/85 (62%), Positives = 64/85 (75%), Gaps = 3/85 (3%)

Query: 6   LKIVSNKNTEKCSQATIVPKGHFVVYVGETT---KKRFVLPISYLKHPSFQNLLSQTEEE 62
           L  ++N+N    S +  VPKGH  VYVGE     KKRFV+PIS+L HPSF+  LS+ EEE
Sbjct: 18  LNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEE 77

Query: 63  FGFDHPMGGLTIPCSEEVFMDLISS 87
           FGF+HPMGGLTIPC EEVF+DLI+S
Sbjct: 78  FGFNHPMGGLTIPCREEVFLDLIAS 102

Length = 105

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score =  101 bits (254), Expect = 7e-30
 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 2/66 (3%)

Query: 23  VPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFM 82
           VPKGHF VYVGE  + R+++PIS+L HP FQ+LL Q EEEFGFDH M GLTIPC E VF 
Sbjct: 40  VPKGHFPVYVGEN-RSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDM-GLTIPCEEVVFR 97

Query: 83  DLISSL 88
            L S +
Sbjct: 98  SLTSMI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 88.3 bits (218), Expect = 1e-24
 Identities = 45/79 (56%), Positives = 56/79 (70%), Gaps = 1/79 (1%)

Query: 10  SNKNTEKCSQATIVPKGHFVVYVGETT-KKRFVLPISYLKHPSFQNLLSQTEEEFGFDHP 68
           S+  +   + + +VPKGH  VYVGE   KKRFV+PISYL HP F+  L++ EEE GF H 
Sbjct: 26  SSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHS 85

Query: 69  MGGLTIPCSEEVFMDLISS 87
           MGGLTIPC EE F+ LI+S
Sbjct: 86  MGGLTIPCREESFLHLITS 104

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	83.73
PRK02899	197	adaptor protein; Provisional	80.3

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=4.3e-39  Score=218.55  Aligned_cols=87  Identities=63%  Similarity=1.085  Sum_probs=78.3

Q ss_pred             Ccccchhhhhc-ccccc-c----------cccccCCCceEEEEEcCC---cceEEEEeccccCchHHHHHHhhhhhhcCC
Q 042730            1 MGFRLLKIVSN-KNTEK-C----------SQATIVPKGHFVVYVGET---TKKRFVLPISYLKHPSFQNLLSQTEEEFGF   65 (88)
Q Consensus         1 m~~~~~~~~~~-~~~~~-~----------~~~~~vpkG~~~VyVG~e---~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~   65 (88)
                      ||+++..|.++ ||+++ +          +.+.+|||||||||||++   +.+||+||++|||||.|++||++|||||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf   80 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF   80 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence            89999999986 99997 2          355689999999999982   249999999999999999999999999999


Q ss_pred             ccCCCceEeeCCHHHHHHHHhc
Q 042730           66 DHPMGGLTIPCSEEVFMDLISS   87 (88)
Q Consensus        66 ~~~~G~L~IPC~~~~F~~vl~~   87 (88)
                      +|++|+|+||||++.|++++++
T Consensus        81 ~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         81 NHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCEEeeCCHHHHHHHHHh
Confidence            9866999999999999999874

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=4.2e-38  Score=214.57  Aligned_cols=87  Identities=55%  Similarity=0.960  Sum_probs=78.0

Q ss_pred             Ccccchhhhhccccccc----------------cccccCCCceEEEEEcCC-cceEEEEeccccCchHHHHHHhhhhhhc
Q 042730            1 MGFRLLKIVSNKNTEKC----------------SQATIVPKGHFVVYVGET-TKKRFVLPISYLKHPSFQNLLSQTEEEF   63 (88)
Q Consensus         1 m~~~~~~~~~~~~~~~~----------------~~~~~vpkG~~~VyVG~e-~~~RfvVp~~~L~hP~F~~LL~~aeeEf   63 (88)
                      ||...+.+.+||||+++                +.+.+|||||+|||||++ +++||+||++|||||.|++||++|||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf   80 (108)
T PLN03219          1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC   80 (108)
T ss_pred             CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence            88889988999999971                234679999999999983 3599999999999999999999999999


Q ss_pred             CCccCCCceEeeCCHHHHHHHHhc
Q 042730           64 GFDHPMGGLTIPCSEEVFMDLISS   87 (88)
Q Consensus        64 G~~~~~G~L~IPC~~~~F~~vl~~   87 (88)
                      ||++++|+|+|||+++.|++++++
T Consensus        81 Gf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         81 GFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCEEEeCCHHHHHHHHHh
Confidence            999866999999999999999974

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.2e-37  Score=211.27  Aligned_cols=80  Identities=55%  Similarity=0.893  Sum_probs=72.6

Q ss_pred             hhhhcccccc-------c------cccccCCCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceE
Q 042730            7 KIVSNKNTEK-------C------SQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLT   73 (88)
Q Consensus         7 ~~~~~~~~~~-------~------~~~~~vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~   73 (88)
                      .++++||+++       .      ..+.+|||||||||||+++ +||+||++|||||.|++||++|||||||+|+ |+|+
T Consensus        11 ~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~-~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~-G~L~   88 (104)
T PLN03090         11 QTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENR-SRYIVPISFLTHPEFQSLLQQAEEEFGFDHD-MGLT   88 (104)
T ss_pred             HHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCC-EEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC-CcEE
Confidence            3678899997       1      1356899999999999976 9999999999999999999999999999997 9999


Q ss_pred             eeCCHHHHHHHHhcC
Q 042730           74 IPCSEEVFMDLISSL   88 (88)
Q Consensus        74 IPC~~~~F~~vl~~l   88 (88)
                      ||||++.|++++|+|
T Consensus        89 IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         89 IPCEEVVFRSLTSMI  103 (104)
T ss_pred             EeCCHHHHHHHHHHh
Confidence            999999999999986

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=4.4e-36  Score=201.21  Aligned_cols=67  Identities=61%  Similarity=1.070  Sum_probs=64.1

Q ss_pred             cccCCCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceEeeCCHHHHHHHHhcC
Q 042730           20 ATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL   88 (88)
Q Consensus        20 ~~~vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~l   88 (88)
                      ..++|+||||||||+++ +||+||++|||||.|++||++|||||||+++ |+|+|||+++.|++++|+|
T Consensus        33 ~~~vp~G~~~VyVG~~~-~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~-G~l~iPC~~~~Fe~~l~~l   99 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGEER-RRFVVPVSYLNHPLFQELLEQAEEEFGFDQD-GPLTIPCDVVLFEHLLWLL   99 (100)
T ss_pred             cCCCCCCeEEEEeCccc-eEEEechHHcCchhHHHHHHHHhhhcCcCCC-CcEEeeCCHHHHHHHHHHh
Confidence            47899999999999976 9999999999999999999999999999996 9999999999999999986

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=83.73  E-value=1.1  Score=28.07  Aligned_cols=55  Identities=24%  Similarity=0.281  Sum_probs=39.3

Q ss_pred             EEEEcCCcceEEEEeccccC-ch--HHHHHHhhhhhhcCCccCCCceEeeCCHHHHHHHHhc
Q 042730           29 VVYVGETTKKRFVLPISYLK-HP--SFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISS   87 (88)
Q Consensus        29 ~VyVG~e~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~   87 (88)
                      .+=||.   ++|.++.+.|. +|  .|..++....... +..++|.+-|-++...|++|+..
T Consensus         2 ~lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~-~~~~~~~~fiDRdp~~F~~IL~y   59 (94)
T PF02214_consen    2 RLNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDD-YDDDDGEYFIDRDPELFEYILNY   59 (94)
T ss_dssp             EEEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGG-EETTTTEEEESS-HHHHHHHHHH
T ss_pred             EEEECC---EEEEEcHHHHhhCCCChhhhHHhhccccc-cCCccceEEeccChhhhhHHHHH
Confidence            345774   88999999887 54  6888888652221 22234899999999999999874

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=80.30  E-value=1.5  Score=32.31  Aligned_cols=24  Identities=21%  Similarity=0.702  Sum_probs=20.5

Q ss_pred             hHHHHHHhhhhhhcCCccCCCceEe
Q 042730           50 PSFQNLLSQTEEEFGFDHPMGGLTI   74 (88)
Q Consensus        50 P~F~~LL~~aeeEfG~~~~~G~L~I   74 (88)
                      -.|.++|++|..|+||.-+ |||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccC-CeEEE
Confidence            3577889999999999976 99986

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00